Query 004093
Match_columns 774
No_of_seqs 323 out of 2276
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 17:25:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1914 mRNA cleavage and poly 100.0 5E-104 1E-108 839.8 61.0 614 11-673 10-648 (656)
2 COG5107 RNA14 Pre-mRNA 3'-end 100.0 8.8E-59 1.9E-63 483.3 45.8 483 13-520 34-553 (660)
3 KOG1915 Cell cycle control pro 100.0 4.1E-55 8.8E-60 458.5 48.6 487 10-537 96-672 (677)
4 KOG1915 Cell cycle control pro 100.0 6.4E-44 1.4E-48 374.4 45.3 435 11-492 63-539 (677)
5 PF05843 Suf: Suppressor of fo 100.0 9.8E-39 2.1E-43 338.6 18.1 276 355-665 1-280 (280)
6 KOG2047 mRNA splicing factor [ 100.0 5.1E-32 1.1E-36 293.9 42.6 448 11-491 17-617 (835)
7 KOG1258 mRNA processing protei 100.0 3.4E-30 7.4E-35 282.3 44.5 443 18-490 27-545 (577)
8 KOG0495 HAT repeat protein [RN 100.0 1.6E-29 3.5E-34 274.7 44.4 414 18-493 344-786 (913)
9 KOG0495 HAT repeat protein [RN 100.0 5.2E-29 1.1E-33 270.7 41.7 423 18-495 405-886 (913)
10 KOG2047 mRNA splicing factor [ 100.0 1.4E-26 3.1E-31 251.7 41.6 420 18-484 205-718 (835)
11 KOG0128 RNA-binding protein SA 99.9 7.1E-22 1.5E-26 221.7 40.7 429 18-487 108-562 (881)
12 KOG4626 O-linked N-acetylgluco 99.9 5.6E-21 1.2E-25 207.3 37.4 376 13-455 108-487 (966)
13 TIGR02917 PEP_TPR_lipo putativ 99.9 1.3E-19 2.8E-24 221.6 50.5 407 18-491 460-868 (899)
14 TIGR02917 PEP_TPR_lipo putativ 99.9 2.6E-19 5.6E-24 219.0 51.4 411 12-491 422-834 (899)
15 KOG4626 O-linked N-acetylgluco 99.9 2E-20 4.4E-25 203.0 30.8 409 18-492 77-488 (966)
16 PRK11447 cellulose synthase su 99.9 1E-17 2.2E-22 210.9 49.9 408 33-490 280-741 (1157)
17 TIGR00990 3a0801s09 mitochondr 99.9 2.7E-17 5.8E-22 194.6 50.4 404 27-491 131-573 (615)
18 PRK11447 cellulose synthase su 99.9 1.7E-17 3.6E-22 209.1 50.4 423 18-486 57-555 (1157)
19 TIGR00990 3a0801s09 mitochondr 99.8 6.2E-17 1.3E-21 191.5 49.1 397 61-492 128-540 (615)
20 KOG1914 mRNA cleavage and poly 99.8 9E-18 1.9E-22 181.0 35.5 400 46-489 10-464 (656)
21 KOG1070 rRNA processing protei 99.8 3E-18 6.5E-23 200.1 27.9 236 246-491 1459-1702(1710)
22 PRK15174 Vi polysaccharide exp 99.8 4.3E-16 9.4E-21 184.6 41.8 347 30-454 50-404 (656)
23 KOG2396 HAT (Half-A-TPR) repea 99.8 1.2E-15 2.6E-20 164.0 38.4 412 38-491 87-561 (568)
24 PRK10049 pgaA outer membrane p 99.8 6E-15 1.3E-19 178.2 48.8 413 18-491 13-458 (765)
25 PRK15174 Vi polysaccharide exp 99.8 1.6E-15 3.5E-20 179.7 42.9 336 60-455 42-383 (656)
26 PRK10049 pgaA outer membrane p 99.8 8E-15 1.7E-19 177.2 46.2 387 18-456 44-459 (765)
27 KOG0547 Translocase of outer m 99.7 6.2E-14 1.3E-18 150.1 36.9 415 34-491 127-568 (606)
28 PLN03218 maturation of RBCL 1; 99.7 1.5E-12 3.2E-17 159.6 52.4 408 18-489 365-783 (1060)
29 KOG1258 mRNA processing protei 99.7 9.4E-14 2E-18 153.6 37.5 401 43-476 19-491 (577)
30 KOG2396 HAT (Half-A-TPR) repea 99.7 2.4E-13 5.2E-18 146.4 39.4 396 18-456 100-562 (568)
31 KOG1070 rRNA processing protei 99.7 1.2E-15 2.5E-20 178.8 22.8 213 272-489 1444-1663(1710)
32 PRK09782 bacteriophage N4 rece 99.7 3.9E-13 8.4E-18 163.7 44.5 399 18-491 338-742 (987)
33 PRK09782 bacteriophage N4 rece 99.7 3.6E-12 7.8E-17 155.3 51.7 189 297-491 520-708 (987)
34 COG3063 PilF Tfp pilus assembl 99.7 4E-14 8.6E-19 139.4 24.2 202 287-492 36-239 (250)
35 PLN03218 maturation of RBCL 1; 99.6 1.4E-11 3.1E-16 151.0 50.1 372 21-453 404-783 (1060)
36 PLN03077 Protein ECB2; Provisi 99.6 3.2E-12 6.8E-17 157.3 43.5 407 21-491 251-688 (857)
37 PRK11788 tetratricopeptide rep 99.6 1.4E-12 3.1E-17 145.4 36.5 132 288-455 182-313 (389)
38 PLN03081 pentatricopeptide (PP 99.6 1.4E-12 3.1E-17 156.7 39.0 394 20-491 120-525 (697)
39 PLN03081 pentatricopeptide (PP 99.6 4.3E-12 9.4E-17 152.5 42.6 395 22-486 86-488 (697)
40 PRK11788 tetratricopeptide rep 99.6 3.8E-12 8.1E-17 142.0 35.9 202 287-492 108-314 (389)
41 COG5107 RNA14 Pre-mRNA 3'-end 99.6 4.7E-12 1E-16 134.3 33.9 399 47-491 33-497 (660)
42 PLN03077 Protein ECB2; Provisi 99.6 1.8E-11 3.8E-16 150.7 41.3 214 268-490 505-721 (857)
43 KOG2002 TPR-containing nuclear 99.6 1.7E-11 3.7E-16 141.1 37.3 188 269-458 547-750 (1018)
44 KOG1155 Anaphase-promoting com 99.5 1.1E-10 2.3E-15 125.0 39.2 184 268-453 346-536 (559)
45 TIGR02521 type_IV_pilW type IV 99.5 3.8E-12 8.2E-17 129.5 27.3 202 285-490 30-233 (234)
46 PF13429 TPR_15: Tetratricopep 99.5 6.6E-14 1.4E-18 149.2 13.0 168 285-454 109-278 (280)
47 KOG0547 Translocase of outer m 99.5 6.1E-11 1.3E-15 127.5 34.8 218 287-511 327-550 (606)
48 PRK14574 hmsH outer membrane p 99.5 7E-10 1.5E-14 133.0 48.0 439 19-492 30-516 (822)
49 PRK12370 invasion protein regu 99.5 8.2E-12 1.8E-16 145.8 27.4 218 267-490 276-503 (553)
50 KOG0128 RNA-binding protein SA 99.5 1.8E-10 3.8E-15 130.9 35.3 411 38-491 95-528 (881)
51 KOG1155 Anaphase-promoting com 99.5 9E-10 2E-14 118.0 38.5 217 271-489 315-536 (559)
52 TIGR02521 type_IV_pilW type IV 99.5 2.5E-11 5.4E-16 123.4 25.2 187 267-454 46-233 (234)
53 KOG2003 TPR repeat-containing 99.5 4.8E-11 1E-15 126.4 27.5 404 38-491 217-691 (840)
54 PRK14574 hmsH outer membrane p 99.4 2.3E-09 5E-14 128.5 43.9 397 18-458 63-518 (822)
55 KOG1126 DNA-binding cell divis 99.4 5.7E-11 1.2E-15 132.5 27.8 287 37-423 334-624 (638)
56 KOG2002 TPR-containing nuclear 99.4 2.9E-09 6.2E-14 123.1 41.4 412 37-489 145-593 (1018)
57 PRK12370 invasion protein regu 99.4 1.4E-10 3E-15 135.5 30.5 207 266-478 318-525 (553)
58 PF13429 TPR_15: Tetratricopep 99.4 1.2E-12 2.5E-17 139.7 11.9 218 268-491 24-245 (280)
59 KOG1126 DNA-binding cell divis 99.4 1.1E-10 2.4E-15 130.2 24.4 216 274-493 409-624 (638)
60 COG3063 PilF Tfp pilus assembl 99.3 1.6E-10 3.4E-15 114.3 21.0 189 266-455 49-238 (250)
61 TIGR00540 hemY_coli hemY prote 99.3 1.2E-08 2.6E-13 114.9 37.1 288 35-418 97-398 (409)
62 KOG2076 RNA polymerase III tra 99.3 6.8E-08 1.5E-12 111.3 41.8 118 36-175 153-272 (895)
63 TIGR00540 hemY_coli hemY prote 99.3 2.7E-09 5.9E-14 120.1 28.9 217 268-490 134-400 (409)
64 PRK11189 lipoprotein NlpI; Pro 99.3 1.1E-09 2.3E-14 117.8 24.1 183 267-457 79-269 (296)
65 PRK10747 putative protoheme IX 99.2 3.6E-09 7.9E-14 118.5 28.5 218 267-491 133-392 (398)
66 KOG1173 Anaphase-promoting com 99.2 5.5E-08 1.2E-12 107.0 34.8 218 271-492 263-487 (611)
67 KOG2076 RNA polymerase III tra 99.2 4.3E-08 9.3E-13 112.9 35.4 323 13-382 165-510 (895)
68 PRK11189 lipoprotein NlpI; Pro 99.2 5.7E-09 1.2E-13 112.2 27.1 216 269-491 43-267 (296)
69 PF05843 Suf: Suppressor of fo 99.2 1.7E-10 3.6E-15 122.8 14.8 136 288-456 3-139 (280)
70 PRK10747 putative protoheme IX 99.2 9E-08 2E-12 107.3 36.7 135 280-420 257-391 (398)
71 KOG1129 TPR repeat-containing 99.1 6E-09 1.3E-13 107.2 19.2 223 266-494 237-463 (478)
72 PLN02789 farnesyltranstransfer 99.1 1.3E-07 2.8E-12 102.1 29.0 188 267-455 52-252 (320)
73 KOG2003 TPR repeat-containing 99.1 8E-07 1.7E-11 95.0 33.4 203 266-474 504-708 (840)
74 KOG1125 TPR repeat-containing 99.0 7.4E-09 1.6E-13 114.2 17.7 220 268-493 301-531 (579)
75 KOG4162 Predicted calmodulin-b 99.0 3.6E-06 7.9E-11 96.0 39.0 422 21-491 321-785 (799)
76 KOG1173 Anaphase-promoting com 99.0 5.9E-07 1.3E-11 99.1 29.8 185 269-455 329-520 (611)
77 TIGR03302 OM_YfiO outer membra 99.0 6.6E-08 1.4E-12 100.1 21.9 191 283-491 30-234 (235)
78 KOG2376 Signal recognition par 99.0 0.00017 3.8E-09 80.4 47.8 398 23-493 13-491 (652)
79 KOG3060 Uncharacterized conser 99.0 2.8E-07 6E-12 92.6 23.9 179 286-467 49-233 (289)
80 KOG1156 N-terminal acetyltrans 98.9 2E-05 4.3E-10 88.6 39.7 398 19-450 4-465 (700)
81 PRK15359 type III secretion sy 98.9 2.7E-08 5.9E-13 95.1 15.2 121 273-397 14-134 (144)
82 PRK15179 Vi polysaccharide bio 98.9 1.3E-07 2.8E-12 111.7 23.1 160 294-455 57-219 (694)
83 COG2956 Predicted N-acetylgluc 98.9 4.2E-07 9.2E-12 94.0 23.6 221 268-492 51-281 (389)
84 PRK10370 formate-dependent nit 98.9 6.5E-08 1.4E-12 97.5 16.1 118 268-386 55-175 (198)
85 COG2956 Predicted N-acetylgluc 98.9 9.3E-06 2E-10 84.3 31.5 97 288-384 182-278 (389)
86 cd05804 StaR_like StaR_like; a 98.9 4.7E-07 1E-11 99.7 24.2 204 282-487 2-213 (355)
87 PRK15179 Vi polysaccharide bio 98.8 1.4E-07 3.1E-12 111.3 20.6 141 281-423 81-221 (694)
88 KOG1174 Anaphase-promoting com 98.8 4.5E-06 9.7E-11 88.9 29.2 186 268-456 316-503 (564)
89 PRK15359 type III secretion sy 98.8 9.8E-08 2.1E-12 91.2 15.4 124 306-434 13-136 (144)
90 PLN02789 farnesyltranstransfer 98.8 4.1E-07 8.9E-12 98.3 21.4 174 295-472 46-229 (320)
91 KOG0624 dsRNA-activated protei 98.8 7.9E-06 1.7E-10 85.2 29.3 72 18-93 33-105 (504)
92 KOG1127 TPR repeat-containing 98.8 8.3E-06 1.8E-10 95.0 31.2 406 18-454 487-997 (1238)
93 KOG1129 TPR repeat-containing 98.8 8E-08 1.7E-12 99.1 13.0 187 267-455 271-460 (478)
94 KOG1125 TPR repeat-containing 98.7 6.8E-07 1.5E-11 99.0 20.4 116 268-384 410-527 (579)
95 TIGR03302 OM_YfiO outer membra 98.7 1.1E-06 2.3E-11 91.1 21.0 156 318-492 31-198 (235)
96 PRK10370 formate-dependent nit 98.7 2.5E-07 5.4E-12 93.3 15.6 123 300-456 53-176 (198)
97 KOG0548 Molecular co-chaperone 98.7 3.7E-05 8.1E-10 84.9 32.4 175 268-452 314-488 (539)
98 PF08424 NRDE-2: NRDE-2, neces 98.7 2.6E-07 5.6E-12 100.3 15.8 147 9-173 7-182 (321)
99 TIGR02552 LcrH_SycD type III s 98.7 5.8E-07 1.3E-11 84.4 15.9 109 274-383 5-113 (135)
100 KOG1174 Anaphase-promoting com 98.7 3.7E-06 8E-11 89.5 22.6 221 267-492 247-470 (564)
101 KOG3060 Uncharacterized conser 98.7 4.4E-06 9.5E-11 84.1 22.0 155 270-425 70-226 (289)
102 KOG1840 Kinesin light chain [C 98.7 3.6E-06 7.8E-11 95.3 24.0 224 267-491 214-481 (508)
103 KOG1128 Uncharacterized conser 98.7 6E-07 1.3E-11 101.7 17.5 210 266-494 412-621 (777)
104 KOG4162 Predicted calmodulin-b 98.7 3.4E-05 7.3E-10 88.3 31.5 83 38-130 460-544 (799)
105 TIGR02552 LcrH_SycD type III s 98.7 7E-07 1.5E-11 83.8 15.4 119 307-427 4-122 (135)
106 PF12569 NARP1: NMDA receptor- 98.6 0.00011 2.4E-09 84.2 35.3 302 34-383 16-333 (517)
107 cd05804 StaR_like StaR_like; a 98.6 2.6E-06 5.6E-11 93.8 21.6 182 272-455 26-217 (355)
108 COG5010 TadD Flp pilus assembl 98.6 4E-06 8.6E-11 85.1 19.6 178 272-452 53-230 (257)
109 KOG0548 Molecular co-chaperone 98.6 0.00028 6.1E-09 78.2 34.9 100 32-144 12-112 (539)
110 PRK14720 transcript cleavage f 98.6 4.7E-06 1E-10 99.6 23.0 202 281-492 26-255 (906)
111 KOG1156 N-terminal acetyltrans 98.6 6.9E-06 1.5E-10 92.1 22.4 221 266-492 55-286 (700)
112 PF12569 NARP1: NMDA receptor- 98.6 6E-05 1.3E-09 86.4 30.3 136 356-492 193-337 (517)
113 KOG1840 Kinesin light chain [C 98.6 3.8E-06 8.3E-11 95.1 20.3 207 282-490 195-439 (508)
114 KOG0624 dsRNA-activated protei 98.5 9.9E-06 2.1E-10 84.4 20.3 199 267-468 53-265 (504)
115 PRK14720 transcript cleavage f 98.5 1.7E-05 3.7E-10 94.9 25.3 224 245-480 31-278 (906)
116 KOG1127 TPR repeat-containing 98.5 9.5E-05 2.1E-09 86.5 29.0 80 269-348 579-658 (1238)
117 COG5010 TadD Flp pilus assembl 98.4 3.4E-05 7.3E-10 78.5 20.3 174 303-481 50-223 (257)
118 COG4783 Putative Zn-dependent 98.3 5.5E-05 1.2E-09 83.0 20.6 154 283-455 303-456 (484)
119 PF08424 NRDE-2: NRDE-2, neces 98.3 2.9E-05 6.3E-10 84.4 18.5 110 273-383 6-130 (321)
120 cd00189 TPR Tetratricopeptide 98.3 1E-05 2.2E-10 68.5 12.0 96 288-384 2-97 (100)
121 TIGR02795 tol_pal_ybgF tol-pal 98.2 2.3E-05 5E-10 71.2 13.7 102 286-387 2-108 (119)
122 PRK15363 pathogenicity island 98.2 1.6E-05 3.6E-10 75.6 12.8 102 283-385 32-133 (157)
123 KOG3617 WD40 and TPR repeat-co 98.2 0.0018 3.8E-08 74.6 29.6 234 285-528 911-1225(1416)
124 KOG1128 Uncharacterized conser 98.2 4.9E-05 1.1E-09 86.6 17.2 118 299-418 498-615 (777)
125 COG4783 Putative Zn-dependent 98.2 0.00048 1E-08 75.8 24.0 154 317-491 303-456 (484)
126 COG5191 Uncharacterized conser 98.2 5.5E-06 1.2E-10 85.2 8.5 144 211-367 29-188 (435)
127 PLN03088 SGT1, suppressor of 98.2 2.5E-05 5.4E-10 86.2 14.4 84 269-352 19-102 (356)
128 PF13414 TPR_11: TPR repeat; P 98.1 8.9E-06 1.9E-10 66.9 8.0 67 285-351 2-69 (69)
129 PLN03088 SGT1, suppressor of 98.1 5.3E-05 1.2E-09 83.6 15.8 90 293-383 9-98 (356)
130 COG3071 HemY Uncharacterized e 98.1 0.002 4.2E-08 69.3 26.6 216 268-490 134-391 (400)
131 cd00189 TPR Tetratricopeptide 98.1 3.7E-05 8.1E-10 65.0 11.5 97 358-455 3-99 (100)
132 PF09976 TPR_21: Tetratricopep 98.1 8.3E-05 1.8E-09 71.0 14.7 112 269-382 28-145 (145)
133 KOG2376 Signal recognition par 98.0 0.044 9.5E-07 61.8 41.1 120 335-456 356-490 (652)
134 PRK15363 pathogenicity island 98.0 0.00013 2.7E-09 69.6 14.3 106 317-424 32-137 (157)
135 PRK02603 photosystem I assembl 98.0 0.00023 5E-09 70.0 16.7 119 283-423 32-153 (172)
136 KOG0553 TPR repeat-containing 98.0 5.8E-05 1.3E-09 78.2 12.1 68 297-365 92-159 (304)
137 COG4235 Cytochrome c biogenesi 97.9 0.00025 5.4E-09 74.0 15.6 116 268-384 138-256 (287)
138 KOG0553 TPR repeat-containing 97.9 0.0001 2.3E-09 76.4 12.4 108 330-439 91-198 (304)
139 PF09976 TPR_21: Tetratricopep 97.9 0.00047 1E-08 65.8 16.1 80 299-378 24-108 (145)
140 PF08311 Mad3_BUB1_I: Mad3/BUB 97.9 0.00016 3.5E-09 67.2 12.4 112 218-347 4-126 (126)
141 PF13432 TPR_16: Tetratricopep 97.9 3.4E-05 7.3E-10 62.6 6.8 63 290-352 1-63 (65)
142 COG3071 HemY Uncharacterized e 97.9 0.06 1.3E-06 58.2 35.1 139 275-419 252-390 (400)
143 PF04733 Coatomer_E: Coatomer 97.9 0.00012 2.5E-09 78.4 12.5 198 287-492 67-268 (290)
144 COG0457 NrfG FOG: TPR repeat [ 97.9 0.018 3.9E-07 56.4 27.4 216 272-491 43-267 (291)
145 PF14559 TPR_19: Tetratricopep 97.8 7.2E-05 1.6E-09 61.1 7.8 64 297-361 2-65 (68)
146 PRK11906 transcriptional regul 97.8 0.00075 1.6E-08 74.6 17.7 148 266-416 272-433 (458)
147 PRK10153 DNA-binding transcrip 97.8 0.00087 1.9E-08 77.3 18.7 146 281-455 332-484 (517)
148 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00037 8E-09 63.2 12.6 100 323-423 5-109 (119)
149 PRK10803 tol-pal system protei 97.8 0.00059 1.3E-08 71.7 15.6 103 285-387 141-249 (263)
150 PF12895 Apc3: Anaphase-promot 97.8 7.4E-05 1.6E-09 64.1 7.1 77 268-345 5-83 (84)
151 PRK10866 outer membrane biogen 97.7 0.0052 1.1E-07 64.1 21.8 70 285-354 31-103 (243)
152 PF14938 SNAP: Soluble NSF att 97.7 0.00069 1.5E-08 72.4 15.6 163 291-455 40-227 (282)
153 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0012 2.5E-08 73.2 17.2 112 328-444 177-288 (395)
154 PF12895 Apc3: Anaphase-promot 97.7 0.00013 2.8E-09 62.6 7.7 81 299-381 2-84 (84)
155 PF04733 Coatomer_E: Coatomer 97.7 0.00044 9.5E-09 73.9 13.0 165 285-455 101-267 (290)
156 PF14559 TPR_19: Tetratricopep 97.7 0.00011 2.5E-09 59.9 6.7 63 266-328 5-67 (68)
157 COG0457 NrfG FOG: TPR repeat [ 97.7 0.013 2.8E-07 57.4 22.9 186 269-455 76-267 (291)
158 CHL00033 ycf3 photosystem I as 97.7 0.00067 1.5E-08 66.4 13.3 84 285-369 34-120 (168)
159 COG5191 Uncharacterized conser 97.6 5.8E-05 1.3E-09 77.9 5.2 95 42-148 93-188 (435)
160 PRK10153 DNA-binding transcrip 97.6 0.0042 9.1E-08 71.7 20.5 83 407-492 401-485 (517)
161 PF13525 YfiO: Outer membrane 97.6 0.008 1.7E-07 60.9 20.3 171 285-477 4-195 (203)
162 COG4235 Cytochrome c biogenesi 97.6 0.002 4.3E-08 67.4 15.7 116 302-421 138-258 (287)
163 PF13428 TPR_14: Tetratricopep 97.6 0.00018 3.8E-09 53.7 5.5 43 286-328 1-43 (44)
164 KOG0550 Molecular chaperone (D 97.5 0.0014 3E-08 70.5 14.1 165 289-454 172-351 (486)
165 PF13432 TPR_16: Tetratricopep 97.5 0.00044 9.6E-09 56.0 8.2 52 404-455 11-62 (65)
166 PF13414 TPR_11: TPR repeat; P 97.5 0.00034 7.4E-09 57.3 7.6 66 389-455 3-69 (69)
167 KOG3617 WD40 and TPR repeat-co 97.5 0.047 1E-06 63.4 26.5 100 284-383 856-995 (1416)
168 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0014 3E-08 72.6 14.5 111 268-382 185-295 (395)
169 PF14938 SNAP: Soluble NSF att 97.5 0.0042 9E-08 66.4 17.5 176 301-491 30-227 (282)
170 CHL00033 ycf3 photosystem I as 97.5 0.0017 3.7E-08 63.5 13.2 98 357-455 37-151 (168)
171 KOG3785 Uncharacterized conser 97.5 0.012 2.7E-07 62.1 19.3 169 241-428 55-223 (557)
172 PF13371 TPR_9: Tetratricopept 97.4 0.00067 1.5E-08 56.2 8.3 59 294-352 3-61 (73)
173 PRK10803 tol-pal system protei 97.4 0.0013 2.7E-08 69.3 12.0 86 267-352 158-249 (263)
174 PF12688 TPR_5: Tetratrico pep 97.4 0.0029 6.2E-08 58.2 12.7 97 287-383 2-103 (120)
175 PRK02603 photosystem I assembl 97.4 0.0052 1.1E-07 60.4 15.4 81 358-439 38-121 (172)
176 PRK11906 transcriptional regul 97.4 0.0097 2.1E-07 66.0 18.2 144 302-448 274-431 (458)
177 KOG0550 Molecular chaperone (D 97.3 0.0029 6.2E-08 68.2 13.2 150 272-422 189-353 (486)
178 PRK04841 transcriptional regul 97.3 0.86 1.9E-05 56.9 41.3 189 267-456 546-763 (903)
179 PF08311 Mad3_BUB1_I: Mad3/BUB 97.3 0.0027 5.8E-08 59.0 11.6 105 272-382 5-126 (126)
180 smart00777 Mad3_BUB1_I Mad3/BU 97.3 0.0025 5.5E-08 58.7 10.8 91 245-345 22-124 (125)
181 KOG3785 Uncharacterized conser 97.3 0.38 8.2E-06 51.3 29.9 86 70-177 32-123 (557)
182 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.0052 1.1E-07 68.0 14.3 70 281-350 70-142 (453)
183 KOG0543 FKBP-type peptidyl-pro 97.2 0.0055 1.2E-07 66.4 14.0 145 290-455 212-357 (397)
184 KOG3081 Vesicle coat complex C 97.2 0.11 2.5E-06 53.4 22.4 169 271-445 92-262 (299)
185 PF13371 TPR_9: Tetratricopept 97.2 0.0016 3.5E-08 53.8 7.9 61 267-327 10-70 (73)
186 KOG4555 TPR repeat-containing 97.2 0.0041 9E-08 56.8 10.4 95 293-387 50-147 (175)
187 PF02184 HAT: HAT (Half-A-TPR) 97.1 0.00044 9.6E-09 46.9 2.9 28 76-103 3-30 (32)
188 COG4785 NlpI Lipoprotein NlpI, 97.1 0.036 7.8E-07 55.2 17.2 191 252-453 67-266 (297)
189 PF02184 HAT: HAT (Half-A-TPR) 97.1 0.00065 1.4E-08 46.1 3.5 30 37-71 2-31 (32)
190 PF12688 TPR_5: Tetratrico pep 97.1 0.0077 1.7E-07 55.4 11.6 61 323-383 4-66 (120)
191 PF13525 YfiO: Outer membrane 97.1 0.055 1.2E-06 54.7 19.0 54 440-493 106-174 (203)
192 PRK15331 chaperone protein Sic 97.0 0.006 1.3E-07 58.6 11.0 99 287-386 38-136 (165)
193 PF04184 ST7: ST7 protein; In 97.0 0.021 4.6E-07 63.4 16.6 157 269-428 186-384 (539)
194 KOG0543 FKBP-type peptidyl-pro 97.0 0.0091 2E-07 64.8 13.6 144 326-492 214-358 (397)
195 COG4700 Uncharacterized protei 97.0 0.014 3.1E-07 56.6 12.7 116 267-384 104-226 (251)
196 PRK04841 transcriptional regul 96.9 0.14 3E-06 63.9 24.5 206 285-491 408-643 (903)
197 PF13512 TPR_18: Tetratricopep 96.9 0.026 5.7E-07 53.1 13.5 122 285-424 9-133 (142)
198 PRK10866 outer membrane biogen 96.9 0.25 5.5E-06 51.4 22.4 167 319-485 31-237 (243)
199 COG4700 Uncharacterized protei 96.8 0.12 2.6E-06 50.5 17.7 98 287-384 90-189 (251)
200 PF13431 TPR_17: Tetratricopep 96.8 0.0013 2.7E-08 46.1 3.2 33 274-306 1-33 (34)
201 PRK15331 chaperone protein Sic 96.8 0.039 8.4E-07 53.1 14.1 94 359-453 41-134 (165)
202 KOG2053 Mitochondrial inherita 96.8 0.58 1.2E-05 55.6 25.9 219 267-491 24-257 (932)
203 COG1729 Uncharacterized protei 96.7 0.035 7.7E-07 57.5 14.1 99 291-389 146-249 (262)
204 COG1729 Uncharacterized protei 96.6 0.044 9.5E-07 56.8 14.2 100 327-427 148-252 (262)
205 smart00386 HAT HAT (Half-A-TPR 96.6 0.0035 7.7E-08 42.7 4.3 31 37-71 2-32 (33)
206 COG4105 ComL DNA uptake lipopr 96.6 0.42 9.1E-06 49.3 20.9 189 285-491 33-235 (254)
207 KOG2796 Uncharacterized conser 96.5 0.61 1.3E-05 48.0 20.8 163 325-488 182-352 (366)
208 smart00386 HAT HAT (Half-A-TPR 96.5 0.0056 1.2E-07 41.7 4.6 31 405-435 2-32 (33)
209 KOG3081 Vesicle coat complex C 96.4 0.51 1.1E-05 48.8 19.9 192 288-491 74-273 (299)
210 COG3898 Uncharacterized membra 96.4 0.62 1.3E-05 50.4 21.1 172 292-469 126-305 (531)
211 PF13281 DUF4071: Domain of un 96.4 0.41 8.9E-06 52.6 20.5 169 285-455 140-336 (374)
212 PF06552 TOM20_plant: Plant sp 96.3 0.031 6.8E-07 54.4 10.1 87 266-352 5-112 (186)
213 PF04184 ST7: ST7 protein; In 96.3 0.34 7.3E-06 54.2 19.2 142 295-451 177-322 (539)
214 KOG1585 Protein required for f 96.2 0.57 1.2E-05 47.8 18.5 187 295-484 40-251 (308)
215 KOG3616 Selective LIM binding 96.2 3.7 8E-05 47.8 32.0 88 286-382 661-759 (1636)
216 PF13424 TPR_12: Tetratricopep 96.2 0.0077 1.7E-07 50.5 4.7 63 286-348 5-74 (78)
217 KOG3616 Selective LIM binding 96.1 4 8.6E-05 47.6 29.2 41 30-75 452-492 (1636)
218 KOG4234 TPR repeat-containing 96.1 0.082 1.8E-06 52.1 11.9 92 295-387 104-200 (271)
219 PF13428 TPR_14: Tetratricopep 96.0 0.015 3.3E-07 43.1 5.2 39 25-67 3-42 (44)
220 smart00777 Mad3_BUB1_I Mad3/BU 96.0 0.097 2.1E-06 48.4 11.4 103 272-380 5-124 (125)
221 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.029 6.4E-07 62.2 9.4 68 18-89 70-141 (453)
222 PF07719 TPR_2: Tetratricopept 95.8 0.023 5E-07 39.1 5.2 34 286-319 1-34 (34)
223 PF13431 TPR_17: Tetratricopep 95.7 0.013 2.8E-07 41.0 3.3 34 44-81 1-34 (34)
224 KOG4555 TPR repeat-containing 95.6 0.14 3E-06 47.1 10.3 88 330-419 53-144 (175)
225 KOG4340 Uncharacterized conser 95.5 0.38 8.3E-06 50.2 14.6 152 298-453 22-173 (459)
226 PF13512 TPR_18: Tetratricopep 95.5 0.35 7.5E-06 45.6 13.0 70 355-425 10-82 (142)
227 KOG4340 Uncharacterized conser 95.4 0.44 9.5E-06 49.8 14.3 180 272-455 30-213 (459)
228 PF13424 TPR_12: Tetratricopep 95.3 0.022 4.8E-07 47.7 4.2 63 321-383 6-74 (78)
229 KOG4234 TPR repeat-containing 95.3 0.23 4.9E-06 49.1 11.4 87 266-352 109-200 (271)
230 KOG4648 Uncharacterized conser 95.3 0.076 1.6E-06 56.2 8.7 95 292-387 103-197 (536)
231 COG3118 Thioredoxin domain-con 95.2 1.2 2.5E-05 47.0 17.2 55 294-348 142-196 (304)
232 KOG4648 Uncharacterized conser 95.2 0.086 1.9E-06 55.7 8.7 106 327-434 104-209 (536)
233 PF02259 FAT: FAT domain; Int 95.1 2.6 5.6E-05 46.0 21.2 116 354-472 145-304 (352)
234 PF00515 TPR_1: Tetratricopept 95.0 0.05 1.1E-06 37.6 4.7 34 286-319 1-34 (34)
235 KOG2796 Uncharacterized conser 95.0 2.3 4.9E-05 44.0 17.9 130 292-422 183-318 (366)
236 PF13281 DUF4071: Domain of un 94.8 1.9 4.1E-05 47.5 18.3 139 282-422 175-337 (374)
237 KOG1586 Protein required for f 94.8 1.9 4.2E-05 43.8 16.6 135 287-422 75-227 (288)
238 PF10300 DUF3808: Protein of u 94.6 0.52 1.1E-05 54.1 14.0 119 299-418 246-375 (468)
239 KOG1924 RhoA GTPase effector D 94.4 12 0.00026 44.1 23.9 48 404-451 379-428 (1102)
240 PF04910 Tcf25: Transcriptiona 94.3 1.5 3.2E-05 48.5 16.3 41 275-315 29-69 (360)
241 KOG1586 Protein required for f 94.1 7.7 0.00017 39.6 19.9 171 269-455 31-226 (288)
242 PF03704 BTAD: Bacterial trans 94.0 0.43 9.4E-06 45.2 10.1 61 24-88 63-124 (146)
243 COG4785 NlpI Lipoprotein NlpI, 94.0 7.5 0.00016 39.3 18.4 186 293-489 72-266 (297)
244 COG3898 Uncharacterized membra 93.8 12 0.00027 40.9 30.7 216 266-489 168-392 (531)
245 PF03704 BTAD: Bacterial trans 93.8 0.37 8.1E-06 45.6 9.2 62 287-348 63-124 (146)
246 KOG1130 Predicted G-alpha GTPa 93.8 2.9 6.3E-05 45.7 16.3 166 286-452 135-343 (639)
247 PF06552 TOM20_plant: Plant sp 93.4 0.77 1.7E-05 44.9 10.4 65 302-367 7-81 (186)
248 PF10300 DUF3808: Protein of u 93.3 0.95 2.1E-05 52.0 13.1 115 266-382 247-374 (468)
249 COG3118 Thioredoxin domain-con 93.3 4.6 0.0001 42.6 16.6 142 329-475 143-287 (304)
250 KOG2610 Uncharacterized conser 93.2 3.1 6.6E-05 44.5 15.2 156 295-452 112-275 (491)
251 PF13181 TPR_8: Tetratricopept 93.2 0.17 3.6E-06 34.8 4.3 32 287-318 2-33 (34)
252 COG4105 ComL DNA uptake lipopr 93.2 8.4 0.00018 40.0 18.1 129 266-394 48-206 (254)
253 KOG3824 Huntingtin interacting 93.0 0.41 8.9E-06 50.1 8.4 53 403-455 129-181 (472)
254 KOG1941 Acetylcholine receptor 92.8 4.6 9.9E-05 43.6 15.9 131 288-419 124-275 (518)
255 PF13174 TPR_6: Tetratricopept 92.7 0.23 4.9E-06 33.7 4.3 32 288-319 2-33 (33)
256 PF02259 FAT: FAT domain; Int 92.5 3.9 8.5E-05 44.5 16.2 67 282-348 142-212 (352)
257 PF07719 TPR_2: Tetratricopept 92.1 0.33 7.1E-06 33.2 4.5 32 61-92 2-33 (34)
258 KOG1585 Protein required for f 91.8 18 0.00038 37.4 22.8 124 296-422 120-259 (308)
259 KOG4642 Chaperone-dependent E3 91.2 0.88 1.9E-05 46.3 8.1 80 269-348 27-106 (284)
260 KOG3824 Huntingtin interacting 91.2 0.64 1.4E-05 48.7 7.3 62 296-358 126-187 (472)
261 KOG2471 TPR repeat-containing 91.1 1.7 3.6E-05 48.5 10.7 143 293-436 213-381 (696)
262 KOG2610 Uncharacterized conser 90.9 11 0.00024 40.3 16.1 144 273-418 124-275 (491)
263 PF00515 TPR_1: Tetratricopept 90.4 0.62 1.3E-05 31.9 4.5 32 61-92 2-33 (34)
264 PF08631 SPO22: Meiosis protei 90.2 18 0.00038 38.5 17.6 53 297-349 4-65 (278)
265 COG2976 Uncharacterized protei 89.9 2.6 5.7E-05 41.8 9.9 93 291-385 94-189 (207)
266 KOG0530 Protein farnesyltransf 89.9 27 0.00059 36.4 18.5 184 267-451 58-251 (318)
267 KOG4642 Chaperone-dependent E3 89.7 0.94 2E-05 46.1 6.8 82 301-383 25-106 (284)
268 COG4976 Predicted methyltransf 89.7 0.54 1.2E-05 47.5 5.1 59 294-352 3-61 (287)
269 KOG2422 Uncharacterized conser 89.5 11 0.00023 43.3 15.4 141 282-422 280-451 (665)
270 PF14561 TPR_20: Tetratricopep 88.2 3.9 8.4E-05 35.5 8.9 63 273-335 9-73 (90)
271 smart00028 TPR Tetratricopepti 88.1 0.82 1.8E-05 29.4 3.8 32 287-318 2-33 (34)
272 KOG1924 RhoA GTPase effector D 88.0 67 0.0014 38.3 20.8 20 363-382 373-392 (1102)
273 PF13176 TPR_7: Tetratricopept 87.3 1.2 2.7E-05 31.2 4.4 25 289-313 2-26 (36)
274 KOG0376 Serine-threonine phosp 86.8 0.92 2E-05 50.6 5.1 92 335-428 19-110 (476)
275 PF04910 Tcf25: Transcriptiona 86.4 18 0.00039 40.1 15.1 148 301-455 25-224 (360)
276 PF13181 TPR_8: Tetratricopept 86.0 1.3 2.9E-05 30.2 3.9 31 61-91 2-32 (34)
277 KOG0545 Aryl-hydrocarbon recep 85.7 12 0.00026 38.5 11.8 86 267-352 193-296 (329)
278 KOG1308 Hsp70-interacting prot 85.6 0.73 1.6E-05 49.2 3.4 91 291-383 120-210 (377)
279 PF13174 TPR_6: Tetratricopept 85.1 1.8 3.9E-05 29.0 4.2 19 404-422 14-32 (33)
280 PF09986 DUF2225: Uncharacteri 84.8 16 0.00035 37.2 12.8 67 321-387 119-197 (214)
281 COG2976 Uncharacterized protei 84.6 16 0.00034 36.5 11.8 95 359-455 93-190 (207)
282 KOG3807 Predicted membrane pro 84.4 16 0.00034 39.1 12.4 56 293-350 191-246 (556)
283 KOG1166 Mitotic checkpoint ser 84.2 11 0.00023 46.7 12.9 123 245-371 34-165 (974)
284 KOG0376 Serine-threonine phosp 84.2 2.3 5E-05 47.5 6.7 85 268-352 20-104 (476)
285 KOG1538 Uncharacterized conser 83.8 70 0.0015 37.4 17.9 83 287-381 748-830 (1081)
286 KOG0890 Protein kinase of the 83.5 1.8E+02 0.004 39.4 26.9 289 93-427 1629-1965(2382)
287 PF10345 Cohesin_load: Cohesin 83.5 1.1E+02 0.0023 36.6 21.4 133 285-418 58-207 (608)
288 KOG0890 Protein kinase of the 83.3 1.9E+02 0.0041 39.3 39.2 229 244-491 1669-1952(2382)
289 PF10602 RPN7: 26S proteasome 83.2 13 0.00027 36.8 10.9 62 287-348 37-101 (177)
290 COG4976 Predicted methyltransf 83.2 1.7 3.8E-05 44.0 4.7 54 267-320 10-63 (287)
291 KOG1130 Predicted G-alpha GTPa 82.5 86 0.0019 34.8 18.3 52 32-90 27-78 (639)
292 KOG0551 Hsp90 co-chaperone CNS 81.6 7.8 0.00017 41.5 9.0 93 327-420 88-183 (390)
293 KOG1550 Extracellular protein 81.4 78 0.0017 37.3 18.4 118 300-420 263-394 (552)
294 PF13176 TPR_7: Tetratricopept 80.8 2.8 6.1E-05 29.3 3.9 27 63-89 2-28 (36)
295 KOG1941 Acetylcholine receptor 79.7 1E+02 0.0022 33.8 22.9 23 644-666 443-465 (518)
296 PF10602 RPN7: 26S proteasome 79.3 9.5 0.00021 37.6 8.5 66 426-491 38-104 (177)
297 KOG2062 26S proteasome regulat 78.8 1.5E+02 0.0033 35.4 20.6 30 267-296 126-155 (929)
298 KOG0545 Aryl-hydrocarbon recep 78.0 59 0.0013 33.7 13.5 93 291-384 183-293 (329)
299 KOG2422 Uncharacterized conser 77.5 69 0.0015 37.0 15.2 151 301-455 253-450 (665)
300 PF04053 Coatomer_WDAD: Coatom 77.5 52 0.0011 37.5 14.7 134 286-450 295-428 (443)
301 smart00028 TPR Tetratricopepti 77.2 4.4 9.6E-05 25.7 3.9 31 61-91 2-32 (34)
302 KOG1920 IkappaB kinase complex 76.7 1.1E+02 0.0025 38.3 17.7 59 114-190 888-949 (1265)
303 KOG0551 Hsp90 co-chaperone CNS 76.4 16 0.00035 39.2 9.4 97 358-455 84-184 (390)
304 PF14561 TPR_20: Tetratricopep 75.7 26 0.00055 30.4 9.2 68 410-477 8-75 (90)
305 KOG1308 Hsp70-interacting prot 75.7 2.1 4.6E-05 45.9 2.8 86 267-352 129-214 (377)
306 COG3629 DnrI DNA-binding trans 75.6 17 0.00037 38.5 9.4 62 37-102 168-236 (280)
307 KOG1538 Uncharacterized conser 74.4 1.7E+02 0.0037 34.4 17.2 45 404-452 787-832 (1081)
308 KOG1550 Extracellular protein 74.3 1.1E+02 0.0025 35.9 17.0 144 303-455 229-395 (552)
309 PF11207 DUF2989: Protein of u 74.2 37 0.00079 34.1 10.8 84 354-444 110-198 (203)
310 KOG0530 Protein farnesyltransf 73.9 1E+02 0.0022 32.4 14.0 170 298-474 55-236 (318)
311 KOG4507 Uncharacterized conser 73.1 16 0.00035 41.9 8.9 85 299-384 620-705 (886)
312 KOG2053 Mitochondrial inherita 73.0 2.3E+02 0.005 34.7 41.3 22 34-55 21-42 (932)
313 PF15297 CKAP2_C: Cytoskeleton 72.3 18 0.0004 39.1 8.8 68 37-105 118-187 (353)
314 PF13041 PPR_2: PPR repeat fam 71.4 16 0.00034 27.4 6.1 42 60-101 3-46 (50)
315 PF14853 Fis1_TPR_C: Fis1 C-te 70.0 28 0.00061 27.0 7.1 36 288-323 3-38 (53)
316 PF04053 Coatomer_WDAD: Coatom 67.3 1.4E+02 0.003 34.1 15.1 117 275-415 311-427 (443)
317 KOG1972 Uncharacterized conser 66.8 82 0.0018 37.9 13.0 47 420-468 832-878 (913)
318 KOG1166 Mitotic checkpoint ser 66.3 70 0.0015 39.9 13.1 119 60-195 34-164 (974)
319 PF09986 DUF2225: Uncharacteri 65.9 59 0.0013 33.1 10.7 67 286-352 118-197 (214)
320 PRK10941 hypothetical protein; 65.8 53 0.0011 34.8 10.6 61 294-354 189-249 (269)
321 PF14929 TAF1_subA: TAF RNA Po 65.4 1.5E+02 0.0032 34.7 14.9 104 368-477 322-429 (547)
322 PF07079 DUF1347: Protein of u 65.4 1E+02 0.0022 34.8 12.8 30 425-454 127-158 (549)
323 COG1747 Uncharacterized N-term 65.2 2.6E+02 0.0056 32.2 18.0 60 287-348 100-159 (711)
324 KOG4507 Uncharacterized conser 64.2 33 0.00072 39.6 9.0 93 333-426 620-712 (886)
325 COG3629 DnrI DNA-binding trans 63.6 30 0.00065 36.7 8.2 62 287-348 154-215 (280)
326 KOG3364 Membrane protein invol 63.6 29 0.00062 32.6 7.0 64 392-455 37-102 (149)
327 PF10345 Cohesin_load: Cohesin 63.6 3.2E+02 0.0068 32.6 44.8 429 38-486 37-603 (608)
328 KOG0529 Protein geranylgeranyl 63.4 52 0.0011 36.5 10.1 126 18-148 104-240 (421)
329 TIGR02996 rpt_mate_G_obs repea 63.1 18 0.00039 26.5 4.4 32 274-305 4-35 (42)
330 PF13374 TPR_10: Tetratricopep 61.7 19 0.00042 25.2 4.7 28 288-315 4-31 (42)
331 PF09613 HrpB1_HrpK: Bacterial 61.2 1.4E+02 0.003 29.0 11.5 60 293-352 17-76 (160)
332 PRK10941 hypothetical protein; 59.3 75 0.0016 33.6 10.3 61 403-463 194-254 (269)
333 KOG1464 COP9 signalosome, subu 59.1 69 0.0015 33.5 9.5 127 293-420 112-261 (440)
334 COG3947 Response regulator con 58.1 32 0.00069 36.4 7.0 59 288-346 281-339 (361)
335 PF01535 PPR: PPR repeat; Int 57.0 15 0.00033 23.9 3.2 27 62-88 2-28 (31)
336 KOG2471 TPR repeat-containing 57.0 68 0.0015 36.4 9.7 137 329-469 215-378 (696)
337 KOG2581 26S proteasome regulat 56.5 3.3E+02 0.0071 30.5 19.6 193 292-491 132-348 (493)
338 KOG2300 Uncharacterized conser 56.0 3.6E+02 0.0079 30.9 17.9 65 36-104 61-133 (629)
339 PF07720 TPR_3: Tetratricopept 55.4 39 0.00084 23.9 5.1 31 287-317 2-34 (36)
340 KOG0985 Vesicle coat protein c 55.3 5.2E+02 0.011 32.5 23.2 75 284-363 1102-1178(1666)
341 PF12854 PPR_1: PPR repeat 54.9 20 0.00043 24.8 3.5 27 60-86 7-33 (34)
342 PF13374 TPR_10: Tetratricopep 54.1 24 0.00053 24.7 4.1 27 426-452 4-30 (42)
343 PF15297 CKAP2_C: Cytoskeleton 53.5 91 0.002 34.0 9.8 50 302-351 119-171 (353)
344 PRK15180 Vi polysaccharide bio 53.1 2.3E+02 0.0049 32.3 12.8 122 298-421 301-422 (831)
345 KOG0529 Protein geranylgeranyl 52.2 1E+02 0.0022 34.4 9.9 93 272-366 95-194 (421)
346 PF12854 PPR_1: PPR repeat 52.1 20 0.00043 24.7 3.2 28 21-48 5-33 (34)
347 PRK15180 Vi polysaccharide bio 52.0 2.2E+02 0.0048 32.4 12.5 120 273-394 310-430 (831)
348 PF07721 TPR_4: Tetratricopept 51.0 21 0.00045 22.9 2.9 23 288-310 3-25 (26)
349 COG2909 MalT ATP-dependent tra 50.9 5.6E+02 0.012 31.6 22.2 216 273-491 397-649 (894)
350 PF13041 PPR_2: PPR repeat fam 50.5 62 0.0013 24.1 6.0 29 356-384 4-32 (50)
351 KOG3807 Predicted membrane pro 49.6 3.7E+02 0.0081 29.1 16.5 103 269-386 202-306 (556)
352 PF12862 Apc5: Anaphase-promot 48.8 86 0.0019 27.1 7.5 64 27-90 3-71 (94)
353 TIGR02996 rpt_mate_G_obs repea 48.4 39 0.00084 24.9 4.1 33 307-339 3-35 (42)
354 smart00299 CLH Clathrin heavy 47.9 2.3E+02 0.0049 26.1 15.0 37 297-333 18-54 (140)
355 KOG0985 Vesicle coat protein c 47.9 6.8E+02 0.015 31.6 21.0 76 404-491 1089-1164(1666)
356 KOG1310 WD40 repeat protein [G 47.7 1E+02 0.0023 35.3 9.3 84 302-386 390-476 (758)
357 PF08631 SPO22: Meiosis protei 47.4 3.7E+02 0.0079 28.4 25.9 214 268-485 9-271 (278)
358 COG3947 Response regulator con 47.3 77 0.0017 33.7 7.8 78 404-493 269-346 (361)
359 PF14863 Alkyl_sulf_dimr: Alky 47.0 96 0.0021 29.4 7.9 84 246-334 35-118 (141)
360 PF08911 NUP50: NUP50 (Nucleop 46.5 5.6 0.00012 33.0 -0.4 38 732-769 26-68 (72)
361 KOG0276 Vesicle coat complex C 46.4 2.1E+02 0.0045 33.6 11.5 133 287-450 615-747 (794)
362 KOG2041 WD40 repeat protein [G 45.9 6.1E+02 0.013 30.5 28.7 37 275-311 841-877 (1189)
363 PF01535 PPR: PPR repeat; Int 45.8 28 0.00062 22.5 3.1 26 358-383 3-28 (31)
364 TIGR00756 PPR pentatricopeptid 43.5 42 0.00091 22.1 3.8 28 62-89 2-29 (35)
365 PF04781 DUF627: Protein of un 43.5 2.5E+02 0.0055 25.4 9.8 105 293-419 3-107 (111)
366 PF09670 Cas_Cas02710: CRISPR- 43.4 3E+02 0.0065 30.7 12.5 69 17-89 123-198 (379)
367 COG4455 ImpE Protein of avirul 43.1 3.9E+02 0.0085 27.5 12.1 59 294-352 9-67 (273)
368 PF12862 Apc5: Anaphase-promot 42.6 60 0.0013 28.1 5.5 52 297-348 9-69 (94)
369 KOG1839 Uncharacterized protei 42.5 1.8E+02 0.0038 37.2 11.1 136 355-491 973-1130(1236)
370 TIGR03504 FimV_Cterm FimV C-te 42.3 43 0.00093 24.9 3.8 25 290-314 3-27 (44)
371 COG4649 Uncharacterized protei 40.8 3.7E+02 0.0081 26.6 12.1 110 288-398 96-209 (221)
372 PF14853 Fis1_TPR_C: Fis1 C-te 40.4 86 0.0019 24.3 5.4 26 400-426 12-37 (53)
373 KOG0687 26S proteasome regulat 40.4 4.7E+02 0.01 28.5 12.3 98 285-384 103-210 (393)
374 KOG1920 IkappaB kinase complex 40.0 9.2E+02 0.02 30.9 27.2 38 274-311 923-964 (1265)
375 TIGR02561 HrpB1_HrpK type III 39.6 3.5E+02 0.0076 26.0 10.5 55 298-352 22-76 (153)
376 KOG2066 Vacuolar assembly/sort 39.5 7.8E+02 0.017 30.0 27.3 64 34-101 368-431 (846)
377 PF11846 DUF3366: Domain of un 39.5 1.8E+02 0.0038 28.8 9.1 47 270-317 129-175 (193)
378 COG4941 Predicted RNA polymera 39.5 5.5E+02 0.012 28.1 19.5 51 405-455 344-396 (415)
379 KOG0276 Vesicle coat complex C 39.3 3.9E+02 0.0085 31.4 12.3 117 274-414 629-745 (794)
380 KOG1310 WD40 repeat protein [G 38.5 2.6E+02 0.0056 32.3 10.6 86 337-424 391-479 (758)
381 PF00244 14-3-3: 14-3-3 protei 38.4 4.7E+02 0.01 27.0 13.7 28 290-317 5-32 (236)
382 COG2909 MalT ATP-dependent tra 36.7 9.1E+02 0.02 29.9 18.7 160 293-454 465-648 (894)
383 KOG4279 Serine/threonine prote 35.1 2.9E+02 0.0063 33.2 10.6 65 288-352 242-319 (1226)
384 PF13812 PPR_3: Pentatricopept 34.8 75 0.0016 21.0 3.9 27 62-88 3-29 (34)
385 PF10373 EST1_DNA_bind: Est1 D 34.6 1.2E+02 0.0027 31.5 7.5 59 272-331 2-61 (278)
386 TIGR00756 PPR pentatricopeptid 34.3 68 0.0015 21.0 3.7 26 358-383 3-28 (35)
387 TIGR03504 FimV_Cterm FimV C-te 34.2 67 0.0015 23.9 3.7 24 360-383 4-27 (44)
388 PRK15338 type III secretion sy 34.1 2.5E+02 0.0054 31.0 9.5 140 305-446 108-256 (372)
389 KOG1839 Uncharacterized protei 33.9 5.7E+02 0.012 32.8 13.6 120 299-419 945-1086(1236)
390 PF09205 DUF1955: Domain of un 33.7 4.2E+02 0.0091 25.1 9.5 81 266-350 70-150 (161)
391 PF11846 DUF3366: Domain of un 33.2 1.1E+02 0.0025 30.2 6.6 49 38-91 127-175 (193)
392 PF10373 EST1_DNA_bind: Est1 D 32.4 1.9E+02 0.004 30.1 8.4 61 41-105 1-62 (278)
393 KOG3783 Uncharacterized conser 31.9 8.7E+02 0.019 28.2 18.1 217 269-491 250-522 (546)
394 PRK15490 Vi polysaccharide bio 31.4 1.6E+02 0.0035 34.6 8.1 59 285-345 41-99 (578)
395 PF10516 SHNi-TPR: SHNi-TPR; 31.4 74 0.0016 22.8 3.4 29 61-89 2-30 (38)
396 KOG2581 26S proteasome regulat 31.1 6.9E+02 0.015 28.1 12.1 149 325-477 131-304 (493)
397 KOG2066 Vacuolar assembly/sort 30.7 1.1E+03 0.023 28.9 23.0 61 405-473 636-703 (846)
398 KOG0687 26S proteasome regulat 30.5 7.4E+02 0.016 27.0 13.0 25 321-345 105-129 (393)
399 KOG1464 COP9 signalosome, subu 29.0 7.2E+02 0.016 26.3 17.8 212 160-401 42-284 (440)
400 KOG4425 Uncharacterized conser 28.8 96 0.0021 34.7 5.3 70 630-699 105-188 (900)
401 KOG1811 Predicted Zn2+-binding 26.4 8.9E+02 0.019 28.5 12.3 68 354-421 586-655 (1141)
402 PF09797 NatB_MDM20: N-acetylt 26.1 2.8E+02 0.006 30.6 8.7 45 302-346 199-243 (365)
403 PF11817 Foie-gras_1: Foie gra 25.1 3.7E+02 0.008 27.9 8.9 45 304-348 156-206 (247)
404 KOG3783 Uncharacterized conser 24.7 1.2E+03 0.025 27.3 13.2 83 303-385 250-333 (546)
405 KOG2758 Translation initiation 24.6 9.4E+02 0.02 26.2 14.5 81 410-491 112-198 (432)
406 COG4170 SapD ABC-type antimicr 23.6 39 0.00085 34.1 1.2 24 572-595 261-284 (330)
407 PF09613 HrpB1_HrpK: Bacterial 23.6 6.8E+02 0.015 24.3 14.1 58 366-424 21-78 (160)
408 cd02680 MIT_calpain7_2 MIT: do 23.0 1.1E+02 0.0024 25.6 3.6 17 404-420 20-36 (75)
409 KOG3364 Membrane protein invol 22.7 2.8E+02 0.0061 26.2 6.4 55 369-426 49-107 (149)
410 COG0790 FOG: TPR repeat, SEL1 22.7 8.9E+02 0.019 25.2 19.2 117 301-421 92-222 (292)
411 KOG3779 Homeobox transcription 22.7 1.9E+02 0.0041 32.2 6.1 30 587-619 446-475 (737)
412 COG5187 RPN7 26S proteasome re 22.4 9.9E+02 0.021 25.7 13.9 99 355-455 115-223 (412)
413 KOG2114 Vacuolar assembly/sort 22.3 4.9E+02 0.011 31.9 9.8 29 356-384 369-397 (933)
414 KOG1972 Uncharacterized conser 21.9 1.6E+02 0.0034 35.7 5.6 51 282-332 832-882 (913)
415 KOG2300 Uncharacterized conser 21.7 1.3E+03 0.028 26.7 38.7 167 298-466 335-529 (629)
416 COG2912 Uncharacterized conser 21.5 3.6E+02 0.0077 28.5 7.7 58 296-353 191-248 (269)
417 KOG2041 WD40 repeat protein [G 21.2 1.5E+03 0.033 27.4 24.7 59 287-345 810-877 (1189)
418 COG5159 RPN6 26S proteasome re 21.1 9.7E+02 0.021 25.7 10.6 26 429-454 130-155 (421)
419 PF07720 TPR_3: Tetratricopept 21.0 3.1E+02 0.0067 19.3 5.0 9 404-412 15-23 (36)
420 PF11207 DUF2989: Protein of u 21.0 8.7E+02 0.019 24.5 17.6 55 284-339 139-197 (203)
421 PF09670 Cas_Cas02710: CRISPR- 20.9 1.2E+03 0.025 26.0 13.8 56 293-349 138-198 (379)
422 KOG2114 Vacuolar assembly/sort 20.7 1.6E+03 0.036 27.6 18.2 205 273-492 348-593 (933)
No 1
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=100.00 E-value=4.5e-104 Score=839.82 Aligned_cols=614 Identities=37% Similarity=0.639 Sum_probs=557.4
Q ss_pred chhccccCCCCCHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004093 11 EENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC 90 (774)
Q Consensus 11 e~~i~~~~nP~d~~~W~~l~~~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~ 90 (774)
+++|+ .||+|+++|..|++++++++++++|..||+++..||.+ +++|+.||+.|++.++|+.++.+|.|||...
T Consensus 10 ~~rie--~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s----~r~W~~yi~~El~skdfe~VEkLF~RCLvkv 83 (656)
T KOG1914|consen 10 RERIE--ENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSS----PRAWKLYIERELASKDFESVEKLFSRCLVKV 83 (656)
T ss_pred HHHHh--cCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCC----cHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 77899 99999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHH
Q 004093 91 LQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQR 170 (774)
Q Consensus 91 p~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqr 170 (774)
.+++||.+|+.|+++.+.. ....++++.++|++++..+|+|+.|.+||.+|+.|++.+++++.|+++|+++.+|++|+|
T Consensus 84 LnlDLW~lYl~YVR~~~~~-~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqr 162 (656)
T KOG1914|consen 84 LNLDLWKLYLSYVRETKGK-LFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQR 162 (656)
T ss_pred hhHhHHHHHHHHHHHHccC-cchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999997753 345789999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHH
Q 004093 171 AVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKR 250 (774)
Q Consensus 171 al~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~ 250 (774)
|+.+|+++++++|++|++||+.+|..+++|++.|.++.||+||++|+++....++|+++...+||.++..+.+|+++|++
T Consensus 163 al~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n 242 (656)
T KOG1914|consen 163 ALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKN 242 (656)
T ss_pred HhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred HHHHHhcCCCCC-CchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHh
Q 004093 251 LLTFEKGNPQRI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGS--------------IDAAIKVFQRALKA 315 (774)
Q Consensus 251 yi~~Ek~n~~~~-d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~--------------~e~A~~v~erAl~~ 315 (774)
||.||++||+++ +.....+|+.++|+|||...++++++|++|+.|+...++ .+++.++||+++..
T Consensus 243 ~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~ 322 (656)
T KOG1914|consen 243 WIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG 322 (656)
T ss_pred HHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 999999999995 667789999999999999999999999999999998877 78999999999986
Q ss_pred C-CCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHH
Q 004093 316 L-PDSEMLRYAFAELEESRGA---IAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHV 391 (774)
Q Consensus 316 ~-P~~~~l~~~~a~l~e~~g~---~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~ 391 (774)
. -.+..++++|+++++...+ .+....+|++++.....+.+++|++||+|.+|.++++.||.+|++|++.+...+|+
T Consensus 323 l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV 402 (656)
T KOG1914|consen 323 LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV 402 (656)
T ss_pred HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence 4 4678899999999998766 88999999999998887788999999999999999999999999999999988999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCchhHHHHHHHHHHHH
Q 004093 392 YVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSS-LPPEESIEVWKRFTQFE 470 (774)
Q Consensus 392 ~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~-~p~e~~~~lw~~~~~fE 470 (774)
|+..|.|||+|++|...|.+||+.|++++++++.+.++|++|++++|+.+|||.+|||++.. ++++++..+|.+|++||
T Consensus 403 fVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE 482 (656)
T KOG1914|consen 403 FVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE 482 (656)
T ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997 77789999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHHcc--ccccCCcchhhhhhhhHhhhcccCCCCCCChhhhhhhHHHHHHHHhhhccccccccC
Q 004093 471 QMYGDLDSTLKVEQRRKEALS--RTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALS 548 (774)
Q Consensus 471 ~~~Gd~~~i~kv~~R~~~~~p--k~~~d~~~a~~~~~~~~~~ry~f~d~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 548 (774)
+++||++++.++++|+..++| ++.+.+.+ ..+++||+|+|++||+..+||.|++.+-....+.... .++
T Consensus 483 S~vGdL~si~~lekR~~~af~~~qe~~~~~~------~~~v~RY~~~d~~~c~~~elk~l~~~~~~~~~~~~~g---~~~ 553 (656)
T KOG1914|consen 483 SNVGDLNSILKLEKRRFTAFPADQEYEGNET------ALFVDRYGILDLYPCSLDELKFLGYKEEDSAGLGFVG---LLD 553 (656)
T ss_pred HhcccHHHHHHHHHHHHHhcchhhcCCCChH------HHHHHHHhhcccccccHHHHHhhhHHHhhccccCCCC---chh
Confidence 999999999999999999999 34333433 3589999999999999999999999873210000000 000
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCcCCCCCCccccCCCCCCCCCCCCCCCCCCCccccccCCCCccccCCCCCCCchhhhh
Q 004093 549 NGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGISPSTTATGASSALNALSNPMVATGGGGIMNPFDEML 628 (774)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (774)
.....++. .+........+++||++||+||+||.+++||.||++|| +|
T Consensus 554 ~~s~~~~~----~~~~~nv~~~~~~pd~~qli~~~~r~n~~~~~~p~~~g------v~---------------------- 601 (656)
T KOG1914|consen 554 AFSSNLGK----ISQHSNVLMELPRPDVSQLIPFQPRSNAPPSAHPVPGG------VF---------------------- 601 (656)
T ss_pred hhhhhccc----ccccccccccCCchhHHHhcccCCCCCCCCccCCCCCC------CC----------------------
Confidence 00000111 01123334468999999999999999999999999987 67
Q ss_pred hcCCHHHHHHHhhCC---CCCCCCCCHHHHHHHHhcCCCCCCCcCCCC
Q 004093 629 KAASPAIFAFLANLP---AVEGPTPNVDIVLSICLQSDIPTGQMGKSP 673 (774)
Q Consensus 629 ~~~p~~~~~~~~~~p---~~~gp~~~vd~~~~~~~~~~~~~~~~~~~~ 673 (774)
|+||+++.||+.|| ||+|||++|+.|++|+.+|+||+-..-++|
T Consensus 602 -p~P~~v~~ll~~lP~p~~f~gp~i~~~ll~~~~~~~~iP~v~~~~~~ 648 (656)
T KOG1914|consen 602 -PLPPAVADLLSLLPPPQCFNGPFIQVELLNDIIDRVEIPNVESTKSG 648 (656)
T ss_pred -CCChHHHHHHHcCCCcccccCccccHHHHHHHHHhccCCCccccccc
Confidence 99999999999999 899999999999999999999986655444
No 2
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=100.00 E-value=8.8e-59 Score=483.32 Aligned_cols=483 Identities=28% Similarity=0.455 Sum_probs=437.9
Q ss_pred hccccCCCCCHHHHHHHHHHhccC-ChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004093 13 NITGVADKYNVETAEILANSALHL-PVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL 91 (774)
Q Consensus 13 ~i~~~~nP~d~~~W~~l~~~~~~~-~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p 91 (774)
||. .||.|+-.|..|++++..+ ..++.|.+||++..-||.- ...|..|+.-|+..++|..++.+|.|||....
T Consensus 34 rIk--dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~----~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 34 RIK--DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIM----EHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred Hhh--cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccc----cHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 566 9999999999999998875 7999999999999999999 99999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHH
Q 004093 92 QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRA 171 (774)
Q Consensus 92 ~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqra 171 (774)
+++||..|+.|+++.++....+.+-++-++|++.+..++++|.++++|..|..|++..++.+.|+++++++.+|..|+||
T Consensus 108 ~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 108 NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999886533356778999999999999999999999999999999999999999999999999999999
Q ss_pred HcccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-------CCCCCCCchhHHH
Q 004093 172 VVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNML-------AVPPTGSYKEEQQ 244 (774)
Q Consensus 172 l~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~-------~~pP~~~~~~~~q 244 (774)
|++|+++++++|++|..||+.+|+.+++|++.|.++.||.||..|+++....+++....+ .++-+ .
T Consensus 188 l~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~-------s 260 (660)
T COG5107 188 LQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART-------S 260 (660)
T ss_pred HcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc-------c
Confidence 999999999999999999999999999999999999999999999999999998864211 11111 1
Q ss_pred HHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004093 245 WIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRY 324 (774)
Q Consensus 245 ~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~ 324 (774)
..-|.+||.||..|++.+.......|+-++|++++...+..+++|++|..++...++-+.|.++.++|+..+|. |.+
T Consensus 261 ~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~ 337 (660)
T COG5107 261 DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTM 337 (660)
T ss_pred cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hhe
Confidence 23599999999999998855556679999999999999999999999999999999999999999999988887 888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCC------------------C-----------CCcHHHHHHHHHHHHHhcCHHHHH
Q 004093 325 AFAELEESRGAIAAAKKLYESLLTDS------------------V-----------NTTALAHIQFIRFLRRTEGVEAAR 375 (774)
Q Consensus 325 ~~a~l~e~~g~~e~A~~iyek~l~~~------------------~-----------~~~~~~~~~~a~~~~r~~~~~~Ar 375 (774)
.|++.++...+-+....+|+++++.- + +..+.+|+.+++..+|..+++.||
T Consensus 338 ~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR 417 (660)
T COG5107 338 FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAAR 417 (660)
T ss_pred eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHH
Confidence 99999999888888888888887520 1 023568999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 376 KYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 376 ~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
++|.++++.+-...++|+..|.+|+++++|+..|.+|||.|+..||+++.+...|..|++..|+.++||.+||+++.++.
T Consensus 418 ~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 418 KLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLE 497 (660)
T ss_pred HHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence 99999999997789999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccccccCCcchhhhhhhhHhhhcccCCCCCC
Q 004093 456 PEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPC 520 (774)
Q Consensus 456 ~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk~~~d~~~a~~~~~~~~~~ry~f~d~~p~ 520 (774)
......+|..|+.+|..+|++..+..+++|+.+++| .+++..-|.+||.+-++.-.
T Consensus 498 ~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p---------Qen~~evF~Sry~ik~da~~ 553 (660)
T COG5107 498 KTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP---------QENLIEVFTSRYAIKADAIL 553 (660)
T ss_pred HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC---------cHhHHHHHHHHHhhhccccC
Confidence 666789999999999999999999999999999999 34577779999999876433
No 3
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.1e-55 Score=458.47 Aligned_cols=487 Identities=20% Similarity=0.365 Sum_probs=388.2
Q ss_pred cchhccccCCCCCHHHHHHHHH-HhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004093 10 SEENITGVADKYNVETAEILAN-SALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLL 88 (774)
Q Consensus 10 ~e~~i~~~~nP~d~~~W~~l~~-~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~ 88 (774)
-|+++. .+..++.+|+++++ +++++.+++||++++||++..|.. .++|.+|+.||..+||+..|++||+|++.
T Consensus 96 ~ERALd--vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV----dqlWyKY~ymEE~LgNi~gaRqiferW~~ 169 (677)
T KOG1915|consen 96 FERALD--VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV----DQLWYKYIYMEEMLGNIAGARQIFERWME 169 (677)
T ss_pred HHHHHh--cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH----HHHHHHHHHHHHHhcccHHHHHHHHHHHc
Confidence 366777 89999999999999 788999999999999999999999 99999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHH
Q 004093 89 ICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAY 168 (774)
Q Consensus 89 ~~p~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vY 168 (774)
+.|+.+.|.+|++|+.++++ ++.+|.+|+ ++|-+|| ..+.|++|++|++.+ |.+..+|.||
T Consensus 170 w~P~eqaW~sfI~fElRyke------ieraR~IYe---rfV~~HP-~v~~wikyarFE~k~---------g~~~~aR~Vy 230 (677)
T KOG1915|consen 170 WEPDEQAWLSFIKFELRYKE------IERARSIYE---RFVLVHP-KVSNWIKYARFEEKH---------GNVALARSVY 230 (677)
T ss_pred CCCcHHHHHHHHHHHHHhhH------HHHHHHHHH---HHheecc-cHHHHHHHHHHHHhc---------CcHHHHHHHH
Confidence 99999999999999999987 789999999 7777775 688999999999864 4555566666
Q ss_pred HHHHcc--cCccHHHHHHHHHHHHHHh---hH--HHHH------------HH---HHHHHHHHHHH-----HHHHHHHHH
Q 004093 169 QRAVVT--PTHHVEQLWKDYENFENSV---SR--QLAK------------GL---LSEYQSKYTSA-----RAVYRERKK 221 (774)
Q Consensus 169 qral~~--P~~~~e~l~~~y~~fE~~~---~~--~lak------------~~---l~e~~~~y~~A-----r~i~k~~~~ 221 (774)
++|+.. .....+.++..|+.||..- .+ .+.+ .+ +-.+.++|+.- ..+++++.+
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 666532 2223345555555555541 00 0100 00 00112222211 112233333
Q ss_pred HHHHhh------------------------------hccCCCCCCCCch-hHHHHHHHHHHHHHHhcCCCCCCchhchHH
Q 004093 222 YCEEID------------------------------WNMLAVPPTGSYK-EEQQWIAWKRLLTFEKGNPQRIDTASSNKR 270 (774)
Q Consensus 222 ~~~~L~------------------------------~~~~~~pP~~~~~-~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r 270 (774)
|++.+. +.+.++||..... -...+-+|.+|+.|++-.. ....|
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~------ed~er 384 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEA------EDVER 384 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHh------hhHHH
Confidence 333222 1234688854221 1234568888988987543 34567
Q ss_pred HHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 271 IIFTYEQCLMYLYH----YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 271 ~~~~yeraL~~~p~----~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
...+|+.||.+.|| +..+|+.||+|+.++.++..|++++..||..||++..+. .|.+++.+++++++++.+|++.
T Consensus 385 tr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk-~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 385 TRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFK-GYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHH-HHHHHHHHHhhHHHHHHHHHHH
Confidence 78999999999997 789999999999999999999999999999999988765 8999999999999999999999
Q ss_pred hcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCH
Q 004093 347 LTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT--YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 424 (774)
Q Consensus 347 l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~--~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~ 424 (774)
|...|. .+.+|..|+.++...|+.++||.+|+-|+..|... --+|-.+..+|..+ |..++||++|++.|...++..
T Consensus 464 le~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~-~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 464 LEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEE-GEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhc-chHHHHHHHHHHHHHhcccch
Confidence 999997 68999999999999999999999999999877543 23444555577776 999999999999999999876
Q ss_pred HHHHHHHHHHH-----hcC-----------ChhHHHHHHHHHHhcC----CchhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004093 425 AYILEYADFLS-----RLN-----------DDRNIRALFERALSSL----PPEESIEVWKRFTQFEQMYGDLDSTLKVEQ 484 (774)
Q Consensus 425 ~l~~~ya~~l~-----~~g-----------d~~~Ar~lfEraL~~~----p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~ 484 (774)
+|..++.|+. ..+ ....||.+|++|+..+ |++....|.+.|.+||..+|+..++..|..
T Consensus 542 -vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s 620 (677)
T KOG1915|consen 542 -VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQS 620 (677)
T ss_pred -HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 9999999998 334 4578999999999743 456678999999999999999999999999
Q ss_pred HHHHHcccc----ccCCcchhhhhhhhHhhhcccCCCCCCChhhhhhh-HHHHHHHHh
Q 004093 485 RRKEALSRT----GEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHL-VRQEWLVKN 537 (774)
Q Consensus 485 R~~~~~pk~----~~d~~~a~~~~~~~~~~ry~f~d~~p~~~~~l~~l-~~~~~~~~~ 537 (774)
++++.++|. .+||. .+++++.+|.||++. ..+.+||+| +++.||++.
T Consensus 621 ~mPk~vKKrr~~~~edG~-----~~~EEy~DYiFPed~-~~~~~~K~LeaA~kWK~q~ 672 (677)
T KOG1915|consen 621 KMPKKVKKRRKIQREDGD-----TEYEEYFDYIFPEDA-SATKNLKILEAAKKWKKQK 672 (677)
T ss_pred hccHHHHhhhhhhcccCc-----hhHHHHHHhcCcccc-ccCcchHHHHHHHHHHHHH
Confidence 999999875 45653 568899999999985 667889999 899999864
No 4
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.4e-44 Score=374.39 Aligned_cols=435 Identities=23% Similarity=0.356 Sum_probs=369.6
Q ss_pred chhccccCCCCCHHHHHHHHHH-hccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004093 11 EENITGVADKYNVETAEILANS-ALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLI 89 (774)
Q Consensus 11 e~~i~~~~nP~d~~~W~~l~~~-~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~ 89 (774)
|..|. .|..++..|.+++.. ...+++.+||++|||||...-++ ..+|.+|+++||++.++..|++++.|++..
T Consensus 63 Ed~ir--rnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~----itLWlkYae~Emknk~vNhARNv~dRAvt~ 136 (677)
T KOG1915|consen 63 EDQIR--RNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRN----ITLWLKYAEFEMKNKQVNHARNVWDRAVTI 136 (677)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc----chHHHHHHHHHHhhhhHhHHHHHHHHHHHh
Confidence 44566 899999999999994 44568999999999999999999 999999999999999999999999999999
Q ss_pred CCCH-HHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHH
Q 004093 90 CLQV-PLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAY 168 (774)
Q Consensus 90 ~p~~-~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vY 168 (774)
.|.+ ++|..|+.+++..++ ++-+|++|++.++. .| ..+.|..||+|+.+ ...++.||.+|
T Consensus 137 lPRVdqlWyKY~ymEE~LgN------i~gaRqiferW~~w---~P-~eqaW~sfI~fElR---------ykeieraR~IY 197 (677)
T KOG1915|consen 137 LPRVDQLWYKYIYMEEMLGN------IAGARQIFERWMEW---EP-DEQAWLSFIKFELR---------YKEIERARSIY 197 (677)
T ss_pred cchHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHcC---CC-cHHHHHHHHHHHHH---------hhHHHHHHHHH
Confidence 9987 899999999998887 56799999977764 33 56899999999886 46789999999
Q ss_pred HHHHcc-cCccHHHHHHHHHHHHHHhhH-HHHH------------HH-----------HHHHHHHHHHHHHHHHHHHHHH
Q 004093 169 QRAVVT-PTHHVEQLWKDYENFENSVSR-QLAK------------GL-----------LSEYQSKYTSARAVYRERKKYC 223 (774)
Q Consensus 169 qral~~-P~~~~e~l~~~y~~fE~~~~~-~lak------------~~-----------l~e~~~~y~~Ar~i~k~~~~~~ 223 (774)
+|-+-. |.. +-|..|++||+.... .+++ .. .++.+++|++|+.+|+-
T Consensus 198 erfV~~HP~v---~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyky----- 269 (677)
T KOG1915|consen 198 ERFVLVHPKV---SNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKY----- 269 (677)
T ss_pred HHHheecccH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 999854 533 569999999987421 1111 11 23457888889988884
Q ss_pred HHhhhccCCCCCCCCchhHHHHHHHHHHHHHHh--cCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 004093 224 EEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEK--GNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGS 301 (774)
Q Consensus 224 ~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek--~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~ 301 (774)
+| .++| .+. .-++++.|+.||+ ++..+++.....+| ..-|++.+..+|.+.+.|++|..+....|+
T Consensus 270 -Al----d~~p-k~r-----aeeL~k~~~~fEKqfGd~~gIEd~Iv~KR-k~qYE~~v~~np~nYDsWfdylrL~e~~g~ 337 (677)
T KOG1915|consen 270 -AL----DHIP-KGR-----AEELYKKYTAFEKQFGDKEGIEDAIVGKR-KFQYEKEVSKNPYNYDSWFDYLRLEESVGD 337 (677)
T ss_pred -HH----HhcC-ccc-----HHHHHHHHHHHHHHhcchhhhHHHHhhhh-hhHHHHHHHhCCCCchHHHHHHHHHHhcCC
Confidence 22 2454 322 2369999999999 45566766666666 467999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHH-hCCHHHHHHHHHHHhcCCCC---CcHHHHHHHHHHHHHh
Q 004093 302 IDAAIKVFQRALKALPDS---------EMLRYAFAELEES-RGAIAAAKKLYESLLTDSVN---TTALAHIQFIRFLRRT 368 (774)
Q Consensus 302 ~e~A~~v~erAl~~~P~~---------~~l~~~~a~l~e~-~g~~e~A~~iyek~l~~~~~---~~~~~~~~~a~~~~r~ 368 (774)
.+..+++|++||...|.. .-||+.|+.+++. ..+.+.++++|+.+|+.-|. +++.+|+.|+.|+.|+
T Consensus 338 ~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq 417 (677)
T KOG1915|consen 338 KDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQ 417 (677)
T ss_pred HHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHH
Confidence 999999999999998853 2478999988876 48999999999999987664 4678999999999999
Q ss_pred cCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004093 369 EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFE 448 (774)
Q Consensus 369 ~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfE 448 (774)
.++..||+++..|+...+. ..++-.+..+|..+ +++++.|++||+-|...|.+-..|..|+.++..+||.++||.+|+
T Consensus 418 ~~l~~ARkiLG~AIG~cPK-~KlFk~YIelElqL-~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaife 495 (677)
T KOG1915|consen 418 LNLTGARKILGNAIGKCPK-DKLFKGYIELELQL-REFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFE 495 (677)
T ss_pred cccHHHHHHHHHHhccCCc-hhHHHHHHHHHHHH-hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999999997664 56666667778786 899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc
Q 004093 449 RALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 449 raL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk 492 (774)
-|+++-..+....+|..|++||..-|..+.+.++++|.++.-+.
T Consensus 496 lAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 496 LAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 99997655677899999999999999999999999999987763
No 5
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=100.00 E-value=9.8e-39 Score=338.65 Aligned_cols=276 Identities=42% Similarity=0.651 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004093 355 ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFL 434 (774)
Q Consensus 355 ~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l 434 (774)
+.+|++||+|++|.++++.||++|++|++.+.+++++|+.+|.+|+++.++.+.|++|||+|++.++++..+|+.|++|+
T Consensus 1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccccccCCcchhhhhhhhHhhhcc
Q 004093 435 SRLNDDRNIRALFERALSSLPPEE-SIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYS 513 (774)
Q Consensus 435 ~~~gd~~~Ar~lfEraL~~~p~e~-~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk~~~d~~~a~~~~~~~~~~ry~ 513 (774)
++.|+.++||.+|||++..++.+. ...||..|++||.++||++++.++++|+.+.++. +..+..+++||+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~---------~~~~~~f~~ry~ 151 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE---------DNSLELFSDRYS 151 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT---------S-HHHHHHCCT-
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh---------hhHHHHHHHHhh
Confidence 999999999999999999999877 7899999999999999999999999999999983 235667999999
Q ss_pred cCCCCCCChhhhhhhHHHHHHHHhhhccccccccCCCCCccCCCCCCCCCCCCCCCCCcCCCCCCccccCCCCCCCCCCC
Q 004093 514 FMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGIS 593 (774)
Q Consensus 514 f~d~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~ 593 (774)
|++++||+..+|..+++..+..+.......+. .+.....+. ..+......+||+++|.+++....... .
T Consensus 152 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~kr-------~~~~~~~~~~P~~~~~~~~~~~~~~~~--~ 220 (280)
T PF05843_consen 152 FLDLNPISPRELDSIGYQERPSQNDPSSVESS--QSSKNSPKR-------PVSDPDSDPRPDKSQMIEGPRPDQQRS--M 220 (280)
T ss_dssp BTTB-CCHHCCCCTTT----------------------------------------------------------------
T ss_pred ccccCcccHHhhhhhhhhhccccccccccccc--ccccCCccC-------CcccccccCCCchhhhhccccccchhh--h
Confidence 99999999999999988876542211111000 000000000 011111128999999998633111110 0
Q ss_pred CCCCCCCCccccccCCCCccccCCCCCCCchhhhhhcCCHHHHHHHhhCC---CCCCCCCCHHHHHHHHhcCCCC
Q 004093 594 PSTTATGASSALNALSNPMVATGGGGIMNPFDEMLKAASPAIFAFLANLP---AVEGPTPNVDIVLSICLQSDIP 665 (774)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~p---~~~gp~~~vd~~~~~~~~~~~~ 665 (774)
+.+.+ +. ..+++.........++||+++.||+.|| +|+||++++|.||++|++++||
T Consensus 221 ~~~~~----~~-----------~~~~~~~~~~~~~~plP~~I~~LLs~LP~~~~F~gp~~~~~~lv~ll~~~~lP 280 (280)
T PF05843_consen 221 PQPQP----QP-----------QASPQQHPVQGQPFPLPPAIAALLSILPPPSYFNGPRFDPDKLVELLRQVNLP 280 (280)
T ss_dssp ---------------------------------------CCCHHHHCCSB-CCCCTTS-SSCHHHHHHHCT----
T ss_pred ccccc----cc-----------ccCccccccCCCCCCCCHHHHHHHHhCCChhhcCCCCCCHHHHHHHHhcCCCC
Confidence 01100 00 0001112222333479999999999999 6899999999999999999998
No 6
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=5.1e-32 Score=293.93 Aligned_cols=448 Identities=21% Similarity=0.307 Sum_probs=348.5
Q ss_pred chhccccCCCCCHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHc--------CCHHHHHHH
Q 004093 11 EENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAV--------NNDDATKQL 82 (774)
Q Consensus 11 e~~i~~~~nP~d~~~W~~l~~~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~--------~n~~~a~~i 82 (774)
|..|. .||+++-.|.+||......+.++.+-+||||++.+|.+ .++|..|++.-... .-|+.+...
T Consensus 17 EeEil--Rnp~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp~s----ykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c 90 (835)
T KOG2047|consen 17 EEEIL--RNPFSVKCWLRYIEHKAGSPDKQRNLLYERALKELPGS----YKIWYDYLKARRAQVKHLCPTDPAYESVNNC 90 (835)
T ss_pred HHHHH--cCchhHHHHHHHHHHHccCChHHHHHHHHHHHHHCCCc----hHHHHHHHHHHHHHhhccCCCChHHHHHHHH
Confidence 33455 89999999999999887789999999999999999999 99999999665432 347889999
Q ss_pred HHHHHcc-CCCHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcC---------
Q 004093 83 FSRCLLI-CLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPAL--------- 152 (774)
Q Consensus 83 feRaL~~-~p~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~--------- 152 (774)
|+|||.. +..+.+|++|+.|+...++ +..+|.+|++||+.++.. ....||..|++|+.+.+.-
T Consensus 91 ~er~lv~mHkmpRIwl~Ylq~l~~Q~~------iT~tR~tfdrALraLpvt-qH~rIW~lyl~Fv~~~~lPets~rvyrR 163 (835)
T KOG2047|consen 91 FERCLVFMHKMPRIWLDYLQFLIKQGL------ITRTRRTFDRALRALPVT-QHDRIWDLYLKFVESHGLPETSIRVYRR 163 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcch------HHHHHHHHHHHHHhCchH-hhccchHHHHHHHHhCCChHHHHHHHHH
Confidence 9999986 4678999999999998776 789999999999998763 4568999999999865310
Q ss_pred ----c---------------------------------------------------------------------------
Q 004093 153 ----N--------------------------------------------------------------------------- 153 (774)
Q Consensus 153 ----~--------------------------------------------------------------------------- 153 (774)
.
T Consensus 164 YLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf 243 (835)
T KOG2047|consen 164 YLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF 243 (835)
T ss_pred HHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC
Confidence 0
Q ss_pred -------------hHHHhHHHHHHHHHHHHHHcc--cCccHHHHHHHHHHHHHHhhHHHHHHHH-HH-HHHHHHHHHHHH
Q 004093 154 -------------AQEESQRMIAIRKAYQRAVVT--PTHHVEQLWKDYENFENSVSRQLAKGLL-SE-YQSKYTSARAVY 216 (774)
Q Consensus 154 -------------~~~~~~~~~~ar~vYqral~~--P~~~~e~l~~~y~~fE~~~~~~lak~~l-~e-~~~~y~~Ar~i~ 216 (774)
-|-..|.++.||.+|+++|.. -..+..++|..|..||+.-.. .++- ++ ....-..-..+-
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~---~~me~a~~~~~n~ed~~dl~ 320 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVA---AKMELADEESGNEEDDVDLE 320 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHH---HHHhhhhhcccChhhhhhHH
Confidence 033467789999999999964 345668899999999987321 1111 10 000000000111
Q ss_pred HHHHHHHHHhhhc-------cCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHH-hcC-----
Q 004093 217 RERKKYCEEIDWN-------MLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLM-YLY----- 283 (774)
Q Consensus 217 k~~~~~~~~L~~~-------~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~-~~p----- 283 (774)
-.+..|+..+++. ++..-| ..+.-|.+-+.+.++++ .+.+.+|..|++ .+|
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLRQn~-------~nV~eW~kRV~l~e~~~---------~~~i~tyteAv~~vdP~ka~G 384 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLRQNP-------HNVEEWHKRVKLYEGNA---------AEQINTYTEAVKTVDPKKAVG 384 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCC-------ccHHHHHhhhhhhcCCh---------HHHHHHHHHHHHccCcccCCC
Confidence 1122233333221 011111 23567888877777654 455788999887 455
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC-------
Q 004093 284 HYPDIWYDYATWNAKSGSIDAAIKVFQRALKAL-PDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVN------- 352 (774)
Q Consensus 284 ~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~-P~~---~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~------- 352 (774)
....+|..++.|++.+|+++.|+.+|++|++.. +.- ..+|..||+++....+++.|.++.++++-....
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 356899999999999999999999999999853 433 578999999999999999999999998854321
Q ss_pred ----------CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--
Q 004093 353 ----------TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF-- 420 (774)
Q Consensus 353 ----------~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~-- 420 (774)
....+|..|++++...|-++..+++|.+.+...-+++.+.+++|.+.... +-++.|.++||+++..|
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh-~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEH-KYFEESFKAYERGISLFKW 543 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-HHHHHHHHHHHcCCccCCC
Confidence 12469999999999999999999999999998888999999999986554 78899999999999986
Q ss_pred CCCHHHHHHHHH-HHHhcC--ChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 421 MHEPAYILEYAD-FLSRLN--DDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 421 p~~~~l~~~ya~-~l~~~g--d~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
|+..++|..|.. |..+.| ..++||.+||+||+.+|++....|+..|..||.++|-...+.++++|+....+
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 566789998885 444444 57999999999999999999999999999999999988889999999888776
No 7
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=100.00 E-value=3.4e-30 Score=282.26 Aligned_cols=443 Identities=21% Similarity=0.343 Sum_probs=347.5
Q ss_pred CCCCCHHHHHHH-------------HHHhcc-CChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 004093 18 ADKYNVETAEIL-------------ANSALH-LPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLF 83 (774)
Q Consensus 18 ~nP~d~~~W~~l-------------~~~~~~-~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~if 83 (774)
..|.+...|..+ +.+... ..++.+|.+|..+|..+|.. ..+|.+|+.+|-+.|+.+.+.++|
T Consensus 27 ~~p~~~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~----~gyW~kfA~~E~klg~~~~s~~Vf 102 (577)
T KOG1258|consen 27 KYPDSLDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLC----YGYWKKFADYEYKLGNAENSVKVF 102 (577)
T ss_pred hCcchhhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccH----HHHHHHHHHHHHHhhhHHHHHHHH
Confidence 666666666654 322222 24778999999999999999 999999999999999999999999
Q ss_pred HHHHccCC-CHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHH
Q 004093 84 SRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMI 162 (774)
Q Consensus 84 eRaL~~~p-~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~ 162 (774)
+||+...| ++++|..|+.|+...+ ++.+.+|..|++|+..+|.|+.|.++|..||+|+.. +++..
T Consensus 103 ergv~aip~SvdlW~~Y~~f~~n~~-----~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~---------qks~k 168 (577)
T KOG1258|consen 103 ERGVQAIPLSVDLWLSYLAFLKNNN-----GDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENG---------QKSWK 168 (577)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhc---------cccHH
Confidence 99999875 7899999999987532 356779999999999999999999999999999853 56788
Q ss_pred HHHHHHHHHHcccCccHHHHHHHHHHHHHHhhH----------HHHHHHHH------------H----------HHHHHH
Q 004093 163 AIRKAYQRAVVTPTHHVEQLWKDYENFENSVSR----------QLAKGLLS------------E----------YQSKYT 210 (774)
Q Consensus 163 ~ar~vYqral~~P~~~~e~l~~~y~~fE~~~~~----------~lak~~l~------------e----------~~~~y~ 210 (774)
.+-.+|+|.+.+|.+.....|..|.++.+..+. .+.+.+.. + -++.+.
T Consensus 169 ~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~ 248 (577)
T KOG1258|consen 169 RVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLT 248 (577)
T ss_pred HHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhh
Confidence 899999999999999999999888888665211 01111110 0 011111
Q ss_pred HH------------------HHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHH
Q 004093 211 SA------------------RAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRII 272 (774)
Q Consensus 211 ~A------------------r~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~ 272 (774)
.+ ..-..++..|++.|.+..+++.|.. ..|+..|..|+.|+... +...++.
T Consensus 249 ~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~----~aql~nw~~yLdf~i~~-------g~~~~~~ 317 (577)
T KOG1258|consen 249 EEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLD----QAQLKNWRYYLDFEITL-------GDFSRVF 317 (577)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCccc----HHHHHHHHHHhhhhhhc-------ccHHHHH
Confidence 11 1123346677888888888888874 46788999999999864 5678899
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 004093 273 FTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSV 351 (774)
Q Consensus 273 ~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~-~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~ 351 (774)
..|++|+..+.++.++|+.|+.|++..|+.+-|..++.++.+. +|....+++.++.+++..|++..|+.+|+++....|
T Consensus 318 ~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~p 397 (577)
T KOG1258|consen 318 ILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYP 397 (577)
T ss_pred HHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999985 788899999999999999999999999999998887
Q ss_pred CCcHHHHHHHHHHHHHhcCHHHHH---HHHHHHhcC---CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHH
Q 004093 352 NTTALAHIQFIRFLRRTEGVEAAR---KYFLDARKS---PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPA 425 (774)
Q Consensus 352 ~~~~~~~~~~a~~~~r~~~~~~Ar---~if~~al~~---~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~ 425 (774)
. ...+-..++.+++|.++.+.+. .++...... .......+++++.+-+.+.++.+.|+.++..++...|++..
T Consensus 398 g-~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~ 476 (577)
T KOG1258|consen 398 G-LVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKV 476 (577)
T ss_pred c-hhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHH
Confidence 5 5677788999999999999998 445444433 33346778899999888889999999999999999999999
Q ss_pred HHHHHHHHHHhcCC---hhHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 004093 426 YILEYADFLSRLND---DRNIRALFERALS-SLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEAL 490 (774)
Q Consensus 426 l~~~ya~~l~~~gd---~~~Ar~lfEraL~-~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~ 490 (774)
++..+++|+..+.. .+-.-.++...+. ..+.++...--.+|++|-.-+|+.....+.+.+.++.+
T Consensus 477 ~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~~~~~~~~~~~~~~k~~ef~e~~g~~~~~~~~~~~~l~~~ 545 (577)
T KOG1258|consen 477 LYLELIRFELIQPSGREYDLLEPIDWKELKMLIDFDDSRSSTDKYIEFLEWFGIDHKGAQDERPHLKNF 545 (577)
T ss_pred HHHHHHHHHHhCCcchhhhhhhhHHHHHHhhhccccccccchHHHHHHHHhccchhHhHhhchHHHHHH
Confidence 99999999987753 2222333333333 22223333334447888777887766666555555443
No 8
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=1.6e-29 Score=274.66 Aligned_cols=414 Identities=18% Similarity=0.237 Sum_probs=338.8
Q ss_pred CCCCCHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHH
Q 004093 18 ADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLW 96 (774)
Q Consensus 18 ~nP~d~~~W~~l~~~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p-~~~lW 96 (774)
.+|.++..|.+.+.... +...-..++.++|+..|++ .++|+.-+++| +.+.|+-++.|+++.|| +.+||
T Consensus 344 ~~P~Sv~lW~kA~dLE~--~~~~K~RVlRKALe~iP~s----v~LWKaAVelE----~~~darilL~rAveccp~s~dLw 413 (913)
T KOG0495|consen 344 FLPTSVRLWLKAADLES--DTKNKKRVLRKALEHIPRS----VRLWKAAVELE----EPEDARILLERAVECCPQSMDLW 413 (913)
T ss_pred hCCCChhhhhhHHhhhh--HHHHHHHHHHHHHHhCCch----HHHHHHHHhcc----ChHHHHHHHHHHHHhccchHHHH
Confidence 77888888887765322 3445566788888888888 88888888766 44559999999999986 56999
Q ss_pred HHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHc-c-
Q 004093 97 RCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVV-T- 174 (774)
Q Consensus 97 ~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~-~- 174 (774)
..|++.+. .+.+++++..+-+.++.+ ..||+...+.++. +|+.+.+.++..|++. +
T Consensus 414 lAlarLet----------YenAkkvLNkaRe~iptd---~~IWitaa~LEE~---------ngn~~mv~kii~rgl~~L~ 471 (913)
T KOG0495|consen 414 LALARLET----------YENAKKVLNKAREIIPTD---REIWITAAKLEEA---------NGNVDMVEKIIDRGLSELQ 471 (913)
T ss_pred HHHHHHHH----------HHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHh
Confidence 99999875 356788888888887554 5899999998764 6788889999999984 2
Q ss_pred ---cCccHHHHHHHHHHHHHHhhHHHHHHHHHH----------H-------------HHHHHHHHHHHHHHHHHHHHhhh
Q 004093 175 ---PTHHVEQLWKDYENFENSVSRQLAKGLLSE----------Y-------------QSKYTSARAVYRERKKYCEEIDW 228 (774)
Q Consensus 175 ---P~~~~e~l~~~y~~fE~~~~~~lak~~l~e----------~-------------~~~y~~Ar~i~k~~~~~~~~L~~ 228 (774)
-..+.++-.++-...|..-...+...++.. + .+.++-||.||.. .|
T Consensus 472 ~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~------al-- 543 (913)
T KOG0495|consen 472 ANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH------AL-- 543 (913)
T ss_pred hcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH------HH--
Confidence 133444544454444443211122221111 1 1233334555442 22
Q ss_pred ccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004093 229 NMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKV 308 (774)
Q Consensus 229 ~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v 308 (774)
.+-|... .+|.+.+.||+.. +..+.+..++++++..+|..+.+|++|+.-.+..|+.-.|+.+
T Consensus 544 ---qvfp~k~-------slWlra~~~ek~h-------gt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 544 ---QVFPCKK-------SLWLRAAMFEKSH-------GTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred ---hhccchh-------HHHHHHHHHHHhc-------CcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHH
Confidence 3444432 4999999999986 4567778899999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 004093 309 FQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT 388 (774)
Q Consensus 309 ~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~ 388 (774)
+.+|+..+|++.++|++-..++.....+++|+.+|.++....+. ..+|+.++.|++-+++.++|+.+++++++.-+..
T Consensus 607 l~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT--eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f 684 (913)
T KOG0495|consen 607 LDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT--ERVWMKSANLERYLDNVEEALRLLEEALKSFPDF 684 (913)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc--chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch
Confidence 99999999999999999999999999999999999999987774 6899999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 004093 389 YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQ 468 (774)
Q Consensus 389 ~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~ 468 (774)
..+|+..++++... ++++.||..|..|++.+|+..-+|+..++++.+.|...+||.+++|+.-+.| +...+|..-++
T Consensus 685 ~Kl~lmlGQi~e~~-~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP--k~~~lwle~Ir 761 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQM-ENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP--KNALLWLESIR 761 (913)
T ss_pred HHHHHHHhHHHHHH-HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC--CcchhHHHHHH
Confidence 99999999997775 9999999999999999999999999999999999999999999999999999 67899999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHcccc
Q 004093 469 FEQMYGDLDSTLKVEQRRKEALSRT 493 (774)
Q Consensus 469 fE~~~Gd~~~i~kv~~R~~~~~pk~ 493 (774)
+|.+.|+.+.+.....|+++-+|..
T Consensus 762 ~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999953
No 9
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.98 E-value=5.2e-29 Score=270.74 Aligned_cols=423 Identities=19% Similarity=0.234 Sum_probs=339.7
Q ss_pred CCCCCHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC------C
Q 004093 18 ADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC------L 91 (774)
Q Consensus 18 ~nP~d~~~W~~l~~~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~------p 91 (774)
.-|.++++|..|++.. .+..|+.++.++-+..|+. ..+|+.-+.+|..+||.+.+.+|..|++... -
T Consensus 405 ccp~s~dLwlAlarLe---tYenAkkvLNkaRe~iptd----~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i 477 (913)
T KOG0495|consen 405 CCPQSMDLWLALARLE---TYENAKKVLNKAREIIPTD----REIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEI 477 (913)
T ss_pred hccchHHHHHHHHHHH---HHHHHHHHHHHHHhhCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceee
Confidence 6788888888877642 4677888888888888888 8888888888888999999999999988642 3
Q ss_pred CHHHHHHHHHHHHHHhhcc-------------------------------CCccHHHHHHHHHHHHHhcCCCCCChHhHH
Q 004093 92 QVPLWRCYIRFIRKVYEKK-------------------------------GTEGQEETRKAFDFMLSHVGSDISSGPIWL 140 (774)
Q Consensus 92 ~~~lW~~Yl~~~~~~~~~~-------------------------------~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~ 140 (774)
+-+-|+.-+.-+.+.+... ....++.+|.+|.++|+.. |...++|.
T Consensus 478 ~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf---p~k~slWl 554 (913)
T KOG0495|consen 478 NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF---PCKKSLWL 554 (913)
T ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc---cchhHHHH
Confidence 4578877776555432110 0245789999999888764 55668999
Q ss_pred HHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHc-ccCccHHHHHHHHHHHHHHhhHH-HHHHH-----------------
Q 004093 141 EYITFLKSLPALNAQEESQRMIAIRKAYQRAVV-TPTHHVEQLWKDYENFENSVSRQ-LAKGL----------------- 201 (774)
Q Consensus 141 ~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~-~P~~~~e~l~~~y~~fE~~~~~~-lak~~----------------- 201 (774)
..+.|+++ .|..+....++++|+. .|.. +-+|.-|.+---..+.. -++.+
T Consensus 555 ra~~~ek~---------hgt~Esl~Allqkav~~~pka--e~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwla 623 (913)
T KOG0495|consen 555 RAAMFEKS---------HGTRESLEALLQKAVEQCPKA--EILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLA 623 (913)
T ss_pred HHHHHHHh---------cCcHHHHHHHHHHHHHhCCcc--hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999986 4778888899999985 5644 45676665421111110 01111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHH
Q 004093 202 ---LSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQC 278 (774)
Q Consensus 202 ---l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yera 278 (774)
++-...+|++||.++.+. ....|+. .+|.+++.||..- +..++++.++|+|
T Consensus 624 avKle~en~e~eraR~llaka-----------r~~sgTe--------Rv~mKs~~~er~l-------d~~eeA~rllEe~ 677 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKA-----------RSISGTE--------RVWMKSANLERYL-------DNVEEALRLLEEA 677 (913)
T ss_pred HHHHhhccccHHHHHHHHHHH-----------hccCCcc--------hhhHHHhHHHHHh-------hhHHHHHHHHHHH
Confidence 111234667777665531 1123332 5999999998742 3456778889999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHH
Q 004093 279 LMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAH 358 (774)
Q Consensus 279 L~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~ 358 (774)
|+.+|++..+|+++++++++.++++.|++.|..+++.||.+.-||+.++.+++..|++-+|+.+++++.-.+|. ...+|
T Consensus 678 lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lw 756 (913)
T KOG0495|consen 678 LKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLW 756 (913)
T ss_pred HHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 67999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 004093 359 IQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLN 438 (774)
Q Consensus 359 ~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~g 438 (774)
+..++++.|.|+.+.|+.+..+|++..+.+...|.....|+-+. +. +..+..|++++.+++.+++.-+.++....
T Consensus 757 le~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~-~r----kTks~DALkkce~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 757 LESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP-QR----KTKSIDALKKCEHDPHVLLAIAKLFWSEK 831 (913)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc-cc----chHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 99999999999999999999999998888899999888887553 33 44567889999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccccc
Q 004093 439 DDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGE 495 (774)
Q Consensus 439 d~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk~~~ 495 (774)
.+++||..|+|+++..| +..+.|.-|..||..+|+-++-..|++++...-|++++
T Consensus 832 k~~kar~Wf~Ravk~d~--d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~ 886 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKDP--DNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGE 886 (913)
T ss_pred HHHHHHHHHHHHHccCC--ccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Confidence 99999999999999988 67899999999999999999999999999999997753
No 10
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.96 E-value=1.4e-26 Score=251.75 Aligned_cols=420 Identities=15% Similarity=0.290 Sum_probs=322.8
Q ss_pred CCCCCHHHHHHHHHHhccC----ChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC---
Q 004093 18 ADKYNVETAEILANSALHL----PVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC--- 90 (774)
Q Consensus 18 ~nP~d~~~W~~l~~~~~~~----~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~--- 90 (774)
.-|.|...|..+.+.+-+. .-...-.++...+..||+. .+.+|..++..+.+.|.|+.|+.+|+.++...
T Consensus 205 ~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq---~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tv 281 (835)
T KOG2047|consen 205 KGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQ---LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTV 281 (835)
T ss_pred cccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHH---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheeh
Confidence 4577889999988865432 1233456668888999976 57899999999999999999999999999875
Q ss_pred CCH-HHHHHHHHHHHHHhhcc--------C------------------------------------------------Cc
Q 004093 91 LQV-PLWRCYIRFIRKVYEKK--------G------------------------------------------------TE 113 (774)
Q Consensus 91 p~~-~lW~~Yl~~~~~~~~~~--------~------------------------------------------------~~ 113 (774)
.+. .++..|+.|++++-... + .+
T Consensus 282 rDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~ 361 (835)
T KOG2047|consen 282 RDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEG 361 (835)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcC
Confidence 343 89999999998652110 0 12
Q ss_pred cHHHHHHHHHHHHHhcCCCCC---ChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCccHH---HHHHHHH
Q 004093 114 GQEETRKAFDFMLSHVGSDIS---SGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVE---QLWKDYE 187 (774)
Q Consensus 114 ~~e~ar~~ye~aL~~vg~d~~---s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~~~e---~l~~~y~ 187 (774)
+..+..++|..|++.|..... -+.+|..|++| |+.++.++.||.+|++|+.+|...++ .+|.+|+
T Consensus 362 ~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fakl---------Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wa 432 (835)
T KOG2047|consen 362 NAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKL---------YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWA 432 (835)
T ss_pred ChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHH---------HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHH
Confidence 244556677777776632111 13578888887 45578999999999999999876664 5555555
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC---c--------hhHHHHHHHHHHHHHHh
Q 004093 188 NFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGS---Y--------KEEQQWIAWKRLLTFEK 256 (774)
Q Consensus 188 ~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~---~--------~~~~q~~lW~~yi~~Ek 256 (774)
..|.. ...++.|.++..+ +.++|-... + +-...+.+|..|+++|+
T Consensus 433 emElr-------------h~~~~~Al~lm~~-----------A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 433 EMELR-------------HENFEAALKLMRR-----------ATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHHh-------------hhhHHHHHHHHHh-----------hhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 55443 4556666665543 222321100 0 01234679999999998
Q ss_pred cCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHh-
Q 004093 257 GNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP--DSEMLRYAFAELEESR- 333 (774)
Q Consensus 257 ~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P--~~~~l~~~~a~l~e~~- 333 (774)
.- +..+....+|++.+.+---.|.+-.+||.|++.+.-++++-++|+|+|..++ .-.++|..|..-...+
T Consensus 489 s~-------gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 489 SL-------GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred Hh-------ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 64 4556677899999999888999999999999999999999999999999875 6688999887644443
Q ss_pred --CCHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCC
Q 004093 334 --GAIAAAKKLYESLLTDSVNTTA-LAHIQFIRFLRRTEGVEAARKYFLDARKSPNF-----TYHVYVAYALMAFCQDKD 405 (774)
Q Consensus 334 --g~~e~A~~iyek~l~~~~~~~~-~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~-----~~~~~i~~A~lE~~~~gd 405 (774)
.+.++||.+|+++++..|...+ .+|+.|++|+.+.|-...|..||++|-..... -+.+|+.-|.-.| .
T Consensus 562 gg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~y----G 637 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIY----G 637 (835)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh----C
Confidence 4689999999999998875433 48999999999999999999999998875432 2667777655433 3
Q ss_pred HHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004093 406 PKLAHNVFEAGLKRFMHE--PAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVE 483 (774)
Q Consensus 406 ~~~A~~ife~al~~~p~~--~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~ 483 (774)
+...|.||+++++..|++ .++.+.+++++.++|+.++||.+|--+-+.++|....++|+.|-.||-+|||.+++...+
T Consensus 638 v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 638 VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 567899999999998875 467899999999999999999999999999998888999999999999999987777665
Q ss_pred H
Q 004093 484 Q 484 (774)
Q Consensus 484 ~ 484 (774)
+
T Consensus 718 R 718 (835)
T KOG2047|consen 718 R 718 (835)
T ss_pred H
Confidence 4
No 11
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=7.1e-22 Score=221.71 Aligned_cols=429 Identities=18% Similarity=0.238 Sum_probs=316.3
Q ss_pred CCCCCHHHHHHHHHHhcc-CChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHccCCCH
Q 004093 18 ADKYNVETAEILANSALH-LPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAV---NNDDATKQLFSRCLLICLQV 93 (774)
Q Consensus 18 ~nP~d~~~W~~l~~~~~~-~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~---~n~~~a~~ifeRaL~~~p~~ 93 (774)
.|++++.....|+..++. +++++.+..-..+...+|.+ ..+|+.|+.-+..+ .+..++..+|+++|..+.++
T Consensus 108 i~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~----~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v 183 (881)
T KOG0128|consen 108 INSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLP----PHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSV 183 (881)
T ss_pred ccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccc
Confidence 789999999988886654 67777777778889999999 99999999988754 67889999999999999999
Q ss_pred HHHHHHHHHHHHHhhc-cCCccHHHHHHHHHHHHHhcCCCCCCh-HhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHH
Q 004093 94 PLWRCYIRFIRKVYEK-KGTEGQEETRKAFDFMLSHVGSDISSG-PIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRA 171 (774)
Q Consensus 94 ~lW~~Yl~~~~~~~~~-~~~~~~e~ar~~ye~aL~~vg~d~~s~-~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqra 171 (774)
.+|..|+.|.-...+. ...++.+..|.+|+++|+.+|.|...+ .+|..|++|+.. |-.+-..+.+..++.+.
T Consensus 184 ~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~------~l~n~~~~qv~a~~~~e 257 (881)
T KOG0128|consen 184 PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVT------YLCNVEQRQVIALFVRE 257 (881)
T ss_pred hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHH
Confidence 9999999999876542 123678999999999999999999877 599999999976 44444557788999999
Q ss_pred HcccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHH
Q 004093 172 VVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAV-YRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKR 250 (774)
Q Consensus 172 l~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i-~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~ 250 (774)
++.|+......|.-+..++..+ +......+..|..- -+.+..|++.+.. +..-...|+.
T Consensus 258 l~~~~D~~~~~~~~~~~sk~h~--------~~~~~~~~~~a~~~l~~~~~~~e~~~q~------------~~~~~q~~~~ 317 (881)
T KOG0128|consen 258 LKQPLDEDTRGWDLSEQSKAHV--------YDVETKKLDDALKNLAKILFKFERLVQK------------EPIKDQEWMS 317 (881)
T ss_pred HhccchhhhhHHHHHHHHhcch--------HHHHhccHHHHHHHHHHHHHHHHHHhhh------------hHHHHHHHHH
Confidence 9998544333332222222111 11111222222221 1222233433321 1223468999
Q ss_pred HHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004093 251 LLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGS-IDAAIKVFQRALKALPDSEMLRYAFAEL 329 (774)
Q Consensus 251 yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~-~e~A~~v~erAl~~~P~~~~l~~~~a~l 329 (774)
||+||+.+ +..-|+...++|++...+...+.|+.|+.++...-+ .+.+..++-||++.||....||-.+...
T Consensus 318 yidfe~~~-------G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallA 390 (881)
T KOG0128|consen 318 YIDFEKKS-------GDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLA 390 (881)
T ss_pred HHHHHHhc-------CCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHH
Confidence 99999975 455678899999999999999999999998865433 4567889999999999999999877644
Q ss_pred HHHh-CCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc------CHHHHHHHHHHHhc-------C-CCCCHHHHHH
Q 004093 330 EESR-GAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE------GVEAARKYFLDARK-------S-PNFTYHVYVA 394 (774)
Q Consensus 330 ~e~~-g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~------~~~~Ar~if~~al~-------~-~~~~~~~~i~ 394 (774)
+++. .........+++.+... ..++..|..+.++.+ +++..|+.|++|.. . .....++...
T Consensus 391 leR~re~~~vI~~~l~~~ls~~----~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~ 466 (881)
T KOG0128|consen 391 LERNREEITVIVQNLEKDLSMT----VELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQL 466 (881)
T ss_pred HHhcCcchhhHHHHHHHHHHHH----HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 4443 33333444555555432 224555555555443 45667777887764 2 3345778888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHH
Q 004093 395 YALMAFCQDKDPKLAHNVFEAGLKRFMHEPA-YILEYADFLSRLNDDRNIRALFERALSSLP-PEESIEVWKRFTQFEQM 472 (774)
Q Consensus 395 ~A~lE~~~~gd~~~A~~ife~al~~~p~~~~-l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p-~e~~~~lw~~~~~fE~~ 472 (774)
||.+|+.+.++.+.||.|+...+.....+.. .|+.|++++...|+..+||.++.+|+.... ++....+++.|..||.+
T Consensus 467 wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere 546 (881)
T KOG0128|consen 467 WAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFERE 546 (881)
T ss_pred HHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhc
Confidence 9999999889999999999999887666655 999999999999999999999999998543 35578999999999999
Q ss_pred hCCHHHHHHH-HHHHH
Q 004093 473 YGDLDSTLKV-EQRRK 487 (774)
Q Consensus 473 ~Gd~~~i~kv-~~R~~ 487 (774)
+|+++.+..+ +++.+
T Consensus 547 ~gtl~~~~~~~~~~~p 562 (881)
T KOG0128|consen 547 YGTLESFDLCPEKVLP 562 (881)
T ss_pred cccHHHHhhhHHhhcc
Confidence 9999876553 33333
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=5.6e-21 Score=207.32 Aligned_cols=376 Identities=15% Similarity=0.179 Sum_probs=299.2
Q ss_pred hccccCCCCCHHHHHHHHHHhcc-CChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004093 13 NITGVADKYNVETAEILANSALH-LPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL 91 (774)
Q Consensus 13 ~i~~~~nP~d~~~W~~l~~~~~~-~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p 91 (774)
.|. .+|.--+++..+++.++. +.+.+|..+|+.++++.|.. .+.|+.++...+..|+.+.|-+.|..+|+..|
T Consensus 108 a~r--~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~f----ida~inla~al~~~~~~~~a~~~~~~alqlnP 181 (966)
T KOG4626|consen 108 AIR--KNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKF----IDAYINLAAALVTQGDLELAVQCFFEALQLNP 181 (966)
T ss_pred hhh--ccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchh----hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCc
Confidence 445 889999999999997765 57999999999999999999 99999999999999999999999999999888
Q ss_pred CHHHHHHHH-HHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHH
Q 004093 92 QVPLWRCYI-RFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQR 170 (774)
Q Consensus 92 ~~~lW~~Yl-~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqr 170 (774)
+.---...+ ...+..+ .++.+..+|.+|++. +|.-...|.++.-.... +|.+-.+..-|++
T Consensus 182 ~l~ca~s~lgnLlka~G------rl~ea~~cYlkAi~~---qp~fAiawsnLg~~f~~---------~Gei~~aiq~y~e 243 (966)
T KOG4626|consen 182 DLYCARSDLGNLLKAEG------RLEEAKACYLKAIET---QPCFAIAWSNLGCVFNA---------QGEIWLAIQHYEE 243 (966)
T ss_pred chhhhhcchhHHHHhhc------ccchhHHHHHHHHhh---CCceeeeehhcchHHhh---------cchHHHHHHHHHH
Confidence 643223333 3333333 367888999977764 45456789888776553 6888899999999
Q ss_pred HHcccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHH
Q 004093 171 AVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKR 250 (774)
Q Consensus 171 al~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~ 250 (774)
|+++..+..... ...-+ ++.| ...|++|...| ++++. +.|... ..+-+
T Consensus 244 AvkldP~f~dAY----iNLGn---------V~ke-~~~~d~Avs~Y------~rAl~-----lrpn~A-------~a~gN 291 (966)
T KOG4626|consen 244 AVKLDPNFLDAY----INLGN---------VYKE-ARIFDRAVSCY------LRALN-----LRPNHA-------VAHGN 291 (966)
T ss_pred hhcCCCcchHHH----hhHHH---------HHHH-HhcchHHHHHH------HHHHh-----cCCcch-------hhccc
Confidence 998865543321 11100 0111 12344444333 33332 233321 00000
Q ss_pred H--HHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004093 251 L--LTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAE 328 (774)
Q Consensus 251 y--i~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~ 328 (774)
. |-+|. +..+-++..|+|||...|++++.+.+++..+...|+..+|...|.+|+..||+..+....++.
T Consensus 292 la~iYyeq---------G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 292 LACIYYEQ---------GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred eEEEEecc---------ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 0 01122 455677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHH
Q 004093 329 LEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKL 408 (774)
Q Consensus 329 l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~ 408 (774)
++...|++++|..+|.+++...|. .+.++..++-++..+|++++|...|+.|+...+...+.|.+.+...-. .|+.+.
T Consensus 363 i~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke-~g~v~~ 440 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKE-MGDVSA 440 (966)
T ss_pred HHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHH-hhhHHH
Confidence 999999999999999999999997 788999999999999999999999999999988889999998886444 599999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 409 AHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 409 A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
|...|++++...|.-++.....+..+...|+..+|..-|+.||..-|
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999999766
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=1.3e-19 Score=221.61 Aligned_cols=407 Identities=14% Similarity=0.075 Sum_probs=277.2
Q ss_pred CCCCCHHHHHHHHHHh-ccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHH
Q 004093 18 ADKYNVETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPL 95 (774)
Q Consensus 18 ~nP~d~~~W~~l~~~~-~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p-~~~l 95 (774)
..|.+...|..++..+ ..+++++|..+|++++...|.+ ...|..++.++...|++++|.++|++++...| +...
T Consensus 460 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 535 (899)
T TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDF----FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA 535 (899)
T ss_pred hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH
Confidence 6889999999998854 5578999999999999999999 99999999999999999999999999998865 5688
Q ss_pred HHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHccc
Q 004093 96 WRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTP 175 (774)
Q Consensus 96 W~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P 175 (774)
|..++....+.++ .+.+...|++++.. +|.....|...+.... ..++.+.+..+|++++...
T Consensus 536 ~~~l~~~~~~~~~------~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 536 ILALAGLYLRTGN------EEEAVAWLEKAAEL---NPQEIEPALALAQYYL---------GKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHHHHHHcCC------HHHHHHHHHHHHHh---CccchhHHHHHHHHHH---------HCCCHHHHHHHHHHHHHcC
Confidence 8888887766544 67888899877654 4556677777777654 3578889999999998653
Q ss_pred CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHH
Q 004093 176 THHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFE 255 (774)
Q Consensus 176 ~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~E 255 (774)
..+. .+|......... .++|..|...+++. +. ..|.. ...|..+....
T Consensus 598 ~~~~-~~~~~l~~~~~~-------------~~~~~~A~~~~~~~------~~-----~~~~~-------~~~~~~l~~~~ 645 (899)
T TIGR02917 598 PDSP-EAWLMLGRAQLA-------------AGDLNKAVSSFKKL------LA-----LQPDS-------ALALLLLADAY 645 (899)
T ss_pred CCCH-HHHHHHHHHHHH-------------cCCHHHHHHHHHHH------HH-----hCCCC-------hHHHHHHHHHH
Confidence 3322 234333222111 24555555554431 11 11211 11233222222
Q ss_pred hcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q 004093 256 KGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGA 335 (774)
Q Consensus 256 k~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~ 335 (774)
... +..+.+..+|++++...|.+...|..++..+...|++++|.++++++....|.+...+...+.++...|+
T Consensus 646 ~~~-------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 646 AVM-------KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHc-------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCC
Confidence 111 2345566677777777777777777777777777777777777777777777776667667777777777
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 004093 336 IAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEA 415 (774)
Q Consensus 336 ~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~ 415 (774)
+++|...|++++...+.. ..+..++.++.+.|++++|.+.++++++..+....++...+.+.... |+.+.|..+|++
T Consensus 719 ~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~ 795 (899)
T TIGR02917 719 YPAAIQAYRKALKRAPSS--QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQ-KDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 777777777777666652 45566666666777777777777777765555566666666654443 677777777777
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 416 GLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 416 al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
+++..|+++..+..++..+...|+ .+|+.++++++...| +...+|..+..+....|+.+.+.++++++.+..|
T Consensus 796 ~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 796 VVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP--NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777777776666666666666666 667777777776655 3345566666666666777777777777777666
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=2.6e-19 Score=218.97 Aligned_cols=411 Identities=15% Similarity=0.094 Sum_probs=332.1
Q ss_pred hhccccCCCCCHHHHHHHHH-HhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004093 12 ENITGVADKYNVETAEILAN-SALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC 90 (774)
Q Consensus 12 ~~i~~~~nP~d~~~W~~l~~-~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~ 90 (774)
+.+. .+|.+...+..++. ..+.+.+++|..++++++..+|.+ ...|..++..+...|++++|.++|++++...
T Consensus 422 ~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 422 TAAQ--LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDN----ASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred HHHh--hCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 3455 67888888887777 456678999999999999999999 9999999999999999999999999999987
Q ss_pred CC-HHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHH
Q 004093 91 LQ-VPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQ 169 (774)
Q Consensus 91 p~-~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYq 169 (774)
|+ ...|..++......++ .+.+.+.|+++++. +|....+|..++..... .++.+++...|+
T Consensus 496 ~~~~~~~~~la~~~~~~g~------~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~ 557 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGN------PDDAIQRFEKVLTI---DPKNLRAILALAGLYLR---------TGNEEEAVAWLE 557 (899)
T ss_pred CCcHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHH---------cCCHHHHHHHHH
Confidence 54 5778777776665443 67899999977764 45667888888887543 578899999999
Q ss_pred HHHcccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHH
Q 004093 170 RAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWK 249 (774)
Q Consensus 170 ral~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~ 249 (774)
+++.....+.. .+......-.. .+++..|..++++. +. ..|.. ...|.
T Consensus 558 ~~~~~~~~~~~-~~~~l~~~~~~-------------~~~~~~A~~~~~~~------~~-----~~~~~-------~~~~~ 605 (899)
T TIGR02917 558 KAAELNPQEIE-PALALAQYYLG-------------KGQLKKALAILNEA------AD-----AAPDS-------PEAWL 605 (899)
T ss_pred HHHHhCccchh-HHHHHHHHHHH-------------CCCHHHHHHHHHHH------HH-----cCCCC-------HHHHH
Confidence 99975433332 22222222111 35667777666542 21 11221 23565
Q ss_pred HHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004093 250 RLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAEL 329 (774)
Q Consensus 250 ~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l 329 (774)
.+....... +..+.++..|++++...|.++..|..++.++...|++++|..+|++++...|++...|..++.+
T Consensus 606 ~l~~~~~~~-------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 678 (899)
T TIGR02917 606 MLGRAQLAA-------GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQL 678 (899)
T ss_pred HHHHHHHHc-------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 554433222 3456788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHH
Q 004093 330 EESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLA 409 (774)
Q Consensus 330 ~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A 409 (774)
+...|++++|..+++.+....+. ...++..++..+.+.|++++|...|++++...+.. .++...+.+.... |+.+.|
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~A 755 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLAS-GNTAEA 755 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHC-CCHHHH
Confidence 99999999999999999998876 56788888999999999999999999999865543 6667777776564 999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004093 410 HNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEA 489 (774)
Q Consensus 410 ~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~ 489 (774)
.+.+++.++..|++..++...+.++...|+.++|..+|+++++..| +...++..+.......|+ ..+....+++.+.
T Consensus 756 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 756 VKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP--DNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999888 456777777777778898 7799999999988
Q ss_pred cc
Q 004093 490 LS 491 (774)
Q Consensus 490 ~p 491 (774)
.|
T Consensus 833 ~~ 834 (899)
T TIGR02917 833 AP 834 (899)
T ss_pred CC
Confidence 77
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=2e-20 Score=202.99 Aligned_cols=409 Identities=14% Similarity=0.126 Sum_probs=314.3
Q ss_pred CCCCCHHHHHHHHH-HhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHH
Q 004093 18 ADKYNVETAEILAN-SALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ-VPL 95 (774)
Q Consensus 18 ~nP~d~~~W~~l~~-~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~-~~l 95 (774)
.||.+.+.-..+.. ..+....+....--.-+++..|.. .+.+-.|++.....|.++.|..+|+.+++..|+ ++.
T Consensus 77 ~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~----ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida 152 (966)
T KOG4626|consen 77 EDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQG----AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDA 152 (966)
T ss_pred cCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchH----HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHH
Confidence 34444444444333 222233444333344566666666 888889999999999999999999999999875 699
Q ss_pred HHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcc-
Q 004093 96 WRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT- 174 (774)
Q Consensus 96 W~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~- 174 (774)
|...+.-..+.++ .+.+-++|..||+. +|.....-......++. .|++.+|...|++||.+
T Consensus 153 ~inla~al~~~~~------~~~a~~~~~~alql---nP~l~ca~s~lgnLlka---------~Grl~ea~~cYlkAi~~q 214 (966)
T KOG4626|consen 153 YINLAAALVTQGD------LELAVQCFFEALQL---NPDLYCARSDLGNLLKA---------EGRLEEAKACYLKAIETQ 214 (966)
T ss_pred HhhHHHHHHhcCC------CcccHHHHHHHHhc---CcchhhhhcchhHHHHh---------hcccchhHHHHHHHHhhC
Confidence 9998887776655 45788999977764 56555566666666653 68999999999999964
Q ss_pred cCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHH
Q 004093 175 PTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTF 254 (774)
Q Consensus 175 P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~ 254 (774)
|..-+ .|... ...|+.+-.+..-+..|++++. +.|... -.||..
T Consensus 215 p~fAi--awsnL-------------------g~~f~~~Gei~~aiq~y~eAvk-----ldP~f~----------dAYiNL 258 (966)
T KOG4626|consen 215 PCFAI--AWSNL-------------------GCVFNAQGEIWLAIQHYEEAVK-----LDPNFL----------DAYINL 258 (966)
T ss_pred Cceee--eehhc-------------------chHHhhcchHHHHHHHHHHhhc-----CCCcch----------HHHhhH
Confidence 53211 12111 1112222233334445666664 344321 133332
Q ss_pred HhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 004093 255 EKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 334 (774)
Q Consensus 255 Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g 334 (774)
-.- ..+.....|++.+|++++..-|++..++-+++..+.++|.++.|+..|+|||...|+-.+.+..+|..+...|
T Consensus 259 GnV----~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G 334 (966)
T KOG4626|consen 259 GNV----YKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKG 334 (966)
T ss_pred HHH----HHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcc
Confidence 110 0012456788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 004093 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFE 414 (774)
Q Consensus 335 ~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife 414 (774)
+..+|..+|.+++...++ .+.+...++.++++++.++.|..+|++++...+.......++|.+ |..+|++++|...|+
T Consensus 335 ~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i-~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 335 SVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASI-YKQQGNLDDAIMCYK 412 (966)
T ss_pred chHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHH-HHhcccHHHHHHHHH
Confidence 999999999999999997 688999999999999999999999999999766667778888877 455699999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc
Q 004093 415 AGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 415 ~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk 492 (774)
.++...|+-++-+...++-+..+|+...|.+.|+|||...| .-.+-..........-|+...+..-++.+.+.-|+
T Consensus 413 ealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP--t~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 413 EALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP--TFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc--HHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 99999999999888999999999999999999999999988 44555556666666789999999999999998883
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=1e-17 Score=210.93 Aligned_cols=408 Identities=13% Similarity=0.054 Sum_probs=290.4
Q ss_pred hccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---HHHHHHHHHHHH-----
Q 004093 33 ALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ---VPLWRCYIRFIR----- 104 (774)
Q Consensus 33 ~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~---~~lW~~Yl~~~~----- 104 (774)
+..+++++|...|+++++.+|.+ ..+|..++..+.+.|++++|+..|++++...|+ ...|..++....
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~----~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKD----SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 34568999999999999999999 999999999999999999999999999998764 245644432100
Q ss_pred HHhh-ccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCccHHHHH
Q 004093 105 KVYE-KKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLW 183 (774)
Q Consensus 105 ~~~~-~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~~~e~l~ 183 (774)
.... .......+.+...|++++.. +|.....|........ ..++.++|.+.|++++.....+... +
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~---~P~~~~a~~~Lg~~~~---------~~g~~~eA~~~y~~aL~~~p~~~~a-~ 422 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQV---DNTDSYAVLGLGDVAM---------ARKDYAAAERYYQQALRMDPGNTNA-V 422 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH---------HCCCHHHHHHHHHHHHHhCCCCHHH-H
Confidence 0000 00123578899999987765 5666677777776654 3688999999999999763333221 2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCC
Q 004093 184 KDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYC-EEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRI 262 (774)
Q Consensus 184 ~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~-~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~ 262 (774)
........ ...+++|...++....-. +.+.. ....-....+.........
T Consensus 423 ~~L~~l~~--------------~~~~~~A~~~l~~l~~~~~~~~~~----------~~~~l~~~~~~~~a~~~~~----- 473 (1157)
T PRK11447 423 RGLANLYR--------------QQSPEKALAFIASLSASQRRSIDD----------IERSLQNDRLAQQAEALEN----- 473 (1157)
T ss_pred HHHHHHHH--------------hcCHHHHHHHHHhCCHHHHHHHHH----------HHHHhhhhHHHHHHHHHHH-----
Confidence 11111100 112233333222100000 00000 0000000111111111111
Q ss_pred CchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 004093 263 DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKL 342 (774)
Q Consensus 263 d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~i 342 (774)
.+..+.++..|++++...|+++.+++.++..+.+.|++++|...|++++...|.+...++.++.++...++.++|...
T Consensus 474 --~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 474 --QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred --CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 134577889999999999999999999999999999999999999999999999998888888887777777777777
Q ss_pred HHHHhc----------------------------------------CCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 004093 343 YESLLT----------------------------------------DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDAR 382 (774)
Q Consensus 343 yek~l~----------------------------------------~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al 382 (774)
++++.. ..|. ...++..++.++.+.|++++|+..|++++
T Consensus 552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~-~~~~~~~La~~~~~~g~~~~A~~~y~~al 630 (1157)
T PRK11447 552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP-STRIDLTLADWAQQRGDYAAARAAYQRVL 630 (1157)
T ss_pred HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 665421 1232 34567788888889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchh----
Q 004093 383 KSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEE---- 458 (774)
Q Consensus 383 ~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~---- 458 (774)
+..+....+++..+.+.... |+.+.|++.|+.+++..|+++..+..++..+...|++++|..+|++++...+...
T Consensus 631 ~~~P~~~~a~~~la~~~~~~-g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~ 709 (1157)
T PRK11447 631 TREPGNADARLGLIEVDIAQ-GDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSME 709 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchh
Confidence 87777788898888876664 9999999999999988888888888888888899999999999999998654221
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 004093 459 SIEVWKRFTQFEQMYGDLDSTLKVEQRRKEAL 490 (774)
Q Consensus 459 ~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~ 490 (774)
...++.....+....|+.+.+...++++....
T Consensus 710 ~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 710 SALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 24566667788888999999999999987644
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=2.7e-17 Score=194.57 Aligned_cols=404 Identities=15% Similarity=0.093 Sum_probs=193.7
Q ss_pred HHHHH-HhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHH
Q 004093 27 EILAN-SALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ-VPLWRCYIRFIR 104 (774)
Q Consensus 27 ~~l~~-~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~-~~lW~~Yl~~~~ 104 (774)
...+. ....+++++|...|++++...|+. .+|...+..+.+.|++++|.+.|++++...|+ .+.|........
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~-----~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDP-----VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCch-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34444 334568999999999999999954 68999999999999999999999999998765 578877766655
Q ss_pred HHhhccCCccHHHHHHHHHHHHHhcC---------------------------CCCCChHhHHHHHHHHhhCCcCchHHH
Q 004093 105 KVYEKKGTEGQEETRKAFDFMLSHVG---------------------------SDISSGPIWLEYITFLKSLPALNAQEE 157 (774)
Q Consensus 105 ~~~~~~~~~~~e~ar~~ye~aL~~vg---------------------------~d~~s~~iW~~yi~fe~~~~~~~~~~~ 157 (774)
..++ .+.+...|..++..-+ .++.....|.....+......
T Consensus 206 ~lg~------~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------ 273 (615)
T TIGR00990 206 GLGK------YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRP------ 273 (615)
T ss_pred HcCC------HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccC------
Confidence 5443 3344444433322211 111111222222222110000
Q ss_pred hHHHHHHHHHHHHHHcccCccHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 004093 158 SQRMIAIRKAYQRAVVTPTHHVEQLWKDYEN-FENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPT 236 (774)
Q Consensus 158 ~~~~~~ar~vYqral~~P~~~~e~l~~~y~~-fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~ 236 (774)
......|...+.............+.. .+.. ....|..|...+.+ .+... ...|.
T Consensus 274 ----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~------------~~~~y~~A~~~~~~------al~~~--~~~~~ 329 (615)
T TIGR00990 274 ----KPRPAGLEDSNELDEETGNGQLQLGLKSPESK------------ADESYEEAARAFEK------ALDLG--KLGEK 329 (615)
T ss_pred ----CcchhhhhcccccccccccchHHHHHHHHHhh------------hhhhHHHHHHHHHH------HHhcC--CCChh
Confidence 000000111111100000000000000 0000 01233344433332 11100 00010
Q ss_pred CCchhHHHHHHHHHHH--HHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004093 237 GSYKEEQQWIAWKRLL--TFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALK 314 (774)
Q Consensus 237 ~~~~~~~q~~lW~~yi--~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~ 314 (774)
....|...- .+.. +..+.++..|++++..+|.+...|+.++..+...|++++|+..|++++.
T Consensus 330 -------~a~a~~~lg~~~~~~---------g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 330 -------EAIALNLRGTFKCLK---------GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALK 393 (615)
T ss_pred -------hHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 001111111 1111 1233445555555555555555555555555555555555555555555
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHH
Q 004093 315 ALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA 394 (774)
Q Consensus 315 ~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~ 394 (774)
..|++..+|+.++.++...|++++|...|++++...|. ...+|+.++..+.+.|++++|...|+++++..+....+|..
T Consensus 394 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~ 472 (615)
T TIGR00990 394 LNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNY 472 (615)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 55555555555555555555555555555555555554 34455555555555555555555555555544444555555
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCCHH-------HHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHH
Q 004093 395 YALMAFCQDKDPKLAHNVFEAGLKRFMHEPA-------YILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFT 467 (774)
Q Consensus 395 ~A~lE~~~~gd~~~A~~ife~al~~~p~~~~-------l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~ 467 (774)
++.+.... |+++.|++.|++++...|+... ++...+.++...|++++|..+|++++...| +....|..+.
T Consensus 473 lg~~~~~~-g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p--~~~~a~~~la 549 (615)
T TIGR00990 473 YGELLLDQ-NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP--ECDIAVATMA 549 (615)
T ss_pred HHHHHHHc-cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--CcHHHHHHHH
Confidence 55444332 5555555555555555443210 111111222224555555555555555444 2233444444
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 468 QFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 468 ~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
......|+.+.+.+.++++.+..+
T Consensus 550 ~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 550 QLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHHHhc
Confidence 444455555555555555555543
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=1.7e-17 Score=209.05 Aligned_cols=423 Identities=14% Similarity=0.075 Sum_probs=279.6
Q ss_pred CCCCCHHHHHHHHHH-hccCChhhHHHHHHHHHHhCCCCCcccHHHH----------------HHHHHHHHHcCCHHHHH
Q 004093 18 ADKYNVETAEILANS-ALHLPVAQAAPIYEQLLSVFPTAVSFIAKFW----------------KQYVEAYMAVNNDDATK 80 (774)
Q Consensus 18 ~nP~d~~~W~~l~~~-~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W----------------~~y~~~e~~~~n~~~a~ 80 (774)
.+|.|.+++...++. +..++.++|...++++++..|.+ ..+| ...+.+....|++++|.
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~----~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~ 132 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDS----NAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEAL 132 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHH
Confidence 789999999888884 45578999999999999999998 7775 34455667789999999
Q ss_pred HHHHHHHccCC-CHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhH
Q 004093 81 QLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQ 159 (774)
Q Consensus 81 ~ifeRaL~~~p-~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~ 159 (774)
++|++++...| +..+=..|...+... ....+.+...|+++++ .+|.+..+|..+...+.. .+
T Consensus 133 ~~~~~~l~~~p~~~~la~~y~~~~~~~-----~g~~~~A~~~L~~ll~---~~P~~~~~~~~LA~ll~~---------~g 195 (1157)
T PRK11447 133 ASYDKLFNGAPPELDLAVEYWRLVAKL-----PAQRPEAINQLQRLNA---DYPGNTGLRNTLALLLFS---------SG 195 (1157)
T ss_pred HHHHHHccCCCCChHHHHHHHHHHhhC-----CccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHc---------cC
Confidence 99999988754 334333333332211 2246778888886665 456777888888887643 46
Q ss_pred HHHHHHHHHHHHHcccCccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 004093 160 RMIAIRKAYQRAVVTPTHHV--EQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTG 237 (774)
Q Consensus 160 ~~~~ar~vYqral~~P~~~~--e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~ 237 (774)
+.++|...|++++..+.... ..+|........ .. .-+...+..+...|.....+...+..+...... ... |..
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~-~~-~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~--~~d-p~~ 270 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMP-VS-DASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ--LAD-PAF 270 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccC-CC-hhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh--ccC-cch
Confidence 78888999998887654322 222311110000 00 000011111111111111111111111111110 000 110
Q ss_pred CchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004093 238 SYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP 317 (774)
Q Consensus 238 ~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P 317 (774)
...-...+.+.. +..+.++..|++++..+|.++++|+.++..+.+.|++++|+..|+++++..|
T Consensus 271 -------~~~~~G~~~~~~---------g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p 334 (1157)
T PRK11447 271 -------RARAQGLAAVDS---------GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDP 334 (1157)
T ss_pred -------HHHHHHHHHHHC---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 000001111111 3456678889999999999999999999999999999999999999999888
Q ss_pred CCHH------------HH--HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 004093 318 DSEM------------LR--YAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARK 383 (774)
Q Consensus 318 ~~~~------------l~--~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~ 383 (774)
++.. .| ...+..+...|++++|+..|++++...|. ...++..++.++...|++++|++.|+++++
T Consensus 335 ~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~ 413 (1157)
T PRK11447 335 HSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALR 413 (1157)
T ss_pred CccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6532 11 23355666788999999999999998886 567888888899999999999999999987
Q ss_pred CCCCCHHHHHHHHH------------------------------------------HHHhcCCCHHHHHHHHHHHHHHcC
Q 004093 384 SPNFTYHVYVAYAL------------------------------------------MAFCQDKDPKLAHNVFEAGLKRFM 421 (774)
Q Consensus 384 ~~~~~~~~~i~~A~------------------------------------------lE~~~~gd~~~A~~ife~al~~~p 421 (774)
..+....++..++. .... .|+.+.|++.|+++++..|
T Consensus 414 ~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~-~g~~~eA~~~~~~Al~~~P 492 (1157)
T PRK11447 414 MDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN-QGKWAQAAELQRQRLALDP 492 (1157)
T ss_pred hCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCC
Confidence 65444444332222 1222 4899999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 422 HEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRR 486 (774)
Q Consensus 422 ~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~ 486 (774)
+++.++...+..+...|++++|..+|++++...| .....+..+..+....|+.+.+..+++++
T Consensus 493 ~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P--~~~~~~~a~al~l~~~~~~~~Al~~l~~l 555 (1157)
T PRK11447 493 GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP--NDPEQVYAYGLYLSGSDRDRAALAHLNTL 555 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999877 33444555555666778877777666553
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=6.2e-17 Score=191.49 Aligned_cols=397 Identities=10% Similarity=-0.009 Sum_probs=281.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHH
Q 004093 61 KFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWL 140 (774)
Q Consensus 61 ~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~ 140 (774)
..++..+....+.|+++.|...|++++...|+...|...+......++ .+.+...|+.+++ ++|....+|.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~------~~~Ai~~~~~al~---l~p~~~~a~~ 198 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGD------WEKVVEDTTAALE---LDPDYSKALN 198 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCC------HHHHHHHHHHHHH---cCCCCHHHHH
Confidence 346677888889999999999999999999987777666655554443 6788888887775 4677778888
Q ss_pred HHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004093 141 EYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERK 220 (774)
Q Consensus 141 ~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~ 220 (774)
....... ..+++++|...|..++.++......+...+...........++..+....... .+ ...+.
T Consensus 199 ~~a~a~~---------~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~-~~---~~~~~ 265 (615)
T TIGR00990 199 RRANAYD---------GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENL-PS---VTFVG 265 (615)
T ss_pred HHHHHHH---------HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CC---HHHHH
Confidence 8776644 35788899888887776543322111111111100000000111111000000 00 00000
Q ss_pred HHHHHhhh--------ccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHh---cCCCHHHH
Q 004093 221 KYCEEIDW--------NMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMY---LYHYPDIW 289 (774)
Q Consensus 221 ~~~~~L~~--------~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~---~p~~~~iW 289 (774)
.|...+.. ......+.. ......+...+ .+... ....+.+..+|++++.. .|....+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~--~e~~~------~~~y~~A~~~~~~al~~~~~~~~~a~a~ 334 (615)
T TIGR00990 266 NYLQSFRPKPRPAGLEDSNELDEET---GNGQLQLGLKS--PESKA------DESYEEAARAFEKALDLGKLGEKEAIAL 334 (615)
T ss_pred HHHHHccCCcchhhhhccccccccc---ccchHHHHHHH--HHhhh------hhhHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 01110000 000011110 01112222222 22211 13456678899999986 47788899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc
Q 004093 290 YDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE 369 (774)
Q Consensus 290 ~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~ 369 (774)
...+.++...|++++|+..|++++...|.+...|+.++.++...|++++|...|+++++..|. ...+|..++.++...|
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g 413 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKG 413 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999999887 5789999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004093 370 GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFER 449 (774)
Q Consensus 370 ~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEr 449 (774)
++++|+..|+++++..+.....++..+.+.+.. |+++.|...|+++++.+|+++.++..++..+...|++++|+..|++
T Consensus 414 ~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 414 EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE-GSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999998777788899999887775 9999999999999999999999999999999999999999999999
Q ss_pred HHhcCCchh-----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc
Q 004093 450 ALSSLPPEE-----SIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 450 aL~~~p~e~-----~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk 492 (774)
++...|... ...++.....+....|+++.+.++++++.+..|+
T Consensus 493 Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 493 AIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred HHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 999766321 1233444333433569999999999999988774
No 20
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.84 E-value=9e-18 Score=181.00 Aligned_cols=400 Identities=14% Similarity=0.207 Sum_probs=287.4
Q ss_pred HHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHhhccCCccHHHHHHHHHH
Q 004093 46 EQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ-VPLWRCYIRFIRKVYEKKGTEGQEETRKAFDF 124 (774)
Q Consensus 46 eral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~-~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~ 124 (774)
++-++.+|++ .+-|..+++-.... .+++++..|++.+...|+ ...|..|++-+...++ .+.+.++|.|
T Consensus 10 ~~rie~nP~d----i~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skd------fe~VEkLF~R 78 (656)
T KOG1914|consen 10 RERIEENPYD----IDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKD------FESVEKLFSR 78 (656)
T ss_pred HHHHhcCCcc----HHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhh------HHHHHHHHHH
Confidence 6778999999 99999999866555 999999999999999876 5999999999998776 7899999999
Q ss_pred HHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHc-ccCc-cHHHHHHHHHHHHHHhhHHHHHHHH
Q 004093 125 MLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVV-TPTH-HVEQLWKDYENFENSVSRQLAKGLL 202 (774)
Q Consensus 125 aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~-~P~~-~~e~l~~~y~~fE~~~~~~lak~~l 202 (774)
+|..+- +..+|..|+.+..+..... .+.-....+.|+-++. +-+. .-..+|.+|..|.+.+..
T Consensus 79 CLvkvL----nlDLW~lYl~YVR~~~~~~----~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea------- 143 (656)
T KOG1914|consen 79 CLVKVL----NLDLWKLYLSYVRETKGKL----FGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEA------- 143 (656)
T ss_pred HHHHHh----hHhHHHHHHHHHHHHccCc----chHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccc-------
Confidence 998762 3689999999987653211 1112345566777773 3221 125899999999776421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCC------CchhchHHHHHHHH
Q 004093 203 SEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRI------DTASSNKRIIFTYE 276 (774)
Q Consensus 203 ~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~------d~~~~~~r~~~~ye 276 (774)
.++|++-.+|-.-|..|.++|...+.++ -.+|+.|..||.+-..-+ |..-.+-.++.+|+
T Consensus 144 ---~gk~ee~QRI~~vRriYqral~tPm~nl-----------EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~q 209 (656)
T KOG1914|consen 144 ---VGKYEENQRITAVRRIYQRALVTPMHNL-----------EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQ 209 (656)
T ss_pred ---cccHHHHHHHHHHHHHHHHHhcCccccH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 2344444455555555666765322222 359999999998521111 22222333344454
Q ss_pred HHHHhc-------CC-----------CHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004093 277 QCLMYL-------YH-----------YPDIWYDYATWNAKSGS--------IDAAIKVFQRALKALPDSEMLRYAFAELE 330 (774)
Q Consensus 277 raL~~~-------p~-----------~~~iW~~ya~~l~~~g~--------~e~A~~v~erAl~~~P~~~~l~~~~a~l~ 330 (774)
+..... |. ..++|.+++.|+.+++- .....-+|++++...+.++++|+.++.++
T Consensus 210 el~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl 289 (656)
T KOG1914|consen 210 ELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYL 289 (656)
T ss_pred HHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 443321 11 23689999999987652 23466789999999999999999999988
Q ss_pred HHhCC--------------HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC---HHHHHHHHHHHhcCCCCC-HHHH
Q 004093 331 ESRGA--------------IAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEG---VEAARKYFLDARKSPNFT-YHVY 392 (774)
Q Consensus 331 e~~g~--------------~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~---~~~Ar~if~~al~~~~~~-~~~~ 392 (774)
...++ -+++.++|++++.........++..|+.++...-+ .+..-.+++++++..... --+|
T Consensus 290 ~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~ 369 (656)
T KOG1914|consen 290 IEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVY 369 (656)
T ss_pred HHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceeh
Confidence 87766 57899999999986655567889999998887655 677777888887754332 3456
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 004093 393 VAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYI--LEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFE 470 (774)
Q Consensus 393 i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~--~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE 470 (774)
+.+..+..+. ..++.||.||.++-+..-..-.++ ..++.+++ .+|..-|..+||-.|.+++ ++...=..|++|-
T Consensus 370 ~~~mn~irR~-eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL 445 (656)
T KOG1914|consen 370 CQYMNFIRRA-EGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFL 445 (656)
T ss_pred hHHHHHHHHh-hhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHH
Confidence 6655554454 678999999999988532222333 34444433 5789999999999999998 6678888999999
Q ss_pred HHhCCHHHHHHHHHHHHHH
Q 004093 471 QMYGDLDSTLKVEQRRKEA 489 (774)
Q Consensus 471 ~~~Gd~~~i~kv~~R~~~~ 489 (774)
...|+-..+..+++|....
T Consensus 446 ~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHhCcchhHHHHHHHHHhc
Confidence 9999999999999998877
No 21
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.82 E-value=3e-18 Score=200.14 Aligned_cols=236 Identities=23% Similarity=0.304 Sum_probs=208.3
Q ss_pred HHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHH-hcCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004093 246 IAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLM-YLYH----YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE 320 (774)
Q Consensus 246 ~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~-~~p~----~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~ 320 (774)
-+|.+|++|...- ...+.++.+.++||. +++. --.+|..|..++...|.-+...++|+||++.|- ..
T Consensus 1459 i~WI~YMaf~Lel-------sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~ 1530 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLEL-------SEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD-AY 1530 (1710)
T ss_pred hHHHHHHHHHhhh-------hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hH
Confidence 3899999987643 234567889999998 4443 457999999999999988999999999999764 34
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC--CHHHHHHHHHH
Q 004093 321 MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF--TYHVYVAYALM 398 (774)
Q Consensus 321 ~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~--~~~~~i~~A~l 398 (774)
..+..++.+|+..+++++|.++|+.+++.... ...+|+.|++|+.++.+-++|+.++++|+++-+. ..++.-.+|+|
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q-~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ-TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc-hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 56778899999999999999999999998873 6789999999999999999999999999997554 35566779999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHhCCHH
Q 004093 399 AFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALS-SLPPEESIEVWKRFTQFEQMYGDLD 477 (774)
Q Consensus 399 E~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~-~~p~e~~~~lw~~~~~fE~~~Gd~~ 477 (774)
|+.+ ||.+++|.+||..+..+|.-.++|.-|++.++++++...+|.+|||++. .++..+...++..|++||.++||-.
T Consensus 1610 EFk~-GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKY-GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred Hhhc-CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 9997 9999999999999999999999999999999999999999999999998 5666788999999999999999999
Q ss_pred HHHHHHHHHHHHcc
Q 004093 478 STLKVEQRRKEALS 491 (774)
Q Consensus 478 ~i~kv~~R~~~~~p 491 (774)
.++.|..|+.+-+.
T Consensus 1689 ~vE~VKarA~EYv~ 1702 (1710)
T KOG1070|consen 1689 NVEYVKARAKEYVE 1702 (1710)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998775
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=4.3e-16 Score=184.60 Aligned_cols=347 Identities=12% Similarity=0.041 Sum_probs=264.1
Q ss_pred HHHhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHhh
Q 004093 30 ANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ-VPLWRCYIRFIRKVYE 108 (774)
Q Consensus 30 ~~~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~-~~lW~~Yl~~~~~~~~ 108 (774)
+..++.+++.+|..+++.++...|.. ...+..++...+..|+++.|...|++++...|+ .+.|...+......++
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~p~~----~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTAKNG----RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhCCCc----hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 34566789999999999999999999 999999999999999999999999999998764 6888888877766554
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcc-cCccHHHHHHHHH
Q 004093 109 KKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHVEQLWKDYE 187 (774)
Q Consensus 109 ~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~-P~~~~e~l~~~y~ 187 (774)
.+.+...|++++.. +|.....|...+..+.. .++.+.|..+|++++.. |.. .. .+....
T Consensus 126 ------~~~Ai~~l~~Al~l---~P~~~~a~~~la~~l~~---------~g~~~eA~~~~~~~~~~~P~~-~~-a~~~~~ 185 (656)
T PRK15174 126 ------YATVADLAEQAWLA---FSGNSQIFALHLRTLVL---------MDKELQAISLARTQAQEVPPR-GD-MIATCL 185 (656)
T ss_pred ------HHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHH---------CCChHHHHHHHHHHHHhCCCC-HH-HHHHHH
Confidence 67899999977764 56677888888887553 57889999999988764 433 22 221111
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHH--HHHHhcCCCCCCch
Q 004093 188 NFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRL--LTFEKGNPQRIDTA 265 (774)
Q Consensus 188 ~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~y--i~~Ek~n~~~~d~~ 265 (774)
.+.. .+++.+|..+++. .+.. .++... ..+... +.+..
T Consensus 186 ~l~~--------------~g~~~eA~~~~~~------~l~~----~~~~~~-------~~~~~l~~~l~~~--------- 225 (656)
T PRK15174 186 SFLN--------------KSRLPEDHDLARA------LLPF----FALERQ-------ESAGLAVDTLCAV--------- 225 (656)
T ss_pred HHHH--------------cCCHHHHHHHHHH------HHhc----CCCcch-------hHHHHHHHHHHHC---------
Confidence 1111 3566777666553 1211 111110 011111 11111
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDA----AIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKK 341 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~----A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~ 341 (774)
+..+.+...|++++...|.++.+|+.++..+...|++++ |...|++++...|++..++..++.++...|++++|..
T Consensus 226 g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~ 305 (656)
T PRK15174 226 GKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIP 305 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 345667889999999999999999999999999999885 8999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 004093 342 LYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM 421 (774)
Q Consensus 342 iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p 421 (774)
.|++++...|. ...++..++..+.+.|++++|+..|++++...+.....+...+.+... .|+.+.|++.|+++++..|
T Consensus 306 ~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~-~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 306 LLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ-AGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCh
Confidence 99999999987 578899999999999999999999999998766555555555555445 4999999999999999988
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 004093 422 HEPAYILEYADFLSRLNDDRNIRALFERALSSL 454 (774)
Q Consensus 422 ~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~ 454 (774)
++. ...+++|+..|.+++...
T Consensus 384 ~~~------------~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 384 SHL------------PQSFEEGLLALDGQISAV 404 (656)
T ss_pred hhc------------hhhHHHHHHHHHHHHHhc
Confidence 753 122345555555555543
No 23
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.79 E-value=1.2e-15 Score=163.95 Aligned_cols=412 Identities=16% Similarity=0.183 Sum_probs=257.8
Q ss_pred hhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHhhccCCccHH
Q 004093 38 VAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ-VPLWRCYIRFIRKVYEKKGTEGQE 116 (774)
Q Consensus 38 i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~-~~lW~~Yl~~~~~~~~~~~~~~~e 116 (774)
..++..+|.+++..|+.+ ..+|..|+.+..+.+++.++.+||..||..+|+ +++|..-+.++.+.+. +++
T Consensus 87 ~~rIv~lyr~at~rf~~D----~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~-----ni~ 157 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGD----VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL-----NIE 157 (568)
T ss_pred HHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc-----chH
Confidence 355778999999999999 999999999999999999999999999999874 7999999999988765 388
Q ss_pred HHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCc------------CchH-HHhHHHHHHHHHHHHHHc---ccCccHH
Q 004093 117 ETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPA------------LNAQ-EESQRMIAIRKAYQRAVV---TPTHHVE 180 (774)
Q Consensus 117 ~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~------------~~~~-~~~~~~~~ar~vYqral~---~P~~~~e 180 (774)
.+|.+|.++|+. +|++..+|..|.+++...-. .... ++..+.+.+-.+|--.+. .+...++
T Consensus 158 saRalflrgLR~---npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e 234 (568)
T KOG2396|consen 158 SARALFLRGLRF---NPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVE 234 (568)
T ss_pred HHHHHHHHHhhc---CCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcc
Confidence 999999988874 68899999999999764310 0000 111111122222221111 1111110
Q ss_pred -HHHHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHH-------------------------HHHHHHHHHHHHh
Q 004093 181 -QLWKDYENFENSVSRQLAKGLLSEYQS--------KYTSAR-------------------------AVYRERKKYCEEI 226 (774)
Q Consensus 181 -~l~~~y~~fE~~~~~~lak~~l~e~~~--------~y~~Ar-------------------------~i~k~~~~~~~~L 226 (774)
..... ..|. +.+.+.+++.... ...-|+ ..-.-...|++++
T Consensus 235 ~~~~~~-~d~~----kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v 309 (568)
T KOG2396|consen 235 LSVAEK-FDFL----KELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAV 309 (568)
T ss_pred hHHHHH-HHHH----HHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHH
Confidence 00000 0011 1111112211110 000011 1111112333333
Q ss_pred hhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 004093 227 DWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAI 306 (774)
Q Consensus 227 ~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~ 306 (774)
. .-.+..+|..||.|.......+ ......++..+|+.+...........-.|+..+.......+++
T Consensus 310 ~-------------~l~t~sm~e~YI~~~lE~~~~~-r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r 375 (568)
T KOG2396|consen 310 K-------------TLPTESMWECYITFCLERFTFL-RGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAR 375 (568)
T ss_pred H-------------HhhHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHh
Confidence 2 1123579999998765321111 1123445567888888877666666667766666555556677
Q ss_pred HHHHHHH-HhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHH---hcCCCCCcHHHHHHHHHHHHHh----cCHHHHHHH
Q 004093 307 KVFQRAL-KALPDSEMLRYAFAELEES-RGAIAAAKKLYESL---LTDSVNTTALAHIQFIRFLRRT----EGVEAARKY 377 (774)
Q Consensus 307 ~v~erAl-~~~P~~~~l~~~~a~l~e~-~g~~e~A~~iyek~---l~~~~~~~~~~~~~~a~~~~r~----~~~~~Ar~i 377 (774)
.+-.... ..+-++...|+.+...+.. ..+++ -.|+.+ ++..+. +..|+.+.....+. .-.+.....
T Consensus 376 ~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q---~~f~~l~n~~r~~~~--s~~~~~w~s~~~~dsl~~~~~~~Ii~a 450 (568)
T KOG2396|consen 376 EVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQ---MLFEELFNHLRKQVC--SELLISWASASEGDSLQEDTLDLIISA 450 (568)
T ss_pred HHHHHhhHHHhcchHHHHHHHHHHHHhhcchhH---HHHHHHHHHHHHHhc--chhHHHHHHHhhccchhHHHHHHHHHH
Confidence 7666666 4667888899888777663 33333 223222 222221 23344433322111 111222222
Q ss_pred HHHHhcCCCC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhcC
Q 004093 378 FLDARKSPNF-TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLN--DDRNIRALFERALSSL 454 (774)
Q Consensus 378 f~~al~~~~~-~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~g--d~~~Ar~lfEraL~~~ 454 (774)
+..+...... ....|+.|+. . .+..+.||++|.+.....|-+.+++...++|+..+- +..++|.+|++|+..+
T Consensus 451 ~~s~~~~~~~tl~s~~l~~~~---e-~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f 526 (568)
T KOG2396|consen 451 LLSVIGADSVTLKSKYLDWAY---E-SGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREF 526 (568)
T ss_pred HHHhcCCceeehhHHHHHHHH---H-hcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh
Confidence 3333322211 2455666543 3 488999999999999999999999999999998653 4899999999999988
Q ss_pred CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 455 PPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 455 p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
. ....+|..|+.+|..+|..+.+..+..|+.+.+.
T Consensus 527 g--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~ 561 (568)
T KOG2396|consen 527 G--ADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQ 561 (568)
T ss_pred C--CChHHHHHHHHhhccCCCcccccHHHHHHHHhhC
Confidence 8 5689999999999999999999999999999986
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=6e-15 Score=178.25 Aligned_cols=413 Identities=12% Similarity=0.013 Sum_probs=291.0
Q ss_pred CCCCCHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHH
Q 004093 18 ADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLW 96 (774)
Q Consensus 18 ~nP~d~~~W~~l~~~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p-~~~lW 96 (774)
.+|.-+.-|..++.. .++.++|..+|+++....|.. ...|..++.+....+++++|..+|++++...| +..+|
T Consensus 13 ~~~~~~~d~~~ia~~--~g~~~~A~~~~~~~~~~~~~~----a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~ 86 (765)
T PRK10049 13 LSNNQIADWLQIALW--AGQDAEVITVYNRYRVHMQLP----ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQ 86 (765)
T ss_pred CCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 577778888887654 357899999999999989999 89999999999999999999999999999865 57888
Q ss_pred HHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccC
Q 004093 97 RCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPT 176 (774)
Q Consensus 97 ~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~ 176 (774)
...+......++ .+.+...++.++.. +|.... |..+...+.. .++.+.|..+|++++....
T Consensus 87 ~~la~~l~~~g~------~~eA~~~l~~~l~~---~P~~~~-~~~la~~l~~---------~g~~~~Al~~l~~al~~~P 147 (765)
T PRK10049 87 RGLILTLADAGQ------YDEALVKAKQLVSG---APDKAN-LLALAYVYKR---------AGRHWDELRAMTQALPRAP 147 (765)
T ss_pred HHHHHHHHHCCC------HHHHHHHHHHHHHh---CCCCHH-HHHHHHHHHH---------CCCHHHHHHHHHHHHHhCC
Confidence 887777665544 67888888866654 566677 8877776543 5788999999999998644
Q ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHH--HHHHHHHHH
Q 004093 177 HHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQW--IAWKRLLTF 254 (774)
Q Consensus 177 ~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~--~lW~~yi~~ 254 (774)
.+.+ ++..+...... ....+.|...++. . ... |.. .... .....-+..
T Consensus 148 ~~~~-~~~~la~~l~~-------------~~~~e~Al~~l~~------~-----~~~-p~~----~~~l~~~~~~~~~r~ 197 (765)
T PRK10049 148 QTQQ-YPTEYVQALRN-------------NRLSAPALGAIDD------A-----NLT-PAE----KRDLEADAAAELVRL 197 (765)
T ss_pred CCHH-HHHHHHHHHHH-------------CCChHHHHHHHHh------C-----CCC-HHH----HHHHHHHHHHHHHHh
Confidence 4332 22222222111 1222333333321 0 000 100 0000 000000001
Q ss_pred HhcCCCCCC--chhchHHHHHHHHHHHHhcCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHH
Q 004093 255 EKGNPQRID--TASSNKRIIFTYEQCLMYLYHYPDI-------WYDYATWNAKSGSIDAAIKVFQRALKAL---PDSEML 322 (774)
Q Consensus 255 Ek~n~~~~d--~~~~~~r~~~~yeraL~~~p~~~~i-------W~~ya~~l~~~g~~e~A~~v~erAl~~~---P~~~~l 322 (774)
... ....+ .....++++..|++++...|.+++. ++..+-.+...+++++|+..|+++++.. |.....
T Consensus 198 ~~~-~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~ 276 (765)
T PRK10049 198 SFM-PTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQR 276 (765)
T ss_pred hcc-cccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHH
Confidence 110 00000 0011256778889998765544433 2222233457789999999999999875 444444
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC------------
Q 004093 323 RYAFAELEESRGAIAAAKKLYESLLTDSVNT---TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF------------ 387 (774)
Q Consensus 323 ~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~---~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~------------ 387 (774)
| ++.++...|++++|..+|++++...+.. ....+..++..+.+.+++++|..+++++....+.
T Consensus 277 ~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p 354 (765)
T PRK10049 277 W--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIP 354 (765)
T ss_pred H--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCC
Confidence 4 5888999999999999999999877642 1245566666678899999999999999875321
Q ss_pred ---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHH
Q 004093 388 ---TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWK 464 (774)
Q Consensus 388 ---~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~ 464 (774)
...++...+.+... .|+.+.|+++|++++...|+++.++...+..+...|++++|..++++++...| +...++.
T Consensus 355 ~~~~~~a~~~~a~~l~~-~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P--d~~~l~~ 431 (765)
T PRK10049 355 NDDWLQGQSLLSQVAKY-SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP--RNINLEV 431 (765)
T ss_pred CchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CChHHHH
Confidence 12345555555445 49999999999999999999999999999999999999999999999999988 3445666
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 465 RFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 465 ~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
.........|+++.++++.+++++..|
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 666666689999999999999999999
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=1.6e-15 Score=179.73 Aligned_cols=336 Identities=14% Similarity=0.011 Sum_probs=257.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHh
Q 004093 60 AKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ-VPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPI 138 (774)
Q Consensus 60 ~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~-~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~i 138 (774)
..-....+...+..|+++.|..+++..+...|+ .+.+...+--....+ ..+.+...|++++. .+|.+...
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g------~~~~A~~~l~~~l~---~~P~~~~a 112 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASS------QPDAVLQVVNKLLA---VNVCQPED 112 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcC------CHHHHHHHHHHHHH---hCCCChHH
Confidence 344566777778899999999999999998865 577777775554433 36789999996665 56778889
Q ss_pred HHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004093 139 WLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRE 218 (774)
Q Consensus 139 W~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~ 218 (774)
|......... .++.+.|...|++++.+...+. ..|......... .+++..|...++.
T Consensus 113 ~~~la~~l~~---------~g~~~~Ai~~l~~Al~l~P~~~-~a~~~la~~l~~-------------~g~~~eA~~~~~~ 169 (656)
T PRK15174 113 VLLVASVLLK---------SKQYATVADLAEQAWLAFSGNS-QIFALHLRTLVL-------------MDKELQAISLART 169 (656)
T ss_pred HHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHH-------------CCChHHHHHHHHH
Confidence 9888877543 5889999999999998633332 223222222111 3566677666553
Q ss_pred HHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Q 004093 219 RKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYH-YPDIWYDYATWNA 297 (774)
Q Consensus 219 ~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~-~~~iW~~ya~~l~ 297 (774)
. +. ..|... ..|.....+... +..+.+..+|++++...|. ....+...+..+.
T Consensus 170 ~------~~-----~~P~~~-------~a~~~~~~l~~~--------g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~ 223 (656)
T PRK15174 170 Q------AQ-----EVPPRG-------DMIATCLSFLNK--------SRLPEDHDLARALLPFFALERQESAGLAVDTLC 223 (656)
T ss_pred H------HH-----hCCCCH-------HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 1 11 123211 122222222221 3446678889999988764 3444455677888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH----HHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHH
Q 004093 298 KSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAA----AKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEA 373 (774)
Q Consensus 298 ~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~----A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~ 373 (774)
..|++++|...|++++...|++...++.++.++...|++++ |...|++++...|+ ...++..++..+...|++++
T Consensus 224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999985 89999999999997 67899999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 004093 374 ARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSS 453 (774)
Q Consensus 374 Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~ 453 (774)
|...|++++...+....++..++.+.... |+++.|+..|++++...|+++.+....+..+...|+.++|+..|+++++.
T Consensus 303 A~~~l~~al~l~P~~~~a~~~La~~l~~~-G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 303 AIPLLQQSLATHPDLPYVRAMYARALRQV-GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999998777788888888776664 99999999999999999998876666788889999999999999999998
Q ss_pred CC
Q 004093 454 LP 455 (774)
Q Consensus 454 ~p 455 (774)
.|
T Consensus 382 ~P 383 (656)
T PRK15174 382 RA 383 (656)
T ss_pred Ch
Confidence 77
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=8e-15 Score=177.21 Aligned_cols=387 Identities=11% Similarity=0.025 Sum_probs=281.8
Q ss_pred CCCCCHHHHHHHHHHhcc-CChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHH
Q 004093 18 ADKYNVETAEILANSALH-LPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ-VPL 95 (774)
Q Consensus 18 ~nP~d~~~W~~l~~~~~~-~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~-~~l 95 (774)
.+|.+..+|..++..+.. +++.+|..+|+++++..|.+ ..+|..++.+....|++++|..++++++...|+ ..
T Consensus 44 ~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~- 118 (765)
T PRK10049 44 HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN----DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN- 118 (765)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-
Confidence 488889899999886654 68999999999999999999 999999999999999999999999999998764 57
Q ss_pred HHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHccc
Q 004093 96 WRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTP 175 (774)
Q Consensus 96 W~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P 175 (774)
|..++......++ .+.+..+|++++. .+|....+|..++..+.. .+..+.|.+.+++++..|
T Consensus 119 ~~~la~~l~~~g~------~~~Al~~l~~al~---~~P~~~~~~~~la~~l~~---------~~~~e~Al~~l~~~~~~p 180 (765)
T PRK10049 119 LLALAYVYKRAGR------HWDELRAMTQALP---RAPQTQQYPTEYVQALRN---------NRLSAPALGAIDDANLTP 180 (765)
T ss_pred HHHHHHHHHHCCC------HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHH---------CCChHHHHHHHHhCCCCH
Confidence 8887777665443 6889999997776 467778888888887653 356677888888888765
Q ss_pred CccHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHH
Q 004093 176 THHVEQLWK-DYENFENSVSRQLAKGLLSEYQSKY---TSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRL 251 (774)
Q Consensus 176 ~~~~e~l~~-~y~~fE~~~~~~lak~~l~e~~~~y---~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~y 251 (774)
......-+. .+...... +..... ....| +.|...++ ..+.. .... |.... .....+...
T Consensus 181 ~~~~~l~~~~~~~~~r~~----~~~~~~--~~~r~~~ad~Al~~~~------~ll~~-~~~~-p~~~~---~~~~a~~d~ 243 (765)
T PRK10049 181 AEKRDLEADAAAELVRLS----FMPTRS--EKERYAIADRALAQYD------ALEAL-WHDN-PDATA---DYQRARIDR 243 (765)
T ss_pred HHHHHHHHHHHHHHHHhh----cccccC--hhHHHHHHHHHHHHHH------HHHhh-cccC-Cccch---HHHHHHHHH
Confidence 421000000 00000000 000000 01123 23333322 22211 0011 11100 001111111
Q ss_pred H--HHHhcCCCCCCchhchHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHH
Q 004093 252 L--TFEKGNPQRIDTASSNKRIIFTYEQCLMYL---YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS----EML 322 (774)
Q Consensus 252 i--~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~---p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~----~~l 322 (774)
+ .++. +..+.++..|++++... |.+...|. +..+...|++++|+.+|++++...|.+ ...
T Consensus 244 l~~Ll~~---------g~~~eA~~~~~~ll~~~~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~ 312 (765)
T PRK10049 244 LGALLAR---------DRYKDVISEYQRLKAEGQIIPPWAQRWV--ASAYLKLHQPEKAQSILTELFYHPETIADLSDEE 312 (765)
T ss_pred HHHHHHh---------hhHHHHHHHHHHhhccCCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHH
Confidence 1 1222 23466788999999875 55566664 888999999999999999999887765 345
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCC--------------CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 004093 323 RYAFAELEESRGAIAAAKKLYESLLTDSVN--------------TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT 388 (774)
Q Consensus 323 ~~~~a~l~e~~g~~e~A~~iyek~l~~~~~--------------~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~ 388 (774)
+..++..+...|++++|..+++++....|. ....++..++..+...|+.++|+++|++++...+..
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n 392 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN 392 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 556666678889999999999999987652 113466778889999999999999999999977777
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCc
Q 004093 389 YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPP 456 (774)
Q Consensus 389 ~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~ 456 (774)
..+++..|.+.... |+++.|.+.+++++..+|++..++...+......|++++|..++++++...|.
T Consensus 393 ~~l~~~lA~l~~~~-g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 393 QGLRIDYASVLQAR-GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 99999999987665 99999999999999999999999999999999999999999999999999884
No 27
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=6.2e-14 Score=150.09 Aligned_cols=415 Identities=15% Similarity=0.151 Sum_probs=272.5
Q ss_pred ccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCH-HHHHHHHHHHHHHhhccCC
Q 004093 34 LHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQV-PLWRCYIRFIRKVYEKKGT 112 (774)
Q Consensus 34 ~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~~-~lW~~Yl~~~~~~~~~~~~ 112 (774)
+++.+++|+..|..|++..|+. +-++-..+..+...|+++++.+-..++|+..|+. .....-+.-.+..++.
T Consensus 127 ~~kkY~eAIkyY~~AI~l~p~e----piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~--- 199 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIELCPDE----PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKF--- 199 (606)
T ss_pred hcccHHHHHHHHHHHHhcCCCC----chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccH---
Confidence 3457999999999999999998 7889999999999999999999999999998873 3333333333222221
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHH-HHH-cccCcc-HHHHHHHHHHH
Q 004093 113 EGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQ-RAV-VTPTHH-VEQLWKDYENF 189 (774)
Q Consensus 113 ~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYq-ral-~~P~~~-~e~l~~~y~~f 189 (774)
..-+++-..-.+--+++..++-...-+.++. +-+..+.+-|. +.. .+|... +..+ +..|
T Consensus 200 -----~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk----------~a~~ka~e~~k~nr~p~lPS~~fi~sy---f~sF 261 (606)
T KOG0547|consen 200 -----DEALFDVTVLCILEGFQNASIEPMAERVLKK----------QAMKKAKEKLKENRPPVLPSATFIASY---FGSF 261 (606)
T ss_pred -----HHHHHhhhHHHHhhhcccchhHHHHHHHHHH----------HHHHHHHHhhcccCCCCCCcHHHHHHH---Hhhc
Confidence 1112221111111123333333333333321 22333333333 111 233221 1222 1222
Q ss_pred HHHh-----hH------HHHHHH---HHHHHHHHHHHHHHHHH-HHHHHHHhhhccCCCCCCCCchhH-HHHHHHHHHHH
Q 004093 190 ENSV-----SR------QLAKGL---LSEYQSKYTSARAVYRE-RKKYCEEIDWNMLAVPPTGSYKEE-QQWIAWKRLLT 253 (774)
Q Consensus 190 E~~~-----~~------~lak~~---l~e~~~~y~~Ar~i~k~-~~~~~~~L~~~~~~~pP~~~~~~~-~q~~lW~~yi~ 253 (774)
--.+ +. .+.+.+ ..-....|..|.....+ ...++..+..+- + +...+. ...-+.+.-..
T Consensus 262 ~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~--~---d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 262 HADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNE--I---DAELEYMAEALLLRGTFH 336 (606)
T ss_pred cccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccc--c---chhHHHHHHHHHHhhhhh
Confidence 1111 00 011100 00011234444322221 111111111000 0 000000 00001111112
Q ss_pred HHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 004093 254 FEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESR 333 (774)
Q Consensus 254 ~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~ 333 (774)
|.++++. .+...|+.++...|.+..+++..+..+...++.++..+.|..|...+|.+..+++..+.+...+
T Consensus 337 fL~g~~~---------~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 337 FLKGDSL---------GAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL 407 (606)
T ss_pred hhcCCch---------hhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH
Confidence 4444432 2356799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 004093 334 GAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVF 413 (774)
Q Consensus 334 g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~if 413 (774)
+++++|..-|++++...|. +...+++++-.+.|++.++++.+.|+.+++.-+...++|.-+|.+.... ++++.|.+.|
T Consensus 408 ~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDq-qqFd~A~k~Y 485 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQ-QQFDKAVKQY 485 (606)
T ss_pred HHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhH-HhHHHHHHHH
Confidence 9999999999999999997 6788999999999999999999999999986444499999999987765 8999999999
Q ss_pred HHHHHHcCC------CHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 414 EAGLKRFMH------EPAY-ILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRR 486 (774)
Q Consensus 414 e~al~~~p~------~~~l-~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~ 486 (774)
+.++..-|. ++.. +..-.-.+...++++.|..++++|++..| +...-+..+.+||...|+++.+..++++.
T Consensus 486 D~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp--kce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 486 DKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDP--KCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCc--hHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999998877 4433 32222333345899999999999999988 67788899999999999998877777777
Q ss_pred HHHcc
Q 004093 487 KEALS 491 (774)
Q Consensus 487 ~~~~p 491 (774)
...-.
T Consensus 564 a~lAr 568 (606)
T KOG0547|consen 564 AQLAR 568 (606)
T ss_pred HHHHH
Confidence 65553
No 28
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.70 E-value=1.5e-12 Score=159.63 Aligned_cols=408 Identities=11% Similarity=0.044 Sum_probs=284.6
Q ss_pred CCCCCHHHHHHHHH-HhccCChhhHHHHHHHHHHhC--CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHH
Q 004093 18 ADKYNVETAEILAN-SALHLPVAQAAPIYEQLLSVF--PTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVP 94 (774)
Q Consensus 18 ~nP~d~~~W~~l~~-~~~~~~i~~Ar~~yeral~~~--P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~~~ 94 (774)
..+.|...+..++. .++.+.+.+|+.+|+.+.... +.+ .-++..++..+.+.+.++.|..+|+.+.. |+..
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~----~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~ 438 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMD----KIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLS 438 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCch----HHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHH
Confidence 44556666665555 556789999999999998754 334 45556677888889999999999987765 8888
Q ss_pred HHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcc
Q 004093 95 LWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT 174 (774)
Q Consensus 95 lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~ 174 (774)
.|...+..+.+.++ .+.+.++|+.+.+. |+.| +..+|...+.... +.++++.|.++|+++...
T Consensus 439 Tyn~LL~a~~k~g~------~e~A~~lf~~M~~~-Gl~p-D~~tynsLI~~y~---------k~G~vd~A~~vf~eM~~~ 501 (1060)
T PLN03218 439 TFNMLMSVCASSQD------IDGALRVLRLVQEA-GLKA-DCKLYTTLISTCA---------KSGKVDAMFEVFHEMVNA 501 (1060)
T ss_pred HHHHHHHHHHhCcC------HHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHH---------hCcCHHHHHHHHHHHHHc
Confidence 99888888766544 78899999977653 5543 5567888877654 358899999999999853
Q ss_pred cCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHH
Q 004093 175 PTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTF 254 (774)
Q Consensus 175 P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~ 254 (774)
........|......- . ..++++.|..++.++... .+.|+ ...|...|..
T Consensus 502 Gv~PdvvTynaLI~gy-------~------k~G~~eeAl~lf~~M~~~---------Gv~PD--------~vTYnsLI~a 551 (1060)
T PLN03218 502 GVEANVHTFGALIDGC-------A------RAGQVAKAFGAYGIMRSK---------NVKPD--------RVVFNALISA 551 (1060)
T ss_pred CCCCCHHHHHHHHHHH-------H------HCcCHHHHHHHHHHHHHc---------CCCCC--------HHHHHHHHHH
Confidence 2111112222211110 0 034566666666543211 13343 2356666653
Q ss_pred HhcCCCCCCchhchHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Q 004093 255 EKGNPQRIDTASSNKRIIFTYEQCLMY----LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKAL-PDSEMLRYAFAEL 329 (774)
Q Consensus 255 Ek~n~~~~d~~~~~~r~~~~yeraL~~----~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~-P~~~~l~~~~a~l 329 (774)
.... +..+++..+|+++... .| +...|..++..+.+.|++++|.++|++..+.. +.+...|..+...
T Consensus 552 ~~k~-------G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~a 623 (1060)
T PLN03218 552 CGQS-------GAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623 (1060)
T ss_pred HHHC-------CCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 3322 3456677888888753 23 34677778888888999999999999888764 4567778888888
Q ss_pred HHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCCHHH
Q 004093 330 EESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP-NFTYHVYVAYALMAFCQDKDPKL 408 (774)
Q Consensus 330 ~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~-~~~~~~~i~~A~lE~~~~gd~~~ 408 (774)
+.+.|++++|..+|+++...........|..++..+.+.|++++|.++|+++.+.. .....+|..+......+ |+++.
T Consensus 624 y~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~-G~~ee 702 (1060)
T PLN03218 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA-KNWKK 702 (1060)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCHHH
Confidence 88889999999999888876433235678888888888899999999999888753 23456666666654454 88999
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 409 AHNVFEAGLKR-FMHEPAYILEYADFLSRLNDDRNIRALFERALSS-LPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRR 486 (774)
Q Consensus 409 A~~ife~al~~-~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~-~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~ 486 (774)
|.++|+...+. ..-+...|...+..+.+.|+.++|..+|++.... +.+ ....|..++..-.+.|+++.+.+++.++
T Consensus 703 A~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P--d~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP--NTITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999887664 2234566888888888899999999999987753 221 2455666666667788888888888888
Q ss_pred HHH
Q 004093 487 KEA 489 (774)
Q Consensus 487 ~~~ 489 (774)
.+.
T Consensus 781 ~k~ 783 (1060)
T PLN03218 781 KED 783 (1060)
T ss_pred HHc
Confidence 764
No 29
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.70 E-value=9.4e-14 Score=153.55 Aligned_cols=401 Identities=16% Similarity=0.226 Sum_probs=267.2
Q ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHHHH----------Hc---CCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHhh
Q 004093 43 PIYEQLLSVFPTAVSFIAKFWKQYVEAYM----------AV---NNDDATKQLFSRCLLICLQ-VPLWRCYIRFIRKVYE 108 (774)
Q Consensus 43 ~~yeral~~~P~~~~~~~~~W~~y~~~e~----------~~---~n~~~a~~ifeRaL~~~p~-~~lW~~Yl~~~~~~~~ 108 (774)
.-....+..+|++ .++|.....--+ .. ...+.++.+|...|..+|. ...|+.|+.++.+.++
T Consensus 19 ~~~n~~~~~~p~~----~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~ 94 (577)
T KOG1258|consen 19 STDNTSLTKYPDS----LDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGN 94 (577)
T ss_pred CccchhhhhCcch----hhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhh
Confidence 3445677778888 888865443221 11 2346788889988877776 4899999999998776
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcc-cCc-cHHHHHHHH
Q 004093 109 KKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTH-HVEQLWKDY 186 (774)
Q Consensus 109 ~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~-P~~-~~e~l~~~y 186 (774)
.+.+.++|++++..+. .|..+|..|+.|.... ++.-+.+|..|++|+.. -.+ .-..+|..|
T Consensus 95 ------~~~s~~Vfergv~aip---~SvdlW~~Y~~f~~n~--------~~d~~~lr~~fe~A~~~vG~dF~S~~lWdky 157 (577)
T KOG1258|consen 95 ------AENSVKVFERGVQAIP---LSVDLWLSYLAFLKNN--------NGDPETLRDLFERAKSYVGLDFLSDPLWDKY 157 (577)
T ss_pred ------HHHHHHHHHHHHHhhh---hHHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhcccchhccHHHHHH
Confidence 7899999999999874 5889999999999864 45556699999999974 222 236899999
Q ss_pred HHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHH----HH-----------
Q 004093 187 ENFENSVSR-----QLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQ----WI----------- 246 (774)
Q Consensus 187 ~~fE~~~~~-----~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q----~~----------- 246 (774)
..||+.-.. .+..++++--...|. ..+.+ |.+.++.+-.++ ..+.+...+ +.
T Consensus 158 ie~en~qks~k~v~~iyeRileiP~~~~~---~~f~~---f~~~l~~~~~~~--l~~~d~~~~l~~~~~~~~~~~~~~~~ 229 (577)
T KOG1258|consen 158 IEFENGQKSWKRVANIYERILEIPLHQLN---RHFDR---FKQLLNQNEEKI--LLSIDELIQLRSDVAERSKITHSQEP 229 (577)
T ss_pred HHHHhccccHHHHHHHHHHHHhhhhhHhH---HHHHH---HHHHHhcCChhh--hcCHHHHHHHhhhHHhhhhcccccCh
Confidence 999965211 112222211000000 11111 222222110000 000000000 00
Q ss_pred --HHHHHHHHHhcCCCC-CCc-hhchHHHHHH-----------------HHHHHHh-----cC---CCHHHHHHHHHHHH
Q 004093 247 --AWKRLLTFEKGNPQR-IDT-ASSNKRIIFT-----------------YEQCLMY-----LY---HYPDIWYDYATWNA 297 (774)
Q Consensus 247 --lW~~yi~~Ek~n~~~-~d~-~~~~~r~~~~-----------------yeraL~~-----~p---~~~~iW~~ya~~l~ 297 (774)
-|..++..-. .+.. ++. ....+++... ||..+.. .| ..-..|..|+.|..
T Consensus 230 ~e~~~~~v~~~~-~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i 308 (577)
T KOG1258|consen 230 LEELEIGVKDST-DPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEI 308 (577)
T ss_pred hHHHHHHHhhcc-CccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhh
Confidence 0111111111 1111 110 0011111111 1111111 01 13478999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHH
Q 004093 298 KSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKY 377 (774)
Q Consensus 298 ~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~i 377 (774)
+.|+.+.+.-.|+|++-.|-.-..+|+.|+.+.+..|+.+-|..++.++.+......+.+.+.++.|+...|+++.|+.+
T Consensus 309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~ 388 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVI 388 (577)
T ss_pred hcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887666778999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHH---HHHHHHHHcCC---CHHHHHHHHHHHHhc-CChhHHHHHHHHH
Q 004093 378 FLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHN---VFEAGLKRFMH---EPAYILEYADFLSRL-NDDRNIRALFERA 450 (774)
Q Consensus 378 f~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~---ife~al~~~p~---~~~l~~~ya~~l~~~-gd~~~Ar~lfEra 450 (774)
+++....-+....+-+..+.+|++. |+.+.+.. ++.....-..+ -..+...|+.+.... ++.+.|+.++..+
T Consensus 389 lq~i~~e~pg~v~~~l~~~~~e~r~-~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~ 467 (577)
T KOG1258|consen 389 LQRIESEYPGLVEVVLRKINWERRK-GNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEA 467 (577)
T ss_pred HHHHHhhCCchhhhHHHHHhHHHHh-cchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 9999987666677778888899886 88877763 22222221111 134556777776654 6889999999999
Q ss_pred HhcCCchhHHHHHHHHHHHHHHhCCH
Q 004093 451 LSSLPPEESIEVWKRFTQFEQMYGDL 476 (774)
Q Consensus 451 L~~~p~e~~~~lw~~~~~fE~~~Gd~ 476 (774)
+...| ....+|..++.|+...+..
T Consensus 468 ~~~~~--~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 468 NDILP--DCKVLYLELIRFELIQPSG 491 (577)
T ss_pred hhcCC--ccHHHHHHHHHHHHhCCcc
Confidence 99998 5679999999999887643
No 30
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.70 E-value=2.4e-13 Score=146.40 Aligned_cols=396 Identities=15% Similarity=0.164 Sum_probs=245.6
Q ss_pred CCCCCHHHHHHHHHHhccCC-hhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCCC-HH
Q 004093 18 ADKYNVETAEILANSALHLP-VAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVN-NDDATKQLFSRCLLICLQ-VP 94 (774)
Q Consensus 18 ~nP~d~~~W~~l~~~~~~~~-i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~-n~~~a~~ifeRaL~~~p~-~~ 94 (774)
+-+.|+..|..++..++... ..+..++|.+++..+|++ +++|+.-+.++..-| |++.|+++|.|+|..+|+ +.
T Consensus 100 rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~----~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~ 175 (568)
T KOG2396|consen 100 RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNN----PDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPK 175 (568)
T ss_pred hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC----chhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChH
Confidence 78889999999999998765 999999999999999999 999999999987654 699999999999999875 69
Q ss_pred HHHHHHHHHHHHhhc-----------cCC--ccH--------------------------------HHHHHHHHHHHHhc
Q 004093 95 LWRCYIRFIRKVYEK-----------KGT--EGQ--------------------------------EETRKAFDFMLSHV 129 (774)
Q Consensus 95 lW~~Yl~~~~~~~~~-----------~~~--~~~--------------------------------e~ar~~ye~aL~~v 129 (774)
||.+|.+++...-.. .+. +.+ +.+.++=...++.+
T Consensus 176 Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~ 255 (568)
T KOG2396|consen 176 LWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDL 255 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999988653211 000 000 01111111112222
Q ss_pred -CCCCCChHhHHHHHHHHhhCCcCc----------hHHHhHHHHHHHHHHHHHHcc-cCccHHHHHHHHHHHHHHhhHHH
Q 004093 130 -GSDISSGPIWLEYITFLKSLPALN----------AQEESQRMIAIRKAYQRAVVT-PTHHVEQLWKDYENFENSVSRQL 197 (774)
Q Consensus 130 -g~d~~s~~iW~~yi~fe~~~~~~~----------~~~~~~~~~~ar~vYqral~~-P~~~~e~l~~~y~~fE~~~~~~l 197 (774)
+.+|....+|.+..+-+......+ .+.-.-+-.....||+.+++. |. +.+|+.|..|.......+
T Consensus 256 ~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t---~sm~e~YI~~~lE~~~~~ 332 (568)
T KOG2396|consen 256 QSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPT---ESMWECYITFCLERFTFL 332 (568)
T ss_pred hccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHhh
Confidence 335566677776655333221100 011112234566888888853 33 467888887765533222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHH
Q 004093 198 AKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQ 277 (774)
Q Consensus 198 ak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yer 277 (774)
.-.++ ......|....... .+.+.. .++ .-..++..+..+- .-..+-.-
T Consensus 333 r~~~I-------------~h~~~~~~~~~~~~--~l~~~~----~~~--ys~~~l~~~t~~~----------~r~~a~~l 381 (568)
T KOG2396|consen 333 RGKRI-------------LHTMCVFRKAHELK--LLSECL----YKQ--YSVLLLCLNTLNE----------AREVAVKL 381 (568)
T ss_pred hhhHH-------------HHHHHHHHHHHHhc--ccccch----HHH--HHHHHHHHhccch----------HhHHHHHh
Confidence 11111 11111111111100 011110 000 1111222222220 11112222
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCC-HH--HHHHHHHHHhcCCC
Q 004093 278 CLMYLYHYPDIWYDYATWNAKS-GSIDAAIKVFQRALKALPDS--EMLRYAFAELEESRGA-IA--AAKKLYESLLTDSV 351 (774)
Q Consensus 278 aL~~~p~~~~iW~~ya~~l~~~-g~~e~A~~v~erAl~~~P~~--~~l~~~~a~l~e~~g~-~e--~A~~iyek~l~~~~ 351 (774)
+...+.++...|+.+.+.+.+. .+++--...+-..++..+.+ ..+|.... +++ .. .--.++..+.....
T Consensus 382 ~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~ 456 (568)
T KOG2396|consen 382 TTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVIG 456 (568)
T ss_pred hHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcC
Confidence 3345678999999999888744 33332222222344444433 23343322 222 11 11234444444333
Q ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCHHHHHHH
Q 004093 352 NTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ-DKDPKLAHNVFEAGLKRFMHEPAYILEY 430 (774)
Q Consensus 352 ~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~-~gd~~~A~~ife~al~~~p~~~~l~~~y 430 (774)
.+...+-..|.+++.+.++.++||++|++....|+.+...|-...++|... .-+...+|+.|+.++..|+.++++|..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 223346678899999999999999999999999999888888888886542 1258899999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCc
Q 004093 431 ADFLSRLNDDRNIRALFERALSSLPP 456 (774)
Q Consensus 431 a~~l~~~gd~~~Ar~lfEraL~~~p~ 456 (774)
..++..+|..+++-.+|.||++.+.+
T Consensus 537 ~~~e~~~g~~en~~~~~~ra~ktl~~ 562 (568)
T KOG2396|consen 537 MKEELPLGRPENCGQIYWRAMKTLQG 562 (568)
T ss_pred HHhhccCCCcccccHHHHHHHHhhCh
Confidence 99999999999999999999987653
No 31
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.70 E-value=1.2e-15 Score=178.84 Aligned_cols=213 Identities=21% Similarity=0.323 Sum_probs=195.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 272 IFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKAL-PD----SEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 272 ~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~-P~----~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
..-|++.+...|++.-.|+.|..|+.+.+++++||++.+|||... +. -..+|.+|.+++...|.-+...++|++|
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 356999999999999999999999999999999999999999864 42 2568999999999999989999999999
Q ss_pred hcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--CH
Q 004093 347 LTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH--EP 424 (774)
Q Consensus 347 l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~--~~ 424 (774)
.+.+.. -.+|..+..++.+.+..+.|.++|++.++.......+|+.|+.+..+. .+-+.|+.++.+||+..|. ..
T Consensus 1524 cqycd~--~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~-ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1524 CQYCDA--YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ-NEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHhcch--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc-cHHHHHHHHHHHHHhhcchhhhH
Confidence 998753 579999999999999999999999999998777899999999988875 6778999999999999887 57
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004093 425 AYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEA 489 (774)
Q Consensus 425 ~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~ 489 (774)
+++..+|+++.++||.++.|.+||-.|...| +..++|.-|++.|.++|+.+.++++++|++.+
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayP--KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYP--KRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCc--cchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999 67899999999999999999999999999865
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.69 E-value=3.9e-13 Score=163.66 Aligned_cols=399 Identities=12% Similarity=-0.002 Sum_probs=254.1
Q ss_pred CCCCCHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC----CH
Q 004093 18 ADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL----QV 93 (774)
Q Consensus 18 ~nP~d~~~W~~l~~~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p----~~ 93 (774)
..|.+.-.-.++..........+++..++......|.. .+......-..+..|++.+|+.+|+++..... +.
T Consensus 338 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~----~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (987)
T PRK09782 338 TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPAN----LTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQ 413 (987)
T ss_pred CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCH
Confidence 55666543333333344457888888888888888988 88888888889999999999999999998532 23
Q ss_pred HHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcC-CCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHH
Q 004093 94 PLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVG-SDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAV 172 (774)
Q Consensus 94 ~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg-~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral 172 (774)
.+-...+....+.... ....++ +.... ++-..-.+|.. ++. ....+...+.+++
T Consensus 414 ~l~~~l~~~~~~~~~~---~~~~~~-------~~l~~~~~~~~~~~~~~--~~~-------------~~~~~~~~~~~al 468 (987)
T PRK09782 414 TLMARLASLLESHPYL---ATPAKV-------AILSKPLPLAEQRQWQS--QLP-------------GIADNCPAIVRLL 468 (987)
T ss_pred HHHHHHHHHHHhCCcc---cchHHH-------HHhccccccchhHHHHh--hhh-------------hhhhhHHHHHHhc
Confidence 4444455544432211 001111 11100 11111123321 110 1122333344444
Q ss_pred cc-cCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHH
Q 004093 173 VT-PTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRL 251 (774)
Q Consensus 173 ~~-P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~y 251 (774)
.. |.+.....|..+..... ...+..|...+.+ .+. ..|.. ...+...+
T Consensus 469 ~~~p~~~~~~a~~~LG~~l~--------------~~~~~eAi~a~~~------Al~-----~~Pd~------~~~L~lA~ 517 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCYR--------------DTLPGVALYAWLQ------AEQ-----RQPDA------WQHRAVAY 517 (987)
T ss_pred ccCCCCCCHHHHHHHHHHHH--------------hCCcHHHHHHHHH------HHH-----hCCch------HHHHHHHH
Confidence 32 33111223322222210 0122333333222 111 11221 00111111
Q ss_pred HHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004093 252 LTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEE 331 (774)
Q Consensus 252 i~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e 331 (774)
+.... +..+.+...|++++...|. ...|+.++..+.+.|+.++|...|+++++..|....++..++....
T Consensus 518 al~~~---------Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~ 587 (987)
T PRK09782 518 QAYQV---------EDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHC---------CCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 11112 2345667778887666444 4568888888888999999999999999988888777665555555
Q ss_pred HhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHH
Q 004093 332 SRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHN 411 (774)
Q Consensus 332 ~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ 411 (774)
..|++++|...|+++++..|+ ..+|..++..+.+.|++++|...|++++...+....++..++.+.... |+.+.|+.
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~-G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPS--ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS-GDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHH
Confidence 669999999999999988884 678888888899999999999999999988777788888888765554 88999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 412 VFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 412 ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
+|+++++..|+++.++...+..+..+|+++.|+..|++++...| +...+-..+..++..-.++..+.+.++|+...-+
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P--~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID--NQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999998999999999999999999999998877 4445555555555555556666666666665555
No 33
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.68 E-value=3.6e-12 Score=155.31 Aligned_cols=189 Identities=15% Similarity=0.062 Sum_probs=101.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHH
Q 004093 297 AKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK 376 (774)
Q Consensus 297 ~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~ 376 (774)
...|++++|+..|++++...|.. ..++.++.++...|++++|..+|++++...|. ...++..++....+.|++++|..
T Consensus 520 ~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 520 YQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHH
Confidence 33444444444444433332222 22334444444444555555555555544433 12222222222223366666666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCc
Q 004093 377 YFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPP 456 (774)
Q Consensus 377 if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~ 456 (774)
.|+++++..+. ...|...+.+.... |+.+.|...|++++...|+++.++..++.++...|++++|+.+|+++++..|
T Consensus 598 ~~~~AL~l~P~-~~a~~~LA~~l~~l-G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P- 674 (987)
T PRK09782 598 DLTRSLNIAPS-ANAYVARATIYRQR-HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP- 674 (987)
T ss_pred HHHHHHHhCCC-HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 66666654443 55666666554443 6666666666666666666666666666666666666666666666666665
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 457 EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 457 e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
....+|..........|+.+.++..++++++..|
T Consensus 675 -~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 675 -DDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 3345555555555566666666666666666665
No 34
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.65 E-value=4e-14 Score=139.42 Aligned_cols=202 Identities=17% Similarity=0.131 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 366 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~ 366 (774)
++.+.++.-+.+.|+...|++-+++||++.|++...|..+|.++...|+.+.|.+.|++++...|+ ...+...|+-|+.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 677888888999999999999999999999999999999999999999999999999999999997 6789999999999
Q ss_pred HhcCHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHH
Q 004093 367 RTEGVEAARKYFLDARKSPNF--TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIR 444 (774)
Q Consensus 367 r~~~~~~Ar~if~~al~~~~~--~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar 444 (774)
.+|.+++|.+.|.+|+..|.. ...+|.+....-... |+.+.|+.+|+++++..|+.+...+..++.+.+.|++..||
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~-gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKA-GQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc-CCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999999998754 467788877776664 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc
Q 004093 445 ALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 445 ~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk 492 (774)
.++++.....+ -....+|.. ++++...||.+.+.+...+..+.||.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~-iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLG-IRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHH-HHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 99999999877 355667755 67999999999999999999999993
No 35
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.64 E-value=1.4e-11 Score=151.05 Aligned_cols=372 Identities=12% Similarity=0.058 Sum_probs=268.8
Q ss_pred CCHHHHHHHHHHh-ccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCHHHHH
Q 004093 21 YNVETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLI--CLQVPLWR 97 (774)
Q Consensus 21 ~d~~~W~~l~~~~-~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~--~p~~~lW~ 97 (774)
.+.-.+..++..+ +.+.++.|..+|+.+.. |+ ...|...+..+.+.++++.|.++|+++... .|+...|.
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd-----~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tyn 476 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PT-----LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYT 476 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CC-----HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3444455555544 44578899998887765 54 578999999999999999999999999876 48889999
Q ss_pred HHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCc
Q 004093 98 CYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTH 177 (774)
Q Consensus 98 ~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~ 177 (774)
..+..+.+.++ .+.+.++|+.+.+. |..| +...|...|.... +.+++++|..+|.+.......
T Consensus 477 sLI~~y~k~G~------vd~A~~vf~eM~~~-Gv~P-dvvTynaLI~gy~---------k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 477 TLISTCAKSGK------VDAMFEVFHEMVNA-GVEA-NVHTFGALIDGCA---------RAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred HHHHHHHhCcC------HHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHH---------HCcCHHHHHHHHHHHHHcCCC
Confidence 99998877665 78999999987763 5544 4678888887644 358899999999998753211
Q ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 004093 178 HVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKG 257 (774)
Q Consensus 178 ~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~ 257 (774)
.....|.......- ..+.++.|..++.++..-. ..+.|. ...|...|...-.
T Consensus 540 PD~vTYnsLI~a~~-------------k~G~~deA~~lf~eM~~~~-------~gi~PD--------~vTynaLI~ay~k 591 (1060)
T PLN03218 540 PDRVVFNALISACG-------------QSGAVDRAFDVLAEMKAET-------HPIDPD--------HITVGALMKACAN 591 (1060)
T ss_pred CCHHHHHHHHHHHH-------------HCCCHHHHHHHHHHHHHhc-------CCCCCc--------HHHHHHHHHHHHH
Confidence 11122221111100 0345666766666532210 112233 1255555543222
Q ss_pred CCCCCCchhchHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCC
Q 004093 258 NPQRIDTASSNKRIIFTYEQCLMYL-YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGA 335 (774)
Q Consensus 258 n~~~~d~~~~~~r~~~~yeraL~~~-p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~-~P~~~~l~~~~a~l~e~~g~ 335 (774)
. +..+++..+|+++.... +.+...|..++..+.+.|++++|.++|++.... +..+...|..+...+...|+
T Consensus 592 ~-------G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 592 A-------GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred C-------CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 1 34567888999998865 557789999999999999999999999999875 22345677788888899999
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 004093 336 IAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP-NFTYHVYVAYALMAFCQDKDPKLAHNVFE 414 (774)
Q Consensus 336 ~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~-~~~~~~~i~~A~lE~~~~gd~~~A~~ife 414 (774)
+++|.++|+.+.+........+|..++..+.+.|++++|.++|+++.... ..+..+|..+...... .|+.++|.++|+
T Consensus 665 ~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k-~G~~eeAlelf~ 743 (1060)
T PLN03218 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE-GNQLPKALEVLS 743 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence 99999999999986544356789999999999999999999999887532 2246667666655444 599999999999
Q ss_pred HHHHH--cCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 004093 415 AGLKR--FMHEPAYILEYADFLSRLNDDRNIRALFERALSS 453 (774)
Q Consensus 415 ~al~~--~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~ 453 (774)
..... .|+ ...+...+..+.+.|+.+.|+.+|+++++.
T Consensus 744 eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 744 EMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 88764 344 445566778888999999999999999874
No 36
>PLN03077 Protein ECB2; Provisional
Probab=99.63 E-value=3.2e-12 Score=157.30 Aligned_cols=407 Identities=11% Similarity=0.088 Sum_probs=286.5
Q ss_pred CCHHHHHHHHH-HhccCChhhHHHHHHHHHHh--CCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCHHH
Q 004093 21 YNVETAEILAN-SALHLPVAQAAPIYEQLLSV--FPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLI--CLQVPL 95 (774)
Q Consensus 21 ~d~~~W~~l~~-~~~~~~i~~Ar~~yeral~~--~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~--~p~~~l 95 (774)
.|+..|..++. ..+.+..++|..+|+++... .|+. ..+...+..+.+.++.+.+++++..++.. .|+..+
T Consensus 251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~-----~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 251 RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL-----MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325 (857)
T ss_pred CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence 46778988888 56778899999999998764 5654 56777888888889999999999888875 478889
Q ss_pred HHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcc-
Q 004093 96 WRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT- 174 (774)
Q Consensus 96 W~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~- 174 (774)
|...+....++++ .+.++++|+... ..+...|...+.-.. +.++.++|.++|++....
T Consensus 326 ~n~Li~~y~k~g~------~~~A~~vf~~m~------~~d~~s~n~li~~~~---------~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 326 CNSLIQMYLSLGS------WGEAEKVFSRME------TKDAVSWTAMISGYE---------KNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHHHHHhcCC------HHHHHHHHhhCC------CCCeeeHHHHHHHHH---------hCCCHHHHHHHHHHHHHhC
Confidence 9888888877655 788999998432 224567888877643 357888999999987642
Q ss_pred --cCc-cHHHHHHHHHHH---HHHh---hH----------HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 004093 175 --PTH-HVEQLWKDYENF---ENSV---SR----------QLAKGLLSE--YQSKYTSARAVYRERKKYCEEIDWNMLAV 233 (774)
Q Consensus 175 --P~~-~~e~l~~~y~~f---E~~~---~~----------~lak~~l~e--~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~ 233 (774)
|.. .+..+...+... +... .. .+...++.- ..++++.|..++++ +
T Consensus 385 ~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~--------------m 450 (857)
T PLN03077 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN--------------I 450 (857)
T ss_pred CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh--------------C
Confidence 322 222333222211 1100 00 000111111 12344445544442 1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004093 234 PPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRAL 313 (774)
Q Consensus 234 pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl 313 (774)
+..+ ...|...|.--..+ +....+..+|++++....-+...+......+.+.|+.+.+.+++..++
T Consensus 451 ~~~d-------~vs~~~mi~~~~~~-------g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 451 PEKD-------VISWTSIIAGLRLN-------NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred CCCC-------eeeHHHHHHHHHHC-------CCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 1111 12576666533322 334667888999987655566777777888888999999999999998
Q ss_pred HhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC-CCCHHH
Q 004093 314 KAL-PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP-NFTYHV 391 (774)
Q Consensus 314 ~~~-P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~-~~~~~~ 391 (774)
+.. ..+..+...+.+.+.+.|++++|..+|+.. .+ ....|..++..+.+.|..++|.++|++..+.+ ..+..+
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~--d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EK--DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 864 344555667888999999999999999987 33 35789999999999999999999999988742 122444
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 004093 392 YVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE--PAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQF 469 (774)
Q Consensus 392 ~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~--~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~f 469 (774)
|...... +...|.+++|.++|+...+.++-. ...+...++.+.+.|+.++|..++++.- ..| ...+|..++..
T Consensus 592 ~~~ll~a-~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~p---d~~~~~aLl~a 666 (857)
T PLN03077 592 FISLLCA-CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-ITP---DPAVWGALLNA 666 (857)
T ss_pred HHHHHHH-HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCC---CHHHHHHHHHH
Confidence 5443333 223599999999999998665433 4567899999999999999999998852 222 46889999998
Q ss_pred HHHhCCHHHHHHHHHHHHHHcc
Q 004093 470 EQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 470 E~~~Gd~~~i~kv~~R~~~~~p 491 (774)
-..+|+.+..+.+.++..+..|
T Consensus 667 c~~~~~~e~~e~~a~~l~~l~p 688 (857)
T PLN03077 667 CRIHRHVELGELAAQHIFELDP 688 (857)
T ss_pred HHHcCChHHHHHHHHHHHhhCC
Confidence 8889999999999999999887
No 37
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.62 E-value=1.4e-12 Score=145.37 Aligned_cols=132 Identities=18% Similarity=0.235 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Q 004093 288 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR 367 (774)
Q Consensus 288 iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r 367 (774)
+|..++..+.+.|++++|.+.|+++++..|.+...++.++.++...|++++|.++|++++...+.....++..++..+..
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 34556666777778888888888888777777777777777777777777777777777766553222334444444444
Q ss_pred hcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 004093 368 TEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALF 447 (774)
Q Consensus 368 ~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lf 447 (774)
. |+.+.|...+++++...|+...+ ...+..+...|++++|..+|
T Consensus 262 ~-----------------------------------g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l 305 (389)
T PRK11788 262 L-----------------------------------GDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALL 305 (389)
T ss_pred c-----------------------------------CCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHH
Confidence 4 44555555555555444443222 44455555555555555555
Q ss_pred HHHHhcCC
Q 004093 448 ERALSSLP 455 (774)
Q Consensus 448 EraL~~~p 455 (774)
++++...|
T Consensus 306 ~~~l~~~P 313 (389)
T PRK11788 306 REQLRRHP 313 (389)
T ss_pred HHHHHhCc
Confidence 55555544
No 38
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.62 E-value=1.4e-12 Score=156.65 Aligned_cols=394 Identities=12% Similarity=0.071 Sum_probs=192.9
Q ss_pred CCCHHHHHHHHHHh-ccCChhhHHHHHHHHHHh--CCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHH
Q 004093 20 KYNVETAEILANSA-LHLPVAQAAPIYEQLLSV--FPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLW 96 (774)
Q Consensus 20 P~d~~~W~~l~~~~-~~~~i~~Ar~~yeral~~--~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~~~lW 96 (774)
+-|..++..++..+ +.+.++.++.++..+... .| + ...|..++.++.+.|+++.|+++|+++.. ++...|
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~----~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~ 192 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-D----QYMMNRVLLMHVKCGMLIDARRLFDEMPE--RNLASW 192 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-c----hHHHHHHHHHHhcCCCHHHHHHHHhcCCC--CCeeeH
Confidence 34677888887744 456788899999888763 44 4 57888899999999999999999998753 778888
Q ss_pred HHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcc--
Q 004093 97 RCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-- 174 (774)
Q Consensus 97 ~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~-- 174 (774)
...+.-..+.++ .+.+.++|+.+++. |..|+ ...+...+.-... .+....+++++..++..
T Consensus 193 n~li~~~~~~g~------~~~A~~lf~~M~~~-g~~p~-~~t~~~ll~a~~~---------~~~~~~~~~l~~~~~~~g~ 255 (697)
T PLN03081 193 GTIIGGLVDAGN------YREAFALFREMWED-GSDAE-PRTFVVMLRASAG---------LGSARAGQQLHCCVLKTGV 255 (697)
T ss_pred HHHHHHHHHCcC------HHHHHHHHHHHHHh-CCCCC-hhhHHHHHHHHhc---------CCcHHHHHHHHHHHHHhCC
Confidence 888877666544 67888888877754 44442 3334433333221 23445555555555432
Q ss_pred -cCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHH
Q 004093 175 -PTH-HVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLL 252 (774)
Q Consensus 175 -P~~-~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi 252 (774)
|.. ....+-..|.+ .++++.|..++.+ +++.+ ...|...|
T Consensus 256 ~~d~~~~n~Li~~y~k-----------------~g~~~~A~~vf~~--------------m~~~~-------~vt~n~li 297 (697)
T PLN03081 256 VGDTFVSCALIDMYSK-----------------CGDIEDARCVFDG--------------MPEKT-------TVAWNSML 297 (697)
T ss_pred CccceeHHHHHHHHHH-----------------CCCHHHHHHHHHh--------------CCCCC-------hhHHHHHH
Confidence 111 11111111111 2233444444332 01100 11344444
Q ss_pred HHHhcCCCCCCchhchHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Q 004093 253 TFEKGNPQRIDTASSNKRIIFTYEQCLMYL-YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKAL-PDSEMLRYAFAELE 330 (774)
Q Consensus 253 ~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~-p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~-P~~~~l~~~~a~l~ 330 (774)
..-..+ +..+.+..+|+++.... .-+...+..++..+.+.|++++|.++++..++.. +.+..++..+.+.+
T Consensus 298 ~~y~~~-------g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 298 AGYALH-------GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370 (697)
T ss_pred HHHHhC-------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence 322211 22333444555444321 1123344444444555555555555555555432 33334444445555
Q ss_pred HHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCCHHHH
Q 004093 331 ESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP-NFTYHVYVAYALMAFCQDKDPKLA 409 (774)
Q Consensus 331 e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~-~~~~~~~i~~A~lE~~~~gd~~~A 409 (774)
.+.|++++|..+|+++.+.+ ...|..++..+.+.|+.++|.++|++..+.+ ..+..+|........+ .|..++|
T Consensus 371 ~k~G~~~~A~~vf~~m~~~d----~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~-~g~~~~a 445 (697)
T PLN03081 371 SKWGRMEDARNVFDRMPRKN----LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY-SGLSEQG 445 (697)
T ss_pred HHCCCHHHHHHHHHhCCCCC----eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc-CCcHHHH
Confidence 55555555555555443311 2344555555555555555555555544321 1123333332222112 2455555
Q ss_pred HHHHHHHHHHcCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004093 410 HNVFEAGLKRFMHEP--AYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRK 487 (774)
Q Consensus 410 ~~ife~al~~~p~~~--~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~ 487 (774)
.++|+...+.++-.| ..+...++.+.+.|+.++|..+|++.- ..-...+|..++..-..+|+.+.+..+.+++.
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~----~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP----FKPTVNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 555555444322211 223344444555555555554444321 01122344444444444444444444444444
Q ss_pred HHcc
Q 004093 488 EALS 491 (774)
Q Consensus 488 ~~~p 491 (774)
+..|
T Consensus 522 ~~~p 525 (697)
T PLN03081 522 GMGP 525 (697)
T ss_pred CCCC
Confidence 4333
No 39
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.62 E-value=4.3e-12 Score=152.52 Aligned_cols=395 Identities=11% Similarity=0.018 Sum_probs=279.1
Q ss_pred CHHHHHHHHH-HhccCChhhHHHHHHHHHHhCC--CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCHHHH
Q 004093 22 NVETAEILAN-SALHLPVAQAAPIYEQLLSVFP--TAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLI--CLQVPLW 96 (774)
Q Consensus 22 d~~~W~~l~~-~~~~~~i~~Ar~~yeral~~~P--~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~--~p~~~lW 96 (774)
+...|...+. ..+.+.+.+|..+|+.+....| -+ ...|..++..+.+.++++.+++++..+... .|++.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~----~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLP----ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 4567888887 4566789999999999987543 34 678999999999999999999999998875 4888888
Q ss_pred HHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccC
Q 004093 97 RCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPT 176 (774)
Q Consensus 97 ~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~ 176 (774)
...+....+.+. .+.++++|+... . .+...|...+.-+. +.++.++|.++|++.+....
T Consensus 162 n~Li~~y~k~g~------~~~A~~lf~~m~-----~-~~~~t~n~li~~~~---------~~g~~~~A~~lf~~M~~~g~ 220 (697)
T PLN03081 162 NRVLLMHVKCGM------LIDARRLFDEMP-----E-RNLASWGTIIGGLV---------DAGNYREAFALFREMWEDGS 220 (697)
T ss_pred HHHHHHHhcCCC------HHHHHHHHhcCC-----C-CCeeeHHHHHHHHH---------HCcCHHHHHHHHHHHHHhCC
Confidence 888887766554 789999998432 1 24568888887644 35889999999999986422
Q ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHh
Q 004093 177 HHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEK 256 (774)
Q Consensus 177 ~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek 256 (774)
......|.....-... .+....++.+... .+... +.|.. ..|...|..--
T Consensus 221 ~p~~~t~~~ll~a~~~-------------~~~~~~~~~l~~~------~~~~g---~~~d~--------~~~n~Li~~y~ 270 (697)
T PLN03081 221 DAEPRTFVVMLRASAG-------------LGSARAGQQLHCC------VLKTG---VVGDT--------FVSCALIDMYS 270 (697)
T ss_pred CCChhhHHHHHHHHhc-------------CCcHHHHHHHHHH------HHHhC---CCccc--------eeHHHHHHHHH
Confidence 1111122111111101 0112222332221 11111 11211 14444444222
Q ss_pred cCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCC
Q 004093 257 GNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGA 335 (774)
Q Consensus 257 ~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~-~P~~~~l~~~~a~l~e~~g~ 335 (774)
.. +..+.+..+|+++. ..+...|..++..+.+.|+.++|.++|++.... ..-+...+......+.+.|+
T Consensus 271 k~-------g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 271 KC-------GDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred HC-------CCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 11 33455677787653 346789999999999999999999999999775 33345566677888889999
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 004093 336 IAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEA 415 (774)
Q Consensus 336 ~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~ 415 (774)
+++|+++++.+++........++..++..+.+.|+++.|+++|++..+..- .+|...+..... .|+.++|.++|++
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~---~t~n~lI~~y~~-~G~~~~A~~lf~~ 416 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL---ISWNALIAGYGN-HGRGTKAVEMFER 416 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCe---eeHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 999999999999876443456889999999999999999999999876433 344444333233 5999999999999
Q ss_pred HHHH--cCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 416 GLKR--FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRR 486 (774)
Q Consensus 416 al~~--~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~ 486 (774)
..+. .|+ ...+...+..+.+.|..++|+.+|+...+..+-.-....|..+++.-.+.|+++.+.++.+++
T Consensus 417 M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 417 MIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 8875 444 455667888889999999999999999874332224567888888888999999998887765
No 40
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.59 E-value=3.8e-12 Score=142.00 Aligned_cols=202 Identities=13% Similarity=0.059 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc----HHHHHHHH
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT----ALAHIQFI 362 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~----~~~~~~~a 362 (774)
.+|..++..+...|++++|..+|+++++..|.+...+..++.++...|++++|.+.|+++++..+... ...+..++
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 46778888999999999999999999998888888888999999999999999999999998766421 23556777
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHhcCChh
Q 004093 363 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP-AYILEYADFLSRLNDDR 441 (774)
Q Consensus 363 ~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~-~l~~~ya~~l~~~gd~~ 441 (774)
..+...+++++|..+|+++++..+.....++..+.+.... |++++|.++|++++...|++. ..+...+..+...|+.+
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQ-GDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 8888899999999999999987666678888888776564 999999999999999887663 55677888899999999
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc
Q 004093 442 NIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 442 ~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk 492 (774)
+|..+++++++..|. . .++..........|+.+.+.++++++.+..|.
T Consensus 267 ~A~~~l~~~~~~~p~--~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~ 314 (389)
T PRK11788 267 EGLEFLRRALEEYPG--A-DLLLALAQLLEEQEGPEAAQALLREQLRRHPS 314 (389)
T ss_pred HHHHHHHHHHHhCCC--c-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcC
Confidence 999999999998773 2 33466677777899999999999999998885
No 41
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.59 E-value=4.7e-12 Score=134.29 Aligned_cols=399 Identities=15% Similarity=0.216 Sum_probs=267.2
Q ss_pred HHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHhhccCCccHHHHHHHHHHH
Q 004093 47 QLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ-VPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFM 125 (774)
Q Consensus 47 ral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~-~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~a 125 (774)
.-++.+|++ ..-|..+++.+...+.+++.+++|+..+.-.|- ...|..|+.-+...++ .+.+..+|.++
T Consensus 33 erIkdNPtn----I~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~d------f~svE~lf~rC 102 (660)
T COG5107 33 ERIKDNPTN----ILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKD------FRSVESLFGRC 102 (660)
T ss_pred HHhhcCchh----HHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhh------HHHHHHHHHHH
Confidence 346789999 999999999999999999999999999988765 5899999998776555 78899999999
Q ss_pred HHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHccc--CccHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004093 126 LSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTP--THHVEQLWKDYENFENSVSRQLAKGLLS 203 (774)
Q Consensus 126 L~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P--~~~~e~l~~~y~~fE~~~~~~lak~~l~ 203 (774)
|... .+..+|..|+.+..+...... .+.-..+-++|+-.+..- .-..+.+|.+|..|.+....
T Consensus 103 L~k~----l~ldLW~lYl~YIRr~n~~~t---Gq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~-------- 167 (660)
T COG5107 103 LKKS----LNLDLWMLYLEYIRRVNNLIT---GQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEE-------- 167 (660)
T ss_pred Hhhh----ccHhHHHHHHHHHHhhCcccc---cchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccc--------
Confidence 9864 246899999999987643210 122334567777777521 11226789999998765321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhc-CCC---CC--CchhchHHHHHHHHH
Q 004093 204 EYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKG-NPQ---RI--DTASSNKRIIFTYEQ 277 (774)
Q Consensus 204 e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~-n~~---~~--d~~~~~~r~~~~yer 277 (774)
..++++-.++-+-|.-|.++|. . |-+. --.+|+.|-+||.. |.. .+ +..-..-.++..|++
T Consensus 168 --~~kwEeQqrid~iR~~Y~ral~-----t-P~~n-----leklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe 234 (660)
T COG5107 168 --LGKWEEQQRIDKIRNGYMRALQ-----T-PMGN-----LEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQE 234 (660)
T ss_pred --cccHHHHHHHHHHHHHHHHHHc-----C-cccc-----HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 1122222222233333334443 2 3222 13589999999864 211 00 222233334455655
Q ss_pred HHHhc------------------CCCHHHHHHHHHHHHHcC-----C--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004093 278 CLMYL------------------YHYPDIWYDYATWNAKSG-----S--IDAAIKVFQRALKALPDSEMLRYAFAELEES 332 (774)
Q Consensus 278 aL~~~------------------p~~~~iW~~ya~~l~~~g-----~--~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~ 332 (774)
....- .....-|++++.|+.+++ + .....-+|++++...|-+.++|+-|..+...
T Consensus 235 ~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~ 314 (660)
T COG5107 235 IQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIG 314 (660)
T ss_pred HHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 44321 123456999999998865 2 3456679999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC---------------CCC----CHHH--
Q 004093 333 RGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS---------------PNF----TYHV-- 391 (774)
Q Consensus 333 ~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~---------------~~~----~~~~-- 391 (774)
.++-++|...-++++...|. +...|+..+.-..+-++.+..|+++++. .+. ..+.
T Consensus 315 isd~q~al~tv~rg~~~sps----L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~ 390 (660)
T COG5107 315 ISDKQKALKTVERGIEMSPS----LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLL 390 (660)
T ss_pred ccHHHHHHHHHHhcccCCCc----hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHH
Confidence 99999999999999888775 5566666666666666666666655420 000 1111
Q ss_pred ---------HHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHH
Q 004093 392 ---------YVAYALMAFCQDKDPKLAHNVFEAGLKRF--MHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESI 460 (774)
Q Consensus 392 ---------~i~~A~lE~~~~gd~~~A~~ife~al~~~--p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~ 460 (774)
|.-....-.+ ....+.||++|-++-+.- .++.-+...|+.++. .||+.-|-.+||-.+..++ ++.
T Consensus 391 kr~~k~t~v~C~~~N~v~r-~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~--d~~ 466 (660)
T COG5107 391 KRINKLTFVFCVHLNYVLR-KRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFP--DST 466 (660)
T ss_pred HHHhhhhhHHHHHHHHHHH-HhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCC--Cch
Confidence 1111111112 246788999999887753 232222345555443 6899999999999999999 556
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 461 EVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 461 ~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
..-..|+.|-...+|-+.+..+++...+.+.
T Consensus 467 ~y~~kyl~fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 467 LYKEKYLLFLIRINDEENARALFETSVERLE 497 (660)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence 6677888899899999999888886666555
No 42
>PLN03077 Protein ECB2; Provisional
Probab=99.56 E-value=1.8e-11 Score=150.71 Aligned_cols=214 Identities=12% Similarity=0.000 Sum_probs=164.0
Q ss_pred hHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 268 NKRIIFTYEQCLMYL-YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 268 ~~r~~~~yeraL~~~-p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
.+....++..+++.. ..+..+.-.++..+.+.|++++|.++|+.. +.+...|..++..+...|+.++|.++|+++
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344556777777643 334455567788999999999999999886 567788999999999999999999999998
Q ss_pred hcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCH
Q 004093 347 LTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP--NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 424 (774)
Q Consensus 347 l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~--~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~ 424 (774)
.+.........|..++..+.+.|.+++|.++|+.+.+.. ..+...|.....+..+. |+.++|.++++.. ...| ++
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~-G~~~eA~~~~~~m-~~~p-d~ 657 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA-GKLTEAYNFINKM-PITP-DP 657 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC-CCHHHHHHHHHHC-CCCC-CH
Confidence 875433234567777788888999999999999998432 22356677666665554 9999999999875 2333 46
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 004093 425 AYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEAL 490 (774)
Q Consensus 425 ~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~ 490 (774)
..|..++......++.+.+....++.++..|. ....+..+.+.....|+++.+.++.+.|.+.-
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~--~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQHIFELDPN--SVGYYILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CcchHHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 78888888888889999999999999988773 33445555555668999999999999988753
No 43
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.56 E-value=1.7e-11 Score=141.10 Aligned_cols=188 Identities=16% Similarity=0.132 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH------------hC
Q 004093 269 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP--DSEMLRYAFAELEES------------RG 334 (774)
Q Consensus 269 ~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P--~~~~l~~~~a~l~e~------------~g 334 (774)
..+...+..++..+..++++|..++.|+.....+-.|.+-|++.++.-- .+....++++.++.+ .+
T Consensus 547 ~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk 626 (1018)
T KOG2002|consen 547 YEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKK 626 (1018)
T ss_pred HHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHH
Confidence 4456677888888888888888888888877777777777777776432 233344566665543 23
Q ss_pred CHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 004093 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFE 414 (774)
Q Consensus 335 ~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife 414 (774)
.+++|.++|.++|+.+|. +..+-...+-.+...|++..|+.||.++++.......+|++.|.+...+ |.+-.|+++|+
T Consensus 627 ~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~-~qy~~AIqmYe 704 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQ-GQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHH-HHHHHHHHHHH
Confidence 467888888888888775 2233344455666778888999999888887665578899888876665 88889999999
Q ss_pred HHHHHcC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchh
Q 004093 415 AGLKRFM--HEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEE 458 (774)
Q Consensus 415 ~al~~~p--~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~ 458 (774)
..++.|- ++..++...+..+...|.+.+|.....+|+...|.+.
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~ 750 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT 750 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc
Confidence 9998753 4677888888888888889999999999988887443
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.1e-10 Score=124.98 Aligned_cols=184 Identities=15% Similarity=0.103 Sum_probs=161.7
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 004093 268 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 347 (774)
Q Consensus 268 ~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l 347 (774)
.+.++..|+++|+.+|.+..+|...+.=+.+..+...|++.|.+|+..||.+-..|+.++..++..+...=|.-.|++++
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-------
Q 004093 348 TDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF------- 420 (774)
Q Consensus 348 ~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~------- 420 (774)
...|+ .+.+|..+++++.+.+++++|++.|++|+..++....+++..|.+.-.. ++.++|...|++-++..
T Consensus 426 ~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l-~d~~eAa~~yek~v~~~~~eg~~~ 503 (559)
T KOG1155|consen 426 ELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL-KDLNEAAQYYEKYVEVSELEGEID 503 (559)
T ss_pred hcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHhhcccc
Confidence 99998 5799999999999999999999999999998888889999999985555 89999999999998842
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 004093 421 MHEPAYILEYADFLSRLNDDRNIRALFERALSS 453 (774)
Q Consensus 421 p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~ 453 (774)
++......-.+.++.+.+++++|-.+..+++.-
T Consensus 504 ~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 504 DETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 222223344778888899999998887777765
No 45
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.54 E-value=3.8e-12 Score=129.45 Aligned_cols=202 Identities=19% Similarity=0.178 Sum_probs=173.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF 364 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~ 364 (774)
...+++..+..+...|++++|.+.+++++...|.+...+..++.++...|++++|.+.|+++++..+. ...++..++.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 35788889999999999999999999999999999999999999999999999999999999998876 56788999999
Q ss_pred HHHhcCHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhH
Q 004093 365 LRRTEGVEAARKYFLDARKSPN--FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRN 442 (774)
Q Consensus 365 ~~r~~~~~~Ar~if~~al~~~~--~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~ 442 (774)
+...|++++|...|++++..+. .....+...+.+.+.. |+++.|.+.|+++++..|+++..+..++.++...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA-GDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999997542 3356777777776664 999999999999999999999889999999999999999
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 004093 443 IRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEAL 490 (774)
Q Consensus 443 Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~ 490 (774)
|..+|++++...+ .....|..........|+.+.+..+.+++.+.+
T Consensus 188 A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 188 ARAYLERYQQTYN--QTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 9999999998754 234444456677778899988888777766554
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=6.6e-14 Score=149.24 Aligned_cols=168 Identities=21% Similarity=0.182 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKAL--PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 362 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~--P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a 362 (774)
++..|..++.++...++++++..+++++.... +.+..+|+.+|.++.+.|+.++|..+|+++++..|. ...++..++
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~ 187 (280)
T PF13429_consen 109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALA 187 (280)
T ss_dssp ---------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHH
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 44666666677777777777777777766543 567777777888887888888888888888887776 456777777
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhH
Q 004093 363 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRN 442 (774)
Q Consensus 363 ~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~ 442 (774)
.++...|+.++++.+++...+..+.+..+|..+|...... |+.+.|..+|+++++..|+++.++..|++.+...|+.++
T Consensus 188 ~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l-g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~ 266 (280)
T PF13429_consen 188 WLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL-GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDE 266 (280)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH-T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------
T ss_pred HHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc-ccccccccccccccccccccccccccccccccccccccc
Confidence 7777777777777777766654333344555666665565 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 004093 443 IRALFERALSSL 454 (774)
Q Consensus 443 Ar~lfEraL~~~ 454 (774)
|..++.+++..+
T Consensus 267 A~~~~~~~~~~l 278 (280)
T PF13429_consen 267 ALRLRRQALRLL 278 (280)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 999999988753
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=6.1e-11 Score=127.47 Aligned_cols=218 Identities=16% Similarity=0.079 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 366 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~ 366 (774)
.....-+.|+.-.|+.-.|..-|..+|+..|....+++.++.++.+..+-++..+.|+++...+|. ++.+|.+.+++..
T Consensus 327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRF 405 (606)
T ss_pred HHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHH
Confidence 344455677777899999999999999999999999999999999999999999999999999997 6789999999999
Q ss_pred HhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHH
Q 004093 367 RTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRAL 446 (774)
Q Consensus 367 r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~l 446 (774)
-.++++.|..-|++++...+.+.-.|++.+..+|+. +.+..+.+.|+.+.++||+.+++...+++.+..+++++.|.+.
T Consensus 406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~-~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~ 484 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ-HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQ 484 (606)
T ss_pred HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHH
Confidence 999999999999999998888888999999999997 8999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCch------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccccccCCcchhhhhhhhHhhh
Q 004093 447 FERALSSLPPE------ESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSR 511 (774)
Q Consensus 447 fEraL~~~p~e------~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk~~~d~~~a~~~~~~~~~~r 511 (774)
|++|+..-|.+ -...|-...+.+. =.+|+..+.++..+++++-|+- .-|++.++.-++.|
T Consensus 485 YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkc----e~A~~tlaq~~lQ~ 550 (606)
T KOG0547|consen 485 YDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKC----EQAYETLAQFELQR 550 (606)
T ss_pred HHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchH----HHHHHHHHHHHHHH
Confidence 99999976631 1223333334333 2388999999999999999853 12444455444444
No 48
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.52 E-value=7e-10 Score=132.97 Aligned_cols=439 Identities=10% Similarity=-0.025 Sum_probs=264.8
Q ss_pred CCCCHH-HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCHHHH
Q 004093 19 DKYNVE-TAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC-LQVPLW 96 (774)
Q Consensus 19 nP~d~~-~W~~l~~~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~-p~~~lW 96 (774)
.|...+ .....+-.++.++++.|+..|+++++..|.+ ......++.+....|++++|+.++++|+... .....-
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~----~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l 105 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQ----SGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL 105 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccc----hhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence 444443 3445666778888999999999999999988 6444488888888899999999999998322 222333
Q ss_pred HHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcc-c
Q 004093 97 RCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-P 175 (774)
Q Consensus 97 ~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~-P 175 (774)
...+......++ .+++.++|+.+++ .+|.+..++...+.. +.+.++.++|.+.+++++.. |
T Consensus 106 lalA~ly~~~gd------yd~Aiely~kaL~---~dP~n~~~l~gLa~~---------y~~~~q~~eAl~~l~~l~~~dp 167 (822)
T PRK14574 106 ASAARAYRNEKR------WDQALALWQSSLK---KDPTNPDLISGMIMT---------QADAGRGGVVLKQATELAERDP 167 (822)
T ss_pred HHHHHHHHHcCC------HHHHHHHHHHHHh---hCCCCHHHHHHHHHH---------HhhcCCHHHHHHHHHHhcccCc
Confidence 333334443333 5688888986665 466666777644333 22346778888888888864 4
Q ss_pred CccHHHHHHHHHHHH-HHhhHH--HHHHHHHHHHHHHHHH-HHHHH---HHH---HHHHHhhhccCCCCCCCCchhHHHH
Q 004093 176 THHVEQLWKDYENFE-NSVSRQ--LAKGLLSEYQSKYTSA-RAVYR---ERK---KYCEEIDWNMLAVPPTGSYKEEQQW 245 (774)
Q Consensus 176 ~~~~e~l~~~y~~fE-~~~~~~--lak~~l~e~~~~y~~A-r~i~k---~~~---~~~~~L~~~~~~~pP~~~~~~~~q~ 245 (774)
. +...+...|..-. ....++ ..++++... +...++ ...+. ... ...+.+. ..|...+. ..
T Consensus 168 ~-~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~----~~p~~f~~--~~-- 237 (822)
T PRK14574 168 T-VQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAK----ENPNLVSA--EH-- 237 (822)
T ss_pred c-hHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHH----hCccccCH--HH--
Confidence 3 2221222221100 000001 112222110 111110 00000 000 0000010 01111110 01
Q ss_pred HHHHHHHH------HHhcCC-CCCCchhchHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004093 246 IAWKRLLT------FEKGNP-QRIDTASSNKRIIFTYEQCLMYLYHY-------PDIWYDYATWNAKSGSIDAAIKVFQR 311 (774)
Q Consensus 246 ~lW~~yi~------~Ek~n~-~~~d~~~~~~r~~~~yeraL~~~p~~-------~~iW~~ya~~l~~~g~~e~A~~v~er 311 (774)
..|..+-. +-.... ...++....+++..-|++.+...+.. -.+.++..-.+...+++.++++.|+.
T Consensus 238 ~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~ 317 (822)
T PRK14574 238 YRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEA 317 (822)
T ss_pred HHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 12222111 110000 01122335667778888888744332 34455677777888999999999998
Q ss_pred HHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 004093 312 ALKAL-PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT-----TALAHIQFIRFLRRTEGVEAARKYFLDARKSP 385 (774)
Q Consensus 312 Al~~~-P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~-----~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~ 385 (774)
.-... |-..-+....|+.+...+..++|..+|+.++...+.. .......+.-.+...+++++|+.++++..+.+
T Consensus 318 l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 318 MEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 87543 2233345567888889999999999999998865311 11122334444556899999999999988732
Q ss_pred C--------------CCHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004093 386 N--------------FTYHVY-VAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERA 450 (774)
Q Consensus 386 ~--------------~~~~~~-i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEra 450 (774)
+ ..|.-+ ...|..... .|+...|.++++..+...|.|+.+++.+++++...|.+.+|..+++++
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~-~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA-LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2 223322 223443233 499999999999999999999999999999999999999999999888
Q ss_pred HhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc
Q 004093 451 LSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 451 L~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk 492 (774)
+...|......+ ....--...|++..+.++.+...+.+|+
T Consensus 477 ~~l~P~~~~~~~--~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 477 ESLAPRSLILER--AQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred hhhCCccHHHHH--HHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 888773322222 2222223569999999999999999983
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=8.2e-12 Score=145.76 Aligned_cols=218 Identities=10% Similarity=-0.049 Sum_probs=176.1
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKS---------GSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIA 337 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~---------g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e 337 (774)
..+.+...|++++..+|+++..|..++.++... +++++|...+++|++..|++...|..++.++...|+++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 456788999999999999999999988766532 34789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 004093 338 AAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGL 417 (774)
Q Consensus 338 ~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al 417 (774)
+|...|+++++.+|+ ...+|..++..+...|++++|...|+++++..+.....+...+.+.+. .|++++|...+++++
T Consensus 356 ~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g~~eeA~~~~~~~l 433 (553)
T PRK12370 356 VGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-ccCHHHHHHHHHHHH
Confidence 999999999999997 678999999999999999999999999999766655554444444445 489999999999999
Q ss_pred HHc-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 004093 418 KRF-MHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEAL 490 (774)
Q Consensus 418 ~~~-p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~ 490 (774)
... |+++..+...+.++..+|+.++|+..+++.+...| .....+......-...|+ .+....++..+..
T Consensus 434 ~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~ 503 (553)
T PRK12370 434 SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI--TGLIAVNLLYAEYCQNSE--RALPTIREFLESE 503 (553)
T ss_pred HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc--hhHHHHHHHHHHHhccHH--HHHHHHHHHHHHh
Confidence 875 77888888889999999999999999999877655 333444444333334453 4555555544444
No 50
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.8e-10 Score=130.95 Aligned_cols=411 Identities=14% Similarity=0.163 Sum_probs=272.1
Q ss_pred hhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHhhccCCccHH
Q 004093 38 VAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQE 116 (774)
Q Consensus 38 i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p-~~~lW~~Yl~~~~~~~~~~~~~~~e 116 (774)
-++-...++.-+...+.+ ......||.+..+.|++++.+..=+.+..+.| +..+|+.|+.-+.... ..++..
T Consensus 95 ~~~ei~t~~ee~ai~~y~----~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt---~s~~~~ 167 (881)
T KOG0128|consen 95 GNQEIRTLEEELAINSYK----YAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMT---QSEERK 167 (881)
T ss_pred chhHHHHHHHHhcccccc----hHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc---cCcchh
Confidence 344445556666677777 77777788888899999888877777777764 5789999998665422 235678
Q ss_pred HHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHccc---CccHHHHHHHHHHHHHHh
Q 004093 117 ETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTP---THHVEQLWKDYENFENSV 193 (774)
Q Consensus 117 ~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P---~~~~e~l~~~y~~fE~~~ 193 (774)
.+...|++||. |.++..||..|+.|....... +...+.++..|.+|++++..- ...-..+|..|..||..+
T Consensus 168 ~v~~~~ekal~----dy~~v~iw~e~~~y~~~~~~~--~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~ 241 (881)
T KOG0128|consen 168 EVEELFEKALG----DYNSVPIWEEVVNYLVGFGNV--AKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTY 241 (881)
T ss_pred HHHHHHHHHhc----ccccchHHHHHHHHHHhcccc--ccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHH
Confidence 88889997663 678999999999998765432 222356788999999999632 223368999999998764
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHH--HHHHHHhcCCCCCCchhchHH
Q 004093 194 SRQL-AKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWK--RLLTFEKGNPQRIDTASSNKR 270 (774)
Q Consensus 194 ~~~l-ak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~--~yi~~Ek~n~~~~d~~~~~~r 270 (774)
-... -++++. -|...+... .+-.-...++.-|. .++.-+..++.. .....+.
T Consensus 242 l~n~~~~qv~a-----------------~~~~el~~~------~D~~~~~~~~~~~sk~h~~~~~~~~~~~--a~~~l~~ 296 (881)
T KOG0128|consen 242 LCNVEQRQVIA-----------------LFVRELKQP------LDEDTRGWDLSEQSKAHVYDVETKKLDD--ALKNLAK 296 (881)
T ss_pred HHhHHHHHHHH-----------------HHHHHHhcc------chhhhhHHHHHHHHhcchHHHHhccHHH--HHHHHHH
Confidence 1110 011111 122222211 11000012222333 233333332211 1123355
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHhcC
Q 004093 271 IIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEES-RGAIAAAKKLYESLLTD 349 (774)
Q Consensus 271 ~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~-~g~~e~A~~iyek~l~~ 349 (774)
....+++.++..+.....|..|+.|+...|+......+++|++.-.+.+..+|+.|+.+.-. ++--+.+..+|.+++..
T Consensus 297 ~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~ 376 (881)
T KOG0128|consen 297 ILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS 376 (881)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcC
Confidence 67889999999999999999999999999999999999999999999889999999876543 34445667889999998
Q ss_pred CCCCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHc---
Q 004093 350 SVNTTALAHIQFIRFLRR-TEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ-----DKDPKLAHNVFEAGLKRF--- 420 (774)
Q Consensus 350 ~~~~~~~~~~~~a~~~~r-~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~-----~gd~~~A~~ife~al~~~--- 420 (774)
+|- ...+|-.+...+.| ...+...-+.|.+++... ...+..+..+...+ ..+++.-++.|..|...+
T Consensus 377 cp~-tgdL~~rallAleR~re~~~vI~~~l~~~ls~~---~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~ 452 (881)
T KOG0128|consen 377 CPW-TGDLWKRALLALERNREEITVIVQNLEKDLSMT---VELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTEL 452 (881)
T ss_pred Cch-HHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH---HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHH
Confidence 886 45678766643333 444555666666666542 22333322222222 124455677777776532
Q ss_pred -CC----CHHHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 421 -MH----EPAYILEYADFLSRL-NDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 421 -p~----~~~l~~~ya~~l~~~-gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
.+ ..+++..++.++..+ ++.+++|.+...-+..-. -+....|..|++.|..+|+...+.++++++.-...
T Consensus 453 ~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~-~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~ 528 (881)
T KOG0128|consen 453 YGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGG-GSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVV 528 (881)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCc-chHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCc
Confidence 21 235667888888764 789999999988777533 23344999999999999999999997777765443
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=9e-10 Score=118.02 Aligned_cols=217 Identities=13% Similarity=0.038 Sum_probs=180.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q 004093 271 IIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS 350 (774)
Q Consensus 271 ~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~ 350 (774)
+..+-+....++..-++.-.-.|.++.-.++.++|...|+||++.+|+...+|..++.=+...++-..|.+.|.++++.+
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 34445556666666666666677788778889999999999999999999999999988888889999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHH
Q 004093 351 VNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEY 430 (774)
Q Consensus 351 ~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~y 430 (774)
|. .-.+|..+++.+.-.+-..-|.-.|++|.+..+....+|+.++...... +..+.|++.|.+++.....+...+...
T Consensus 395 p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl-~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 395 PR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL-NRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred ch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh-ccHHHHHHHHHHHHhccccchHHHHHH
Confidence 97 4689999999999999999999999999999888999999999986565 899999999999999877777888899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcC-----CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004093 431 ADFLSRLNDDRNIRALFERALSSL-----PPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEA 489 (774)
Q Consensus 431 a~~l~~~gd~~~Ar~lfEraL~~~-----p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~ 489 (774)
++++.++++.++|-.+|++.++.. -.+.....-.....++.+.+|.+.+..+..+....
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 999999999999999999999843 11223333333677888899887777655555443
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=2.5e-11 Score=123.43 Aligned_cols=187 Identities=13% Similarity=0.067 Sum_probs=166.3
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
..+.+...|++++...|.+...|..++..+...|++++|.+.|++++...|.+...+..++.++...|++++|...|+++
T Consensus 46 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 125 (234)
T TIGR02521 46 DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQA 125 (234)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCC-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHH
Q 004093 347 LTDSVN-TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPA 425 (774)
Q Consensus 347 l~~~~~-~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~ 425 (774)
+..... ....++..++..+...|+++.|...|.++++..+.....+..++.+.+.. |+++.|..++++++...++++.
T Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~ 204 (234)
T TIGR02521 126 IEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR-GQYKDARAYLERYQQTYNQTAE 204 (234)
T ss_pred HhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHH
Confidence 975421 13457888888999999999999999999997766678888888887765 9999999999999999888888
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 004093 426 YILEYADFLSRLNDDRNIRALFERALSSL 454 (774)
Q Consensus 426 l~~~ya~~l~~~gd~~~Ar~lfEraL~~~ 454 (774)
.+...+.++...|+.+.|+.+.+.+....
T Consensus 205 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 205 SLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 88888899999999999999988876543
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=4.8e-11 Score=126.42 Aligned_cols=404 Identities=13% Similarity=0.124 Sum_probs=269.7
Q ss_pred hhhHHHHHHHHHH--hCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhcc----C
Q 004093 38 VAQAAPIYEQLLS--VFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKK----G 111 (774)
Q Consensus 38 i~~Ar~~yeral~--~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~~~lW~~Yl~~~~~~~~~~----~ 111 (774)
.++|.+.|+-.++ .||++ +.+-...++++.+.++|.+|.+.|+-+|..+|++.-= .-++.+. ++. -
T Consensus 217 ~~ealntyeiivknkmf~na----g~lkmnigni~~kkr~fskaikfyrmaldqvpsink~-~rikil~---nigvtfiq 288 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMFPNA----GILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKD-MRIKILN---NIGVTFIQ 288 (840)
T ss_pred HHHHhhhhhhhhcccccCCC----ceeeeeecceeeehhhHHHHHHHHHHHHhhccccchh-hHHHHHh---hcCeeEEe
Confidence 6889999999985 79999 8888888899999999999999999999999886321 1222221 121 0
Q ss_pred CccHHHHHHHHHHHHHhcCCCCCChHhH-HHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCccH-----------
Q 004093 112 TEGQEETRKAFDFMLSHVGSDISSGPIW-LEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHV----------- 179 (774)
Q Consensus 112 ~~~~e~ar~~ye~aL~~vg~d~~s~~iW-~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~~~----------- 179 (774)
....+.+...|+.++... |+-...+ .-.+-|. .+.-+..++.|++.|.+|....
T Consensus 289 ~gqy~dainsfdh~m~~~---pn~~a~~nl~i~~f~-----------i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEEA---PNFIAALNLIICAFA-----------IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred cccchhhHhhHHHHHHhC---ccHHhhhhhhhhhee-----------cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 133456777777666532 2211111 1112221 2556777888889887763211
Q ss_pred -HHHH-----H-HHHHHHHHhhHHHHH-------HHHHH-----H---------------------------------HH
Q 004093 180 -EQLW-----K-DYENFENSVSRQLAK-------GLLSE-----Y---------------------------------QS 207 (774)
Q Consensus 180 -e~l~-----~-~y~~fE~~~~~~lak-------~~l~e-----~---------------------------------~~ 207 (774)
..+. . ....||.. ++..++ +++.- + .+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~-~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~ 433 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKE-NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNG 433 (840)
T ss_pred chHHHHHHHhhHHHHHHHHh-hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhcc
Confidence 1111 1 11223222 111111 11110 0 01
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHH
Q 004093 208 KYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPD 287 (774)
Q Consensus 208 ~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~ 287 (774)
+|+.|..+++- |+. .. +.. ......-...+.|..+- .....+..+-..++..+..++.
T Consensus 434 d~~~aieilkv---~~~---------kd-nk~--~saaa~nl~~l~flqgg-------k~~~~aqqyad~aln~dryn~~ 491 (840)
T KOG2003|consen 434 DIEGAIEILKV---FEK---------KD-NKT--ASAAANNLCALRFLQGG-------KDFADAQQYADIALNIDRYNAA 491 (840)
T ss_pred CHHHHHHHHHH---HHh---------cc-chh--hHHHhhhhHHHHHHhcc-------cchhHHHHHHHHHhcccccCHH
Confidence 11111111110 000 00 000 00000000112222211 1223344556777878888877
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Q 004093 288 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR 367 (774)
Q Consensus 288 iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r 367 (774)
...+-+....-+|++++|.+.|..|+.....+....+..+...+.+|++++|.++|-++-.+.-+ ...+..+.+.++..
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n-n~evl~qianiye~ 570 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN-NAEVLVQIANIYEL 570 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 77777777777899999999999999998888999999999999999999999999887665444 47888999999999
Q ss_pred hcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 004093 368 TEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALF 447 (774)
Q Consensus 368 ~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lf 447 (774)
.++...|+.++.++...-+..+.+...++.+ |...||...|.+.+-.....||.+.+.+.-.+.+++...=-+++..+|
T Consensus 571 led~aqaie~~~q~~slip~dp~ilskl~dl-ydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ 649 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSLIPNDPAILSKLADL-YDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYF 649 (840)
T ss_pred hhCHHHHHHHHHHhcccCCCCHHHHHHHHHH-hhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999877889999999987 444599999999999999999999888766677777776678999999
Q ss_pred HHHHhcCCchhHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHcc
Q 004093 448 ERALSSLPPEESIEVWKRFTQFE-QMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 448 EraL~~~p~e~~~~lw~~~~~fE-~~~Gd~~~i~kv~~R~~~~~p 491 (774)
|+|--..| ...-|..++.-. .+.|++..+..+++..-+.||
T Consensus 650 ekaaliqp---~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 650 EKAALIQP---NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HHHHhcCc---cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 99987666 345677765433 358999999999999999999
No 54
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.43 E-value=2.3e-09 Score=128.53 Aligned_cols=397 Identities=12% Similarity=0.008 Sum_probs=236.8
Q ss_pred CCCCCHHHHHHHHH-HhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHH--HHHHHHcCCHHHHHHHHHHHHccCCC-H
Q 004093 18 ADKYNVETAEILAN-SALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQY--VEAYMAVNNDDATKQLFSRCLLICLQ-V 93 (774)
Q Consensus 18 ~nP~d~~~W~~l~~-~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y--~~~e~~~~n~~~a~~ifeRaL~~~p~-~ 93 (774)
.+|.+..+...++. ....+..++|+..+++++ .|.+ ....... +......|++++|.++|++++...|+ .
T Consensus 63 ~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n----~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~ 136 (822)
T PRK14574 63 AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMN----ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP 136 (822)
T ss_pred hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 77777422223333 223467788888888888 4444 3334444 56777778888888888888887654 5
Q ss_pred HHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHc
Q 004093 94 PLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVV 173 (774)
Q Consensus 94 ~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~ 173 (774)
+++...+......+ ..+.+.+.++ +.+..+|. ..+....-++.. ..++...|..+|++++.
T Consensus 137 ~~l~gLa~~y~~~~------q~~eAl~~l~---~l~~~dp~--~~~~l~layL~~--------~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 137 DLISGMIMTQADAG------RGGVVLKQAT---ELAERDPT--VQNYMTLSYLNR--------ATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhcC------CHHHHHHHHH---HhcccCcc--hHHHHHHHHHHH--------hcchHHHHHHHHHHHHH
Confidence 66643333222221 2345555555 44444443 112122222221 12334447788888886
Q ss_pred ccCccHHHHHHHHHHHHHHhh-HHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHH
Q 004093 174 TPTHHVEQLWKDYENFENSVS-RQLAKGLLSEY-------------------------------QSKYTSARAVYRERKK 221 (774)
Q Consensus 174 ~P~~~~e~l~~~y~~fE~~~~-~~lak~~l~e~-------------------------------~~~y~~Ar~i~k~~~~ 221 (774)
....+.+ ++..|..-....+ ...+.+++.+. ...|..+...+.....
T Consensus 198 ~~P~n~e-~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LAPTSEE-VLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 5333322 2222222222211 11222222211 0122222222222222
Q ss_pred HHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHH
Q 004093 222 YCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMY---LYHYPDIWYDYATWNAK 298 (774)
Q Consensus 222 ~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~---~p~~~~iW~~ya~~l~~ 298 (774)
+.... ...|+.... ..+ +-..++-... ..+..+.|+..|+..-.. .|.+. -..+|..+..
T Consensus 277 l~~~~----~~~p~~~~~--~~~--~~~Drl~aL~-------~r~r~~~vi~~y~~l~~~~~~~P~y~--~~a~adayl~ 339 (822)
T PRK14574 277 LLTRW----GKDPEAQAD--YQR--ARIDRLGALL-------VRHQTADLIKEYEAMEAEGYKMPDYA--RRWAASAYID 339 (822)
T ss_pred HHhhc----cCCCccchH--HHH--HHHHHHHHHH-------HhhhHHHHHHHHHHhhhcCCCCCHHH--HHHHHHHHHh
Confidence 21111 112222110 000 0011111100 113467788888877643 35554 4446788889
Q ss_pred cCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC--------------CcHHHH
Q 004093 299 SGSIDAAIKVFQRALKALP------DSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN--------------TTALAH 358 (774)
Q Consensus 299 ~g~~e~A~~v~erAl~~~P------~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~--------------~~~~~~ 358 (774)
.+.+++|..+|++++...| .+......+.-.+...+++++|..+.++..+..|- +-..+.
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 9999999999999998653 22221222333344678999999999999875441 112355
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 004093 359 IQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLN 438 (774)
Q Consensus 359 ~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~g 438 (774)
...+..+...|++.+|.+.+++.+...+.+..+++..|.++... |.+..|..+++.+....|++..+....+.....++
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~R-g~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLAR-DLPRKAEQELKAVESLAPRSLILERAQAETAMALQ 498 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhh
Confidence 55667777889999999999999998888899999999998775 99999999999999999999988888888889999
Q ss_pred ChhHHHHHHHHHHhcCCchh
Q 004093 439 DDRNIRALFERALSSLPPEE 458 (774)
Q Consensus 439 d~~~Ar~lfEraL~~~p~e~ 458 (774)
+..+|..+.+.+++..|.+.
T Consensus 499 e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 499 EWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred hHHHHHHHHHHHHhhCCCch
Confidence 99999999999999999543
No 55
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=5.7e-11 Score=132.52 Aligned_cols=287 Identities=14% Similarity=0.121 Sum_probs=199.3
Q ss_pred ChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHHhhccCC
Q 004093 37 PVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL----QVPLWRCYIRFIRKVYEKKGT 112 (774)
Q Consensus 37 ~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p----~~~lW~~Yl~~~~~~~~~~~~ 112 (774)
+-.+|..+|++.-...++. .-+....+..+....++++++++|++.=...| ..++.-.-+.-..+..
T Consensus 334 ~~~~A~~~~~klp~h~~nt----~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----- 404 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNT----GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----- 404 (638)
T ss_pred HHHHHHHHHHhhHHhcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH-----
Confidence 5678999999977788888 75556888999999999999999999887654 2344333333322211
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHH
Q 004093 113 EGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENS 192 (774)
Q Consensus 113 ~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~~~e~l~~~y~~fE~~ 192 (774)
.-... |-..+..++++...|-...++..- |+.-+.|.+.|+|||++..... |+--.
T Consensus 405 -----~Ls~L--aq~Li~~~~~sPesWca~GNcfSL---------Qkdh~~Aik~f~RAiQldp~fa------YayTL-- 460 (638)
T KOG1126|consen 405 -----ALSYL--AQDLIDTDPNSPESWCALGNCFSL---------QKDHDTAIKCFKRAIQLDPRFA------YAYTL-- 460 (638)
T ss_pred -----HHHHH--HHHHHhhCCCCcHHHHHhcchhhh---------hhHHHHHHHHHHHhhccCCccc------hhhhh--
Confidence 11111 224566789999999999998643 5678999999999998754311 11000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHH
Q 004093 193 VSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRII 272 (774)
Q Consensus 193 ~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~ 272 (774)
+-.+++.-|+ .+.++
T Consensus 461 ------------------------------------------------------lGhE~~~~ee-----------~d~a~ 475 (638)
T KOG1126|consen 461 ------------------------------------------------------LGHESIATEE-----------FDKAM 475 (638)
T ss_pred ------------------------------------------------------cCChhhhhHH-----------HHhHH
Confidence 0001111111 12345
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 004093 273 FTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 273 ~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~ 352 (774)
..|+.||..+|.+..+||-++..+.++++++.|.-.|++|+..+|.+..+..-++.++.+.|..|+|..+|++|+..++.
T Consensus 476 ~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 476 KSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred HHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 67888888888888888888888888888888888888888888888877777888888888888888888888887776
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC
Q 004093 353 TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE 423 (774)
Q Consensus 353 ~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~ 423 (774)
.+..-+..+..+...+++++|...+++.-+..+....++...+.+.-. .|..+.|.+-|--|+...|.-
T Consensus 556 -n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~-~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 556 -NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKR-LGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred -CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHH-HccchHHHHhhHHHhcCCCcc
Confidence 344445556666667777777777777777665556666666665333 377777777777777766643
No 56
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.42 E-value=2.9e-09 Score=123.08 Aligned_cols=412 Identities=15% Similarity=0.102 Sum_probs=263.8
Q ss_pred ChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC------CHHHHHHHHHHHHHHhhcc
Q 004093 37 PVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL------QVPLWRCYIRFIRKVYEKK 110 (774)
Q Consensus 37 ~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p------~~~lW~~Yl~~~~~~~~~~ 110 (774)
..+.|-..|..++...|.+ .-..+--+.+....++|-.|..+|.++|...| -+-+|.|+.+.-.
T Consensus 145 ~~~~A~a~F~~Vl~~sp~N----il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~------ 214 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQSPDN----ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGM------ 214 (1018)
T ss_pred cHHHHHHHHHHHHhhCCcc----hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccc------
Confidence 3689999999999999999 77777777777788899999999999998863 3578888887643
Q ss_pred CCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcc-cCccH------HHHH
Q 004093 111 GTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHV------EQLW 183 (774)
Q Consensus 111 ~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~-P~~~~------e~l~ 183 (774)
.+.+..+|+||++ +||.+......+..+..... +.+.+..+...++++-.. +.+.+ ..+|
T Consensus 215 ----~~~a~~a~~ralq---Ldp~~v~alv~L~~~~l~~~------d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy 281 (1018)
T KOG2002|consen 215 ----SEKALLAFERALQ---LDPTCVSALVALGEVDLNFN------DSDSYKKGVQLLQRAYKENNENPVALNHLANHFY 281 (1018)
T ss_pred ----hhhHHHHHHHHHh---cChhhHHHHHHHHHHHHHcc------chHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHh
Confidence 4678999997776 57888888777777665431 235667777888888754 22211 0111
Q ss_pred --HHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 004093 184 --KDYENFEN----SVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKG 257 (774)
Q Consensus 184 --~~y~~fE~----~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~ 257 (774)
.+|..-.. .+.....+-++++ .-|.-+|. |-.+.+|+++....+....-.+..-.-..+.+-..||.
T Consensus 282 fK~dy~~v~~la~~ai~~t~~~~~~ae--s~Y~~gRs-~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~---- 354 (1018)
T KOG2002|consen 282 FKKDYERVWHLAEHAIKNTENKSIKAE--SFYQLGRS-YHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK---- 354 (1018)
T ss_pred hcccHHHHHHHHHHHHHhhhhhHHHHH--HHHHHHHH-HHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHH----
Confidence 01111110 0000011111111 01111111 11122222222111111111110000001111111111
Q ss_pred CCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 004093 258 NPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG----SIDAAIKVFQRALKALPDSEMLRYAFAELEESR 333 (774)
Q Consensus 258 n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g----~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~ 333 (774)
.+..+.+..+|++.++.+|++.+...-++.++...+ ..++|..++.+++...|.+...|+.++.+++..
T Consensus 355 -------~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 355 -------RGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred -------hchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 135677889999999999999999999999998775 468899999999999999999999999998875
Q ss_pred CCHHHHHHHHHHHhcC----CCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC------C----CCHHHHHHHHHHH
Q 004093 334 GAIAAAKKLYESLLTD----SVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP------N----FTYHVYVAYALMA 399 (774)
Q Consensus 334 g~~e~A~~iyek~l~~----~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~------~----~~~~~~i~~A~lE 399 (774)
.- ..+..+|.+++.. ....+..+....+....+.|++..|+..|++|.... . .....-.+.|.+.
T Consensus 428 d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 428 DP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred Ch-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 44 4448888888742 111246777888888889999999999999998641 1 1122345566665
Q ss_pred HhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHH
Q 004093 400 FCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDST 479 (774)
Q Consensus 400 ~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i 479 (774)
... ++.+.|-++|...++.+|.-.+-.+..+-+....+...+|..++..++.... ....+|..+.+++.......-+
T Consensus 507 E~l-~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~--~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 507 EEL-HDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS--SNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred Hhh-hhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc--CCcHHHHHHHHHHHhhhhhccc
Confidence 454 7999999999999999986444333333344455888999999999998654 4567888777666554444444
Q ss_pred HHHHHHHHHH
Q 004093 480 LKVEQRRKEA 489 (774)
Q Consensus 480 ~kv~~R~~~~ 489 (774)
.+-+.++.+.
T Consensus 584 ~k~f~~i~~~ 593 (1018)
T KOG2002|consen 584 KKKFETILKK 593 (1018)
T ss_pred ccHHHHHHhh
Confidence 4444444443
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.41 E-value=1.4e-10 Score=135.54 Aligned_cols=207 Identities=10% Similarity=-0.054 Sum_probs=165.2
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
...+.+...+++++..+|+++.+|..++..+...|++++|...|++|++.+|++...|+.++.++...|++++|...|++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCH
Q 004093 346 LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS-PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 424 (774)
Q Consensus 346 ~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~-~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~ 424 (774)
+++.+|.. ...+..++..+...|++++|...+++++.. ++.....+...+.+... .|+.++|+..+++.+...|+..
T Consensus 398 Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~-~G~~~eA~~~~~~~~~~~~~~~ 475 (553)
T PRK12370 398 CLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSL-KGKHELARKLTKEISTQEITGL 475 (553)
T ss_pred HHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHh-CCCHHHHHHHHHHhhhccchhH
Confidence 99999973 344444444556688999999999999875 34456666666666545 4999999999999888888877
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHH
Q 004093 425 AYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDS 478 (774)
Q Consensus 425 ~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~ 478 (774)
..+...+..+...| ++|+..+++.++.........-| ...|+.-+||.+.
T Consensus 476 ~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~ 525 (553)
T PRK12370 476 IAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIA 525 (553)
T ss_pred HHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHH
Confidence 77777777777777 48888888877643311111222 3456666787644
No 58
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.40 E-value=1.2e-12 Score=139.67 Aligned_cols=218 Identities=16% Similarity=0.169 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 268 NKRIIFTYEQCLMY--LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 268 ~~r~~~~yeraL~~--~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
.+.+..++++.+.. .|+++++|..++.+....++.+.|++.|++.+...+.+......++.+ ...+++++|..++++
T Consensus 24 ~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~ 102 (280)
T PF13429_consen 24 YEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEK 102 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence 34556777666554 388899999999999999999999999999998888777776677777 577889999999988
Q ss_pred HhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC
Q 004093 346 LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP--NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE 423 (774)
Q Consensus 346 ~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~--~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~ 423 (774)
+.+..++ +..+..++..+.+.++++++..+++++...+ +.+..+|...|.+.... |+.++|.++|+++++..|++
T Consensus 103 ~~~~~~~--~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~-G~~~~A~~~~~~al~~~P~~ 179 (280)
T PF13429_consen 103 AYERDGD--PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL-GDPDKALRDYRKALELDPDD 179 (280)
T ss_dssp -----------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH-TT-
T ss_pred ccccccc--cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC
Confidence 8876653 5667778888888999999999999977644 34678888888887665 99999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 424 PAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 424 ~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
+.++..++.+++..|+.++++.++++.....| .+..+|..+.......|+.+.+...+++..+..|
T Consensus 180 ~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~--~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 180 PDARNALAWLLIDMGDYDEAREALKRLLKAAP--DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H--TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc--CHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99999999999999999999988888887654 3346788888888889999999999999888887
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=1.1e-10 Score=130.20 Aligned_cols=216 Identities=15% Similarity=0.080 Sum_probs=182.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 004093 274 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT 353 (774)
Q Consensus 274 ~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~ 353 (774)
+-+..+..+|+.|+.|...+.++.-+++.+.|++.|+||++.+|...-.+..++.=+.....+|+|...|.+++..++.
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 3455666899999999999999999999999999999999999987766666665556678899999999999999987
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004093 354 TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADF 433 (774)
Q Consensus 354 ~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~ 433 (774)
.-.+|+.++-.+.+++.++.|.-.|++|++..+.+..+......++..+ |..++|..+|++|+...|.++--....+..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~-k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQL-KRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHh-hhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 4579999999999999999999999999998776566655566665565 999999999999999999998878889999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc
Q 004093 434 LSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRT 493 (774)
Q Consensus 434 l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk~ 493 (774)
+...+++++|...+|..-...|. ...++........++|....+.+-+-=+..+-||.
T Consensus 567 l~~~~~~~eal~~LEeLk~~vP~--es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELVPQ--ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhCcc--hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 99999999999999999988884 34555566666667887777777666666666644
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.34 E-value=1.6e-10 Score=114.27 Aligned_cols=189 Identities=15% Similarity=0.082 Sum_probs=166.5
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
+....+..-++++|+++|.+...|.-.|.++.+.|..+.|.+.|++|++..|++.++..+|+-|+..+|.+++|...|++
T Consensus 49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~ 128 (250)
T COG3063 49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFER 128 (250)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCC-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCH
Q 004093 346 LLTDSVN-TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 424 (774)
Q Consensus 346 ~l~~~~~-~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~ 424 (774)
++....- ..+..|...+-+..++|..+.|+..|+++++..+.........+.+++.. |++-.|+..+++-....+-+.
T Consensus 129 Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~-~~y~~Ar~~~~~~~~~~~~~A 207 (250)
T COG3063 129 ALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKA-GDYAPARLYLERYQQRGGAQA 207 (250)
T ss_pred HHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhc-ccchHHHHHHHHHHhcccccH
Confidence 9974321 24678888888999999999999999999998888899999999999986 999999999999998877777
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 425 AYILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 425 ~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
+-++.-+.+....||-..+-.+=.+.-..+|
T Consensus 208 ~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 208 ESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 7666778888889998777665555555677
No 61
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.30 E-value=1.2e-08 Score=114.87 Aligned_cols=288 Identities=13% Similarity=-0.017 Sum_probs=178.9
Q ss_pred cCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCH--HHHHHHHHHHHHHhhccCC
Q 004093 35 HLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQV--PLWRCYIRFIRKVYEKKGT 112 (774)
Q Consensus 35 ~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~~--~lW~~Yl~~~~~~~~~~~~ 112 (774)
.+++..|++...++....|.. .-.+...++.....|+++.+.+.|+++++..|+. .+...++......++
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~----~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~---- 168 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEP----VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE---- 168 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC----
Confidence 457888888888888888877 7777777788888888888888888888776654 455666666655443
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHH
Q 004093 113 EGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENS 192 (774)
Q Consensus 113 ~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~~~e~l~~~y~~fE~~ 192 (774)
.+.+...++.+++. +|.+..++..+..... +.++.+.+.+.+++..+.-..+-..+ ...
T Consensus 169 --~~~Al~~l~~l~~~---~P~~~~~l~ll~~~~~---------~~~d~~~a~~~l~~l~k~~~~~~~~~----~~l--- 227 (409)
T TIGR00540 169 --LHAARHGVDKLLEM---APRHKEVLKLAEEAYI---------RSGAWQALDDIIDNMAKAGLFDDEEF----ADL--- 227 (409)
T ss_pred --HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH---------HHhhHHHHHHHHHHHHHcCCCCHHHH----HHH---
Confidence 56777777755553 4555566666665543 35677777777777764311110000 000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHH
Q 004093 193 VSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRII 272 (774)
Q Consensus 193 ~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~ 272 (774)
+...|..++.-...+ ...
T Consensus 228 ---------------------------------------------------~~~a~~~~l~~~~~~-----------~~~ 245 (409)
T TIGR00540 228 ---------------------------------------------------EQKAEIGLLDEAMAD-----------EGI 245 (409)
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHh-----------cCH
Confidence 001222212100000 001
Q ss_pred HHHHHHHHhcC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHHhCCHHHHHHHHH
Q 004093 273 FTYEQCLMYLY----HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLR----YAFAELEESRGAIAAAKKLYE 344 (774)
Q Consensus 273 ~~yeraL~~~p----~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~----~~~a~l~e~~g~~e~A~~iye 344 (774)
..++++....| +++.+++.++..+...|+.++|.++++++++..|++.... ..+.. ...++.+.+.+.++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~--l~~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR--LKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhh--cCCCChHHHHHHHH
Confidence 23444444444 6889999999999999999999999999999999886532 12221 12356667777777
Q ss_pred HHhcCCCCCcH--HHHHHHHHHHHHhcCHHHHHHHHHH--HhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004093 345 SLLTDSVNTTA--LAHIQFIRFLRRTEGVEAARKYFLD--ARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLK 418 (774)
Q Consensus 345 k~l~~~~~~~~--~~~~~~a~~~~r~~~~~~Ar~if~~--al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~ 418 (774)
++++..|+ .+ .+...|+.++.+.|++++|++.|++ +++..+. ...+..++.+.... |+.+.|+++|++++.
T Consensus 324 ~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~-g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 324 KQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQA-GDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 77777665 34 4555666666677777777777763 4443332 34444555555554 666666666666654
No 62
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.29 E-value=6.8e-08 Score=111.32 Aligned_cols=118 Identities=9% Similarity=0.126 Sum_probs=90.0
Q ss_pred CChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHhhccCCcc
Q 004093 36 LPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEG 114 (774)
Q Consensus 36 ~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p-~~~lW~~Yl~~~~~~~~~~~~~~ 114 (774)
+++++|..++..++++.|.+ ...|..++..+...|+.+.+...+--|--..| +.++|....++.++.++
T Consensus 153 g~~eeA~~i~~EvIkqdp~~----~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~------ 222 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRN----PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN------ 222 (895)
T ss_pred CCHHHHHHHHHHHHHhCccc----hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc------
Confidence 68999999999999999999 99999999999999999888887776665554 56999999988877665
Q ss_pred HHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcc-c
Q 004093 115 QEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-P 175 (774)
Q Consensus 115 ~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~-P 175 (774)
++.++-+|.+|++.- |...+.-...+.. +.+.|....|...|++.+.. |
T Consensus 223 i~qA~~cy~rAI~~~---p~n~~~~~ers~L---------~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN---PSNWELIYERSSL---------YQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHHHHhcC---CcchHHHHHHHHH---------HHHhChHHHHHHHHHHHHhhCC
Confidence 678999999888764 3333322223333 23457788888889888864 5
No 63
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.26 E-value=2.7e-09 Score=120.10 Aligned_cols=217 Identities=12% Similarity=0.048 Sum_probs=164.2
Q ss_pred hHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 268 NKRIIFTYEQCLMYLYHYP-DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 268 ~~r~~~~yeraL~~~p~~~-~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
.+++...|+++++..|... .+...++.++...|+++.|++.+++.++..|++..++..++.++...|++++|.+.++++
T Consensus 134 ~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l 213 (409)
T TIGR00540 134 EARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNM 213 (409)
T ss_pred HHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4556677777777777764 566667788888888888888888888888888777777777777777777777766666
Q ss_pred hcCC--------------------------------------CC---CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 004093 347 LTDS--------------------------------------VN---TTALAHIQFIRFLRRTEGVEAARKYFLDARKSP 385 (774)
Q Consensus 347 l~~~--------------------------------------~~---~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~ 385 (774)
.+.. |. ....++..++..+...|+.+.|.++++++++..
T Consensus 214 ~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~ 293 (409)
T TIGR00540 214 AKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL 293 (409)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Confidence 6431 11 134677788888888999999999999999854
Q ss_pred CCCHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHhcCChhHHHHHHH--HHHhcCCch
Q 004093 386 NFTYH----VYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP--AYILEYADFLSRLNDDRNIRALFE--RALSSLPPE 457 (774)
Q Consensus 386 ~~~~~----~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~--~l~~~ya~~l~~~gd~~~Ar~lfE--raL~~~p~e 457 (774)
+.... .+..+..+ . .++.+.+.+.++++++..|+++ .+...++.++.+.|++++|+.+|| ++++..|
T Consensus 294 pd~~~~~~~~l~~~~~l--~-~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-- 368 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRL--K-PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-- 368 (409)
T ss_pred CCcccchhHHHHHhhhc--C-CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC--
Confidence 43332 23222222 2 3788899999999999999999 888999999999999999999999 5776766
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 004093 458 ESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEAL 490 (774)
Q Consensus 458 ~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~ 490 (774)
+.. .+..+.......|+.+.+.+++++.....
T Consensus 369 ~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 369 DAN-DLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 333 35577777778999999999999886554
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=1.1e-09 Score=117.78 Aligned_cols=183 Identities=14% Similarity=0.093 Sum_probs=141.6
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
....++..|++++..+|+++.+|+.++..+...|++++|.+.|+++++..|++...|+..+.++...|++++|.+.|+++
T Consensus 79 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~a 158 (296)
T PRK11189 79 LRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAF 158 (296)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-------H
Q 004093 347 LTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS-PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGL-------K 418 (774)
Q Consensus 347 l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~-~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al-------~ 418 (774)
++..|.+.. ...+..+....++.++|...|.+++.. ++..+. ++...+.. |+...+ ..++.+. +
T Consensus 159 l~~~P~~~~--~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~----~~~~~~~l-g~~~~~-~~~~~~~~~~~~~~~ 230 (296)
T PRK11189 159 YQDDPNDPY--RALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG----WNIVEFYL-GKISEE-TLMERLKAGATDNTE 230 (296)
T ss_pred HHhCCCCHH--HHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH----HHHHHHHc-cCCCHH-HHHHHHHhcCCCcHH
Confidence 999987431 122233444567899999999876643 222232 22222232 555433 2444444 3
Q ss_pred HcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCch
Q 004093 419 RFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPE 457 (774)
Q Consensus 419 ~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e 457 (774)
..|+..+.|...+..+...|++++|+.+|++++...|++
T Consensus 231 l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 231 LAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 344455678888899999999999999999999987643
No 65
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.24 E-value=3.6e-09 Score=118.55 Aligned_cols=218 Identities=11% Similarity=0.072 Sum_probs=173.5
Q ss_pred chHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYP-DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~-~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
..+++...|+++....|+.. ......+.++...|++++|.+.+++.++..|++.......+.++...|++++|..++.+
T Consensus 133 ~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~ 212 (398)
T PRK10747 133 DEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPS 212 (398)
T ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34566788888888888764 33344478888888888888888888888888888888888888888888888877766
Q ss_pred HhcCCCC-----------------------------------------CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 004093 346 LLTDSVN-----------------------------------------TTALAHIQFIRFLRRTEGVEAARKYFLDARKS 384 (774)
Q Consensus 346 ~l~~~~~-----------------------------------------~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~ 384 (774)
+.+.... +...++..|+..+...|+.++|.++++++++.
T Consensus 213 l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~ 292 (398)
T PRK10747 213 MAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR 292 (398)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6643221 12446677888888999999999999999996
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHH
Q 004093 385 PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWK 464 (774)
Q Consensus 385 ~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~ 464 (774)
+.. ......++.+ . .++.+++.+..+..++.+|+++.+...++.+....+++.+|+..||++++..|. ...+.
T Consensus 293 ~~~-~~l~~l~~~l--~-~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~---~~~~~ 365 (398)
T PRK10747 293 QYD-ERLVLLIPRL--K-TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD---AYDYA 365 (398)
T ss_pred CCC-HHHHHHHhhc--c-CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---HHHHH
Confidence 553 5544445544 2 389999999999999999999999999999999999999999999999998772 23345
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 465 RFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 465 ~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
.+.......|+.+.+..++++......
T Consensus 366 ~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 366 WLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 677778899999999999998877653
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=5.5e-08 Score=107.01 Aligned_cols=218 Identities=12% Similarity=0.101 Sum_probs=121.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q 004093 271 IIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS 350 (774)
Q Consensus 271 ~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~ 350 (774)
...+.+..+..+|.+.++....+-.+.+.|+..+--.+=.+.+...|++..-|+..|-++...|++.+||..|.|+...+
T Consensus 263 c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD 342 (611)
T KOG1173|consen 263 CLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD 342 (611)
T ss_pred HHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 34444555555666666555555455555555555555555555666666666666666666666666666666666666
Q ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHH
Q 004093 351 VNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS-PNF-TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL 428 (774)
Q Consensus 351 ~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~-~~~-~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~ 428 (774)
+. ...+|+.|+....-.+..+.|...|..|-+. +.| .+..|+. +||...++.+.|.+.|..|+.+.|.+|-+..
T Consensus 343 ~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg---mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~ 418 (611)
T KOG1173|consen 343 PT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG---MEYMRTNNLKLAEKFFKQALAIAPSDPLVLH 418 (611)
T ss_pred cc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH---HHHHHhccHHHHHHHHHHHHhcCCCcchhhh
Confidence 54 5566666666555566666666666666553 222 2333443 3444446666666666666666666665554
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCC---chh--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc
Q 004093 429 EYADFLSRLNDDRNIRALFERALSSLP---PEE--SIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 429 ~ya~~l~~~gd~~~Ar~lfEraL~~~p---~e~--~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk 492 (774)
..+-.-...+++.+|..+|+.++...+ ++. -..+|......-.+.+..+.+...+++++...|+
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 444444445566666666666663222 111 1233444444444455555555556666655553
No 67
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.22 E-value=4.3e-08 Score=112.94 Aligned_cols=323 Identities=13% Similarity=0.092 Sum_probs=205.2
Q ss_pred hccccCCCCCHHHHHHHHHHhcc-CChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004093 13 NITGVADKYNVETAEILANSALH-LPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL 91 (774)
Q Consensus 13 ~i~~~~nP~d~~~W~~l~~~~~~-~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p 91 (774)
-|. .+|.+..+|.-|+..++. ++++++...+--|-...|.+ .++|+.++++-...||+.+|+-+|.|+++..|
T Consensus 165 vIk--qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d----~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p 238 (895)
T KOG2076|consen 165 VIK--QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKD----YELWKRLADLSEQLGNINQARYCYSRAIQANP 238 (895)
T ss_pred HHH--hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 445 999999999999996655 59999999999999999999 99999999999999999999999999999876
Q ss_pred C-HHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCCh-----HhHHHHHHHHhhCCcCchHHHhHHHHHHH
Q 004093 92 Q-VPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSG-----PIWLEYITFLKSLPALNAQEESQRMIAIR 165 (774)
Q Consensus 92 ~-~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~-----~iW~~yi~fe~~~~~~~~~~~~~~~~~ar 165 (774)
+ .++-..++....+.++ ...+...|.+.++..+ |.+. .+|...=-|.. ...-+.|.
T Consensus 239 ~n~~~~~ers~L~~~~G~------~~~Am~~f~~l~~~~p--~~d~er~~d~i~~~~~~~~~----------~~~~e~a~ 300 (895)
T KOG2076|consen 239 SNWELIYERSSLYQKTGD------LKRAMETFLQLLQLDP--PVDIERIEDLIRRVAHYFIT----------HNERERAA 300 (895)
T ss_pred cchHHHHHHHHHHHHhCh------HHHHHHHHHHHHhhCC--chhHHHHHHHHHHHHHHHHH----------hhHHHHHH
Confidence 5 4555556666666554 5677888888887765 1111 23322222222 22337788
Q ss_pred HHHHHHHcc-------cCccH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHhhhccCCCC
Q 004093 166 KAYQRAVVT-------PTHHV-EQLWKDYENFENSVSRQLAKGLLSEYQSKY--TSAR-AVYRERKKYCEEIDWNMLAVP 234 (774)
Q Consensus 166 ~vYqral~~-------P~~~~-e~l~~~y~~fE~~~~~~lak~~l~e~~~~y--~~Ar-~i~k~~~~~~~~L~~~~~~~p 234 (774)
+.++.++.. |..++ ..++..+.+|...+... .......- +.+. ..+.++..... ....++
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i-----~~~~~r~~e~d~~e~~~~~~~~~~~~----~~~~~~ 371 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKI-----VDDRNRESEKDDSEWDTDERRREEPN----ALCEVG 371 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHH-----HHHhccccCCChhhhhhhhhcccccc----ccccCC
Confidence 888888752 22221 33444444443321111 10000000 0000 00000000000 011111
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHH-Hhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004093 235 PTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCL-MYL---YHYPDIWYDYATWNAKSGSIDAAIKVFQ 310 (774)
Q Consensus 235 P~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL-~~~---p~~~~iW~~ya~~l~~~g~~e~A~~v~e 310 (774)
..-+ ..+.+.+-.|..-..+ . .+. ..+...-+ ..+ -...+++++.+..+...|++.+|+.+|.
T Consensus 372 ~~~s----~~l~v~rl~icL~~L~-----~---~e~-~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~ 438 (895)
T KOG2076|consen 372 KELS----YDLRVIRLMICLVHLK-----E---REL-LEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS 438 (895)
T ss_pred CCCC----ccchhHhHhhhhhccc-----c---cch-HHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 1100 0011111111100000 0 000 11122222 222 3567899999999999999999999999
Q ss_pred HHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 004093 311 RALKALP-DSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDAR 382 (774)
Q Consensus 311 rAl~~~P-~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al 382 (774)
.++...+ .+..+|+..|..+..+|.++.|...|++++...|. ...+-+.++.++.+.|+.++|..++.+..
T Consensus 439 ~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 439 PITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9998766 45678999999999999999999999999999987 57889999999999999999999888865
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=5.7e-09 Score=112.21 Aligned_cols=216 Identities=17% Similarity=0.084 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004093 269 KRIIFTYEQCLMYLY----HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYE 344 (774)
Q Consensus 269 ~r~~~~yeraL~~~p----~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iye 344 (774)
+-.+..+.+.|...+ ..+..|+..+..+...|+.++|+..|+++++..|++...|+.++.++...|++++|...|+
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 122 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFD 122 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344566777886444 3467899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCH
Q 004093 345 SLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 424 (774)
Q Consensus 345 k~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~ 424 (774)
++++..|+ ...+|..++..+...|++++|.+.|+++++..+..... ..|..+. ...++.++|...|++++...+.
T Consensus 123 ~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~-~~~~~l~-~~~~~~~~A~~~l~~~~~~~~~-- 197 (296)
T PRK11189 123 SVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR-ALWLYLA-ESKLDPKQAKENLKQRYEKLDK-- 197 (296)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHH-HccCCHHHHHHHHHHHHhhCCc--
Confidence 99999997 57899999999999999999999999999876554421 1122221 2247899999999887765432
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCc-----hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 425 AYILEYADFLSRLNDDRNIRALFERALSSLPP-----EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 425 ~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~-----e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
..|. +......+|+...+ ..++.+++.+.. .+..+.|..........|+.+.+...++++.+..|
T Consensus 198 ~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 198 EQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred cccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2332 33444456666554 355555543221 13346788888888899999999999999999887
No 69
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.21 E-value=1.7e-10 Score=122.81 Aligned_cols=136 Identities=24% Similarity=0.312 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 004093 288 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESR-GAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 366 (774)
Q Consensus 288 iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~-g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~ 366 (774)
+|+.|+.|..+.+..+.||++|++|++..+....+|.++|.+|... ++.+.|++||+.+++..+. ...+|+.|++|+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-DPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 5777777777777777777777777644444566677777776663 4444577777777776665 4567777777777
Q ss_pred HhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHH
Q 004093 367 RTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRAL 446 (774)
Q Consensus 367 r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~l 446 (774)
..++.+.||.+|++++..-....+ ...+|..|++|+...|+.+.++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~--------------------------------~~~iw~~~i~fE~~~Gdl~~v~~v 129 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQ--------------------------------SKKIWKKFIEFESKYGDLESVRKV 129 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHH--------------------------------CHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhH--------------------------------HHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777776654222110 346888888888888888888888
Q ss_pred HHHHHhcCCc
Q 004093 447 FERALSSLPP 456 (774)
Q Consensus 447 fEraL~~~p~ 456 (774)
++|+.+.++.
T Consensus 130 ~~R~~~~~~~ 139 (280)
T PF05843_consen 130 EKRAEELFPE 139 (280)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHhhh
Confidence 8888888774
No 70
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.20 E-value=9e-08 Score=107.34 Aligned_cols=135 Identities=17% Similarity=0.048 Sum_probs=112.0
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHH
Q 004093 280 MYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 359 (774)
Q Consensus 280 ~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~ 359 (774)
...|+++.++..|+..+...|+.++|.++++++++ .+.+..+...|+.+ ..++.+++.+..++.++..|+ ...+++
T Consensus 257 ~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~-~~~l~l 332 (398)
T PRK10747 257 RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGD-TPLLWS 332 (398)
T ss_pred HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCC-CHHHHH
Confidence 34577899999999999999999999999999999 45566666666665 348889999999999999987 578889
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Q 004093 360 QFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF 420 (774)
Q Consensus 360 ~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~ 420 (774)
.+++++.+.+++++|+..|+++++..+. ...+..++.+.... |+.+.|..+|++++...
T Consensus 333 ~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~-g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 333 TLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRL-HKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999987655 56667777776664 89999999999988753
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=6e-09 Score=107.20 Aligned_cols=223 Identities=15% Similarity=0.127 Sum_probs=189.0
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
+..+++...++.+|...|+- +.+..++..+.+.++.+.|+.+|..++..+|.+..+....|.+++..++.++|.++|+.
T Consensus 237 gm~r~AekqlqssL~q~~~~-dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~ 315 (478)
T KOG1129|consen 237 GMPRRAEKQLQSSLTQFPHP-DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKL 315 (478)
T ss_pred cChhhhHHHHHHHhhcCCch-hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHH
Confidence 34567778899999988764 77888899999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcH-HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CC
Q 004093 346 LLTDSVNTTA-LAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF--MH 422 (774)
Q Consensus 346 ~l~~~~~~~~-~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~--p~ 422 (774)
+++..+.+.. .+-+.-.-| -.++.+-|...|.|.++.+-.+++.|.+.+..-..- +.++.+..-|++++..- |+
T Consensus 316 vlk~~~~nvEaiAcia~~yf--Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya-qQ~D~~L~sf~RAlstat~~~ 392 (478)
T KOG1129|consen 316 VLKLHPINVEAIACIAVGYF--YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA-QQIDLVLPSFQRALSTATQPG 392 (478)
T ss_pred HHhcCCccceeeeeeeeccc--cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh-cchhhhHHHHHHHHhhccCcc
Confidence 9998876311 111221122 257889999999999999988899999988865553 78999999999999863 33
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccccc
Q 004093 423 -EPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTG 494 (774)
Q Consensus 423 -~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk~~ 494 (774)
-.++|..........||++-|..+|.-||...+ ++.+-++....++.+-|+...+..++.-+..+.|.-.
T Consensus 393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~--~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA--QHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred hhhhhhhccceeEEeccchHHHHHHHHHHhccCc--chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 358999998888999999999999999999877 6788888999999999999999999999999998543
No 72
>PLN02789 farnesyltranstransferase
Probab=99.06 E-value=1.3e-07 Score=102.11 Aligned_cols=188 Identities=9% Similarity=-0.018 Sum_probs=157.5
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH--HHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG-SIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAI--AAAKKLY 343 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g-~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~--e~A~~iy 343 (774)
...++..++.++|+.+|.+..+|...+.++...+ ++++++..+++++..+|++..+|...+.+....+.. +++..++
T Consensus 52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHH
Confidence 4578899999999999999999999999999988 579999999999999999999999888888777763 6788999
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--CCC----HHHHHHHHHHHH
Q 004093 344 ESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ--DKD----PKLAHNVFEAGL 417 (774)
Q Consensus 344 ek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~--~gd----~~~A~~ife~al 417 (774)
+++++.++. +..+|...+......+.++++.+.+.++++....+..+|.....+.... .+. .+.+......++
T Consensus 132 ~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI 210 (320)
T PLN02789 132 RKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAI 210 (320)
T ss_pred HHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHH
Confidence 999999987 6789999999999999999999999999997767788888766543332 022 356788888999
Q ss_pred HHcCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCC
Q 004093 418 KRFMHEPAYILEYADFLSR----LNDDRNIRALFERALSSLP 455 (774)
Q Consensus 418 ~~~p~~~~l~~~ya~~l~~----~gd~~~Ar~lfEraL~~~p 455 (774)
...|++...|.....++.. ++...+|...+++++...+
T Consensus 211 ~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 211 LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 9999999999777777766 3445678888899887554
No 73
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=8e-07 Score=94.96 Aligned_cols=203 Identities=14% Similarity=0.117 Sum_probs=169.9
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
+..+.+...|+.+|..+....+..++.+.-....|+.++|++.|-+.-...-++..+.+..+.+++...+...|.++|-+
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 56778889999999998888899999999999999999999999999888889999999999999999999999999999
Q ss_pred HhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC
Q 004093 346 LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHV--YVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE 423 (774)
Q Consensus 346 ~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~--~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~ 423 (774)
+...-|+ .+.+...++.++-+.|+...|.+.+-.....-+|+.++ |+..-.++ ..=.++|+..||++--..|+.
T Consensus 584 ~~slip~-dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid---tqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 584 ANSLIPN-DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID---TQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred hcccCCC-CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh---hHHHHHHHHHHHHHHhcCccH
Confidence 9988887 46788999999999999999999887777766776655 44433333 234688999999999999988
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhC
Q 004093 424 PAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYG 474 (774)
Q Consensus 424 ~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~G 474 (774)
..+-+..+.++.+.|++.+|..+|.....++| ...+-....+.+.-..|
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp--edldclkflvri~~dlg 708 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP--EDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc--cchHHHHHHHHHhcccc
Confidence 77777888899999999999999999999999 33455555555543344
No 74
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=7.4e-09 Score=114.21 Aligned_cols=220 Identities=15% Similarity=0.150 Sum_probs=172.4
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 004093 268 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 347 (774)
Q Consensus 268 ~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l 347 (774)
.-.+..+||.+++.+|.+.++|..++....++++-..|+..++|+++..|++..+...+|--+...|.-..|...+.+.|
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi 380 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWI 380 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHhc---------CHHHHHHHHHHHh-cCCC-CCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 004093 348 TDSVNTTALAHIQFIRFLRRTE---------GVEAARKYFLDAR-KSPN-FTYHVYVAYALMAFCQDKDPKLAHNVFEAG 416 (774)
Q Consensus 348 ~~~~~~~~~~~~~~a~~~~r~~---------~~~~Ar~if~~al-~~~~-~~~~~~i~~A~lE~~~~gd~~~A~~ife~a 416 (774)
...|. ..|+.-+.-..+.+ .+....++|-.|. ..+. ..++++..++.+ |+..|++++|...|+.|
T Consensus 381 ~~~p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL-y~ls~efdraiDcf~~A 456 (579)
T KOG1125|consen 381 RNKPK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL-YNLSGEFDRAVDCFEAA 456 (579)
T ss_pred HhCcc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH-HhcchHHHHHHHHHHHH
Confidence 87653 23322221111111 1233344454444 4442 568899888877 45569999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc
Q 004093 417 LKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRT 493 (774)
Q Consensus 417 l~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk~ 493 (774)
|...|++..+|..++--+.+-+..++|...|.|||+.-| .-+.+|..+.-=-...|.+..+.+.+=+++..-++.
T Consensus 457 L~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP--~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 457 LQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP--GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred HhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC--CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999877 223333333323336788888888888888887763
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.02 E-value=3.6e-06 Score=95.97 Aligned_cols=422 Identities=15% Similarity=0.095 Sum_probs=245.1
Q ss_pred CCHHHHHHHHHHh-ccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CC-HHHH
Q 004093 21 YNVETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC--LQ-VPLW 96 (774)
Q Consensus 21 ~d~~~W~~l~~~~-~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~--p~-~~lW 96 (774)
+|...|..+.-.+ ..+.+..+.+.||+++..-=.. .+.|..++-.....|....|..+.+.++... |+ +...
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~----~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGE----HERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh----HHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 5566666654433 3357888899999999877777 8999999999999999999999999999876 43 2332
Q ss_pred -HHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHH-HHHHh-hCCcCchHHHhHHHHHHHHHHHHHHc
Q 004093 97 -RCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEY-ITFLK-SLPALNAQEESQRMIAIRKAYQRAVV 173 (774)
Q Consensus 97 -~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~y-i~fe~-~~~~~~~~~~~~~~~~ar~vYqral~ 173 (774)
+.+--+.++.+.. .+.++-+.++..-.....+. . .+..+... +.+-. ...++...+..-.-.++...|++|++
T Consensus 397 Lmasklc~e~l~~~--eegldYA~kai~~~~~~~~~-l-~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 397 LMASKLCIERLKLV--EEGLDYAQKAISLLGGQRSH-L-KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred HHHHHHHHhchhhh--hhHHHHHHHHHHHhhhhhhh-h-hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 3333333322211 12233333333211111110 0 01111111 11100 00111112222233567788888888
Q ss_pred ccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHH
Q 004093 174 TPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLT 253 (774)
Q Consensus 174 ~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~ 253 (774)
...++...+| |..++..+.+ +...|....++ .|. +-+.. +...|.-...
T Consensus 473 ~d~~dp~~if--~lalq~A~~R------------~l~sAl~~~~e------aL~-----l~~~~------~~~~whLLAL 521 (799)
T KOG4162|consen 473 FDPTDPLVIF--YLALQYAEQR------------QLTSALDYARE------ALA-----LNRGD------SAKAWHLLAL 521 (799)
T ss_pred cCCCCchHHH--HHHHHHHHHH------------hHHHHHHHHHH------HHH-----hcCCc------cHHHHHHHHH
Confidence 7655554444 3333332211 12222222221 111 11111 1224543222
Q ss_pred HHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHH
Q 004093 254 FEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFA--ELEE 331 (774)
Q Consensus 254 ~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a--~l~e 331 (774)
.--.. ...+.+..+.+-++...++|..+-.--+.+....++.++|...+..-+...-....+....+ ..+.
T Consensus 522 vlSa~-------kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~ 594 (799)
T KOG4162|consen 522 VLSAQ-------KRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLR 594 (799)
T ss_pred HHhhh-------hhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhh
Confidence 11110 22344556667777777776666666666666667777777766666554221111111111 1111
Q ss_pred -------HhCCHHHHHHHHHHHhcC--------C-----C--------CC----cHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004093 332 -------SRGAIAAAKKLYESLLTD--------S-----V--------NT----TALAHIQFIRFLRRTEGVEAARKYFL 379 (774)
Q Consensus 332 -------~~g~~e~A~~iyek~l~~--------~-----~--------~~----~~~~~~~~a~~~~r~~~~~~Ar~if~ 379 (774)
..++..++.+.+.++... . | .. .-.+|...+....+.++.+.|+..+.
T Consensus 595 lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~ 674 (799)
T KOG4162|consen 595 LKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLL 674 (799)
T ss_pred hhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 011112222222222210 0 1 10 12478888888888999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHH--HHHHHHhcCCch
Q 004093 380 DARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRA--LFERALSSLPPE 457 (774)
Q Consensus 380 ~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~--lfEraL~~~p~e 457 (774)
+|.+..+....+|...+.+... .|...+|...|..|+..+|+.+......+.++.+.|+...|-. +...+++.-|
T Consensus 675 Ea~~~~~l~~~~~~~~G~~~~~-~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-- 751 (799)
T KOG4162|consen 675 EASKIDPLSASVYYLRGLLLEV-KGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-- 751 (799)
T ss_pred HHHhcchhhHHHHHHhhHHHHH-HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC--
Confidence 9998877767777777665444 4899999999999999999999999999999999998766555 9999999877
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 458 ESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 458 ~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
...+.|......-...||.+++...+.-+.+.-+
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 5678999998888899999998888888887764
No 76
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=5.9e-07 Score=99.06 Aligned_cols=185 Identities=13% Similarity=0.094 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 004093 269 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 348 (774)
Q Consensus 269 ~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~ 348 (774)
.+++.+|-+|...+|.+...|+.|+.-+.-.+.-++|...|-+|-+..|.+..-.+..+.-+.+.++++-|.+.|..++.
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 45677899999999999999999999999999999999999999999998866555556666678899999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC-----CCC-CH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 004093 349 DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS-----PNF-TY-HVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM 421 (774)
Q Consensus 349 ~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~-----~~~-~~-~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p 421 (774)
+.|.+ +.+....+-.....+.+.+|..+|+.++.. +.. .| .++.+++....++ +.++.|+..|+++|...|
T Consensus 409 i~P~D-plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl-~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 409 IAPSD-PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL-NKYEEAIDYYQKALLLSP 486 (611)
T ss_pred cCCCc-chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH-hhHHHHHHHHHHHHHcCC
Confidence 99984 456555566666678899999999998831 111 23 4577777776665 899999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 422 HEPAYILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 422 ~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
.++..+-..+-.+..+|+++.|...|.++|-.-|
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 9999988888788889999999999999998877
No 77
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.98 E-value=6.6e-08 Score=100.13 Aligned_cols=191 Identities=16% Similarity=0.032 Sum_probs=128.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcH--HH
Q 004093 283 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE---MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTA--LA 357 (774)
Q Consensus 283 p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~---~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~--~~ 357 (774)
....+.++..+..+...|++++|...|++++...|.+. ..|+..+..+...|++++|...|+++++..|+... .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 45678889999999999999999999999999999775 56788899999999999999999999998886332 24
Q ss_pred HHHHHHHHHHh--------cCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHH
Q 004093 358 HIQFIRFLRRT--------EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILE 429 (774)
Q Consensus 358 ~~~~a~~~~r~--------~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ 429 (774)
+...+..+... ++.+.|...|++++...+.+...+.....+.... . .. ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~-~-------~~----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR-N-------RL----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-H-------HH----------HHHHHH
Confidence 55555544433 6677888888888775444333332221111000 0 00 011124
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 430 YADFLSRLNDDRNIRALFERALSSLPPE-ESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 430 ya~~l~~~gd~~~Ar~lfEraL~~~p~e-~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
.++++...|++.+|...|++++..+|.. .....|..........|+.+.+.++.++....+|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5566677777777777777777766632 2345666666666677777777777777666665
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=0.00017 Score=80.38 Aligned_cols=398 Identities=15% Similarity=0.142 Sum_probs=232.9
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--cCCCHHHHHHHH
Q 004093 23 VETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLL--ICLQVPLWRCYI 100 (774)
Q Consensus 23 ~~~W~~l~~~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~--~~p~~~lW~~Yl 100 (774)
..+|..+-....++++++|.....+++...|+. ......-+-..+..+.|+.|..+.++-.. ......+=+.|+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd----~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDD----EDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCc----HhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHH
Confidence 467777777777889999999999999999999 88887777778888999999987766443 222333556677
Q ss_pred HHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCccHH
Q 004093 101 RFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVE 180 (774)
Q Consensus 101 ~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~~~e 180 (774)
.|-. |. .+.+-..+. |++.....+-.-.++.+-+ .+++++|.+||+..+.......+
T Consensus 89 ~Yrl--nk------~Dealk~~~------~~~~~~~~ll~L~AQvlYr---------l~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 89 EYRL--NK------LDEALKTLK------GLDRLDDKLLELRAQVLYR---------LERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred HHHc--cc------HHHHHHHHh------cccccchHHHHHHHHHHHH---------HhhHHHHHHHHHHHHhcCCchHH
Confidence 6642 22 344555554 5666555566666666543 57899999999999865332211
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHH-HHHHHhcCC
Q 004093 181 QLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKR-LLTFEKGNP 259 (774)
Q Consensus 181 ~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~-yi~~Ek~n~ 259 (774)
..- ...+ + |....... +..+.+ ..+ |.++. -.++.. .+..+.
T Consensus 146 ~~~------r~nl---~--------------a~~a~l~~-~~~q~v----~~v-~e~sy-----el~yN~Ac~~i~~--- 188 (652)
T KOG2376|consen 146 EER------RANL---L--------------AVAAALQV-QLLQSV----PEV-PEDSY-----ELLYNTACILIEN--- 188 (652)
T ss_pred HHH------HHHH---H--------------HHHHhhhH-HHHHhc----cCC-CcchH-----HHHHHHHHHHHhc---
Confidence 110 0000 0 00000000 001111 112 22221 112211 111111
Q ss_pred CCCCchhchHHHHHHHHHHHHhcC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHH
Q 004093 260 QRIDTASSNKRIIFTYEQCLMYLY---------------HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE-MLR 323 (774)
Q Consensus 260 ~~~d~~~~~~r~~~~yeraL~~~p---------------~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~-~l~ 323 (774)
+....++..++.++..+. .-..|..+++-.+...|+.++|.++|...++.+|.+. .+.
T Consensus 189 ------gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~A 262 (652)
T KOG2376|consen 189 ------GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLA 262 (652)
T ss_pred ------ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHH
Confidence 233445556666643321 1124777888888899999999999999998876443 111
Q ss_pred H----------------------------HHHHHHHH--------------------hCCHHHHHHHHHHHhcCCCCCcH
Q 004093 324 Y----------------------------AFAELEES--------------------RGAIAAAKKLYESLLTDSVNTTA 355 (774)
Q Consensus 324 ~----------------------------~~a~l~e~--------------------~g~~e~A~~iyek~l~~~~~~~~ 355 (774)
+ .++++... .+.-+.++++-.+.-...|. .
T Consensus 263 v~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~--~ 340 (652)
T KOG2376|consen 263 VAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPE--S 340 (652)
T ss_pred HHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCch--H
Confidence 0 11111110 00111111111111111111 1
Q ss_pred HHHHHHHHHHHHh-cCHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-------HcCCCHHH
Q 004093 356 LAHIQFIRFLRRT-EGVEAARKYFLDARKSPNFT-YHVYVAYALMAFCQDKDPKLAHNVFEAGLK-------RFMHEPAY 426 (774)
Q Consensus 356 ~~~~~~a~~~~r~-~~~~~Ar~if~~al~~~~~~-~~~~i~~A~lE~~~~gd~~~A~~ife~al~-------~~p~~~~l 426 (774)
.+-+........+ .....|..++....+..++. ..+.+..|++... +|++..|.+|+...+. ...+.|.+
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is-~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~ 419 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS-QGNPEVALEILSLFLESWKSSILEAKHLPGT 419 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhhhhhhhhhhccChhH
Confidence 1111122222222 23666777777766655553 5566767777666 4999999999984332 23456777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcC----C-chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc
Q 004093 427 ILEYADFLSRLNDDRNIRALFERALSSL----P-PEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRT 493 (774)
Q Consensus 427 ~~~ya~~l~~~gd~~~Ar~lfEraL~~~----p-~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk~ 493 (774)
+-....++.+.++.+.|-+++..|+... + ......+|...+.|+..+|+.+....+++...+.+|+.
T Consensus 420 V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d 491 (652)
T KOG2376|consen 420 VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND 491 (652)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch
Confidence 7666667788888899999999999732 1 22345677788999999999999999999999988854
No 79
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=2.8e-07 Score=92.59 Aligned_cols=179 Identities=21% Similarity=0.196 Sum_probs=147.3
Q ss_pred HHHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 004093 286 PDIWYDYATW---NAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 362 (774)
Q Consensus 286 ~~iW~~ya~~---l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a 362 (774)
+++|.-|=+. ....++.+-|...+.+....+|++...-...|.+++..|++++|.++|+.+++.+|. +.-++..-.
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKl 127 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKL 127 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHH
Confidence 4556555333 334678889999999999999999998889999999999999999999999999986 345666666
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC---
Q 004093 363 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLND--- 439 (774)
Q Consensus 363 ~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd--- 439 (774)
.+...+|.--.|++-+..-++.-....++|...+.+.... |++++|.=.||..+-..|.++.++..|++.+.-+|.
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~-~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE-GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 6677788888888888888887667799999999986665 999999999999999999999999999999988774
Q ss_pred hhHHHHHHHHHHhcCCchhHHHHHHHHH
Q 004093 440 DRNIRALFERALSSLPPEESIEVWKRFT 467 (774)
Q Consensus 440 ~~~Ar~lfEraL~~~p~e~~~~lw~~~~ 467 (774)
..-+|.+|+++|+..+ ++...++--|+
T Consensus 207 ~~~arkyy~~alkl~~-~~~ral~GI~l 233 (289)
T KOG3060|consen 207 LELARKYYERALKLNP-KNLRALFGIYL 233 (289)
T ss_pred HHHHHHHHHHHHHhCh-HhHHHHHHHHH
Confidence 5679999999999887 45555554443
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.93 E-value=2e-05 Score=88.56 Aligned_cols=398 Identities=12% Similarity=0.092 Sum_probs=230.4
Q ss_pred CCCCHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCHHHHH
Q 004093 19 DKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC-LQVPLWR 97 (774)
Q Consensus 19 nP~d~~~W~~l~~~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~-p~~~lW~ 97 (774)
.|.........+..++.+.+..-..+.+.+|+.||.- ++-..+-+-....+|+-++|-....+++..- .+.-.|.
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eH----geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwH 79 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEH----GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWH 79 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCcc----chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHH
Confidence 4555667778888888889999999999999999998 8888877777788899999999999999874 5678999
Q ss_pred HHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcc-cC
Q 004093 98 CYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PT 176 (774)
Q Consensus 98 ~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~-P~ 176 (774)
.|.-+.+...+ ...+.++|..||. .+++..+||.+..-.-. +.++++-....-.+.++. |.
T Consensus 80 v~gl~~R~dK~------Y~eaiKcy~nAl~---~~~dN~qilrDlslLQ~---------QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 80 VLGLLQRSDKK------YDEAIKCYRNALK---IEKDNLQILRDLSLLQI---------QMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred HHHHHHhhhhh------HHHHHHHHHHHHh---cCCCcHHHHHHHHHHHH---------HHHhhhhHHHHHHHHHHhhhh
Confidence 99988887665 4689999997775 56788899999866532 234555554444555543 32
Q ss_pred ccHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH---------HHHHH-HHHHHHHHHHHhhhc-cCCCCCCCCchhHHH
Q 004093 177 HHVEQLWKDYENFENSV-SRQLAKGLLSEYQSKY---------TSARA-VYRERKKYCEEIDWN-MLAVPPTGSYKEEQQ 244 (774)
Q Consensus 177 ~~~e~l~~~y~~fE~~~-~~~lak~~l~e~~~~y---------~~Ar~-i~k~~~~~~~~L~~~-~~~~pP~~~~~~~~q 244 (774)
. ...|..|+--...+ +...+-.+++++.+.- ..... +|+.....+.+..+. ..++.. .+
T Consensus 142 ~--ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~-------~e 212 (700)
T KOG1156|consen 142 Q--RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD-------NE 212 (700)
T ss_pred h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh-------hh
Confidence 2 23454443211110 2222333333322111 11100 111111111000000 000000 00
Q ss_pred HHHHHHHHHHHhcCCCCC-CchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHH-
Q 004093 245 WIAWKRLLTFEKGNPQRI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAI-KVFQRALKALPDSEM- 321 (774)
Q Consensus 245 ~~lW~~yi~~Ek~n~~~~-d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~-~v~erAl~~~P~~~~- 321 (774)
-.+-.+ +.++... ..+ -.....+.+..+|...+..+|++.+-+..+-..+..-.+.-++. .+|...-+..|....
T Consensus 213 ~~i~Dk-la~~e~k-a~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p 290 (700)
T KOG1156|consen 213 KQIVDK-LAFEETK-ADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP 290 (700)
T ss_pred hHHHHH-HHHhhhH-HHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc
Confidence 000000 0111100 000 01134456677787788888877777777666664222323333 556655544443211
Q ss_pred ------------HHH---HHHHHHHHhCC---HHHHHH---------HHHHHhc-------CC---C--------CCcHH
Q 004093 322 ------------LRY---AFAELEESRGA---IAAAKK---------LYESLLT-------DS---V--------NTTAL 356 (774)
Q Consensus 322 ------------l~~---~~a~l~e~~g~---~e~A~~---------iyek~l~-------~~---~--------~~~~~ 356 (774)
+-. .|..-+.+.|- +...+. +.++++. -. . ...+.
T Consensus 291 ~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttl 370 (700)
T KOG1156|consen 291 RRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTL 370 (700)
T ss_pred hhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHH
Confidence 111 11111111110 111122 2222221 10 0 11357
Q ss_pred HHHHHH--HHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004093 357 AHIQFI--RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFL 434 (774)
Q Consensus 357 ~~~~~a--~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l 434 (774)
+|..|- +-.-+.|+++.|......|+...+.-.+.|+.-|.+.-+ .|+++.|..+++++.+.+..|.-+--.++.+.
T Consensus 371 lWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH-~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 371 LWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKH-AGLLDEAAAWLDEAQELDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHh-cCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 887664 455578999999999999999988889999999998555 59999999999999887654433333899999
Q ss_pred HhcCChhHHHHHHHHH
Q 004093 435 SRLNDDRNIRALFERA 450 (774)
Q Consensus 435 ~~~gd~~~Ar~lfEra 450 (774)
++.++.++|-.+.-+-
T Consensus 450 LrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKF 465 (700)
T ss_pred HHccccHHHHHHHHHh
Confidence 9999988887665443
No 81
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.92 E-value=2.7e-08 Score=95.05 Aligned_cols=121 Identities=17% Similarity=-0.044 Sum_probs=105.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 004093 273 FTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 273 ~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~ 352 (774)
..|++++..+|++ |+..+..+...|++++|...|++++...|.+...|+.++.++...|++++|...|++++...|.
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 5799999988864 7778889999999999999999999999999999999999999999999999999999999887
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004093 353 TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYAL 397 (774)
Q Consensus 353 ~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~ 397 (774)
...+|..++..+.+.|++++|+..|.++++..+.....|...+.
T Consensus 91 -~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 91 -HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred -CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 57888999988888999999999999998877666666655444
No 82
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.90 E-value=1.3e-07 Score=111.70 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=107.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC
Q 004093 294 TWNAKSGSIDAAIKVFQRALK---ALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEG 370 (774)
Q Consensus 294 ~~l~~~g~~e~A~~v~erAl~---~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~ 370 (774)
+.+..++....+.+.+-+++. ..|.+...++.+|.++.+.|.+++|..+++.+++..|+ +..+++.++..+.+.+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~ 135 (694)
T PRK15179 57 QVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQG 135 (694)
T ss_pred HHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhcc
Confidence 344445544444444444433 35666777777777777777777777777777777775 56677777777777777
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004093 371 VEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERA 450 (774)
Q Consensus 371 ~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEra 450 (774)
+++|+..+++++...+.+.......|...-.. |.+++|..+|++++...|+++..+..|+..+...|+.+.|...|++|
T Consensus 136 ~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~-g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 136 IEAGRAEIELYFSGGSSSAREILLEAKSWDEI-GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh-cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777776666666666666554443 77777777777777766777777777777777777777777777777
Q ss_pred HhcCC
Q 004093 451 LSSLP 455 (774)
Q Consensus 451 L~~~p 455 (774)
+....
T Consensus 215 ~~~~~ 219 (694)
T PRK15179 215 LDAIG 219 (694)
T ss_pred HHhhC
Confidence 76544
No 83
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.90 E-value=4.2e-07 Score=94.03 Aligned_cols=221 Identities=17% Similarity=0.122 Sum_probs=180.6
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhCCHHHHHHH
Q 004093 268 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS-----EMLRYAFAELEESRGAIAAAKKL 342 (774)
Q Consensus 268 ~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~-----~~l~~~~a~l~e~~g~~e~A~~i 342 (774)
..+++..|-..++..|...+..+.++.++-+.|..+.|+.+-+..+.. |+- ....+.++.=+...|-+|+|..+
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~ 129 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDI 129 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 356778899999999999999999999999999999999998877753 322 22345777778888999999999
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 004093 343 YESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT-----YHVYVAYALMAFCQDKDPKLAHNVFEAGL 417 (774)
Q Consensus 343 yek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~-----~~~~i~~A~lE~~~~gd~~~A~~ife~al 417 (774)
|..+++.... ...+..++..++-...++++|.++-.+..+..+.. .+.|..+|..... ..+.++|+..+++|+
T Consensus 130 f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~-~~~~d~A~~~l~kAl 207 (389)
T COG2956 130 FNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA-SSDVDRARELLKKAL 207 (389)
T ss_pred HHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHH
Confidence 9999986544 34678888899999999999999999888765543 4556666665433 478999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc
Q 004093 418 KRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 418 ~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk 492 (774)
+.+|+....-+..++.+...|++..|...+++++++.| +-..++......--...|+.+.....+.|+.+.++.
T Consensus 208 qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~-~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 208 QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNP-EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 99999988888899999999999999999999999887 344555555555555789999999999999998873
No 84
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.86 E-value=6.5e-08 Score=97.53 Aligned_cols=118 Identities=11% Similarity=0.086 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhCC--HHHHHHHHH
Q 004093 268 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELE-ESRGA--IAAAKKLYE 344 (774)
Q Consensus 268 ~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~-e~~g~--~e~A~~iye 344 (774)
.+..+..+++++..+|.+.+.|+.++..+...|++++|...|++|++..|++..++..+|..+ ...|+ .++|+.+|+
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~ 134 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMID 134 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 355678899999999999999999999999999999999999999999999999999999864 66676 589999999
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC
Q 004093 345 SLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN 386 (774)
Q Consensus 345 k~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~ 386 (774)
++++.+|+ ...++..++..+.+.|++++|...|+++++..+
T Consensus 135 ~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 135 KALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999997 578888888888899999999999999987533
No 85
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=9.3e-06 Score=84.32 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Q 004093 288 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR 367 (774)
Q Consensus 288 iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r 367 (774)
++..+|.-+....+.+.|+..+++|++.+|++...-+.+++++...|+++.|.+.++.+++.++.-.+.+--.+...+..
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555555555555555555555555555555555555555555544333444444444444
Q ss_pred hcCHHHHHHHHHHHhcC
Q 004093 368 TEGVEAARKYFLDARKS 384 (774)
Q Consensus 368 ~~~~~~Ar~if~~al~~ 384 (774)
.|+.++.+..+.++.+.
T Consensus 262 lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 262 LGKPAEGLNFLRRAMET 278 (389)
T ss_pred hCCHHHHHHHHHHHHHc
Confidence 55555555554444443
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.85 E-value=4.7e-07 Score=99.68 Aligned_cols=204 Identities=14% Similarity=-0.046 Sum_probs=123.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHH
Q 004093 282 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAH 358 (774)
Q Consensus 282 ~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~---~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~ 358 (774)
+|+++-.|...+.++...++.+.+.+.+.++....|.+ ....+..+......|++++|..++++++...|.+ ..++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRD-LLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHH
Confidence 46677777777777777777777777777777666533 3344455566666777777777777777776653 3333
Q ss_pred H---HHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004093 359 I---QFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLS 435 (774)
Q Consensus 359 ~---~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~ 435 (774)
. .+.......+..+.+.+.+.......+..+..+...+.+... .|+++.|...++++++..|+++..+..++..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~-~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~ 159 (355)
T cd05804 81 KLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE-AGQYDRAEEAARRALELNPDDAWAVHAVAHVLE 159 (355)
T ss_pred HHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 3 111111123344444444444323333334444444444344 377777777777777777777766777777777
Q ss_pred hcCChhHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004093 436 RLNDDRNIRALFERALSSLPP--EESIEVWKRFTQFEQMYGDLDSTLKVEQRRK 487 (774)
Q Consensus 436 ~~gd~~~Ar~lfEraL~~~p~--e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~ 487 (774)
..|++++|..++++++...+. ......|..+..+....|+.+.+..+++++.
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 777777777777777775542 1223345555666667777777777777664
No 87
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.84 E-value=1.4e-07 Score=111.33 Aligned_cols=141 Identities=16% Similarity=0.054 Sum_probs=122.4
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHH
Q 004093 281 YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQ 360 (774)
Q Consensus 281 ~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~ 360 (774)
..|+..+..+.++....+.|.+++|..+++++++..|++...+..++..+.+.+.+++|...+++++...|+ ...+...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 457778899999999999999999999999999999999999999999999999999999999999998887 5778888
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC
Q 004093 361 FIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE 423 (774)
Q Consensus 361 ~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~ 423 (774)
++..+...|.+++|..+|++++...+...++++.++...... |+.+.|...|+++++.+.+-
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~-G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRR-GALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhCcc
Confidence 888888999999999999999975556688999988877665 89999999999999876553
No 88
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.5e-06 Score=88.89 Aligned_cols=186 Identities=15% Similarity=0.031 Sum_probs=147.0
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 004093 268 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 347 (774)
Q Consensus 268 ~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l 347 (774)
.+|+..+-++|+..++.+...++.-+.++...++.++|.-.|..|+..-|-....+..+...|...|.+.+|.-.-..++
T Consensus 316 ~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~ 395 (564)
T KOG1174|consen 316 FERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTI 395 (564)
T ss_pred HHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 46677788889999998889999999999999999999999999998888888888777777888888888777666666
Q ss_pred cCCCCCcHHHHHHHH-HHH-HHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHH
Q 004093 348 TDSVNTTALAHIQFI-RFL-RRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPA 425 (774)
Q Consensus 348 ~~~~~~~~~~~~~~a-~~~-~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~ 425 (774)
+..+. .+.....++ ... .---.-++|.+.++++++..+....+.+..|.+.... |..+.+++++|+.++.+++. .
T Consensus 396 ~~~~~-sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~E-g~~~D~i~LLe~~L~~~~D~-~ 472 (564)
T KOG1174|consen 396 RLFQN-SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVE-GPTKDIIKLLEKHLIIFPDV-N 472 (564)
T ss_pred HHhhc-chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhh-CccchHHHHHHHHHhhcccc-H
Confidence 65554 233322221 111 0112347899999999998777777777778775554 88889999999999999875 6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCc
Q 004093 426 YILEYADFLSRLNDDRNIRALFERALSSLPP 456 (774)
Q Consensus 426 l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~ 456 (774)
+....++++...|.+.+|...|..||...|.
T Consensus 473 LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 473 LHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 7889999999999999999999999999884
No 89
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.83 E-value=9.8e-08 Score=91.21 Aligned_cols=124 Identities=14% Similarity=0.076 Sum_probs=105.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 004093 306 IKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP 385 (774)
Q Consensus 306 ~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~ 385 (774)
...|+++++..|++ ++.++......|++++|...|++++...|. ...+|..++..+.+.|++++|...|++++...
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 46889999998875 556788888899999999999999999887 57899999999999999999999999999987
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004093 386 NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFL 434 (774)
Q Consensus 386 ~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l 434 (774)
+.....+..++...... |+++.|+..|+++++..|+++..+...+...
T Consensus 89 p~~~~a~~~lg~~l~~~-g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMM-GEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 77788888888876665 9999999999999999999988886555443
No 90
>PLN02789 farnesyltranstransferase
Probab=98.82 E-value=4.1e-07 Score=98.30 Aligned_cols=174 Identities=7% Similarity=-0.039 Sum_probs=141.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC--H
Q 004093 295 WNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG-AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEG--V 371 (774)
Q Consensus 295 ~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g-~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~--~ 371 (774)
++...+..++|+.++.++|..+|.+..+|...+.++..++ +++++...+++++..+|. ...+|.....+..+.+. .
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 3445667899999999999999999999999999988887 679999999999999987 56789888777776665 3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCh----hHHH
Q 004093 372 EAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRL---NDD----RNIR 444 (774)
Q Consensus 372 ~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~---gd~----~~Ar 444 (774)
+++...++++++..+.+.++|...+.+.... |+++.|.+.++++|+..+.+...|......+.+. +.. +...
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l-~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTL-GGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 6789999999998888899999987776665 8999999999999999999999887666555544 333 4678
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 004093 445 ALFERALSSLPPEESIEVWKRFTQFEQM 472 (774)
Q Consensus 445 ~lfEraL~~~p~e~~~~lw~~~~~fE~~ 472 (774)
.+..++|...| +....|....-+-..
T Consensus 204 ~y~~~aI~~~P--~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 204 KYTIDAILANP--RNESPWRYLRGLFKD 229 (320)
T ss_pred HHHHHHHHhCC--CCcCHHHHHHHHHhc
Confidence 88889999888 456677655444333
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.81 E-value=7.9e-06 Score=85.16 Aligned_cols=72 Identities=19% Similarity=0.145 Sum_probs=62.9
Q ss_pred CCCCCHHHHHHHHHHh-ccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCH
Q 004093 18 ADKYNVETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQV 93 (774)
Q Consensus 18 ~nP~d~~~W~~l~~~~-~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~~ 93 (774)
.+|-+++..+.+...+ -.+.+..|..-|-.|++.+|++ +...+.-+..++.+|.-..|..=++|.|...|+.
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~----Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF 105 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN----YQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF 105 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh----HHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH
Confidence 6888899999998854 4568999999999999999999 9888888888999998888888899998888874
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.78 E-value=8.3e-06 Score=94.98 Aligned_cols=406 Identities=12% Similarity=0.074 Sum_probs=246.5
Q ss_pred CCCCCHHHHHHHHHHhccC-ChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---CH
Q 004093 18 ADKYNVETAEILANSALHL-PVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL---QV 93 (774)
Q Consensus 18 ~nP~d~~~W~~l~~~~~~~-~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p---~~ 93 (774)
.+|+--.+|--++..++.- +..+|+.+|.+|.+++|+. ...|...++.+....+.+.|..|.-+.-+.-+ ..
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatd----aeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k 562 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATD----AEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACK 562 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh----hhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHH
Confidence 7888888888887766543 7788999999999999999 99999999999999999999888444443322 23
Q ss_pred HHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHc
Q 004093 94 PLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVV 173 (774)
Q Consensus 94 ~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~ 173 (774)
.-|....-|..+.+ +...+..-|+-|+ ..+|.+...|....+- |.+.|++..|.++|.||..
T Consensus 563 ~nW~~rG~yyLea~------n~h~aV~~fQsAL---R~dPkD~n~W~gLGeA---------Y~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAH------NLHGAVCEFQSAL---RTDPKDYNLWLGLGEA---------YPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hhhhhccccccCcc------chhhHHHHHHHHh---cCCchhHHHHHHHHHH---------HHhcCceehHHHhhhhhHh
Confidence 44544222222211 2333444455444 3578888999888775 4456888899999999987
Q ss_pred c-cCccHHHHHHHH-----HHHHHHh---hHH-------------HHHHHHHH---H--HHHHHHHHHHHHH-HHH----
Q 004093 174 T-PTHHVEQLWKDY-----ENFENSV---SRQ-------------LAKGLLSE---Y--QSKYTSARAVYRE-RKK---- 221 (774)
Q Consensus 174 ~-P~~~~e~l~~~y-----~~fE~~~---~~~-------------lak~~l~e---~--~~~y~~Ar~i~k~-~~~---- 221 (774)
+ |.+-...++..- .+++..+ ... ++...+.. . ..-+..|....++ ++.
T Consensus 625 LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 6 544333322211 1111111 000 01100000 0 0000001000000 000
Q ss_pred ---------------------------------HHHHhhh---ccCCCCCCCCc-----h----------h-HHHHHHHH
Q 004093 222 ---------------------------------YCEEIDW---NMLAVPPTGSY-----K----------E-EQQWIAWK 249 (774)
Q Consensus 222 ---------------------------------~~~~L~~---~~~~~pP~~~~-----~----------~-~~q~~lW~ 249 (774)
+...+.. .+... |++.. + . ..-..+-.
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l-~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGi 783 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGAL-KKNDLLFLGYECGIAHLSLAIHMYPWYNLGI 783 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccC-cchhHHHHHHHHhhHHHHHhhccchHHHHhH
Confidence 0000000 00001 11000 0 0 00012333
Q ss_pred HHHH-HHh-cCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004093 250 RLLT-FEK-GNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFA 327 (774)
Q Consensus 250 ~yi~-~Ek-~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a 327 (774)
+|+. |.. +.+. .....++.++.++++.+.++...|..++-+ ...|++.-|..-|-+++...|.+...|++++
T Consensus 784 nylr~f~~l~et~-----~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nlg 857 (1238)
T KOG1127|consen 784 NYLRYFLLLGETM-----KDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLG 857 (1238)
T ss_pred HHHHHHHHcCCcc-----hhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccc
Confidence 3443 221 2211 122467899999999999999999999876 4447888899999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHH--HhcCCCC---CHHHHHHHHHHHHhc
Q 004093 328 ELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLD--ARKSPNF---TYHVYVAYALMAFCQ 402 (774)
Q Consensus 328 ~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~--al~~~~~---~~~~~i~~A~lE~~~ 402 (774)
.+.....+++-|...|.++....|. +...|+.-+.+.+..|++-++.++|.. .+..... ....|+. +.+....
T Consensus 858 vL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c-~te~h~~ 935 (1238)
T KOG1127|consen 858 VLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLC-ATEIHLQ 935 (1238)
T ss_pred eeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHH-HHHHHHh
Confidence 9999999999999999999999987 678999999999999999999999988 4433322 1333332 2222222
Q ss_pred CCCHH----HHHHHH------HHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 004093 403 DKDPK----LAHNVF------EAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSL 454 (774)
Q Consensus 403 ~gd~~----~A~~if------e~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~ 454 (774)
+|+++ .+++|. ++-+...|+..--+..-+..+.+++.+++|..++.|++..+
T Consensus 936 Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglL 997 (1238)
T KOG1127|consen 936 NGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLL 997 (1238)
T ss_pred ccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34432 233333 33334455544334444556667888999999999988643
No 93
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=8e-08 Score=99.08 Aligned_cols=187 Identities=16% Similarity=0.103 Sum_probs=161.5
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
...++..+|.+.|..+|.+.......+..++..++.++|.++|+++++..|.+.+..--.+.-+.-.++.+-|...|.++
T Consensus 271 QP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 271 QPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred cHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999988654322222233457889999999999
Q ss_pred hcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC
Q 004093 347 LTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARK---SPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE 423 (774)
Q Consensus 347 l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~---~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~ 423 (774)
++.... .+.++...+....-.+.+|-+...|+||+. .+....++|.+...+.... ||...|.+.|..++..++++
T Consensus 351 LqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~i-GD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 351 LQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTI-GDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEec-cchHHHHHHHHHHhccCcch
Confidence 998765 568888888877788999999999999986 3555689999988876665 99999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 424 PAYILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 424 ~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
.+-+...+-+..+.|+++.||.++..|-+..|
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 99999999999999999999999999998887
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=6.8e-07 Score=99.04 Aligned_cols=116 Identities=17% Similarity=0.108 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 268 NKRIIFTYEQCLMYLY--HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 268 ~~r~~~~yeraL~~~p--~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
...+...|-.+...+| .++++..-++-++--.+++++|+..|+.||...|++..+|..++-.+....+.++|.+.|.+
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHH
Confidence 3445566666666677 57788888888888888888888999999888888888888888888888888888888888
Q ss_pred HhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 004093 346 LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS 384 (774)
Q Consensus 346 ~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~ 384 (774)
+++..|. +..++..++--+...|.+++|.+.|-.|+..
T Consensus 490 ALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 490 ALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 8888886 6677777777777788888888888887753
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.74 E-value=1.1e-06 Score=91.06 Aligned_cols=156 Identities=12% Similarity=0.002 Sum_probs=108.3
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHH---HH
Q 004093 318 DSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT--ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYH---VY 392 (774)
Q Consensus 318 ~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~--~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~---~~ 392 (774)
.....++..+..+...|++++|...|++++...|... ..+|...+..+...++++.|...|+++++..+.... ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 4466788889999999999999999999999888632 257888899999999999999999999986544333 44
Q ss_pred HHHHHHHHhc-------CCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHH
Q 004093 393 VAYALMAFCQ-------DKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKR 465 (774)
Q Consensus 393 i~~A~lE~~~-------~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~ 465 (774)
...+...+.. .|+.+.|.+.|+++++.+|++...+..+....... +. .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~---~~------------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR---LA------------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH---HH------------HHHHH
Confidence 4444443321 25788899999999999999865553332221110 00 00 00112
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHccc
Q 004093 466 FTQFEQMYGDLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 466 ~~~fE~~~Gd~~~i~kv~~R~~~~~pk 492 (774)
...+....|+...+...++++.+.+|.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~ 198 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPD 198 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCC
Confidence 233344678888888888888888774
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.74 E-value=2.5e-07 Score=93.32 Aligned_cols=123 Identities=15% Similarity=0.080 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH-HHhcCHHHHHHHH
Q 004093 300 GSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL-RRTEGVEAARKYF 378 (774)
Q Consensus 300 g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~-~r~~~~~~Ar~if 378 (774)
++.+++...++++++.+|++...|+.++.++...|++++|...|++++...|+ ...++..++..+ .+.|+.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~------- 124 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQH------- 124 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCC-------
Confidence 34455555555555555555555555555555555555555555555555554 344444444422 233321
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCc
Q 004093 379 LDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPP 456 (774)
Q Consensus 379 ~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~ 456 (774)
..+.|+++|+++++..|+++..+...+..+...|++++|...|+++++..|+
T Consensus 125 --------------------------~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 125 --------------------------MTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred --------------------------CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 0355555555555555555555555555555555555555555555555543
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.7e-05 Score=84.89 Aligned_cols=175 Identities=14% Similarity=0.035 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 004093 268 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 347 (774)
Q Consensus 268 ~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l 347 (774)
.+-++..|+++|..... ...+.+....+++....++.--..|.-..--..-+.-....|++..|...|.++|
T Consensus 314 ~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred HHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34445555555544333 2233334444555555555555555443333334555567799999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHH
Q 004093 348 TDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYI 427 (774)
Q Consensus 348 ~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~ 427 (774)
...|+ .+.+|.+.+..+...+.+..|.+-.+.+++..+.....|+.-+..++.. +++++|.+.|+.+++..|++.++.
T Consensus 386 kr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~m-k~ydkAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 386 KRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAM-KEYDKALEAYQEALELDPSNAEAI 463 (539)
T ss_pred hcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCchhHHHH
Confidence 99997 5789999999999999999999999999999888889999988876665 899999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 004093 428 LEYADFLSRLNDDRNIRALFERALS 452 (774)
Q Consensus 428 ~~ya~~l~~~gd~~~Ar~lfEraL~ 452 (774)
..|.++...++....--.++++++.
T Consensus 464 ~~~~rc~~a~~~~~~~ee~~~r~~~ 488 (539)
T KOG0548|consen 464 DGYRRCVEAQRGDETPEETKRRAMA 488 (539)
T ss_pred HHHHHHHHHhhcCCCHHHHHHhhcc
Confidence 8888887766555555666777554
No 98
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.71 E-value=2.6e-07 Score=100.34 Aligned_cols=147 Identities=16% Similarity=0.214 Sum_probs=116.9
Q ss_pred ccchhccccCCCCCHHHHHHHHHHhccC-------------ChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCC
Q 004093 9 ESEENITGVADKYNVETAEILANSALHL-------------PVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNN 75 (774)
Q Consensus 9 ~~e~~i~~~~nP~d~~~W~~l~~~~~~~-------------~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n 75 (774)
+.++++. .||+|+++|+.|++.-... -.++...+|++||+.+|.+ ..+|..|++...+..+
T Consensus 7 el~~~v~--~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~----~~L~l~~l~~~~~~~~ 80 (321)
T PF08424_consen 7 ELNRRVR--ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS----ERLLLGYLEEGEKVWD 80 (321)
T ss_pred HHHHHHH--hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCC
Confidence 3456777 9999999999999854322 1356679999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCC---------------hHhH
Q 004093 76 DDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISS---------------GPIW 139 (774)
Q Consensus 76 ~~~a~~ifeRaL~~~p-~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s---------------~~iW 139 (774)
-+.+.+-++++|...| ++.||..|++|...... ....+.++++|.++|+.+...... ..+.
T Consensus 81 ~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~---~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~ 157 (321)
T PF08424_consen 81 SEKLAKKWEELLFKNPGSPELWREYLDFRQSNFA---SFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVF 157 (321)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 9999999999999876 68999999999987422 245789999999999876432221 1255
Q ss_pred HHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHc
Q 004093 140 LEYITFLKSLPALNAQEESQRMIAIRKAYQRAVV 173 (774)
Q Consensus 140 ~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~ 173 (774)
..++.|+.. .|..+.|..++|-.+.
T Consensus 158 ~r~~~fl~~---------aG~~E~Ava~~Qa~lE 182 (321)
T PF08424_consen 158 LRLCRFLRQ---------AGYTERAVALWQALLE 182 (321)
T ss_pred HHHHHHHHH---------CCchHHHHHHHHHHHH
Confidence 666777654 4778889999998885
No 99
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.70 E-value=5.8e-07 Score=84.35 Aligned_cols=109 Identities=17% Similarity=0.019 Sum_probs=53.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 004093 274 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT 353 (774)
Q Consensus 274 ~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~ 353 (774)
.|++++...|.+....+.++..+...|++++|...|++++...|.+..+|+.++.++...|++++|..+|++++...|.
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~- 83 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD- 83 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 3455555555555555555555555555555555555555555555555555555555555555555555555444443
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 004093 354 TALAHIQFIRFLRRTEGVEAARKYFLDARK 383 (774)
Q Consensus 354 ~~~~~~~~a~~~~r~~~~~~Ar~if~~al~ 383 (774)
....|..++.++...|+.++|.+.|+++++
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 233444444444444444444444444444
No 100
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=3.7e-06 Score=89.53 Aligned_cols=221 Identities=13% Similarity=0.073 Sum_probs=144.6
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
....++..|+++...+|..-...-.|+-++.+.|+++...++-.+.+........-|+--+.+....+++++|...-+|+
T Consensus 247 dn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~ 326 (564)
T KOG1174|consen 247 DYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKC 326 (564)
T ss_pred CchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 34445566666666666666666666666666666666666666666655555555666666666667888888888999
Q ss_pred hcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHH
Q 004093 347 LTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAY 426 (774)
Q Consensus 347 l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l 426 (774)
|+.++. ...+++.-++.++..++...|.-.|..|....++....|-.+...... .|.+++|.-.-...++.+|.++.-
T Consensus 327 I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA-~~~~kEA~~~An~~~~~~~~sA~~ 404 (564)
T KOG1174|consen 327 IDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA-QKRFKEANALANWTIRLFQNSARS 404 (564)
T ss_pred hccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHhhcchhh
Confidence 988887 467888888999999999999999999998877776666654332222 367777777777777777777655
Q ss_pred HHHHH-HHHHhc-CChhHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc
Q 004093 427 ILEYA-DFLSRL-NDDRNIRALFERALSSLPPEE-SIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 427 ~~~ya-~~l~~~-gd~~~Ar~lfEraL~~~p~e~-~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk 492 (774)
+...+ ..+..- ---++|..++|++|...|.-. ..... .++...-|...++.++++|....+++
T Consensus 405 LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~---AEL~~~Eg~~~D~i~LLe~~L~~~~D 470 (564)
T KOG1174|consen 405 LTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLI---AELCQVEGPTKDIIKLLEKHLIIFPD 470 (564)
T ss_pred hhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHH---HHHHHhhCccchHHHHHHHHHhhccc
Confidence 43332 222211 124778888888887766211 12222 22333334455667777777777774
No 101
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=4.4e-06 Score=84.13 Aligned_cols=155 Identities=15% Similarity=0.073 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q 004093 270 RIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTD 349 (774)
Q Consensus 270 r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~ 349 (774)
-+..++++....+|.+..+-..+|.+++..|++++|.++|++.+.-+|.+..++-.-.-+...+|+--+|++.....++.
T Consensus 70 lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~ 149 (289)
T KOG3060|consen 70 LAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK 149 (289)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 35577888888889999999999999999999999999999999999999888876666777788888999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCCHH
Q 004093 350 SVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDK--DPKLAHNVFEAGLKRFMHEPA 425 (774)
Q Consensus 350 ~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~g--d~~~A~~ife~al~~~p~~~~ 425 (774)
++. ...+|..++.++...+.+++|.-.+++++-..+..+-.+..+|.+.|...| ++.-|++.|+++++..|++..
T Consensus 150 F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 150 FMN-DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLR 226 (289)
T ss_pred hcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHH
Confidence 887 579999999999999999999999999998888778888889998887622 456799999999999986544
No 102
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.67 E-value=3.6e-06 Score=95.32 Aligned_cols=224 Identities=17% Similarity=0.166 Sum_probs=165.1
Q ss_pred chHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMY--------LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA--------LPDSEMLRYAFAELE 330 (774)
Q Consensus 267 ~~~r~~~~yeraL~~--------~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~--------~P~~~~l~~~~a~l~ 330 (774)
..+.+...+++|+.. .+.-...--.+|.++...+++.+|..+|++|+.. +|....++..++.++
T Consensus 214 ~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly 293 (508)
T KOG1840|consen 214 RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLY 293 (508)
T ss_pred cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 455667788888887 3444455556899999999999999999999975 233456677889999
Q ss_pred HHhCCHHHHHHHHHHHhcCCCC-------CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC--------CCCCHHHHHHH
Q 004093 331 ESRGAIAAAKKLYESLLTDSVN-------TTALAHIQFIRFLRRTEGVEAARKYFLDARKS--------PNFTYHVYVAY 395 (774)
Q Consensus 331 e~~g~~e~A~~iyek~l~~~~~-------~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~--------~~~~~~~~i~~ 395 (774)
...|++++|+..+++++++... .........+..+...++++.|..+++++++. ..+...++.++
T Consensus 294 ~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl 373 (508)
T KOG1840|consen 294 YKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANL 373 (508)
T ss_pred hccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 9999999999888888865321 12234556666777789999999999988762 12457889999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHc----CC-C---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---Cch--hHHHH
Q 004093 396 ALMAFCQDKDPKLAHNVFEAGLKRF----MH-E---PAYILEYADFLSRLNDDRNIRALFERALSSL---PPE--ESIEV 462 (774)
Q Consensus 396 A~lE~~~~gd~~~A~~ife~al~~~----p~-~---~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~---p~e--~~~~l 462 (774)
+.+.+.. |.+++|.++|+.++.+. .. . ...+...+....+.+.+.+|-.+|++++... .++ +....
T Consensus 374 ~~l~~~~-gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~ 452 (508)
T KOG1840|consen 374 AELYLKM-GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYT 452 (508)
T ss_pred HHHHHHh-cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHH
Confidence 9987665 99999999999999863 11 1 2334455555578889999999999998743 111 33445
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 463 WKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 463 w~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
+......-...|+++.+.+++.+....-.
T Consensus 453 ~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 453 YLNLAALYRAQGNYEAAEELEEKVLNARE 481 (508)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 55555566688999999998888886654
No 103
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=6e-07 Score=101.65 Aligned_cols=210 Identities=12% Similarity=0.141 Sum_probs=174.5
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
+..+.+..+||+ ...|...+.+|...|+..+|..+..+-++ .|....+|..++++..+. .+|++
T Consensus 412 GitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~-------s~yEk 475 (777)
T KOG1128|consen 412 GITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDP-------SLYEK 475 (777)
T ss_pred chHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccCh-------HHHHH
Confidence 445666667765 36788899999999999999999888888 677777887777776554 45566
Q ss_pred HhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHH
Q 004093 346 LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPA 425 (774)
Q Consensus 346 ~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~ 425 (774)
+.+........+...++....+.+++.++.+.|++.++..+....+|..+......+ ++...|.+.|-+.+...|++.+
T Consensus 476 awElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql-ek~q~av~aF~rcvtL~Pd~~e 554 (777)
T KOG1128|consen 476 AWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL-EKEQAAVKAFHRCVTLEPDNAE 554 (777)
T ss_pred HHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH-hhhHHHHHHHHHHhhcCCCchh
Confidence 555544333456666666667789999999999999999888899999988777776 8999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccccc
Q 004093 426 YILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTG 494 (774)
Q Consensus 426 l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk~~ 494 (774)
-|....-.+++.++..+|+..+.+|++..- ++..+|+.|+..-...|..+++.+..+|+...-.+..
T Consensus 555 aWnNls~ayi~~~~k~ra~~~l~EAlKcn~--~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 555 AWNNLSTAYIRLKKKKRAFRKLKEALKCNY--QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred hhhhhhHHHHHHhhhHHHHHHHHHHhhcCC--CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999999753 6789999999999899999999999999987765444
No 104
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.67 E-value=3.4e-05 Score=88.30 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=61.7
Q ss_pred hhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCHHHHHHHHHHHHHHhhccCCccH
Q 004093 38 VAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC--LQVPLWRCYIRFIRKVYEKKGTEGQ 115 (774)
Q Consensus 38 i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~--p~~~lW~~Yl~~~~~~~~~~~~~~~ 115 (774)
..++...+|++++..|++ +..-+..+-.+...++++.|.+..+++|... .+...|+..+-..--.++ .
T Consensus 460 h~kslqale~av~~d~~d----p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr------~ 529 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTD----PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKR------L 529 (799)
T ss_pred HHHHHHHHHHHHhcCCCC----chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh------h
Confidence 456778899999999999 8777777777777889999999999999884 456889888876654443 3
Q ss_pred HHHHHHHHHHHHhcC
Q 004093 116 EETRKAFDFMLSHVG 130 (774)
Q Consensus 116 e~ar~~ye~aL~~vg 130 (774)
..+..+-+.++.-.|
T Consensus 530 ~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 530 KEALDVVDAALEEFG 544 (799)
T ss_pred HHHHHHHHHHHHHhh
Confidence 455556665555444
No 105
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.66 E-value=7e-07 Score=83.81 Aligned_cols=119 Identities=15% Similarity=0.081 Sum_probs=108.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC
Q 004093 307 KVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN 386 (774)
Q Consensus 307 ~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~ 386 (774)
+.|++++...|++....+.++..+...|++++|...|++++...|. ...+|..++.++...++++.|..+|+++++..+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5789999999999888889999999999999999999999998886 678999999999999999999999999999877
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHH
Q 004093 387 FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYI 427 (774)
Q Consensus 387 ~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~ 427 (774)
..+.++...+.+.+.. |+.+.|.+.|+++++..|++..++
T Consensus 83 ~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 83 DDPRPYFHAAECLLAL-GEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhccccchHH
Confidence 7789998888876664 999999999999999999987754
No 106
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.64 E-value=0.00011 Score=84.16 Aligned_cols=302 Identities=12% Similarity=0.092 Sum_probs=186.4
Q ss_pred ccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhcc--C
Q 004093 34 LHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKK--G 111 (774)
Q Consensus 34 ~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~~~lW~~Yl~~~~~~~~~~--~ 111 (774)
+.+.+++|...++..-...++. ..+-..-+++++++|++++|+.+|...+...|+... .|-.++.-.+... .
T Consensus 16 e~g~~~~AL~~L~~~~~~I~Dk----~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~--Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQILDK----LAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYD--YYRGLEEALGLQLQLS 89 (517)
T ss_pred HCCCHHHHHHHHHhhhhhCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--HHHHHHHHHhhhcccc
Confidence 4578999999999999999998 888889999999999999999999999998775322 2222222221000 1
Q ss_pred CccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHH-HHHHHHHHHHc--ccCc--cHHHHHHHH
Q 004093 112 TEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMI-AIRKAYQRAVV--TPTH--HVEQLWKDY 186 (774)
Q Consensus 112 ~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~-~ar~vYqral~--~P~~--~~e~l~~~y 186 (774)
.+..+....+|+..... .|.+..+-.--+.|.. ...+. .+.......+. +|.. ++..+|..-
T Consensus 90 ~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~----------g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~ 156 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLE----------GDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDP 156 (517)
T ss_pred cccHHHHHHHHHHHHHh---CccccchhHhhcccCC----------HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcCh
Confidence 23467777788733332 2332222111122221 11232 23333333332 3421 222222110
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC-CchhHHHHHHHHHHHHHHhcCCCCCCch
Q 004093 187 ENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTG-SYKEEQQWIAWKRLLTFEKGNPQRIDTA 265 (774)
Q Consensus 187 ~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~-~~~~~~q~~lW~~yi~~Ek~n~~~~d~~ 265 (774)
. .+..+..-...|...+...- ..+... ...+....-+|..|..-.--+ ..
T Consensus 157 ~-----------------------K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd-----~~ 207 (517)
T PF12569_consen 157 E-----------------------KAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYD-----YL 207 (517)
T ss_pred h-----------------------HHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHH-----Hh
Confidence 0 01111111122323332110 010000 001122345787775322111 11
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
+....+..+.++||.+.|+.+++++.-|.++...|++.+|.+.++.|....+.+.-+....+.+..+.|++++|.++...
T Consensus 208 g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45678889999999999999999999999999999999999999999999999988888999999999999999999988
Q ss_pred HhcCCCCCcH------HHHH--HHHHHHHHhcCHHHHHHHHHHHhc
Q 004093 346 LLTDSVNTTA------LAHI--QFIRFLRRTEGVEAARKYFLDARK 383 (774)
Q Consensus 346 ~l~~~~~~~~------~~~~--~~a~~~~r~~~~~~Ar~if~~al~ 383 (774)
.+....+... .+|+ ..++.+.|.|++..|.+-|..+.+
T Consensus 288 Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 288 FTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8876532111 2553 445677788898888888777664
No 107
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.64 E-value=2.6e-06 Score=93.82 Aligned_cols=182 Identities=11% Similarity=-0.052 Sum_probs=137.4
Q ss_pred HHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHhCCHHHHHHHHHH
Q 004093 272 IFTYEQCLMYLYH---YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYA---FAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 272 ~~~yeraL~~~p~---~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~---~a~l~e~~g~~e~A~~iyek 345 (774)
...|.+.....+. ..+.++..+..+...|++++|.+++++++...|.+...+.. +.......+..+.+...++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 105 (355)
T cd05804 26 AAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL 105 (355)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhc
Confidence 4567777766653 45677777888889999999999999999999998876652 22222223455556666655
Q ss_pred HhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCH-
Q 004093 346 LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP- 424 (774)
Q Consensus 346 ~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~- 424 (774)
.....+. ...++..++..+...|++++|...|+++++..+.....+...+.+.+.. |++++|...+++++...+.++
T Consensus 106 ~~~~~~~-~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~-g~~~eA~~~l~~~l~~~~~~~~ 183 (355)
T cd05804 106 WAPENPD-YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ-GRFKEGIAFMESWRDTWDCSSM 183 (355)
T ss_pred cCcCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc-CCHHHHHHHHHhhhhccCCCcc
Confidence 4344443 3445566777888999999999999999998777777888888877775 999999999999999876443
Q ss_pred ---HHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 425 ---AYILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 425 ---~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
..+..++.++...|++++|..+|++++...+
T Consensus 184 ~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 184 LRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 2456788999999999999999999975433
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.61 E-value=4e-06 Score=85.14 Aligned_cols=178 Identities=13% Similarity=0.026 Sum_probs=149.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 004093 272 IFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSV 351 (774)
Q Consensus 272 ~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~ 351 (774)
...+=+....+|...++ ..++.-+...|+-+.+..+..++....|.+..+...++......|++..|...+.++....|
T Consensus 53 ~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p 131 (257)
T COG5010 53 AAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP 131 (257)
T ss_pred HHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC
Confidence 34555666778888899 88999888899888888888888888888888887899999999999999999999999888
Q ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 004093 352 NTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYA 431 (774)
Q Consensus 352 ~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya 431 (774)
+ .+.+|..++-.+.+.|+.+.||.-|.++++.......+..+.+...+- .||++.|+.++..+...-+.+..+....+
T Consensus 132 ~-d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~gd~~~A~~lll~a~l~~~ad~~v~~NLA 209 (257)
T COG5010 132 T-DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RGDLEDAETLLLPAYLSPAADSRVRQNLA 209 (257)
T ss_pred C-ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cCCHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 7 688999999999999999999999999999877777777777766444 59999999999999888877888888888
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 004093 432 DFLSRLNDDRNIRALFERALS 452 (774)
Q Consensus 432 ~~l~~~gd~~~Ar~lfEraL~ 452 (774)
-....+|++..|+.+-..=+.
T Consensus 210 l~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 210 LVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHhhcCChHHHHhhcccccc
Confidence 888888999998877655443
No 109
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=0.00028 Score=78.15 Aligned_cols=100 Identities=11% Similarity=0.024 Sum_probs=70.9
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCH-HHHHHHHHHHHHHhhcc
Q 004093 32 SALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQV-PLWRCYIRFIRKVYEKK 110 (774)
Q Consensus 32 ~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~~-~lW~~Yl~~~~~~~~~~ 110 (774)
.+..++++.|..+|-.++.+.|.+ .-++-.-...+.+.+.|+.|.+==.++...+|+. +.|..-..-..-.+
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~n----hvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg--- 84 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTN----HVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG--- 84 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCc----cchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc---
Confidence 345568899999999999999998 6677777777888888888888888888888773 55554444333333
Q ss_pred CCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 004093 111 GTEGQEETRKAFDFMLSHVGSDISSGPIWLEYIT 144 (774)
Q Consensus 111 ~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~ 144 (774)
..+.+...|..+|.. ||+...+.....+
T Consensus 85 ---~~~eA~~ay~~GL~~---d~~n~~L~~gl~~ 112 (539)
T KOG0548|consen 85 ---DYEEAILAYSEGLEK---DPSNKQLKTGLAQ 112 (539)
T ss_pred ---cHHHHHHHHHHHhhc---CCchHHHHHhHHH
Confidence 377888888877764 5555555544433
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.60 E-value=4.7e-06 Score=99.56 Aligned_cols=202 Identities=13% Similarity=0.080 Sum_probs=145.2
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC-------
Q 004093 281 YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT------- 353 (774)
Q Consensus 281 ~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~------- 353 (774)
..|.+.++|..++..+...+++++|.++++.++..+|+...+|+..+.++.+.+++.++.-+ +++...+..
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 35789999999999999999999999999999999999999999888888888777666555 555443321
Q ss_pred -----------cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Q 004093 354 -----------TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 422 (774)
Q Consensus 354 -----------~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~ 422 (774)
...+...++.++.+.|+.++|..+|+++++..+.+..+..++|...... +.++|+.++.+++..+-+
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHh
Confidence 1257777888888889999999999999988777788888888764443 888999999888886432
Q ss_pred C------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc
Q 004093 423 E------PAYILEYADFLSRLNDDRNIRALFERALSSLPPEES----IEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 423 ~------~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~----~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk 492 (774)
. .++|..|+.+ ..-+.+.-..+.++.+........ ..+|+.|- +..+++....+++++++..++
T Consensus 182 ~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~----~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYK----ALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred hhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHh----hhhhhhHHHHHHHHHHhcCCc
Confidence 1 2456555433 223344444444555544332222 34555543 455788888999999988883
No 111
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.58 E-value=6.9e-06 Score=92.12 Aligned_cols=221 Identities=15% Similarity=0.112 Sum_probs=166.6
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
+..+.+...-+.++..++.+.-.|.-++-++-...++++|++.|..|+...|+|..+|.-++.+..+.++++-....-..
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~ 134 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQ 134 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34555667778888899999999999999998899999999999999999999999999999999999999988888888
Q ss_pred HhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHH
Q 004093 346 LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP--NFTYHVYVAYALMAFCQ-----DKDPKLAHNVFEAGLK 418 (774)
Q Consensus 346 ~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~--~~~~~~~i~~A~lE~~~-----~gd~~~A~~ife~al~ 418 (774)
+++..+. ....|+.++....-.|++..|..+.+...+.. ....+.+-....+.|.. .|..+.|.+.+..--.
T Consensus 135 LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 135 LLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred HHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 8988886 56789999998888999999999988777643 23344444433333322 2444444444333222
Q ss_pred HcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHccc
Q 004093 419 RFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYG----DLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 419 ~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~G----d~~~i~kv~~R~~~~~pk 492 (774)
..-+...+...-++++.++++.++|..+|.+.|..+| +-|.-|..++...| ..+.+..++++..+.+|+
T Consensus 214 ~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP-----dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 214 QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP-----DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc-----hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 3334456677888999999999999999999999988 33555556666665 334444566666666664
No 112
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.57 E-value=6e-05 Score=86.36 Aligned_cols=136 Identities=15% Similarity=0.056 Sum_probs=83.8
Q ss_pred HHHHHH--HHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004093 356 LAHIQF--IRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADF 433 (774)
Q Consensus 356 ~~~~~~--a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~ 433 (774)
.+|..| ++.+.+.|++++|....++|+...+...+.|+.-|.+.-+. |++..|...++.|...+..|--+-...+.+
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~-G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy 271 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA-GDLKEAAEAMDEARELDLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 355433 56666677777777777777777666677777777765553 777777777777777666554444566677
Q ss_pred HHhcCChhHHHHHHHHHHhcC--CchhH---HHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHccc
Q 004093 434 LSRLNDDRNIRALFERALSSL--PPEES---IEVWKRFTQFE--QMYGDLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 434 l~~~gd~~~Ar~lfEraL~~~--p~e~~---~~lw~~~~~fE--~~~Gd~~~i~kv~~R~~~~~pk 492 (774)
+++.|++++|..++..-.... +..+- .-+|-..-.-+ .+.|++..+.+.+....+.|..
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 777777777776665554432 11122 23443332222 1357777777777777766654
No 113
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.57 E-value=3.8e-06 Score=95.08 Aligned_cols=207 Identities=14% Similarity=0.117 Sum_probs=155.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC--
Q 004093 282 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA--------LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSV-- 351 (774)
Q Consensus 282 ~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~--------~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~-- 351 (774)
.|.....-..++..+...|++++|..++++|++. +|.-......+|.++...+++++|..+|++++.+..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3555555566899999999999999999999987 343333444689999999999999999999997532
Q ss_pred ---C--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC-----CCC---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004093 352 ---N--TTALAHIQFIRFLRRTEGVEAARKYFLDARKSP-----NFT---YHVYVAYALMAFCQDKDPKLAHNVFEAGLK 418 (774)
Q Consensus 352 ---~--~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~-----~~~---~~~~i~~A~lE~~~~gd~~~A~~ife~al~ 418 (774)
. ....+++.++..+...|++++|+..+++|++.- ... ...+...+.+. ...++++.|.++|.++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~-~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAIL-QSMNEYEEAKKLLQKALK 353 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHH
Confidence 1 134577888888999999999999999988631 111 22334444443 335899999999999998
Q ss_pred HcC-----CC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-------chhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004093 419 RFM-----HE---PAYILEYADFLSRLNDDRNIRALFERALSSLP-------PEESIEVWKRFTQFEQMYGDLDSTLKVE 483 (774)
Q Consensus 419 ~~p-----~~---~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p-------~e~~~~lw~~~~~fE~~~Gd~~~i~kv~ 483 (774)
+.. ++ +.+...++..+...|.+++|+.+|++||+... ......||..-..++ +.+....+.+++
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~-~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE-ELKKYEEAEQLF 432 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH-HhcccchHHHHH
Confidence 632 23 34567888899999999999999999998542 123467888887775 566677788888
Q ss_pred HHHHHHc
Q 004093 484 QRRKEAL 490 (774)
Q Consensus 484 ~R~~~~~ 490 (774)
.+.+...
T Consensus 433 ~~~~~i~ 439 (508)
T KOG1840|consen 433 EEAKDIM 439 (508)
T ss_pred HHHHHHH
Confidence 8888777
No 114
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.53 E-value=9.9e-06 Score=84.45 Aligned_cols=199 Identities=14% Similarity=0.098 Sum_probs=146.4
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
....+..-|..|+..+|++....+.-+..+...|+..-|+.=+.+.|..-|+-....+..+.++.+.|.+++|..-|..+
T Consensus 53 Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~v 132 (504)
T KOG0624|consen 53 QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQV 132 (504)
T ss_pred hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHH
Confidence 44556677888888889988888888888888888888888899999988888888888888888899999999999999
Q ss_pred hcCCCCCcH--HHHHHHHHHHHH------------hcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 004093 347 LTDSVNTTA--LAHIQFIRFLRR------------TEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNV 412 (774)
Q Consensus 347 l~~~~~~~~--~~~~~~a~~~~r------------~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~i 412 (774)
|+..|+... .++..++..... .|+...|+....+.++..+-....|..-|..... .|++..|+.=
T Consensus 133 l~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~-~~e~k~AI~D 211 (504)
T KOG0624|consen 133 LQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA-EGEPKKAIHD 211 (504)
T ss_pred HhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh-cCcHHHHHHH
Confidence 988886322 244333332211 2455666666666666544344555555554333 3788888888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 004093 413 FEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQ 468 (774)
Q Consensus 413 fe~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~ 468 (774)
+..+-+...++.+.+.....++...|+.+++......+|+..| ++..-+-.|-.
T Consensus 212 lk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp--dHK~Cf~~YKk 265 (504)
T KOG0624|consen 212 LKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDP--DHKLCFPFYKK 265 (504)
T ss_pred HHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc--chhhHHHHHHH
Confidence 8888888888888888888888888888888888888888877 34444444433
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.53 E-value=1.7e-05 Score=94.87 Aligned_cols=224 Identities=10% Similarity=0.041 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----
Q 004093 245 WIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE---- 320 (774)
Q Consensus 245 ~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~---- 320 (774)
...|...+...+.. ...+.+..+.+.++..+|....+|+..+.++.+.++.+.+.-+ +++...+.+.
T Consensus 31 ~~a~~~Li~~~~~~-------~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 31 FKELDDLIDAYKSE-------NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred HHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 46788777765322 2456778899999999999999999999988888877666555 6655555443
Q ss_pred ---------------HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC-
Q 004093 321 ---------------MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS- 384 (774)
Q Consensus 321 ---------------~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~- 384 (774)
.+.+.+|.++.+.|+.++|..+|+++++.++. ++.+...|+.++... ++++|+.++.+|+..
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999987 678889999888888 999999999999863
Q ss_pred --CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHH
Q 004093 385 --PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR--FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESI 460 (774)
Q Consensus 385 --~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~--~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~ 460 (774)
......+..-|..+.....-+.+.-.+|.++.+.. +..-..++.-..+++...++++++..++.++|+..+. +..
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~ 258 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNK 258 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chh
Confidence 11111111112222111123444444555444443 2223445555556666778899999999999998763 323
Q ss_pred HHHHHHHHHHHHhCCHHHHH
Q 004093 461 EVWKRFTQFEQMYGDLDSTL 480 (774)
Q Consensus 461 ~lw~~~~~fE~~~Gd~~~i~ 480 (774)
.....-..|-.+|++...++
T Consensus 259 a~~~l~~~y~~kY~~~~~~e 278 (906)
T PRK14720 259 AREELIRFYKEKYKDHSLLE 278 (906)
T ss_pred hHHHHHHHHHHHccCcchHH
Confidence 33333333334566644333
No 116
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.49 E-value=9.5e-05 Score=86.50 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 004093 269 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 348 (774)
Q Consensus 269 ~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~ 348 (774)
-.++.-|+-++...|.+...|..+++.+.+.|++..|.++|.+|....|.+.-..|.-+.++...|++.++...++..+.
T Consensus 579 h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 579 HGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34567799999999999999999999999999999999999999999999887777777777777877777777666654
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.41 E-value=3.4e-05 Score=78.51 Aligned_cols=174 Identities=12% Similarity=0.023 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 004093 303 DAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDAR 382 (774)
Q Consensus 303 e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al 382 (774)
..+...+-+....+|++..+ ..++..+...|+-+....+..+.....+.+ ..+...+++...+.|++..|...|.++.
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d-~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD-RELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc-HHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 33677777788889999988 899998888888887777777766656552 4455559999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHH
Q 004093 383 KSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEV 462 (774)
Q Consensus 383 ~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~l 462 (774)
...+..|.+|...+...... |+.+.|+.-|..+++.+++++.+....+-.+.-.||++.|+.++.++...-+ ....+
T Consensus 128 ~l~p~d~~~~~~lgaaldq~-Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~--ad~~v 204 (257)
T COG5010 128 RLAPTDWEAWNLLGAALDQL-GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA--ADSRV 204 (257)
T ss_pred ccCCCChhhhhHHHHHHHHc-cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC--CchHH
Confidence 98888899999988876665 9999999999999999999999999999888999999999999999998754 22344
Q ss_pred HHHHHHHHHHhCCHHHHHH
Q 004093 463 WKRFTQFEQMYGDLDSTLK 481 (774)
Q Consensus 463 w~~~~~fE~~~Gd~~~i~k 481 (774)
-......-...||+..+++
T Consensus 205 ~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 205 RQNLALVVGLQGDFREAED 223 (257)
T ss_pred HHHHHHHHhhcCChHHHHh
Confidence 4444444446777765554
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=5.5e-05 Score=82.96 Aligned_cols=154 Identities=14% Similarity=0.008 Sum_probs=114.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 004093 283 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 362 (774)
Q Consensus 283 p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a 362 (774)
|.....||..+.-....|++++|++.+...++..|+|..+|...++++...++..+|.+.|++++...|. ...+|+.|+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHH
Confidence 5677788877777777888888888888888888888888888888888888888888888888888876 367788888
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhH
Q 004093 363 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRN 442 (774)
Q Consensus 363 ~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~ 442 (774)
+.+...|+.++|..++++.+...+..+..|--+|+..-. .|+..+|. ..+++.+.-.|+++.
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~-~g~~~~a~-----------------~A~AE~~~~~G~~~~ 443 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE-LGNRAEAL-----------------LARAEGYALAGRLEQ 443 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-hCchHHHH-----------------HHHHHHHHhCCCHHH
Confidence 888888888888888888877766667777777665333 25554443 345555556677777
Q ss_pred HHHHHHHHHhcCC
Q 004093 443 IRALFERALSSLP 455 (774)
Q Consensus 443 Ar~lfEraL~~~p 455 (774)
|...+.++.++..
T Consensus 444 A~~~l~~A~~~~~ 456 (484)
T COG4783 444 AIIFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHHHhcc
Confidence 7777777777654
No 119
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.31 E-value=2.9e-05 Score=84.39 Aligned_cols=110 Identities=18% Similarity=0.227 Sum_probs=95.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 004093 273 FTYEQCLMYLYHYPDIWYDYATWNAKSGS------------IDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAK 340 (774)
Q Consensus 273 ~~yeraL~~~p~~~~iW~~ya~~l~~~g~------------~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~ 340 (774)
.-|++.+..+|++.+.|+.|+.+....-. .+.-+.+|++|++.+|.+..|+..|........+-++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45899999999999999999999987532 356678999999999999999999999988888889999
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHh---cCHHHHHHHHHHHhc
Q 004093 341 KLYESLLTDSVNTTALAHIQFIRFLRRT---EGVEAARKYFLDARK 383 (774)
Q Consensus 341 ~iyek~l~~~~~~~~~~~~~~a~~~~r~---~~~~~Ar~if~~al~ 383 (774)
+-+++++..++. ...+|..|+++.... -.+...+.+|.+++.
T Consensus 86 ~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 86 KKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 999999999886 578999999988763 358899999998875
No 120
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.30 E-value=1e-05 Score=68.50 Aligned_cols=96 Identities=21% Similarity=0.164 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Q 004093 288 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR 367 (774)
Q Consensus 288 iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r 367 (774)
+|+..+..+...|++++|..+++++++..|.+..+++.++.++...+++++|.+.|++++...+. ...+|..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 57788888888999999999999999999988888888899888889999999999999888776 34678888888888
Q ss_pred hcCHHHHHHHHHHHhcC
Q 004093 368 TEGVEAARKYFLDARKS 384 (774)
Q Consensus 368 ~~~~~~Ar~if~~al~~ 384 (774)
.++.+.|...|.++++.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 88888888888888764
No 121
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.24 E-value=2.3e-05 Score=71.18 Aligned_cols=102 Identities=24% Similarity=0.235 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC--cHHHHHH
Q 004093 286 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT--TALAHIQ 360 (774)
Q Consensus 286 ~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~---~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~--~~~~~~~ 360 (774)
+++++..+..+.+.|++++|.+.|++++...|++ ...++.++.++...|+++.|...|++++...|.. ...++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678888888888999999999999999888765 4577788888888888888999998888876652 2456777
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 004093 361 FIRFLRRTEGVEAARKYFLDARKSPNF 387 (774)
Q Consensus 361 ~a~~~~r~~~~~~Ar~if~~al~~~~~ 387 (774)
++.++...++++.|.+.|.++++..+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 777777778888888888877775444
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.24 E-value=1.6e-05 Score=75.62 Aligned_cols=102 Identities=14% Similarity=-0.006 Sum_probs=91.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 004093 283 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 362 (774)
Q Consensus 283 p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a 362 (774)
+..-+.-+.|+-.+...|++++|..+|+-.+...|.+...|+.++..+...|++++|...|.+++...++ .+..+...+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHH
Confidence 3444667888888999999999999999999999999999999999999999999999999999999987 567888888
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCC
Q 004093 363 RFLRRTEGVEAARKYFLDARKSP 385 (774)
Q Consensus 363 ~~~~r~~~~~~Ar~if~~al~~~ 385 (774)
..+...|+++.|++.|+.++...
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998754
No 123
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=0.0018 Score=74.60 Aligned_cols=234 Identities=14% Similarity=0.191 Sum_probs=127.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKAL---------------------PDSEMLRYAFAELEESRGAIAAAKKLY 343 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~---------------------P~~~~l~~~~a~l~e~~g~~e~A~~iy 343 (774)
.+.+|-=+++++++.|+.+.|+.+|..|-..+ ..+....+.+|..|++.|++.+|...|
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 55788888999999999999999999885421 122334456677777777777776666
Q ss_pred HHHhc------CCCCCcHHHHHHHHHHHHHh--cCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHH---
Q 004093 344 ESLLT------DSVNTTALAHIQFIRFLRRT--EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNV--- 412 (774)
Q Consensus 344 ek~l~------~~~~~~~~~~~~~a~~~~r~--~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~i--- 412 (774)
.++-. ....+ .+--.++++.... .+.-.|-..|+. ...|..-|.+.|+..|-+.+|.++
T Consensus 991 TrAqafsnAIRlcKEn--d~~d~L~nlal~s~~~d~v~aArYyEe--------~g~~~~~AVmLYHkAGm~~kALelAF~ 1060 (1416)
T KOG3617|consen 991 TRAQAFSNAIRLCKEN--DMKDRLANLALMSGGSDLVSAARYYEE--------LGGYAHKAVMLYHKAGMIGKALELAFR 1060 (1416)
T ss_pred HHHHHHHHHHHHHHhc--CHHHHHHHHHhhcCchhHHHHHHHHHH--------cchhhhHHHHHHHhhcchHHHHHHHHh
Confidence 55432 11110 0111122222211 122222233333 122333444445544544444332
Q ss_pred ------HHHHHH-HcC-CCHHHHHHHHHHHHhcCChhHHHHH------HHHHHhcCC-----------------------
Q 004093 413 ------FEAGLK-RFM-HEPAYILEYADFLSRLNDDRNIRAL------FERALSSLP----------------------- 455 (774)
Q Consensus 413 ------fe~al~-~~p-~~~~l~~~ya~~l~~~gd~~~Ar~l------fEraL~~~p----------------------- 455 (774)
++..-+ ..+ .+|.++...++|.....++++|..+ |++||+.+.
T Consensus 1061 tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~ 1140 (1416)
T KOG3617|consen 1061 TQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPN 1140 (1416)
T ss_pred hcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCcc
Confidence 111111 123 4789999999999999999888665 566665331
Q ss_pred chhHHHHHHHHHHHHHHhCCHHHHHHHH-------HHHHHHccccccCCc-----chhhhhhhhHhhhcccCCCCCCChh
Q 004093 456 PEESIEVWKRFTQFEQMYGDLDSTLKVE-------QRRKEALSRTGEEGA-----SALEDSLQDVVSRYSFMDLWPCSSK 523 (774)
Q Consensus 456 ~e~~~~lw~~~~~fE~~~Gd~~~i~kv~-------~R~~~~~pk~~~d~~-----~a~~~~~~~~~~ry~f~d~~p~~~~ 523 (774)
.+....+.....+|-...|++..+-|-+ +-|..+++-...++- ++-+..+|..+..|-=--+|.-.|.
T Consensus 1141 e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq 1220 (1416)
T KOG3617|consen 1141 EQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQ 1220 (1416)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChH
Confidence 1245789999999999999987665533 233333331111210 1112233444444444445666666
Q ss_pred hhhhh
Q 004093 524 DLDHL 528 (774)
Q Consensus 524 ~l~~l 528 (774)
-||.+
T Consensus 1221 ~mK~I 1225 (1416)
T KOG3617|consen 1221 TMKDI 1225 (1416)
T ss_pred HHhhh
Confidence 66655
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=4.9e-05 Score=86.59 Aligned_cols=118 Identities=16% Similarity=0.088 Sum_probs=77.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHH
Q 004093 299 SGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYF 378 (774)
Q Consensus 299 ~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if 378 (774)
+++++++.+.++++++.+|-....||.++-...+.++++.|.+.|.+++...|+ ....|.++...+.+.+...+|+..+
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l 576 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKL 576 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHH
Confidence 355666666666666666666666666666666666666666666666666665 4566666666666666666666666
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004093 379 LDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLK 418 (774)
Q Consensus 379 ~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~ 418 (774)
++|++.....|.+|.++..+.... |.++.|.+.|.+.+.
T Consensus 577 ~EAlKcn~~~w~iWENymlvsvdv-ge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 577 KEALKCNYQHWQIWENYMLVSVDV-GEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHhhcCCCCCeeeechhhhhhhc-ccHHHHHHHHHHHHH
Confidence 666666655666666666655554 666666666666655
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=0.00048 Score=75.77 Aligned_cols=154 Identities=13% Similarity=0.037 Sum_probs=130.0
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004093 317 PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYA 396 (774)
Q Consensus 317 P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A 396 (774)
|.....|+..+.-+...|++++|+..+..++...|+ +...|....+++.+.++.++|.+.|++++...+...-+++.++
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 677788888888888899999999999999999997 5677888889999999999999999999998777788999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCH
Q 004093 397 LMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDL 476 (774)
Q Consensus 397 ~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~ 476 (774)
...... |++.+|.+++.+.+...|+++..|...++-+..+|+..++..-+-..+. ..|++
T Consensus 382 ~all~~-g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~-------------------~~G~~ 441 (484)
T COG4783 382 QALLKG-GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA-------------------LAGRL 441 (484)
T ss_pred HHHHhc-CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH-------------------hCCCH
Confidence 987775 9999999999999999999999999999999999998887765544433 24566
Q ss_pred HHHHHHHHHHHHHcc
Q 004093 477 DSTLKVEQRRKEALS 491 (774)
Q Consensus 477 ~~i~kv~~R~~~~~p 491 (774)
+.+.....|+.+...
T Consensus 442 ~~A~~~l~~A~~~~~ 456 (484)
T COG4783 442 EQAIIFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHHHHHhcc
Confidence 666666666666664
No 126
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.17 E-value=5.5e-06 Score=85.21 Aligned_cols=144 Identities=16% Similarity=0.265 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhc-C------------C--CCCCchhchHHHHHHH
Q 004093 211 SARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKG-N------------P--QRIDTASSNKRIIFTY 275 (774)
Q Consensus 211 ~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~-n------------~--~~~d~~~~~~r~~~~y 275 (774)
+-+.+.+.|..|+..|.+. . ..+.-+..||.+|-. + . ..+.+-...+++.+.|
T Consensus 29 E~~~IvktRr~fE~rL~rr------~------~klnDf~~YI~yE~nleklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~ 96 (435)
T COG5191 29 ELRRIVKTRRKFELRLQRR------E------KKLNDFMRYIKYECNLEKLRAKRVKRKKVGKKASFSDMSIPQKKIFEL 96 (435)
T ss_pred HHHHHHHHHHHHHHHHhcc------c------chHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccchhccccceeeEee
Confidence 3456677777888777631 1 113456778877631 0 0 0011112345667788
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHhcCCCCCc
Q 004093 276 EQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEE-SRGAIAAAKKLYESLLTDSVNTT 354 (774)
Q Consensus 276 eraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e-~~g~~e~A~~iyek~l~~~~~~~ 354 (774)
.|+....+.++.+|.+|+.+..+.+.+.+.-++|..+++.+|.+.++|...+.++. ..++++.+|.+|.+++..++. .
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~-~ 175 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR-S 175 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-C
Confidence 89999999999999999999999999999999999999999999999987676654 468999999999999999987 6
Q ss_pred HHHHHHHHHHHHH
Q 004093 355 ALAHIQFIRFLRR 367 (774)
Q Consensus 355 ~~~~~~~a~~~~r 367 (774)
+.+|+.|.+++..
T Consensus 176 p~iw~eyfr~El~ 188 (435)
T COG5191 176 PRIWIEYFRMELM 188 (435)
T ss_pred chHHHHHHHHHHH
Confidence 7899999888764
No 127
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.17 E-value=2.5e-05 Score=86.22 Aligned_cols=84 Identities=15% Similarity=0.049 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 004093 269 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 348 (774)
Q Consensus 269 ~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~ 348 (774)
..++..|+++|...|.++.+|+.++..+...|++++|+..+++|+...|.+...|+.++.++...|++++|...|++++.
T Consensus 19 ~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 19 ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCC
Q 004093 349 DSVN 352 (774)
Q Consensus 349 ~~~~ 352 (774)
..|.
T Consensus 99 l~P~ 102 (356)
T PLN03088 99 LAPG 102 (356)
T ss_pred hCCC
Confidence 5554
No 128
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.15 E-value=8.9e-06 Score=66.85 Aligned_cols=67 Identities=19% Similarity=0.321 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHhcCCC
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG-AIAAAKKLYESLLTDSV 351 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g-~~e~A~~iyek~l~~~~ 351 (774)
++.+|...|..+...|++++|+..|++|+..+|++..+|+.++..+...| ++++|...|+++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999999999999999999999999 79999999999998765
No 129
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.12 E-value=5.3e-05 Score=83.59 Aligned_cols=90 Identities=13% Similarity=0.044 Sum_probs=48.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHH
Q 004093 293 ATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVE 372 (774)
Q Consensus 293 a~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~ 372 (774)
|.-+...|++++|+..|.+|+...|.+..+|+.++.++...|++++|...+++++...|. ...+|+.++..+...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 344445556666666666666666666666666666665666666666666666555554 3344444444444444444
Q ss_pred HHHHHHHHHhc
Q 004093 373 AARKYFLDARK 383 (774)
Q Consensus 373 ~Ar~if~~al~ 383 (774)
.|+..|+++++
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 130
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.12 E-value=0.002 Score=69.31 Aligned_cols=216 Identities=13% Similarity=0.025 Sum_probs=148.6
Q ss_pred hHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 268 NKRIIFTYEQCLMYLY-HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 268 ~~r~~~~yeraL~~~p-~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
..++..+..++-+.-+ ..-.+.+.-++.+...|++..|+.-..+++...|.+..........+...|++..+..+..++
T Consensus 134 ~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L 213 (400)
T COG3071 134 EDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL 213 (400)
T ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444555666665522 233455566777777788888888888888888877776656666666666666555555444
Q ss_pred hcCCC-----------------------------------------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 004093 347 LTDSV-----------------------------------------NTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP 385 (774)
Q Consensus 347 l~~~~-----------------------------------------~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~ 385 (774)
-+..- ...+.+-..|+.-+.+.|..++|.++.+++++..
T Consensus 214 ~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~ 293 (400)
T COG3071 214 RKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ 293 (400)
T ss_pred HHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 33210 0124566888888889999999999999999854
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHH
Q 004093 386 NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKR 465 (774)
Q Consensus 386 ~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~ 465 (774)
.. .....-+. .-..++...=.+..|..++.+|++|.++...+.++.+.+...+|...||.||..-+. ..=|..
T Consensus 294 ~D-~~L~~~~~---~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s---~~~~~~ 366 (400)
T COG3071 294 WD-PRLCRLIP---RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS---ASDYAE 366 (400)
T ss_pred cC-hhHHHHHh---hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC---hhhHHH
Confidence 33 22211111 122478888899999999999999999999999999999999999999999997662 222333
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHc
Q 004093 466 FTQFEQMYGDLDSTLKVEQRRKEAL 490 (774)
Q Consensus 466 ~~~fE~~~Gd~~~i~kv~~R~~~~~ 490 (774)
....-...|+......+.+.....+
T Consensus 367 la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 367 LADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHh
Confidence 3333347899888887777666443
No 131
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.11 E-value=3.7e-05 Score=65.00 Aligned_cols=97 Identities=13% Similarity=0.079 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 004093 358 HIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRL 437 (774)
Q Consensus 358 ~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~ 437 (774)
|...+..+.+.++++.|..+|+++++..+....++...+.+.... ++++.|.+.|+.++...+.+...+...+.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL-GKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 344445555555666666666665554444444555555544443 5666666666666666665555566666666666
Q ss_pred CChhHHHHHHHHHHhcCC
Q 004093 438 NDDRNIRALFERALSSLP 455 (774)
Q Consensus 438 gd~~~Ar~lfEraL~~~p 455 (774)
|+++.|..+|++++...|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 666666666666665443
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.10 E-value=8.3e-05 Score=71.04 Aligned_cols=112 Identities=18% Similarity=0.108 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHH
Q 004093 269 KRIIFTYEQCLMYLYHY---PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKL 342 (774)
Q Consensus 269 ~r~~~~yeraL~~~p~~---~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~---~~l~~~~a~l~e~~g~~e~A~~i 342 (774)
..+...+++.+...|.. ...++.++..+...|++++|...|+.++...|+. ...++.++.++...|++++|...
T Consensus 28 ~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~ 107 (145)
T PF09976_consen 28 AKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALAT 107 (145)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44556788888888877 5677778888888899999999999998877654 34567788888888999999888
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 004093 343 YESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDAR 382 (774)
Q Consensus 343 yek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al 382 (774)
++..-. .+. ...++...++++.+.|+.++|+..|++|+
T Consensus 108 L~~~~~-~~~-~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 108 LQQIPD-EAF-KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHhccC-cch-HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 876322 222 35677788888888899999998888874
No 133
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.044 Score=61.84 Aligned_cols=120 Identities=14% Similarity=0.120 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHh--------cCCCCCHHHHHHHHHHHHhcCCCH
Q 004093 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDAR--------KSPNFTYHVYVAYALMAFCQDKDP 406 (774)
Q Consensus 335 ~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al--------~~~~~~~~~~i~~A~lE~~~~gd~ 406 (774)
...++..++..+.+.+|.....+-+..|++...+|+.+.|..++...+ +... ...-+.+...++...++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCC
Confidence 456777888888887776434577788889999999999999998433 2211 223333333334334788
Q ss_pred HHHHHHHHHHHHHc----CCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCc
Q 004093 407 KLAHNVFEAGLKRF----MHE---PAYILEYADFLSRLNDDRNIRALFERALSSLPP 456 (774)
Q Consensus 407 ~~A~~ife~al~~~----p~~---~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~ 456 (774)
+.|..++..+++-. +.. ..+|...+.|..+.|..++|..++|..++..|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN 490 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc
Confidence 88999999998742 222 246778899999999999999999999998873
No 134
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.04 E-value=0.00013 Score=69.63 Aligned_cols=106 Identities=11% Similarity=-0.075 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004093 317 PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYA 396 (774)
Q Consensus 317 P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A 396 (774)
++..+..+.|+-.+...|++++|..+|+.++...|. +...|+.++-...+.|++.+|...|.+|+...+..+..+...+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 445556678888888889999999999999988886 6788999999999999999999999999887777788888777
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCCH
Q 004093 397 LMAFCQDKDPKLAHNVFEAGLKRFMHEP 424 (774)
Q Consensus 397 ~lE~~~~gd~~~A~~ife~al~~~p~~~ 424 (774)
...... |+.+.|++.|+.++......+
T Consensus 111 ~c~L~l-G~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 111 ECYLAC-DNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHhccCh
Confidence 776665 899999999999988764443
No 135
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.02 E-value=0.00023 Score=70.02 Aligned_cols=119 Identities=13% Similarity=0.105 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHH
Q 004093 283 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 359 (774)
Q Consensus 283 p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~---~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~ 359 (774)
+.....++..+..+...|++++|...|+++++..|+. ...++.++.++...|++++|...|++++...+. ....+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHH
Confidence 3566778889999999999999999999999876653 467889999999999999999999999998886 467777
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC
Q 004093 360 QFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE 423 (774)
Q Consensus 360 ~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~ 423 (774)
.++..+...++...+..-+..++ ..++.|.+++++++...|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhhCchh
Confidence 77887777777666555444432 12456778888888877776
No 136
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=5.8e-05 Score=78.21 Aligned_cols=68 Identities=18% Similarity=0.068 Sum_probs=38.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 004093 297 AKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 365 (774)
Q Consensus 297 ~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~ 365 (774)
.+.+++.+|+..|.+||...|++..++...|..+.++|.++.|.+-.+++|.++|. .+.+|..++..+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~ 159 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAY 159 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHH
Confidence 34455666666666666666666666666666666666666665555555555554 334444443333
No 137
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00025 Score=73.97 Aligned_cols=116 Identities=15% Similarity=0.016 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---CCHHHHHHHHH
Q 004093 268 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESR---GAIAAAKKLYE 344 (774)
Q Consensus 268 ~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~---g~~e~A~~iye 344 (774)
.++.....+.-|..+|.+.+-|..++..+..+|+.+.|...|.+|++..|++.+++..|++.+... ..-.+++.+|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 566678899999999999999999999999999999999999999999999999999999876544 23457888999
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 004093 345 SLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS 384 (774)
Q Consensus 345 k~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~ 384 (774)
+++..++. +..+...++.-+..+|++++|...++..++.
T Consensus 218 ~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 218 QALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 99988886 3455555666666678888888888888775
No 138
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.0001 Score=76.38 Aligned_cols=108 Identities=13% Similarity=-0.002 Sum_probs=91.9
Q ss_pred HHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHH
Q 004093 330 EESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLA 409 (774)
Q Consensus 330 ~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A 409 (774)
+...++|++|...|.++|+..|. .+-.|...+..+.+.|.++.|.+-.+.|+...+..+..|..+....+.. |+++.|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~-gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL-GKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc-CcHHHH
Confidence 34568899999999999999997 5778899999999999999999999999998888899999998876664 999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 004093 410 HNVFEAGLKRFMHEPAYILEYADFLSRLND 439 (774)
Q Consensus 410 ~~ife~al~~~p~~~~l~~~ya~~l~~~gd 439 (774)
...|.++|...|++..++...-..+.++++
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 999999999999999877544333334433
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.91 E-value=0.00047 Score=65.83 Aligned_cols=80 Identities=20% Similarity=0.259 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHhcCHHH
Q 004093 299 SGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT--ALAHIQFIRFLRRTEGVEA 373 (774)
Q Consensus 299 ~g~~e~A~~v~erAl~~~P~~---~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~--~~~~~~~a~~~~r~~~~~~ 373 (774)
.++...+...+++.+...|.+ ...++.+|......|++++|...|+.++...++.. ..+++.++.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 444555555555555555554 23344445555555555555555555555443211 1233444444444444444
Q ss_pred HHHHH
Q 004093 374 ARKYF 378 (774)
Q Consensus 374 Ar~if 378 (774)
|..++
T Consensus 104 Al~~L 108 (145)
T PF09976_consen 104 ALATL 108 (145)
T ss_pred HHHHH
Confidence 44444
No 140
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.91 E-value=0.00016 Score=67.19 Aligned_cols=112 Identities=19% Similarity=0.365 Sum_probs=80.2
Q ss_pred HHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCC---------CHHH
Q 004093 218 ERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYH---------YPDI 288 (774)
Q Consensus 218 ~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~---------~~~i 288 (774)
++..|+..|.... . ....++.|..||.|...+-.. .+....+..++++|+..+.+ +-.+
T Consensus 4 ~r~~~e~~i~~~~-~--------~dDPL~~w~~yI~w~~~~~p~---~~~~~~L~~lLer~~~~f~~~~~Y~nD~Rylki 71 (126)
T PF08311_consen 4 QRQEFEEQIRSYE-E--------GDDPLDPWLRYIKWIEENYPS---GGKQSGLLELLERCIRKFKDDERYKNDERYLKI 71 (126)
T ss_dssp HHHHHHHHHHCCG-G--------SS-CHHHHHHHHHHHHHHCTT---CCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHH
T ss_pred HHHHHHHHHHHcc-C--------CCCChHHHHHHHHHHHHHCCC---CCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHH
Confidence 4556777775322 0 112378999999998753211 13445667899999997654 3478
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 004093 289 WYDYATWNAKSGSIDAAIKVFQRALKA--LPDSEMLRYAFAELEESRGAIAAAKKLYESLL 347 (774)
Q Consensus 289 W~~ya~~l~~~g~~e~A~~v~erAl~~--~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l 347 (774)
|+.||.+.. .+.++|...... .-....+|..||.+++..|++++|.++|+.+|
T Consensus 72 Wi~ya~~~~------~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 72 WIKYADLSS------DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHTTBS------HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 888887653 788899888874 44778899999999999999999999998865
No 141
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.90 E-value=3.4e-05 Score=62.62 Aligned_cols=63 Identities=29% Similarity=0.358 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 004093 290 YDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 290 ~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~ 352 (774)
+..+..+.+.|++++|+.+|+++++..|++...|+.++.++...|++++|...|+++++..|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 356778888888888888888888888888888888888888888888888888888887775
No 142
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.89 E-value=0.06 Score=58.21 Aligned_cols=139 Identities=20% Similarity=0.107 Sum_probs=108.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q 004093 275 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT 354 (774)
Q Consensus 275 yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~ 354 (774)
.++.-....+++.+-..|+..+.+.|+.++|.++.+.+++..-+.. +...+..+ .-++.+.-.+..++.++..++ .
T Consensus 252 W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l--~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 252 WKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRL--RPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred HHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhc--CCCCchHHHHHHHHHHHhCCC-C
Confidence 3444444557889999999999999999999999999999865443 33222221 347778888899999998887 4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 004093 355 ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR 419 (774)
Q Consensus 355 ~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~ 419 (774)
+.++..++.++.+.+.+.+|...|+.|++..+. .+.|...|...-.. |+...|-.+++.++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~-g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQL-GEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHc-CChHHHHHHHHHHHHH
Confidence 689999999999999999999999999987654 55666566654454 8999999999998864
No 143
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.88 E-value=0.00012 Score=78.36 Aligned_cols=198 Identities=14% Similarity=0.115 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKAL-P-DSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF 364 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~-P-~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~ 364 (774)
.....|+.|+...++.+.+..-++..+... + .+..+.+.-|.++...|++++|.+++.+. .........+.+
T Consensus 67 ~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi 140 (290)
T PF04733_consen 67 QAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQI 140 (290)
T ss_dssp HHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHH
Confidence 344555666655445555555555444321 2 34445555566666678888777766543 124555556677
Q ss_pred HHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHH
Q 004093 365 LRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ-DKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNI 443 (774)
Q Consensus 365 ~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~-~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~A 443 (774)
+.+.++.+-|++.++.+.+......-+.+.-|.+-... ...+..|..+|+.....++.++.++...+..++.+|++++|
T Consensus 141 ~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eA 220 (290)
T PF04733_consen 141 LLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEA 220 (290)
T ss_dssp HHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHH
Confidence 88899999999999998876554332222222222222 13578899999998888888888888899999999999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHccc
Q 004093 444 RALFERALSSLPPEESIEVWKRFTQFEQMYGDL-DSTLKVEQRRKEALSR 492 (774)
Q Consensus 444 r~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~-~~i~kv~~R~~~~~pk 492 (774)
..+++.++...| +....+...+......|+. +.+.+...+.....|.
T Consensus 221 e~~L~~al~~~~--~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 221 EELLEEALEKDP--NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHCCC-C--CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHHHhcc--CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 999999998777 3455566667776677876 5667777777777763
No 144
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.87 E-value=0.018 Score=56.36 Aligned_cols=216 Identities=18% Similarity=0.145 Sum_probs=160.8
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 004093 272 IFTYEQCLMYLYH--YPDIWYDYATWNAKSGSIDAAIKVFQRALK--ALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 347 (774)
Q Consensus 272 ~~~yeraL~~~p~--~~~iW~~ya~~l~~~g~~e~A~~v~erAl~--~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l 347 (774)
...+..++...+. ........+..+...+++..+...+..++. ..+.....+...+.+....+++..+...+.+++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
T COG0457 43 LELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122 (291)
T ss_pred HHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455556655554 367777888888889999999999999987 677778888888999999999999999999999
Q ss_pred cCCCCCcHHHHHHHHH-HHHHhcCHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-
Q 004093 348 TDSVNTTALAHIQFIR-FLRRTEGVEAARKYFLDARKSPN---FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH- 422 (774)
Q Consensus 348 ~~~~~~~~~~~~~~a~-~~~r~~~~~~Ar~if~~al~~~~---~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~- 422 (774)
...+.. ...+..... .+...++++.|...|.+++...+ .....+......... .++...|...+..++...+.
T Consensus 123 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~ 200 (291)
T COG0457 123 ALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA-LGRYEEALELLEKALKLNPDD 200 (291)
T ss_pred cCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH-hcCHHHHHHHHHHHHhhCccc
Confidence 876652 233333444 67788999999999999977433 223334433333223 37899999999999999888
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 423 EPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 423 ~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
....+......+...+++..+...+.+++...+. ....+......+. ..|..+.+.....+..+..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 201 DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLL-ELGRYEEALEALEKALELDP 267 (291)
T ss_pred chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHhCc
Confidence 5777778888888888999999999999998773 1223333334444 67778888888888888777
No 145
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.83 E-value=7.2e-05 Score=61.12 Aligned_cols=64 Identities=27% Similarity=0.366 Sum_probs=43.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 004093 297 AKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQF 361 (774)
Q Consensus 297 ~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~ 361 (774)
.+.|++++|+++|++++...|++..+++.++.++...|++++|+.++++++...|+ .+.++..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~-~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD-NPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT-HHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-HHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777776665 24444433
No 146
>PRK11906 transcriptional regulator; Provisional
Probab=97.83 E-value=0.00075 Score=74.61 Aligned_cols=148 Identities=10% Similarity=0.017 Sum_probs=114.6
Q ss_pred hchHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 004093 266 SSNKRIIFTYEQCL---MYLYHYPDIWYDYATWNAKS---------GSIDAAIKVFQRALKALPDSEMLRYAFAELEESR 333 (774)
Q Consensus 266 ~~~~r~~~~yeraL---~~~p~~~~iW~~ya~~l~~~---------g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~ 333 (774)
...+++..+|.+|+ ..+|.+...+..++..++.. .+..+|+...++|++..|.+.......+.+.-..
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 35677888999999 89999998888887776643 2356789999999999999999888888888788
Q ss_pred CCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHH-HHHHHH-HHHhcCCCHHHHHH
Q 004093 334 GAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHV-YVAYAL-MAFCQDKDPKLAHN 411 (774)
Q Consensus 334 g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~-~i~~A~-lE~~~~gd~~~A~~ 411 (774)
++++.+...|++++..+|+ .+.+|..++....-.|+.++|+..+++|++..+....+ .++... + |. ....+.|++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~-~~-~~~~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDM-YV-PNPLKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHH-Hc-CCchhhhHH
Confidence 8899999999999999998 68888888888888899999999999988876553222 222111 2 23 356777777
Q ss_pred HHHHH
Q 004093 412 VFEAG 416 (774)
Q Consensus 412 ife~a 416 (774)
+|-+-
T Consensus 429 ~~~~~ 433 (458)
T PRK11906 429 LYYKE 433 (458)
T ss_pred HHhhc
Confidence 76443
No 147
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.80 E-value=0.00087 Score=77.33 Aligned_cols=146 Identities=16% Similarity=0.081 Sum_probs=75.8
Q ss_pred hcCCCHHHHHHHHHHHHH--cC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcH
Q 004093 281 YLYHYPDIWYDYATWNAK--SG---SIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTA 355 (774)
Q Consensus 281 ~~p~~~~iW~~ya~~l~~--~g---~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~ 355 (774)
..|.+.+.|-.|.+-... .+ +...|+.+|++|++..|++...|-.++..+.....+ .+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~-------------~~~--- 395 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQ-------------QPL--- 395 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhc-------------CCc---
Confidence 346677777776554332 22 256788888888888888766654443333221000 000
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004093 356 LAHIQFIRFLRRTEGVEAARKYFLDARKS--PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADF 433 (774)
Q Consensus 356 ~~~~~~a~~~~r~~~~~~Ar~if~~al~~--~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~ 433 (774)
....+..+.....+++.. .+....+|...+.+... .|+++.|...|++++...| +...+..++.+
T Consensus 396 -----------~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~ 462 (517)
T PRK10153 396 -----------DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV-KGKTDEAYQAINKAIDLEM-SWLNYVLLGKV 462 (517)
T ss_pred -----------cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 001223334444444332 12224445544444333 3666666666666666665 34445555666
Q ss_pred HHhcCChhHHHHHHHHHHhcCC
Q 004093 434 LSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 434 l~~~gd~~~Ar~lfEraL~~~p 455 (774)
+...|+.++|...|++|+...|
T Consensus 463 ~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 463 YELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHcCCHHHHHHHHHHHHhcCC
Confidence 6666666666666666666555
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.79 E-value=0.00037 Score=63.18 Aligned_cols=100 Identities=19% Similarity=0.121 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC---CHHHHHHHHH
Q 004093 323 RYAFAELEESRGAIAAAKKLYESLLTDSVNTT--ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF---TYHVYVAYAL 397 (774)
Q Consensus 323 ~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~--~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~---~~~~~i~~A~ 397 (774)
++..+..+...|++++|.+.|++++...|... ..++..++..+.+.++++.|.+.|++++...+. ...++...+.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444444444555555555555544433211 223444444444444444444444444432111 1223333333
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCC
Q 004093 398 MAFCQDKDPKLAHNVFEAGLKRFMHE 423 (774)
Q Consensus 398 lE~~~~gd~~~A~~ife~al~~~p~~ 423 (774)
+.... ++.+.|.+.|+++++.+|++
T Consensus 85 ~~~~~-~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 85 SLQEL-GDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHh-CChHHHHHHHHHHHHHCcCC
Confidence 33232 44444444444444444443
No 149
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.78 E-value=0.00059 Score=71.75 Aligned_cols=103 Identities=19% Similarity=0.188 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC--cHHHH
Q 004093 285 YPDIWYDYATWN-AKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT--TALAH 358 (774)
Q Consensus 285 ~~~iW~~ya~~l-~~~g~~e~A~~v~erAl~~~P~~---~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~--~~~~~ 358 (774)
....||..+.-+ .+.|++++|+..|+..++..|++ ...++.+|.++...|++++|...|+++++.+|.. ...++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 456777777655 56789999999999999999987 4678888999999999999999999999877753 24566
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 004093 359 IQFIRFLRRTEGVEAARKYFLDARKSPNF 387 (774)
Q Consensus 359 ~~~a~~~~r~~~~~~Ar~if~~al~~~~~ 387 (774)
...+.++...|+.++|+.+|+++++..+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 66666666677777777777777765443
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.77 E-value=7.4e-05 Score=64.12 Aligned_cols=77 Identities=25% Similarity=0.265 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 268 NKRIIFTYEQCLMYLYH--YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 268 ~~r~~~~yeraL~~~p~--~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
.+.++..|++++...|. +..+|+.+|..+.+.|++++|..++++ ....+.+...++.+|..+..+|++++|+++|++
T Consensus 5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 34455556666665553 344555556666666666666666665 444455545555556666666666666666554
No 151
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.75 E-value=0.0052 Score=64.07 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLR---YAFAELEESRGAIAAAKKLYESLLTDSVNTT 354 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~---~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~ 354 (774)
.++.++..+.-+...|++++|++.|++.+...|.+.... +.++..+.+.++++.|...|+++++..|++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 566677778888889999999999999999999885443 5677777889999999999999999988753
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.74 E-value=0.00069 Score=72.36 Aligned_cols=163 Identities=15% Similarity=0.081 Sum_probs=99.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC-----CcHHHHH
Q 004093 291 DYATWNAKSGSIDAAIKVFQRALKALP--DS----EMLRYAFAELEESRGAIAAAKKLYESLLTDSVN-----TTALAHI 359 (774)
Q Consensus 291 ~ya~~l~~~g~~e~A~~v~erAl~~~P--~~----~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~-----~~~~~~~ 359 (774)
..+..+...+++++|.+.|.+|....- ++ ...+..-+.++... ++++|..+|++++..... .-..++.
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~ 118 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLK 118 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334455555666666666666654321 11 12233334444333 777888888887764221 1234667
Q ss_pred HHHHHHHHh-cCHHHHHHHHHHHhcC----CC--CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-------HH
Q 004093 360 QFIRFLRRT-EGVEAARKYFLDARKS----PN--FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE-------PA 425 (774)
Q Consensus 360 ~~a~~~~r~-~~~~~Ar~if~~al~~----~~--~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~-------~~ 425 (774)
..+.++... ++++.|.+.|++|+.. .. ....++...|.+.... |+++.|.++|++......++ ..
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l-~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL-GRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 777777777 8889999999988862 11 1245667777776665 89999999999888764321 13
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 426 YILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 426 l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
+++.-+-+++..||...|+..|++.....|
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555566777899999999999887665
No 153
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.72 E-value=0.0012 Score=73.25 Aligned_cols=112 Identities=15% Similarity=0.052 Sum_probs=51.1
Q ss_pred HHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHH
Q 004093 328 ELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPK 407 (774)
Q Consensus 328 ~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~ 407 (774)
.+....+.++.|..+|+++.+..|. ++..+++.+...++-.+|.+++.++++..+.....+...|.+.... ++++
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k-~~~~ 251 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE----VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK-KKYE 251 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHH
Confidence 3333344555555555555554432 2333344444444444444444444443333344444444433332 4444
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHH
Q 004093 408 LAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIR 444 (774)
Q Consensus 408 ~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar 444 (774)
.|.++.+++++..|++...|...+..+...|++++|.
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 4444444444444444444444444444444444444
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.71 E-value=0.00013 Score=62.60 Aligned_cols=81 Identities=23% Similarity=0.262 Sum_probs=65.6
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHH
Q 004093 299 SGSIDAAIKVFQRALKALPD--SEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK 376 (774)
Q Consensus 299 ~g~~e~A~~v~erAl~~~P~--~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~ 376 (774)
+|+++.|+.+|++++...|. +...|+.+|..+.+.|++++|..++++ .+..+. ....+..+++.+...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 57889999999999999884 466777889999999999999999988 655554 34566677899999999999999
Q ss_pred HHHHH
Q 004093 377 YFLDA 381 (774)
Q Consensus 377 if~~a 381 (774)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 155
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.69 E-value=0.00044 Score=73.93 Aligned_cols=165 Identities=13% Similarity=0.054 Sum_probs=121.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHH
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT-ALAHIQFIR 363 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~-~~~~~~~a~ 363 (774)
++-+-+..|.++...|++++|++++.++ .+.+.......++...++++.|.+.++++-+...+.. ..+...|..
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~ 175 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 3344445567777789999999888775 5566665667788889999999999999888765421 123344444
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCh-hH
Q 004093 364 FLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDD-RN 442 (774)
Q Consensus 364 ~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~-~~ 442 (774)
+..-.+.+..|..+|++..+..+.++.+....|...... |+++.|.++++.++...|++++.+...+-+....|+. +.
T Consensus 176 l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~-~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL-GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC-T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred HHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhH
Confidence 554445689999999998877666788888888776665 9999999999999999999999988888888888887 66
Q ss_pred HHHHHHHHHhcCC
Q 004093 443 IRALFERALSSLP 455 (774)
Q Consensus 443 Ar~lfEraL~~~p 455 (774)
+..++++.-...|
T Consensus 255 ~~~~l~qL~~~~p 267 (290)
T PF04733_consen 255 AERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHCHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 7777777666655
No 156
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.68 E-value=0.00011 Score=59.92 Aligned_cols=63 Identities=24% Similarity=0.231 Sum_probs=56.8
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAE 328 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~ 328 (774)
+..+.++..|++++..+|++.++|+.++.++.+.|++++|+.++++++...|++..++..++.
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456778899999999999999999999999999999999999999999999998888776664
No 157
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.68 E-value=0.013 Score=57.44 Aligned_cols=186 Identities=19% Similarity=0.149 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhCCHHHHHHHHHH
Q 004093 269 KRIIFTYEQCLM--YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAE-LEESRGAIAAAKKLYES 345 (774)
Q Consensus 269 ~r~~~~yeraL~--~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~-l~e~~g~~e~A~~iyek 345 (774)
......+..++. ..+.....+...+.+....+++..+.+.+..++...+.....+..... .+...++++.+...|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 155 (291)
T COG0457 76 EEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK 155 (291)
T ss_pred HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444556666665 678888999999999999999999999999999988876555555555 78889999999999999
Q ss_pred HhcCCC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Q 004093 346 LLTDSV--NTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF-TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 422 (774)
Q Consensus 346 ~l~~~~--~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~-~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~ 422 (774)
++...+ ......+..........++.+.+...+.+++..... ....+...+...... ++...|...+..++...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 156 ALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL-GKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc-ccHHHHHHHHHHHHhhCcc
Confidence 988554 123445555555566788999999999999987666 466666666655444 7899999999999999887
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 423 EPAYILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 423 ~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
....+......+...+...++...+++++...+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 235 NAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 554444444444477789999999999999877
No 158
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.68 E-value=0.00067 Score=66.41 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQF 361 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~---~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~ 361 (774)
...+|+..+..+...|++++|...|++|+...|+. ...|+.++.++...|++++|...|++++...+. ....|...
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHH
Confidence 45788999999999999999999999999887653 347889999999999999999999999998876 45666666
Q ss_pred HHHHHHhc
Q 004093 362 IRFLRRTE 369 (774)
Q Consensus 362 a~~~~r~~ 369 (774)
+.++...+
T Consensus 113 a~i~~~~~ 120 (168)
T CHL00033 113 AVICHYRG 120 (168)
T ss_pred HHHHHHhh
Confidence 66665443
No 159
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.65 E-value=5.8e-05 Score=77.89 Aligned_cols=95 Identities=23% Similarity=0.294 Sum_probs=80.5
Q ss_pred HHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHhhccCCccHHHHHH
Q 004093 42 APIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRK 120 (774)
Q Consensus 42 r~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p-~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~ 120 (774)
.-.|-|+...||.+ ..+|..|+....+.+-+.++.+||..||..+| ++++|..-+.|+...+. +++.+|.
T Consensus 93 ~f~~~R~tnkff~D----~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~a-----ni~s~Ra 163 (435)
T COG5191 93 IFELYRSTNKFFND----PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIA-----NIESSRA 163 (435)
T ss_pred eEeeehhhhcCCCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhc-----cHHHHHH
Confidence 34577888899999 99999999999999999999999999999986 68999988888876442 5889999
Q ss_pred HHHHHHHhcCCCCCChHhHHHHHHHHhh
Q 004093 121 AFDFMLSHVGSDISSGPIWLEYITFLKS 148 (774)
Q Consensus 121 ~ye~aL~~vg~d~~s~~iW~~yi~fe~~ 148 (774)
+|.++|+. .+.+..||..|.+|+..
T Consensus 164 ~f~~glR~---N~~~p~iw~eyfr~El~ 188 (435)
T COG5191 164 MFLKGLRM---NSRSPRIWIEYFRMELM 188 (435)
T ss_pred HHHhhhcc---CCCCchHHHHHHHHHHH
Confidence 99988875 46677999999999864
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.61 E-value=0.0042 Score=71.73 Aligned_cols=83 Identities=6% Similarity=-0.110 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004093 407 KLAHNVFEAGLKR--FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQ 484 (774)
Q Consensus 407 ~~A~~ife~al~~--~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~ 484 (774)
..+.+..++++.. .+.++..+..++-.....|++++|...|++|+...| . ...|..+..+....|+.+.+...++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s-~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--S-WLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555556665553 566677777777777788999999999999999887 2 4677777777778999999999999
Q ss_pred HHHHHccc
Q 004093 485 RRKEALSR 492 (774)
Q Consensus 485 R~~~~~pk 492 (774)
|+...-|.
T Consensus 478 ~A~~L~P~ 485 (517)
T PRK10153 478 TAFNLRPG 485 (517)
T ss_pred HHHhcCCC
Confidence 99999985
No 161
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.60 E-value=0.008 Score=60.86 Aligned_cols=171 Identities=17% Similarity=0.168 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQF 361 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~---~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~ 361 (774)
.++.++..|.-+...|++++|++.|++.+...|.+ ...++.++..+...|+++.|...|+++++..|.....-+..|
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45677888888999999999999999999999876 456677888888999999999999999999887432222222
Q ss_pred HHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCH-----------------
Q 004093 362 IRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP----------------- 424 (774)
Q Consensus 362 a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~----------------- 424 (774)
+..... +.....++ ..... .+....|...|+..++.+|+++
T Consensus 84 ~~g~~~---~~~~~~~~------------------~~~~D-~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la 141 (203)
T PF13525_consen 84 MLGLSY---YKQIPGIL------------------RSDRD-QTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLA 141 (203)
T ss_dssp HHHHHH---HHHHHHHH-------------------TT----HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHhCccch------------------hcccC-hHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHH
Confidence 111100 00000000 00000 1222334444444444444321
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHhCCHH
Q 004093 425 AYILEYADFLSRLNDDRNIRALFERALSSLPPEES-IEVWKRFTQFEQMYGDLD 477 (774)
Q Consensus 425 ~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~-~~lw~~~~~fE~~~Gd~~ 477 (774)
.--+.-++|+.+.|.+.-|...|+.+++..|.... .+.+...+.--.+.|..+
T Consensus 142 ~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 142 EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 01124567888888888899999999988884332 344444455555677665
No 162
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.002 Score=67.39 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC---HHHHHHHH
Q 004093 302 IDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEG---VEAARKYF 378 (774)
Q Consensus 302 ~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~---~~~Ar~if 378 (774)
.+....-++.-+..+|++..=|..++.++..+|++..|...|.++++..++ +..++..|+..+..+.+ ..+++.+|
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 566777788888888888888888888888888888888888888888876 57778888775554322 34566666
Q ss_pred HHHhcCCCCCH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 004093 379 LDARKSPNFTY--HVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM 421 (774)
Q Consensus 379 ~~al~~~~~~~--~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p 421 (774)
+++++..+.+. ..|+.++.++ +|++..|...|+..++..|
T Consensus 217 ~~al~~D~~~iral~lLA~~afe---~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFE---QGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHH---cccHHHHHHHHHHHHhcCC
Confidence 66666544333 3333333332 3666666666666666544
No 163
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.55 E-value=0.00018 Score=53.65 Aligned_cols=43 Identities=30% Similarity=0.419 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004093 286 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAE 328 (774)
Q Consensus 286 ~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~ 328 (774)
|++|+.++..+...|++++|+++|+++++.+|++..+|..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4789999999999999999999999999999999999988875
No 164
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0014 Score=70.55 Aligned_cols=165 Identities=14% Similarity=-0.048 Sum_probs=122.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC-----------cHHH
Q 004093 289 WYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT-----------TALA 357 (774)
Q Consensus 289 W~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~-----------~~~~ 357 (774)
-+.-++++.-.+++++|.++--+.++..+.+....+.-+.++--..+.+.+...|+++++..|.. ....
T Consensus 172 ~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 172 KLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHH
Confidence 33446667777888888888888888888887766666666666677888888888888877752 1245
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004093 358 HIQFIRFLRRTEGVEAARKYFLDARKSPNF----TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADF 433 (774)
Q Consensus 358 ~~~~a~~~~r~~~~~~Ar~if~~al~~~~~----~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~ 433 (774)
|..-++-..+.|++..|-.+|..|+...+. ..+.|.+.|..-.++ |....|+.-.+.++++.+.-..-++.-++.
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rL-grl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRL-GRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhccc-CCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 666666667778888888888888886443 366777777776665 888888888888888776555555667777
Q ss_pred HHhcCChhHHHHHHHHHHhcC
Q 004093 434 LSRLNDDRNIRALFERALSSL 454 (774)
Q Consensus 434 l~~~gd~~~Ar~lfEraL~~~ 454 (774)
++.+++.+.|..-|++|++..
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 888888888888888888753
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.54 E-value=0.00044 Score=55.95 Aligned_cols=52 Identities=27% Similarity=0.226 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 404 KDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 404 gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
|+++.|+++|+.+++.+|+++..|..++.++..+|++++|+.+|++++...|
T Consensus 11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5556666666666665555555555566655566666666666666555544
No 166
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.54 E-value=0.00034 Score=57.29 Aligned_cols=66 Identities=20% Similarity=0.151 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCC
Q 004093 389 YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLN-DDRNIRALFERALSSLP 455 (774)
Q Consensus 389 ~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~g-d~~~Ar~lfEraL~~~p 455 (774)
..+|...|...+.. |+++.|+..|+++++..|+++.+|...+..+..+| ++++|+..|+++|+..|
T Consensus 3 a~~~~~~g~~~~~~-~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQ-GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHT-THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45666666665553 77777777777777777777777777777777777 57777777777776543
No 167
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.047 Score=63.40 Aligned_cols=100 Identities=27% Similarity=0.386 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCCCC----------HHHHHHHHHHHHHhCCHHHHHHHH
Q 004093 284 HYPDIWYDYATWNAKSGSIDAAIKVFQRA----------LKALPDS----------EMLRYAFAELEESRGAIAAAKKLY 343 (774)
Q Consensus 284 ~~~~iW~~ya~~l~~~g~~e~A~~v~erA----------l~~~P~~----------~~l~~~~a~l~e~~g~~e~A~~iy 343 (774)
|--..+++||.++...+|++.|++.|+++ +.-+|.. ..||--|+.+++..|+.+.|..+|
T Consensus 856 HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 856 HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence 34467889999999999999999999886 2223433 346667899999999999999999
Q ss_pred HHHhcCCCC--------------------CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 004093 344 ESLLTDSVN--------------------TTALAHIQFIRFLRRTEGVEAARKYFLDARK 383 (774)
Q Consensus 344 ek~l~~~~~--------------------~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~ 383 (774)
..+-....- ..-.+-+.+++.+...|++.+|...|.||..
T Consensus 936 ~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 936 SSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 887654321 0122445666777777777777777777653
No 168
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.53 E-value=0.0014 Score=72.59 Aligned_cols=111 Identities=16% Similarity=-0.009 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 004093 268 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 347 (774)
Q Consensus 268 ~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l 347 (774)
.+.++.+|++.....| +++..++..+...++..+|.+++.+++...|.+..+....+.++...++++.|..+.++++
T Consensus 185 ~~~ai~lle~L~~~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av 261 (395)
T PF09295_consen 185 YDEAIELLEKLRERDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAV 261 (395)
T ss_pred HHHHHHHHHHHHhcCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4566778888777665 5777788888888888889999999999999888888888999999999999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 004093 348 TDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDAR 382 (774)
Q Consensus 348 ~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al 382 (774)
...|. .-..|..+++.+...|+++.|...++.+-
T Consensus 262 ~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 262 ELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 98887 45789999999999999999988777543
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.51 E-value=0.0042 Score=66.35 Aligned_cols=176 Identities=14% Similarity=0.070 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC-----CCcHHHHHHHHHHHHHhcCHHHHH
Q 004093 301 SIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSV-----NTTALAHIQFIRFLRRTEGVEAAR 375 (774)
Q Consensus 301 ~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~-----~~~~~~~~~~a~~~~r~~~~~~Ar 375 (774)
++++|...|++|- ..+...+++++|...|.++..... ......|..-+..+.+. +.+.|.
T Consensus 30 ~~e~Aa~~y~~Aa--------------~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKAA--------------NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHHH--------------HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 5677777777664 334455666666666666553221 11224555555555544 888999
Q ss_pred HHHHHHhcC----CC--CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--C----HHHHHHHHHHHHhcCChhHH
Q 004093 376 KYFLDARKS----PN--FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH--E----PAYILEYADFLSRLNDDRNI 443 (774)
Q Consensus 376 ~if~~al~~----~~--~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~--~----~~l~~~ya~~l~~~gd~~~A 443 (774)
..|++|+.. +. .-..++...|.+.....++++.|++.|++|+..+.. . ...+...+.++...|++++|
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A 174 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA 174 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence 999988762 22 125566777776333227999999999999997432 2 34667999999999999999
Q ss_pred HHHHHHHHhcCCc-----hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 444 RALFERALSSLPP-----EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 444 r~lfEraL~~~p~-----e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
..+|++.....-. -.....+...+-.-...||...+.+.+++.....|
T Consensus 175 ~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 175 IEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999975321 12234444444444568999999988888887776
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.49 E-value=0.0017 Score=63.52 Aligned_cols=98 Identities=11% Similarity=0.048 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004093 357 AHIQFIRFLRRTEGVEAARKYFLDARKSPNF---TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADF 433 (774)
Q Consensus 357 ~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~---~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~ 433 (774)
.|...+......++++.|...|++++...+. ...+|...+.+.... |+.+.|++.|++++...|.....+...+.+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~-g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN-GEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 4444444444445555555555555433211 122444444443332 555555555555555555444444333333
Q ss_pred HH-------hcCChh-------HHHHHHHHHHhcCC
Q 004093 434 LS-------RLNDDR-------NIRALFERALSSLP 455 (774)
Q Consensus 434 l~-------~~gd~~-------~Ar~lfEraL~~~p 455 (774)
+. ..|+++ +|..+|++++...|
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 33 444444 44445555555444
No 171
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.012 Score=62.10 Aligned_cols=169 Identities=14% Similarity=0.108 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004093 241 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE 320 (774)
Q Consensus 241 ~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~ 320 (774)
++.++.+|..|..|-.++ .+++...|+-+....--..++|..+|....-.|.+.+|..+-++ +|+++
T Consensus 55 EE~~~~lWia~C~fhLgd---------Y~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k----a~k~p 121 (557)
T KOG3785|consen 55 EEDSLQLWIAHCYFHLGD---------YEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK----APKTP 121 (557)
T ss_pred hhHHHHHHHHHHHHhhcc---------HHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh----CCCCh
Confidence 456789999999988754 67788888877776666779999999998889999999776655 56654
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004093 321 MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAF 400 (774)
Q Consensus 321 ~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~ 400 (774)
.-...+-.+-.+.++-++....-+.+-....+..+.+-+.|++. .+.+|+++|++.+...+....+-+..|...|
T Consensus 122 L~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~-----HYQeAIdvYkrvL~dn~ey~alNVy~ALCyy 196 (557)
T KOG3785|consen 122 LCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRM-----HYQEAIDVYKRVLQDNPEYIALNVYMALCYY 196 (557)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHhcChhhhhhHHHHHHHHH
Confidence 32222222333445544333332222221112233455566654 4689999999999876653333333344445
Q ss_pred hcCCCHHHHHHHHHHHHHHcCCCHHHHH
Q 004093 401 CQDKDPKLAHNVFEAGLKRFMHEPAYIL 428 (774)
Q Consensus 401 ~~~gd~~~A~~ife~al~~~p~~~~l~~ 428 (774)
.. .-++.+.+++.--+..+|+++-...
T Consensus 197 Kl-DYydvsqevl~vYL~q~pdStiA~N 223 (557)
T KOG3785|consen 197 KL-DYYDVSQEVLKVYLRQFPDSTIAKN 223 (557)
T ss_pred hc-chhhhHHHHHHHHHHhCCCcHHHHH
Confidence 54 5678888898888999999875443
No 172
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.45 E-value=0.00067 Score=56.17 Aligned_cols=59 Identities=24% Similarity=0.166 Sum_probs=48.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 004093 294 TWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 294 ~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~ 352 (774)
..+.+.+++++|.+++++++...|.+..+|+.+|.++...|++++|...|+++++..|+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 45677788888888888888888888888888888888888888888888888887775
No 173
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.43 E-value=0.0013 Score=69.32 Aligned_cols=86 Identities=19% Similarity=0.288 Sum_probs=78.7
Q ss_pred chHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHY---PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAK 340 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~---~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~---~~l~~~~a~l~e~~g~~e~A~ 340 (774)
.++.++..|++.+...|++ +.+++.++..+...|++++|+..|+++++..|++ .+.++..+.++...|+.++|+
T Consensus 158 ~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~ 237 (263)
T PRK10803 158 RQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAK 237 (263)
T ss_pred CHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHH
Confidence 4567888999999999987 6899999999999999999999999999998865 678888899999999999999
Q ss_pred HHHHHHhcCCCC
Q 004093 341 KLYESLLTDSVN 352 (774)
Q Consensus 341 ~iyek~l~~~~~ 352 (774)
.+|+++++.+|+
T Consensus 238 ~~~~~vi~~yP~ 249 (263)
T PRK10803 238 AVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHCcC
Confidence 999999999987
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.42 E-value=0.0029 Score=58.24 Aligned_cols=97 Identities=21% Similarity=0.179 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC--cHHHHHHH
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT--TALAHIQF 361 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~---~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~--~~~~~~~~ 361 (774)
.++|+.+..+...|+.++|+.+|++++...... ...++.++..+...|++++|..++++++...|.+ ...+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 567778888888888888888888888764433 4466777777888888888888888887766542 12344555
Q ss_pred HHHHHHhcCHHHHHHHHHHHhc
Q 004093 362 IRFLRRTEGVEAARKYFLDARK 383 (774)
Q Consensus 362 a~~~~r~~~~~~Ar~if~~al~ 383 (774)
+-.+...|+.++|..++-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 5566667777777777666553
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.40 E-value=0.0052 Score=60.41 Aligned_cols=81 Identities=9% Similarity=-0.002 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004093 358 HIQFIRFLRRTEGVEAARKYFLDARKSPNF---TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFL 434 (774)
Q Consensus 358 ~~~~a~~~~r~~~~~~Ar~if~~al~~~~~---~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l 434 (774)
+..++..+.+.|++++|...|+++++..+. ...++..++.+.... |+++.|..+|++++...|++...+..++..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASN-GEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344444444444444444444444432111 123444444443332 5555555555555555555554444444444
Q ss_pred HhcCC
Q 004093 435 SRLND 439 (774)
Q Consensus 435 ~~~gd 439 (774)
...++
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44443
No 176
>PRK11906 transcriptional regulator; Provisional
Probab=97.36 E-value=0.0097 Score=66.02 Aligned_cols=144 Identities=16% Similarity=0.048 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc
Q 004093 302 IDAAIKVFQRAL---KALPDSEMLRYAFAELEESR---------GAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE 369 (774)
Q Consensus 302 ~e~A~~v~erAl---~~~P~~~~l~~~~a~l~e~~---------g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~ 369 (774)
.+.|..+|.+|+ ...|.....+-..+..+... .+..+|...-+++++.++. .+.+....+...--.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 456777788888 66666655444333333221 1234555566666666655 3444444444333344
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHhcCChhHHHHHH
Q 004093 370 GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP--AYILEYADFLSRLNDDRNIRALF 447 (774)
Q Consensus 370 ~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~--~l~~~ya~~l~~~gd~~~Ar~lf 447 (774)
+.+.|...|++|+...++...+|...+.+.... |+.+.|+..+++++...|.-. .+...+++.+...+ .++|..+|
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~-G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHN-EKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 466666666666665555566666555554443 666666666666666665432 23344444444332 33344444
Q ss_pred H
Q 004093 448 E 448 (774)
Q Consensus 448 E 448 (774)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 3
No 177
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0029 Score=68.23 Aligned_cols=150 Identities=15% Similarity=-0.005 Sum_probs=119.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------------HHHHHHHHHHhCCHHHH
Q 004093 272 IFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEML------------RYAFAELEESRGAIAAA 339 (774)
Q Consensus 272 ~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l------------~~~~a~l~e~~g~~e~A 339 (774)
...=-..++.++.+.+..+--+.++..+++.+.|+..|+++++..|+.... |-.-++-..+.|++..|
T Consensus 189 ~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 189 QSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 333445566777777777777777778889999999999999999866432 33445555567999999
Q ss_pred HHHHHHHhcCCCCC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 004093 340 KKLYESLLTDSVNT---TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAG 416 (774)
Q Consensus 340 ~~iyek~l~~~~~~---~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~a 416 (774)
.++|..+|.+.|+. .+.+|...+....+.|+.++|..-.+.|++..+.....|+..|....-+ ++++.|++-|+.+
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l-e~~e~AV~d~~~a 347 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL-EKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999998863 3567788888888999999999999999998777778888877764444 7899999999999
Q ss_pred HHHcCC
Q 004093 417 LKRFMH 422 (774)
Q Consensus 417 l~~~p~ 422 (774)
++...+
T Consensus 348 ~q~~~s 353 (486)
T KOG0550|consen 348 MQLEKD 353 (486)
T ss_pred Hhhccc
Confidence 987654
No 178
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.33 E-value=0.86 Score=56.86 Aligned_cols=189 Identities=13% Similarity=0.029 Sum_probs=125.6
Q ss_pred chHHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHh
Q 004093 267 SNKRIIFTYEQCLMYLYH--------YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPD-----SEMLRYAFAELEESR 333 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~--------~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~-----~~~l~~~~a~l~e~~ 333 (774)
....+...+++++..... ...++...+..+...|++++|...+++++..... ....+...+.+....
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 345667777887775321 1223445677788889999999999999875331 123344567788889
Q ss_pred CCHHHHHHHHHHHhcCCCCC--cHH--HHHH--HHHHHHHhcCHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcC
Q 004093 334 GAIAAAKKLYESLLTDSVNT--TAL--AHIQ--FIRFLRRTEGVEAARKYFLDARKSPNFTY----HVYVAYALMAFCQD 403 (774)
Q Consensus 334 g~~e~A~~iyek~l~~~~~~--~~~--~~~~--~a~~~~r~~~~~~Ar~if~~al~~~~~~~----~~~i~~A~lE~~~~ 403 (774)
|+++.|...++++....... ... .... .+......|+.+.|..++.+......... ..+...+......
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~- 704 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL- 704 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc-
Confidence 99999999999987542211 111 1111 12334457889999999877665321111 1234455554454
Q ss_pred CCHHHHHHHHHHHHHHcC---C---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCc
Q 004093 404 KDPKLAHNVFEAGLKRFM---H---EPAYILEYADFLSRLNDDRNIRALFERALSSLPP 456 (774)
Q Consensus 404 gd~~~A~~ife~al~~~p---~---~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~ 456 (774)
|+.++|..+|+.++.... . .......++..+...|+.++|+..+++|+.....
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 899999999999998532 1 1234567788889999999999999999986653
No 179
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.32 E-value=0.0027 Score=59.05 Aligned_cols=105 Identities=15% Similarity=0.351 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcC---CCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhCC
Q 004093 272 IFTYEQCLMYLY---HYPDIWYDYATWNAKS----GSIDAAIKVFQRALKALPDS---------EMLRYAFAELEESRGA 335 (774)
Q Consensus 272 ~~~yeraL~~~p---~~~~iW~~ya~~l~~~----g~~e~A~~v~erAl~~~P~~---------~~l~~~~a~l~e~~g~ 335 (774)
...||+.|.... +--+.|..|+.+..++ +.......+++++++.+.++ ..+|+.||++..
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~---- 80 (126)
T PF08311_consen 5 RQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS---- 80 (126)
T ss_dssp HHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS----
T ss_pred HHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc----
Confidence 456778777544 5568999999999875 34566778999998876543 346667666432
Q ss_pred HHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 004093 336 IAAAKKLYESLLTDSV-NTTALAHIQFIRFLRRTEGVEAARKYFLDAR 382 (774)
Q Consensus 336 ~e~A~~iyek~l~~~~-~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al 382 (774)
.++++|+-+....- ...+..|+.|+.++...|++++|.+||++++
T Consensus 81 --~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 --DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp --HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 66777777665332 2256777788887777788888888777764
No 180
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=97.29 E-value=0.0025 Score=58.73 Aligned_cols=91 Identities=23% Similarity=0.436 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhc-CCCCCCchhchHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004093 245 WIAWKRLLTFEKG-NPQRIDTASSNKRIIFTYEQCLMYL---------YHYPDIWYDYATWNAKSGSIDAAIKVFQRALK 314 (774)
Q Consensus 245 ~~lW~~yi~~Ek~-n~~~~d~~~~~~r~~~~yeraL~~~---------p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~ 314 (774)
+..|..||.|... -|.+ +.......++++|+..+ |.+-.+|+.|+.+. +..+++|.-..+
T Consensus 22 L~~w~~yI~W~~~~~p~g----~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~ 91 (125)
T smart00777 22 LDLWLRYIKWTEENYPQG----GKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYS 91 (125)
T ss_pred hHHHHHHHHHHHHhCCCC----CchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHH
Confidence 6799999999874 3432 12345667899999864 33558899998765 235667777665
Q ss_pred h--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 315 A--LPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 315 ~--~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
. .-....+|..||.+++..|++.+|.++|+.
T Consensus 92 ~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 92 KGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4 235577888899999999999999988874
No 181
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.38 Score=51.32 Aligned_cols=86 Identities=16% Similarity=0.246 Sum_probs=54.3
Q ss_pred HHHcCCHHHHHHHHHHHHccC----CCHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHH--H
Q 004093 70 YMAVNNDDATKQLFSRCLLIC----LQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEY--I 143 (774)
Q Consensus 70 e~~~~n~~~a~~ifeRaL~~~----p~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~y--i 143 (774)
.+.+.++..|+.+++-.+... .+.++|..|..|... +.+.+..+|.++.+. +-....+|... .
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLg--------dY~~Al~~Y~~~~~~---~~~~~el~vnLAcc 100 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLG--------DYEEALNVYTFLMNK---DDAPAELGVNLACC 100 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhc--------cHHHHHHHHHHHhcc---CCCCcccchhHHHH
Confidence 345667777777777666442 356899999888754 246788888877762 22234566544 4
Q ss_pred HHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCc
Q 004093 144 TFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTH 177 (774)
Q Consensus 144 ~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~ 177 (774)
.|.. +.+.+|..+-.+|-+.|..
T Consensus 101 ~FyL-----------g~Y~eA~~~~~ka~k~pL~ 123 (557)
T KOG3785|consen 101 KFYL-----------GQYIEAKSIAEKAPKTPLC 123 (557)
T ss_pred HHHH-----------HHHHHHHHHHhhCCCChHH
Confidence 4432 4566777777777666643
No 182
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.23 E-value=0.0052 Score=68.01 Aligned_cols=70 Identities=17% Similarity=0.094 Sum_probs=65.7
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q 004093 281 YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEM---LRYAFAELEESRGAIAAAKKLYESLLTDS 350 (774)
Q Consensus 281 ~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~---l~~~~a~l~e~~g~~e~A~~iyek~l~~~ 350 (774)
..|.++..|++++..|...|++++|+..|++||..+|++.. .|+..+..+..+|++++|...|+++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999885 49999999999999999999999999963
No 183
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0055 Score=66.38 Aligned_cols=145 Identities=14% Similarity=0.109 Sum_probs=103.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc
Q 004093 290 YDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE 369 (774)
Q Consensus 290 ~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~ 369 (774)
-.-+..+.+.|++..|...|+||+........+- .++....-. + ...+++.++-.+...+
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~------------~ee~~~~~~--~------k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFD------------EEEQKKAEA--L------KLACHLNLAACYLKLK 271 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCC------------HHHHHHHHH--H------HHHHhhHHHHHHHhhh
Confidence 3446778889999999999999998654332111 011111111 0 1235666777777888
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCh-hHHHHHHH
Q 004093 370 GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDD-RNIRALFE 448 (774)
Q Consensus 370 ~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~-~~Ar~lfE 448 (774)
.+..|.....+++...+.+......-+...... ++++.|+..|+++++..|+|...-..++.+-.+..++ ++.+.+|.
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~-~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLAL-GEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999988777788888776654454 8999999999999999999888777777776666554 45588999
Q ss_pred HHHhcCC
Q 004093 449 RALSSLP 455 (774)
Q Consensus 449 raL~~~p 455 (774)
+.+...+
T Consensus 351 ~mF~k~~ 357 (397)
T KOG0543|consen 351 NMFAKLA 357 (397)
T ss_pred HHhhccc
Confidence 9988665
No 184
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.11 Score=53.39 Aligned_cols=169 Identities=13% Similarity=0.051 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q 004093 271 IIFTYEQCLMYLYHYPDIWYDY-ATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTD 349 (774)
Q Consensus 271 ~~~~yeraL~~~p~~~~iW~~y-a~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~ 349 (774)
+...+|..+...-.+..+|... +.++...+++++|.....+.. +.+..-.-..+..+...++-|++..+++.+.
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-----NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3456777776666666566655 778888999999988887732 2222222233444555677888888888877
Q ss_pred CCCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHH
Q 004093 350 SVNTT-ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL 428 (774)
Q Consensus 350 ~~~~~-~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~ 428 (774)
..+.. ..+-..|+.+..-.+.+..|.-+|+..-+..+.++.+....|.+-... +++++|..+++.+|.+.+++++++.
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~-~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL-GRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHh-cCHHHHHHHHHHHHhccCCCHHHHH
Confidence 65421 112234444555556688899999998886666788888777765554 8999999999999999999999888
Q ss_pred HHHHHHHhcCChhHHHH
Q 004093 429 EYADFLSRLNDDRNIRA 445 (774)
Q Consensus 429 ~ya~~l~~~gd~~~Ar~ 445 (774)
..+-.-...|...++..
T Consensus 246 Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTE 262 (299)
T ss_pred HHHHHHHHhCCChHHHH
Confidence 87777777777655443
No 185
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.20 E-value=0.0016 Score=53.83 Aligned_cols=61 Identities=23% Similarity=0.285 Sum_probs=54.8
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFA 327 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a 327 (774)
..+.+..++++++..+|+++.+|+.+|.++...|++++|++.|+++++.+|++.......+
T Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 10 DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999998877654443
No 186
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.17 E-value=0.0041 Score=56.78 Aligned_cols=95 Identities=22% Similarity=0.140 Sum_probs=83.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC---cHHHHHHHHHHHHHhc
Q 004093 293 ATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT---TALAHIQFIRFLRRTE 369 (774)
Q Consensus 293 a~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~---~~~~~~~~a~~~~r~~ 369 (774)
+..+.+.|+.+.|++.|.+++..+|+....+...+..+...|+.++|.+-++++++..... ...+|.+.+-+++..|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4456778999999999999999999999999999999999999999999999999865432 2468889999999999
Q ss_pred CHHHHHHHHHHHhcCCCC
Q 004093 370 GVEAARKYFLDARKSPNF 387 (774)
Q Consensus 370 ~~~~Ar~if~~al~~~~~ 387 (774)
+.+.||.-|+.|.+.+..
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 999999999999887654
No 187
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.12 E-value=0.00044 Score=46.92 Aligned_cols=28 Identities=25% Similarity=0.535 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHH
Q 004093 76 DDATKQLFSRCLLICLQVPLWRCYIRFI 103 (774)
Q Consensus 76 ~~~a~~ifeRaL~~~p~~~lW~~Yl~~~ 103 (774)
++.|+.||+|.+..+|++..|+.|++|+
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~WikyAkFE 30 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNWIKYAKFE 30 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHhh
Confidence 3444555555544444555555555444
No 188
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.12 E-value=0.036 Score=55.19 Aligned_cols=191 Identities=16% Similarity=0.161 Sum_probs=127.8
Q ss_pred HHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004093 252 LTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEE 331 (774)
Q Consensus 252 i~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e 331 (774)
+.||++.- .|..+...-++.-|.|+|.+.|.-++++--++.++...|+++.|.+.|...++..|...-.+...+.-.-
T Consensus 67 l~fERGvl--YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 67 LLFERGVL--YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHhcch--hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 34666531 1334555666788999999999999999999999999999999999999999999987655544443333
Q ss_pred HhCCHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHhcCHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHH
Q 004093 332 SRGAIAAAKKLYESLLTDSVNTTA-LAHIQFIRFLRRTEGVEAARK-YFLDARKSPNFTYHVYVAYALMAFCQDKDPKLA 409 (774)
Q Consensus 332 ~~g~~e~A~~iyek~l~~~~~~~~-~~~~~~a~~~~r~~~~~~Ar~-if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A 409 (774)
--|.+.-|.+-+.+..+.+|+++- .+|..+.. +.-+..+|+. +.+|+.+.....|-.++ .++.. |.+. -
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~i----V~~yL-gkiS-~ 215 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNI----VEFYL-GKIS-E 215 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHH----HHHHH-hhcc-H
Confidence 347788888888888877776532 35654432 3334555655 45677776544454433 34444 4443 2
Q ss_pred HHHHHHHHHHcCCCHHHH-------HHHHHHHHhcCChhHHHHHHHHHHhc
Q 004093 410 HNVFEAGLKRFMHEPAYI-------LEYADFLSRLNDDRNIRALFERALSS 453 (774)
Q Consensus 410 ~~ife~al~~~p~~~~l~-------~~ya~~l~~~gd~~~Ar~lfEraL~~ 453 (774)
..+++++..-..++..+. .-.+......|+.++|..+|.-|+..
T Consensus 216 e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 216 ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 345666655444544332 23345556789999999999999864
No 189
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.09 E-value=0.00065 Score=46.13 Aligned_cols=30 Identities=30% Similarity=0.537 Sum_probs=27.4
Q ss_pred ChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHH
Q 004093 37 PVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYM 71 (774)
Q Consensus 37 ~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~ 71 (774)
.+++||.+|||++..+|.. ..|++|+.+|.
T Consensus 2 E~dRAR~IyeR~v~~hp~~-----k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEV-----KNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCCc-----hHHHHHHHhhc
Confidence 5799999999999999986 89999999985
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.06 E-value=0.0077 Score=55.41 Aligned_cols=61 Identities=25% Similarity=0.227 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 004093 323 RYAFAELEESRGAIAAAKKLYESLLTDSVNT--TALAHIQFIRFLRRTEGVEAARKYFLDARK 383 (774)
Q Consensus 323 ~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~--~~~~~~~~a~~~~r~~~~~~Ar~if~~al~ 383 (774)
+|..|..+...|+.++|..+|++++...... ...+++.++..++..|++++|..+|++++.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555555555555555543221 123455555555555555555555555544
No 191
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.06 E-value=0.055 Score=54.74 Aligned_cols=54 Identities=20% Similarity=0.140 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHhcCCchh---------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc
Q 004093 440 DRNIRALFERALSSLPPEE---------------SIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRT 493 (774)
Q Consensus 440 ~~~Ar~lfEraL~~~p~e~---------------~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk~ 493 (774)
..+|...|+..+..+|... -..-=..-..|-.+.|....+..-.+.+++.+|+.
T Consensus 106 ~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t 174 (203)
T PF13525_consen 106 TRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDT 174 (203)
T ss_dssp HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC
Confidence 4566777777777666210 00001112455557888888888888888888864
No 192
>PRK15331 chaperone protein SicA; Provisional
Probab=97.05 E-value=0.006 Score=58.60 Aligned_cols=99 Identities=16% Similarity=0.002 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 366 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~ 366 (774)
+.-+.+|--+...|++++|..+|.-.+-..|.+...|+.+|..+...+++++|...|..+.....++ +...+..+.++.
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~p~f~agqC~l 116 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCccchHHHHHH
Confidence 3445666667789999999999999999999999999999999999999999999999888766553 344566677888
Q ss_pred HhcCHHHHHHHHHHHhcCCC
Q 004093 367 RTEGVEAARKYFLDARKSPN 386 (774)
Q Consensus 367 r~~~~~~Ar~if~~al~~~~ 386 (774)
..++.+.|+..|+.++..+.
T Consensus 117 ~l~~~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 117 LMRKAAKARQCFELVNERTE 136 (165)
T ss_pred HhCCHHHHHHHHHHHHhCcc
Confidence 88999999999999988543
No 193
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.05 E-value=0.021 Score=63.44 Aligned_cols=157 Identities=18% Similarity=0.151 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----H---------------------HHH
Q 004093 269 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS----E---------------------MLR 323 (774)
Q Consensus 269 ~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~----~---------------------~l~ 323 (774)
+|+ .+=.+||.++|+.++.|+.+++ +....+.+|.++|++|++....+ . -+.
T Consensus 186 aRI-kaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~K 262 (539)
T PF04184_consen 186 ARI-KAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAK 262 (539)
T ss_pred HHH-HHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhH
Confidence 444 6677999999999999988764 34456788999999998753211 0 011
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHh
Q 004093 324 YAFAELEESRGAIAAAKKLYESLLTDSVNT-TALAHIQFIRFLRRTEGVEAARKYFLDARKS-PNFTYHVYVAYALMAFC 401 (774)
Q Consensus 324 ~~~a~l~e~~g~~e~A~~iyek~l~~~~~~-~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~-~~~~~~~~i~~A~lE~~ 401 (774)
..+|....+.|+.++|.+.|..+++..|.. .-.++..++..+...+.+.++..++.+--+. -+.+.......|.+.++
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 245556666777777777777777665542 2346666777777777777777777775322 11223333333554443
Q ss_pred cCCCH---------------HHHHHHHHHHHHHcCCCHHHHH
Q 004093 402 QDKDP---------------KLAHNVFEAGLKRFMHEPAYIL 428 (774)
Q Consensus 402 ~~gd~---------------~~A~~ife~al~~~p~~~~l~~ 428 (774)
.-+|. ..|.+...+|++.+|+.+.+++
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 22221 2345566666666777666553
No 194
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0091 Score=64.75 Aligned_cols=144 Identities=16% Similarity=0.063 Sum_probs=100.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCC
Q 004093 326 FAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKD 405 (774)
Q Consensus 326 ~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd 405 (774)
.+..+.+.|++..|..-|++++....... .-+.++..+.. .+ ...++++.|...... ++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~-------------~~~~ee~~~~~-~~------k~~~~lNlA~c~lKl-~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRR-------------SFDEEEQKKAE-AL------KLACHLNLAACYLKL-KE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccc-------------cCCHHHHHHHH-HH------HHHHhhHHHHHHHhh-hh
Confidence 45666778889999999999876432100 00111111111 11 134556666654454 88
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHH-HHHHHHH
Q 004093 406 PKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLD-STLKVEQ 484 (774)
Q Consensus 406 ~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~-~i~kv~~ 484 (774)
+..|+...++.|...|+|..-+..-+..+..+|+++.||..|+++++..|. +..+-...+..-.++-... .-.+.++
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~--Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS--NKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998889999999999999999999999999884 3455555555555555443 4467888
Q ss_pred HHHHHccc
Q 004093 485 RRKEALSR 492 (774)
Q Consensus 485 R~~~~~pk 492 (774)
+|.....+
T Consensus 351 ~mF~k~~~ 358 (397)
T KOG0543|consen 351 NMFAKLAE 358 (397)
T ss_pred HHhhcccc
Confidence 88888873
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.97 E-value=0.014 Score=56.65 Aligned_cols=116 Identities=18% Similarity=0.190 Sum_probs=89.2
Q ss_pred chHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLM-YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP--DSEMLRYAFAELEESRGAIAAAKKLY 343 (774)
Q Consensus 267 ~~~r~~~~yeraL~-~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P--~~~~l~~~~a~l~e~~g~~e~A~~iy 343 (774)
....+...|++++. .+.+++.+.+.+++.+...++...|...+++..+.+| .+++-.+.|+..+...|.+.+|+..|
T Consensus 104 r~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesaf 183 (251)
T COG4700 104 RYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAF 183 (251)
T ss_pred hhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHH
Confidence 34556678888887 6778888888888888888888888888888888877 34555667888888888888888888
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHH----HHHHHHhcC
Q 004093 344 ESLLTDSVNTTALAHIQFIRFLRRTEGVEAAR----KYFLDARKS 384 (774)
Q Consensus 344 ek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar----~if~~al~~ 384 (774)
+.++...|. ...-+.|+.|+..+|+.++++ .+++++.++
T Consensus 184 e~a~~~ypg--~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~ 226 (251)
T COG4700 184 EVAISYYPG--PQARIYYAEMLAKQGRLREANAQYVAVVDTAKRS 226 (251)
T ss_pred HHHHHhCCC--HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence 888888876 567788888888888766554 445555444
No 196
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.88 E-value=0.14 Score=63.94 Aligned_cols=206 Identities=15% Similarity=0.117 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C----HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc-
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPD-----S----EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT- 354 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~-----~----~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~- 354 (774)
++.+-...+..+...|++++|...++++....+. . ..+....+.+....|++++|...+++++...+...
T Consensus 408 ~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (903)
T PRK04841 408 NPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY 487 (903)
T ss_pred CcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH
Confidence 3444555666667788999999999988775432 1 12233445666678999999999999987433211
Q ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC----CC--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC---
Q 004093 355 ---ALAHIQFIRFLRRTEGVEAARKYFLDARKSPN----FT--YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH--- 422 (774)
Q Consensus 355 ---~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~----~~--~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~--- 422 (774)
..++...+..+...|+++.|+..+.+++.... .. ..++...+.+.+. .|+.+.|...+++++.....
T Consensus 488 ~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 488 YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA-QGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhcc
Confidence 12344556667778999999999999875311 11 2233444555555 49999999999999885221
Q ss_pred --CH---HHHHHHHHHHHhcCChhHHHHHHHHHHhcCC---chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 423 --EP---AYILEYADFLSRLNDDRNIRALFERALSSLP---PEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 423 --~~---~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p---~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
.+ ..+...+..+...|+.++|+..+++++.... .......+..........|+.+.+.....++.....
T Consensus 567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 11 1233456667778999999999999987432 112233333345566678999888888888876654
No 197
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.88 E-value=0.026 Score=53.07 Aligned_cols=122 Identities=17% Similarity=0.172 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQF 361 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~---~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~ 361 (774)
.+..++.-|.-..+.|++++|++.|+......|-+ ....+.++..+...++++.|...|++.|+.+|.+.-.-|..|
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45667777888889999999999999999998854 445555666677889999999999999999997432233334
Q ss_pred HHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCH
Q 004093 362 IRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 424 (774)
Q Consensus 362 a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~ 424 (774)
+.-+.... .....|........ -.+....|+.-|+..+..+|++.
T Consensus 89 ~~gL~~~~---~~~~~~~~~~~~dr---------------D~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 89 MRGLSYYE---QDEGSLQSFFRSDR---------------DPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHH---HhhhHHhhhccccc---------------CcHHHHHHHHHHHHHHHHCcCCh
Confidence 33322221 11122222211111 12345678888899999999874
No 198
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.87 E-value=0.25 Score=51.44 Aligned_cols=167 Identities=14% Similarity=0.073 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcH--HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC---HHHHH
Q 004093 319 SEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTA--LAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT---YHVYV 393 (774)
Q Consensus 319 ~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~--~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~---~~~~i 393 (774)
+..-++.-|.-....|++++|...|++++...|.... .+.+.++..+.+.++++.|...|++.++..+.+ ..++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 4555666777777889999999999999999887421 244566677788999999999999999864332 33344
Q ss_pred HHHHHHHhc--------------CCCH---HHHHHHHHHHHHHcCCCHH-----HH------------HHHHHHHHhcCC
Q 004093 394 AYALMAFCQ--------------DKDP---KLAHNVFEAGLKRFMHEPA-----YI------------LEYADFLSRLND 439 (774)
Q Consensus 394 ~~A~lE~~~--------------~gd~---~~A~~ife~al~~~p~~~~-----l~------------~~ya~~l~~~gd 439 (774)
..+...+.. ..|. ..|.+.|+..++.+|++.- .. +.-+.|+.+.|.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 333321111 1122 4577899999999998631 11 122355666788
Q ss_pred hhHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 440 DRNIRALFERALSSLPPEES-IEVWKRFTQFEQMYGDLDSTLKVEQR 485 (774)
Q Consensus 440 ~~~Ar~lfEraL~~~p~e~~-~~lw~~~~~fE~~~Gd~~~i~kv~~R 485 (774)
+.-|..-|+.+++..|.... .+.......--...|..+.+.++.+.
T Consensus 191 y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 191 YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 88888888888888774322 22222233333356766666554443
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.84 E-value=0.12 Score=50.48 Aligned_cols=98 Identities=21% Similarity=0.200 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHH
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALK-ALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT-TALAHIQFIRF 364 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~-~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~-~~~~~~~~a~~ 364 (774)
.-.+.++..+.+.|+..+|...|++++. .+-++..+.+.++......+++..|...++++.+.+|.. .+.-.+.|++.
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 3445566666666777777777777665 344555555566666666666666666666666655421 12233445555
Q ss_pred HHHhcCHHHHHHHHHHHhcC
Q 004093 365 LRRTEGVEAARKYFLDARKS 384 (774)
Q Consensus 365 ~~r~~~~~~Ar~if~~al~~ 384 (774)
+.-.|....|+..|+.++..
T Consensus 170 laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 170 LAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHhcCCchhHHHHHHHHHHh
Confidence 55555555555555555543
No 200
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.82 E-value=0.0013 Score=46.12 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 004093 274 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAI 306 (774)
Q Consensus 274 ~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~ 306 (774)
+|+++|+.+|++++.|+.++.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 377888888888888888888888888887775
No 201
>PRK15331 chaperone protein SicA; Provisional
Probab=96.78 E-value=0.039 Score=53.15 Aligned_cols=94 Identities=9% Similarity=0.030 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 004093 359 IQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLN 438 (774)
Q Consensus 359 ~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~g 438 (774)
..++.-...+|+++.|..+|.-+.-......+.|+.+|..... .|+++.|...|..+....+++|.....-+++++.+|
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 4445455567888888888887776666668888888776444 488889999998888888888887778888888899
Q ss_pred ChhHHHHHHHHHHhc
Q 004093 439 DDRNIRALFERALSS 453 (774)
Q Consensus 439 d~~~Ar~lfEraL~~ 453 (774)
+.++|+..|+.++..
T Consensus 120 ~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 KAAKARQCFELVNER 134 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999999884
No 202
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.76 E-value=0.58 Score=55.58 Aligned_cols=219 Identities=13% Similarity=0.060 Sum_probs=139.1
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
.++.+..-..+.++..|+..-+-..-|-.+.+.|+.++|..+++.--..-+++....-.+-.++...++.++|..+|+++
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~ 103 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERA 103 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45556666777788888887777777888899999999996665544444555555556677888899999999999999
Q ss_pred hcCCCCCcHHHHHHHHHHHHHhcCHHH----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--------CHHHHHHHHH
Q 004093 347 LTDSVNTTALAHIQFIRFLRRTEGVEA----ARKYFLDARKSPNFTYHVYVAYALMAFCQDK--------DPKLAHNVFE 414 (774)
Q Consensus 347 l~~~~~~~~~~~~~~a~~~~r~~~~~~----Ar~if~~al~~~~~~~~~~i~~A~lE~~~~g--------d~~~A~~ife 414 (774)
+..+|+ . ....+|...+.|-+.+.+ |.++|+..-+.+ +-.|.....+.-...+ -..-|.+.++
T Consensus 104 ~~~~P~-e-ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~---yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 104 NQKYPS-E-ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA---YYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HhhCCc-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc---chHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 999997 3 333344444455555544 555555332222 3333332222111100 1233566666
Q ss_pred HHHHHcC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 415 AGLKRFM--HEPAYILEYADFLSRLNDDRNIRALFERALS-SLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 415 ~al~~~p--~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~-~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
..++..+ .+..=..-|...+..+|.+.+|..++..-+. ++++. ...+-+.-+++-...+.+.....+..|...+-+
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~-~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSA-NLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 6666541 2222344677788889999999999966554 44422 233444456666677888888888888777765
No 203
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.70 E-value=0.035 Score=57.52 Aligned_cols=99 Identities=21% Similarity=0.140 Sum_probs=69.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHH
Q 004093 291 DYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT--TALAHIQFIRFL 365 (774)
Q Consensus 291 ~ya~~l~~~g~~e~A~~v~erAl~~~P~~---~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~--~~~~~~~~a~~~ 365 (774)
+.|-=+...|++..|.+.|..-++..|++ ...+|-+++.+...|++++|..+|..+++..|.. -+.+.+.++..+
T Consensus 146 ~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~ 225 (262)
T COG1729 146 NAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSL 225 (262)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 33334556777888888888888888866 3344457777778888888888888888776653 245677777777
Q ss_pred HHhcCHHHHHHHHHHHhcCCCCCH
Q 004093 366 RRTEGVEAARKYFLDARKSPNFTY 389 (774)
Q Consensus 366 ~r~~~~~~Ar~if~~al~~~~~~~ 389 (774)
.+.++.+.|+.+|.++++.-+.+.
T Consensus 226 ~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 226 GRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHhcCHHHHHHHHHHHHHHCCCCH
Confidence 777777777777777776544433
No 204
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.63 E-value=0.044 Score=56.82 Aligned_cols=100 Identities=16% Similarity=0.035 Sum_probs=78.6
Q ss_pred HHHHHHhCCHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHh
Q 004093 327 AELEESRGAIAAAKKLYESLLTDSVNT--TALAHIQFIRFLRRTEGVEAARKYFLDARKSPN---FTYHVYVAYALMAFC 401 (774)
Q Consensus 327 a~l~e~~g~~e~A~~iyek~l~~~~~~--~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~---~~~~~~i~~A~lE~~ 401 (774)
|.-+...|++..|...|...++..|+. ...+++-+++....+|+++.|-.+|.++.+.-+ ..++..+..+.....
T Consensus 148 A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~ 227 (262)
T COG1729 148 ALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR 227 (262)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 333446788999999999999998863 235677788888889999999999998887422 247888888887777
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCHHHH
Q 004093 402 QDKDPKLAHNVFEAGLKRFMHEPAYI 427 (774)
Q Consensus 402 ~~gd~~~A~~ife~al~~~p~~~~l~ 427 (774)
. |+.++|+.+|+..++.+|+...-.
T Consensus 228 l-~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 228 L-GNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred h-cCHHHHHHHHHHHHHHCCCCHHHH
Confidence 6 888999999999999998876543
No 205
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.60 E-value=0.0035 Score=42.70 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=22.4
Q ss_pred ChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHH
Q 004093 37 PVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYM 71 (774)
Q Consensus 37 ~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~ 71 (774)
+++.|+.+|++++..+|.+ ..+|..|++++.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~----~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKS----VELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCC----hHHHHHHHHHHh
Confidence 3567777777777777777 777777777664
No 206
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.60 E-value=0.42 Score=49.33 Aligned_cols=189 Identities=15% Similarity=0.068 Sum_probs=111.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQF 361 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~---~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~ 361 (774)
.++.|++=+.-..+.|++++|...|+......|.+ ....+..+-.+.+.++++.|....++.+...|.+...-|..|
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 45677777777889999999999999999988865 344455555566789999999999999999997655677777
Q ss_pred HHHHHHhc-------C---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 004093 362 IRFLRRTE-------G---VEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYA 431 (774)
Q Consensus 362 a~~~~r~~-------~---~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya 431 (774)
++.+...- + ...|..-|+..+..-+.+.-+--.-+.|. .+...+ ...=..-+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~------------~~~d~L------A~~Em~Ia 174 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIV------------KLNDAL------AGHEMAIA 174 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHH------------HHHHHH------HHHHHHHH
Confidence 77655211 1 11223333333332211100000000000 000000 01112345
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 432 DFLSRLNDDRNIRALFERALSSLPPEE-SIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 432 ~~l~~~gd~~~Ar~lfEraL~~~p~e~-~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
.|+.+.|.+..|..-++++++..+.+. ..+-...+...-...|-.+.+.+..+-+-.-.|
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 677888999999999999999876432 233333333333357765555555444444444
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.61 Score=48.03 Aligned_cols=163 Identities=15% Similarity=0.091 Sum_probs=119.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC----CC--CHHHHHHHHHH
Q 004093 325 AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP----NF--TYHVYVAYALM 398 (774)
Q Consensus 325 ~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~----~~--~~~~~i~~A~l 398 (774)
.|+.++...|.+.-....|.+.++.++...+.+-..++++..+.|+++.|...|++.-+.. .. .--+.-+.|.+
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 4566666677888888899999998866567788899999999999999999999765421 12 22333344443
Q ss_pred HHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHhCCH
Q 004093 399 AFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPE--ESIEVWKRFTQFEQMYGDL 476 (774)
Q Consensus 399 E~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e--~~~~lw~~~~~fE~~~Gd~ 476 (774)
+-..+++..|...|.+.+..++.++.....-+-++.-.|+...|.+..|.++...|.. ....+.+.--.+|..|-+.
T Consensus 262 -~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~Ys~~ 340 (366)
T KOG2796|consen 262 -HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELEYSRS 340 (366)
T ss_pred -eecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHhhhh
Confidence 3335889999999999999999999888888888888999999999999999998832 1223444445567777665
Q ss_pred HHHHHHHHHHHH
Q 004093 477 DSTLKVEQRRKE 488 (774)
Q Consensus 477 ~~i~kv~~R~~~ 488 (774)
.+.+.....++.
T Consensus 341 ~~~k~~l~~~ia 352 (366)
T KOG2796|consen 341 MQKKQALLEAVA 352 (366)
T ss_pred hhHHHHHHHHHh
Confidence 555444444443
No 208
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.47 E-value=0.0056 Score=41.66 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004093 405 DPKLAHNVFEAGLKRFMHEPAYILEYADFLS 435 (774)
Q Consensus 405 d~~~A~~ife~al~~~p~~~~l~~~ya~~l~ 435 (774)
+.+.|+.+|+++++.+|.++.+|..|++|+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 4556666666666666666666666666653
No 209
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.51 Score=48.75 Aligned_cols=192 Identities=14% Similarity=0.038 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 004093 288 IWYDYATWNAKSGSIDA-AIKVFQRALKALPDSE-MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 365 (774)
Q Consensus 288 iW~~ya~~l~~~g~~e~-A~~v~erAl~~~P~~~-~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~ 365 (774)
....++.++..-++.++ ..++++......-.+. .....-+.++...+++++|.....+... ..+...=.++.
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~------lE~~Al~VqI~ 147 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN------LEAAALNVQIL 147 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch------HHHHHHHHHHH
Confidence 33455666665555443 3455565555544444 4445667788888999999988877332 22333333455
Q ss_pred HHhcCHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCh
Q 004093 366 RRTEGVEAARKYFLDARKSPNFT-----YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDD 440 (774)
Q Consensus 366 ~r~~~~~~Ar~if~~al~~~~~~-----~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~ 440 (774)
.+...++-|++..+++.+..... ...|+.+|. . ...+..|.-||+..-.+++-.+.+....+.+.+.++++
T Consensus 148 lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~---g-gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLAT---G-GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhc---c-chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCH
Confidence 66777889999999988765431 445555543 1 24578899999999998888889999999999999999
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHcc
Q 004093 441 RNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDL-DSTLKVEQRRKEALS 491 (774)
Q Consensus 441 ~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~-~~i~kv~~R~~~~~p 491 (774)
++|..+++.+|.+.+ +..+.....+..-...|.. +...+...+....-|
T Consensus 224 eeAe~lL~eaL~kd~--~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 224 EEAESLLEEALDKDA--KDPETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 999999999999876 3455566666666667743 444555555554444
No 210
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.38 E-value=0.62 Score=50.45 Aligned_cols=172 Identities=19% Similarity=0.101 Sum_probs=82.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC
Q 004093 292 YATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEE-SRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEG 370 (774)
Q Consensus 292 ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e-~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~ 370 (774)
-++.-+-.|+++.|++-|+-.+. +|+-..+-+.-..++. ..|..+.|+..-+++-..-|. ..-+|...+.-..+.|+
T Consensus 126 eAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gd 203 (531)
T COG3898 126 EAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGD 203 (531)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCC
Confidence 34444445666666666655443 3433322211111111 236666666666666555543 22334444444445566
Q ss_pred HHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHH
Q 004093 371 VEAARKYFLDARKSPNF-------TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNI 443 (774)
Q Consensus 371 ~~~Ar~if~~al~~~~~-------~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~A 443 (774)
++.|.++.+..+...-. .--+.+..-.++. ..-|...|+..-..++|..|+-..-...-+..+.+.|+..++
T Consensus 204 Wd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 204 WDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred hHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhh
Confidence 66666666544331100 0112221111111 134555666666666666555433333445555666666666
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHH
Q 004093 444 RALFERALSSLPPEESIEVWKRFTQF 469 (774)
Q Consensus 444 r~lfEraL~~~p~e~~~~lw~~~~~f 469 (774)
-.++|.+-+..| +..||..|...
T Consensus 283 ~~ilE~aWK~eP---HP~ia~lY~~a 305 (531)
T COG3898 283 SKILETAWKAEP---HPDIALLYVRA 305 (531)
T ss_pred hhHHHHHHhcCC---ChHHHHHHHHh
Confidence 666666666555 45666666544
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.37 E-value=0.41 Score=52.59 Aligned_cols=169 Identities=13% Similarity=0.077 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHhcCCCCCcHHH
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKA----LPDSEMLRYAFAELEES---RGAIAAAKKLYESLLTDSVNTTALA 357 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~----~P~~~~l~~~~a~l~e~---~g~~e~A~~iyek~l~~~~~~~~~~ 357 (774)
++++-+++..-+-...+++..+++.+..-.. .++...+.+.||-.+.+ .|+.++|..++..++.......+.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4455555544455556677777776665443 34456666777777776 5888888888888655444445666
Q ss_pred HHHHHHHHHH---------hcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCC-H---HHHHHHH----HHHHHH-
Q 004093 358 HIQFIRFLRR---------TEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKD-P---KLAHNVF----EAGLKR- 419 (774)
Q Consensus 358 ~~~~a~~~~r---------~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd-~---~~A~~if----e~al~~- 419 (774)
+...++.+.. .+..++|...|.++-...+. ...=|++|.+.... |. . .+.++|- ....++
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~-g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLA-GHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHc-CCcccchHHHHHHHHHHHHHHHhhc
Confidence 6666665543 23478888889988887654 44445555543332 32 2 2233333 111111
Q ss_pred -cCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 420 -FMHEPAYIL--EYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 420 -~p~~~~l~~--~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
.....++|. .++....-.||+++|.+.+++++...|
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 123456774 566666678999999999999998755
No 212
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.30 E-value=0.031 Score=54.36 Aligned_cols=87 Identities=15% Similarity=0.082 Sum_probs=61.2
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGS----------IDAAIKVFQRALKALPDSEMLRYAFAELEESR-- 333 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~----------~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~-- 333 (774)
..++.++..|+.....+|++.+.++.++..|.+..+ +++|+.-|+.||..+|+.....+.++..+..+
T Consensus 5 ~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 5 LFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 345556788899999999999999999988876532 56788888888999999877666666655543
Q ss_pred ---------CCHHHHHHHHHHHhcCCCC
Q 004093 334 ---------GAIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 334 ---------g~~e~A~~iyek~l~~~~~ 352 (774)
..+++|...|+++....|.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2356777777777777776
No 213
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.29 E-value=0.34 Score=54.24 Aligned_cols=142 Identities=21% Similarity=0.197 Sum_probs=94.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHH
Q 004093 295 WNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAA 374 (774)
Q Consensus 295 ~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~A 374 (774)
--++..+...-++.-.+|++.+|++...|+.+| ++....+.++..+|+++++.... .+....+....+.
T Consensus 177 ~AWRERnp~aRIkaA~eALei~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~-----~lg~s~~~~~~g~---- 245 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEINPDCADAYILLA--EEEASTIVEAEELLRQAVKAGEA-----SLGKSQFLQHHGH---- 245 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHH-----hhchhhhhhcccc----
Confidence 335667888888999999999999998887666 44556788999999999875432 1111111111111
Q ss_pred HHHHHHHhcCCCCCHHHHHH--HHHHHHhcCCCHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004093 375 RKYFLDARKSPNFTYHVYVA--YALMAFCQDKDPKLAHNVFEAGLKRFMH--EPAYILEYADFLSRLNDDRNIRALFERA 450 (774)
Q Consensus 375 r~if~~al~~~~~~~~~~i~--~A~lE~~~~gd~~~A~~ife~al~~~p~--~~~l~~~ya~~l~~~gd~~~Ar~lfEra 450 (774)
+-.+......+..+|+. +|...+.. |..++|++.|...++.+|. +..+....+..++.++.+.++..++.+-
T Consensus 246 ---~~e~~~~Rdt~~~~y~KrRLAmCarkl-Gr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 246 ---FWEAWHRRDTNVLVYAKRRLAMCARKL-GRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred ---hhhhhhccccchhhhhHHHHHHHHHHh-CChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 11111111222333443 45555565 9999999999999998875 3446677888899999999999988885
Q ss_pred H
Q 004093 451 L 451 (774)
Q Consensus 451 L 451 (774)
=
T Consensus 322 d 322 (539)
T PF04184_consen 322 D 322 (539)
T ss_pred c
Confidence 3
No 214
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.57 Score=47.80 Aligned_cols=187 Identities=13% Similarity=0.050 Sum_probs=92.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------HHHHHHHHhCCHHHHHHHHHHHhcCCC----CCcHHHHHHHHHH
Q 004093 295 WNAKSGSIDAAIKVFQRALKALPDSEMLRY------AFAELEESRGAIAAAKKLYESLLTDSV----NTTALAHIQFIRF 364 (774)
Q Consensus 295 ~l~~~g~~e~A~~v~erAl~~~P~~~~l~~------~~a~l~e~~g~~e~A~~iyek~l~~~~----~~~~~~~~~~a~~ 364 (774)
.+-...++++|...+.+|++..-++..+|. .-+.+......+.++..+|+++..... .+.+..-+.-+.-
T Consensus 40 afRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 40 AFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAK 119 (308)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 333445667777777777765444444332 222333334556677777777664321 1111111222222
Q ss_pred HHHhcCHHHHHHHHHHHhcCC----C--CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH----H--HcCCCHHHHHHHHH
Q 004093 365 LRRTEGVEAARKYFLDARKSP----N--FTYHVYVAYALMAFCQDKDPKLAHNVFEAGL----K--RFMHEPAYILEYAD 432 (774)
Q Consensus 365 ~~r~~~~~~Ar~if~~al~~~----~--~~~~~~i~~A~lE~~~~gd~~~A~~ife~al----~--~~p~~~~l~~~ya~ 432 (774)
.....+.+.|.++|++++..- + ...+.+-..+.+..+. +.+++|-..|.+-. + .+++....+...+-
T Consensus 120 ~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl-~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~il 198 (308)
T KOG1585|consen 120 ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL-EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAIL 198 (308)
T ss_pred HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh-HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHH
Confidence 233456777888888776421 1 1133333344433333 33333333332211 1 23333344445555
Q ss_pred HHHhcCChhHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004093 433 FLSRLNDDRNIRALFERALSS---LPPEESIEVWKRFTQFEQMYGDLDSTLKVEQ 484 (774)
Q Consensus 433 ~l~~~gd~~~Ar~lfEraL~~---~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~ 484 (774)
.++..+|+..|..+|...-+. +.+++ ....+..+.+- .-||.+.+.+|..
T Consensus 199 v~L~~~Dyv~aekc~r~~~qip~f~~sed-~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 199 VYLYAHDYVQAEKCYRDCSQIPAFLKSED-SRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHhhHHHHHHHHHHhcchhcCccccChHH-HHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 566667888888888886652 22333 33334444433 4688877776654
No 215
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.18 E-value=3.7 Score=47.80 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH------HH----hCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q 004093 286 PDIWYDYATWNAKSGSIDAAIKVFQRA------LK----ALPDS-EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT 354 (774)
Q Consensus 286 ~~iW~~ya~~l~~~g~~e~A~~v~erA------l~----~~P~~-~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~ 354 (774)
.+++-..+.++++..++++|.+.|.++ ++ .+|.. ..|-..|++-++..|+++.|..-|-.+
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea-------- 732 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA-------- 732 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh--------
Confidence 466777777888888888888877654 33 24533 445567788888888888777666332
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 004093 355 ALAHIQFIRFLRRTEGVEAARKYFLDAR 382 (774)
Q Consensus 355 ~~~~~~~a~~~~r~~~~~~Ar~if~~al 382 (774)
.-.+.-+....+...+++|..++....
T Consensus 733 -~~~~kaieaai~akew~kai~ildniq 759 (1636)
T KOG3616|consen 733 -NCLIKAIEAAIGAKEWKKAISILDNIQ 759 (1636)
T ss_pred -hhHHHHHHHHhhhhhhhhhHhHHHHhh
Confidence 112333445555666667766666443
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.16 E-value=0.0077 Score=50.51 Aligned_cols=63 Identities=21% Similarity=0.268 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 004093 286 PDIWYDYATWNAKSGSIDAAIKVFQRALKA---LPDS----EMLRYAFAELEESRGAIAAAKKLYESLLT 348 (774)
Q Consensus 286 ~~iW~~ya~~l~~~g~~e~A~~v~erAl~~---~P~~----~~l~~~~a~l~e~~g~~e~A~~iyek~l~ 348 (774)
..++..++..+...|++++|+..|++++.. .+.+ ...+..++.++...|++++|.+.|+++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456677777777777777777777777754 2221 23455666777777777777777777665
No 217
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.11 E-value=4 Score=47.55 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=23.3
Q ss_pred HHHhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCC
Q 004093 30 ANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNN 75 (774)
Q Consensus 30 ~~~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n 75 (774)
...+..+++++|..++|. ++.-|.. ...|+..+++.+..||
T Consensus 452 gaaid~~df~ra~afles-~~~~~da----~amw~~laelale~~n 492 (1636)
T KOG3616|consen 452 GAAIDDGDFDRATAFLES-LEMGPDA----EAMWIRLAELALEAGN 492 (1636)
T ss_pred ccccccCchHHHHHHHHh-hccCccH----HHHHHHHHHHHHHhcc
Confidence 334445566666666664 3455666 6666666666555444
No 218
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.11 E-value=0.082 Score=52.10 Aligned_cols=92 Identities=16% Similarity=0.028 Sum_probs=61.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc
Q 004093 295 WNAKSGSIDAAIKVFQRALKALPDSE-----MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE 369 (774)
Q Consensus 295 ~l~~~g~~e~A~~v~erAl~~~P~~~-----~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~ 369 (774)
-+..+|++++|..-|.+||..||... .++...|.....++..+.|..--.++|+.+|. ...+....+..+...+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 34566777777777777777777542 34445555666667777777777777777764 4455556666666667
Q ss_pred CHHHHHHHHHHHhcCCCC
Q 004093 370 GVEAARKYFLDARKSPNF 387 (774)
Q Consensus 370 ~~~~Ar~if~~al~~~~~ 387 (774)
.++.|..-|++.+...+.
T Consensus 183 k~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPS 200 (271)
T ss_pred hHHHHHHHHHHHHHhCcc
Confidence 777777777777765544
No 219
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.03 E-value=0.015 Score=43.14 Aligned_cols=39 Identities=15% Similarity=0.178 Sum_probs=18.3
Q ss_pred HHHHHHHHh-ccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHH
Q 004093 25 TAEILANSA-LHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYV 67 (774)
Q Consensus 25 ~W~~l~~~~-~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~ 67 (774)
+|..+++.+ +.+++++|+.+|+++++.+|++ ...|..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~----~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD----PEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC----HHHHHHhh
Confidence 344444422 2344555555555555555555 55554443
No 220
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.00 E-value=0.097 Score=48.35 Aligned_cols=103 Identities=17% Similarity=0.316 Sum_probs=66.0
Q ss_pred HHHHHHHHHh---cCCCHHHHHHHHHHHHHc---C-CHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhCC
Q 004093 272 IFTYEQCLMY---LYHYPDIWYDYATWNAKS---G-SIDAAIKVFQRALKALPDS---------EMLRYAFAELEESRGA 335 (774)
Q Consensus 272 ~~~yeraL~~---~p~~~~iW~~ya~~l~~~---g-~~e~A~~v~erAl~~~P~~---------~~l~~~~a~l~e~~g~ 335 (774)
+..|++.|.. ..+--++|..|+.|...+ | .-..-..+++|+++.+-++ ..+|+.|+++.
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~----- 79 (125)
T smart00777 5 RQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC----- 79 (125)
T ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc-----
Confidence 3457777632 223458999999998863 2 3445677888888764322 35677777653
Q ss_pred HHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004093 336 IAAAKKLYESLLTDSVN-TTALAHIQFIRFLRRTEGVEAARKYFLD 380 (774)
Q Consensus 336 ~e~A~~iyek~l~~~~~-~~~~~~~~~a~~~~r~~~~~~Ar~if~~ 380 (774)
++.+++|+-+....-. ..+..|..|+.++...|++.+|.+||+.
T Consensus 80 -~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 -DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred -CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3356677766654432 1356777777777777777777777764
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.99 E-value=0.029 Score=62.21 Aligned_cols=68 Identities=18% Similarity=0.074 Sum_probs=62.7
Q ss_pred CCCCCHHHHHHHHHHh-ccCChhhHHHHHHHHHHhCCCCCcccHHH---HHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004093 18 ADKYNVETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAVSFIAKF---WKQYVEAYMAVNNDDATKQLFSRCLLI 89 (774)
Q Consensus 18 ~nP~d~~~W~~l~~~~-~~~~i~~Ar~~yeral~~~P~~~~~~~~~---W~~y~~~e~~~~n~~~a~~ifeRaL~~ 89 (774)
.+|.+.++|..++..+ ..+++++|...|+++|++.|+. ... |+..+..+..+|++++|.+.|++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~----aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP----DEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6999999999998855 5578999999999999999999 855 999999999999999999999999986
No 222
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.83 E-value=0.023 Score=39.12 Aligned_cols=34 Identities=26% Similarity=0.536 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004093 286 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS 319 (774)
Q Consensus 286 ~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~ 319 (774)
+++|+.++..+...|++++|++.|+++++.+|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4688999999999999999999999999998864
No 223
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.67 E-value=0.013 Score=40.96 Aligned_cols=34 Identities=12% Similarity=0.335 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHH
Q 004093 44 IYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQ 81 (774)
Q Consensus 44 ~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ 81 (774)
+|+++++.+|++ ...|..++.++...|++++|++
T Consensus 1 ~y~kAie~~P~n----~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN----AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC----HHHHHHHHHHHHHCcCHHhhcC
Confidence 489999999999 9999999999999999998863
No 224
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.57 E-value=0.14 Score=47.08 Aligned_cols=88 Identities=19% Similarity=0.128 Sum_probs=68.3
Q ss_pred HHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCC
Q 004093 330 EESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP----NFTYHVYVAYALMAFCQDKD 405 (774)
Q Consensus 330 ~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~----~~~~~~~i~~A~lE~~~~gd 405 (774)
....|+.+.|.+.|.+++...|. .+.+|...++.++-+++.++|.+-+++|++.. +..++.|++-+.+ |+..|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l-yRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL-YRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HHHhCc
Confidence 33568888899999999988876 57788888888888888899998888888742 2236778877766 455588
Q ss_pred HHHHHHHHHHHHHH
Q 004093 406 PKLAHNVFEAGLKR 419 (774)
Q Consensus 406 ~~~A~~ife~al~~ 419 (774)
.+.||.=|+.+-..
T Consensus 131 dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 131 DDAARADFEAAAQL 144 (175)
T ss_pred hHHHHHhHHHHHHh
Confidence 88888888888764
No 225
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.38 Score=50.18 Aligned_cols=152 Identities=14% Similarity=0.050 Sum_probs=80.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHH
Q 004093 298 KSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKY 377 (774)
Q Consensus 298 ~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~i 377 (774)
+..+++.|++++..-.+..|.+..-.-.++-.+-...++..|-.+|+++....|. .+..-+.+++-+...+.+..|..+
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~-~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE-LEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH-HHHHHHHHHHHHHHhcccHHHHHH
Confidence 3445566666666666666655443333444444445666677777777666664 334444555555556666666666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 004093 378 FLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSS 453 (774)
Q Consensus 378 f~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~ 453 (774)
.......+.....+..--+.+.|.. +|.-.++.+.+..-. .++++.....+-++.+.|+++.|.+-|+.|++.
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse-~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSE-GDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhccc-ccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 5555443322122211122233442 566666655443210 134455555566666667777777777777764
No 226
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.47 E-value=0.35 Score=45.63 Aligned_cols=70 Identities=11% Similarity=0.024 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHH
Q 004093 355 ALAHIQFIRFLRRTEGVEAARKYFLDARKSP---NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPA 425 (774)
Q Consensus 355 ~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~---~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~ 425 (774)
...+..-+.-..+.|++++|++.|+.+...- +....+.+..+...+. .++++.|+..+++-++.+|+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCC
Confidence 3444455555566777777777777776532 2234555555555444 37888888888888888877653
No 227
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.44 Score=49.77 Aligned_cols=180 Identities=12% Similarity=-0.020 Sum_probs=115.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 004093 272 IFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSV 351 (774)
Q Consensus 272 ~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~ 351 (774)
+.+..--....|.+-.....++-++....++..|...|++.....|......+.+|.-+-+.+.+..|..+...+... +
T Consensus 30 I~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~-~ 108 (459)
T KOG4340|consen 30 IQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN-P 108 (459)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC-H
Confidence 334444444556666666666667777778888888888888888888887777887777777777777776655443 2
Q ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 004093 352 NTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYA 431 (774)
Q Consensus 352 ~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya 431 (774)
.-.......-+.+..+.+++-.+|.+.++.-.. ....+.++.+-+.|.. |+++.|.+-|..++....-++-+....+
T Consensus 109 ~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCllyke-gqyEaAvqkFqaAlqvsGyqpllAYniA 185 (459)
T KOG4340|consen 109 ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLYKE-GQYEAAVQKFQAALQVSGYQPLLAYNLA 185 (459)
T ss_pred HHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cccchhccchheeecc-ccHHHHHHHHHHHHhhcCCCchhHHHHH
Confidence 101111111122333456777777777664321 3456667666666664 8888888888888887766666666666
Q ss_pred HHHHhcCChhHHHH----HHHHHHhcCC
Q 004093 432 DFLSRLNDDRNIRA----LFERALSSLP 455 (774)
Q Consensus 432 ~~l~~~gd~~~Ar~----lfEraL~~~p 455 (774)
-.+...+++..|.+ +.+|.+...|
T Consensus 186 LaHy~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 186 LAHYSSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhhhhcCC
Confidence 66667777766654 4555555555
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.32 E-value=0.022 Score=47.71 Aligned_cols=63 Identities=21% Similarity=0.128 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcCC---CCC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 004093 321 MLRYAFAELEESRGAIAAAKKLYESLLTDS---VNT---TALAHIQFIRFLRRTEGVEAARKYFLDARK 383 (774)
Q Consensus 321 ~l~~~~a~l~e~~g~~e~A~~iyek~l~~~---~~~---~~~~~~~~a~~~~r~~~~~~Ar~if~~al~ 383 (774)
..+..++.++...|++++|...|+++++.. +.. ...++..++.++...|++++|.+.|+++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455667777777777777777777777541 111 133556666666667777777777766653
No 229
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.30 E-value=0.23 Score=49.09 Aligned_cols=87 Identities=17% Similarity=0.088 Sum_probs=75.3
Q ss_pred hchHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYP-----DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAK 340 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~-----~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~ 340 (774)
+.+..+...|..||..+|..+ -++.+-+-.+++.+..+.|++-+.+||..+|.........|.+|++..++++|.
T Consensus 109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eeal 188 (271)
T KOG4234|consen 109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEAL 188 (271)
T ss_pred ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHH
Confidence 445667788999999988643 355566778888999999999999999999998888888899999999999999
Q ss_pred HHHHHHhcCCCC
Q 004093 341 KLYESLLTDSVN 352 (774)
Q Consensus 341 ~iyek~l~~~~~ 352 (774)
.-|++++...|.
T Consensus 189 eDyKki~E~dPs 200 (271)
T KOG4234|consen 189 EDYKKILESDPS 200 (271)
T ss_pred HHHHHHHHhCcc
Confidence 999999999986
No 230
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.27 E-value=0.076 Score=56.17 Aligned_cols=95 Identities=14% Similarity=0.014 Sum_probs=56.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCH
Q 004093 292 YATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGV 371 (774)
Q Consensus 292 ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~ 371 (774)
-+.-+.++|.+++|+..|.+++...|.+..++...|..|.+.+.|..|..-.+.++..+.. ...+|...+..-...|.+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhH
Confidence 3555566777777777777777777777777777777777766666666666655555432 333444444333344455
Q ss_pred HHHHHHHHHHhcCCCC
Q 004093 372 EAARKYFLDARKSPNF 387 (774)
Q Consensus 372 ~~Ar~if~~al~~~~~ 387 (774)
++|.+-+++++...+.
T Consensus 182 ~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHhHHHHHhhCcc
Confidence 5555555555444333
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=1.2 Score=46.99 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=47.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 004093 294 TWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 348 (774)
Q Consensus 294 ~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~ 348 (774)
.-....+++.+|..+|..++...|++..+.+.|++.+...|+.+.|..++..+-.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 3445678999999999999999999999999999999999999999999877543
No 232
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.17 E-value=0.086 Score=55.75 Aligned_cols=106 Identities=11% Similarity=-0.035 Sum_probs=79.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCH
Q 004093 327 AELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDP 406 (774)
Q Consensus 327 a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~ 406 (774)
+.-+..+|.|++|+.+|.+.+...|. ++-.+...+-.+.+...+.-|..-+..|+...+....+|..-+..-..+ |..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L-g~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL-GNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH-hhH
Confidence 44566788889999999998888874 3455666666677777777777778888877666677777765554444 788
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004093 407 KLAHNVFEAGLKRFMHEPAYILEYADFL 434 (774)
Q Consensus 407 ~~A~~ife~al~~~p~~~~l~~~ya~~l 434 (774)
.+|.+=+|.+|...|++.++-..|+++-
T Consensus 182 ~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred HHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 8899999999998888888877776653
No 233
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.14 E-value=2.6 Score=45.95 Aligned_cols=116 Identities=17% Similarity=0.261 Sum_probs=83.3
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-cCC------
Q 004093 354 TALAHIQFIRFLRRTEGVEAARKYFLDARKSP----NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR-FMH------ 422 (774)
Q Consensus 354 ~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~----~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~-~p~------ 422 (774)
....|+.+++..+..|.++.|...+.++.+.. ...+.+.+..|.+.+.. |+...|...++..++. ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~-g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQ-GEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhhhcccccc
Confidence 34688999999999999999999999888743 12467888888888885 8888999988888872 111
Q ss_pred ---------------------------CHHHHHHHHHHHHhc------CChhHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 004093 423 ---------------------------EPAYILEYADFLSRL------NDDRNIRALFERALSSLPPEESIEVWKRFTQF 469 (774)
Q Consensus 423 ---------------------------~~~l~~~ya~~l~~~------gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~f 469 (774)
...+++.++.+.... ++.+++...|..+++..| .....|..|..|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP--SWEKAWHSWALF 301 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh--hHHHHHHHHHHH
Confidence 023455666666666 677888888888888766 445577777666
Q ss_pred HHH
Q 004093 470 EQM 472 (774)
Q Consensus 470 E~~ 472 (774)
...
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 543
No 234
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.04 E-value=0.05 Score=37.56 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004093 286 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS 319 (774)
Q Consensus 286 ~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~ 319 (774)
+.+|+..+..+...|++++|.+.|++|++.+|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3678888999999999999999999999888863
No 235
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=2.3 Score=43.98 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=81.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC----CCC-cHHHHHHHHHHH
Q 004093 292 YATWNAKSGSIDAAIKVFQRALKAL-PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS----VNT-TALAHIQFIRFL 365 (774)
Q Consensus 292 ya~~l~~~g~~e~A~~v~erAl~~~-P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~----~~~-~~~~~~~~a~~~ 365 (774)
|+.++.-.+.+.-....+.+.++.+ |..+.+--.++.+-.+.|+++.|...|++.-+.. ..+ ...+...-+-.+
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 3445555556666667777777766 4666777777777778888877777777433211 110 122333334444
Q ss_pred HHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Q 004093 366 RRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 422 (774)
Q Consensus 366 ~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~ 422 (774)
.-++++..|-..|.+++...+.+...-.+-|.+..+. |+...|.+..+.++...|.
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl-g~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL-GKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred ecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH-HHHHHHHHHHHHHhccCCc
Confidence 4566777777777777776555555555556655554 7888888888888887764
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.83 E-value=1.9 Score=47.52 Aligned_cols=139 Identities=14% Similarity=0.044 Sum_probs=87.6
Q ss_pred cCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHhc
Q 004093 282 LYHYPDIWYDYATWNAK---SGSIDAAIKVFQRALKA-LPDSEMLRYAFAELEESR---------GAIAAAKKLYESLLT 348 (774)
Q Consensus 282 ~p~~~~iW~~ya~~l~~---~g~~e~A~~v~erAl~~-~P~~~~l~~~~a~l~e~~---------g~~e~A~~iyek~l~ 348 (774)
.+....+-+.||..+.+ .|+.++|++++..++.. .+.+.+.+...+.++... ...++|...|.++..
T Consensus 175 ~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 175 VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 45678899999999999 89999999999997654 456677776666655432 246899999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHhcC----HHHHHHHH---HHHh-cCCC-CCHHHHHHHHH-HHHh-cCCCHHHHHHHHHHHH
Q 004093 349 DSVNTTALAHIQFIRFLRRTEG----VEAARKYF---LDAR-KSPN-FTYHVYVAYAL-MAFC-QDKDPKLAHNVFEAGL 417 (774)
Q Consensus 349 ~~~~~~~~~~~~~a~~~~r~~~----~~~Ar~if---~~al-~~~~-~~~~~~i~~A~-lE~~-~~gd~~~A~~ife~al 417 (774)
..++..+. ++++-++...|. -.+.+++- ...+ +.+. ..-.-|...|. +|.. +.||.++|.+.+++++
T Consensus 255 ~~~~~Y~G--IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 255 IEPDYYSG--INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred CCccccch--HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88753322 344444444433 23444443 1111 1111 11122222222 2221 2589999999999999
Q ss_pred HHcCC
Q 004093 418 KRFMH 422 (774)
Q Consensus 418 ~~~p~ 422 (774)
+..|.
T Consensus 333 ~l~~~ 337 (374)
T PF13281_consen 333 KLKPP 337 (374)
T ss_pred hcCCc
Confidence 87654
No 237
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=1.9 Score=43.80 Aligned_cols=135 Identities=15% Similarity=0.086 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHh-CCHHHHHHHHHHHhcCCCCCc-----
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE------MLRYAFAELEESR-GAIAAAKKLYESLLTDSVNTT----- 354 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~------~l~~~~a~l~e~~-g~~e~A~~iyek~l~~~~~~~----- 354 (774)
..+...+..+ +..++++|.+.+++||...-+-. ..++..+++++.. .++++|...|+.+-+......
T Consensus 75 t~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA 153 (288)
T KOG1586|consen 75 TTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA 153 (288)
T ss_pred HHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence 3444444444 44588999999999998754332 3455788888875 889999999999887654321
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Q 004093 355 ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF------TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 422 (774)
Q Consensus 355 ~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~------~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~ 422 (774)
...++.-+.+....+.+.+|+++|++.....-. ...-|+--|.|-+-+..|.-.+...+++....+|.
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 135666777778889999999999987653211 12223323333333346777788888888887775
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.56 E-value=0.52 Score=54.09 Aligned_cols=119 Identities=19% Similarity=0.253 Sum_probs=81.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC---cHHHHHHHHHHHHHhcCHHHHH
Q 004093 299 SGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT---TALAHIQFIRFLRRTEGVEAAR 375 (774)
Q Consensus 299 ~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~---~~~~~~~~a~~~~r~~~~~~Ar 375 (774)
..+.+.|.++++...+..|++..+.+.-+.++...|++++|.+.|++++...... ....+..++-.+..+.++++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3467889999999999999999988899999999999999999999988533210 1234445555566678899999
Q ss_pred HHHHHHhcCCCCCHHHHHHH-HHHHHhcCCCH-------HHHHHHHHHHHH
Q 004093 376 KYFLDARKSPNFTYHVYVAY-ALMAFCQDKDP-------KLAHNVFEAGLK 418 (774)
Q Consensus 376 ~if~~al~~~~~~~~~~i~~-A~lE~~~~gd~-------~~A~~ife~al~ 418 (774)
..|.+..+...-+.-+|... |.....+ ++. ++|.++|.+.-.
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l-~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLML-GREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhh-ccchhhhhhHHHHHHHHHHHHH
Confidence 99998887544322222221 2222232 555 566666665544
No 239
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=94.45 E-value=12 Score=44.10 Aligned_cols=48 Identities=21% Similarity=0.280 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004093 404 KDPKLAHNVFEAGLKRFMH--EPAYILEYADFLSRLNDDRNIRALFERAL 451 (774)
Q Consensus 404 gd~~~A~~ife~al~~~p~--~~~l~~~ya~~l~~~gd~~~Ar~lfEraL 451 (774)
++++.+-.+|+.......+ ...+++...+.+.-.+++-.+|.-|-+.|
T Consensus 379 ~emDd~~~~f~lL~n~vkdT~aE~yfLSILQhlllirnDy~~rpqYykLI 428 (1102)
T KOG1924|consen 379 AEMDDANEVFELLANTVKDTGAEPYFLSILQHLLLIRNDYYIRPQYYKLI 428 (1102)
T ss_pred hhhccHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 5677788888877765332 23455566665554444434443333333
No 240
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.29 E-value=1.5 Score=48.50 Aligned_cols=41 Identities=20% Similarity=0.058 Sum_probs=36.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004093 275 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA 315 (774)
Q Consensus 275 yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~ 315 (774)
+-..|..+|.+.+..++.+.++..+|+.+.|.++++||+-.
T Consensus 29 l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~ 69 (360)
T PF04910_consen 29 LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA 69 (360)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44667889999999999999999999999999999999744
No 241
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.14 E-value=7.7 Score=39.64 Aligned_cols=171 Identities=15% Similarity=0.091 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 004093 269 KRIIFTYEQCLMYL------YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKL 342 (774)
Q Consensus 269 ~r~~~~yeraL~~~------p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~i 342 (774)
+.+..+|.++-... ..-.+.+...+.++.+.|+-..|...|-.|-+. + +..+.++|..+
T Consensus 31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c--------------y-kk~~~~eAv~c 95 (288)
T KOG1586|consen 31 EEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC--------------Y-KKVDPEEAVNC 95 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH--------------h-hccChHHHHHH
Confidence 33445555554322 123455666666666666555554444444322 1 22355666666
Q ss_pred HHHHhcCCCCC-----cHHHHHHHHHHHHH-hcCHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCCHHHHH
Q 004093 343 YESLLTDSVNT-----TALAHIQFIRFLRR-TEGVEAARKYFLDARKS------PNFTYHVYVAYALMAFCQDKDPKLAH 410 (774)
Q Consensus 343 yek~l~~~~~~-----~~~~~~~~a~~~~r-~~~~~~Ar~if~~al~~------~~~~~~~~i~~A~lE~~~~gd~~~A~ 410 (774)
+++++++..+. -+.-++..+.++.. ..+++.|+..|++|-+. ....-..++..|.+-..+ +.+.+|+
T Consensus 96 L~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l-eqY~~Ai 174 (288)
T KOG1586|consen 96 LEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL-EQYSKAI 174 (288)
T ss_pred HHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH-HHHHHHH
Confidence 66666554321 12234455555543 47889999999988752 122345566666655454 7899999
Q ss_pred HHHHHHHHHcCCCHHH-------HHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 411 NVFEAGLKRFMHEPAY-------ILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 411 ~ife~al~~~p~~~~l-------~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
+|||.......++.-+ ++.-+-+++-..|.-+++..+|+..+..|
T Consensus 175 ~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 175 DIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 9999998876665433 23333334444677788888888888776
No 242
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.00 E-value=0.43 Score=45.16 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=49.3
Q ss_pred HHHHHHHH-HhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004093 24 ETAEILAN-SALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLL 88 (774)
Q Consensus 24 ~~W~~l~~-~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~ 88 (774)
.+...++. ....++.++|..++++++..+|.+ ..+|..++..+...|+...|.++|+++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~----E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYD----EEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34444555 334568999999999999999999 99999999999999999999999999864
No 243
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.95 E-value=7.5 Score=39.26 Aligned_cols=186 Identities=16% Similarity=0.105 Sum_probs=114.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHH
Q 004093 293 ATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVE 372 (774)
Q Consensus 293 a~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~ 372 (774)
+.++.+.|-..-|+.=|.+++...|+-+.....++.++...|+++.|.+.|+..++.+|. ...++...+-...--|++.
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchH
Confidence 445666677788999999999999999999888899999999999999999999999986 3334433332222347777
Q ss_pred HHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHcCCCHHHH-HHHHHHHHhcCChhHHHHHHH
Q 004093 373 AARKYFLDARKSPNFT--YHVYVAYALMAFCQDKDPKLAHN-VFEAGLKRFMHEPAYI-LEYADFLSRLNDDRNIRALFE 448 (774)
Q Consensus 373 ~Ar~if~~al~~~~~~--~~~~i~~A~lE~~~~gd~~~A~~-ife~al~~~p~~~~l~-~~ya~~l~~~gd~~~Ar~lfE 448 (774)
-|.+-|.+--+..+.. -..|+-. .|.. -++..|+. +.+++.+ .+.+.| ...+.|+. |... ...+|+
T Consensus 151 LAq~d~~~fYQ~D~~DPfR~LWLYl--~E~k--~dP~~A~tnL~qR~~~---~d~e~WG~~iV~~yL--gkiS-~e~l~~ 220 (297)
T COG4785 151 LAQDDLLAFYQDDPNDPFRSLWLYL--NEQK--LDPKQAKTNLKQRAEK---SDKEQWGWNIVEFYL--GKIS-EETLME 220 (297)
T ss_pred hhHHHHHHHHhcCCCChHHHHHHHH--HHhh--CCHHHHHHHHHHHHHh---ccHhhhhHHHHHHHH--hhcc-HHHHHH
Confidence 7777666655543332 3445533 2333 36777765 4455544 334566 33344444 3322 234566
Q ss_pred HHHhcCCc-hh-HHHHHHH---HHHHHHHhCCHHHHHHHHHHHHHH
Q 004093 449 RALSSLPP-EE-SIEVWKR---FTQFEQMYGDLDSTLKVEQRRKEA 489 (774)
Q Consensus 449 raL~~~p~-e~-~~~lw~~---~~~fE~~~Gd~~~i~kv~~R~~~~ 489 (774)
++...-.. +. ...+-+. ....-...|+++.+..+++-++.-
T Consensus 221 ~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 221 RLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 66653221 11 1112222 223334579998888888776643
No 244
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.80 E-value=12 Score=40.86 Aligned_cols=216 Identities=15% Similarity=0.007 Sum_probs=151.6
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH---HHHHHHHHH-HHhCCHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKAL---PDSEM---LRYAFAELE-ESRGAIAA 338 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~---P~~~~---l~~~~a~l~-e~~g~~e~ 338 (774)
+..+-++.+-+++-..-|+-+-.|.....-....|+.+.|+++........ ++..+ .-+.-+... ....+...
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 345566778888999999999999999888899999999999998876542 22111 111111111 12345667
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHH-HHHHHH
Q 004093 339 AKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHN-VFEAGL 417 (774)
Q Consensus 339 A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~-ife~al 417 (774)
|+..-..+++..|+ ..-.-..-++.+.+.|++.++-++++.+-+..+. +.++..|-.. + .||.-..|- -.++.-
T Consensus 248 Ar~~A~~a~KL~pd-lvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~a--r-~gdta~dRlkRa~~L~ 322 (531)
T COG3898 248 ARDDALEANKLAPD-LVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRA--R-SGDTALDRLKRAKKLE 322 (531)
T ss_pred HHHHHHHHhhcCCc-cchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHh--c-CCCcHHHHHHHHHHHH
Confidence 88888888888886 4445556677888899999999999999997665 5665544332 2 366533321 122233
Q ss_pred HHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Q 004093 418 KRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQM-YGDLDSTLKVEQRRKEA 489 (774)
Q Consensus 418 ~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~-~Gd~~~i~kv~~R~~~~ 489 (774)
...|++.+-.+..+.--+.-|++..||.--|.+...-| ...++..+.+.|.- .||...+..-..+..+.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p---res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP---RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc---hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 34788887777777777788999999999999988777 34566666777765 59999998888887764
No 245
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.78 E-value=0.37 Score=45.61 Aligned_cols=62 Identities=24% Similarity=0.253 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 348 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~ 348 (774)
++...++..+...|++++|..++++++...|.+..+|..+...+...|+...|..+|+++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 55667788888999999999999999999999999999999999999999999999988754
No 246
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.76 E-value=2.9 Score=45.74 Aligned_cols=166 Identities=13% Similarity=0.002 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCHHHHHHHH-------------HHHHHhCCHHHH
Q 004093 286 PDIWYDYATWNAKSGS-------------IDAAIKVFQRALKALPDSEMLRYAFA-------------ELEESRGAIAAA 339 (774)
Q Consensus 286 ~~iW~~ya~~l~~~g~-------------~e~A~~v~erAl~~~P~~~~l~~~~a-------------~l~e~~g~~e~A 339 (774)
...+|+++..|...|+ .+++...+++|++-.-.+..+-..++ ..+..+|+++.|
T Consensus 135 ~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~a 214 (639)
T KOG1130|consen 135 SRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQA 214 (639)
T ss_pred hHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHH
Confidence 3566777777765542 35677777777766555544433222 223345788888
Q ss_pred HHHHHHHhcCCC---CC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHh----cCCCCCHHHH--HHHHHHHHhcCCCHHH
Q 004093 340 KKLYESLLTDSV---NT--TALAHIQFIRFLRRTEGVEAARKYFLDAR----KSPNFTYHVY--VAYALMAFCQDKDPKL 408 (774)
Q Consensus 340 ~~iyek~l~~~~---~~--~~~~~~~~a~~~~r~~~~~~Ar~if~~al----~~~~~~~~~~--i~~A~lE~~~~gd~~~ 408 (774)
...-+.-+.+.. +. .-.++..+++.+.-.|+++.|.+.|++.+ +.+.-..++. ..++...+- .+++++
T Consensus 215 i~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl-l~e~~k 293 (639)
T KOG1130|consen 215 IHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL-LKEVQK 293 (639)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH-HHHHHH
Confidence 766554443211 10 11356666677777788888888888754 3333333332 223333222 378888
Q ss_pred HHHHHHHHHHHcC------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004093 409 AHNVFEAGLKRFM------HEPAYILEYADFLSRLNDDRNIRALFERALS 452 (774)
Q Consensus 409 A~~ife~al~~~p------~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~ 452 (774)
|+.++.+-+++-. ....-.+..+..+..+|+-++|..+.+..++
T Consensus 294 AI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 294 AITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9988887776422 1233445677778888999999988888886
No 247
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.37 E-value=0.77 Score=44.92 Aligned_cols=65 Identities=15% Similarity=-0.060 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----------CCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Q 004093 302 IDAAIKVFQRALKALPDSEMLRYAFAELEESR----------GAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR 367 (774)
Q Consensus 302 ~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~----------g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r 367 (774)
++.|++.++.....+|.+.+.++.|+..+..+ ..+++|.+-|+.+|.++|+ .+.++..++..+..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~-~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN-KHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH
Confidence 46799999999999999998888887655433 2356677778888888887 45565555554443
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.34 E-value=0.95 Score=51.97 Aligned_cols=115 Identities=15% Similarity=0.129 Sum_probs=85.2
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS----EMLRYAFAELEESRGAIAAAKK 341 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~----~~l~~~~a~l~e~~g~~e~A~~ 341 (774)
...+.+..+.+.++...|+..=..+.-+.++...|+.++|++.|++++.....- ...++.++-.+....++++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 345667788999999999886666677999999999999999999998532211 2234466667777899999999
Q ss_pred HHHHHhcCCCCCcHHHHHHHHH--HHHHhcCH-------HHHHHHHHHHh
Q 004093 342 LYESLLTDSVNTTALAHIQFIR--FLRRTEGV-------EAARKYFLDAR 382 (774)
Q Consensus 342 iyek~l~~~~~~~~~~~~~~a~--~~~r~~~~-------~~Ar~if~~al 382 (774)
.|.++++.+.. +.+++.|+. ++...++. ++|..+|.++-
T Consensus 327 ~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 327 YFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 99999997765 455555554 55556666 67777777654
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=4.6 Score=42.62 Aligned_cols=142 Identities=15% Similarity=0.041 Sum_probs=100.6
Q ss_pred HHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhc--CCC
Q 004093 329 LEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS-PNFTYHVYVAYALMAFCQ--DKD 405 (774)
Q Consensus 329 l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~-~~~~~~~~i~~A~lE~~~--~gd 405 (774)
-....|++..|..+|..++...+. ...+-..|++.+...|+.+.|..++...-.. ....++.......+.... .++
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 334568999999999999998886 4678899999999999999999999875432 222344422211221111 122
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCC
Q 004093 406 PKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGD 475 (774)
Q Consensus 406 ~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd 475 (774)
. .-+++-+...|++.+.-+..++.+...|+.+.|...+=..+.+.-.......-..++++-..+|.
T Consensus 222 ~----~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 I----QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred H----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 2 34677788899999999999999999999999988777777654333344556666666666773
No 250
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=3.1 Score=44.45 Aligned_cols=156 Identities=12% Similarity=0.048 Sum_probs=105.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC-CCCCcH--HHHHHHHHHHHHhcCH
Q 004093 295 WNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTD-SVNTTA--LAHIQFIRFLRRTEGV 371 (774)
Q Consensus 295 ~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~-~~~~~~--~~~~~~a~~~~r~~~~ 371 (774)
.++-.|+.-+|...+++.+...|.+...|-.--+.+.-.|+.+..+..+++.+.. +++.+. .+.-.|+--+...|-+
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4456778888889999999999998777755555666678877888888888876 554333 3445677777788999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHhcCChhHHHHH
Q 004093 372 EAARKYFLDARKSPNFTYHVYVAYAL-MAFCQDKDPKLAHNVFEAGLKRFMHE----PAYILEYADFLSRLNDDRNIRAL 446 (774)
Q Consensus 372 ~~Ar~if~~al~~~~~~~~~~i~~A~-lE~~~~gd~~~A~~ife~al~~~p~~----~~l~~~ya~~l~~~gd~~~Ar~l 446 (774)
+.|.+.-+++++..+...=.-...|. +|. .+..+++.+..+.--..-... ..-|...+-|++.-++++.|..+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem--~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEM--NGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHh--cchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999999876543222222333 333 367777777654322211111 11234677788888999999999
Q ss_pred HHHHHh
Q 004093 447 FERALS 452 (774)
Q Consensus 447 fEraL~ 452 (774)
|++-+-
T Consensus 270 yD~ei~ 275 (491)
T KOG2610|consen 270 YDREIW 275 (491)
T ss_pred HHHHHH
Confidence 998764
No 251
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.25 E-value=0.17 Score=34.82 Aligned_cols=32 Identities=25% Similarity=0.566 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPD 318 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~ 318 (774)
++|+.++.++...|++++|.+.|+++++..|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57888888888888888888888888887763
No 252
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.21 E-value=8.4 Score=39.98 Aligned_cols=129 Identities=18% Similarity=0.076 Sum_probs=83.3
Q ss_pred hchHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHh-------C
Q 004093 266 SSNKRIIFTYEQCLMYLYH---YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEML-RYAFAELEESR-------G 334 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~---~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l-~~~~a~l~e~~-------g 334 (774)
+..+.+...|+......|. ..++-++.+..+.+.++++.|+...+|-++..|.+..+ |..|...+... .
T Consensus 48 gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~r 127 (254)
T COG4105 48 GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTR 127 (254)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcccc
Confidence 4456778889988887764 56788888888999999999999999999999987654 22233222211 1
Q ss_pred C---HHHHHHHHHHHhcCCCCCc----HHHH------------HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHH
Q 004093 335 A---IAAAKKLYESLLTDSVNTT----ALAH------------IQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA 394 (774)
Q Consensus 335 ~---~e~A~~iyek~l~~~~~~~----~~~~------------~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~ 394 (774)
+ ...|..-|+.++...|+.. +..- .+-++|+.+.+.+..|..=|+++++..+.+.++.-.
T Consensus 128 Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ea 206 (254)
T COG4105 128 DQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREA 206 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHH
Confidence 1 2456777888999888731 1111 223445555566666666666666654444444333
No 253
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.03 E-value=0.41 Score=50.12 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 403 DKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 403 ~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
.|+.++|.++|+.+++..|++++.+..|+.|....++.-+|-.+|-+||..-|
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 58999999999999999999999999999999988999999999999998766
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.84 E-value=4.6 Score=43.61 Aligned_cols=131 Identities=13% Similarity=0.052 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC----C----
Q 004093 288 IWYDYATWNAKSGSIDAAIKVFQRALKALP--DS----EMLRYAFAELEESRGAIAAAKKLYESLLTDSVN----T---- 353 (774)
Q Consensus 288 iW~~ya~~l~~~g~~e~A~~v~erAl~~~P--~~----~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~----~---- 353 (774)
.....+..+...+.++++.+.|+.|++..- .+ ..+...++.++-+..++++|.-...++.+...+ +
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 334455555556667777777777776421 22 234566777777777777776666666543221 0
Q ss_pred -cHHHHHHHHHHHHHhcCHHHHHHHHHHHhc----CCCC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 004093 354 -TALAHIQFIRFLRRTEGVEAARKYFLDARK----SPNF--TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR 419 (774)
Q Consensus 354 -~~~~~~~~a~~~~r~~~~~~Ar~if~~al~----~~~~--~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~ 419 (774)
...+.+.++-.++..|.+-.|.+..++|.+ .++- .......+|.+... .||.+.|..-||.++..
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~-~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS-RGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh-cccHhHHHHHHHHHHHH
Confidence 011223334444556666666666666554 2221 12223334554333 37777777777777653
No 255
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.67 E-value=0.23 Score=33.66 Aligned_cols=32 Identities=44% Similarity=0.578 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004093 288 IWYDYATWNAKSGSIDAAIKVFQRALKALPDS 319 (774)
Q Consensus 288 iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~ 319 (774)
+++..|..+.+.|+.++|+++|++.++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45667777777778888888888888777764
No 256
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.48 E-value=3.9 Score=44.52 Aligned_cols=67 Identities=19% Similarity=0.328 Sum_probs=56.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 004093 282 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPD----SEMLRYAFAELEESRGAIAAAKKLYESLLT 348 (774)
Q Consensus 282 ~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~----~~~l~~~~a~l~e~~g~~e~A~~iyek~l~ 348 (774)
.......|..++...-+.|.++.|...+.++....+. ...+.+.++.+.-..|+-.+|...++..++
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456789999999999999999999999999886531 356777889999999999999998888887
No 257
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.09 E-value=0.33 Score=33.16 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004093 61 KFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ 92 (774)
Q Consensus 61 ~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~ 92 (774)
++|..++..+...|++++|++.|++++...|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 57888888888899999999999998887664
No 258
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.78 E-value=18 Score=37.38 Aligned_cols=124 Identities=15% Similarity=0.132 Sum_probs=71.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhCCHHHHHHHHHHHhcC------CCCCcHHHHHHHHH
Q 004093 296 NAKSGSIDAAIKVFQRALKALPDSE------MLRYAFAELEESRGAIAAAKKLYESLLTD------SVNTTALAHIQFIR 363 (774)
Q Consensus 296 l~~~g~~e~A~~v~erAl~~~P~~~------~l~~~~a~l~e~~g~~e~A~~iyek~l~~------~~~~~~~~~~~~a~ 363 (774)
..++.++++|+++|+|++...-.+. .++-..+.++.+...+++|-..+.+-... .+. ....++..+.
T Consensus 120 ~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~-~~k~~va~il 198 (308)
T KOG1585|consen 120 ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNS-QCKAYVAAIL 198 (308)
T ss_pred HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhccc-HHHHHHHHHH
Confidence 3455678888888888887655442 23334455666666777666555543321 111 2345555555
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Q 004093 364 FLRRTEGVEAARKYFLDARKSPNF----TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 422 (774)
Q Consensus 364 ~~~r~~~~~~Ar~if~~al~~~~~----~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~ 422 (774)
.+.-..++..|.++|+..-+.|.- ...+..++ ++....||.+.+.++.....-++.+
T Consensus 199 v~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL--L~ayd~gD~E~~~kvl~sp~~r~MD 259 (308)
T KOG1585|consen 199 VYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL--LTAYDEGDIEEIKKVLSSPTVRNMD 259 (308)
T ss_pred HHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH--HHHhccCCHHHHHHHHcChHhhhhh
Confidence 555667888888888877665432 12222222 2223347888877777655554444
No 259
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.19 E-value=0.88 Score=46.30 Aligned_cols=80 Identities=14% Similarity=0.095 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 004093 269 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 348 (774)
Q Consensus 269 ~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~ 348 (774)
..++..|-++|..+|..+..|.+-|..+.+..+++.+..-..+|+...|+....++.++....+...++.|..+++++..
T Consensus 27 ~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 27 DDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred chHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 34567899999999999999999999999988999999999999999999988888888888888888889888888854
No 260
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=91.17 E-value=0.64 Score=48.75 Aligned_cols=62 Identities=24% Similarity=0.358 Sum_probs=49.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHH
Q 004093 296 NAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAH 358 (774)
Q Consensus 296 l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~ 358 (774)
..+.|+.++|..+|+.|++..|.+.++...|+.|.+...++-+|..+|-+++.+.|. ++.+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~-nseAL 187 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG-NSEAL 187 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC-chHHH
Confidence 445678888888888888888888888888888888888888888888888888776 34443
No 261
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.11 E-value=1.7 Score=48.52 Aligned_cols=143 Identities=18% Similarity=0.214 Sum_probs=94.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh-cCCCC---C----cHHHHHHHHHH
Q 004093 293 ATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL-TDSVN---T----TALAHIQFIRF 364 (774)
Q Consensus 293 a~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l-~~~~~---~----~~~~~~~~a~~ 364 (774)
..++.+..+...+..-.+-++...-++....+.-+.+|...|++.+|.+++...= ...+. + ...+|..++-+
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI 292 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI 292 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceE
Confidence 3444444443333333333444444566666666778888899888877764421 11111 1 22466777777
Q ss_pred HHHhcCHHHHHHHHHHHhcC----------C--------CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHH
Q 004093 365 LRRTEGVEAARKYFLDARKS----------P--------NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAY 426 (774)
Q Consensus 365 ~~r~~~~~~Ar~if~~al~~----------~--------~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l 426 (774)
..+.+.+..+..+|++|++. + ....++..+.+....+. |.+..|.+.|..+...|..+|.+
T Consensus 293 h~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~-grPl~AfqCf~~av~vfh~nPrl 371 (696)
T KOG2471|consen 293 HYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHS-GRPLLAFQCFQKAVHVFHRNPRL 371 (696)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhc-CCcHHHHHHHHHHHHHHhcCcHH
Confidence 77888888888888888851 1 12366666666655554 99999999999999999999999
Q ss_pred HHHHHHHHHh
Q 004093 427 ILEYADFLSR 436 (774)
Q Consensus 427 ~~~ya~~l~~ 436 (774)
|+..++..+.
T Consensus 372 WLRlAEcCim 381 (696)
T KOG2471|consen 372 WLRLAECCIM 381 (696)
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 262
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.91 E-value=11 Score=40.35 Aligned_cols=144 Identities=11% Similarity=0.010 Sum_probs=96.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 004093 273 FTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA-LPDS---EMLRYAFAELEESRGAIAAAKKLYESLLT 348 (774)
Q Consensus 273 ~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~-~P~~---~~l~~~~a~l~e~~g~~e~A~~iyek~l~ 348 (774)
...++.|...|.+--.|-.--..+.-+|+.+.-+..+++.+-. +++- ..++-.|+--++..|-+++|.+.-+++++
T Consensus 124 ~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralq 203 (491)
T KOG2610|consen 124 IEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQ 203 (491)
T ss_pred HHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhcc
Confidence 4577788888877666665555666678888888888888765 4443 44555667677788999999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004093 349 DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF----TYHVYVAYALMAFCQDKDPKLAHNVFEAGLK 418 (774)
Q Consensus 349 ~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~----~~~~~i~~A~lE~~~~gd~~~A~~ife~al~ 418 (774)
+++.+ +-+....+..+.-.++++++.+...+--.+=++ ..|-|...|.+.... +.++.|..||++-+-
T Consensus 204 iN~~D-~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~-aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 204 INRFD-CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEG-AEYEKALEIYDREIW 275 (491)
T ss_pred CCCcc-hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcc-cchhHHHHHHHHHHH
Confidence 98863 223334444555567788887776654332222 245566666654443 789999999987664
No 263
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.37 E-value=0.62 Score=31.94 Aligned_cols=32 Identities=13% Similarity=0.264 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004093 61 KFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ 92 (774)
Q Consensus 61 ~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~ 92 (774)
+.|...+..+...+++++|...|+++|+..|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57888888888889999999999998887664
No 264
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.15 E-value=18 Score=38.49 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=32.9
Q ss_pred HHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHhC-CHHHHHHHHHHHhcC
Q 004093 297 AKSGSIDAAIKVFQRALKAL----PDS----EMLRYAFAELEESRG-AIAAAKKLYESLLTD 349 (774)
Q Consensus 297 ~~~g~~e~A~~v~erAl~~~----P~~----~~l~~~~a~l~e~~g-~~e~A~~iyek~l~~ 349 (774)
+++|+.+.|...|.|+-... |+. ..+.+..+.-....+ +++.|...++++.+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 56788888888888886543 222 123344555455556 777777777766654
No 265
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.93 E-value=2.6 Score=41.76 Aligned_cols=93 Identities=18% Similarity=0.168 Sum_probs=63.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Q 004093 291 DYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR 367 (774)
Q Consensus 291 ~ya~~l~~~g~~e~A~~v~erAl~~~P~~---~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r 367 (774)
..+.-+...+++++|...++.++..-.++ ..+-+.++.+..+.|.+++|..+++..-...- .+.+-...++++..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 44555666788888888888888653332 23456778888888888888887766443221 23344556677777
Q ss_pred hcCHHHHHHHHHHHhcCC
Q 004093 368 TEGVEAARKYFLDARKSP 385 (774)
Q Consensus 368 ~~~~~~Ar~if~~al~~~ 385 (774)
.|+-++||.-|++++...
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 788888888888887763
No 266
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.91 E-value=27 Score=36.39 Aligned_cols=184 Identities=9% Similarity=0.004 Sum_probs=117.6
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH-HHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG-SIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIA-AAKKLYE 344 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g-~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e-~A~~iye 344 (774)
...|+..+-+.||..+|-+..+|.---.++...+ +..+-.+.+.+.+..+|++-.+|...-.+.+..|+.. +-..+-+
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~ 137 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTK 137 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHH
Confidence 4568899999999999999999986655555543 5778889999999999999999988777888888776 5566777
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHH
Q 004093 345 SLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDP-----KLAHNVFEAGLKR 419 (774)
Q Consensus 345 k~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~-----~~A~~ife~al~~ 419 (774)
.++..... +-.+|...--..+..++++.-.+.-.+.++..--+-.+|..--.+.....|-. +.-...-...+..
T Consensus 138 ~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~ 216 (318)
T KOG0530|consen 138 LMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILL 216 (318)
T ss_pred HHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHh
Confidence 77775543 33467555445555667777777666666532222223322100000001211 2223444566677
Q ss_pred cCCCHHHHHHHHHHHHh-cC--ChhHHHHHHHHHH
Q 004093 420 FMHEPAYILEYADFLSR-LN--DDRNIRALFERAL 451 (774)
Q Consensus 420 ~p~~~~l~~~ya~~l~~-~g--d~~~Ar~lfEraL 451 (774)
.|++..-|....-++.. .| .+.+.-.+.+..+
T Consensus 217 vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 217 VPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred CCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 89998888766666654 33 2444555555544
No 267
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.73 E-value=0.94 Score=46.13 Aligned_cols=82 Identities=20% Similarity=0.117 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004093 301 SIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLD 380 (774)
Q Consensus 301 ~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~ 380 (774)
.+..|+..|.+||..+|.....|..-|..+.+..+++.+..--.++++..++ ....+..+........+++.|++++.+
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 4678999999999999999999999999999999999999888999998886 456777778888888899999999999
Q ss_pred Hhc
Q 004093 381 ARK 383 (774)
Q Consensus 381 al~ 383 (774)
|..
T Consensus 104 a~s 106 (284)
T KOG4642|consen 104 AYS 106 (284)
T ss_pred HHH
Confidence 854
No 268
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.68 E-value=0.54 Score=47.47 Aligned_cols=59 Identities=27% Similarity=0.370 Sum_probs=43.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 004093 294 TWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 294 ~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~ 352 (774)
..+.+.++.+.|.++|.+|+...|.-..-|+.++.+.+..|+++.|-..|++.++.+|.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 34456667777777777777777777777777777777777777777777777777765
No 269
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.53 E-value=11 Score=43.32 Aligned_cols=141 Identities=16% Similarity=0.154 Sum_probs=92.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C----------------CCCHHHH---HHHHHHHHHhCCHH
Q 004093 282 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA-----L----------------PDSEMLR---YAFAELEESRGAIA 337 (774)
Q Consensus 282 ~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~-----~----------------P~~~~l~---~~~a~l~e~~g~~e 337 (774)
.|.+.+-.++.+.+...+|+.+.|..+.+|||=. . |.+..++ +.|...+.++|-+.
T Consensus 280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~r 359 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWR 359 (665)
T ss_pred CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChH
Confidence 3778899999999999999988888888777621 1 2232332 35566667788898
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHH-HHHHhcCHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCC--CHHHHH
Q 004093 338 AAKKLYESLLTDSVNTTALAHIQFIR-FLRRTEGVEAARKYFLDARKSPNF----TYHVYVAYALMAFCQDK--DPKLAH 410 (774)
Q Consensus 338 ~A~~iyek~l~~~~~~~~~~~~~~a~-~~~r~~~~~~Ar~if~~al~~~~~----~~~~~i~~A~lE~~~~g--d~~~A~ 410 (774)
.|.+.-+-++...|...+..-+.+++ |+.|..++.=.+.+|+........ ++..=+..|.+..+.+. +...|+
T Consensus 360 TA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~ 439 (665)
T KOG2422|consen 360 TALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSAL 439 (665)
T ss_pred HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHH
Confidence 89888888888888744444444444 556777777777777766432111 23333344444333322 256788
Q ss_pred HHHHHHHHHcCC
Q 004093 411 NVFEAGLKRFMH 422 (774)
Q Consensus 411 ~ife~al~~~p~ 422 (774)
..+.+|++.+|.
T Consensus 440 ~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 440 NALLQALKHHPL 451 (665)
T ss_pred HHHHHHHHhCcH
Confidence 888888888874
No 270
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.21 E-value=3.9 Score=35.54 Aligned_cols=63 Identities=17% Similarity=0.128 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCC
Q 004093 273 FTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS--EMLRYAFAELEESRGA 335 (774)
Q Consensus 273 ~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~--~~l~~~~a~l~e~~g~ 335 (774)
..+++.+..+|.+.+..+.++..+...|++++|.+.+-..++..+.. ....-.+..+....|.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 56778888888888888888888888888888888888888776643 3444445555555544
No 271
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=88.15 E-value=0.82 Score=29.42 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPD 318 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~ 318 (774)
.+|+.++..+...++++.|...|+++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45677777777777777777777777776654
No 272
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=87.97 E-value=67 Score=38.35 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=11.1
Q ss_pred HHHHHhcCHHHHHHHHHHHh
Q 004093 363 RFLRRTEGVEAARKYFLDAR 382 (774)
Q Consensus 363 ~~~~r~~~~~~Ar~if~~al 382 (774)
++.--.+++|.+-.+|+-..
T Consensus 373 rledir~emDd~~~~f~lL~ 392 (1102)
T KOG1924|consen 373 RLEDIRAEMDDANEVFELLA 392 (1102)
T ss_pred HHHhhhhhhccHHHHHHHHH
Confidence 34434455666666666544
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.35 E-value=1.2 Score=31.23 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 004093 289 WYDYATWNAKSGSIDAAIKVFQRAL 313 (774)
Q Consensus 289 W~~ya~~l~~~g~~e~A~~v~erAl 313 (774)
|..++.++.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566677777777777777777744
No 274
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=86.85 E-value=0.92 Score=50.61 Aligned_cols=92 Identities=17% Similarity=0.030 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 004093 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFE 414 (774)
Q Consensus 335 ~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife 414 (774)
.++.|...|.++|+.+|+ .+..|-..+....+.+++-.|..=+.+|++..++....|+.-+..-... +...+|+..|+
T Consensus 19 ~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l-~~~~~A~~~l~ 96 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL-GEFKKALLDLE 96 (476)
T ss_pred hHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH-HHHHHHHHHHH
Confidence 444555555555555443 2233333333444445555555555555555444444444433322222 45555666666
Q ss_pred HHHHHcCCCHHHHH
Q 004093 415 AGLKRFMHEPAYIL 428 (774)
Q Consensus 415 ~al~~~p~~~~l~~ 428 (774)
...+..|+++.+..
T Consensus 97 ~~~~l~Pnd~~~~r 110 (476)
T KOG0376|consen 97 KVKKLAPNDPDATR 110 (476)
T ss_pred HhhhcCcCcHHHHH
Confidence 66666666555443
No 275
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.45 E-value=18 Score=40.05 Aligned_cols=148 Identities=18% Similarity=0.195 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC--------------CC-----------Cc-
Q 004093 301 SIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS--------------VN-----------TT- 354 (774)
Q Consensus 301 ~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~--------------~~-----------~~- 354 (774)
|.+.-..+ ++.+|......+..+++...+|+.+.|.++.++++-.. .. .+
T Consensus 25 Dp~~l~~l----l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR 100 (360)
T PF04910_consen 25 DPNALINL----LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENR 100 (360)
T ss_pred CHHHHHHH----HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccch
Confidence 44444444 45689999999999999999999988888877776321 00 01
Q ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-C----C
Q 004093 355 --ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF----TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM-H----E 423 (774)
Q Consensus 355 --~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~----~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p-~----~ 423 (774)
-.+...|+....+.|.+..|.++.+-.+...+. ..-.++.+-.+ + .++++--.++++....... + -
T Consensus 101 ~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~AL--r-s~~y~~Li~~~~~~~~~~~~~~~~~l 177 (360)
T PF04910_consen 101 QFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYAL--R-SRQYQWLIDFSESPLAKCYRNWLSLL 177 (360)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHH--h-cCCHHHHHHHHHhHhhhhhhhhhhhC
Confidence 134467778888889999999988888874332 23444443222 2 3666656666665444211 1 1
Q ss_pred HHHHHHHHHHHHhcCCh---------------hHHHHHHHHHHhcCC
Q 004093 424 PAYILEYADFLSRLNDD---------------RNIRALFERALSSLP 455 (774)
Q Consensus 424 ~~l~~~ya~~l~~~gd~---------------~~Ar~lfEraL~~~p 455 (774)
|.+....+-.+...++. +.|+..+.+|+..+|
T Consensus 178 Pn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 178 PNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred ccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 22333333333334444 788888999988888
No 276
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.96 E-value=1.3 Score=30.17 Aligned_cols=31 Identities=10% Similarity=0.207 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004093 61 KFWKQYVEAYMAVNNDDATKQLFSRCLLICL 91 (774)
Q Consensus 61 ~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p 91 (774)
++|...+..+...|++++|...|++|+...|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5788899999999999999999999987644
No 277
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.66 E-value=12 Score=38.49 Aligned_cols=86 Identities=14% Similarity=0.099 Sum_probs=68.9
Q ss_pred chHHHHHHHHHHHHhc--------CCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYL--------YHY----------PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAE 328 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~--------p~~----------~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~ 328 (774)
.++.+...|+.|+.+. |.. ..+..+|++++...|++-++++.....++..|.+...+|..|.
T Consensus 193 ~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRak 272 (329)
T KOG0545|consen 193 RYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAK 272 (329)
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 4455556666665542 443 3577788899989999999999999999999999999999988
Q ss_pred HHHHhCCHHHHHHHHHHHhcCCCC
Q 004093 329 LEESRGAIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 329 l~e~~g~~e~A~~iyek~l~~~~~ 352 (774)
.....=+.++|+.-|.+++...|.
T Consensus 273 Ahaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 273 AHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHhhcCHHHHHHHHHHHHhcChh
Confidence 888877888999999999998876
No 278
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.59 E-value=0.73 Score=49.23 Aligned_cols=91 Identities=19% Similarity=0.013 Sum_probs=64.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC
Q 004093 291 DYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEG 370 (774)
Q Consensus 291 ~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~ 370 (774)
+..+++ ..|.+++|++.|.+||..+|.+..++...+.++..+++...|+.-+..++.++++. +.-|-......+..++
T Consensus 120 ~A~eAl-n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-a~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 120 QASEAL-NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-AKGYKFRGYAERLLGN 197 (377)
T ss_pred HHHHHh-cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc-ccccchhhHHHHHhhc
Confidence 333333 45778999999999999999999999888888888888888888899999888762 3222222233344566
Q ss_pred HHHHHHHHHHHhc
Q 004093 371 VEAARKYFLDARK 383 (774)
Q Consensus 371 ~~~Ar~if~~al~ 383 (774)
+..|...|..+.+
T Consensus 198 ~e~aa~dl~~a~k 210 (377)
T KOG1308|consen 198 WEEAAHDLALACK 210 (377)
T ss_pred hHHHHHHHHHHHh
Confidence 6666666665544
No 279
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.10 E-value=1.8 Score=29.04 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHHHHHHcCC
Q 004093 404 KDPKLAHNVFEAGLKRFMH 422 (774)
Q Consensus 404 gd~~~A~~ife~al~~~p~ 422 (774)
|+.++|+++|++.++.+|+
T Consensus 14 g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 14 GDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp CHHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHHCcC
Confidence 5666666666666666665
No 280
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=84.76 E-value=16 Score=37.18 Aligned_cols=67 Identities=19% Similarity=0.125 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhCCH-------HHHHHHHHHHhcCCCC-----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 004093 321 MLRYAFAELEESRGAI-------AAAKKLYESLLTDSVN-----TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF 387 (774)
Q Consensus 321 ~l~~~~a~l~e~~g~~-------e~A~~iyek~l~~~~~-----~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~ 387 (774)
.+++..|-+++..++. ..|...|++++..... +...+....+.+.+|.|+.++|...|.+++..+..
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 3445555555555543 3455555555543322 11234445567777788888888888888776654
No 281
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.62 E-value=16 Score=36.46 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCC-C--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004093 359 IQFIRFLRRTEGVEAARKYFLDARKSPNF-T--YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLS 435 (774)
Q Consensus 359 ~~~a~~~~r~~~~~~Ar~if~~al~~~~~-~--~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~ 435 (774)
+..+.-+...+++++|...++.++..+.. . .-+-++.|.+.... |.++.|.++++.-... .-.+.+...-+|.+.
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~-~k~D~AL~~L~t~~~~-~w~~~~~elrGDill 170 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQ-KKADAALKTLDTIKEE-SWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHh-hhHHHHHHHHhccccc-cHHHHHHHHhhhHHH
Confidence 44555566677778888877777754432 1 22333455555554 6667666665432211 011233456678888
Q ss_pred hcCChhHHHHHHHHHHhcCC
Q 004093 436 RLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 436 ~~gd~~~Ar~lfEraL~~~p 455 (774)
..|+-.+||.-|++++...+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 171 AKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HcCchHHHHHHHHHHHHccC
Confidence 88888888888888888764
No 282
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=84.41 E-value=16 Score=39.08 Aligned_cols=56 Identities=21% Similarity=0.193 Sum_probs=39.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q 004093 293 ATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS 350 (774)
Q Consensus 293 a~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~ 350 (774)
.+--++..+..+-++.-..|+..+|++...++.+| ++....+.+|.++|+++++..
T Consensus 191 MQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLA--EEEa~Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 191 MQKAWRERNPPARIKAAYQALEINNECATAYVLLA--EEEATTIVDAERLFKQALKAG 246 (556)
T ss_pred HHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhh--hhhhhhHHHHHHHHHHHHHHH
Confidence 33445556666677777888888888887776655 344456778888888888743
No 283
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=84.21 E-value=11 Score=46.70 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhcC-CCCCCchhchHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 004093 245 WIAWKRLLTFEKGN-PQRIDTASSNKRIIFTYEQCLMYLY------HYPDIWYDYATWNAKSGSIDAAIKVFQRALKA-- 315 (774)
Q Consensus 245 ~~lW~~yi~~Ek~n-~~~~d~~~~~~r~~~~yeraL~~~p------~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~-- 315 (774)
+..|..||.|...+ +.+.+ ...-+..+.++|+.... ..+.+-..|.. +.......+++.+|......
T Consensus 34 l~~w~ryi~wv~~~~~~~~~---~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~-~~~~e~~~d~~d~f~~m~~kgI 109 (974)
T KOG1166|consen 34 LDKWLRYIEWVLEVYPEGKE---NQSLLRNLLERCLEELEDLKRYRNDPRFLILWCS-LELREELQDAEDFFSYLENKGI 109 (974)
T ss_pred hhhhHhHhhhhhhccccCCc---hhhhHHHHHHHHHHhccchhhccccHHHHHHHHh-HHHHHHHhhHHHHHHHHHhccc
Confidence 35899999998753 22221 12334456777776543 23331111111 23344567788888888764
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCH
Q 004093 316 LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGV 371 (774)
Q Consensus 316 ~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~ 371 (774)
......++..|+.+++..+.+.+|..+|+..++......-.+..+|..|..|.+.-
T Consensus 110 g~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~r~ 165 (974)
T KOG1166|consen 110 GTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLMRQ 165 (974)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Confidence 56778889999999999999999999999999876553445777777888776543
No 284
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=84.20 E-value=2.3 Score=47.54 Aligned_cols=85 Identities=13% Similarity=-0.033 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 004093 268 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 347 (774)
Q Consensus 268 ~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l 347 (774)
+..++..|-++|..+|+...+|-+-+..+.+.+++-.|..=+.+||+..|.....++.-|......+.+.+|...|++..
T Consensus 20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~ 99 (476)
T KOG0376|consen 20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVK 99 (476)
T ss_pred HHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhh
Confidence 34444455555555555555555544444555555555555555555555444444444444444455555555555555
Q ss_pred cCCCC
Q 004093 348 TDSVN 352 (774)
Q Consensus 348 ~~~~~ 352 (774)
...|+
T Consensus 100 ~l~Pn 104 (476)
T KOG0376|consen 100 KLAPN 104 (476)
T ss_pred hcCcC
Confidence 44443
No 285
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=83.81 E-value=70 Score=37.41 Aligned_cols=83 Identities=19% Similarity=0.133 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 366 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~ 366 (774)
+-....+.++.+...+--|.++|.+.=. . -...+++...+++.+|..+-++.-+.. ..+|+.|++++.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD----~----ksiVqlHve~~~W~eAFalAe~hPe~~----~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD----L----KSLVQLHVETQRWDEAFALAEKHPEFK----DDVYMPYAQWLA 815 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc----H----HHHhhheeecccchHhHhhhhhCcccc----ccccchHHHHhh
Confidence 3344445555555555555555554210 0 023345556677888777766654443 348899999999
Q ss_pred HhcCHHHHHHHHHHH
Q 004093 367 RTEGVEAARKYFLDA 381 (774)
Q Consensus 367 r~~~~~~Ar~if~~a 381 (774)
...++++|.+.|-+|
T Consensus 816 E~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhhhHHHHHHHHHHh
Confidence 999899988888765
No 286
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.51 E-value=1.8e+02 Score=39.36 Aligned_cols=289 Identities=14% Similarity=0.148 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhc----CCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHH
Q 004093 93 VPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHV----GSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAY 168 (774)
Q Consensus 93 ~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~v----g~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vY 168 (774)
.+-|..-+......... ..-.-++.|++... +.+-..+.+|..++++... .|+.+.|....
T Consensus 1629 sd~W~~Rl~~tq~s~~~------~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~---------aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1629 SDNWKNRLERTQPSFRI------KEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARL---------AGHLQRAQNAL 1693 (2382)
T ss_pred chhHHHHHHHhchhHHH------HhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHh---------cccHHHHHHHH
Confidence 36777776665443321 11112233333322 2233456899999999753 57888887777
Q ss_pred HHHHcccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCCCCCCchhHHHHH
Q 004093 169 QRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNML--AVPPTGSYKEEQQWI 246 (774)
Q Consensus 169 qral~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~--~~pP~~~~~~~~q~~ 246 (774)
-+|...- ...++.+.+++.=. .++-..|..++. +.+..+.. +-|++.... .....
T Consensus 1694 l~A~e~r---~~~i~~E~AK~lW~-------------~gd~~~Al~~Lq------~~l~~~~~~~~~~~~~~p~-~~n~~ 1750 (2382)
T KOG0890|consen 1694 LNAKESR---LPEIVLERAKLLWQ-------------TGDELNALSVLQ------EILSKNFPDLHTPYTDTPQ-SVNLL 1750 (2382)
T ss_pred Hhhhhcc---cchHHHHHHHHHHh-------------hccHHHHHHHHH------HHHHhhcccccCCccccch-hhhhh
Confidence 7776432 12333333333211 223333444433 23333322 223222211 11122
Q ss_pred HHH----HHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH------------cCCHHH---HHH
Q 004093 247 AWK----RLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAK------------SGSIDA---AIK 307 (774)
Q Consensus 247 lW~----~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~------------~g~~e~---A~~ 307 (774)
+.+ .+-.|..... + ...+.++..|..+..++|...+-++.+|.++.+ +|++.. ++.
T Consensus 1751 i~~~~~L~~~~~~~es~-n----~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~ 1825 (2382)
T KOG0890|consen 1751 IFKKAKLKITKYLEESG-N----FESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIY 1825 (2382)
T ss_pred hhhhHHHHHHHHHHHhc-c----hhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHH
Confidence 222 1112322111 1 234567889999999999777777777766653 455554 566
Q ss_pred HHHHHHHh--------CCCCHHHHHHHHHHHHH----------hCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc
Q 004093 308 VFQRALKA--------LPDSEMLRYAFAELEES----------RGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE 369 (774)
Q Consensus 308 v~erAl~~--------~P~~~~l~~~~a~l~e~----------~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~ 369 (774)
.|.+++.. .|.-..||+-++..... .++.+...+..+.+++.-|. -..+..|.++..|.-
T Consensus 1826 ~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~--Y~f~ta~sQLlSRic 1903 (2382)
T KOG0890|consen 1826 FFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPT--YQFYTAYSQLLSRIC 1903 (2382)
T ss_pred HHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcc--hHHHHHHHHHHHHHc
Confidence 66788754 35555678765432211 12333444556666666653 345567777777732
Q ss_pred -CHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHH
Q 004093 370 -GVEAARKYFLDAR----KSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYI 427 (774)
Q Consensus 370 -~~~~Ar~if~~al----~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~ 427 (774)
..++.-.+.++.+ ..-+ .--.|...|.+-.......+++..|++++....++...++
T Consensus 1904 H~~~dV~~vl~~II~~l~~~YP-qq~lW~~~a~~kS~~p~R~~R~keIL~k~~~~~~~~~~l~ 1965 (2382)
T KOG0890|consen 1904 HPNQDVARVLKHIIAKLVLAYP-QQTLWQSAALSKSNVPSRVERCKEILTKSRRQKPDYKKLL 1965 (2382)
T ss_pred CCchHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCccHHHHH
Confidence 1233333333333 2222 2456776666644444567778888887777666655554
No 287
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.49 E-value=1.1e+02 Score=36.59 Aligned_cols=133 Identities=15% Similarity=0.115 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--CHHHH----HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHH
Q 004093 285 YPDIWYDYATWNA-KSGSIDAAIKVFQRALKALPD--SEMLR----YAFAELEESRGAIAAAKKLYESLLTDSVNTTALA 357 (774)
Q Consensus 285 ~~~iW~~ya~~l~-~~g~~e~A~~v~erAl~~~P~--~~~l~----~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~ 357 (774)
...+.+.||..+. ...+++.|...+++|+..+-. -.++. +.++.++.+.+... |....+++++.........
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 3467888998887 577899999999999987743 33332 34466776666555 8888888887654322334
Q ss_pred HHHHHHHHH-----HhcCHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHH
Q 004093 358 HIQFIRFLR-----RTEGVEAARKYFLDARKSP--NFTYHVYVAYALMAFCQ---DKDPKLAHNVFEAGLK 418 (774)
Q Consensus 358 ~~~~a~~~~-----r~~~~~~Ar~if~~al~~~--~~~~~~~i~~A~lE~~~---~gd~~~A~~ife~al~ 418 (774)
|....+|.+ ..++...|...++...... ...+.+++.+..++... .+..+.+.+...++..
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 443333331 2368888999998887654 34566666544433221 2545566666666543
No 288
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.31 E-value=1.9e+02 Score=39.30 Aligned_cols=229 Identities=17% Similarity=0.217 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----
Q 004093 244 QWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKAL-PD---- 318 (774)
Q Consensus 244 q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~-P~---- 318 (774)
..+.|..+.+..+.+ +..++|..+.=.|... .-+.+....|+++++.|+...|+.+++..+..+ |+
T Consensus 1669 ~ge~wLqsAriaR~a-------G~~q~A~nall~A~e~--r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~ 1739 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLA-------GHLQRAQNALLNAKES--RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTP 1739 (2382)
T ss_pred hHHHHHHHHHHHHhc-------ccHHHHHHHHHhhhhc--ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCC
Confidence 356888888888865 4556654444444433 378999999999999999999999999999754 33
Q ss_pred ------CHH------HHHHHHHHHHHhCCH--HHHHHHHHHHhcCCCCC-cHHHHHH--HHHHHH--------HhcCHHH
Q 004093 319 ------SEM------LRYAFAELEESRGAI--AAAKKLYESLLTDSVNT-TALAHIQ--FIRFLR--------RTEGVEA 373 (774)
Q Consensus 319 ------~~~------l~~~~a~l~e~~g~~--e~A~~iyek~l~~~~~~-~~~~~~~--~a~~~~--------r~~~~~~ 373 (774)
+.. ..+.++.+.+..+++ +...+.|..++...+.. ....++. |..++. +.|++..
T Consensus 1740 ~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~ 1819 (2382)
T KOG0890|consen 1740 YTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLS 1819 (2382)
T ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHH
Confidence 111 233556666666765 35678899999887731 1112221 333332 2345555
Q ss_pred ---HHHHHHHHhcCCCCC--------HHHHHHHHHHHHh---c------CCCHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004093 374 ---ARKYFLDARKSPNFT--------YHVYVAYALMAFC---Q------DKDPKLAHNVFEAGLKRFMHEPAYILEYADF 433 (774)
Q Consensus 374 ---Ar~if~~al~~~~~~--------~~~~i~~A~lE~~---~------~gd~~~A~~ife~al~~~p~~~~l~~~ya~~ 433 (774)
+...|.+++..+.+. ...|+.++.-.+. . .++.+.--+..+.+++..|. ..++-.|.++
T Consensus 1820 ~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~-Y~f~ta~sQL 1898 (2382)
T KOG0890|consen 1820 LLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPT-YQFYTAYSQL 1898 (2382)
T ss_pred HHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 455567888755431 4456664332111 0 11222333444555555553 3556678888
Q ss_pred HHhcCC-hhHH----HHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 434 LSRLND-DRNI----RALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 434 l~~~gd-~~~A----r~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
..+.-. .++. +.+.-+.+..+| ...+|.....+-+ +..+..+|+.+.+.
T Consensus 1899 lSRicH~~~dV~~vl~~II~~l~~~YP---qq~lW~~~a~~kS------~~p~R~~R~keIL~ 1952 (2382)
T KOG0890|consen 1899 LSRICHPNQDVARVLKHIIAKLVLAYP---QQTLWQSAALSKS------NVPSRVERCKEILT 1952 (2382)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHhCc---hHHHHHHHHHHhc------ccHHHHHHHHHHHH
Confidence 877532 2223 334444445677 4679987766532 33445556666665
No 289
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.24 E-value=13 Score=36.79 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLT 348 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~---~~l~~~~a~l~e~~g~~e~A~~iyek~l~ 348 (774)
..|..++.++.+.|+.++|.+.|.++...+-.. .++++....+....+++..+....+++-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566788889999999999999999988876433 45666777777777888877777766654
No 290
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=83.23 E-value=1.7 Score=43.96 Aligned_cols=54 Identities=20% Similarity=0.412 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE 320 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~ 320 (774)
...-+.++|.|++..-|.+..-|+.++.+.++.|+++.|.+.|++.++..|.+.
T Consensus 10 D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 10 DAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred ChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 445667899999999999999999999999999999999999999999999764
No 291
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=82.49 E-value=86 Score=34.82 Aligned_cols=52 Identities=10% Similarity=0.024 Sum_probs=31.6
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004093 32 SALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC 90 (774)
Q Consensus 32 ~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~ 90 (774)
.++.++...-..+|+.|++.-... ...+-.++..+||----..-|+++|+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeD-------l~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTED-------LSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchH-------HHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 455567777788888888876555 3333444455555444455566666654
No 292
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.56 E-value=7.8 Score=41.51 Aligned_cols=93 Identities=15% Similarity=-0.058 Sum_probs=61.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHhcCCCCC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 004093 327 AELEESRGAIAAAKKLYESLLTDSVNT---TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQD 403 (774)
Q Consensus 327 a~l~e~~g~~e~A~~iyek~l~~~~~~---~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~ 403 (774)
++.+...++|..|+..|.+.|+....+ +.-+|...+....-.|++..|+.=..+|++..++....|+.-|...+.+
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL- 166 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL- 166 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH-
Confidence 444455566677777777777543321 2345566666666677778888878888887777778888777766655
Q ss_pred CCHHHHHHHHHHHHHHc
Q 004093 404 KDPKLAHNVFEAGLKRF 420 (774)
Q Consensus 404 gd~~~A~~ife~al~~~ 420 (774)
+..+.|....+.++...
T Consensus 167 e~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 56667777777765543
No 293
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.42 E-value=78 Score=37.25 Aligned_cols=118 Identities=15% Similarity=0.111 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHh----C-CHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH-h
Q 004093 300 GSIDAAIKVFQRALKAL-----PDSEMLRYAFAELEESR----G-AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR-T 368 (774)
Q Consensus 300 g~~e~A~~v~erAl~~~-----P~~~~l~~~~a~l~e~~----g-~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r-~ 368 (774)
.|.+.|...|+.|.... -........++.++... . +.+.|..+|.++-..... .+...+..+..... .
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~ 341 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKE 341 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCcc
Confidence 47788888888887620 00111223445555443 2 556677777776665543 22222222222211 1
Q ss_pred cCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHc
Q 004093 369 EGVEAARKYFLDARKSPNFTYHVYVAYALMAFC---QDKDPKLAHNVFEAGLKRF 420 (774)
Q Consensus 369 ~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~---~~gd~~~A~~ife~al~~~ 420 (774)
.++..|-++|.+|.+.+. ...++..+.+... +..+...|...|.++..+.
T Consensus 342 ~d~~~A~~yy~~Aa~~G~--~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 342 RDYRRAFEYYSLAAKAGH--ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred ccHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 345677777777766543 3444444544322 1235666777777666655
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=80.81 E-value=2.8 Score=29.34 Aligned_cols=27 Identities=7% Similarity=0.208 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004093 63 WKQYVEAYMAVNNDDATKQLFSRCLLI 89 (774)
Q Consensus 63 W~~y~~~e~~~~n~~~a~~ifeRaL~~ 89 (774)
|..++.++...|++++|..+|+++|..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778999999999999999999997754
No 295
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=79.73 E-value=1e+02 Score=33.82 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=16.7
Q ss_pred CCCCCCCCHHHHHHHHhcCCCCC
Q 004093 644 AVEGPTPNVDIVLSICLQSDIPT 666 (774)
Q Consensus 644 ~~~gp~~~vd~~~~~~~~~~~~~ 666 (774)
.|+--.-.||.|+-|=...++|+
T Consensus 443 TfntnSls~d~L~GinsDI~~~s 465 (518)
T KOG1941|consen 443 TFNTNSLSVDGLLGINSDILLPS 465 (518)
T ss_pred hccccchhhhhhhccccccccch
Confidence 45556667888887777777777
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=79.32 E-value=9.5 Score=37.64 Aligned_cols=66 Identities=15% Similarity=0.262 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 426 YILEYADFLSRLNDDRNIRALFERALSSLP-PEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 426 l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p-~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
.+...++|+.+.||.++|.+.|.++...+. .....+++..++..-..+||+..+.+...++.....
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 456778888888888888888888887654 334567888888877778888888888888877775
No 297
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=78.82 E-value=1.5e+02 Score=35.41 Aligned_cols=30 Identities=7% Similarity=-0.120 Sum_probs=19.6
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWN 296 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l 296 (774)
.-.|+..+.++++..+-...++|...+-.+
T Consensus 126 iD~rL~~iv~rmi~kcl~d~e~~~aiGia~ 155 (929)
T KOG2062|consen 126 IDQRLRDIVERMIQKCLDDNEYKQAIGIAF 155 (929)
T ss_pred CCHHHHHHHHHHHHHhhhhhHHHHHHhHHh
Confidence 345666777777777666667776665544
No 298
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.96 E-value=59 Score=33.66 Aligned_cols=93 Identities=10% Similarity=0.018 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHH----------HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 004093 291 DYATWNAKSGSIDAAIKVFQRALKA--------LPDSEM----------LRYAFAELEESRGAIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 291 ~ya~~l~~~g~~e~A~~v~erAl~~--------~P~~~~----------l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~ 352 (774)
+-+.-+.+.|++.+|..-|..|+.. -|.+.. |..+|+..+...|++-++.+.-...++..+.
T Consensus 183 q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~ 262 (329)
T KOG0545|consen 183 QEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG 262 (329)
T ss_pred HhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc
Confidence 3345566778888888888888753 233322 3334444444445555555555555555543
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 004093 353 TTALAHIQFIRFLRRTEGVEAARKYFLDARKS 384 (774)
Q Consensus 353 ~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~ 384 (774)
+..+++..++.....=+.++|+.-|++++..
T Consensus 263 -nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 263 -NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred -hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3445554444444444445555555555544
No 299
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.52 E-value=69 Score=37.05 Aligned_cols=151 Identities=17% Similarity=0.104 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHHhC------------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC-----CC------------
Q 004093 301 SIDAAIKVFQRALKAL------------PDSEMLRYAFAELEESRGAIAAAKKLYESLLTD-----SV------------ 351 (774)
Q Consensus 301 ~~e~A~~v~erAl~~~------------P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~-----~~------------ 351 (774)
.+++|...|.-|+... |-...-.+..+++...+|+.+.+..+.+++|=. .|
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 4567777777776543 333444567888888889888777777666621 11
Q ss_pred ----C--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC-C---HHHHHHHHHHHHhcCCCHHHHHHHHHHH-----
Q 004093 352 ----N--TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF-T---YHVYVAYALMAFCQDKDPKLAHNVFEAG----- 416 (774)
Q Consensus 352 ----~--~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~-~---~~~~i~~A~lE~~~~gd~~~A~~ife~a----- 416 (774)
. .+-++...||+.+.+.|.+..|..+.+-.++..+. . .-..+..-.+ + ..++.=-+..++..
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~AL--r-areYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYAL--R-AREYQWIIELSNEPENMNK 409 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHH--H-HHhHHHHHHHHHHHHhhcc
Confidence 0 01134467888888899999999999988875433 2 2222321111 1 23444444555444
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCC
Q 004093 417 LKRFMHEPAYILEYADFLSRLND---DRNIRALFERALSSLP 455 (774)
Q Consensus 417 l~~~p~~~~l~~~ya~~l~~~gd---~~~Ar~lfEraL~~~p 455 (774)
+...|+ -.|-...|.|+.+.++ -..|+..+.+|+..+|
T Consensus 410 l~~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 410 LSQLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HhhcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 223444 3455677778777766 4678899999999887
No 300
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=77.46 E-value=52 Score=37.50 Aligned_cols=134 Identities=15% Similarity=0.115 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 004093 286 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 365 (774)
Q Consensus 286 ~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~ 365 (774)
.+.....+.|+.++|-.+.|+++.+ +....|.+| .+.|+++.|.++-+. .. ....|.++++.+
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLA---l~lg~L~~A~~~a~~---~~---~~~~W~~Lg~~A 357 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVT--------DPDHRFELA---LQLGNLDIALEIAKE---LD---DPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHH---HHCT-HHHHHHHCCC---CS---THHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHH---HhcCCHHHHHHHHHh---cC---cHHHHHHHHHHH
Confidence 3446667888888888877765432 334444333 467888877665322 11 357999999999
Q ss_pred HHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHH
Q 004093 366 RRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRA 445 (774)
Q Consensus 366 ~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~ 445 (774)
.++|+++-|...|+++-. +.... +.|...|+.+.-.++-+.+...-..+..|.. ..-.||.++...
T Consensus 358 L~~g~~~lAe~c~~k~~d-----~~~L~----lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~-----~~~lgd~~~cv~ 423 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD-----FSGLL----LLYSSTGDREKLSKLAKIAEERGDINIAFQA-----ALLLGDVEECVD 423 (443)
T ss_dssp HHTTBHHHHHHHHHHCT------HHHHH----HHHHHCT-HHHHHHHHHHHHHTT-HHHHHHH-----HHHHT-HHHHHH
T ss_pred HHcCCHHHHHHHHHhhcC-----ccccH----HHHHHhCCHHHHHHHHHHHHHccCHHHHHHH-----HHHcCCHHHHHH
Confidence 999999999999999643 22221 2344468988888877776654433333221 122477777776
Q ss_pred HHHHH
Q 004093 446 LFERA 450 (774)
Q Consensus 446 lfEra 450 (774)
++.++
T Consensus 424 lL~~~ 428 (443)
T PF04053_consen 424 LLIET 428 (443)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 66553
No 301
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.22 E-value=4.4 Score=25.69 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004093 61 KFWKQYVEAYMAVNNDDATKQLFSRCLLICL 91 (774)
Q Consensus 61 ~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p 91 (774)
..|..++..+...++++.|...|++++...|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4678888888889999999999999887654
No 302
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=76.73 E-value=1.1e+02 Score=38.34 Aligned_cols=59 Identities=17% Similarity=0.335 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcc--c-CccHHHHHHHHHHHH
Q 004093 114 GQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT--P-THHVEQLWKDYENFE 190 (774)
Q Consensus 114 ~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~--P-~~~~e~l~~~y~~fE 190 (774)
.++...+-|+.||.++-.- ....|.+..+|.++. .+|..|+.+ | ......++..|+...
T Consensus 888 ~ID~~L~ry~~AL~hLs~~--~~~~~~e~~n~I~kh----------------~Ly~~aL~ly~~~~e~~k~i~~~ya~hL 949 (1265)
T KOG1920|consen 888 KIDDYLKRYEDALSHLSEC--GETYFPECKNYIKKH----------------GLYDEALALYKPDSEKQKVIYEAYADHL 949 (1265)
T ss_pred eHHHHHHHHHHHHHHHHHc--CccccHHHHHHHHhc----------------ccchhhhheeccCHHHHHHHHHHHHHHH
Confidence 3677888899888876321 134677777776543 577788764 3 223355666666553
No 303
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.39 E-value=16 Score=39.24 Aligned_cols=97 Identities=15% Similarity=0.025 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004093 358 HIQFIRFLRRTEGVEAARKYFLDARK----SPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADF 433 (774)
Q Consensus 358 ~~~~a~~~~r~~~~~~Ar~if~~al~----~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~ 433 (774)
|-.-++.+....+++.|+..|.++++ ++....-.|.+-|...+.+ |++-.|++=..++++..|+...-++.=+..
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l-~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYL-GNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 33445566667889999999999997 3444567788877777776 999999999999999999988777777888
Q ss_pred HHhcCChhHHHHHHHHHHhcCC
Q 004093 434 LSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 434 l~~~gd~~~Ar~lfEraL~~~p 455 (774)
+..++.+..|..+.|..+....
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhhhH
Confidence 8888888888888888877543
No 304
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=75.73 E-value=26 Score=30.42 Aligned_cols=68 Identities=18% Similarity=0.055 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHH
Q 004093 410 HNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLD 477 (774)
Q Consensus 410 ~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~ 477 (774)
..-++..+...|++.+.....+..+...|+++.|...+-..+...+.......=..++.+-...|+-.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 45578888899999999999999999999999999999999987653322333344444444567643
No 305
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.67 E-value=2.1 Score=45.87 Aligned_cols=86 Identities=15% Similarity=-0.032 Sum_probs=73.3
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
.+..++..|-+++.++|....++..-+..+.+.+....|+.=|..|+..+|++..-+-..+..+..+|++++|...+..+
T Consensus 129 ~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a 208 (377)
T KOG1308|consen 129 EFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALA 208 (377)
T ss_pred chhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHH
Confidence 35566788999999999999999999999999999999999999999999988665544455567789999999999998
Q ss_pred hcCCCC
Q 004093 347 LTDSVN 352 (774)
Q Consensus 347 l~~~~~ 352 (774)
+++.-+
T Consensus 209 ~kld~d 214 (377)
T KOG1308|consen 209 CKLDYD 214 (377)
T ss_pred Hhcccc
Confidence 887654
No 306
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=75.61 E-value=17 Score=38.54 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=51.8
Q ss_pred ChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-------CCCHHHHHHHHHH
Q 004093 37 PVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLI-------CLQVPLWRCYIRF 102 (774)
Q Consensus 37 ~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~-------~p~~~lW~~Yl~~ 102 (774)
.++.+...+++.+..+|.+ ...|...++.++.+|+...|+..|++.=.. .|..++|..|.+-
T Consensus 168 ~~~~~~~~l~~Li~~dp~~----E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 168 RADAVIEHLERLIELDPYD----EPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred cHHHHHHHHHHHHhcCccc----hHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 5778889999999999999 999999999999999999999999876442 2555666666665
No 307
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=74.37 E-value=1.7e+02 Score=34.45 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004093 404 KDPKLAHNVFEAGLKRFMH-EPAYILEYADFLSRLNDDRNIRALFERALS 452 (774)
Q Consensus 404 gd~~~A~~ife~al~~~p~-~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~ 452 (774)
++...|..+-|+ .|+ -+++++-|++|+.+..++++|.+.|-+|=.
T Consensus 787 ~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 787 QRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred ccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 566666655443 333 235667788887777777777777776643
No 308
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.32 E-value=1.1e+02 Score=35.89 Aligned_cols=144 Identities=15% Similarity=0.047 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HhCCHHHHHHHHHHHhc-------CCCCCcHHHHHHHHHHHHHh--
Q 004093 303 DAAIKVFQRALKALPDSEMLRYAFAELEE-----SRGAIAAAKKLYESLLT-------DSVNTTALAHIQFIRFLRRT-- 368 (774)
Q Consensus 303 e~A~~v~erAl~~~P~~~~l~~~~a~l~e-----~~g~~e~A~~iyek~l~-------~~~~~~~~~~~~~a~~~~r~-- 368 (774)
..|.+.|+.+....--... ..++.++. ...|.+.|...|+.+.+ .. .+.+...++.++.+.
T Consensus 229 ~~a~~~~~~~a~~g~~~a~--~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQ--YALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hHHHHHHHHHHhhcchHHH--HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4566666666554222222 22333322 23567778887777766 22 122445556555553
Q ss_pred --c-CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHhc---CC
Q 004093 369 --E-GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQD--KDPKLAHNVFEAGLKRFMHEPAYILEYADF-LSRL---ND 439 (774)
Q Consensus 369 --~-~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~--gd~~~A~~ife~al~~~p~~~~l~~~ya~~-l~~~---gd 439 (774)
. +.+.|..+|.++...+.......+.... ..-. .|+.+|.+.|..|.+.--...-++ .+.+ +... -+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~--~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~--la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNPDAQYLLGVLY--ETGTKERDYRRAFEYYSLAAKAGHILAIYR--LALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCchHHHHHHHHH--HcCCccccHHHHHHHHHHHHHcCChHHHHH--HHHHHHhCCCcCCC
Confidence 2 6788999999999987765555554333 2222 567899999999987532222222 2222 2222 36
Q ss_pred hhHHHHHHHHHHhcCC
Q 004093 440 DRNIRALFERALSSLP 455 (774)
Q Consensus 440 ~~~Ar~lfEraL~~~p 455 (774)
..+|..+|.++-++..
T Consensus 380 ~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGN 395 (552)
T ss_pred HHHHHHHHHHHHHccC
Confidence 7999999999998764
No 309
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=74.19 E-value=37 Score=34.13 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=58.0
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC----CHHHHH
Q 004093 354 TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF-TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH----EPAYIL 428 (774)
Q Consensus 354 ~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~-~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~----~~~l~~ 428 (774)
+..+|..|.+ -+-+.|+..|-++-+.+.. +......+|.+ ....|.++|+.+|-+++..... +++++.
T Consensus 110 P~llYy~Wsr-----~~d~~A~~~fL~~E~~~~l~t~elq~aLAty--Y~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~ 182 (203)
T PF11207_consen 110 PYLLYYHWSR-----FGDQEALRRFLQLEGTPELETAELQYALATY--YTKRDPEKTIQLLLRALELSNPDDNFNPEILK 182 (203)
T ss_pred ccHHHHHhhc-----cCcHHHHHHHHHHcCCCCCCCHHHHHHHHHH--HHccCHHHHHHHHHHHHHhcCCCCCCCHHHHH
Confidence 3455555543 2446777778777766554 45666666654 2246888899999888886432 578888
Q ss_pred HHHHHHHhcCChhHHH
Q 004093 429 EYADFLSRLNDDRNIR 444 (774)
Q Consensus 429 ~ya~~l~~~gd~~~Ar 444 (774)
..+....++++++.|-
T Consensus 183 sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 183 SLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHhcchhhhh
Confidence 8888888888888775
No 310
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=73.85 E-value=1e+02 Score=32.38 Aligned_cols=170 Identities=9% Similarity=0.054 Sum_probs=108.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHH-HHH
Q 004093 298 KSGSIDAAIKVFQRALKALPDSEMLRYAFAELEES-RGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVE-AAR 375 (774)
Q Consensus 298 ~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~-~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~-~Ar 375 (774)
+......|.++-+.+|..+|.+-.+|...-.++.. ..++.+-.+.+...+..+|. +-++|...--+..-.++.. +-.
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcccchH
Confidence 34456789999999999999998888554444443 34566667788888888876 5689987766666677666 556
Q ss_pred HHHHHHhcCCCCCHHHHHH--HHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh--cCC-----hhHHHHH
Q 004093 376 KYFLDARKSPNFTYHVYVA--YALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSR--LND-----DRNIRAL 446 (774)
Q Consensus 376 ~if~~al~~~~~~~~~~i~--~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~--~gd-----~~~Ar~l 446 (774)
.+.++++.....++|+|.. |... .. ++++.-...-...++..--+-..|..-. |.+. .|- .+.-..+
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r--~F-~~~~~EL~y~~~Lle~Di~NNSAWN~Ry-fvi~~~~~~~~~~~le~El~y 209 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLR--FF-KDYEDELAYADELLEEDIRNNSAWNQRY-FVITNTKGVISKAELERELNY 209 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHH--HH-hhHHHHHHHHHHHHHHhhhccchhheee-EEEEeccCCccHHHHHHHHHH
Confidence 6778888877777999875 3332 22 5677767766677765443334443111 1111 111 1233445
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHH-hC
Q 004093 447 FERALSSLPPEESIEVWKRFTQFEQM-YG 474 (774)
Q Consensus 447 fEraL~~~p~e~~~~lw~~~~~fE~~-~G 474 (774)
-...|...| ....-|+-..-+-.. -|
T Consensus 210 t~~~I~~vP--~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 210 TKDKILLVP--NNESAWNYLKGLLELDSG 236 (318)
T ss_pred HHHHHHhCC--CCccHHHHHHHHHHhccC
Confidence 556666677 456778776666554 44
No 311
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.07 E-value=16 Score=41.90 Aligned_cols=85 Identities=24% Similarity=0.180 Sum_probs=43.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHH
Q 004093 299 SGSIDAAIKVFQRALKALPDSE-MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKY 377 (774)
Q Consensus 299 ~g~~e~A~~v~erAl~~~P~~~-~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~i 377 (774)
.|+...|.+.+.+|+..-|... .-...+|.++...|....|..++.+++....+ .++.++..++++.-..+++.|.+.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s-epl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS-EPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc-CchHHHhcchhHHHHhhhHHHHHH
Confidence 3455555555555555555321 12234555555555445555555555555432 334444455555555555555555
Q ss_pred HHHHhcC
Q 004093 378 FLDARKS 384 (774)
Q Consensus 378 f~~al~~ 384 (774)
|++|++.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 5555554
No 312
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=73.00 E-value=2.3e+02 Score=34.65 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=15.1
Q ss_pred ccCChhhHHHHHHHHHHhCCCC
Q 004093 34 LHLPVAQAAPIYEQLLSVFPTA 55 (774)
Q Consensus 34 ~~~~i~~Ar~~yeral~~~P~~ 55 (774)
..+++.+|....+++++.+|+.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~ 42 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA 42 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc
Confidence 3446677777777777777776
No 313
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=72.28 E-value=18 Score=39.14 Aligned_cols=68 Identities=13% Similarity=0.241 Sum_probs=57.3
Q ss_pred ChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCHHHHHHHHHHHHH
Q 004093 37 PVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC--LQVPLWRCYIRFIRK 105 (774)
Q Consensus 37 ~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~--p~~~lW~~Yl~~~~~ 105 (774)
+-++++.+++.++...|.. .-+..||+-.+.++...|.++.+..||+.|+... |-.+|-...++++..
T Consensus 118 p~eei~~~L~~li~~IP~A-~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~ 187 (353)
T PF15297_consen 118 PKEEILATLSDLIKNIPDA-KKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKM 187 (353)
T ss_pred CHHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 6788999999999999987 3356799999999999999999999999999875 555777777777653
No 314
>PF13041 PPR_2: PPR repeat family
Probab=71.41 E-value=16 Score=27.43 Aligned_cols=42 Identities=10% Similarity=0.104 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCHHHHHHHHH
Q 004093 60 AKFWKQYVEAYMAVNNDDATKQLFSRCLLI--CLQVPLWRCYIR 101 (774)
Q Consensus 60 ~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~--~p~~~lW~~Yl~ 101 (774)
.-.|...+..+.+.|++++|.++|+++... .|+...+...++
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 357888999999999999999999999876 377766665554
No 315
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=69.98 E-value=28 Score=26.98 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004093 288 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLR 323 (774)
Q Consensus 288 iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~ 323 (774)
..+.+|.-+.+.|++++|+...+++++..|++....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 345556667788888888888888888888887654
No 316
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=67.30 E-value=1.4e+02 Score=34.09 Aligned_cols=117 Identities=17% Similarity=0.195 Sum_probs=75.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q 004093 275 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT 354 (774)
Q Consensus 275 yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~ 354 (774)
.+.||.. ..+++..+.+| .+.|+++.|.++.+. -++...|-.+++.-...|+++-|..+|+++-.
T Consensus 311 ~e~AL~~-~~D~~~rFeLA---l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------ 375 (443)
T PF04053_consen 311 PELALQF-VTDPDHRFELA---LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD------ 375 (443)
T ss_dssp HHHHHHH-SS-HHHHHHHH---HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------
T ss_pred HHHHHhh-cCChHHHhHHH---HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------
Confidence 3445543 44567777765 578999888765433 34778999999999999999999999998533
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 004093 355 ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEA 415 (774)
Q Consensus 355 ~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~ 415 (774)
|-.+.-++...|+.+..+++-+.|...... .+-...+.+ .||++...+++..
T Consensus 376 ---~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~--n~af~~~~~----lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 376 ---FSGLLLLYSSTGDREKLSKLAKIAEERGDI--NIAFQAALL----LGDVEECVDLLIE 427 (443)
T ss_dssp ---HHHHHHHHHHCT-HHHHHHHHHHHHHTT-H--HHHHHHHHH----HT-HHHHHHHHHH
T ss_pred ---ccccHHHHHHhCCHHHHHHHHHHHHHccCH--HHHHHHHHH----cCCHHHHHHHHHH
Confidence 223334455678889999998888876543 222222222 3888887777643
No 317
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.82 E-value=82 Score=37.88 Aligned_cols=47 Identities=21% Similarity=0.181 Sum_probs=37.8
Q ss_pred cCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 004093 420 FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQ 468 (774)
Q Consensus 420 ~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~ 468 (774)
.|+++.+|..|+.++.+++..+....++.+|+..+| ...-+...+++
T Consensus 832 l~~~~~~WR~yl~~lskl~~~~~~~~~~tkA~~sCp--W~K~l~md~ie 878 (913)
T KOG1972|consen 832 LPDENSKWRDYLEALSKLLNKERSKAASTKALDSCP--WAKWLEMDVIE 878 (913)
T ss_pred CCcchhHHHHHHHHHHHhhhhhhhHHHHHHHhhcCc--hHHHHHHHHHH
Confidence 467889999999999999999999999999999999 33344433333
No 318
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=66.29 E-value=70 Score=39.88 Aligned_cols=119 Identities=16% Similarity=0.349 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHc----CC-HHHHHHHHHHHHccCC-------CHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHH
Q 004093 60 AKFWKQYVEAYMAV----NN-DDATKQLFSRCLLICL-------QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLS 127 (774)
Q Consensus 60 ~~~W~~y~~~e~~~----~n-~~~a~~ifeRaL~~~p-------~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~ 127 (774)
...|..|+.+.+.. ++ ....+.+.+||+.... +...-+.|+.++.+. ....++.+|..+..
T Consensus 34 l~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~~~~~e-------~~~d~~d~f~~m~~ 106 (974)
T KOG1166|consen 34 LDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCSLELRE-------ELQDAEDFFSYLEN 106 (974)
T ss_pred hhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHhHHHHH-------HHhhHHHHHHHHHh
Confidence 55788888876542 33 6788899999997642 233223333222211 13457777776654
Q ss_pred hcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHhhH
Q 004093 128 HVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSR 195 (774)
Q Consensus 128 ~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~~~e~l~~~y~~fE~~~~~ 195 (774)
. |.-......+..|..+++. .+.+.+|.++|+.+++.--...+.+-..|..|..++.+
T Consensus 107 k-gIg~~lalfYe~~a~~lE~---------k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~r 164 (974)
T KOG1166|consen 107 K-GIGTTLALFYEAYAKHLER---------KEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLMR 164 (974)
T ss_pred c-cccchhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Confidence 3 2223344567777776543 57799999999999965444445666677777766443
No 319
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=65.90 E-value=59 Score=33.14 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 004093 286 PDIWYDYATWNAKSGSI-------DAAIKVFQRALKAL--PDS----EMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 286 ~~iW~~ya~~l~~~g~~-------e~A~~v~erAl~~~--P~~----~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~ 352 (774)
..+++..|-++-..++. ..|.+.|++|+... |.. ..+.+..|++..+.|++++|...|.+++.....
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 45677777666666663 45777777777643 322 456778899999999999999999999987654
No 320
>PRK10941 hypothetical protein; Provisional
Probab=65.79 E-value=53 Score=34.76 Aligned_cols=61 Identities=7% Similarity=-0.034 Sum_probs=53.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q 004093 294 TWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT 354 (774)
Q Consensus 294 ~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~ 354 (774)
..+.+.++++.|..+.++.+...|++..-|.-.+.++.+.|.+..|..-++..++..|.++
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 3566788999999999999999999998888889999999999999999999998888743
No 321
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=65.41 E-value=1.5e+02 Score=34.75 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=63.8
Q ss_pred hcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 004093 368 TEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALF 447 (774)
Q Consensus 368 ~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lf 447 (774)
.+++++|....++-.....+...+.+....+|+.-.+..+.-...|+..+++.|.........+..+. . .-++.++.
T Consensus 322 ~~~l~eal~~~e~~c~~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~--~-~~~~~~Ll 398 (547)
T PF14929_consen 322 GGRLKEALNELEKFCISSTCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQ--K-DYSAEQLL 398 (547)
T ss_pred cccHHHHHHHHHHhccCCCccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhh--h-HHHHHHHH
Confidence 37788888877776666666677777766676654336677788888888888875444433332222 2 55666666
Q ss_pred HHH---HhcCCchhHHHHHHHHHHHHHH-hCCHH
Q 004093 448 ERA---LSSLPPEESIEVWKRFTQFEQM-YGDLD 477 (774)
Q Consensus 448 Era---L~~~p~e~~~~lw~~~~~fE~~-~Gd~~ 477 (774)
|-. +...| +.++|..|..--.+ .++.+
T Consensus 399 e~i~~~l~~~~---s~~iwle~~~~~l~~~~~~~ 429 (547)
T PF14929_consen 399 EMIALHLDLVP---SHPIWLEFVSCFLKNPSRFE 429 (547)
T ss_pred HHHHHHhhcCC---CchHHHHHHHHHHhcccccc
Confidence 633 22333 45777777654444 55554
No 322
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=65.39 E-value=1e+02 Score=34.77 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=23.4
Q ss_pred HHHHHH--HHHHHhcCChhHHHHHHHHHHhcC
Q 004093 425 AYILEY--ADFLSRLNDDRNIRALFERALSSL 454 (774)
Q Consensus 425 ~l~~~y--a~~l~~~gd~~~Ar~lfEraL~~~ 454 (774)
++|+.. |..++..|++.++|.+++|.+..+
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 555544 456778899999999999999854
No 323
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=65.24 E-value=2.6e+02 Score=32.19 Aligned_cols=60 Identities=8% Similarity=0.062 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 348 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~ 348 (774)
-.++..++.+.++ ..++--.+++|.++.|-++...--.++..++. ++-+++...|.+++.
T Consensus 100 mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 100 MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHH
Confidence 3344444445444 22344555555555555555554455555554 444455555555543
No 324
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.23 E-value=33 Score=39.55 Aligned_cols=93 Identities=15% Similarity=0.052 Sum_probs=51.9
Q ss_pred hCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 004093 333 RGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNV 412 (774)
Q Consensus 333 ~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~i 412 (774)
.|+.-.|..++.+++...|...---..++++.+...+-...|-.++.+++......+-.++..+.+...+ ++++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l-~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL-KNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH-hhhHHHHHH
Confidence 4666666677777666555321112345555555555556666666666654433334444444433332 667777777
Q ss_pred HHHHHHHcCCCHHH
Q 004093 413 FEAGLKRFMHEPAY 426 (774)
Q Consensus 413 fe~al~~~p~~~~l 426 (774)
|..|+++.|++++.
T Consensus 699 ~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 699 FRQALKLTTKCPEC 712 (886)
T ss_pred HHHHHhcCCCChhh
Confidence 77777776666543
No 325
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=63.60 E-value=30 Score=36.68 Aligned_cols=62 Identities=23% Similarity=0.187 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 348 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~ 348 (774)
.+...+++.+...++++.+...+++.+...|.+..+|..+...+...|+...|+..|+++-+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 44455556666666666666666666666666666666666666666666666666655443
No 326
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=63.60 E-value=29 Score=32.58 Aligned_cols=64 Identities=22% Similarity=0.154 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH-HcCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 392 YVAYALMAFCQDKDPKLAHNVFEAGLK-RFMHEPAYILEY-ADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 392 ~i~~A~lE~~~~gd~~~A~~ife~al~-~~p~~~~l~~~y-a~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
-++|+.+-.....|..+.+.++|..++ ..|+.-.-.+.| +--+.++++|+.++.+.+..|+.-|
T Consensus 37 ~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 37 NLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred HHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 334444433333566777888888886 344433222222 2235567788888888777777655
No 327
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=63.60 E-value=3.2e+02 Score=32.59 Aligned_cols=429 Identities=15% Similarity=0.138 Sum_probs=215.9
Q ss_pred hhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHccC--CCHHHHHHHHHHHHH-HhhccCCc
Q 004093 38 VAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYM-AVNNDDATKQLFSRCLLIC--LQVPLWRCYIRFIRK-VYEKKGTE 113 (774)
Q Consensus 38 i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~-~~~n~~~a~~ifeRaL~~~--p~~~lW~~Yl~~~~~-~~~~~~~~ 113 (774)
|.-|..+++.+++.++-.+.....+-..|+.+.. ...|++.|+..++|++..+ ++..=.+..+.++.- ... ..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~---~~ 113 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYF---KT 113 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH---hc
Confidence 4667889999997666664445667788888876 5689999999999998876 333222333333321 100 11
Q ss_pred cHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccC-ccHHHHHHHHHHHHHH
Q 004093 114 GQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPT-HHVEQLWKDYENFENS 192 (774)
Q Consensus 114 ~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~-~~~e~l~~~y~~fE~~ 192 (774)
+...+.+..+++++.... .....|.-.++|++-.. ....++...|...++.....+. .+...++.-+.-.+..
T Consensus 114 ~~~~a~~~l~~~I~~~~~--~~~~~w~~~frll~~~l----~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~ 187 (608)
T PF10345_consen 114 NPKAALKNLDKAIEDSET--YGHSAWYYAFRLLKIQL----ALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEAL 187 (608)
T ss_pred CHHHHHHHHHHHHHHHhc--cCchhHHHHHHHHHHHH----HHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Confidence 123377777777766543 23467888888874311 0011345556666666665432 1111111111001000
Q ss_pred --------------hhHHH--HHHH----------------HHH-----HHHHHHHHHHHHHHHHHHHHHhhhcc-----
Q 004093 193 --------------VSRQL--AKGL----------------LSE-----YQSKYTSARAVYRERKKYCEEIDWNM----- 230 (774)
Q Consensus 193 --------------~~~~l--ak~~----------------l~e-----~~~~y~~Ar~i~k~~~~~~~~L~~~~----- 230 (774)
+++.. ++.+ +-+ ..+++..++...++...+.+......
T Consensus 188 l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~ 267 (608)
T PF10345_consen 188 LHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSW 267 (608)
T ss_pred HHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCc
Confidence 01110 0100 011 12344566666677666666654321
Q ss_pred -----CCCC------------CCCCchhHHHHHHH---HHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCC------
Q 004093 231 -----LAVP------------PTGSYKEEQQWIAW---KRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYH------ 284 (774)
Q Consensus 231 -----~~~p------------P~~~~~~~~q~~lW---~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~------ 284 (774)
+.++ .........++.+- ..++...-. ....++..++++|++..-.
T Consensus 268 ~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~--------~~~~ks~k~~~k~l~~i~~~~~~~~ 339 (608)
T PF10345_consen 268 DEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYK--------GSMDKSEKFLEKALKQIEKLKIKSP 339 (608)
T ss_pred CCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhc--------cCchHHHHHHHHHHHHHHHhhccCC
Confidence 1110 01111111111111 111111111 1122556677777763211
Q ss_pred -----------CHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhC---CC------CHHHHHHHHHHHHHhCC
Q 004093 285 -----------YPDIWYDYATWNA---------KSGSIDAAIKVFQRALKAL---PD------SEMLRYAFAELEESRGA 335 (774)
Q Consensus 285 -----------~~~iW~~ya~~l~---------~~g~~e~A~~v~erAl~~~---P~------~~~l~~~~a~l~e~~g~ 335 (774)
....|+.+..++. -.+++..|.+..+.+...+ |. ...+++..|.+....|+
T Consensus 340 ~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~ 419 (608)
T PF10345_consen 340 SAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGD 419 (608)
T ss_pred CCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCC
Confidence 1145655544443 2578888888888777653 32 25667788888888899
Q ss_pred HHHHHHHHH--------HHhcCCCCCcHHHH----HHHHHHHHHhc--CHHH--HHHHHHHHhcCCCCC----HHHHHHH
Q 004093 336 IAAAKKLYE--------SLLTDSVNTTALAH----IQFIRFLRRTE--GVEA--ARKYFLDARKSPNFT----YHVYVAY 395 (774)
Q Consensus 336 ~e~A~~iye--------k~l~~~~~~~~~~~----~~~a~~~~r~~--~~~~--Ar~if~~al~~~~~~----~~~~i~~ 395 (774)
.+.|...|. .+....+. ..+| +.++-+....+ +... +.+++++.-...... ..++...
T Consensus 420 l~~A~~~y~~~~~~~~~~~~~~~~~--~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~ 497 (608)
T PF10345_consen 420 LEAALYQYQKPRFLLCEAANRKSKF--RELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCL 497 (608)
T ss_pred HHHHHHHHhhhHHhhhhhhccCCcc--hHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHH
Confidence 999999998 44444433 2322 22333333322 2223 677777654422111 1111111
Q ss_pred HHHHHhc--CCCHHHHHHHHHHHHHHc-C--CC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--chhHHHHHHH
Q 004093 396 ALMAFCQ--DKDPKLAHNVFEAGLKRF-M--HE---PAYILEYADFLSRLNDDRNIRALFERALSSLP--PEESIEVWKR 465 (774)
Q Consensus 396 A~lE~~~--~gd~~~A~~ife~al~~~-p--~~---~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p--~e~~~~lw~~ 465 (774)
...-+.. .-....++..+..+++.. . ++ ..+.+.|+.+-.-.|+..+......++...-. ++....+|..
T Consensus 498 ~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~ 577 (608)
T PF10345_consen 498 VLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHL 577 (608)
T ss_pred HHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 1111111 123346777777777754 1 12 23344555444446888777777777665322 2346788933
Q ss_pred H-----HH-HHHHhCCHHHHHHHHHHH
Q 004093 466 F-----TQ-FEQMYGDLDSTLKVEQRR 486 (774)
Q Consensus 466 ~-----~~-fE~~~Gd~~~i~kv~~R~ 486 (774)
. .+ +| ..|+.+.+.......
T Consensus 578 v~~~~l~~~~~-~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 578 VASGMLADSYE-VQGDRDKAEEARQQL 603 (608)
T ss_pred HHHHHHHHHHH-HcCcHHHHHHHHHHH
Confidence 2 22 33 578887777665544
No 328
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.37 E-value=52 Score=36.49 Aligned_cols=126 Identities=12% Similarity=0.130 Sum_probs=90.0
Q ss_pred CCCCCHHHHHHHHHHhccC---ChhhHHHHHHHHHHhCCCCCcccHHHHHH--HH-HHHHHcCC-HHHHHHHHHHHHccC
Q 004093 18 ADKYNVETAEILANSALHL---PVAQAAPIYEQLLSVFPTAVSFIAKFWKQ--YV-EAYMAVNN-DDATKQLFSRCLLIC 90 (774)
Q Consensus 18 ~nP~d~~~W~~l~~~~~~~---~i~~Ar~~yeral~~~P~~~~~~~~~W~~--y~-~~e~~~~n-~~~a~~ifeRaL~~~ 90 (774)
.||.++.+|....-.+++. +++.=..+.+++|+.+|.+ ...|.. |+ ++-.+.++ -.+-.++..+++...
T Consensus 104 ~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RN----fh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~n 179 (421)
T KOG0529|consen 104 VNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRN----FHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDN 179 (421)
T ss_pred hCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCccc----ccchHHHHHHHHHHhcccccchhHHHHHHHHHhcc
Confidence 8999999999887777654 4788899999999999999 888852 22 22222333 345566777777765
Q ss_pred -CCHHHHHHHHHHHHHHhhcc--C-CccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhh
Q 004093 91 -LQVPLWRCYIRFIRKVYEKK--G-TEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKS 148 (774)
Q Consensus 91 -p~~~lW~~Yl~~~~~~~~~~--~-~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~ 148 (774)
.+...|..-.-++....... | .=..+.+++-+++.+.++=.||...+.|.- ..|+..
T Consensus 180 fSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY-~rWLl~ 240 (421)
T KOG0529|consen 180 FSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY-HRWLLG 240 (421)
T ss_pred chhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee-hHHhhc
Confidence 46799987777766533221 1 113678888899999998889999999975 555543
No 329
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=63.12 E-value=18 Score=26.51 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 004093 274 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAA 305 (774)
Q Consensus 274 ~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A 305 (774)
.|.+++...|.....|+-||.|+.++|+...|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 46677777787778888888888877776543
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=61.71 E-value=19 Score=25.20 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004093 288 IWYDYATWNAKSGSIDAAIKVFQRALKA 315 (774)
Q Consensus 288 iW~~ya~~l~~~g~~e~A~~v~erAl~~ 315 (774)
.+..++.++...|++++|..++++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4556677777777777777777777654
No 331
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=61.17 E-value=1.4e+02 Score=28.99 Aligned_cols=60 Identities=18% Similarity=0.092 Sum_probs=47.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 004093 293 ATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 293 a~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~ 352 (774)
+..=...++.+.+..++.-.--.-|+...+-+.-+.++..+|++.+|..+|+.+....+.
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~ 76 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG 76 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 333345567788888887777778999888888888889999999999999987776654
No 332
>PRK10941 hypothetical protein; Provisional
Probab=59.28 E-value=75 Score=33.63 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHH
Q 004093 403 DKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVW 463 (774)
Q Consensus 403 ~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw 463 (774)
.++++.|.++.++.+...|+++.-|..-+-.+.++|....|+.=++..++.+|.+-...+.
T Consensus 194 ~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 194 EKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 4899999999999999999999989888888999999999999999999999854434433
No 333
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.13 E-value=69 Score=33.53 Aligned_cols=127 Identities=16% Similarity=0.193 Sum_probs=78.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH----HHHHHHHHhCCHHHHHHHHHHHhcCCCC-----------CcH
Q 004093 293 ATWNAKSGSIDAAIKVFQRALKAL--PDSEMLRY----AFAELEESRGAIAAAKKLYESLLTDSVN-----------TTA 355 (774)
Q Consensus 293 a~~l~~~g~~e~A~~v~erAl~~~--P~~~~l~~----~~a~l~e~~g~~e~A~~iyek~l~~~~~-----------~~~ 355 (774)
..|...+.+.+-..+.|+..+... .++..||| .++.++..++.+.+..+++..+-..+.. ...
T Consensus 112 lDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLL 191 (440)
T KOG1464|consen 112 LDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLL 191 (440)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhh
Confidence 334445566777788888887754 35667886 5778888888887777777665543221 112
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHH------HHHHHhcCCCHHHHHHHHHHHHHHc
Q 004093 356 LAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAY------ALMAFCQDKDPKLAHNVFEAGLKRF 420 (774)
Q Consensus 356 ~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~------A~lE~~~~gd~~~A~~ife~al~~~ 420 (774)
.+|-.=++++..+.+-++...+|++++......+|-.+-- +.|..+ .|.+++|..=|=.|++.+
T Consensus 192 EiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlr-eg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 192 EIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLR-EGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccc-cchHHHHHhHHHHHHhcc
Confidence 3555556788888999999999999986543333333321 112122 255666666555566654
No 334
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=58.10 E-value=32 Score=36.45 Aligned_cols=59 Identities=27% Similarity=0.205 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 288 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 288 iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
+....+.++...|.+.+|.++.++++..+|-+...|..+...+...|+--.+.+-|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33455777788888888888888888888888888888777777777755555555443
No 335
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=57.04 E-value=15 Score=23.87 Aligned_cols=27 Identities=7% Similarity=0.225 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004093 62 FWKQYVEAYMAVNNDDATKQLFSRCLL 88 (774)
Q Consensus 62 ~W~~y~~~e~~~~n~~~a~~ifeRaL~ 88 (774)
.|...++.+.+.|++++|.++|+++..
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 377888888899999999999988764
No 336
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.97 E-value=68 Score=36.38 Aligned_cols=137 Identities=9% Similarity=0.091 Sum_probs=87.1
Q ss_pred HHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhc--------CCCC-CHHHHHHHHHHH
Q 004093 329 LEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARK--------SPNF-TYHVYVAYALMA 399 (774)
Q Consensus 329 l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~--------~~~~-~~~~~i~~A~lE 399 (774)
++.+..+...+..--+-++....+ .+.....-.+++.-.|++.+|.+++...-- -|.+ ++-.|.+++-+.
T Consensus 215 ~llq~~~Lk~~krevK~vmn~a~~-s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh 293 (696)
T KOG2471|consen 215 FLLQTRNLKLAKREVKHVMNIAQD-SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIH 293 (696)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcCC-CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEe
Confidence 333434444444334444443333 234445556778888999999988775421 1111 234455555555
Q ss_pred HhcCCCHHHHHHHHHHHHHH------c---C---------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHH
Q 004093 400 FCQDKDPKLAHNVFEAGLKR------F---M---------HEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIE 461 (774)
Q Consensus 400 ~~~~gd~~~A~~ife~al~~------~---p---------~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~ 461 (774)
|.. +.+..+..+|.+++.. . | ..-++....+-.+.+.|++-.|.++|.++...+- ....
T Consensus 294 ~~~-~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh--~nPr 370 (696)
T KOG2471|consen 294 YQL-GCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH--RNPR 370 (696)
T ss_pred eeh-hhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh--cCcH
Confidence 554 7788888888888851 0 1 1235666777788899999999999999999765 4568
Q ss_pred HHHHHHHH
Q 004093 462 VWKRFTQF 469 (774)
Q Consensus 462 lw~~~~~f 469 (774)
+|.++.+-
T Consensus 371 lWLRlAEc 378 (696)
T KOG2471|consen 371 LWLRLAEC 378 (696)
T ss_pred HHHHHHHH
Confidence 99998653
No 337
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=56.45 E-value=3.3e+02 Score=30.48 Aligned_cols=193 Identities=16% Similarity=0.131 Sum_probs=105.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-C--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC-----CCCCcHHH
Q 004093 292 YATWNAKSGSIDAAIKVFQRALKALP-D--------SEMLRYAFAELEESRGAIAAAKKLYESLLTD-----SVNTTALA 357 (774)
Q Consensus 292 ya~~l~~~g~~e~A~~v~erAl~~~P-~--------~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~-----~~~~~~~~ 357 (774)
.+-|+..+.++.+|.++-...+...- . ...+|+.+...++..++....+..+...+.. +....+-+
T Consensus 132 v~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavL 211 (493)
T KOG2581|consen 132 VLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVL 211 (493)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHH
Confidence 34566666777777766666554311 1 1356888888888889888888887776643 22212233
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCC---CCCHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHH--H---
Q 004093 358 HIQFIRFLRRTEGVEAARKYFLDARKSP---NFTYHVYVAY-ALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYI--L--- 428 (774)
Q Consensus 358 ~~~~a~~~~r~~~~~~Ar~if~~al~~~---~~~~~~~i~~-A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~--~--- 428 (774)
-..+.+.+.-.+-++.|.++-.+..-.. +..|--|+-+ +.+ ...+.++..|.+.|-.++.+.|+...+- .
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrI-kaiqldYssA~~~~~qa~rkapq~~alGf~q~v~ 290 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRI-KAIQLDYSSALEYFLQALRKAPQHAALGFRQQVN 290 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhH-HHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHH
Confidence 3444555555667777777665544211 1112212211 111 1124688999999999999988754321 1
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 429 -EYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 429 -~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
..+-...-+|++-+ |.+|.+..- .++...|-...+.- +.||+.....+..+....|.
T Consensus 291 k~~ivv~ll~geiPe-rs~F~Qp~~----~ksL~~Yf~Lt~AV-r~gdlkkF~~~leq~k~~f~ 348 (493)
T KOG2581|consen 291 KLMIVVELLLGEIPE-RSVFRQPGM----RKSLRPYFKLTQAV-RLGDLKKFNETLEQFKDKFQ 348 (493)
T ss_pred HHHHHHHHHcCCCcc-hhhhcCccH----HHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHh
Confidence 11111222354332 223332211 12222332222222 57899888888888888876
No 338
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.97 E-value=3.6e+02 Score=30.86 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=38.3
Q ss_pred CChhhHHHHHHHHHHh---CCCCCcccHHHHH----HHHHHHHHcC-CHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 004093 36 LPVAQAAPIYEQLLSV---FPTAVSFIAKFWK----QYVEAYMAVN-NDDATKQLFSRCLLICLQVPLWRCYIRFIR 104 (774)
Q Consensus 36 ~~i~~Ar~~yeral~~---~P~~~~~~~~~W~----~y~~~e~~~~-n~~~a~~ifeRaL~~~p~~~lW~~Yl~~~~ 104 (774)
++++.|++-+|++..+ .|+. ++.=. .+++++.... ++..++.+..++++...++..|.+-+.|-.
T Consensus 61 ~N~elAksHLekA~~i~~~ip~f----ydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQL 133 (629)
T KOG2300|consen 61 KNVELAKSHLEKAWLISKSIPSF----YDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQL 133 (629)
T ss_pred ccHHHHHHHHHHHHHHHcccccH----HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 4677777777776654 3333 22222 2333344433 677777777777777666667776665544
No 339
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=55.41 E-value=39 Score=23.89 Aligned_cols=31 Identities=26% Similarity=0.193 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCC
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQ--RALKALP 317 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~e--rAl~~~P 317 (774)
+.|+.+|-.+..+|++++|+++|+ -+....+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 556777777777777777777733 5554444
No 340
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.29 E-value=5.2e+02 Score=32.48 Aligned_cols=75 Identities=13% Similarity=0.196 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC--CCCcHHHHHHH
Q 004093 284 HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS--VNTTALAHIQF 361 (774)
Q Consensus 284 ~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~--~~~~~~~~~~~ 361 (774)
+.+.+|.++|....+.|...+|++-|-+| +++.-+..-.+.-++.|++++....+.-+-+.. |...+.+-+.|
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAY 1176 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHH
Confidence 57899999999999999998898888775 233334455566667777777776665554432 21123444555
Q ss_pred HH
Q 004093 362 IR 363 (774)
Q Consensus 362 a~ 363 (774)
++
T Consensus 1177 Ak 1178 (1666)
T KOG0985|consen 1177 AK 1178 (1666)
T ss_pred HH
Confidence 54
No 341
>PF12854 PPR_1: PPR repeat
Probab=54.86 E-value=20 Score=24.77 Aligned_cols=27 Identities=15% Similarity=0.328 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004093 60 AKFWKQYVEAYMAVNNDDATKQLFSRC 86 (774)
Q Consensus 60 ~~~W~~y~~~e~~~~n~~~a~~ifeRa 86 (774)
.-.|..++..+.+.|++++|.++|+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 356777777778888888888877763
No 342
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=54.10 E-value=24 Score=24.66 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004093 426 YILEYADFLSRLNDDRNIRALFERALS 452 (774)
Q Consensus 426 l~~~ya~~l~~~gd~~~Ar~lfEraL~ 452 (774)
.+...+.++..+|++++|..++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 345677788888889999999888886
No 343
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=53.55 E-value=91 Score=33.98 Aligned_cols=50 Identities=20% Similarity=0.376 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 004093 302 IDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSV 351 (774)
Q Consensus 302 ~e~A~~v~erAl~~~P~~---~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~ 351 (774)
.++.+.++...|...|.. ..+|+=+|.++...|.++.+..+|++|+....
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agA 171 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGA 171 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Confidence 456677777777777744 34566666777767777777777777766543
No 344
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=53.12 E-value=2.3e+02 Score=32.28 Aligned_cols=122 Identities=14% Similarity=-0.122 Sum_probs=63.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHH
Q 004093 298 KSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKY 377 (774)
Q Consensus 298 ~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~i 377 (774)
..|++-.|.+-+..+++..|..+.+-..++.+.+.+|.++.+......+=+.-.. ........++-....++++.|...
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s-~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGT-TDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcC-CchHHHHHHHhhhchhhHHHHHHH
Confidence 3466666766677777777777777667777777777777766554332221111 122333344444445666666665
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 004093 378 FLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM 421 (774)
Q Consensus 378 f~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p 421 (774)
-.-.+.+.-.+.++.--.|.-... .|-++++...+++.+...|
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~-l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADA-LQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHhccccCChhheeeecccHHH-HhHHHHHHHHHHHHhccCC
Confidence 555554332222222211111111 1445556666666655544
No 345
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=52.16 E-value=1e+02 Score=34.38 Aligned_cols=93 Identities=14% Similarity=0.070 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-H----hCCHHHHHHHHH
Q 004093 272 IFTYEQCLMYLYHYPDIWYDYATWNAKSG--SIDAAIKVFQRALKALPDSEMLRYAFAELEE-S----RGAIAAAKKLYE 344 (774)
Q Consensus 272 ~~~yeraL~~~p~~~~iW~~ya~~l~~~g--~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e-~----~g~~e~A~~iye 344 (774)
..+.+.||+.+|+...+|..-...+.+++ ++..-.++.+++++.+|.|...|. |-.+.. . .....+-.++-.
T Consensus 95 L~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~-YRRfV~~~~~~~~~~~~~El~ftt 173 (421)
T KOG0529|consen 95 LKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWH-YRRFVVEQAERSRNLEKEELEFTT 173 (421)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchH-HHHHHHHHHhcccccchhHHHHHH
Confidence 46778999999999999999998888876 367789999999999999987773 222221 1 111233345667
Q ss_pred HHhcCCCCCcHHHHHHHHHHHH
Q 004093 345 SLLTDSVNTTALAHIQFIRFLR 366 (774)
Q Consensus 345 k~l~~~~~~~~~~~~~~a~~~~ 366 (774)
++|..+.+ +=.+|.....+..
T Consensus 174 ~~I~~nfS-NYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 174 KLINDNFS-NYSAWHYRSLLLS 194 (421)
T ss_pred HHHhccch-hhhHHHHHHHHHH
Confidence 77776554 2346666555544
No 346
>PF12854 PPR_1: PPR repeat
Probab=52.06 E-value=20 Score=24.74 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=24.0
Q ss_pred CCHHHHHHHHH-HhccCChhhHHHHHHHH
Q 004093 21 YNVETAEILAN-SALHLPVAQAAPIYEQL 48 (774)
Q Consensus 21 ~d~~~W~~l~~-~~~~~~i~~Ar~~yera 48 (774)
-|+-.|..++. .++.+.+++|+.+|+++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 46788998888 78899999999999874
No 347
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=52.03 E-value=2.2e+02 Score=32.38 Aligned_cols=120 Identities=11% Similarity=-0.017 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 004093 273 FTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP-DSEMLRYAFAELEESRGAIAAAKKLYESLLTDSV 351 (774)
Q Consensus 273 ~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P-~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~ 351 (774)
.-...+|...|..|+.-...+......|+++.+.+.+.-+-+... .+..+...+-. ...++..+.|.+.-+-++...-
T Consensus 310 ~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~-~~~l~r~~~a~s~a~~~l~~ei 388 (831)
T PRK15180 310 QQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRS-LHGLARWREALSTAEMMLSNEI 388 (831)
T ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHh-hhchhhHHHHHHHHHHHhcccc
Confidence 345567778899999999999999999999999888876655433 34444333222 2355777888888777776554
Q ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHH
Q 004093 352 NTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA 394 (774)
Q Consensus 352 ~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~ 394 (774)
.+ ..+..--+--.+..+-++++...+++.+...+..-..|++
T Consensus 389 e~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 389 ED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred CC-hhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence 32 2332222333444566788888888877654433333333
No 348
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=50.99 E-value=21 Score=22.92 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 004093 288 IWYDYATWNAKSGSIDAAIKVFQ 310 (774)
Q Consensus 288 iW~~ya~~l~~~g~~e~A~~v~e 310 (774)
..+.++..+...|+.++|+.+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34455666666666666666554
No 349
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=50.87 E-value=5.6e+02 Score=31.56 Aligned_cols=216 Identities=15% Similarity=0.037 Sum_probs=128.8
Q ss_pred HHHHHHHHhcC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHH----HHHHHHHHHHHhCCHHH
Q 004093 273 FTYEQCLMYLY-----HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPD-----SEM----LRYAFAELEESRGAIAA 338 (774)
Q Consensus 273 ~~yeraL~~~p-----~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~-----~~~----l~~~~a~l~e~~g~~e~ 338 (774)
....++++..| .+|.+-+.++-.+....++++|..+..++-...+. ... +.-..+.+....++++.
T Consensus 397 sll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~ 476 (894)
T COG2909 397 SLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEE 476 (894)
T ss_pred HHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHH
Confidence 55666777666 47788888888888889999999999988876554 111 22234566667899999
Q ss_pred HHHHHHHHhcCCCCC----cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC----CCCCHHHHHHHHH--HHHhcCCCHHH
Q 004093 339 AKKLYESLLTDSVNT----TALAHIQFIRFLRRTEGVEAARKYFLDARKS----PNFTYHVYVAYAL--MAFCQDKDPKL 408 (774)
Q Consensus 339 A~~iyek~l~~~~~~----~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~----~~~~~~~~i~~A~--lE~~~~gd~~~ 408 (774)
|.++-+.++..-+.. ...+....+....-.|++++|+.+.+++.+. ......+|...-. +... +|..
T Consensus 477 a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~-qGq~-- 553 (894)
T COG2909 477 AEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA-QGQV-- 553 (894)
T ss_pred HHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH-hhHH--
Confidence 999998888765532 1234555666666689999999998887764 2223444544322 2112 3522
Q ss_pred HHHHHHHHHH--------HcCCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHhCC
Q 004093 409 AHNVFEAGLK--------RFMHEPAYILEYADFLS----RLNDDRNIRALFERALSSLPPE-ESIEVWKRFTQFEQMYGD 475 (774)
Q Consensus 409 A~~ife~al~--------~~p~~~~l~~~ya~~l~----~~gd~~~Ar~lfEraL~~~p~e-~~~~lw~~~~~fE~~~Gd 475 (774)
++..-+.+.. ..+-..-.+..+++.+. ..+...++|.-++-.....+.. .........+..+...||
T Consensus 554 ~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gd 633 (894)
T COG2909 554 ARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGD 633 (894)
T ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCC
Confidence 2222222221 11211112233333332 2345567777777666655521 122222345666777899
Q ss_pred HHHHHHHHHHHHHHcc
Q 004093 476 LDSTLKVEQRRKEALS 491 (774)
Q Consensus 476 ~~~i~kv~~R~~~~~p 491 (774)
++.+.....++.....
T Consensus 634 l~~A~~~l~~~~~l~~ 649 (894)
T COG2909 634 LDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9888877777666664
No 350
>PF13041 PPR_2: PPR repeat family
Probab=50.53 E-value=62 Score=24.07 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 004093 356 LAHIQFIRFLRRTEGVEAARKYFLDARKS 384 (774)
Q Consensus 356 ~~~~~~a~~~~r~~~~~~Ar~if~~al~~ 384 (774)
..|..++..+.+.|++++|.++|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 34555555555566666666666655543
No 351
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=49.65 E-value=3.7e+02 Score=29.14 Aligned_cols=103 Identities=20% Similarity=0.124 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 004093 269 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 348 (774)
Q Consensus 269 ~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~ 348 (774)
+|+ ..-..+|.++|.-...+..+++ ++.--+.+|.++|++|++....+. .-..-....+ ..++...+
T Consensus 202 ~RI-~~A~~ALeIN~eCA~AyvLLAE--EEa~Ti~~AE~l~k~ALka~e~~y----r~sqq~qh~~------~~~da~~r 268 (556)
T KOG3807|consen 202 ARI-KAAYQALEINNECATAYVLLAE--EEATTIVDAERLFKQALKAGETIY----RQSQQCQHQS------PQHEAQLR 268 (556)
T ss_pred HHH-HHHHHHHhcCchhhhHHHhhhh--hhhhhHHHHHHHHHHHHHHHHHHH----hhHHHHhhhc------cchhhhhh
Confidence 444 4456899999988888887764 334457789999999997632211 0000000111 11222222
Q ss_pred CCCCCcHHHHH--HHHHHHHHhcCHHHHHHHHHHHhcCCC
Q 004093 349 DSVNTTALAHI--QFIRFLRRTEGVEAARKYFLDARKSPN 386 (774)
Q Consensus 349 ~~~~~~~~~~~--~~a~~~~r~~~~~~Ar~if~~al~~~~ 386 (774)
.+- +..+|+ .++-..+++|+..+|.+.|....+.-+
T Consensus 269 RDt--nvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 269 RDT--NVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred ccc--chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 222 234443 445566777888888888877766543
No 352
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.85 E-value=86 Score=27.13 Aligned_cols=64 Identities=8% Similarity=-0.042 Sum_probs=44.0
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004093 27 EILANSALHLPVAQAAPIYEQLLSVFPTAVS-----FIAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC 90 (774)
Q Consensus 27 ~~l~~~~~~~~i~~Ar~~yeral~~~P~~~~-----~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~ 90 (774)
+.+.+..+.+++..|...+.+.+........ .....+...+.+....|++++|...++.++..-
T Consensus 3 l~~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 3 LRYLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4567777888888887766666655443311 012345566777778899999999999998763
No 353
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=48.42 E-value=39 Score=24.86 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Q 004093 307 KVFQRALKALPDSEMLRYAFAELEESRGAIAAA 339 (774)
Q Consensus 307 ~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A 339 (774)
..|.+||...|.+...++.||+++..+|+.+++
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 357788999999999999999999999886544
No 354
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=47.90 E-value=2.3e+02 Score=26.13 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=24.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 004093 297 AKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESR 333 (774)
Q Consensus 297 ~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~ 333 (774)
...+........++..+...+.+..++..++.++...
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 3445666777777777776666667777777766554
No 355
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.87 E-value=6.8e+02 Score=31.60 Aligned_cols=76 Identities=12% Similarity=0.020 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004093 404 KDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVE 483 (774)
Q Consensus 404 gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~ 483 (774)
++.++|.+.-++. +.+.+|...+...+..+...+|..-|-+|= ...-+..-++.-...|.++.+.+++
T Consensus 1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyikad-------Dps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKAD-------DPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhcC-------CcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4555554443332 456667666666666666666665555541 1223444445555566666666665
Q ss_pred HHHHHHcc
Q 004093 484 QRRKEALS 491 (774)
Q Consensus 484 ~R~~~~~p 491 (774)
.-+.+...
T Consensus 1157 ~MaRkk~~ 1164 (1666)
T KOG0985|consen 1157 LMARKKVR 1164 (1666)
T ss_pred HHHHHhhc
Confidence 55555544
No 356
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=47.70 E-value=1e+02 Score=35.29 Aligned_cols=84 Identities=21% Similarity=0.141 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHH
Q 004093 302 IDAAIKVFQRALKALPDSEMLRYAFAELEESR---GAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYF 378 (774)
Q Consensus 302 ~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~---g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if 378 (774)
...|+..|.+++...|....++..+|.++.++ |+.-.|..---.++..++. .-.+|..+++++...+.+.+|.+..
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s-~~kah~~la~aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS-IQKAHFRLARALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH-HHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 45678888889988898888888888877775 3433344334456666665 3468888888888888888888866
Q ss_pred HHHhcCCC
Q 004093 379 LDARKSPN 386 (774)
Q Consensus 379 ~~al~~~~ 386 (774)
..+....+
T Consensus 469 ~alq~~~P 476 (758)
T KOG1310|consen 469 WALQMSFP 476 (758)
T ss_pred HHHhhcCc
Confidence 66555544
No 357
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=47.41 E-value=3.7e+02 Score=28.38 Aligned_cols=214 Identities=15% Similarity=0.132 Sum_probs=120.6
Q ss_pred hHHHHHHHHHHHHhc-CCC-------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC----------CHHHH----H
Q 004093 268 NKRIIFTYEQCLMYL-YHY-------PDIWYDYATWNAKSG-SIDAAIKVFQRALKALPD----------SEMLR----Y 324 (774)
Q Consensus 268 ~~r~~~~yeraL~~~-p~~-------~~iW~~ya~~l~~~g-~~e~A~~v~erAl~~~P~----------~~~l~----~ 324 (774)
.+.+...|.||-... ... .++.|+.+.-+.+.+ +++.|...+++|...+.. -..+. .
T Consensus 9 ~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~ 88 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILR 88 (278)
T ss_pred HHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHH
Confidence 344555666665543 222 356667777777788 999999999999887421 11222 2
Q ss_pred HHHHHHHHhCC---HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC---CCHHHHHHHHHH
Q 004093 325 AFAELEESRGA---IAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN---FTYHVYVAYALM 398 (774)
Q Consensus 325 ~~a~l~e~~g~---~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~---~~~~~~i~~A~l 398 (774)
.++..+...+. .++|..+.+.+-...++ ...++...+++..+.++.+.+.+++.+++.... ..+...+.....
T Consensus 89 ~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~ 167 (278)
T PF08631_consen 89 LLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQ 167 (278)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 44555554444 34666676666666665 456776777777778889999999999998644 345555554433
Q ss_pred HHhcCCCHHHHHHHHHHHHH-HcCCCHH-HH----HHHHHHHHhcCC------hhHHHHHHHHHHhc----CCch----h
Q 004093 399 AFCQDKDPKLAHNVFEAGLK-RFMHEPA-YI----LEYADFLSRLND------DRNIRALFERALSS----LPPE----E 458 (774)
Q Consensus 399 E~~~~gd~~~A~~ife~al~-~~p~~~~-l~----~~ya~~l~~~gd------~~~Ar~lfEraL~~----~p~e----~ 458 (774)
... .+...|...+...+. ++....+ +. ...+-+....++ .+....++++.-.. +..+ -
T Consensus 168 l~~--~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~ 245 (278)
T PF08631_consen 168 LAE--KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAI 245 (278)
T ss_pred HHh--hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 222 344556666655554 3322222 21 122222222122 23333444432221 2211 2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 459 SIEVWKRFTQFEQMYGDLDSTLKVEQR 485 (774)
Q Consensus 459 ~~~lw~~~~~fE~~~Gd~~~i~kv~~R 485 (774)
...||+.-...+ +.++++.+.+-++-
T Consensus 246 ~~LLW~~~~~~~-~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 246 HTLLWNKGKKHY-KAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHH-hhcCHHHHHHHHHH
Confidence 367888766554 67788777765553
No 358
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=47.35 E-value=77 Score=33.69 Aligned_cols=78 Identities=19% Similarity=0.103 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004093 404 KDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVE 483 (774)
Q Consensus 404 gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~ 483 (774)
+..+.+..+|-.. +..-+.++...|.+++|..+-+|+++..| -+...|..+++.-...||--++.+-+
T Consensus 269 dererle~ly~kl----------lgkva~~yle~g~~neAi~l~qr~ltldp--L~e~~nk~lm~~la~~gD~is~~khy 336 (361)
T COG3947 269 DERERLEQLYMKL----------LGKVARAYLEAGKPNEAIQLHQRALTLDP--LSEQDNKGLMASLATLGDEISAIKHY 336 (361)
T ss_pred chHHHHHHHHHHH----------HHHHHHHHHHcCChHHHHHHHHHHhhcCh--hhhHHHHHHHHHHHHhccchhhhhHH
Confidence 3445555555433 33455667888999999999999999887 56788999999988999998999999
Q ss_pred HHHHHHcccc
Q 004093 484 QRRKEALSRT 493 (774)
Q Consensus 484 ~R~~~~~pk~ 493 (774)
.|+.+.+.++
T Consensus 337 erya~vleae 346 (361)
T COG3947 337 ERYAEVLEAE 346 (361)
T ss_pred HHHHHHHHHH
Confidence 9999888754
No 359
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=46.97 E-value=96 Score=29.40 Aligned_cols=84 Identities=19% Similarity=0.201 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004093 246 IAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYA 325 (774)
Q Consensus 246 ~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~ 325 (774)
.+|..|+-|-.+||..+.+.-..+. -++.+.... -.+--+..++-....|++.-|.++...++...|++......
T Consensus 35 aIy~~Y~GWfDgnP~~L~pl~p~~~----A~~~v~l~G-G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l 109 (141)
T PF14863_consen 35 AIYQGYLGWFDGNPANLNPLPPEEE----AKRYVELAG-GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQL 109 (141)
T ss_dssp HHHHHHC-S--S-GGGTS---HHHH----HHHHHHHTT-CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHcCCccCCCccccCCCChHHH----HHHHHHHcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 4788888888888877754222222 233333333 33555566666778999999999999999999999998888
Q ss_pred HHHHHHHhC
Q 004093 326 FAELEESRG 334 (774)
Q Consensus 326 ~a~l~e~~g 334 (774)
.++.++++|
T Consensus 110 ~A~al~~lg 118 (141)
T PF14863_consen 110 KADALEQLG 118 (141)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777654
No 360
>PF08911 NUP50: NUP50 (Nucleoporin 50 kDa); InterPro: IPR015007 This entry represents a domain found in Nup2, 50 and 61, which are components of the nuclear pore complex. Nucleoporin 50 kDa (NUP50) acts as a cofactor for the importin-alpha:importin-beta heterodimer, which in turn allows for transportation of many nuclear-targeted proteins through nuclear pore complexes. The C terminus of NUP50 binds importin-beta through RAN-GTP, the N terminus binds the C terminus of importin-alpha, while a central domain binds importin-beta. NUP50:importin-alpha:importin-beta then binds cargo and can stimulate nuclear import. The N-terminal domain of NUP50 is also able to actively displace nuclear localisation signals from importin-alpha []. NUP2 encodes a non-essential nuclear pore protein that has a central domain similar to those of Nsp1 and Nup1[, ]. Transport of macromolecules between the nucleus and the cytoplasm of eukaryotic cells occurs through the nuclear pore complex (NPC), a large macromolecular complex that spans the nuclear envelope [, , ]. The structure of the vertebrate NPC has been studied extensively; recent reviews include [, , , ]. The yeast NPC shares several features with the vertebrate NPC, despite being smaller and less elaborate [, ]. Many yeast nuclear pore proteins, or nucleoporins, have been identified by a variety of genetic approaches [, , , ]. nup2 mutants show genetic interactions with nsp1 and nup1 conditional alleles [, ]. Nup1 interacts with the nuclear import factor Srp1 [] and with the small GTPase Ran (encoded by GSP1) [].; GO: 0005643 nuclear pore; PDB: 3TJ3_D 1UN0_D 2C1T_D 2C1M_B.
Probab=46.54 E-value=5.6 Score=33.00 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=11.2
Q ss_pred cCCCchhHHHHHHHHhhhccCC-----CCCCCccccccccccc
Q 004093 732 SQPQPRDFFRIRQMKKARGAAS-----SQTGSASYGSAVSGDL 769 (774)
Q Consensus 732 ~~~~~~d~~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 769 (774)
-.-...||...|.++++|.... +.+.+.+-.++|+|--
T Consensus 26 f~~AS~evL~~RkI~k~krr~~~~~~~~~~~~~~~~~~F~g~~ 68 (72)
T PF08911_consen 26 FKRASEEVLAKRKIKKPKRRRAAGASSSASSSSSAFSGFAGFK 68 (72)
T ss_dssp --B--HHHHHCS-S-SB--TTT---------------------
T ss_pred cccCCHHHhhcceeccccccccccccCCCCCcCcccCCCcCCC
Confidence 3345689999999999995432 2333345556666643
No 361
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.38 E-value=2.1e+02 Score=33.57 Aligned_cols=133 Identities=17% Similarity=0.158 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 366 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~ 366 (774)
+..-..+.|++++|-.++| +..+++... .| ++..+.|+++.|.++-.++ + ...-|.++++...
T Consensus 615 ~~rt~va~Fle~~g~~e~A-------L~~s~D~d~-rF---elal~lgrl~iA~~la~e~---~---s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQA-------LELSTDPDQ-RF---ELALKLGRLDIAFDLAVEA---N---SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhhHHhHhhhccchHhh-------hhcCCChhh-hh---hhhhhcCcHHHHHHHHHhh---c---chHHHHHHHHHHh
Confidence 5667778888877765544 555554321 11 2334567777776654432 2 2467999999999
Q ss_pred HhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHH
Q 004093 367 RTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRAL 446 (774)
Q Consensus 367 r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~l 446 (774)
..+++..|.+.|.+|...... .+.+...|+.+--.++-..+-+.-.+|..|+ . +...|+++++..+
T Consensus 678 ~~~~l~lA~EC~~~a~d~~~L---------lLl~t~~g~~~~l~~la~~~~~~g~~N~AF~-~----~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 678 SAGELPLASECFLRARDLGSL---------LLLYTSSGNAEGLAVLASLAKKQGKNNLAFL-A----YFLSGDYEECLEL 743 (794)
T ss_pred hcccchhHHHHHHhhcchhhh---------hhhhhhcCChhHHHHHHHHHHhhcccchHHH-H----HHHcCCHHHHHHH
Confidence 999999999999998765332 1223334655433333233322233444443 2 2346888888777
Q ss_pred HHHH
Q 004093 447 FERA 450 (774)
Q Consensus 447 fEra 450 (774)
+.+.
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 7664
No 362
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=45.94 E-value=6.1e+02 Score=30.49 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=30.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004093 275 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQR 311 (774)
Q Consensus 275 yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~er 311 (774)
+|.+....|.+..+.-..++.+.+.|.-++|.+.|-|
T Consensus 841 LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 841 LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 5666677888888888999999999988888877755
No 363
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=45.82 E-value=28 Score=22.51 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhc
Q 004093 358 HIQFIRFLRRTEGVEAARKYFLDARK 383 (774)
Q Consensus 358 ~~~~a~~~~r~~~~~~Ar~if~~al~ 383 (774)
|..+++.+.+.+++++|.++|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44555556666666666666665543
No 364
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=43.53 E-value=42 Score=22.10 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004093 62 FWKQYVEAYMAVNNDDATKQLFSRCLLI 89 (774)
Q Consensus 62 ~W~~y~~~e~~~~n~~~a~~ifeRaL~~ 89 (774)
.|...+..+.+.|++++|.++|.++...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3778888888999999999999987654
No 365
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=43.52 E-value=2.5e+02 Score=25.42 Aligned_cols=105 Identities=16% Similarity=0.082 Sum_probs=58.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHH
Q 004093 293 ATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVE 372 (774)
Q Consensus 293 a~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~ 372 (774)
|.-+...||.-+|+++.+..+...+++...| .++..+|.+ .++.+..... +.+-..|. -
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~----~lh~~QG~i-----f~~lA~~ten---~d~k~~yL---------l 61 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSW----LLHRLQGTI-----FYKLAKKTEN---PDVKFRYL---------L 61 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchH----HHHHHHhHH-----HHHHHHhccC---chHHHHHH---------H
Confidence 3446678999999999999999988877655 223334431 1222222221 12222222 2
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 004093 373 AARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR 419 (774)
Q Consensus 373 ~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~ 419 (774)
.+.+.|.++....+......+..|.-.-. ...++++.+.-+++|..
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s-~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGS-VKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhcc
Confidence 45556666666554445555555553211 24566777777777653
No 366
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=43.35 E-value=3e+02 Score=30.66 Aligned_cols=69 Identities=20% Similarity=0.224 Sum_probs=51.5
Q ss_pred cCCCCCH---HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCcccHH--HHHHHHHHHHHc--CCHHHHHHHHHHHHcc
Q 004093 17 VADKYNV---ETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAK--FWKQYVEAYMAV--NNDDATKQLFSRCLLI 89 (774)
Q Consensus 17 ~~nP~d~---~~W~~l~~~~~~~~i~~Ar~~yeral~~~P~~~~~~~~--~W~~y~~~e~~~--~n~~~a~~ifeRaL~~ 89 (774)
+.||+.+ ..|....+.+...++..|..+|+.++...|.. .. .+..+.+.+... -++.+|.+.|++++..
T Consensus 123 ~~~p~~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~----~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 123 LENPYEVFGDREWRRAKELFNRYDYGAAARILEELLRRLPGR----EEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch----hhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4688766 56677777777789999999999999876665 44 455555555544 4778999999998875
No 367
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=43.14 E-value=3.9e+02 Score=27.48 Aligned_cols=59 Identities=20% Similarity=0.047 Sum_probs=50.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 004093 294 TWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 294 ~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~ 352 (774)
+-+.+.+..++|+...+.-++..|.+......|.+++.-.|++++|..-++-+-...+.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 34567778899999999999999999888888888999999999999888888887775
No 368
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=42.58 E-value=60 Score=28.12 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=31.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 004093 297 AKSGSIDAAIKVFQRALKALPDS---------EMLRYAFAELEESRGAIAAAKKLYESLLT 348 (774)
Q Consensus 297 ~~~g~~e~A~~v~erAl~~~P~~---------~~l~~~~a~l~e~~g~~e~A~~iyek~l~ 348 (774)
.+.+++.+|.+.+.+.+.....+ ....+..+.+....|+.++|...++.+++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35678888877777776543321 11223455555566666666666666664
No 369
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=42.52 E-value=1.8e+02 Score=37.16 Aligned_cols=136 Identities=17% Similarity=0.127 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH-------hc-CCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----c-C
Q 004093 355 ALAHIQFIRFLRRTEGVEAARKYFLDA-------RK-SPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR----F-M 421 (774)
Q Consensus 355 ~~~~~~~a~~~~r~~~~~~Ar~if~~a-------l~-~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~----~-p 421 (774)
...+..++..+.+.++.+.|...-.+| +. +.+.+.+.|.+.+.+++.+ +....|.+.+.++++. + +
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~-~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAV-KNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhc-cCccchhhhHHHHHHhhccccCC
Confidence 455666666666666666666554433 22 2333466666666666665 5666666666666553 1 2
Q ss_pred CCHHH---HHHHHHHHHhcCChhHHHHHHHHHHhcCC----c--hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 422 HEPAY---ILEYADFLSRLNDDRNIRALFERALSSLP----P--EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 422 ~~~~l---~~~ya~~l~~~gd~~~Ar~lfEraL~~~p----~--e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
+.|.. ......++...++++.|..+.+.|+.... + -........+.+.-...|+...+...++-....++
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 22222 22333334455677777777777776311 0 01223333333333344455444444444444444
No 370
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=42.27 E-value=43 Score=24.90 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 004093 290 YDYATWNAKSGSIDAAIKVFQRALK 314 (774)
Q Consensus 290 ~~ya~~l~~~g~~e~A~~v~erAl~ 314 (774)
+++|..|...|+.+.|+++++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3556666666666666666666663
No 371
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.79 E-value=3.7e+02 Score=26.61 Aligned_cols=110 Identities=16% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 004093 288 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEML----RYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIR 363 (774)
Q Consensus 288 iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l----~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~ 363 (774)
..+..+.++.+.|+...|...|..+-...|--..+ .+.-+-++...|.|+......+-+..........+--.++.
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALgl 175 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGL 175 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhH
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004093 364 FLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALM 398 (774)
Q Consensus 364 ~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~l 398 (774)
...+.|++..|++.|.....+... +...-+-|++
T Consensus 176 Aa~kagd~a~A~~~F~qia~Da~a-prnirqRAq~ 209 (221)
T COG4649 176 AAYKAGDFAKAKSWFVQIANDAQA-PRNIRQRAQI 209 (221)
T ss_pred HHHhccchHHHHHHHHHHHccccC-cHHHHHHHHH
No 372
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=40.37 E-value=86 Score=24.28 Aligned_cols=26 Identities=12% Similarity=-0.063 Sum_probs=18.3
Q ss_pred HhcCCCHHHHHHHHHHHHHHcCCCHHH
Q 004093 400 FCQDKDPKLAHNVFEAGLKRFMHEPAY 426 (774)
Q Consensus 400 ~~~~gd~~~A~~ife~al~~~p~~~~l 426 (774)
+.. |++++|++..+.+|+..|++...
T Consensus 12 ykl-~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 12 YKL-GEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHT-T-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHh-hhHHHHHHHHHHHHhhCCCcHHH
Confidence 454 88888888888888888887654
No 373
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.37 E-value=4.7e+02 Score=28.48 Aligned_cols=98 Identities=12% Similarity=0.081 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCC-CCHHHH-HHHHHHHHH----hCCHHHHHHHHHHHhcCCCCCc
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALK----ALP-DSEMLR-YAFAELEES----RGAIAAAKKLYESLLTDSVNTT 354 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~----~~P-~~~~l~-~~~a~l~e~----~g~~e~A~~iyek~l~~~~~~~ 354 (774)
-.++|...++|+.+-||.+.|.+.+.+... ..- -+..++ +.++.++.. ...+++|..++++.-...-.+.
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 358999999999999998888766655544 222 122221 233444433 3567888888887655443323
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 004093 355 ALAHIQFIRFLRRTEGVEAARKYFLDARKS 384 (774)
Q Consensus 355 ~~~~~~~a~~~~r~~~~~~Ar~if~~al~~ 384 (774)
-.+|...-.+ ..-++++|-.+|-.++..
T Consensus 183 lKvY~Gly~m--svR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 183 LKVYQGLYCM--SVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHH--HHHhHHHHHHHHHHHccc
Confidence 3444433333 345788898998888753
No 374
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=40.02 E-value=9.2e+02 Score=30.89 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=23.2
Q ss_pred HHHHHHHhcCC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004093 274 TYEQCLMYLYH----YPDIWYDYATWNAKSGSIDAAIKVFQR 311 (774)
Q Consensus 274 ~yeraL~~~p~----~~~iW~~ya~~l~~~g~~e~A~~v~er 311 (774)
+|..+|..... .-.++..||..+.+...+++|.-.|++
T Consensus 923 Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~ 964 (1265)
T KOG1920|consen 923 LYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYER 964 (1265)
T ss_pred cchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 35566654432 235667777778777777777555544
No 375
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=39.56 E-value=3.5e+02 Score=25.95 Aligned_cols=55 Identities=18% Similarity=0.128 Sum_probs=46.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 004093 298 KSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 298 ~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~ 352 (774)
..++.+.+..++...--.-|+...+-+.-+-++..+|++++|..+|..+.+..+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 3778888888888877788999888888888999999999999999998876654
No 376
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.50 E-value=7.8e+02 Score=29.95 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=42.7
Q ss_pred ccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHH
Q 004093 34 LHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIR 101 (774)
Q Consensus 34 ~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~~~lW~~Yl~ 101 (774)
+.+.+++|..+-+.....-|.- ...++|..|++..+..+.+..|...+-+++.. +-..|.....
T Consensus 368 ~~k~yeeAl~~~k~~~~~~~~~--~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn--~~~eWe~~V~ 431 (846)
T KOG2066|consen 368 EKKKYEEALDAAKASIGNEERF--VIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN--NAAEWELWVF 431 (846)
T ss_pred HhhHHHHHHHHHHhccCCcccc--chHHHHHHHHHHHHhcchHHHHHhhhHHHhcc--hHHHHHHHHH
Confidence 3445777776655555555541 12689999999999999999988877766542 3455644443
No 377
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=39.46 E-value=1.8e+02 Score=28.82 Aligned_cols=47 Identities=26% Similarity=0.190 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004093 270 RIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP 317 (774)
Q Consensus 270 r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P 317 (774)
......++.+...| ++.++..++..+..+|+.++|+...+++....|
T Consensus 129 ~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33455666666666 678899999999999999999999999999999
No 378
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=39.46 E-value=5.5e+02 Score=28.12 Aligned_cols=51 Identities=29% Similarity=0.343 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 405 DPKLAHNVFEAGLKR--FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 405 d~~~A~~ife~al~~--~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
.+..+..+.+..... ....--++-.-++++.++|..++|+.-|++++..-.
T Consensus 344 Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~ 396 (415)
T COG4941 344 GPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALAR 396 (415)
T ss_pred hHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcC
Confidence 344455555554443 112223445566666666666667767776666433
No 379
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.30 E-value=3.9e+02 Score=31.44 Aligned_cols=117 Identities=17% Similarity=0.145 Sum_probs=74.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 004093 274 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT 353 (774)
Q Consensus 274 ~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~ 353 (774)
..++||...++. +-.+. +..+.|+++.|.++..++ ++..-|-+++++-.+.+++..|.++|.++.....
T Consensus 629 ~~e~AL~~s~D~-d~rFe---lal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~-- 697 (794)
T KOG0276|consen 629 MKEQALELSTDP-DQRFE---LALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLGS-- 697 (794)
T ss_pred chHhhhhcCCCh-hhhhh---hhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchhh--
Confidence 467888876654 43443 345778888888776554 5667799999999999999999999998765432
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 004093 354 TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFE 414 (774)
Q Consensus 354 ~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife 414 (774)
++.++...|+-+....+-..+.+.+.. -.+++.+ -..|+++.+.+++.
T Consensus 698 -------LlLl~t~~g~~~~l~~la~~~~~~g~~-N~AF~~~-----~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 698 -------LLLLYTSSGNAEGLAVLASLAKKQGKN-NLAFLAY-----FLSGDYEECLELLI 745 (794)
T ss_pred -------hhhhhhhcCChhHHHHHHHHHHhhccc-chHHHHH-----HHcCCHHHHHHHHH
Confidence 222333445544444444444444433 2333322 22588888776654
No 380
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=38.48 E-value=2.6e+02 Score=32.32 Aligned_cols=86 Identities=10% Similarity=-0.156 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh---cCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 004093 337 AAAKKLYESLLTDSVNTTALAHIQFIRFLRRT---EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVF 413 (774)
Q Consensus 337 e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~---~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~if 413 (774)
..+...|.+++...+. ...++..++..+.+. ++.-.|..-...|+...++...++..++.....+ +.+..|....
T Consensus 391 ~~~i~~~s~a~q~~~~-~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el-~r~~eal~~~ 468 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPD-AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNEL-TRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHhhhccc-hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHH-hhHHHhhhhH
Confidence 4566677788777765 345666666554432 3333344444556665555555555555544444 6788888887
Q ss_pred HHHHHHcCCCH
Q 004093 414 EAGLKRFMHEP 424 (774)
Q Consensus 414 e~al~~~p~~~ 424 (774)
..+...+|.+.
T Consensus 469 ~alq~~~Ptd~ 479 (758)
T KOG1310|consen 469 WALQMSFPTDV 479 (758)
T ss_pred HHHhhcCchhh
Confidence 77777888554
No 381
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=38.44 E-value=4.7e+02 Score=27.02 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004093 290 YDYATWNAKSGSIDAAIKVFQRALKALP 317 (774)
Q Consensus 290 ~~ya~~l~~~g~~e~A~~v~erAl~~~P 317 (774)
...|.+..+.++++++.....+.+...+
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~ 32 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNP 32 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence 3456777777888888888888887755
No 382
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=36.74 E-value=9.1e+02 Score=29.89 Aligned_cols=160 Identities=18% Similarity=0.083 Sum_probs=97.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHhcC---CCCCcHHHHHHHH--
Q 004093 293 ATWNAKSGSIDAAIKVFQRALKALPDSE-----MLRYAFAELEESRGAIAAAKKLYESLLTD---SVNTTALAHIQFI-- 362 (774)
Q Consensus 293 a~~l~~~g~~e~A~~v~erAl~~~P~~~-----~l~~~~a~l~e~~g~~e~A~~iyek~l~~---~~~~~~~~~~~~a-- 362 (774)
+.+....|++++|.++.+.++...|.+. ......+....-.|++++|+.+...+.+. ...-.-.+|..+.
T Consensus 465 a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s 544 (894)
T COG2909 465 AQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQS 544 (894)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 5555667899999999999999988663 23345566666789999999887666653 2221234665553
Q ss_pred HHHHHhcCHH--HHHHHHHHHhc-----CCCCCHHH--H--HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHH---
Q 004093 363 RFLRRTEGVE--AARKYFLDARK-----SPNFTYHV--Y--VAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL--- 428 (774)
Q Consensus 363 ~~~~r~~~~~--~Ar~if~~al~-----~~~~~~~~--~--i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~--- 428 (774)
.++..+|... ...+.|++... .+...+.+ + +.++.+ +..+...+|+.-++-+....+..-..+.
T Consensus 545 ~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~--r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~ 622 (894)
T COG2909 545 EILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWL--RLDLAEAEARLGIEVGSVYTPQPLLSRLALS 622 (894)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH--HHhhhhHHhhhcchhhhhcccchhHHHHHHH
Confidence 3555566222 22223333222 12211111 1 122222 2335666778888877776665544332
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC
Q 004093 429 EYADFLSRLNDDRNIRALFERALSSL 454 (774)
Q Consensus 429 ~ya~~l~~~gd~~~Ar~lfEraL~~~ 454 (774)
..+..+...||.++|....++.....
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 56777788899999999888877643
No 383
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=35.11 E-value=2.9e+02 Score=33.24 Aligned_cols=65 Identities=11% Similarity=0.120 Sum_probs=30.4
Q ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH---------hCCHHHHHHHHHHHhcCCCC
Q 004093 288 IWYDYATWNAK---SGSIDAAIKVFQRALKA-LPDSEMLRYAFAELEES---------RGAIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 288 iW~~ya~~l~~---~g~~e~A~~v~erAl~~-~P~~~~l~~~~a~l~e~---------~g~~e~A~~iyek~l~~~~~ 352 (774)
+-+.|+..+-+ -|+-++|+++.-.+++. .|...+++...+.+|.. .+..+.|.+.|.++.+..|.
T Consensus 242 v~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~ 319 (1226)
T KOG4279|consen 242 VRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL 319 (1226)
T ss_pred eEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch
Confidence 33444444433 23455566655555553 23334444443443322 12334555666666665554
No 384
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=34.82 E-value=75 Score=20.97 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004093 62 FWKQYVEAYMAVNNDDATKQLFSRCLL 88 (774)
Q Consensus 62 ~W~~y~~~e~~~~n~~~a~~ifeRaL~ 88 (774)
.|...+..+.+.|+++.|.++|+.+..
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577888888888999999988888765
No 385
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=34.59 E-value=1.2e+02 Score=31.46 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Q 004093 272 IFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA-LPDSEMLRYAFAELEE 331 (774)
Q Consensus 272 ~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~-~P~~~~l~~~~a~l~e 331 (774)
...|.+|+...|.++..|.++|.+....|+.-.|.-.|-|++.. .|- ....-.+..+..
T Consensus 2 ~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf-~~A~~NL~~lf~ 61 (278)
T PF10373_consen 2 ERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF-PSARENLQKLFE 61 (278)
T ss_dssp HHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB---HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc-HHHHHHHHHHHH
Confidence 46899999999999999999999999999888899999999853 343 333334444433
No 386
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=34.27 E-value=68 Score=21.02 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhc
Q 004093 358 HIQFIRFLRRTEGVEAARKYFLDARK 383 (774)
Q Consensus 358 ~~~~a~~~~r~~~~~~Ar~if~~al~ 383 (774)
|...+..+.+.+++++|.++|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555555666666666666666554
No 387
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=34.20 E-value=67 Score=23.87 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhc
Q 004093 360 QFIRFLRRTEGVEAARKYFLDARK 383 (774)
Q Consensus 360 ~~a~~~~r~~~~~~Ar~if~~al~ 383 (774)
.+++.+...|+.+.||.+++..+.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 344555555666666666665553
No 388
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=34.10 E-value=2.5e+02 Score=31.01 Aligned_cols=140 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCH-----HHHH
Q 004093 305 AIKVFQRALKALPDSEMLRYAFAELEESR----GAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGV-----EAAR 375 (774)
Q Consensus 305 A~~v~erAl~~~P~~~~l~~~~a~l~e~~----g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~-----~~Ar 375 (774)
..+++..+.+.+|+..++|..+..+..+. +..+..+...+.+.+........+=++-+...+.-++. ...|
T Consensus 108 ~~~ll~~arq~FpD~SDl~~aLreLl~r~kL~~~~~~~le~al~~Le~e~~~K~ikAGINvAL~Ak~Fs~~~~lsa~~LR 187 (372)
T PRK15338 108 LEEFLRQARKLFPDPSDLVLVLRELLRRKQLEEIVRKKLESLLKHVEEETDPKTLKAGINCALKARLFGKALSLKPGLLR 187 (372)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHhhcCcHHHHhcCcHHHHHHHHHhhcCCCHHHHH
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHH
Q 004093 376 KYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRAL 446 (774)
Q Consensus 376 ~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~l 446 (774)
.+|...+........+|..|.. +|.. .+.+.+.....++|....+...--..-..|-.-.++..++|.+
T Consensus 188 ~lYR~Fl~~d~~~~~iY~~Wie-eyg~-~~R~~il~Fl~~AL~~DlqS~~Ps~~~~EFG~l~~~l~~LR~L 256 (372)
T PRK15338 188 ASYRQFLQSESHEVEIYSDWIA-SYGY-QRRLVVLDFIEGSLLTDIDANDASCSRLEFGQLLRRLTQLKML 256 (372)
T ss_pred HHHHHHHhccCcHHHHHHHHHH-HhCc-cHHHHHHHHHHHHHHhHHhcCCCCCCHHHHHHHHHHHHHHHHH
No 389
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=33.87 E-value=5.7e+02 Score=32.85 Aligned_cols=120 Identities=15% Similarity=0.109 Sum_probs=78.8
Q ss_pred cCCHHHHHH------HHHHHHH-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC-------CCCCcHHHHHHHHHH
Q 004093 299 SGSIDAAIK------VFQRALK-ALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTD-------SVNTTALAHIQFIRF 364 (774)
Q Consensus 299 ~g~~e~A~~------v~erAl~-~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~-------~~~~~~~~~~~~a~~ 364 (774)
.|.+.+|++ ++++-.. ..|....-+..++.++...++.++|...=.++.-. +.......+...+.+
T Consensus 945 e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~ 1024 (1236)
T KOG1839|consen 945 EDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALY 1024 (1236)
T ss_pred ccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHH
Confidence 455555655 4443332 24566666677888888889988888775555432 222234556666667
Q ss_pred HHHhcCHHHHHHHHHHHhcC--------CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 004093 365 LRRTEGVEAARKYFLDARKS--------PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR 419 (774)
Q Consensus 365 ~~r~~~~~~Ar~if~~al~~--------~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~ 419 (774)
+...++...|.+.+.+++.. .+....+..+...++... ++.+.|.+..+.|++.
T Consensus 1025 ~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v-~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1025 EFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGV-EEADTALRYLESALAK 1086 (1236)
T ss_pred HHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhH-HHHHHHHHHHHHHHHH
Confidence 77778888899999888752 222355566666665554 7888999999999884
No 390
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=33.67 E-value=4.2e+02 Score=25.08 Aligned_cols=81 Identities=16% Similarity=0.092 Sum_probs=47.0
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
+..+|++.+|-. .....+..-.....+-..|.-++--+++....+....++.+.+..|..+.+.|+..++.+++.+
T Consensus 70 ~NlKrVi~C~~~----~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 70 GNLKRVIECYAK----RNKLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp S-THHHHHHHHH----TT---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cchHHHHHHHHH----hcchHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 345666665532 2233344444455666777777777777777765556677777888888888888888888887
Q ss_pred HhcCC
Q 004093 346 LLTDS 350 (774)
Q Consensus 346 ~l~~~ 350 (774)
+.+..
T Consensus 146 ACekG 150 (161)
T PF09205_consen 146 ACEKG 150 (161)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 77654
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=33.16 E-value=1.1e+02 Score=30.17 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004093 38 VAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL 91 (774)
Q Consensus 38 i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p 91 (774)
.+..++..++.+...|+. .+...|+.....+|+.++|+++.+++...+|
T Consensus 127 l~~~~~~a~~~l~~~P~~-----~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDP-----NVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 677788999999999975 8999999999999999999999999999888
No 392
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=32.44 E-value=1.9e+02 Score=30.11 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCHHHHHHHHHHHHH
Q 004093 41 AAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC-LQVPLWRCYIRFIRK 105 (774)
Q Consensus 41 Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~-p~~~lW~~Yl~~~~~ 105 (774)
|+..|.+|+.+.|.+ +..|..++-+....++.-.|.-.|-|++... |.............+
T Consensus 1 A~~~Y~~A~~l~P~~----G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN----GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB----SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC----CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 678999999999999 9999999999999999989999999999653 655555555554443
No 393
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.93 E-value=8.7e+02 Score=28.25 Aligned_cols=217 Identities=14% Similarity=0.055 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHhCCHHHHHHHHH
Q 004093 269 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEML----RYAFAELEESRGAIAAAKKLYE 344 (774)
Q Consensus 269 ~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l----~~~~a~l~e~~g~~e~A~~iye 344 (774)
+.............|.++-.-+.++..+...|+.+.|+.+++.++. +.-..+ .+..+-...-..++.+|-..+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3333445555556788877777889999999998889999998887 222222 1223333333456777777777
Q ss_pred HHhcCCCCCcHHHHHHHHH----------HHHHhcCHHHHHHHHHHHh-------cC-----------------CC----
Q 004093 345 SLLTDSVNTTALAHIQFIR----------FLRRTEGVEAARKYFLDAR-------KS-----------------PN---- 386 (774)
Q Consensus 345 k~l~~~~~~~~~~~~~~a~----------~~~r~~~~~~Ar~if~~al-------~~-----------------~~---- 386 (774)
.+.+.... +.++..|.. ...-.++.+.|..+++.+. +. .+
T Consensus 328 ~L~desdW--S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~ 405 (546)
T KOG3783|consen 328 LLRDESDW--SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNAS 405 (546)
T ss_pred HHHhhhhh--hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccc
Confidence 77776654 334444433 1111234444444444322 11 00
Q ss_pred C-CHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHH--cCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHhcCCc--
Q 004093 387 F-TYHVYVAYALMAFC-Q-DKDPKLAHNVFEAGLKR--FMHEPAYI---LEYADFLSRLNDDRNIRALFERALSSLPP-- 456 (774)
Q Consensus 387 ~-~~~~~i~~A~lE~~-~-~gd~~~A~~ife~al~~--~p~~~~l~---~~ya~~l~~~gd~~~Ar~lfEraL~~~p~-- 456 (774)
+ ..+-|...+++ |+ + ....+...+ ++..+.. ..+.-+.. +..+-.+.++|+...|..+|..++++...
T Consensus 406 ~~la~P~~El~Y~-Wngf~~~s~~~l~k-~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~ 483 (546)
T KOG3783|consen 406 ILLASPYYELAYF-WNGFSRMSKNELEK-MRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRT 483 (546)
T ss_pred ccccchHHHHHHH-HhhcccCChhhHHH-HHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 0 01112222222 11 0 012222221 1222221 11222222 23345677889999999999999964211
Q ss_pred h----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 457 E----ESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 457 e----~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
+ -....|+.-+-+=...|.+....+.+.|+.+-..
T Consensus 484 ~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 484 EDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred cccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 0 1134555555555456668888888888876664
No 394
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=31.42 E-value=1.6e+02 Score=34.58 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
..-..+.-++++..-+..+.|-.+|++.+..+|+ ..++.||.-+.+.|-..+|+.++++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (578)
T PRK15490 41 TSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILKK 99 (578)
T ss_pred hHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3344455577777778888999999999999888 5667888888888888888888873
No 395
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=31.37 E-value=74 Score=22.83 Aligned_cols=29 Identities=14% Similarity=0.167 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004093 61 KFWKQYVEAYMAVNNDDATKQLFSRCLLI 89 (774)
Q Consensus 61 ~~W~~y~~~e~~~~n~~~a~~ifeRaL~~ 89 (774)
+....++++-+...||+.|..=|++||.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35667888889999999999999999875
No 396
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=31.11 E-value=6.9e+02 Score=28.06 Aligned_cols=149 Identities=13% Similarity=0.126 Sum_probs=82.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCC----C----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC-----CCCCHHH
Q 004093 325 AFAELEESRGAIAAAKKLYESLLTDSV----N----TTALAHIQFIRFLRRTEGVEAARKYFLDARKS-----PNFTYHV 391 (774)
Q Consensus 325 ~~a~l~e~~g~~e~A~~iyek~l~~~~----~----~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~-----~~~~~~~ 391 (774)
.-..++...+++.+|..+-+..+..-. . -.+.+|..+...+...++...-|..|...+.. ....-.+
T Consensus 131 Lv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qav 210 (493)
T KOG2581|consen 131 LVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAV 210 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHH
Confidence 334455556677777666555443211 1 02456666666666777777777777655432 2234556
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHH----hcCChhHHHHHHHHHHhcCCch------hH
Q 004093 392 YVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE--PAYILEYADFLS----RLNDDRNIRALFERALSSLPPE------ES 459 (774)
Q Consensus 392 ~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~--~~l~~~ya~~l~----~~gd~~~Ar~lfEraL~~~p~e------~~ 459 (774)
.+++..=-|-.++-++.|-+.-.+.. +|+. ..-|-.|.-++- -+.+++.|..+|-.|+.+-|.+ +.
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~ 288 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQ 288 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHH
Confidence 66654422323355666655433322 4442 234444443333 3578999999999999987732 22
Q ss_pred HHHHHHHHHHHHHhCCHH
Q 004093 460 IEVWKRFTQFEQMYGDLD 477 (774)
Q Consensus 460 ~~lw~~~~~fE~~~Gd~~ 477 (774)
...|. +..+.-.|+.+
T Consensus 289 v~k~~--ivv~ll~geiP 304 (493)
T KOG2581|consen 289 VNKLM--IVVELLLGEIP 304 (493)
T ss_pred HHHHH--HHHHHHcCCCc
Confidence 33443 33444567654
No 397
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.69 E-value=1.1e+03 Score=28.88 Aligned_cols=61 Identities=15% Similarity=0.337 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHH-------HHHHhcCCchhHHHHHHHHHHHHHHh
Q 004093 405 DPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALF-------ERALSSLPPEESIEVWKRFTQFEQMY 473 (774)
Q Consensus 405 d~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lf-------EraL~~~p~e~~~~lw~~~~~fE~~~ 473 (774)
+.++|++|.. ...|+.+.+-++-+.|+-.+|..+. |+|++.+......++|+.++.+-..+
T Consensus 636 ~lekA~eiC~--------q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D~eLWe~LI~~~ldk 703 (846)
T KOG2066|consen 636 NLEKALEICS--------QKNFYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDDSELWEDLINYSLDK 703 (846)
T ss_pred CHHHHHHHHH--------hhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHhhcC
Confidence 5566666653 2235555555667778777776654 55666555445689999998875443
No 398
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=30.52 E-value=7.4e+02 Score=27.01 Aligned_cols=25 Identities=16% Similarity=-0.077 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 321 MLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 321 ~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
+.|...++++.+.|+.+.|.+.+.+
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3455555555555555555444433
No 399
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.05 E-value=7.2e+02 Score=26.35 Aligned_cols=212 Identities=16% Similarity=0.141 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCCCCCC
Q 004093 160 RMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEI-DWNMLAVPPTGS 238 (774)
Q Consensus 160 ~~~~ar~vYqral~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L-~~~~~~~pP~~~ 238 (774)
..++|..-|++.+.+....-+-=|++..+.-. +.=....|.+....|++...|.+.- .++..
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiK----------I~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS------- 104 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIK----------INFRLGNYKEMMERYKQLLTYIKSAVTRNYS------- 104 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHH----------HHhccccHHHHHHHHHHHHHHHHHHHhcccc-------
Confidence 46778888888887632221211222111100 0011345555555666666665432 22211
Q ss_pred chhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHh--cCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHH
Q 004093 239 YKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMY--LYHYPDIWY----DYATWNAKSGSIDAAIKVFQRA 312 (774)
Q Consensus 239 ~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~--~p~~~~iW~----~ya~~l~~~g~~e~A~~v~erA 312 (774)
++....-..||...+ ........|+-.|.. ...+..+|+ .++.++...+.+.+..+++.+.
T Consensus 105 ---EKsIN~IlDyiStS~----------~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqL 171 (440)
T KOG1464|consen 105 ---EKSINSILDYISTSK----------NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQL 171 (440)
T ss_pred ---HHHHHHHHHHHhhhh----------hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHH
Confidence 112222334444222 122334567776664 345666776 4566666666666666666666
Q ss_pred HHhCCCC---------HHHHHHH---HHHHHHhCCHHHHHHHHHHHhcCCCCCc-HH----HHHHHHHHHHHhcCHHHHH
Q 004093 313 LKALPDS---------EMLRYAF---AELEESRGAIAAAKKLYESLLTDSVNTT-AL----AHIQFIRFLRRTEGVEAAR 375 (774)
Q Consensus 313 l~~~P~~---------~~l~~~~---a~l~e~~g~~e~A~~iyek~l~~~~~~~-~~----~~~~~a~~~~r~~~~~~Ar 375 (774)
-..|-.. ..|.-.| ..++-.+++-.+...+|++++....--+ +. +.-.-+.+..|.|.+++|-
T Consensus 172 h~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 172 HQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred HHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 5554321 1233233 3455556777788899999987643211 11 1122234556677777777
Q ss_pred HHHHHHhcC------C-CCCHHHHHHHHHHHHh
Q 004093 376 KYFLDARKS------P-NFTYHVYVAYALMAFC 401 (774)
Q Consensus 376 ~if~~al~~------~-~~~~~~~i~~A~lE~~ 401 (774)
.-|-.|.+. | +.++.-|+-+|.|...
T Consensus 252 TDFFEAFKNYDEsGspRRttCLKYLVLANMLmk 284 (440)
T KOG1464|consen 252 TDFFEAFKNYDESGSPRRTTCLKYLVLANMLMK 284 (440)
T ss_pred hHHHHHHhcccccCCcchhHHHHHHHHHHHHHH
Confidence 666666653 1 2246667777777654
No 400
>KOG4425 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.76 E-value=96 Score=34.71 Aligned_cols=70 Identities=11% Similarity=0.018 Sum_probs=36.6
Q ss_pred cCCHHHHHHHhhCCCCCCCCCCHHHHHHHHhcCCCCCCCcCCCCCCCCCCCC--------------CCCCCcCCCCCCCC
Q 004093 630 AASPAIFAFLANLPAVEGPTPNVDIVLSICLQSDIPTGQMGKSPTTYPTPIP--------------TGAARSASGISGSN 695 (774)
Q Consensus 630 ~~p~~~~~~~~~~p~~~gp~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 695 (774)
++|+++-.||++--.+-=--...|-+-=.|.+..|+....--..-+.+.... ..++|+||-++.|-
T Consensus 105 htp~pve~llsrkkqimmehssldhiqfklieielaak~~kaeaaa~aaaa~eqkdekaeevenret~p~psts~~~ssl 184 (900)
T KOG4425|consen 105 HTPGPVEPLLSRKKQIMMEHSSLDHIQFKLIEIELAAKPPKAEAAAGAAAAAEQKDEKAEEVENRETLPAPSTSALFSSL 184 (900)
T ss_pred CCCCchHHHHhhhhhhhhccccchhhhhheeeeecCCCCCcccccccccccccccchhhhhhhcccCCCCCchhhhhhhc
Confidence 7788888888765433222234455545566677776311100000011111 16788888888876
Q ss_pred CCCC
Q 004093 696 KSHP 699 (774)
Q Consensus 696 ~~~~ 699 (774)
.|+.
T Consensus 185 ~sp~ 188 (900)
T KOG4425|consen 185 FSPL 188 (900)
T ss_pred cCCC
Confidence 6643
No 401
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=26.38 E-value=8.9e+02 Score=28.52 Aligned_cols=68 Identities=18% Similarity=-0.012 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcC
Q 004093 354 TALAHIQFIRFLRRTEGVEAARKYFLDARKSPN-FTYHVYVAYALMAFC-QDKDPKLAHNVFEAGLKRFM 421 (774)
Q Consensus 354 ~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~-~~~~~~i~~A~lE~~-~~gd~~~A~~ife~al~~~p 421 (774)
...+|..|+-...+.+++..||.-|+++.+.+. ..+++......+... -..++...+++|+...+..|
T Consensus 586 ~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ieGgpp~dVq~Vrem~dhlak~ap 655 (1141)
T KOG1811|consen 586 TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINLIEGGPPRDVQDVREMLDHLAKPAP 655 (1141)
T ss_pred cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhhcCCCcchHHHHHHHHHHhccCCc
Confidence 346899999999999999999999999998753 346666665554211 11245667778877766543
No 402
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=26.13 E-value=2.8e+02 Score=30.61 Aligned_cols=45 Identities=33% Similarity=0.370 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 302 IDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 302 ~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
+-+|.-++|.++...|.+..+.+.+..++...|-...|...|..+
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 457888999999999999988888889999999988888888653
No 403
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.14 E-value=3.7e+02 Score=27.86 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 004093 304 AAIKVFQRALKALPDS------EMLRYAFAELEESRGAIAAAKKLYESLLT 348 (774)
Q Consensus 304 ~A~~v~erAl~~~P~~------~~l~~~~a~l~e~~g~~e~A~~iyek~l~ 348 (774)
..++++++|+..+... ..+-+.+|..+...|++++|.++|+.+..
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~ 206 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAAS 206 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455555555443211 22344566666677777777777777654
No 404
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.74 E-value=1.2e+03 Score=27.31 Aligned_cols=83 Identities=13% Similarity=0.080 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004093 303 DAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT-TALAHIQFIRFLRRTEGVEAARKYFLDA 381 (774)
Q Consensus 303 e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~-~~~~~~~~a~~~~r~~~~~~Ar~if~~a 381 (774)
+...+.+.......|++..+.+.++.++...|+.+.|...++..++..-.+ .+..+...+-...-+-++..|-..|...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 445555666666789998888899999999999899999999888711000 0111112222222244566776666666
Q ss_pred hcCC
Q 004093 382 RKSP 385 (774)
Q Consensus 382 l~~~ 385 (774)
.+..
T Consensus 330 ~des 333 (546)
T KOG3783|consen 330 RDES 333 (546)
T ss_pred Hhhh
Confidence 6543
No 405
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=24.56 E-value=9.4e+02 Score=26.20 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=51.2
Q ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHhcCChhHHHHHHH--HHHhcCCch-hHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004093 410 HNVFEAGLKRF---MHEPAYILEYADFLSRLNDDRNIRALFE--RALSSLPPE-ESIEVWKRFTQFEQMYGDLDSTLKVE 483 (774)
Q Consensus 410 ~~ife~al~~~---p~~~~l~~~ya~~l~~~gd~~~Ar~lfE--raL~~~p~e-~~~~lw~~~~~fE~~~Gd~~~i~kv~ 483 (774)
+..++..-+.+ |+..+....|+.|..++|++..|-.++- |++...+.. .-..+|-.+. -|.-..+++.+...+
T Consensus 112 ~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlA-SEIL~qnWd~A~edL 190 (432)
T KOG2758|consen 112 VQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLA-SEILTQNWDGALEDL 190 (432)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHH-HHHHHhhHHHHHHHH
Confidence 44555555543 4445667899999999999988877544 444443321 1234564433 344467788888888
Q ss_pred HHHHHHcc
Q 004093 484 QRRKEALS 491 (774)
Q Consensus 484 ~R~~~~~p 491 (774)
-|..+...
T Consensus 191 ~rLre~ID 198 (432)
T KOG2758|consen 191 TRLREYID 198 (432)
T ss_pred HHHHHHHc
Confidence 88887775
No 406
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=23.64 E-value=39 Score=34.06 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=20.7
Q ss_pred cCCCCCCccccCCCCCCCCCCCCC
Q 004093 572 IYPDTSQMVIYDPRQKPGIGISPS 595 (774)
Q Consensus 572 ~~p~~~~~~~~~p~~~~~~~~~~~ 595 (774)
..||++|++|+|.|.+..||.-|.
T Consensus 261 a~PDF~~~lp~KsrL~tL~G~iP~ 284 (330)
T COG4170 261 AIPDFGSALPHKSRLNTLPGAIPL 284 (330)
T ss_pred hCccccccCcchhhhccCCCcCch
Confidence 479999999999999998887554
No 407
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=23.57 E-value=6.8e+02 Score=24.26 Aligned_cols=58 Identities=12% Similarity=-0.074 Sum_probs=26.0
Q ss_pred HHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCH
Q 004093 366 RRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 424 (774)
Q Consensus 366 ~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~ 424 (774)
.+.++.+.+..++.-.+..-+....+-+--+.+.... |++..|+.+|+......+..+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r-~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVR-GDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-CCHHHHHHHHHHHhccCCCCh
Confidence 3444555555555544443333222222222222222 566666666666554444443
No 408
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=22.96 E-value=1.1e+02 Score=25.58 Aligned_cols=17 Identities=6% Similarity=0.163 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHHHHHHc
Q 004093 404 KDPKLAHNVFEAGLKRF 420 (774)
Q Consensus 404 gd~~~A~~ife~al~~~ 420 (774)
|+++.|..+|..+++.+
T Consensus 20 gny~eA~~lY~~ale~~ 36 (75)
T cd02680 20 GNAEEAIELYTEAVELC 36 (75)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 66677777777666543
No 409
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=22.72 E-value=2.8e+02 Score=26.23 Aligned_cols=55 Identities=16% Similarity=0.051 Sum_probs=34.3
Q ss_pred cCHHHHHHHHHHHhc-CCCC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHH
Q 004093 369 EGVEAARKYFLDARK-SPNF---TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAY 426 (774)
Q Consensus 369 ~~~~~Ar~if~~al~-~~~~---~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l 426 (774)
.++.+...+|+..++ .++. .+-.|++.+. |+. |++++++++....+...|+|...
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~--yRl-keY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGH--YRL-KEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHH--HHH-hhHHHHHHHHHHHHhhCCCcHHH
Confidence 455666777777765 2222 2333443333 454 88888888888888888777543
No 410
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=22.68 E-value=8.9e+02 Score=25.24 Aligned_cols=117 Identities=14% Similarity=-0.016 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh-------c
Q 004093 301 SIDAAIKVFQRALKALPDSEMLRYAFAELEES----RGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT-------E 369 (774)
Q Consensus 301 ~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~----~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~-------~ 369 (774)
+..+|.+.|..+.. .......+.++.++.. ..+..+|...|+++..........+...++.++..- .
T Consensus 92 ~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~ 169 (292)
T COG0790 92 DKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169 (292)
T ss_pred cHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence 45667777774433 2333444556666654 236677777777777665321011123333333221 1
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHcC
Q 004093 370 GVEAARKYFLDARKSPNFTYHVYVAYALMAFC---QDKDPKLAHNVFEAGLKRFM 421 (774)
Q Consensus 370 ~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~---~~gd~~~A~~ife~al~~~p 421 (774)
+...|+..|.++..... .......+.+... +..|..+|.+.|.++.+.-.
T Consensus 170 ~~~~A~~~~~~aa~~~~--~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 170 DDKKALYLYRKAAELGN--PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHhHHHHHHHHHHhcC--HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 23467777877776653 3444444443222 23477888888888877644
No 411
>KOG3779 consensus Homeobox transcription factor prospero [Transcription]
Probab=22.65 E-value=1.9e+02 Score=32.25 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=17.3
Q ss_pred CCCCCCCCCCCCCCCccccccCCCCccccCCCC
Q 004093 587 KPGIGISPSTTATGASSALNALSNPMVATGGGG 619 (774)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (774)
+++|-+||.| +.||.-||+.+|+-+.+||+
T Consensus 446 ~~~PQ~~~~~---~P~~~~~~m~~~~~~~~GG~ 475 (737)
T KOG3779|consen 446 NSSPQSASGP---APGGHHQPLHQSPLSATGGF 475 (737)
T ss_pred CCCcccCCCC---CCCCCCccCCCCCCcccCCC
Confidence 3344455433 34666777777776666655
No 412
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=22.38 E-value=9.9e+02 Score=25.67 Aligned_cols=99 Identities=11% Similarity=0.152 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCCCHH-------HHHHHHHHHHHHcCCCH
Q 004093 355 ALAHIQFIRFLRRTEGVEAARKYFLDARKS---PNFTYHVYVAYALMAFCQDKDPK-------LAHNVFEAGLKRFMHEP 424 (774)
Q Consensus 355 ~~~~~~~a~~~~r~~~~~~Ar~if~~al~~---~~~~~~~~i~~A~lE~~~~gd~~-------~A~~ife~al~~~p~~~ 424 (774)
+.+|...+.++.+.++.+.+.++..+.+.. .....++++..+.+-+-. +|.. .+-.++|+|-.-... .
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y-~d~~vV~e~lE~~~~~iEkGgDWeRr-N 192 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIY-GDRKVVEESLEVADDIIEKGGDWERR-N 192 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhCCCHHhh-h
Confidence 567888888887777777766665554432 122355555555544332 4432 223333333211111 1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 425 AYILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 425 ~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
.+-..++-|.....++.+|-.++-..+..+.
T Consensus 193 RyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 193 RYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 2333444555566677777777777776554
No 413
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.32 E-value=4.9e+02 Score=31.86 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 004093 356 LAHIQFIRFLRRTEGVEAARKYFLDARKS 384 (774)
Q Consensus 356 ~~~~~~a~~~~r~~~~~~Ar~if~~al~~ 384 (774)
.++..|+.++.+.|++++|.+.|-+++..
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 34455555555555555555555555543
No 414
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.88 E-value=1.6e+02 Score=35.67 Aligned_cols=51 Identities=20% Similarity=0.127 Sum_probs=42.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004093 282 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEES 332 (774)
Q Consensus 282 ~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~ 332 (774)
+|..+.+|-.|..++.+.++.+....++.+|+..||....+++-+++.+-.
T Consensus 832 l~~~~~~WR~yl~~lskl~~~~~~~~~~tkA~~sCpW~K~l~md~ie~l~v 882 (913)
T KOG1972|consen 832 LPDENSKWRDYLEALSKLLNKERSKAASTKALDSCPWAKWLEMDVIEDLPV 882 (913)
T ss_pred CCcchhHHHHHHHHHHHhhhhhhhHHHHHHHhhcCchHHHHHHHHHHhccc
Confidence 477888999999999888888888889999999999988888777766554
No 415
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.68 E-value=1.3e+03 Score=26.72 Aligned_cols=167 Identities=14% Similarity=0.117 Sum_probs=102.5
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcH--HHHHHHHHHH
Q 004093 298 KSGSIDAAIKVFQRALKA---LPDS-------EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTA--LAHIQFIRFL 365 (774)
Q Consensus 298 ~~g~~e~A~~v~erAl~~---~P~~-------~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~--~~~~~~a~~~ 365 (774)
-.|++.+|.+-...+..- .|.- ..+++..+.+...-+.++.|..-|-.+++.-..... .+...++-.+
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 357888887766666553 4542 345556666666667889999989888876443111 2234555566
Q ss_pred HHhcCHHHHHHHHHHHhcC---CCC----CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC--CCHHHHHHHHHHH--
Q 004093 366 RRTEGVEAARKYFLDARKS---PNF----TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM--HEPAYILEYADFL-- 434 (774)
Q Consensus 366 ~r~~~~~~Ar~if~~al~~---~~~----~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p--~~~~l~~~ya~~l-- 434 (774)
.+.++-+..-++++..--. +.+ ...++..++.+.+.. +++.+|+....+.++... +...+.-.+.-++
T Consensus 415 L~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q-n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~ 493 (629)
T KOG2300|consen 415 LRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ-NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSH 493 (629)
T ss_pred HHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence 6666655555555443221 111 245566677777775 899999999999998642 2223333333333
Q ss_pred --HhcCChhHHHHHHHHHHh---cCCchhHHHHHHHH
Q 004093 435 --SRLNDDRNIRALFERALS---SLPPEESIEVWKRF 466 (774)
Q Consensus 435 --~~~gd~~~Ar~lfEraL~---~~p~e~~~~lw~~~ 466 (774)
...|+..+++....-+++ +.| +-...+|-.-
T Consensus 494 v~lslgn~~es~nmvrpamqlAkKi~-Di~vqLws~s 529 (629)
T KOG2300|consen 494 VFLSLGNTVESRNMVRPAMQLAKKIP-DIPVQLWSSS 529 (629)
T ss_pred HHHHhcchHHHHhccchHHHHHhcCC-CchHHHHHHH
Confidence 345888888887777775 344 5667888654
No 416
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=21.48 E-value=3.6e+02 Score=28.51 Aligned_cols=58 Identities=12% Similarity=0.061 Sum_probs=43.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 004093 296 NAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT 353 (774)
Q Consensus 296 l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~ 353 (774)
+.+.++.+.|..+.++.+..+|++..-+.--+.++.+.|...-|++-++.++.+.|++
T Consensus 191 ~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 191 LLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 3445677788888888888888877666667777777787778888888877777764
No 417
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=21.25 E-value=1.5e+03 Score=27.40 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH---------HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVF---------QRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~---------erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
.-|...++++...++.+.-.+.| +......|++..+.-.+|++....|.-++|.+.|-+
T Consensus 810 ~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 810 MEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 45666666666666544322222 233344666666666677777777766666666644
No 418
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.05 E-value=9.7e+02 Score=25.68 Aligned_cols=26 Identities=19% Similarity=0.186 Sum_probs=18.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC
Q 004093 429 EYADFLSRLNDDRNIRALFERALSSL 454 (774)
Q Consensus 429 ~ya~~l~~~gd~~~Ar~lfEraL~~~ 454 (774)
..+-++.+.|.+..|..+..-.+..+
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~El 155 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHEL 155 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 44556667788888888888777643
No 419
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=21.01 E-value=3.1e+02 Score=19.32 Aligned_cols=9 Identities=11% Similarity=-0.164 Sum_probs=5.0
Q ss_pred CCHHHHHHH
Q 004093 404 KDPKLAHNV 412 (774)
Q Consensus 404 gd~~~A~~i 412 (774)
|+++.|+++
T Consensus 15 ~ky~~A~~~ 23 (36)
T PF07720_consen 15 GKYDEAIHF 23 (36)
T ss_dssp T-HHHHHHH
T ss_pred hhHHHHHHH
Confidence 566666666
No 420
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=20.97 E-value=8.7e+02 Score=24.53 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhCCHHHH
Q 004093 284 HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPD----SEMLRYAFAELEESRGAIAAA 339 (774)
Q Consensus 284 ~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~----~~~l~~~~a~l~e~~g~~e~A 339 (774)
..+++-+.+|.|+. ..|.++++.+|-++++.... +.++...++.++.+.++++.|
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 56788888888886 45778888888888886543 366667788888888777655
No 421
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=20.94 E-value=1.2e+03 Score=25.99 Aligned_cols=56 Identities=25% Similarity=0.236 Sum_probs=39.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HhCCHHHHHHHHHHHhcC
Q 004093 293 ATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEE-----SRGAIAAAKKLYESLLTD 349 (774)
Q Consensus 293 a~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e-----~~g~~e~A~~iyek~l~~ 349 (774)
+.-+...+++..|.++|+..+...|.+.. +-.|..+.+ ..-++++|.+.+++++..
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRRLPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44455788999999999999987676555 222222222 356788999999988875
No 422
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.69 E-value=1.6e+03 Score=27.63 Aligned_cols=205 Identities=15% Similarity=0.167 Sum_probs=100.0
Q ss_pred HHHHHHHHhcC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 273 FTYEQCLMYLY-------HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 273 ~~yeraL~~~p-------~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
..|.-|+.+-- .-.++...||.++.+.|++++|..-|-++|...-.+..+. .|.+. ..+.....+++.
T Consensus 348 ~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~-kfLda----q~IknLt~YLe~ 422 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIK-KFLDA----QRIKNLTSYLEA 422 (933)
T ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHH-HhcCH----HHHHHHHHHHHH
Confidence 34566665421 1346888999999999999999999999987643332221 22211 123344455666
Q ss_pred HhcCCCC---CcHHHHHHHHHHHHHhcCH-------------------HHHHHHHHHHhcC-------CCCCHHHHHHHH
Q 004093 346 LLTDSVN---TTALAHIQFIRFLRRTEGV-------------------EAARKYFLDARKS-------PNFTYHVYVAYA 396 (774)
Q Consensus 346 ~l~~~~~---~~~~~~~~~a~~~~r~~~~-------------------~~Ar~if~~al~~-------~~~~~~~~i~~A 396 (774)
+.+..-. ....+...|+ ..++. +.|.+++.++-=. .....+-|+--.
T Consensus 423 L~~~gla~~dhttlLLncYi----Klkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~i 498 (933)
T KOG2114|consen 423 LHKKGLANSDHTTLLLNCYI----KLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDI 498 (933)
T ss_pred HHHcccccchhHHHHHHHHH----HhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHH
Confidence 6654322 1233434444 33333 3333333321000 000011122111
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh-cCCchhHHHHHH--HHHHHH-H
Q 004093 397 LMAFCQDKDPKLAHNVFEAGLKRFMHE-PAYILEYADFLSRLNDDRNIRALFERALS-SLPPEESIEVWK--RFTQFE-Q 471 (774)
Q Consensus 397 ~lE~~~~gd~~~A~~ife~al~~~p~~-~~l~~~ya~~l~~~gd~~~Ar~lfEraL~-~~p~e~~~~lw~--~~~~fE-~ 471 (774)
.++ ..+++++|.+.++.. .+.+ ......|+..++.. .+++...++-+.++ ..+..+....-+ ..++|- .
T Consensus 499 lle--~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~i 572 (933)
T KOG2114|consen 499 LLE--DLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGI 572 (933)
T ss_pred HHH--HhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheee
Confidence 221 135666666654322 2222 23456777766643 45666666666655 332222111111 111111 1
Q ss_pred HhCCHHHHHHHHHHHHHHccc
Q 004093 472 MYGDLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 472 ~~Gd~~~i~kv~~R~~~~~pk 492 (774)
-.+++........++.+.-|+
T Consensus 573 f~~~~~~~~~Fl~~~~E~s~~ 593 (933)
T KOG2114|consen 573 FSQNYQILLNFLESMSEISPD 593 (933)
T ss_pred eccCHHHHHHHHHHHHhcCCC
Confidence 246777777778888877774
Done!