Query 004093
Match_columns 774
No_of_seqs 323 out of 2276
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 14:02:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 100.0 1.9E-67 6.6E-72 619.9 55.0 504 10-529 55-601 (679)
2 2ooe_A Cleavage stimulation fa 100.0 4.9E-61 1.7E-65 555.2 60.3 509 10-531 2-528 (530)
3 2uy1_A Cleavage stimulation fa 100.0 9.9E-55 3.4E-59 497.7 44.3 446 37-539 10-481 (493)
4 2ond_A Cleavage stimulation fa 100.0 3.7E-34 1.3E-38 307.1 36.1 285 241-531 4-306 (308)
5 4e6h_A MRNA 3'-END-processing 100.0 7.7E-32 2.6E-36 317.2 41.5 420 38-491 48-535 (679)
6 2ooe_A Cleavage stimulation fa 100.0 5.4E-28 1.9E-32 278.7 42.0 411 11-455 36-494 (530)
7 2uy1_A Cleavage stimulation fa 100.0 2.3E-27 8E-32 271.1 30.0 409 24-484 16-447 (493)
8 1w3b_A UDP-N-acetylglucosamine 99.9 2.8E-23 9.5E-28 228.3 42.6 376 33-474 10-387 (388)
9 1w3b_A UDP-N-acetylglucosamine 99.9 1.1E-22 3.7E-27 223.6 45.0 365 66-491 5-370 (388)
10 2xpi_A Anaphase-promoting comp 99.9 2.7E-22 9.2E-27 232.8 46.6 419 21-491 82-547 (597)
11 2xpi_A Anaphase-promoting comp 99.9 4.7E-22 1.6E-26 230.7 44.3 415 18-491 113-581 (597)
12 2y4t_A DNAJ homolog subfamily 99.9 2.4E-20 8.3E-25 208.1 41.4 333 12-467 17-370 (450)
13 3fp2_A TPR repeat-containing p 99.9 4.7E-20 1.6E-24 210.5 42.3 421 22-491 24-493 (537)
14 3ieg_A DNAJ homolog subfamily 99.9 2.6E-19 9.1E-24 191.9 43.7 328 22-470 2-350 (359)
15 2gw1_A Mitochondrial precursor 99.9 8.3E-20 2.8E-24 206.8 40.6 433 22-491 5-480 (514)
16 2gw1_A Mitochondrial precursor 99.9 9.7E-20 3.3E-24 206.2 38.5 393 12-466 31-489 (514)
17 3fp2_A TPR repeat-containing p 99.9 1.3E-18 4.5E-23 198.5 42.9 393 12-456 50-494 (537)
18 2ond_A Cleavage stimulation fa 99.8 2.7E-19 9.1E-24 191.3 26.2 186 269-456 81-273 (308)
19 2y4t_A DNAJ homolog subfamily 99.8 3.3E-17 1.1E-21 182.7 42.6 318 18-455 55-412 (450)
20 3ieg_A DNAJ homolog subfamily 99.8 1.7E-16 5.9E-21 169.9 40.1 318 60-491 3-337 (359)
21 3hym_B Cell division cycle pro 99.8 2.7E-17 9.1E-22 174.6 30.6 205 269-477 108-322 (330)
22 3hym_B Cell division cycle pro 99.8 5.6E-17 1.9E-21 172.0 30.0 169 270-439 143-320 (330)
23 4g1t_A Interferon-induced prot 99.8 6.2E-16 2.1E-20 173.8 33.5 140 18-174 46-204 (472)
24 4eqf_A PEX5-related protein; a 99.7 1.5E-16 5E-21 172.8 24.2 223 267-493 80-314 (365)
25 4eqf_A PEX5-related protein; a 99.7 1.2E-16 4E-21 173.6 22.5 224 267-491 114-358 (365)
26 1fch_A Peroxisomal targeting s 99.7 2.2E-16 7.7E-21 170.8 23.9 306 37-454 40-360 (368)
27 2pl2_A Hypothetical conserved 99.7 3.9E-16 1.3E-20 158.0 22.4 196 283-483 2-208 (217)
28 2pl2_A Hypothetical conserved 99.7 4.6E-16 1.6E-20 157.4 21.7 184 266-452 19-213 (217)
29 1fch_A Peroxisomal targeting s 99.7 3E-15 1E-19 161.9 26.4 222 267-493 79-318 (368)
30 2q7f_A YRRB protein; TPR, prot 99.7 2.2E-15 7.4E-20 152.7 22.4 202 268-473 39-240 (243)
31 3u4t_A TPR repeat-containing p 99.7 4.2E-15 1.4E-19 153.7 24.5 223 266-491 17-252 (272)
32 3cv0_A Peroxisome targeting si 99.7 5.2E-15 1.8E-19 156.5 25.8 222 267-492 36-272 (327)
33 2h6f_A Protein farnesyltransfe 99.7 5.4E-15 1.8E-19 163.1 26.6 221 267-491 112-350 (382)
34 3cv0_A Peroxisome targeting si 99.7 3.7E-15 1.3E-19 157.7 24.3 224 268-493 71-319 (327)
35 2vq2_A PILW, putative fimbrial 99.7 1.4E-14 4.8E-19 144.4 26.4 207 282-491 4-213 (225)
36 2ho1_A Type 4 fimbrial biogene 99.7 1.6E-14 5.6E-19 147.6 27.3 206 282-491 32-240 (252)
37 3vtx_A MAMA; tetratricopeptide 99.7 7.5E-15 2.6E-19 143.2 23.5 171 283-455 2-172 (184)
38 3uq3_A Heat shock protein STI1 99.7 4.5E-14 1.5E-18 143.9 27.9 213 266-491 19-238 (258)
39 2ho1_A Type 4 fimbrial biogene 99.6 6.3E-14 2.1E-18 143.2 28.4 186 268-455 53-240 (252)
40 4g1t_A Interferon-induced prot 99.6 6.9E-13 2.3E-17 148.9 37.0 372 60-491 51-461 (472)
41 2q7f_A YRRB protein; TPR, prot 99.6 1.9E-14 6.7E-19 145.6 21.0 203 285-491 22-224 (243)
42 2vq2_A PILW, putative fimbrial 99.6 3E-13 1E-17 134.6 29.2 188 266-455 22-213 (225)
43 2h6f_A Protein farnesyltransfe 99.6 1.8E-14 6.1E-19 159.0 18.6 205 278-486 89-302 (382)
44 4abn_A Tetratricopeptide repea 99.6 3.7E-14 1.3E-18 161.1 21.7 208 269-481 85-313 (474)
45 2xm6_A Protein corresponding t 99.6 1.1E-10 3.8E-15 132.5 47.9 371 18-453 34-432 (490)
46 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.7E-13 9.2E-18 139.9 23.2 222 266-491 19-246 (275)
47 4gyw_A UDP-N-acetylglucosamine 99.6 1E-13 3.5E-18 164.8 22.4 173 281-455 4-176 (723)
48 3uq3_A Heat shock protein STI1 99.6 1.4E-12 4.7E-17 132.8 27.6 177 268-454 54-237 (258)
49 3vtx_A MAMA; tetratricopeptide 99.5 4.5E-13 1.5E-17 130.5 20.7 159 266-426 19-177 (184)
50 4i17_A Hypothetical protein; T 99.5 6.2E-13 2.1E-17 134.4 21.7 198 283-491 4-211 (228)
51 3u4t_A TPR repeat-containing p 99.5 5.7E-13 2E-17 137.5 19.6 204 285-491 2-210 (272)
52 2xm6_A Protein corresponding t 99.5 2.4E-10 8.3E-15 129.7 42.2 340 20-422 72-435 (490)
53 4abn_A Tetratricopeptide repea 99.5 2.1E-12 7E-17 146.7 24.8 181 266-449 116-317 (474)
54 3as5_A MAMA; tetratricopeptide 99.5 2.6E-12 8.9E-17 123.3 20.5 168 286-455 8-175 (186)
55 3mkr_A Coatomer subunit epsilo 99.5 1E-11 3.4E-16 131.6 26.8 182 267-455 80-266 (291)
56 3mkr_A Coatomer subunit epsilo 99.5 4.5E-12 1.6E-16 134.3 23.7 203 282-493 61-268 (291)
57 1xnf_A Lipoprotein NLPI; TPR, 99.4 7.5E-12 2.6E-16 128.9 21.9 187 266-456 57-247 (275)
58 4i17_A Hypothetical protein; T 99.4 8.3E-12 2.8E-16 126.0 21.1 192 266-468 21-222 (228)
59 1ouv_A Conserved hypothetical 99.4 8.6E-11 2.9E-15 122.0 29.2 210 267-491 21-253 (273)
60 3qky_A Outer membrane assembly 99.4 7.3E-12 2.5E-16 129.5 20.0 176 280-456 9-227 (261)
61 4gyw_A UDP-N-acetylglucosamine 99.4 5.9E-12 2E-16 149.7 20.3 176 314-493 3-178 (723)
62 3sf4_A G-protein-signaling mod 99.4 1.7E-11 5.9E-16 133.5 22.5 149 270-419 165-336 (406)
63 3nf1_A KLC 1, kinesin light ch 99.4 8.6E-12 3E-16 130.6 18.5 208 283-491 24-309 (311)
64 4a1s_A PINS, partner of inscut 99.4 6.9E-12 2.4E-16 137.8 18.5 226 266-492 62-335 (411)
65 3ro2_A PINS homolog, G-protein 99.4 1.6E-11 5.6E-16 129.1 18.6 221 270-491 61-334 (338)
66 4h7y_A Dual specificity protei 99.4 6.2E-12 2.1E-16 115.9 12.8 111 280-392 7-131 (161)
67 1ouv_A Conserved hypothetical 99.3 5.2E-10 1.8E-14 116.0 28.3 197 282-491 2-217 (273)
68 3as5_A MAMA; tetratricopeptide 99.3 1.2E-10 4E-15 111.6 21.1 168 320-491 8-175 (186)
69 4ga2_A E3 SUMO-protein ligase 99.3 2.7E-12 9.2E-17 121.8 9.3 103 267-370 12-114 (150)
70 3ro2_A PINS homolog, G-protein 99.3 1.7E-11 5.7E-16 129.1 16.3 226 266-492 19-295 (338)
71 3urz_A Uncharacterized protein 99.3 8E-11 2.8E-15 117.8 20.5 169 285-456 3-189 (208)
72 3sf4_A G-protein-signaling mod 99.3 2.5E-11 8.6E-16 132.2 17.9 226 266-492 23-299 (406)
73 3qou_A Protein YBBN; thioredox 99.3 7.4E-11 2.5E-15 124.5 20.8 170 281-452 112-283 (287)
74 2pzi_A Probable serine/threoni 99.3 1.4E-11 4.9E-16 146.1 16.5 181 281-469 389-577 (681)
75 2pzi_A Probable serine/threoni 99.3 9.6E-12 3.3E-16 147.6 14.7 171 266-439 405-583 (681)
76 3edt_B KLC 2, kinesin light ch 99.3 1.7E-11 5.7E-16 126.2 14.5 217 269-489 18-281 (283)
77 4a1s_A PINS, partner of inscut 99.3 2.1E-11 7E-16 134.0 16.1 224 267-491 101-374 (411)
78 3nf1_A KLC 1, kinesin light ch 99.3 3.1E-11 1.1E-15 126.4 16.4 189 266-455 41-309 (311)
79 3dra_A Protein farnesyltransfe 99.3 1.1E-09 3.7E-14 116.6 27.3 223 267-491 48-290 (306)
80 2r5s_A Uncharacterized protein 99.3 2.9E-11 9.9E-16 117.4 13.9 167 283-452 3-172 (176)
81 2yhc_A BAMD, UPF0169 lipoprote 99.3 3.1E-10 1.1E-14 114.8 22.0 192 285-493 3-217 (225)
82 3urz_A Uncharacterized protein 99.2 1.1E-10 3.6E-15 116.9 15.3 155 266-423 18-190 (208)
83 4ga2_A E3 SUMO-protein ligase 99.2 5.3E-11 1.8E-15 112.8 12.4 146 292-439 3-149 (150)
84 1xi4_A Clathrin heavy chain; a 99.2 3.2E-08 1.1E-12 121.0 37.5 158 268-444 1211-1375(1630)
85 2vsy_A XCC0866; transferase, g 99.2 2.9E-10 1E-14 131.6 19.2 159 267-427 4-165 (568)
86 2fo7_A Synthetic consensus TPR 99.2 1E-09 3.4E-14 98.9 18.8 134 287-422 2-135 (136)
87 2r5s_A Uncharacterized protein 99.2 1.1E-10 3.7E-15 113.3 13.1 171 317-489 3-173 (176)
88 2vsy_A XCC0866; transferase, g 99.2 4E-10 1.4E-14 130.5 19.8 156 299-456 2-160 (568)
89 3qky_A Outer membrane assembly 99.2 9.9E-10 3.4E-14 113.3 20.3 178 313-491 8-226 (261)
90 3edt_B KLC 2, kinesin light ch 99.2 1.7E-10 5.7E-15 118.6 14.3 155 298-453 13-198 (283)
91 3qou_A Protein YBBN; thioredox 99.2 9.5E-10 3.2E-14 115.9 19.5 173 315-489 112-284 (287)
92 1qqe_A Vesicular transport pro 99.2 3.7E-10 1.3E-14 119.2 16.0 188 267-455 52-271 (292)
93 3ulq_A Response regulator aspa 99.1 3.3E-09 1.1E-13 115.9 23.5 181 269-452 160-367 (383)
94 3ulq_A Response regulator aspa 99.1 1.7E-09 6E-14 118.1 21.1 223 266-492 117-371 (383)
95 3e4b_A ALGK; tetratricopeptide 99.1 1.5E-08 5.2E-13 113.9 28.5 350 33-455 14-389 (452)
96 4gco_A Protein STI-1; structur 99.1 5.9E-10 2E-14 102.4 13.8 119 278-397 5-123 (126)
97 3q7a_A Farnesyltransferase alp 99.1 3.9E-08 1.3E-12 105.9 28.9 222 267-490 69-332 (349)
98 3gyz_A Chaperone protein IPGC; 99.1 2E-10 7E-15 109.3 9.6 113 274-387 24-136 (151)
99 1xi4_A Clathrin heavy chain; a 99.1 4.1E-07 1.4E-11 111.4 39.9 162 282-445 1276-1482(1630)
100 2fo7_A Synthetic consensus TPR 99.1 5E-09 1.7E-13 94.2 18.1 133 321-455 2-134 (136)
101 1qqe_A Vesicular transport pro 99.1 1.4E-09 4.8E-14 114.7 16.1 173 268-455 33-230 (292)
102 3dss_A Geranylgeranyl transfer 99.1 3.3E-08 1.1E-12 105.9 25.9 223 267-492 45-307 (331)
103 3q15_A PSP28, response regulat 99.1 1.1E-08 3.7E-13 111.7 22.6 221 267-491 116-367 (378)
104 3e4b_A ALGK; tetratricopeptide 99.0 4.7E-08 1.6E-12 109.9 28.1 359 65-489 8-387 (452)
105 2yhc_A BAMD, UPF0169 lipoprote 99.0 8.5E-09 2.9E-13 104.1 19.4 157 320-493 4-180 (225)
106 2c2l_A CHIP, carboxy terminus 99.0 1.1E-09 3.9E-14 115.0 13.1 173 283-469 1-178 (281)
107 2vgx_A Chaperone SYCD; alterna 99.0 1.6E-09 5.5E-14 102.3 12.0 111 274-385 9-119 (148)
108 4gco_A Protein STI-1; structur 99.0 3.5E-09 1.2E-13 97.1 13.3 119 313-433 6-124 (126)
109 3rjv_A Putative SEL1 repeat pr 99.0 1.8E-08 6.1E-13 101.0 19.6 174 272-454 6-198 (212)
110 1p5q_A FKBP52, FK506-binding p 99.0 1.6E-09 5.6E-14 117.0 12.5 164 269-453 130-294 (336)
111 4f3v_A ESX-1 secretion system 99.0 1.2E-09 4E-14 114.2 10.4 195 267-467 21-248 (282)
112 2xcb_A PCRH, regulatory protei 99.0 1.4E-09 4.7E-14 101.6 9.5 112 273-385 5-116 (142)
113 1p5q_A FKBP52, FK506-binding p 99.0 8.5E-10 2.9E-14 119.2 9.0 170 299-491 126-296 (336)
114 3dra_A Protein farnesyltransfe 99.0 3.3E-08 1.1E-12 105.1 21.0 198 267-466 84-299 (306)
115 1a17_A Serine/threonine protei 99.0 2E-08 7E-13 94.6 17.1 131 286-418 13-145 (166)
116 3gyz_A Chaperone protein IPGC; 98.9 3.5E-09 1.2E-13 100.7 11.6 113 341-455 23-135 (151)
117 2e2e_A Formate-dependent nitri 98.9 7E-09 2.4E-13 100.0 13.7 120 267-387 25-147 (177)
118 1hz4_A MALT regulatory protein 98.9 7.9E-08 2.7E-12 104.1 23.3 224 267-491 29-284 (373)
119 2vgx_A Chaperone SYCD; alterna 98.9 3.2E-09 1.1E-13 100.3 10.2 119 306-426 7-125 (148)
120 4h7y_A Dual specificity protei 98.9 7.8E-09 2.7E-13 95.4 12.0 111 315-427 8-131 (161)
121 2e2e_A Formate-dependent nitri 98.9 7.3E-09 2.5E-13 99.9 12.4 125 298-424 22-149 (177)
122 3upv_A Heat shock protein STI1 98.9 2E-08 7E-13 90.9 14.0 100 285-385 3-102 (126)
123 2xcb_A PCRH, regulatory protei 98.9 3.7E-09 1.3E-13 98.6 9.0 118 307-426 5-122 (142)
124 2ifu_A Gamma-SNAP; membrane fu 98.9 5.8E-08 2E-12 103.0 19.0 164 289-455 39-225 (307)
125 1a17_A Serine/threonine protei 98.9 5.4E-08 1.9E-12 91.6 16.8 132 357-491 15-148 (166)
126 1hz4_A MALT regulatory protein 98.9 2.1E-07 7.1E-12 100.8 23.7 224 267-492 68-325 (373)
127 2vyi_A SGTA protein; chaperone 98.9 3E-08 1E-12 88.8 13.9 115 283-398 9-123 (131)
128 1elw_A TPR1-domain of HOP; HOP 98.9 1E-07 3.5E-12 83.7 16.9 112 286-398 4-115 (118)
129 2lni_A Stress-induced-phosphop 98.8 2.4E-08 8.2E-13 90.2 12.7 115 283-398 13-127 (133)
130 3q15_A PSP28, response regulat 98.8 7.4E-08 2.5E-12 105.0 18.5 167 288-455 103-292 (378)
131 1dce_A Protein (RAB geranylger 98.8 6.9E-08 2.4E-12 111.7 19.1 175 267-442 44-244 (567)
132 3sz7_A HSC70 cochaperone (SGT) 98.8 2.9E-08 9.9E-13 94.6 13.0 109 284-393 9-117 (164)
133 1na0_A Designed protein CTPR3; 98.8 1.5E-07 5.3E-12 83.3 16.6 112 286-398 9-120 (125)
134 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.9E-07 6.5E-12 92.3 18.9 129 323-456 9-153 (213)
135 2lni_A Stress-induced-phosphop 98.8 6.9E-08 2.4E-12 87.1 14.2 115 319-435 15-129 (133)
136 1hh8_A P67PHOX, NCF-2, neutrop 98.8 7.9E-08 2.7E-12 95.0 15.8 130 289-423 9-154 (213)
137 2vyi_A SGTA protein; chaperone 98.8 9.3E-08 3.2E-12 85.5 14.9 122 317-440 9-130 (131)
138 2qfc_A PLCR protein; TPR, HTH, 98.8 3E-07 1E-11 96.5 20.9 170 283-453 72-266 (293)
139 2fbn_A 70 kDa peptidylprolyl i 98.8 1.1E-08 3.8E-13 100.8 9.1 87 356-443 89-175 (198)
140 1hxi_A PEX5, peroxisome target 98.8 5.8E-08 2E-12 88.1 13.2 99 287-386 18-116 (121)
141 2c2l_A CHIP, carboxy terminus 98.8 8.5E-09 2.9E-13 108.3 8.0 176 266-452 18-198 (281)
142 3upv_A Heat shock protein STI1 98.8 1.3E-07 4.3E-12 85.6 14.7 99 320-420 4-102 (126)
143 3q49_B STIP1 homology and U bo 98.8 1E-07 3.4E-12 87.1 14.2 103 281-384 4-106 (137)
144 2dba_A Smooth muscle cell asso 98.8 1.4E-07 4.9E-12 86.8 15.0 116 282-398 24-142 (148)
145 3u3w_A Transcriptional activat 98.7 2.1E-07 7.2E-12 97.7 17.5 160 292-452 81-265 (293)
146 1na0_A Designed protein CTPR3; 98.7 3.7E-07 1.3E-11 80.8 16.5 115 320-436 9-123 (125)
147 3q7a_A Farnesyltransferase alp 98.7 7.5E-07 2.6E-11 95.9 21.3 184 287-474 55-256 (349)
148 2kck_A TPR repeat; tetratricop 98.7 8.4E-08 2.9E-12 83.5 11.1 105 282-386 2-108 (112)
149 3rjv_A Putative SEL1 repeat pr 98.7 5.9E-07 2E-11 89.8 18.8 178 303-490 3-198 (212)
150 3dss_A Geranylgeranyl transfer 98.7 5.1E-06 1.8E-10 88.9 26.8 186 269-455 91-306 (331)
151 4gcn_A Protein STI-1; structur 98.7 2.6E-07 8.9E-12 84.5 14.2 99 286-384 8-112 (127)
152 2ifu_A Gamma-SNAP; membrane fu 98.7 6.1E-08 2.1E-12 102.8 11.3 201 266-492 5-226 (307)
153 2dba_A Smooth muscle cell asso 98.7 4.9E-07 1.7E-11 83.1 16.1 118 316-434 24-143 (148)
154 2if4_A ATFKBP42; FKBP-like, al 98.7 1.1E-08 3.9E-13 110.4 5.3 154 283-455 176-330 (338)
155 3sz7_A HSC70 cochaperone (SGT) 98.7 1.5E-07 5.1E-12 89.6 12.6 102 321-424 12-113 (164)
156 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 5.7E-08 2E-12 109.4 11.3 163 269-452 251-414 (457)
157 2fbn_A 70 kDa peptidylprolyl i 98.7 3.7E-08 1.3E-12 97.0 8.6 118 283-401 35-168 (198)
158 4f3v_A ESX-1 secretion system 98.7 4.6E-07 1.6E-11 94.6 17.2 191 298-491 18-239 (282)
159 1b89_A Protein (clathrin heavy 98.7 2.5E-07 8.5E-12 102.1 15.8 304 36-435 17-339 (449)
160 3mv2_B Coatomer subunit epsilo 98.7 8.1E-07 2.8E-11 93.9 18.8 177 273-455 87-284 (310)
161 1elw_A TPR1-domain of HOP; HOP 98.7 6E-07 2E-11 78.7 15.2 98 357-455 6-103 (118)
162 3q49_B STIP1 homology and U bo 98.6 3.1E-07 1.1E-11 83.8 13.4 105 316-422 5-109 (137)
163 3gw4_A Uncharacterized protein 98.6 3.1E-07 1.1E-11 89.6 14.0 154 298-453 4-176 (203)
164 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 1.7E-08 5.7E-13 113.9 5.4 169 300-491 248-417 (457)
165 1elr_A TPR2A-domain of HOP; HO 98.6 4E-07 1.4E-11 81.5 13.1 110 285-395 3-118 (131)
166 2xev_A YBGF; tetratricopeptide 98.6 5.2E-07 1.8E-11 81.3 13.8 107 287-393 3-114 (129)
167 1hxi_A PEX5, peroxisome target 98.6 2.2E-07 7.5E-12 84.3 11.2 87 266-352 31-117 (121)
168 1dce_A Protein (RAB geranylger 98.5 1.8E-06 6.1E-11 99.8 19.0 164 298-465 40-231 (567)
169 3mv2_B Coatomer subunit epsilo 98.5 1.7E-06 5.7E-11 91.5 16.8 184 305-493 85-286 (310)
170 1b89_A Protein (clathrin heavy 98.5 2.7E-07 9.2E-12 101.9 10.4 284 72-448 15-306 (449)
171 3rkv_A Putative peptidylprolyl 98.5 2.6E-07 8.9E-12 87.7 9.0 96 287-383 12-125 (162)
172 3gw4_A Uncharacterized protein 98.5 1.1E-06 3.8E-11 85.6 13.7 136 284-420 24-177 (203)
173 1wao_1 Serine/threonine protei 98.5 1.3E-07 4.4E-12 107.2 7.6 114 265-379 19-134 (477)
174 2xev_A YBGF; tetratricopeptide 98.5 2.7E-06 9.3E-11 76.5 14.4 95 267-362 17-117 (129)
175 1elr_A TPR2A-domain of HOP; HO 98.5 1.2E-06 4.1E-11 78.3 11.9 107 321-430 5-118 (131)
176 2hr2_A Hypothetical protein; a 98.4 1.8E-06 6.1E-11 82.1 13.2 97 286-383 11-130 (159)
177 2kat_A Uncharacterized protein 98.4 1.5E-06 5.2E-11 77.1 12.2 81 271-351 4-84 (115)
178 3u3w_A Transcriptional activat 98.4 2.2E-06 7.5E-11 89.9 15.3 153 267-420 90-267 (293)
179 2qfc_A PLCR protein; TPR, HTH, 98.4 1.8E-05 6E-10 82.9 22.2 152 267-419 90-266 (293)
180 3k9i_A BH0479 protein; putativ 98.4 3.9E-07 1.3E-11 81.6 8.1 85 269-353 7-94 (117)
181 1wao_1 Serine/threonine protei 98.4 5.5E-07 1.9E-11 102.0 11.0 164 287-452 7-196 (477)
182 3rkv_A Putative peptidylprolyl 98.4 1.2E-06 4.2E-11 83.0 11.6 101 266-366 25-143 (162)
183 2kck_A TPR repeat; tetratricop 98.4 1.5E-06 5.2E-11 75.3 11.0 99 356-455 7-108 (112)
184 1zu2_A Mitochondrial import re 98.4 9.1E-07 3.1E-11 83.9 9.5 87 266-352 16-123 (158)
185 1ihg_A Cyclophilin 40; ppiase 98.4 2.2E-06 7.6E-11 93.6 14.1 139 286-444 223-361 (370)
186 4b4t_Q 26S proteasome regulato 98.4 9.6E-06 3.3E-10 89.2 19.2 185 267-452 19-244 (434)
187 3ro3_A PINS homolog, G-protein 98.4 2.2E-06 7.6E-11 79.2 11.8 98 286-383 9-117 (164)
188 2if4_A ATFKBP42; FKBP-like, al 98.4 6.4E-07 2.2E-11 96.6 9.2 118 266-384 193-328 (338)
189 4gcn_A Protein STI-1; structur 98.4 4.7E-06 1.6E-10 76.0 13.7 60 323-383 11-70 (127)
190 1ihg_A Cyclophilin 40; ppiase 98.3 5E-06 1.7E-10 90.8 14.8 138 322-481 225-362 (370)
191 3k9i_A BH0479 protein; putativ 98.3 8.9E-07 3E-11 79.2 6.7 85 299-384 3-90 (117)
192 2hr2_A Hypothetical protein; a 98.3 3.9E-06 1.3E-10 79.7 10.5 87 266-352 25-134 (159)
193 1na3_A Designed protein CTPR2; 98.2 7.9E-06 2.7E-10 68.4 11.2 84 284-368 7-90 (91)
194 3ro3_A PINS homolog, G-protein 98.2 6.9E-06 2.4E-10 75.8 11.3 132 321-453 10-158 (164)
195 1zu2_A Mitochondrial import re 98.2 4.9E-06 1.7E-10 78.9 10.0 87 298-385 14-121 (158)
196 2l6j_A TPR repeat-containing p 98.2 1.9E-06 6.7E-11 75.1 6.6 94 285-378 3-101 (111)
197 4b4t_Q 26S proteasome regulato 98.2 4.8E-05 1.6E-09 83.5 19.5 154 267-421 70-247 (434)
198 3u64_A Protein TP_0956; tetrat 98.2 0.00023 7.9E-09 73.7 22.5 108 245-352 154-272 (301)
199 3ma5_A Tetratricopeptide repea 98.1 1.1E-05 3.8E-10 70.0 9.6 71 281-351 2-72 (100)
200 3esl_A Checkpoint serine/threo 98.1 7.6E-05 2.6E-09 72.8 16.1 144 214-368 7-163 (202)
201 2kat_A Uncharacterized protein 98.1 2.2E-05 7.6E-10 69.4 10.7 80 304-384 3-82 (115)
202 4g26_A Pentatricopeptide repea 98.0 0.00053 1.8E-08 77.8 23.9 164 288-452 28-203 (501)
203 4a1g_A Mitotic checkpoint seri 97.9 0.00011 3.8E-09 68.7 13.2 113 244-368 25-149 (152)
204 3u64_A Protein TP_0956; tetrat 97.9 0.001 3.5E-08 68.9 21.6 175 272-455 52-271 (301)
205 2wvi_A Mitotic checkpoint seri 97.9 0.00017 5.8E-09 68.4 13.4 114 245-368 19-144 (164)
206 4aez_C MAD3, mitotic spindle c 97.8 0.00032 1.1E-08 69.5 15.1 133 216-367 52-197 (223)
207 2kc7_A BFR218_protein; tetratr 97.8 6.3E-05 2.1E-09 64.3 8.9 85 290-383 4-89 (99)
208 3ma5_A Tetratricopeptide repea 97.8 0.00017 6E-09 62.3 11.5 69 18-90 2-71 (100)
209 4g26_A Pentatricopeptide repea 97.8 0.0011 3.9E-08 75.1 21.1 166 323-491 29-206 (501)
210 1na3_A Designed protein CTPR2; 97.7 0.00025 8.6E-09 58.9 11.4 77 357-434 11-87 (91)
211 3bee_A Putative YFRE protein; 97.7 0.0002 6.8E-09 61.6 10.4 71 282-352 2-75 (93)
212 2l6j_A TPR repeat-containing p 97.7 3.6E-05 1.2E-09 66.8 5.1 65 358-423 7-71 (111)
213 3esl_A Checkpoint serine/threo 97.6 0.0012 4.1E-08 64.4 15.0 139 37-193 7-163 (202)
214 2kc7_A BFR218_protein; tetratr 97.5 9.8E-05 3.3E-09 63.1 5.9 77 267-351 15-92 (99)
215 1klx_A Cysteine rich protein B 97.5 0.0017 5.7E-08 59.8 14.3 107 269-384 12-126 (138)
216 1klx_A Cysteine rich protein B 97.4 0.0018 6.2E-08 59.6 13.7 110 301-419 10-126 (138)
217 4aez_C MAD3, mitotic spindle c 97.4 0.001 3.5E-08 65.9 12.5 129 37-192 50-197 (223)
218 4a1g_A Mitotic checkpoint seri 97.4 0.00084 2.9E-08 62.7 11.0 128 39-192 7-148 (152)
219 3ly7_A Transcriptional activat 97.4 0.0038 1.3E-07 67.1 17.5 150 277-455 185-341 (372)
220 3n71_A Histone lysine methyltr 97.4 0.0005 1.7E-08 77.7 11.0 104 357-463 353-472 (490)
221 3bee_A Putative YFRE protein; 97.2 0.0014 4.7E-08 56.3 9.5 77 19-100 2-82 (93)
222 3n71_A Histone lysine methyltr 97.2 0.00095 3.3E-08 75.4 10.9 123 367-490 321-465 (490)
223 1pc2_A Mitochondria fission pr 97.2 0.0027 9.3E-08 59.4 11.6 86 267-352 13-103 (152)
224 3ly7_A Transcriptional activat 97.1 0.01 3.5E-07 63.8 16.8 72 418-492 271-342 (372)
225 2wvi_A Mitotic checkpoint seri 97.1 0.007 2.4E-07 57.3 13.5 127 43-194 4-145 (164)
226 1pc2_A Mitochondria fission pr 96.4 0.017 5.8E-07 54.0 10.4 82 303-384 15-100 (152)
227 3qww_A SET and MYND domain-con 96.2 0.019 6.3E-07 63.7 11.3 85 299-383 311-410 (433)
228 2v5f_A Prolyl 4-hydroxylase su 96.2 0.042 1.5E-06 47.5 11.2 69 285-353 4-79 (104)
229 2v5f_A Prolyl 4-hydroxylase su 95.9 0.077 2.6E-06 45.8 11.6 69 358-427 8-83 (104)
230 3qww_A SET and MYND domain-con 95.7 0.017 6E-07 63.9 8.1 84 266-349 312-411 (433)
231 3qwp_A SET and MYND domain-con 95.3 0.086 2.9E-06 58.3 12.0 84 299-382 300-398 (429)
232 3qwp_A SET and MYND domain-con 95.0 0.18 6.1E-06 55.7 13.2 87 332-419 299-400 (429)
233 1nzn_A CGI-135 protein, fissio 94.7 0.25 8.6E-06 44.4 10.8 84 269-352 18-106 (126)
234 1nzn_A CGI-135 protein, fissio 92.1 1 3.6E-05 40.4 10.4 84 371-455 17-105 (126)
235 3spa_A Mtrpol, DNA-directed RN 89.8 2.8 9.4E-05 50.7 14.0 97 288-384 129-230 (1134)
236 3ffl_A Anaphase-promoting comp 89.4 1.5 5.2E-05 41.2 9.2 81 266-346 34-148 (167)
237 3o48_A Mitochondria fission 1 89.2 6.5 0.00022 35.5 12.8 80 272-352 27-110 (134)
238 3mkq_A Coatomer beta'-subunit; 89.1 4.9 0.00017 47.1 16.0 161 290-491 633-794 (814)
239 3mkq_A Coatomer beta'-subunit; 88.4 8.4 0.00029 45.0 17.3 76 296-385 662-737 (814)
240 3mkq_B Coatomer subunit alpha; 88.3 14 0.00046 35.2 15.2 120 331-480 16-135 (177)
241 3o48_A Mitochondria fission 1 87.4 1.7 5.9E-05 39.2 7.8 85 370-455 22-109 (134)
242 3txn_A 26S proteasome regulato 87.2 18 0.00061 39.0 17.3 25 358-382 142-166 (394)
243 3mkq_B Coatomer subunit alpha; 86.7 20 0.0007 33.9 15.4 108 284-414 6-113 (177)
244 1y8m_A FIS1; mitochondria, unk 86.6 2.6 8.9E-05 38.6 8.6 85 370-455 21-108 (144)
245 1zbp_A Hypothetical protein VP 86.3 8.8 0.0003 39.0 13.2 57 296-352 7-63 (273)
246 1y8m_A FIS1; mitochondria, unk 85.4 13 0.00043 34.0 12.5 81 271-352 25-109 (144)
247 4gns_B Protein CSD3, chitin bi 84.1 4 0.00014 47.9 11.0 55 396-455 344-398 (754)
248 4gns_B Protein CSD3, chitin bi 83.3 2.2 7.6E-05 50.1 8.3 60 287-346 338-397 (754)
249 3txn_A 26S proteasome regulato 82.7 19 0.00066 38.7 15.0 166 289-455 22-212 (394)
250 3spa_A Mtrpol, DNA-directed RN 82.5 11 0.00037 45.7 13.7 97 320-419 127-230 (1134)
251 3ffl_A Anaphase-promoting comp 80.7 14 0.00048 34.6 11.2 59 291-349 25-92 (167)
252 2ff4_A Probable regulatory pro 74.9 12 0.00042 40.1 10.6 51 34-88 183-233 (388)
253 4b4t_S RPN3, 26S proteasome re 71.3 57 0.002 36.3 14.7 193 293-493 143-374 (523)
254 2ff4_A Probable regulatory pro 70.5 12 0.00041 40.2 9.1 58 325-383 176-233 (388)
255 4b4t_R RPN7, 26S proteasome re 68.8 19 0.00063 39.3 10.3 100 321-421 132-239 (429)
256 4b4t_R RPN7, 26S proteasome re 68.1 10 0.00036 41.3 8.1 100 285-384 130-237 (429)
257 4b4t_P 26S proteasome regulato 63.8 1.7E+02 0.0057 31.8 18.6 168 283-453 53-247 (445)
258 1wy6_A Hypothetical protein ST 54.8 79 0.0027 28.7 9.6 82 266-351 75-156 (172)
259 4fhn_B Nucleoporin NUP120; pro 53.9 3.6E+02 0.012 33.1 19.1 99 281-379 837-962 (1139)
260 4b4t_P 26S proteasome regulato 51.7 90 0.0031 33.9 11.9 97 287-383 138-246 (445)
261 3tj3_C Nuclear pore complex pr 51.2 4.1 0.00014 35.2 0.7 19 733-751 33-51 (114)
262 4b4t_S RPN3, 26S proteasome re 39.3 1.3E+02 0.0044 33.5 10.5 149 327-477 143-328 (523)
263 2ijq_A Hypothetical protein; s 37.5 1.3E+02 0.0043 27.9 8.6 54 330-383 42-103 (161)
264 1zbp_A Hypothetical protein VP 37.1 3.4E+02 0.012 27.3 15.0 58 266-323 11-68 (273)
265 1ya0_A SMG-7 transcript varian 36.0 1.3E+02 0.0046 33.2 10.2 49 301-349 167-215 (497)
266 1ya0_A SMG-7 transcript varian 35.1 2.2E+02 0.0076 31.4 11.8 74 324-398 156-229 (497)
267 1g1e_B SIN3A; four-helix bundl 28.0 1.1E+02 0.0037 25.3 5.8 30 407-436 11-40 (89)
268 1wy6_A Hypothetical protein ST 24.0 4.1E+02 0.014 24.1 14.6 138 296-453 17-154 (172)
269 3ax2_A Mitochondrial import re 23.5 1.6E+02 0.0056 23.3 5.8 34 290-323 21-54 (73)
270 2l9b_B MRNA 3'-END-processing 21.3 1.2E+02 0.004 22.3 4.0 38 630-667 6-47 (53)
271 1un0_C Nucleoporin NUP2; nucle 20.6 42 0.0014 24.7 1.6 22 732-753 28-49 (51)
272 2wpv_A GET4, UPF0363 protein Y 20.3 7E+02 0.024 25.5 19.1 64 269-333 14-86 (312)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=1.9e-67 Score=619.86 Aligned_cols=504 Identities=23% Similarity=0.421 Sum_probs=454.0
Q ss_pred cchhccccCCCCCHHHHHHHHHHhcc-CChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHH
Q 004093 10 SEENITGVADKYNVETAEILANSALH-LPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNN---DDATKQLFSR 85 (774)
Q Consensus 10 ~e~~i~~~~nP~d~~~W~~l~~~~~~-~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n---~~~a~~ifeR 85 (774)
.|++|. .||+|+++|..|++.++. +.++++|.+||+++..||.+ ..+|..|+++|++.++ ++.++++|+|
T Consensus 55 lE~~l~--~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~----~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 55 LNDMIE--EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLM----ANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHH--HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 466777 999999999999997654 58999999999999999999 9999999999999999 9999999999
Q ss_pred HHccC---CCHHHHHHHHHHHHHHhhcc-C-CccHHHHHHHHHHHHHhcCC-CCCChHhHHHHHHHHhhCCcCchHHHhH
Q 004093 86 CLLIC---LQVPLWRCYIRFIRKVYEKK-G-TEGQEETRKAFDFMLSHVGS-DISSGPIWLEYITFLKSLPALNAQEESQ 159 (774)
Q Consensus 86 aL~~~---p~~~lW~~Yl~~~~~~~~~~-~-~~~~e~ar~~ye~aL~~vg~-d~~s~~iW~~yi~fe~~~~~~~~~~~~~ 159 (774)
||..+ +++++|..|++|+.+.++.. + .++.+.++++|++|+..+|. |+.++.||..|++|+++......+++++
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 99999 99999999999999876542 1 34578899999999999999 9999999999999999887777788888
Q ss_pred HHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-------
Q 004093 160 RMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLA------- 232 (774)
Q Consensus 160 ~~~~ar~vYqral~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~------- 232 (774)
+++.+|++|+|+|.+|+.+++.+|..|..||+.++..++++++.+..+.|+.|+.+++++..+++.|.+....
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 9999999999999999999999999999999999888999999999999999999999999998888754221
Q ss_pred --CCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH-HHH
Q 004093 233 --VPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAI-KVF 309 (774)
Q Consensus 233 --~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~-~v~ 309 (774)
+|+. ...+..++.+|++||.||+.++..++.....+|+..+|++||..+|+++++|+.|+.|+...|+.++|+ ++|
T Consensus 289 ~~~p~~-~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKP-NEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCT-TCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCC-chhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 2222 223567899999999999999888876667889999999999999999999999999999999999996 999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC-----------CC----------CcHHHHHHHHHHHHHh
Q 004093 310 QRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS-----------VN----------TTALAHIQFIRFLRRT 368 (774)
Q Consensus 310 erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~-----------~~----------~~~~~~~~~a~~~~r~ 368 (774)
++|+..||.+..||+.|+.+++..|++++|+++|++++... |. ..+.+|+.|++|++|.
T Consensus 368 ~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 368 KLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999742 21 1356999999999999
Q ss_pred cCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 004093 369 EGVEAARKYFLDARKS-PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALF 447 (774)
Q Consensus 369 ~~~~~Ar~if~~al~~-~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lf 447 (774)
+++++||++|.+|++. +.+.+++|+.+|.+|+++.++.+.|++||++|++.+|+++.+|..|++|+...|+.++||.+|
T Consensus 448 ~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lf 527 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLF 527 (679)
T ss_dssp HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999998 778899999999999998667999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC-chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccccccCCcchhhhhhhhHhhhcccCCCCCCChhhhh
Q 004093 448 ERALSSLP-PEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLD 526 (774)
Q Consensus 448 EraL~~~p-~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk~~~d~~~a~~~~~~~~~~ry~f~d~~p~~~~~l~ 526 (774)
|+|+..++ +++...+|..|++||..+|+++++.++++|+.+++|+. +.+..+++||++++..||...+|.
T Consensus 528 eral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~---------~~~~~f~~ry~~~~~~~i~~~~l~ 598 (679)
T 4e6h_A 528 ESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV---------NKLEEFTNKYKVLDVNYLQRLELD 598 (679)
T ss_dssp HHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC---------CHHHHHHHHTCBTTBCHHHHHTCT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------cHHHHHHHHhcCCcchhHHHHHhh
Confidence 99999887 45788999999999999999999999999999999932 245579999999999999888887
Q ss_pred hhH
Q 004093 527 HLV 529 (774)
Q Consensus 527 ~l~ 529 (774)
++.
T Consensus 599 ~~~ 601 (679)
T 4e6h_A 599 YMV 601 (679)
T ss_dssp TC-
T ss_pred hcc
Confidence 775
No 2
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=4.9e-61 Score=555.18 Aligned_cols=509 Identities=39% Similarity=0.721 Sum_probs=456.4
Q ss_pred cchhccccCCCCCHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004093 10 SEENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLI 89 (774)
Q Consensus 10 ~e~~i~~~~nP~d~~~W~~l~~~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~ 89 (774)
.|++|+ .||+|+++|..+++..+.+++++|+.+|++++..+|.+ ..+|..|++++.+.|++++|+++|+|||..
T Consensus 2 le~al~--~~P~~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~----~~~w~~~~~~~~~~~~~~~a~~~~~ral~~ 75 (530)
T 2ooe_A 2 AEKKLE--ENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSS----GRFWKLYIEAEIKAKNYDKVEKLFQRCLMK 75 (530)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred hhhHhh--hCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 366788 99999999999999877789999999999999999999 999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHH
Q 004093 90 CLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQ 169 (774)
Q Consensus 90 ~p~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYq 169 (774)
+|++++|..|+.|+.+.... .....+.++++|++++..+|.|+.+..+|..|+.|+...+..+.+.++++++.|+++|+
T Consensus 76 ~p~~~lw~~~~~~~~~~~~~-~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~ 154 (530)
T 2ooe_A 76 VLHIDLWKCYLSYVRETKGK-LPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ 154 (530)
T ss_dssp CCCHHHHHHHHHHHHHHTTT-STTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHccc-hhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHH
Confidence 99999999999998765321 13456778899999999999999999999999999987655555666899999999999
Q ss_pred HHHcccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHH
Q 004093 170 RAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWK 249 (774)
Q Consensus 170 ral~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~ 249 (774)
+++.+|..+.+.+|..|..|++.++..++++++.+..+.|+.|+.+++++..+.+.+.+....++|..+..+..+..+|.
T Consensus 155 ~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~ 234 (530)
T 2ooe_A 155 RGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234 (530)
T ss_dssp HHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred HHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 99999998889999999999999988888998888889999999999999999999887666677765444456788999
Q ss_pred HHHHHHhcCCCCCCc-hhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH
Q 004093 250 RLLTFEKGNPQRIDT-ASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAK-------SGSID-------AAIKVFQRALK 314 (774)
Q Consensus 250 ~yi~~Ek~n~~~~d~-~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~-------~g~~e-------~A~~v~erAl~ 314 (774)
.|+.||+.++..++. ....+++..+|++|+..+|+++++|+.|+.++.+ .|+++ +|+++|++|++
T Consensus 235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 999999988765532 2345688899999999999999999999999987 68876 89999999998
Q ss_pred -hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHH
Q 004093 315 -ALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYV 393 (774)
Q Consensus 315 -~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i 393 (774)
.+|++..+|+.++.+++..|++++|+.+|+++++..|.....+|+.|+.++.+.|++++|+++|++|++.++..+++|+
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~ 394 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV 394 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHH
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHH
Confidence 7999999999999999999999999999999999988744579999999999999999999999999999888899999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--chhHHHHHHHHHHHHH
Q 004093 394 AYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP--PEESIEVWKRFTQFEQ 471 (774)
Q Consensus 394 ~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p--~e~~~~lw~~~~~fE~ 471 (774)
..+.+++...|+++.|+++|+++++.+|+++.+|..|++++...|+.++||.+|++++...| ++....+|..|+.||.
T Consensus 395 ~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 395 TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 98888876679999999999999999999999999999999999999999999999999754 4566889999999999
Q ss_pred HhCCHHHHHHHHHHHHHHccccccCCcchhhhhhhhHhhhcccCCCCCCChhhhhhhHHH
Q 004093 472 MYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQ 531 (774)
Q Consensus 472 ~~Gd~~~i~kv~~R~~~~~pk~~~d~~~a~~~~~~~~~~ry~f~d~~p~~~~~l~~l~~~ 531 (774)
.+|+.+++.++.+|+.+.+|++.+|. ....+++||+|+|++||++++|++|+|+
T Consensus 475 ~~G~~~~~~~~~~r~~~~~p~~~~~~------~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 528 (530)
T 2ooe_A 475 NIGDLASILKVEKRRFTAFREEYEGK------ETALLVDRYKFMDLYPCSASELKALGYK 528 (530)
T ss_dssp HSSCHHHHHHHHHHHHHHTHHHHTTC------HHHHHGGGTCBTTBCSSCHHHHHTTTCC
T ss_pred HcCCHHHHHHHHHHHHHHCchhccCc------hHHHHHHHHHhcccCCCCHHHHHhcCCC
Confidence 99999999999999999999665444 2346999999999999999999999986
No 3
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=100.00 E-value=9.9e-55 Score=497.70 Aligned_cols=446 Identities=21% Similarity=0.377 Sum_probs=366.2
Q ss_pred ChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhccCCccHH
Q 004093 37 PVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQE 116 (774)
Q Consensus 37 ~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~~~lW~~Yl~~~~~~~~~~~~~~~e 116 (774)
+++.||++|++++..||. ++++.|++||+|||..+|++++|..|++|+.+.++ ..+
T Consensus 10 ~i~~aR~vyer~l~~~P~-------------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~-----~~~ 65 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYMS-------------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQ-----KKF 65 (493)
T ss_dssp --CCHHHHHHHHHHHHHT-------------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC---------
T ss_pred chHHHHHHHHHHHHHCCC-------------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCc-----hHH
Confidence 599999999999999996 46999999999999999999999999999998754 357
Q ss_pred HHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHhhHH
Q 004093 117 ETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQ 196 (774)
Q Consensus 117 ~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~~~e~l~~~y~~fE~~~~~~ 196 (774)
.++++|++|+..+|.|+.++.+|.+|++|++... .++++++.+|++|+|||.+|+.+.+.+|..|..||..++..
T Consensus 66 ~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~-----~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~ 140 (493)
T 2uy1_A 66 KLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIE-----DEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKI 140 (493)
T ss_dssp CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCS-----SHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhch-----hhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999999987542 24688999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHH
Q 004093 197 LAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYE 276 (774)
Q Consensus 197 lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~ye 276 (774)
++++++.+..+.|+.|+.+|++........ ++.+|..|+.||++++.+++.....+|+..+|+
T Consensus 141 ~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~-----------------s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye 203 (493)
T 2uy1_A 141 TGKKIVGDTLPIFQSSFQRYQQIQPLIRGW-----------------SVKNAARLIDLEMENGMKLGGRPHESRMHFIHN 203 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhhc-----------------cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHH
Confidence 999999999999999999988765443221 136999999999998877765456788999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC------
Q 004093 277 QCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS------ 350 (774)
Q Consensus 277 raL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~------ 350 (774)
+||..+|+++++|+.|+.|+.+.|+.++|+++|++|+.. |.+..+|+.|+.+++.. + ....++++.+...
T Consensus 204 ~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~-~--~~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 204 YILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEE-A--VYGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCT-H--HHHHHHHHTC---------
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchh-H--HHHHHHHHHHhhccchhhh
Confidence 999999999999999999999999999999999999999 99999999999874311 1 1223333321111
Q ss_pred --CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHH
Q 004093 351 --VNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL 428 (774)
Q Consensus 351 --~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~ 428 (774)
+.....+|+.|++|+++.+++++||++|++| +.+.++.++|+.+|.+|+.+.++.+.|++||+.|++.+|+++++|.
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~ 358 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKE 358 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHH
Confidence 1113479999999999999999999999999 7677789999999999998866899999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-cccCCcchhh-----
Q 004093 429 EYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR-TGEEGASALE----- 502 (774)
Q Consensus 429 ~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk-~~~d~~~a~~----- 502 (774)
.|++|+...|+.++||.+|+++. ++..+|..|++||..+||.+++.++++|+.+.+.. +.+|..+.++
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~f 432 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQM 432 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccccCCcccccccHHHH
Confidence 99999999999999999999983 36899999999999999999999999999988762 2233322222
Q ss_pred ----hhhhhHhhhcccCCCCCCChh-h-------hhhhHHHHHHHHhhh
Q 004093 503 ----DSLQDVVSRYSFMDLWPCSSK-D-------LDHLVRQEWLVKNIN 539 (774)
Q Consensus 503 ----~~~~~~~~ry~f~d~~p~~~~-~-------l~~l~~~~~~~~~~~ 539 (774)
-.+.++++||+|+|++||+++ + |++|+.++|..+|++
T Consensus 433 e~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (493)
T 2uy1_A 433 EGILGRYHCFLDSFNFLDLKIRDNSRLLDEFMENLPKISQQNNVLSNLR 481 (493)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCCTTCCCTTTTC----------------
T ss_pred HHHhhhHHHHHHHhhhhccccCCccchHHHHHHhccccchhHHHHHhcC
Confidence 345789999999999999965 6 888888887666654
No 4
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=3.7e-34 Score=307.05 Aligned_cols=285 Identities=43% Similarity=0.739 Sum_probs=258.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCc-hhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-------cCCH-------HHH
Q 004093 241 EEQQWIAWKRLLTFEKGNPQRIDT-ASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAK-------SGSI-------DAA 305 (774)
Q Consensus 241 ~~~q~~lW~~yi~~Ek~n~~~~d~-~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~-------~g~~-------e~A 305 (774)
+..+..+|++||.||+.++..++. ....+++..+|++++..+|+++++|+.|+.++.. .|++ ++|
T Consensus 4 ~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A 83 (308)
T 2ond_A 4 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 83 (308)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHH
Confidence 456788999999999998877744 2345889999999999999999999999999874 4775 899
Q ss_pred HHHHHHHHH-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 004093 306 IKVFQRALK-ALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS 384 (774)
Q Consensus 306 ~~v~erAl~-~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~ 384 (774)
+.+|++|+. ..|++..+|+.|+.++...|++++|+.+|+++++..|.....+|+.|+.++.+.|++++|+.+|++|++.
T Consensus 84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 84 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999999 6899999999999999999999999999999999988744349999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCchhHHHH
Q 004093 385 PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSS--LPPEESIEV 462 (774)
Q Consensus 385 ~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~--~p~e~~~~l 462 (774)
.+..+++|+..+.+++...|+++.|+++|+++++.+|+++.+|..|++++..+|++++|+.+|++++.. +++++...+
T Consensus 164 ~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 778899999999998775699999999999999999999999999999999999999999999999996 466667899
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccccccCCcchhhhhhhhHhhhcccCCCCCCChhhhhhhHHH
Q 004093 463 WKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQ 531 (774)
Q Consensus 463 w~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk~~~d~~~a~~~~~~~~~~ry~f~d~~p~~~~~l~~l~~~ 531 (774)
|..|+.||..+|+.+.+.++++|+.+.+|+..++. ....+.+||++++++||++..|++|||+
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~------~~~~~~~r~~~l~~~P~~~~~ln~lgY~ 306 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAFREEYEGK------ETALLVDRYKFMDLYPCSASELKALGYK 306 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSC------HHHHHHTTTCBTTBCSSCHHHHHTTTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccc------hHHHHHHHHHhcccCCCCHHHHHhcCCC
Confidence 99999999999999999999999999999654332 2246899999999999999999999996
No 5
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=7.7e-32 Score=317.21 Aligned_cols=420 Identities=13% Similarity=0.156 Sum_probs=322.0
Q ss_pred hhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHhhccCCccHH
Q 004093 38 VAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQE 116 (774)
Q Consensus 38 i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p-~~~lW~~Yl~~~~~~~~~~~~~~~e 116 (774)
-++.+..||+.|..+|.+ ...|..|++++.+.++++.++.+|+|+|..+| +..+|..|+.++.+.++ ....+
T Consensus 48 ~~d~i~~lE~~l~~np~d----~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~---~~~~~ 120 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTD----IFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKME---ELDAA 120 (679)
T ss_dssp CSCHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC-----CCCHH
T ss_pred CHHHHHHHHHHHHHCcCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCC---cchHH
Confidence 455667889999999999 99999999999999999999999999999986 57999999999876433 12378
Q ss_pred HHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHc-ccC--ccHHHHHHHHHHHHHHh
Q 004093 117 ETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVV-TPT--HHVEQLWKDYENFENSV 193 (774)
Q Consensus 117 ~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~-~P~--~~~e~l~~~y~~fE~~~ 193 (774)
.++++|++|+..+.. +.+..+|..|++|+........ ...+..+.+|++|++|+. +.. ...+.+|..|..|+...
T Consensus 121 ~v~~lfeRal~~~~~-~~sv~LW~~Yl~f~~~~~~~~~-~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~ 198 (679)
T 4e6h_A 121 VIEPVLARCLSKELG-NNDLSLWLSYITYVRKKNDIIT-GGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHW 198 (679)
T ss_dssp HHHHHHHHHTCSSSC-CCCHHHHHHHHHHHHHHSCSTT-THHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHhccccc-ccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhc
Confidence 999999998886632 2578899999999876322110 011234678999999995 333 23368999999998753
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCch------hc
Q 004093 194 SRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTA------SS 267 (774)
Q Consensus 194 ~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~------~~ 267 (774)
.... . . +.+.+++.+|.+|.+ +| .+|... ...+|..|..||+.....+... ..
T Consensus 199 ~~~~--~-~-eeq~~~~~~R~iy~r------aL-----~iP~~~------~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~ 257 (679)
T 4e6h_A 199 KPVN--K-F-EEQQRVQYIRKLYKT------LL-----CQPMDC------LESMWQRYTQWEQDVNQLTARRHIGELSAQ 257 (679)
T ss_dssp CCCS--H-H-HHHHHHHHHHHHHHH------HT-----TSCCSS------HHHHHHHHHHHHHHHCTTTHHHHHHHHHHH
T ss_pred cccC--c-H-HHHhHHHHHHHHHHH------HH-----hCccHH------HHHHHHHHHHHHHhcCcchHHHHHHHhhHH
Confidence 2100 0 0 113346677777664 33 243222 2369999999998621111100 01
Q ss_pred hHHHHHHHHHHH------Hh-cCCC-------------------HHHHHHHHHHHHHcCC-------HHHHHHHHHHHHH
Q 004093 268 NKRIIFTYEQCL------MY-LYHY-------------------PDIWYDYATWNAKSGS-------IDAAIKVFQRALK 314 (774)
Q Consensus 268 ~~r~~~~yeraL------~~-~p~~-------------------~~iW~~ya~~l~~~g~-------~e~A~~v~erAl~ 314 (774)
..++...|...- .. .|.. ..+|..|+.|+..++. ...++.+|++|+.
T Consensus 258 y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~ 337 (679)
T 4e6h_A 258 YMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ 337 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH
Confidence 112223333211 10 1221 3799999999887541 3456789999999
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHH-HHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC---------
Q 004093 315 ALPDSEMLRYAFAELEESRGAIAAAK-KLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS--------- 384 (774)
Q Consensus 315 ~~P~~~~l~~~~a~l~e~~g~~e~A~-~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~--------- 384 (774)
.+|....+|+.|+.+++..|+.++|+ ++|++++...|. ...+|+.|+.++.+.+++++||++|+++++.
T Consensus 338 ~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~-s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~ 416 (679)
T 4e6h_A 338 HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN-SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALM 416 (679)
T ss_dssp HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999996 999999999886 5789999999999999999999999999874
Q ss_pred ---CC----------CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcC-ChhHHHHHHHH
Q 004093 385 ---PN----------FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR-FMHEPAYILEYADFLSRLN-DDRNIRALFER 449 (774)
Q Consensus 385 ---~~----------~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~-~p~~~~l~~~ya~~l~~~g-d~~~Ar~lfEr 449 (774)
|. ....+|+.++.++.+. ++.+.||++|++|++. .+....+|..++.++.+.+ +.+.||.+|++
T Consensus 417 ~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~-~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~ 495 (679)
T 4e6h_A 417 EDDPTNESAINQLKSKLTYVYCVYMNTMKRI-QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLEL 495 (679)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred hccCcchhhhhhhccchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 21 1356899999999886 8999999999999998 4455788889999998875 58999999999
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 450 ALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 450 aL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
+|+.+| +...+|..|++||...|+.+.+..+++|+.+..+
T Consensus 496 ~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 496 GLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 999988 5678999999999999999999999999999887
No 6
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=5.4e-28 Score=278.71 Aligned_cols=411 Identities=13% Similarity=0.156 Sum_probs=306.6
Q ss_pred chhccccCCCCCHHHHHHHHHH-hccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHH-HcCCHHHHH----HHHH
Q 004093 11 EENITGVADKYNVETAEILANS-ALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYM-AVNNDDATK----QLFS 84 (774)
Q Consensus 11 e~~i~~~~nP~d~~~W~~l~~~-~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~-~~~n~~~a~----~ife 84 (774)
++.++ .+|.+...|..++.. .+.+++++|+.+|+|++..+| + .++|..|+.+.. ..++++.|+ .+|+
T Consensus 36 e~al~--~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~----~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~ 108 (530)
T 2ooe_A 36 ERLVA--QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-H----IDLWKCYLSYVRETKGKLPSYKEKMAQAYD 108 (530)
T ss_dssp HHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-C----HHHHHHHHHHHHHHTTTSTTHHHHHHHHHH
T ss_pred HHHHH--HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C----hHHHHHHHHHHHHHccchhhHHHHHHHHHH
Confidence 45566 899999999999995 456799999999999999999 6 789999998765 457766655 4999
Q ss_pred HHHccC----CCHHHHHHHHHHHHHHhhcc---CCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCch---
Q 004093 85 RCLLIC----LQVPLWRCYIRFIRKVYEKK---GTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNA--- 154 (774)
Q Consensus 85 RaL~~~----p~~~lW~~Yl~~~~~~~~~~---~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~--- 154 (774)
+++... .+..+|..|+.|+.+..... .....+.++++|++++. ++. .....+|..|..|++.......
T Consensus 109 ~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~-~~~~~~~~~~~~~e~~~~~~~~~~~ 186 (530)
T 2ooe_A 109 FALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPM-INIEQLWRDYNKYEEGINIHLAKKM 186 (530)
T ss_dssp HHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCC-TTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chh-hhHHHHHHHHHHHHHhhchhHHHHH
Confidence 998753 46799999999987611000 01237899999999987 432 2235799999999764321000
Q ss_pred -HHHhHHHHHHHHHHHH------HHc-----ccCc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004093 155 -QEESQRMIAIRKAYQR------AVV-----TPTH------HVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVY 216 (774)
Q Consensus 155 -~~~~~~~~~ar~vYqr------al~-----~P~~------~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~ 216 (774)
.+..+++..|+.+|+. ++. +|.. ....+|..|..||......+.. ......++..
T Consensus 187 l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~-----~~~~~~~a~~-- 259 (530)
T 2ooe_A 187 IEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED-----QTLITKRVMF-- 259 (530)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC-----SHHHHHHHHH--
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc-----chhHHHHHHH--
Confidence 0124567788888876 553 2322 1247899998887641100000 0000011222
Q ss_pred HHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcC------CCCCCc-hhchHHHHHHHHHHHH-hcCCCHHH
Q 004093 217 RERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGN------PQRIDT-ASSNKRIIFTYEQCLM-YLYHYPDI 288 (774)
Q Consensus 217 k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n------~~~~d~-~~~~~r~~~~yeraL~-~~p~~~~i 288 (774)
.|+++|.. .|.. ..+|..|..+...+ ..+++. ....+.++.+|++++. .+|.+..+
T Consensus 260 ----~y~~al~~-----~p~~-------~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 260 ----AYEQCLLV-----LGHH-------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp ----HHHHHHHH-----HTTC-------HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred ----HHHHHHHh-----CCCC-------HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 24444432 1322 36999999887531 111110 0002377899999997 79999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH-H
Q 004093 289 WYDYATWNAKSGSIDAAIKVFQRALKALPDSE-MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL-R 366 (774)
Q Consensus 289 W~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~-~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~-~ 366 (774)
|+.|+.++.+.|++++|+++|+++++..|.+. .+|..|+.++.+.|++++|+.+|+++++..+. ...+|...+.++ .
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHH
Confidence 99999999999999999999999999999885 69999999999999999999999999998775 345555555443 3
Q ss_pred HhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHhcCChhH
Q 004093 367 RTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP----AYILEYADFLSRLNDDRN 442 (774)
Q Consensus 367 r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~----~l~~~ya~~l~~~gd~~~ 442 (774)
..|+.++|+.+|+++++..+....+|..++.++... |+.++|+.+|++++...|.++ .+|..|++|+...|+.+.
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~-g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL-NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT-TCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhC-CCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 589999999999999997777799999999998875 999999999999999876554 499999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 004093 443 IRALFERALSSLP 455 (774)
Q Consensus 443 Ar~lfEraL~~~p 455 (774)
+..++.++++.+|
T Consensus 482 ~~~~~~r~~~~~p 494 (530)
T 2ooe_A 482 ILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHCc
Confidence 9999999999887
No 7
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.96 E-value=2.3e-27 Score=271.06 Aligned_cols=409 Identities=11% Similarity=0.039 Sum_probs=294.2
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHccC----CCHHHHHH
Q 004093 24 ETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNN-DDATKQLFSRCLLIC----LQVPLWRC 98 (774)
Q Consensus 24 ~~W~~l~~~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n-~~~a~~ifeRaL~~~----p~~~lW~~ 98 (774)
..|...+..+-.+++++++.+|+|++...| + .++|..|+.++.+.++ .+.++.+|++++... .+..+|..
T Consensus 16 ~vyer~l~~~P~~~~e~~~~iferal~~~p-s----~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 16 AIMEHARRLYMSKDYRSLESLFGRCLKKSY-N----LDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-C----HHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHhccCC-C----HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 345555555555789999999999999999 6 7899999999999874 577899999999853 57899999
Q ss_pred HHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCch----HHHhHHHHHHHHHHHHHHcc
Q 004093 99 YIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNA----QEESQRMIAIRKAYQRAVVT 174 (774)
Q Consensus 99 Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~----~~~~~~~~~ar~vYqral~~ 174 (774)
|++|+..... .....+.+|++|++||. ++.+ +...+|..|..|+......+. .+....+..+|.+|+.+...
T Consensus 91 Yi~f~~~~~~--~~~~~~~vR~iy~rAL~-~P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~ 166 (493)
T 2uy1_A 91 YIEEEGKIED--EQTRIEKIRNGYMRALQ-TPMG-SLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPL 166 (493)
T ss_dssp HHHHTSSCSS--HHHHHHHHHHHHHHHHT-SCCT-THHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchh--hhHHHHHHHHHHHHHHh-Chhh-hHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999753100 01237889999999998 5442 346799999999976432111 11224456778888888753
Q ss_pred -cCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHH
Q 004093 175 -PTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLT 253 (774)
Q Consensus 175 -P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~ 253 (774)
+... ..+|..|..||......+... ....+.+. .|+++|.. . |.. ..+|..|+.
T Consensus 167 ~~~~s-~~~W~~y~~~E~~~~~~~~~~------~~~~Rv~~------~ye~al~~----~-p~~-------~~lW~~ya~ 221 (493)
T 2uy1_A 167 IRGWS-VKNAARLIDLEMENGMKLGGR------PHESRMHF------IHNYILDS----F-YYA-------EEVYFFYSE 221 (493)
T ss_dssp HHTCS-HHHHHHHHHHHHTCTTCCCHH------HHHHHHHH------HHHHHHHH----T-TTC-------HHHHHHHHH
T ss_pred Hhhcc-HHHHHHHHHHHhcCCccCcch------hhHHHHHH------HHHHHHHc----C-CCC-------HHHHHHHHH
Confidence 2222 258999999987521000000 00111222 34445442 1 221 359999999
Q ss_pred HHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCCCCHHHHH
Q 004093 254 FEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRAL---------KALPDSEMLRY 324 (774)
Q Consensus 254 ~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl---------~~~P~~~~l~~ 324 (774)
|+... +..+++..+|++|+.. |.+..+|+.|+.++.. .+. ...++++.+ ...+....+|.
T Consensus 222 ~~~~~-------~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~-~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~lw~ 290 (493)
T 2uy1_A 222 YLIGI-------GQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDE-EAV--YGDLKRKYSMGEAESAEKVFSKELDLLRI 290 (493)
T ss_dssp HHHHT-------TCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTC-THH--HHHHHHHTC----------CHHHHHHHHH
T ss_pred HHHHc-------CCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcch-hHH--HHHHHHHHHhhccchhhhhcccccHHHHH
Confidence 98764 3457788999999999 9999999999887421 111 111222110 00112357899
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc-CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 004093 325 AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE-GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQD 403 (774)
Q Consensus 325 ~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~-~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~ 403 (774)
.|+.++++.++++.|+.+|+++ ...+ ....+|+.++.++.+.+ +.+.||.+|+++++..+.....|+.++.+|...
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A-~~~~-~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~- 367 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIEL-GNEG-VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRI- 367 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH-TTSC-CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCHHHHHHHHHHh-hCCC-CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-
Confidence 9999999999999999999999 4333 34679999999998877 599999999999986666688899999988886
Q ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC---chhHHHHHHHHHHHHHHhCCHHHHH
Q 004093 404 KDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP---PEESIEVWKRFTQFEQMYGDLDSTL 480 (774)
Q Consensus 404 gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p---~e~~~~lw~~~~~fE~~~Gd~~~i~ 480 (774)
|+.+.||.+|+++ .....+|..|++|+...|+.+.+|.++++++..+. .++...+.+.|++||..+|+++++.
T Consensus 368 ~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~ 443 (493)
T 2uy1_A 368 GDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFL 443 (493)
T ss_dssp TCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHH
Confidence 9999999999998 35689999999999999999999999999997443 1344566788999999999887776
Q ss_pred HHHH
Q 004093 481 KVEQ 484 (774)
Q Consensus 481 kv~~ 484 (774)
+-++
T Consensus 444 ~~~~ 447 (493)
T 2uy1_A 444 DSFN 447 (493)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 5443
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=2.8e-23 Score=228.26 Aligned_cols=376 Identities=14% Similarity=0.096 Sum_probs=282.1
Q ss_pred hccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHhhccC
Q 004093 33 ALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKG 111 (774)
Q Consensus 33 ~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p-~~~lW~~Yl~~~~~~~~~~~ 111 (774)
++.+++++|...|++++...|++ ...|..++.++...+++++|...+++++...| +...|...+....+.++
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~--- 82 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQEPDN----TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ--- 82 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC---
Confidence 44567788888888888888888 77787777777777888888888888777765 45777777776666554
Q ss_pred CccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcc-cCccHHHHHHHHHHHH
Q 004093 112 TEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHVEQLWKDYENFE 190 (774)
Q Consensus 112 ~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~-P~~~~e~l~~~y~~fE 190 (774)
.+.+...|+++++. +|.....|...+.... ..++++.|.+.|++++.. |... ..|.......
T Consensus 83 ---~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~ 145 (388)
T 1w3b_A 83 ---LQEAIEHYRHALRL---KPDFIDGYINLAAALV---------AAGDMEGAVQAYVSALQYNPDLY--CVRSDLGNLL 145 (388)
T ss_dssp ---HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH---------HHSCSSHHHHHHHHHHHHCTTCT--HHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHc---CcchHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHH
Confidence 56777777766654 4555666766666543 246677777888887764 3321 2222222221
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHH
Q 004093 191 NSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKR 270 (774)
Q Consensus 191 ~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r 270 (774)
.. .++|.+|...+.+ .+. ..|.. ...|.......... +..+.
T Consensus 146 ~~-------------~g~~~~A~~~~~~------al~-----~~p~~-------~~~~~~l~~~~~~~-------g~~~~ 187 (388)
T 1w3b_A 146 KA-------------LGRLEEAKACYLK------AIE-----TQPNF-------AVAWSNLGCVFNAQ-------GEIWL 187 (388)
T ss_dssp HT-------------TSCHHHHHHHHHH------HHH-----HCTTC-------HHHHHHHHHHHHTT-------TCHHH
T ss_pred HH-------------ccCHHHHHHHHHH------HHH-----hCCCC-------HHHHHHHHHHHHHc-------CCHHH
Confidence 11 3455556555443 221 11221 12444333322211 34567
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q 004093 271 IIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS 350 (774)
Q Consensus 271 ~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~ 350 (774)
+...|++++...|.+.++|..++..+...|++++|...|++++...|++..+|..++.++...|++++|...|++++...
T Consensus 188 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 267 (388)
T 1w3b_A 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHH
Q 004093 351 VNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEY 430 (774)
Q Consensus 351 ~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~y 430 (774)
|. ...+|..++..+.+.|++++|...|+++++..+....+|...+.+.... |+++.|.+.|+++++..|++...+..+
T Consensus 268 p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l 345 (388)
T 1w3b_A 268 PH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ-GNIEEAVRLYRKALEVFPEFAAAHSNL 345 (388)
T ss_dssp SS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 87 5788999999999999999999999999987777788998888876664 999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhC
Q 004093 431 ADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYG 474 (774)
Q Consensus 431 a~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~G 474 (774)
+..+...|++++|..+|+++++..| +....|..........|
T Consensus 346 ~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 346 ASVLQQQGKLQEALMHYKEAIRISP--TFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHhHHHHHHHcc
Confidence 9999999999999999999999877 34555655544433333
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.1e-22 Score=223.56 Aligned_cols=365 Identities=12% Similarity=0.077 Sum_probs=297.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 004093 66 YVEAYMAVNNDDATKQLFSRCLLICLQ-VPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYIT 144 (774)
Q Consensus 66 y~~~e~~~~n~~~a~~ifeRaL~~~p~-~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~ 144 (774)
.+......|++++|..+|++++...|+ ...|..........++ .+.+...++.+++. +|.....|...+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~------~~~a~~~~~~a~~~---~p~~~~~~~~lg~ 75 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR------LDRSAHFSTLAIKQ---NPLLAEAYSNLGN 75 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhc---CCCchHHHHHHHH
Confidence 456677899999999999999998765 5787777777665544 67889999977764 5667788988888
Q ss_pred HHhhCCcCchHHHhHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004093 145 FLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCE 224 (774)
Q Consensus 145 fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~ 224 (774)
... ..+++++|...|++++.+...+... |...... . ...+++..|...+.+
T Consensus 76 ~~~---------~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~-----------~--~~~g~~~~A~~~~~~------ 126 (388)
T 1w3b_A 76 VYK---------ERGQLQEAIEHYRHALRLKPDFIDG-YINLAAA-----------L--VAAGDMEGAVQAYVS------ 126 (388)
T ss_dssp HHH---------HHTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHH-----------H--HHHSCSSHHHHHHHH------
T ss_pred HHH---------HCCCHHHHHHHHHHHHHcCcchHHH-HHHHHHH-----------H--HHcCCHHHHHHHHHH------
Confidence 754 3688999999999999764443321 2111110 0 113556666666553
Q ss_pred HhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 004093 225 EIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDA 304 (774)
Q Consensus 225 ~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~ 304 (774)
.+.. .|... ..|.......... +..+.+...|++++...|.+...|..++..+...|++++
T Consensus 127 al~~-----~p~~~-------~~~~~l~~~~~~~-------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 127 ALQY-----NPDLY-------CVRSDLGNLLKAL-------GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HHHH-----CTTCT-------HHHHHHHHHHHTT-------SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHh-----CCCcH-------HHHHHHHHHHHHc-------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 2321 23321 2444333333221 356778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 004093 305 AIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS 384 (774)
Q Consensus 305 A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~ 384 (774)
|+..|++++...|.+...|+.++.++...|++++|...|++++...|. ...+|..++..+.+.|++++|...|+++++.
T Consensus 188 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999987 5789999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHH
Q 004093 385 PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWK 464 (774)
Q Consensus 385 ~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~ 464 (774)
.+....+|...+.+.... |+++.|.+.|+++++..|+++..+...+..+...|++++|..+|+++++..| .....|.
T Consensus 267 ~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~ 343 (388)
T 1w3b_A 267 QPHFPDAYCNLANALKEK-GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHS 343 (388)
T ss_dssp CSSCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT--TCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHHH
Confidence 777789999988886665 9999999999999999999999999999999999999999999999999888 4566777
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 465 RFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 465 ~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
.........|+.+.+...++++.+..|
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 344 NLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777777789999999999999998877
No 10
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=2.7e-22 Score=232.75 Aligned_cols=419 Identities=10% Similarity=0.019 Sum_probs=307.7
Q ss_pred CCHHHHHHHHH-HhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHH
Q 004093 21 YNVETAEILAN-SALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCY 99 (774)
Q Consensus 21 ~d~~~W~~l~~-~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~~~lW~~Y 99 (774)
.++..|..+++ ..+.+++++|+.+|++++...|+ ...|..++..+...|++++|..+|++++...++...|...
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN-----PNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCC-----chHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHH
Confidence 67889999988 45678999999999999999995 4788999999999999999999999998888899999999
Q ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHhcCCC----------------CCChHhHHHHHHHHhhCCcCchHHHhHHHHH
Q 004093 100 IRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSD----------------ISSGPIWLEYITFLKSLPALNAQEESQRMIA 163 (774)
Q Consensus 100 l~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d----------------~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ 163 (774)
+....+.++ .+.+.++|+. ....+ +....+|...+.... ..+++++
T Consensus 157 ~~~~~~~g~------~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~ 218 (597)
T 2xpi_A 157 AFCLVKLYD------WQGALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT---------NLSNFDR 218 (597)
T ss_dssp HHHHHHTTC------HHHHHHHHCS---SCTTC----------CCCSSCCHHHHHHHHHHHHHH---------HTTCHHH
T ss_pred HHHHHHHhh------HHHHHHHHhc---cCCccccccccccccccccccchhHHHHHHHHHHHH---------HcCCHHH
Confidence 988887665 6788888873 22111 112567887777644 4688999
Q ss_pred HHHHHHHHHcccCccHHHHHHHHHH-----------------HHHHh--hHHHHHHHHH------HHHHHHHHHHHHHHH
Q 004093 164 IRKAYQRAVVTPTHHVEQLWKDYEN-----------------FENSV--SRQLAKGLLS------EYQSKYTSARAVYRE 218 (774)
Q Consensus 164 ar~vYqral~~P~~~~e~l~~~y~~-----------------fE~~~--~~~lak~~l~------e~~~~y~~Ar~i~k~ 218 (774)
|+++|++++........ .|..... |.... +......+.. ...+++..|..++.+
T Consensus 219 A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 219 AKECYKEALMVDAKCYE-AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHHCTTCHH-HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCchhhH-HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 99999999975333221 1211111 00000 0000000000 012344445444432
Q ss_pred HHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004093 219 RKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAK 298 (774)
Q Consensus 219 ~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~ 298 (774)
.+ ..++. ...|...+...... +..+.+..+|++++...|.+..+|..++..+.+
T Consensus 298 ------~~-----~~~~~--------~~~~~~l~~~~~~~-------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 298 ------IN-----GLEKS--------SDLLLCKADTLFVR-------SRFIDVLAITTKILEIDPYNLDVYPLHLASLHE 351 (597)
T ss_dssp ------ST-----TGGGC--------HHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred ------hh-----cCCch--------HHHHHHHHHHHHHh-------cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHH
Confidence 11 12111 24565555433322 345677788888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHH
Q 004093 299 SGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYF 378 (774)
Q Consensus 299 ~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if 378 (774)
.|+.++|.++|++++...|.+...|..++.++...|++++|..+|+++++..+. ...+|..++..+.+.|++++|..+|
T Consensus 352 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888887775 4678888888888888888888888
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC---
Q 004093 379 LDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP--- 455 (774)
Q Consensus 379 ~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p--- 455 (774)
+++++..+....+|...+.+.... |+++.|.++|+++++..|+++..|...+..+.+.|++++|..+|+++++..|
T Consensus 431 ~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 509 (597)
T 2xpi_A 431 TTAARLFQGTHLPYLFLGMQHMQL-GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ 509 (597)
T ss_dssp HHHHHTTTTCSHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhCccchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc
Confidence 888887666677777777766565 8888888888888888888888888888888888888888888888887521
Q ss_pred --chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 456 --PEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 456 --~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
++....+|..+.......|+.+.+.++++++.+..|
T Consensus 510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 122367888888888888888888888888888876
No 11
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.92 E-value=4.7e-22 Score=230.68 Aligned_cols=415 Identities=10% Similarity=0.004 Sum_probs=327.1
Q ss_pred CCCCCHHHHHHHHHH-hccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC------
Q 004093 18 ADKYNVETAEILANS-ALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC------ 90 (774)
Q Consensus 18 ~nP~d~~~W~~l~~~-~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~------ 90 (774)
.+| |...|..++.. ...+++++|+.+|++++.. |.+ ...|..++.++.+.|++++|+++|++.....
T Consensus 113 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 186 (597)
T 2xpi_A 113 ITG-NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRS----SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNA 186 (597)
T ss_dssp HHC-CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTC----HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC------
T ss_pred hCC-CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccc----hhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccc
Confidence 567 44778888874 4667999999999998765 777 8999999999999999999999999743222
Q ss_pred -----------CCHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhC----------
Q 004093 91 -----------LQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSL---------- 149 (774)
Q Consensus 91 -----------p~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~---------- 149 (774)
.+..+|...+....+.++ .+.+.++|+++++. +|.....|..++......
T Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 257 (597)
T 2xpi_A 187 NKLLMQDGGIKLEASMCYLRGQVYTNLSN------FDRAKECYKEALMV---DAKCYEAFDQLVSNHLLTADEEWDLVLK 257 (597)
T ss_dssp ----CCCSSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHH---CTTCHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred ccccccccccchhHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHh---CchhhHHHHHHHHhhcccchhHHHHHHh
Confidence 136889888888776654 78999999988874 455667776654421100
Q ss_pred -------C------------cCchHHHhHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004093 150 -------P------------ALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYT 210 (774)
Q Consensus 150 -------~------------~~~~~~~~~~~~~ar~vYqral~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~ 210 (774)
. ....+...+++++|+++|++++..|.. ...|....... ...++|.
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~-------------~~~g~~~ 322 (597)
T 2xpi_A 258 LNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKS--SDLLLCKADTL-------------FVRSRFI 322 (597)
T ss_dssp SCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGC--HHHHHHHHHHH-------------HHTTCHH
T ss_pred cCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCch--HHHHHHHHHHH-------------HHhcCHH
Confidence 0 011234568889999999999877533 22332222111 1146777
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHH
Q 004093 211 SARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWY 290 (774)
Q Consensus 211 ~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~ 290 (774)
+|..++++. +.. .|... ..|..++...... +..+.+..+|++++...|.+..+|.
T Consensus 323 ~A~~~~~~~------~~~-----~~~~~-------~~~~~l~~~~~~~-------g~~~~A~~~~~~~~~~~~~~~~~~~ 377 (597)
T 2xpi_A 323 DVLAITTKI------LEI-----DPYNL-------DVYPLHLASLHES-------GEKNKLYLISNDLVDRHPEKAVTWL 377 (597)
T ss_dssp HHHHHHHHH------HHH-----CTTCC-------TTHHHHHHHHHHH-------TCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHH------HHc-----CcccH-------HHHHHHHHHHHHh-------CCHHHHHHHHHHHHhhCcccHHHHH
Confidence 887776643 221 12211 1344444322211 3456778999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC
Q 004093 291 DYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEG 370 (774)
Q Consensus 291 ~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~ 370 (774)
.++..+.+.|++++|+++|++++...|.+...|..++..+...|++++|..+|+++++..+. ...+|..++..+.+.|+
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 456 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGN 456 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999998886 46789999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH------cCCC-HHHHHHHHHHHHhcCChhHH
Q 004093 371 VEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR------FMHE-PAYILEYADFLSRLNDDRNI 443 (774)
Q Consensus 371 ~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~------~p~~-~~l~~~ya~~l~~~gd~~~A 443 (774)
+++|+++|+++++..+....+|...+.+.... |++++|.++|+++++. .|++ ...|..++..+...|++++|
T Consensus 457 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNK-SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999987666789999988887765 9999999999999998 4544 67889999999999999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 444 RALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 444 r~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
..+|+++++..| .....|..+.......|+.+.+.++++++.+..|
T Consensus 536 ~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 536 IDALNQGLLLST--NDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 999999999877 4568888888888899999999999999999988
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.4e-20 Score=208.12 Aligned_cols=333 Identities=13% Similarity=0.015 Sum_probs=210.9
Q ss_pred hhccccCCCCCHHHHHHHHHH-hccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004093 12 ENITGVADKYNVETAEILANS-ALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC 90 (774)
Q Consensus 12 ~~i~~~~nP~d~~~W~~l~~~-~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~ 90 (774)
+.+. .+|.+.+.|..++.. ...+++++|+.+|++++...|.+ ...|..++..+...|++++|..+|++++...
T Consensus 17 ~~~~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 17 NLYF--QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp --------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cccc--ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3445 788888888888774 45578888888888888888888 8888888888888888888888888888776
Q ss_pred CC-HHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCCh---HhHHHHHHHHhhCCcCchHHHhHHHHHHHH
Q 004093 91 LQ-VPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSG---PIWLEYITFLKSLPALNAQEESQRMIAIRK 166 (774)
Q Consensus 91 p~-~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~---~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~ 166 (774)
|+ ...|...+......++ .+.+...|+++++ .+|... ..|..++..... ..
T Consensus 91 p~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~----------------~~ 145 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLKQGK------LDEAEDDFKKVLK---SNPSENEEKEAQSQLIKSDEM----------------QR 145 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHH----------------HH
T ss_pred CCcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHh---cCCCChhhHHHHHHHHHHHHH----------------HH
Confidence 43 4566655555544333 4555566654443 233333 333322222100 00
Q ss_pred HHHHHHcccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHH
Q 004093 167 AYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWI 246 (774)
Q Consensus 167 vYqral~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~ 246 (774)
.+. .+.
T Consensus 146 ~~~-----------------------------------------~a~--------------------------------- 151 (450)
T 2y4t_A 146 LRS-----------------------------------------QAL--------------------------------- 151 (450)
T ss_dssp HHH-----------------------------------------HHH---------------------------------
T ss_pred HHH-----------------------------------------HHH---------------------------------
Confidence 000 000
Q ss_pred HHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004093 247 AWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAF 326 (774)
Q Consensus 247 lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~ 326 (774)
+.+.. +..+.+...|++++...|.+..+|..++.++...|++++|+++|++++...|.+...|+.+
T Consensus 152 -----~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 217 (450)
T 2y4t_A 152 -----NAFGS---------GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKI 217 (450)
T ss_dssp -----HHHHH---------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHH
T ss_pred -----HHHHc---------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 00001 1234455667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHH------------HHHHHHhcCHHHHHHHHHHHhcCCCCC----HH
Q 004093 327 AELEESRGAIAAAKKLYESLLTDSVNTTALAHIQF------------IRFLRRTEGVEAARKYFLDARKSPNFT----YH 390 (774)
Q Consensus 327 a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~------------a~~~~r~~~~~~Ar~if~~al~~~~~~----~~ 390 (774)
+.++...|++++|...|++++...|. ...+|..+ +..+...|++++|..+|+++++..+.. ..
T Consensus 218 ~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 296 (450)
T 2y4t_A 218 STLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR 296 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHH
Confidence 77777777777777777777776665 34444443 666666777777777777777654433 23
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHH
Q 004093 391 VYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFT 467 (774)
Q Consensus 391 ~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~ 467 (774)
+|...+.+.... |+++.|...|+++++..|+++..|...+..+...|++++|..+|+++++..|. ...+|....
T Consensus 297 ~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~ 370 (450)
T 2y4t_A 297 SKERICHCFSKD-EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN--DQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc--hHHHHHHHH
Confidence 455555554443 77777777777777777777777777777777777777777777777776662 334444433
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=4.7e-20 Score=210.47 Aligned_cols=421 Identities=12% Similarity=0.045 Sum_probs=303.0
Q ss_pred CHHHHHHHHH-HhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHH
Q 004093 22 NVETAEILAN-SALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCY 99 (774)
Q Consensus 22 d~~~W~~l~~-~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p-~~~lW~~Y 99 (774)
..+.|..++. ....+++++|...|++++...|.+ ...|..++..+...|++++|.+.|++++...| +...|...
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 99 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE----PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRR 99 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 4577888877 456679999999999999999999 99999999999999999999999999999876 47899888
Q ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcc-cC--
Q 004093 100 IRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PT-- 176 (774)
Q Consensus 100 l~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~-P~-- 176 (774)
+......++ .+.+...|+ ++. .+|.....|.. . +...+....+..+|++++.. |.
T Consensus 100 a~~~~~~g~------~~~A~~~~~-~~~---~~~~~~~~~~~---~---------~~~~~~~~~a~~~~~~~l~~~~~~~ 157 (537)
T 3fp2_A 100 ASANESLGN------FTDAMFDLS-VLS---LNGDFDGASIE---P---------MLERNLNKQAMKVLNENLSKDEGRG 157 (537)
T ss_dssp HHHHHHHTC------HHHHHHHHH-HHC-----------------C---------HHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHcCC------HHHHHHHHH-HHh---cCCCCChHHHH---H---------HHHHHHHHHHHHHHHHHHHhCcccc
Confidence 888877665 678888885 543 33333333321 1 11234556788888888753 21
Q ss_pred ----ccHHHHHHHHHHHHHH------------------hhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004093 177 ----HHVEQLWKDYENFENS------------------VSRQLAK------GLLSEYQSKYTSARAVYRERKKYCEEIDW 228 (774)
Q Consensus 177 ----~~~e~l~~~y~~fE~~------------------~~~~lak------~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~ 228 (774)
.....+...+..+... +...+.. .-..+..+.|..|..+++ +.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~------~~l~- 230 (537)
T 3fp2_A 158 SQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYH------SLLS- 230 (537)
T ss_dssp -CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHH------HHHC-
T ss_pred ccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH------HHHH-
Confidence 0111111111111000 0000000 001111234444444433 2332
Q ss_pred ccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004093 229 NMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKV 308 (774)
Q Consensus 229 ~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v 308 (774)
..|............|.....+.... +..+.+...|++++...|. ...|+.++..+...|++++|.+.
T Consensus 231 ----~~p~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~ 298 (537)
T 3fp2_A 231 ----ANTVDDPLRENAALALCYTGIFHFLK-------NNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKF 298 (537)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHH
T ss_pred ----HCCCcchhhHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHH
Confidence 22332100000011121111111111 3457788999999999999 99999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 004093 309 FQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT 388 (774)
Q Consensus 309 ~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~ 388 (774)
|++++...|.+..+|+.++.++...|++++|...|++++...|. ...+|..++.++...|++++|..+|+++++..+..
T Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 377 (537)
T 3fp2_A 299 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999887 46789999999999999999999999999977777
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHH------HHHHHHHHHHhc----------CChhHHHHHHHHHHh
Q 004093 389 YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPA------YILEYADFLSRL----------NDDRNIRALFERALS 452 (774)
Q Consensus 389 ~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~------l~~~ya~~l~~~----------gd~~~Ar~lfEraL~ 452 (774)
..+|...+.+.... |+++.|.+.|+++++..|++.. .+...+..+... |++++|..+|+++++
T Consensus 378 ~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 378 PEVPTFFAEILTDR-GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp THHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 88888888887665 9999999999999998765432 234556777777 999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 453 SLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 453 ~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
..| ....+|..+.......|+.+.+.+.++++.+..|
T Consensus 457 ~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 457 LDP--RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 887 4557888888888899999999999999999998
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=2.6e-19 Score=191.93 Aligned_cols=328 Identities=12% Similarity=0.023 Sum_probs=247.7
Q ss_pred CHHHHHHHHHH-hccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHH
Q 004093 22 NVETAEILANS-ALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCY 99 (774)
Q Consensus 22 d~~~W~~l~~~-~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p-~~~lW~~Y 99 (774)
|++.|..++.. ...+++++|...|++++...|.+ ...|..++..+...|++++|...|++++...| +...|...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 56788888774 45678999999999999999998 88999999999999999999999998887765 34666555
Q ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCC---CChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccC
Q 004093 100 IRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDI---SSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPT 176 (774)
Q Consensus 100 l~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~---~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~ 176 (774)
+......++ .+.+...|+++++ .+| .....|..+..... +
T Consensus 78 ~~~~~~~~~------~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~----------------~------------ 120 (359)
T 3ieg_A 78 GHLLLKQGK------LDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADE----------------M------------ 120 (359)
T ss_dssp HHHHHHHTC------HHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHH----------------H------------
T ss_pred HHHHHHcCC------hHHHHHHHHHHHh---cCCcccChHHHHHHHHHHHH----------------H------------
Confidence 555544433 4455555554433 222 11222221111100 0
Q ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHh
Q 004093 177 HHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEK 256 (774)
Q Consensus 177 ~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek 256 (774)
...+..+. +.+..
T Consensus 121 -----------------------------~~~~~~a~--------------------------------------~~~~~ 133 (359)
T 3ieg_A 121 -----------------------------QRLRSQAL--------------------------------------DAFDG 133 (359)
T ss_dssp -----------------------------HHHHHHHH--------------------------------------HHHHT
T ss_pred -----------------------------HHHHHHHH--------------------------------------HHHHc
Confidence 00000000 00111
Q ss_pred cCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Q 004093 257 GNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAI 336 (774)
Q Consensus 257 ~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~ 336 (774)
+..+.+...|++++...|.++.+|..++.++...|++++|...|++++...|.+...|+.++.++...|++
T Consensus 134 ---------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 134 ---------ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp ---------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred ---------cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 23456778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHH------------HHHHHHhcCHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHH
Q 004093 337 AAAKKLYESLLTDSVNTTALAHIQF------------IRFLRRTEGVEAARKYFLDARKSPNFTY----HVYVAYALMAF 400 (774)
Q Consensus 337 e~A~~iyek~l~~~~~~~~~~~~~~------------a~~~~r~~~~~~Ar~if~~al~~~~~~~----~~~i~~A~lE~ 400 (774)
++|...|+++++..|. ...+|..+ +..+.+.|++++|...|+++++..+... .++...+.+..
T Consensus 205 ~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 205 ELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 9999999999998886 34444433 6678889999999999999998655544 33555666655
Q ss_pred hcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 004093 401 CQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFE 470 (774)
Q Consensus 401 ~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE 470 (774)
.. |+++.|.++|+++++..|+++..+..++.++...|++++|..+|+++++..| +...+|.......
T Consensus 284 ~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 284 KD-EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE--NDQQIREGLEKAQ 350 (359)
T ss_dssp HT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHH
T ss_pred Hc-cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CChHHHHHHHHHH
Confidence 64 9999999999999999999999999999999999999999999999999888 4456666555444
No 15
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=8.3e-20 Score=206.79 Aligned_cols=433 Identities=12% Similarity=0.087 Sum_probs=312.3
Q ss_pred CHHHHHHHHH-HhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHH
Q 004093 22 NVETAEILAN-SALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ-VPLWRCY 99 (774)
Q Consensus 22 d~~~W~~l~~-~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~-~~lW~~Y 99 (774)
+.+.|...+. .+..+++++|...|++++...| + ...|..++..+...|++++|...|++++...|+ ...|...
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 79 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-D----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRR 79 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-c----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHH
Confidence 4678888888 4566799999999999999999 6 799999999999999999999999999998764 6889888
Q ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCc--
Q 004093 100 IRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTH-- 177 (774)
Q Consensus 100 l~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~-- 177 (774)
+......++ .+.+...|++++..- +.+......++..... .........+...++++...|..
T Consensus 80 ~~~~~~~g~------~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~ 144 (514)
T 2gw1_A 80 ASANEGLGK------FADAMFDLSVLSLNG---DFNDASIEPMLERNLN------KQAMSKLKEKFGDIDTATATPTELS 144 (514)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHHHSS---SCCGGGTHHHHHHHHH------HHHHHHHTTC---------------
T ss_pred HHHHHHHhh------HHHHHHHHHHHHhcC---CCccchHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 888776654 789999999888754 3333333333332211 00111122222222222111100
Q ss_pred ---------------cHHHHHHHHHHHHHHh----------hH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHhh
Q 004093 178 ---------------HVEQLWKDYENFENSV----------SR-QLAKGLLSEY---QSKYTSARAVYRERKKYC-EEID 227 (774)
Q Consensus 178 ---------------~~e~l~~~y~~fE~~~----------~~-~lak~~l~e~---~~~y~~Ar~i~k~~~~~~-~~L~ 227 (774)
....+...+..+.... .. .+...+..-. .++|..|...+++..... ..+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 224 (514)
T 2gw1_A 145 TQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc
Confidence 0000000000000000 00 0001111111 467778877766543321 1111
Q ss_pred hccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004093 228 WNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIK 307 (774)
Q Consensus 228 ~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~ 307 (774)
..|............|.......... +..+.+...|++++...|. ..+|+.++..+...|++++|..
T Consensus 225 -----~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~ 291 (514)
T 2gw1_A 225 -----KNNEDEKLKEKLAISLEHTGIFKFLK-------NDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYN 291 (514)
T ss_dssp -----TSTTCHHHHHHHHHHHHHHHHHHHHS-------SCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGG
T ss_pred -----cCccccccChHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHH
Confidence 01221100112233444433322221 3467788999999999999 9999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 004093 308 VFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF 387 (774)
Q Consensus 308 v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~ 387 (774)
.|++++...|.+..+|..++.++...|++++|...|++++...+. ...+|..++..+...|++++|..+|+++++..+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 370 (514)
T 2gw1_A 292 YFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370 (514)
T ss_dssp HHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999999999887 4678999999999999999999999999987666
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHH------HHHHHHHHHHh---cCChhHHHHHHHHHHhcCCchh
Q 004093 388 TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPA------YILEYADFLSR---LNDDRNIRALFERALSSLPPEE 458 (774)
Q Consensus 388 ~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~------l~~~ya~~l~~---~gd~~~Ar~lfEraL~~~p~e~ 458 (774)
...+|...+.+.... |+++.|.++|+++++..|+++. .+...+..+.. .|++++|..+|++++...| .
T Consensus 371 ~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~ 447 (514)
T 2gw1_A 371 APEVPNFFAEILTDK-NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP--R 447 (514)
T ss_dssp CSHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT--T
T ss_pred CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc--c
Confidence 688888888887675 9999999999999999887754 88899999999 9999999999999999877 4
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 459 SIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 459 ~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
....|..........|+.+.+...++++.+..|
T Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 448 SEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 567788888888899999999999999999988
No 16
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=9.7e-20 Score=206.21 Aligned_cols=393 Identities=11% Similarity=0.002 Sum_probs=280.7
Q ss_pred hhccccCCCCCHHHHHHHHHH-hccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004093 12 ENITGVADKYNVETAEILANS-ALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC 90 (774)
Q Consensus 12 ~~i~~~~nP~d~~~W~~l~~~-~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~ 90 (774)
+.+. .+| |..+|..++.. ...+++++|...|++++...|.+ ...|..++.++...|++++|...|++++...
T Consensus 31 ~al~--~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 31 WALE--LKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY----SKVLLRRASANEGLGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp HHHH--HCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred HHHh--cCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455 678 79999999884 45679999999999999999999 9999999999999999999999999999987
Q ss_pred CC-HHHHHHHHHHHHHHhhccCCccHHHHHHHH----------------------------------HHHHHhcCCC---
Q 004093 91 LQ-VPLWRCYIRFIRKVYEKKGTEGQEETRKAF----------------------------------DFMLSHVGSD--- 132 (774)
Q Consensus 91 p~-~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~y----------------------------------e~aL~~vg~d--- 132 (774)
|. ......++........ ...+.+.+ ...+......
T Consensus 104 ~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (514)
T 2gw1_A 104 DFNDASIEPMLERNLNKQA------MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTF 177 (514)
T ss_dssp SCCGGGTHHHHHHHHHHHH------HHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCC
T ss_pred CCccchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHH
Confidence 53 2222222222221110 00011100 0000000000
Q ss_pred -----CCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHc-----c---cCccH-----HHHHHHHHHHHHHhh
Q 004093 133 -----ISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVV-----T---PTHHV-----EQLWKDYENFENSVS 194 (774)
Q Consensus 133 -----~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~-----~---P~~~~-----e~l~~~y~~fE~~~~ 194 (774)
+.....|......... +...++++.|..+|++++. + |.... ...|..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 242 (514)
T 2gw1_A 178 ANYDESNEADKELMNGLSNLY------KRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH--------- 242 (514)
T ss_dssp SSCCSSCHHHHHHHHHHHHHS------SCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH---------
T ss_pred HHhcCCcHHHHHHHHHHHHHH------hhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH---------
Confidence 1112333333222110 0015788999999999997 3 32210 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHH
Q 004093 195 RQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFT 274 (774)
Q Consensus 195 ~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~ 274 (774)
++. +....++|..|...+.+ .+.. .|. ...|.......... +..+.+...
T Consensus 243 --~~~--~~~~~~~~~~A~~~~~~------~l~~-----~~~--------~~~~~~l~~~~~~~-------~~~~~A~~~ 292 (514)
T 2gw1_A 243 --TGI--FKFLKNDPLGAHEDIKK------AIEL-----FPR--------VNSYIYMALIMADR-------NDSTEYYNY 292 (514)
T ss_dssp --HHH--HHHHSSCHHHHHHHHHH------HHHH-----CCC--------HHHHHHHHHHHHTS-------SCCTTGGGH
T ss_pred --HHH--HHHHCCCHHHHHHHHHH------HHhh-----Ccc--------HHHHHHHHHHHHHC-------CCHHHHHHH
Confidence 011 11124567777766554 2221 122 12443333322211 123445678
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q 004093 275 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT 354 (774)
Q Consensus 275 yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~ 354 (774)
|++++...|.+..+|..++.++...|++++|+..|++++...|.+...+..++.++...|++++|..+|+++++..+. .
T Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 371 (514)
T 2gw1_A 293 FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-A 371 (514)
T ss_dssp HHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-C
T ss_pred HHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998886 4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHcCCCHH
Q 004093 355 ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT------YHVYVAYALMAFC---QDKDPKLAHNVFEAGLKRFMHEPA 425 (774)
Q Consensus 355 ~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~------~~~~i~~A~lE~~---~~gd~~~A~~ife~al~~~p~~~~ 425 (774)
..+|..++..+.+.|++++|...|+++++..+.. ..+|...+.+... . |+++.|.+.|++++...|+++.
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~ 450 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV-ENFIEATNLLEKASKLDPRSEQ 450 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc-CCHHHHHHHHHHHHHhCcccHH
Confidence 6789999999999999999999999998743322 3478888887666 5 9999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHH
Q 004093 426 YILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRF 466 (774)
Q Consensus 426 l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~ 466 (774)
.+...+.++...|++++|..+|++++...| ....+|...
T Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~ 489 (514)
T 2gw1_A 451 AKIGLAQMKLQQEDIDEAITLFEESADLAR--TMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcc--ccHHHHHHH
Confidence 999999999999999999999999999888 444555443
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.3e-18 Score=198.46 Aligned_cols=393 Identities=11% Similarity=0.046 Sum_probs=271.8
Q ss_pred hhccccCCCCCHHHHHHHHHH-hccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004093 12 ENITGVADKYNVETAEILANS-ALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC 90 (774)
Q Consensus 12 ~~i~~~~nP~d~~~W~~l~~~-~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~ 90 (774)
+.++ .+|.+..+|..++.. ...+++++|...|++++..+|++ ...|..++..+...|++++|...|+ ++...
T Consensus 50 ~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~ 122 (537)
T 3fp2_A 50 YAIE--LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH----SKALLRRASANESLGNFTDAMFDLS-VLSLN 122 (537)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHH-HHC--
T ss_pred HHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHHcCCHHHHHHHHH-HHhcC
Confidence 3455 899999999999985 45679999999999999999999 9999999999999999999999996 77665
Q ss_pred CCH-HHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhc----------------------------------CCCCCC
Q 004093 91 LQV-PLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHV----------------------------------GSDISS 135 (774)
Q Consensus 91 p~~-~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~v----------------------------------g~d~~s 135 (774)
|+. ..|.. .+..+ .. ...+...|+.++... ..++..
T Consensus 123 ~~~~~~~~~--~~~~~-~~------~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (537)
T 3fp2_A 123 GDFDGASIE--PMLER-NL------NKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAY 193 (537)
T ss_dssp -----------CHHHH-HH------HHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSH
T ss_pred CCCChHHHH--HHHHH-HH------HHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHH
Confidence 542 22211 11111 10 234555555443321 000000
Q ss_pred hHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004093 136 GPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAV 215 (774)
Q Consensus 136 ~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i 215 (774)
..++..+..+.... ........++++.|..+|++++.....+. .+|..+...... ...+....+++..|...
T Consensus 194 ~~~~~~l~~~~~~~-~~~~~~a~~~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~------~g~~~~~~~~~~~A~~~ 265 (537)
T 3fp2_A 194 ALLSDALQRLYSAT-DEGYLVANDLLTKSTDMYHSLLSANTVDD-PLRENAALALCY------TGIFHFLKNNLLDAQVL 265 (537)
T ss_dssp HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHHHHHHHHC--CCCH-HHHHHHHHHHHH------HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHCCCcc-hhhHHHHHHHHH------HHHHHHhcccHHHHHHH
Confidence 01222222221110 00011234678899999999997633332 222211111000 01111224567777766
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 004093 216 YRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATW 295 (774)
Q Consensus 216 ~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~ 295 (774)
+++ .+. +.|. ...|......... .+..+.+...|++++...|.++.+|+.++.+
T Consensus 266 ~~~------~~~-----~~~~--------~~~~~~l~~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 319 (537)
T 3fp2_A 266 LQE------SIN-----LHPT--------PNSYIFLALTLAD-------KENSQEFFKFFQKAVDLNPEYPPTYYHRGQM 319 (537)
T ss_dssp HHH------HHH-----HCCC--------HHHHHHHHHHTCC-------SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHH------HHh-----cCCC--------chHHHHHHHHHHH-------hcCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 554 222 1122 1233322221111 1345778899999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHH
Q 004093 296 NAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAAR 375 (774)
Q Consensus 296 l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar 375 (774)
+...|++++|++.|++++...|.+...|+.++.++...|++++|..+|++++...|. ...+|..++.++...|++++|.
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887 5679999999999999999999
Q ss_pred HHHHHHhcCC----C--CCHHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 004093 376 KYFLDARKSP----N--FTYHVYVAYALMAFCQD----------KDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLND 439 (774)
Q Consensus 376 ~if~~al~~~----~--~~~~~~i~~A~lE~~~~----------gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd 439 (774)
..|+++++.. . .....+...+.+... . |+++.|...|+++++..|+++..+..++.++...|+
T Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILAR-QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH-HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH-HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 9999998732 1 122233444443222 3 789999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCc
Q 004093 440 DRNIRALFERALSSLPP 456 (774)
Q Consensus 440 ~~~Ar~lfEraL~~~p~ 456 (774)
+++|+.+|+++++..|.
T Consensus 478 ~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 478 IDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999999999998773
No 18
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=2.7e-19 Score=191.26 Aligned_cols=186 Identities=12% Similarity=0.117 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 269 KRIIFTYEQCLM-YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEM-LRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 269 ~r~~~~yeraL~-~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~-l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
+.++.+|++++. +.|.+..+|+.|+.++...|++++|+++|+++++..|.+.. +|+.|+.++...|++++|+.+|+++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 567789999999 69999999999999999999999999999999999998876 8999999999999999999999999
Q ss_pred hcCCCCCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---cC-
Q 004093 347 LTDSVNTTALAHIQFIRFLRR-TEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR---FM- 421 (774)
Q Consensus 347 l~~~~~~~~~~~~~~a~~~~r-~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~---~p- 421 (774)
++..|. ...+|+.++.++.. .|+++.|+.+|+++++..+....+|..++.++... |+++.|+.+|++++.. .|
T Consensus 161 ~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 161 REDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL-NEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHSSSSCGG
T ss_pred HhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhccCCCHH
Confidence 998886 46788888877654 69999999999999997666799999999998775 9999999999999996 34
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCc
Q 004093 422 HEPAYILEYADFLSRLNDDRNIRALFERALSSLPP 456 (774)
Q Consensus 422 ~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~ 456 (774)
+...+|..|+.++...|+.++|+.+++++++.+|.
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 47889999999999999999999999999999884
No 19
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.83 E-value=3.3e-17 Score=182.70 Aligned_cols=318 Identities=13% Similarity=0.040 Sum_probs=251.7
Q ss_pred CCCCCHHHHHHHHHH-hccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCH---
Q 004093 18 ADKYNVETAEILANS-ALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQV--- 93 (774)
Q Consensus 18 ~nP~d~~~W~~l~~~-~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~~--- 93 (774)
.+|.+..+|..++.. ...+++++|...|++++...|.. ...|..++.++...|++++|..+|++++...|+.
T Consensus 55 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 130 (450)
T 2y4t_A 55 GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEE 130 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHH
T ss_pred hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Confidence 799999999999885 45679999999999999999999 9999999999999999999999999999987763
Q ss_pred -HHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHH
Q 004093 94 -PLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAV 172 (774)
Q Consensus 94 -~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral 172 (774)
..|..++..... ...+..+. .+ ...++++.|..+|++++
T Consensus 131 ~~~~~~l~~~~~~-------------~~~~~~a~-----------------~~----------~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 131 KEAQSQLIKSDEM-------------QRLRSQAL-----------------NA----------FGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp HHHHHHHHHHHHH-------------HHHHHHHH-----------------HH----------HHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------HHHHHHHH-----------------HH----------HHcCCHHHHHHHHHHHH
Confidence 566555544221 11122111 11 12466788888888888
Q ss_pred cccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHH
Q 004093 173 VTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLL 252 (774)
Q Consensus 173 ~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi 252 (774)
.....+.. +| ....
T Consensus 171 ~~~~~~~~-~~-----------------------------------------------------------------~~l~ 184 (450)
T 2y4t_A 171 EVCVWDAE-LR-----------------------------------------------------------------ELRA 184 (450)
T ss_dssp HHCTTCHH-HH-----------------------------------------------------------------HHHH
T ss_pred HhCCCChH-HH-----------------------------------------------------------------HHHH
Confidence 64222211 10 0000
Q ss_pred H--HHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH----
Q 004093 253 T--FEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAF---- 326 (774)
Q Consensus 253 ~--~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~---- 326 (774)
. +.. +..+.+..+|++++...|.+..+|..++..+...|++++|+..|++++...|.+...+..+
T Consensus 185 ~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 185 ECFIKE---------GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHT---------TCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHC---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 0 111 1234457889999999999999999999999999999999999999999999998888766
Q ss_pred --------HHHHHHhCCHHHHHHHHHHHhcCCCCCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004093 327 --------AELEESRGAIAAAKKLYESLLTDSVNTT---ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAY 395 (774)
Q Consensus 327 --------a~l~e~~g~~e~A~~iyek~l~~~~~~~---~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~ 395 (774)
+..+...|++++|..+|++++...|... ..+|..++.++.+.|++++|...|+++++..+....+|...
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 8888899999999999999999888632 34778889999999999999999999998766678999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHH------------HHHHhcC-----ChhHHHHHHHH-HHhcCC
Q 004093 396 ALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYA------------DFLSRLN-----DDRNIRALFER-ALSSLP 455 (774)
Q Consensus 396 A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya------------~~l~~~g-----d~~~Ar~lfEr-aL~~~p 455 (774)
+.+.... |+++.|...|+++++..|+++..+..++ +++..+| +.++++..|.+ ++...|
T Consensus 336 ~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 336 AEAYLIE-EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCG
T ss_pred HHHHHHh-cCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCC
Confidence 8887665 9999999999999999999998887766 3344444 56788999987 777666
No 20
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=1.7e-16 Score=169.88 Aligned_cols=318 Identities=11% Similarity=0.007 Sum_probs=256.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHh
Q 004093 60 AKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPI 138 (774)
Q Consensus 60 ~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p-~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~i 138 (774)
.+.|...+......|++++|..+|++++...| +..+|...+......++ .+.+...|+++++. +|....+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~------~~~A~~~~~~~~~~---~~~~~~~ 73 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK------SKAALPDLTKVIAL---KMDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------HHHHHHHHHHHHHH---CTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccC------HHHHHHHHHHHHHh---CCCcchH
Confidence 67899999999999999999999999999875 47888888887776665 67889999988765 4556677
Q ss_pred HHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004093 139 WLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRE 218 (774)
Q Consensus 139 W~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~ 218 (774)
|...+.... ..++++.|...|++++.........
T Consensus 74 ~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~~~~~------------------------------------- 107 (359)
T 3ieg_A 74 RLQRGHLLL---------KQGKLDEAEDDFKKVLKSNPSEQEE------------------------------------- 107 (359)
T ss_dssp HHHHHHHHH---------HHTCHHHHHHHHHHHHTSCCCHHHH-------------------------------------
T ss_pred HHHHHHHHH---------HcCChHHHHHHHHHHHhcCCcccCh-------------------------------------
Confidence 877777644 3577888888888888653210000
Q ss_pred HHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004093 219 RKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAK 298 (774)
Q Consensus 219 ~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~ 298 (774)
...|..+..... ...++..+..+..
T Consensus 108 --------------------------~~~~~~l~~~~~-----------------------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 108 --------------------------KEAESQLVKADE-----------------------------MQRLRSQALDAFD 132 (359)
T ss_dssp --------------------------HHHHHHHHHHHH-----------------------------HHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHH-----------------------------HHHHHHHHHHHHH
Confidence 001100000000 1235566778899
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHH
Q 004093 299 SGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYF 378 (774)
Q Consensus 299 ~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if 378 (774)
.|++++|+++|++++...|.+..++..++.++...|++++|...|++++...|. ...+|..++.++...|+++.|...|
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887 5789999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHH------------HHHHHhcCCCHHHHHHHHHHHHHHcCCCHHH----HHHHHHHHHhcCChhH
Q 004093 379 LDARKSPNFTYHVYVAY------------ALMAFCQDKDPKLAHNVFEAGLKRFMHEPAY----ILEYADFLSRLNDDRN 442 (774)
Q Consensus 379 ~~al~~~~~~~~~~i~~------------A~lE~~~~gd~~~A~~ife~al~~~p~~~~l----~~~ya~~l~~~gd~~~ 442 (774)
+++++..+....++..+ +.+... .|+++.|.++|+++++..|+++.+ +...+..+...|++++
T Consensus 212 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 212 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR-DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 99998766655554322 444445 499999999999999999998755 4467888999999999
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 443 IRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 443 Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
|..+|+++++..| ....+|..........|+.+.+...++++.+..|
T Consensus 291 A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 291 AIRICSEVLQMEP--DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999999999877 4567888888888899999999999999999988
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.7e-17 Score=174.57 Aligned_cols=205 Identities=13% Similarity=0.057 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 004093 269 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 348 (774)
Q Consensus 269 ~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~ 348 (774)
+.+...|++++...|.+..+|..++..+...|++++|++.|++++...|.+...++.++.++...|++++|...|++++.
T Consensus 108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34456677777777778888888888888888888888888888888888777777888888888888888888888888
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC---------CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 004093 349 DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP---------NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR 419 (774)
Q Consensus 349 ~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~---------~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~ 419 (774)
..|. ...+|..++.++...|++++|...|+++++.. +....+|...+.+.... |+++.|...|+++++.
T Consensus 188 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 188 IAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL-KKYAEALDYHRQALVL 265 (330)
T ss_dssp TCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred hCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhh
Confidence 8776 46778888888888888888888888887631 23356777777775554 8888888888888888
Q ss_pred cCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHH-HHHHhCCHH
Q 004093 420 FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQ-FEQMYGDLD 477 (774)
Q Consensus 420 ~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~-fE~~~Gd~~ 477 (774)
.|+++..+...+.++...|++++|..+|+++++..| +....|..+.. ++...|+.+
T Consensus 266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 266 IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR--DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS--CCHHHHHHHHHHHHTTTTC--
T ss_pred CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC--CchHHHHHHHHHHHHHhCchh
Confidence 888888888888888888888888888888888777 23344444443 445566654
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=5.6e-17 Score=172.04 Aligned_cols=169 Identities=12% Similarity=0.043 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q 004093 270 RIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTD 349 (774)
Q Consensus 270 r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~ 349 (774)
.+...|++++...|.+...|+.++..+...|++++|.+.|++++...|.+..+|+.++.++...|++++|...|++++..
T Consensus 143 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34455666666666666666667777777777777777777777777777667777777777777777777777776654
Q ss_pred CC--------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 004093 350 SV--------NTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM 421 (774)
Q Consensus 350 ~~--------~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p 421 (774)
.+ .....+|..++.++...|++++|...|+++++..+....+|...+.+.... |+++.|.+.|+++++..|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM-GNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH-TCHHHHHHHHHTTTTTCS
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHh-ccHHHHHHHHHHHHccCC
Confidence 31 112356666677777777777777777777765555566666666665554 677777777777777777
Q ss_pred CCHHHHHHHHHHH-HhcCC
Q 004093 422 HEPAYILEYADFL-SRLND 439 (774)
Q Consensus 422 ~~~~l~~~ya~~l-~~~gd 439 (774)
+++..+...+..+ ...|+
T Consensus 302 ~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC
T ss_pred CchHHHHHHHHHHHHHhCc
Confidence 7776666666654 33443
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=6.2e-16 Score=173.81 Aligned_cols=140 Identities=10% Similarity=0.011 Sum_probs=78.8
Q ss_pred CCCCCHHHHHHHHHH-hccCChhhHHHHHHHHHHh---------CCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004093 18 ADKYNVETAEILANS-ALHLPVAQAAPIYEQLLSV---------FPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCL 87 (774)
Q Consensus 18 ~nP~d~~~W~~l~~~-~~~~~i~~Ar~~yeral~~---------~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL 87 (774)
.++.....+..++.. ...+++++|...|++++++ +|.. ...|..++..+...|++++|...|++++
T Consensus 46 ~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~----~~~~~nla~~y~~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRS----LVTWGNYAWVYYHMGRLSDVQIYVDKVK 121 (472)
T ss_dssp C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTT----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHH----HHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 344445566666663 3446788888888888876 5666 7778888888888888888888888887
Q ss_pred ccCC---------CHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHh
Q 004093 88 LICL---------QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEES 158 (774)
Q Consensus 88 ~~~p---------~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~ 158 (774)
...+ ...++..........+ ....+++...|+++++. +|+...+|..+...... ....
T Consensus 122 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~------l~~~ 188 (472)
T 4g1t_A 122 HVCEKFSSPYRIESPELDCEEGWTRLKCG----GNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYR------LDNW 188 (472)
T ss_dssp HHHHHSCCSSCCCCHHHHHHHHHHHHHHC----TTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHH------HHHS
T ss_pred HHhHhcccccchhhHHHHHHHHHHHHHHc----cccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH------hcCc
Confidence 6421 1233222211111111 12356677777766653 45555566555443221 0111
Q ss_pred HHHHHHHHHHHHHHcc
Q 004093 159 QRMIAIRKAYQRAVVT 174 (774)
Q Consensus 159 ~~~~~ar~vYqral~~ 174 (774)
++.+.|...|++++.+
T Consensus 189 ~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRL 204 (472)
T ss_dssp CCCCCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhc
Confidence 2234455666666654
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=1.5e-16 Score=172.80 Aligned_cols=223 Identities=13% Similarity=0.066 Sum_probs=196.6
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
..+.++..|++++...|.+..+|+.++..+...|++++|++.|++++...|.+...|+.++.++...|++++|..+|+++
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 159 (365)
T 4eqf_A 80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNW 159 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcHHHH----------HHHHHHHHHhcCHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 004093 347 LTDSVNTTALAH----------IQFIRFLRRTEGVEAARKYFLDARKSPNF--TYHVYVAYALMAFCQDKDPKLAHNVFE 414 (774)
Q Consensus 347 l~~~~~~~~~~~----------~~~a~~~~r~~~~~~Ar~if~~al~~~~~--~~~~~i~~A~lE~~~~gd~~~A~~ife 414 (774)
+...|. ...+| ..++..+...|++++|+.+|+++++..+. ...+|...+.+.... |+++.|+++|+
T Consensus 160 l~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 237 (365)
T 4eqf_A 160 IKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS-GEFNRAIDAFN 237 (365)
T ss_dssp HHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred HHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence 998764 22233 34477888899999999999999987665 688999999887775 99999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc
Q 004093 415 AGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRT 493 (774)
Q Consensus 415 ~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk~ 493 (774)
++++..|+++..|..++..+...|++++|+.+|++++...| .....|..........|+.+.+...++++.+..|+.
T Consensus 238 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 238 AALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP--GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999888 447788888888889999999999999999999853
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=1.2e-16 Score=173.59 Aligned_cols=224 Identities=12% Similarity=0.045 Sum_probs=190.0
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH----------HHHHHHhCCH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAF----------AELEESRGAI 336 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~----------a~l~e~~g~~ 336 (774)
..+.++..|++++...|.+..+|..++..+...|++++|++.|++++...|.+...+..+ +.++...|++
T Consensus 114 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 193 (365)
T 4eqf_A 114 NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVL 193 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhH
Confidence 346677899999999999999999999999999999999999999999998776655544 7888888999
Q ss_pred HHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 004093 337 AAAKKLYESLLTDSVNT-TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEA 415 (774)
Q Consensus 337 e~A~~iyek~l~~~~~~-~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~ 415 (774)
++|..+|++++...|.. ...+|..++.++.+.|++++|+.+|+++++..+....+|...+.+.... |+++.|+..|++
T Consensus 194 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 272 (365)
T 4eqf_A 194 EGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANG-DRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 99999999999988862 4679999999999999999999999999997777799999999887775 999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchh----------HHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 416 GLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEE----------SIEVWKRFTQFEQMYGDLDSTLKVEQR 485 (774)
Q Consensus 416 al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~----------~~~lw~~~~~fE~~~Gd~~~i~kv~~R 485 (774)
+++..|+++..+..++..+...|++++|+.+|++++...|... ...+|..+.......|..+.+.++.+|
T Consensus 273 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 273 ALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999999999999999999999999998655211 357899888888889999888877777
Q ss_pred HHHHcc
Q 004093 486 RKEALS 491 (774)
Q Consensus 486 ~~~~~p 491 (774)
.+..+.
T Consensus 353 ~l~~~~ 358 (365)
T 4eqf_A 353 DLDVLL 358 (365)
T ss_dssp CCGGGT
T ss_pred hHHHHH
Confidence 555554
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=2.2e-16 Score=170.76 Aligned_cols=306 Identities=11% Similarity=-0.043 Sum_probs=206.0
Q ss_pred ChhhHHH-HHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHhhccCCcc
Q 004093 37 PVAQAAP-IYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEG 114 (774)
Q Consensus 37 ~i~~Ar~-~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p-~~~lW~~Yl~~~~~~~~~~~~~~ 114 (774)
++++|.. .|++++...|.++......|...+..+...|++++|..+|++++...| +..+|...+......++
T Consensus 40 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------ 113 (368)
T 1fch_A 40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ------ 113 (368)
T ss_dssp ------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC------
Confidence 5677777 777777777766211134577888888888888888888888887765 45777766666655443
Q ss_pred HHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHhh
Q 004093 115 QEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVS 194 (774)
Q Consensus 115 ~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~~~e~l~~~y~~fE~~~~ 194 (774)
.+.+...|+++++. +|....+|...+.... ..++.+.|...|++++........ .+.
T Consensus 114 ~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~-~~~---------- 170 (368)
T 1fch_A 114 ELLAISALRRCLEL---KPDNQTALMALAVSFT---------NESLQRQACEILRDWLRYTPAYAH-LVT---------- 170 (368)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH---------HTTCHHHHHHHHHHHHHTSTTTGG-GCC----------
T ss_pred HHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCcCcHH-HHH----------
Confidence 56777777776664 3555666766666543 246677777777777653211100 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHH
Q 004093 195 RQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFT 274 (774)
Q Consensus 195 ~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~ 274 (774)
. .. . ....
T Consensus 171 --------------------------------------~-------------~~----~-~~~~---------------- 178 (368)
T 1fch_A 171 --------------------------------------P-------------AE----E-GAGG---------------- 178 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------H-------------HH----H-Hhhh----------------
Confidence 0 00 0 0000
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 004093 275 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPD--SEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 275 yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~--~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~ 352 (774)
......+..++.++ ..|++++|+..|++++...|. +..++..++.++...|++++|...|++++...|.
T Consensus 179 --------~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 249 (368)
T 1fch_A 179 --------AGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 249 (368)
T ss_dssp ---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred --------hcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 00001112233334 667788888888888888887 6778888888888888888888888888887775
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC---------
Q 004093 353 TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE--------- 423 (774)
Q Consensus 353 ~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~--------- 423 (774)
...+|..++.++...|++++|...|+++++..+....+|...+.+.... |+++.|...|+++++..|++
T Consensus 250 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 327 (368)
T 1fch_A 250 -DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL-GAHREAVEHFLEALNMQRKSRGPRGEGGA 327 (368)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHTC------CCC
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCCCccccccc
Confidence 4677888888888888888888888888876666677888777776665 88888888888888887776
Q ss_pred --HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 004093 424 --PAYILEYADFLSRLNDDRNIRALFERALSSL 454 (774)
Q Consensus 424 --~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~ 454 (774)
...|..++..+..+|++++|..++++++..+
T Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 328 MSENIWSTLRLALSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHH
Confidence 7889999999999999999999999887643
No 27
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=3.9e-16 Score=157.99 Aligned_cols=196 Identities=15% Similarity=0.119 Sum_probs=110.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 004093 283 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 362 (774)
Q Consensus 283 p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a 362 (774)
|.++.+|+.++..+.+.|++++|+..|+++++..|++...|+.++.++...|++++|...|+++++..|. ...+|..++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 4555666666666666666666666666666666666666666666666666666666666666666654 355666666
Q ss_pred HHHHHh-----------cCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 004093 363 RFLRRT-----------EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYA 431 (774)
Q Consensus 363 ~~~~r~-----------~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya 431 (774)
.++... |++++|...|+++++..+....+|...+.+.... |++++|+..|+++++.. +++..+..++
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~-~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL-GERDKAEASLKQALALE-DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcc-cchHHHHHHH
Confidence 666666 6666666666666665444556666655554443 66666666666666666 5566666666
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004093 432 DFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVE 483 (774)
Q Consensus 432 ~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~ 483 (774)
..+...|++++|...|++++...| ....+|..+.......|+.+.+...+
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAP--KDLDLRVRYASALLLKGKAEEAARAA 208 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHTC-----------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHccCHHHHHHHH
Confidence 666666666666666666666555 23344444444444455554444433
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=4.6e-16 Score=157.44 Aligned_cols=184 Identities=14% Similarity=0.011 Sum_probs=159.0
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------C
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESR-----------G 334 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~-----------g 334 (774)
+..+.++..|++++..+|.++.+|+.++..+.+.|++++|+..|+++++..|++...|+.++.++... |
T Consensus 19 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g 98 (217)
T 2pl2_A 19 GRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKG 98 (217)
T ss_dssp TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 34577889999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 004093 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFE 414 (774)
Q Consensus 335 ~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife 414 (774)
++++|...|+++++..|. ...+|..++..+...|++++|+..|+++++.. ....++...+.+.... |+++.|+..|+
T Consensus 99 ~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~-g~~~~A~~~~~ 175 (217)
T 2pl2_A 99 YLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSM-GRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 999999999999999997 67899999999999999999999999999877 7799999999887675 99999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004093 415 AGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALS 452 (774)
Q Consensus 415 ~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~ 452 (774)
++++..|+++..+..++.++...|++++|...|+++-.
T Consensus 176 ~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 176 KALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998754
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.69 E-value=3e-15 Score=161.88 Aligned_cols=222 Identities=15% Similarity=0.071 Sum_probs=191.1
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
..+.+...|++++...|.+..+|+.++..+...|++++|++.|++++...|.+...|..++.++...|++++|...|+++
T Consensus 79 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (368)
T 1fch_A 79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW 158 (368)
T ss_dssp CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcHHHHH----------------HHHHHHHHhcCHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCCHHH
Q 004093 347 LTDSVNTTALAHI----------------QFIRFLRRTEGVEAARKYFLDARKSPNF--TYHVYVAYALMAFCQDKDPKL 408 (774)
Q Consensus 347 l~~~~~~~~~~~~----------------~~a~~~~r~~~~~~Ar~if~~al~~~~~--~~~~~i~~A~lE~~~~gd~~~ 408 (774)
+...|.. ..++. .++.++ ..|++++|+.+|+++++..+. ...++...+.+.... |+++.
T Consensus 159 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~-g~~~~ 235 (368)
T 1fch_A 159 LRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS-GEYDK 235 (368)
T ss_dssp HHTSTTT-GGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT-TCHHH
T ss_pred HHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHc-CCHHH
Confidence 9988763 22222 233444 788899999999999886655 678888888876664 89999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004093 409 AHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKE 488 (774)
Q Consensus 409 A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~ 488 (774)
|...|+++++..|+++..+...+..+...|++++|..+|++++...| .....|..+.......|+.+.+...++++.+
T Consensus 236 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 236 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP--GYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877 4467777777777789999999999999998
Q ss_pred Hcccc
Q 004093 489 ALSRT 493 (774)
Q Consensus 489 ~~pk~ 493 (774)
..|+.
T Consensus 314 ~~~~~ 318 (368)
T 1fch_A 314 MQRKS 318 (368)
T ss_dssp HHHTC
T ss_pred hCCCC
Confidence 88743
No 30
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.68 E-value=2.2e-15 Score=152.70 Aligned_cols=202 Identities=9% Similarity=0.074 Sum_probs=178.5
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 004093 268 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 347 (774)
Q Consensus 268 ~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l 347 (774)
.+.+...|++++...|.+..+|+.++..+...|++++|.+.|++++...|.+..+++.++.++...|++++|..+|++++
T Consensus 39 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 118 (243)
T 2q7f_A 39 YEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL 118 (243)
T ss_dssp ---CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHH
Q 004093 348 TDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYI 427 (774)
Q Consensus 348 ~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~ 427 (774)
+..+. ...+|..++.++...|++++|...|+++++..+....++...+.+.+.. |+++.|.++|+++++..|+++..+
T Consensus 119 ~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~ 196 (243)
T 2q7f_A 119 RAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE-GMLDEALSQFAAVTEQDPGHADAF 196 (243)
T ss_dssp HHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHHHH
Confidence 98886 5789999999999999999999999999987777788999988887775 999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHh
Q 004093 428 LEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMY 473 (774)
Q Consensus 428 ~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~ 473 (774)
..++.++...|++++|..+|+++++..| +....|..+..++...
T Consensus 197 ~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 197 YNAGVTYAYKENREKALEMLDKAIDIQP--DHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHHCT--TCHHHHHHHTC-----
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCc--chHHHHHHHHHHHhhc
Confidence 9999999999999999999999999888 4456666655554433
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=4.2e-15 Score=153.70 Aligned_cols=223 Identities=11% Similarity=0.019 Sum_probs=196.9
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS----EMLRYAFAELEESRGAIAAAKK 341 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~----~~l~~~~a~l~e~~g~~e~A~~ 341 (774)
+..+.++..|++++...|.+..+|+.++..+...|++++|++.|++++. .|.+ ...|+.++.++...|++++|..
T Consensus 17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 95 (272)
T 3u4t_A 17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQ 95 (272)
T ss_dssp TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHH
Confidence 3467788999999999999999999999999999999999999999999 4443 3458899999999999999999
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 004093 342 LYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM 421 (774)
Q Consensus 342 iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p 421 (774)
.|+++++..|. ...+|..++.++...|++++|...|+++++..+....+|...+...+.. ++++.|.+.|+++++..|
T Consensus 96 ~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p 173 (272)
T 3u4t_A 96 QYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-KEYVKADSSFVKVLELKP 173 (272)
T ss_dssp HHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHST
T ss_pred HHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCc
Confidence 99999999887 5689999999999999999999999999998878899999998444554 799999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcC---Cchh---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 422 HEPAYILEYADFLSRLND---DRNIRALFERALSSL---PPEE---SIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 422 ~~~~l~~~ya~~l~~~gd---~~~Ar~lfEraL~~~---p~e~---~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
++...+...+..+...++ +++|...|+++++.. +... ...+|.....+....|+.+.+...++++.+..|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 999988888888888888 888999999999865 3211 236777777777789999999999999999998
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=5.2e-15 Score=156.54 Aligned_cols=222 Identities=12% Similarity=0.022 Sum_probs=196.5
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
..+.+..+|++++...|.+..+|+.++..+...|++++|.+.|++++...|.+...+..++.++...|++++|...|+++
T Consensus 36 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 115 (327)
T 3cv0_A 36 NLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 115 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcHHHHHHH--------------HH-HHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHH
Q 004093 347 LTDSVNTTALAHIQF--------------IR-FLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHN 411 (774)
Q Consensus 347 l~~~~~~~~~~~~~~--------------a~-~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ 411 (774)
+...+.. ..++..+ +. ++...|++++|..+|+++++..+....++...+.+.... |+++.|.+
T Consensus 116 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~ 193 (327)
T 3cv0_A 116 LLSQPQY-EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS-NNYDSAAA 193 (327)
T ss_dssp HHTSTTT-TTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHhCCcc-HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-ccHHHHHH
Confidence 9988762 3344443 33 366788999999999999987777789999988887665 99999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 412 VFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 412 ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
+|+++++..|+++..+...+..+...|++++|..+|++++...| .....|..........|+.+.+.+.++++.+..|
T Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 194 NLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP--GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV 271 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999877 4466777888888899999999999999999988
Q ss_pred c
Q 004093 492 R 492 (774)
Q Consensus 492 k 492 (774)
.
T Consensus 272 ~ 272 (327)
T 3cv0_A 272 G 272 (327)
T ss_dssp T
T ss_pred c
Confidence 4
No 33
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=5.4e-15 Score=163.15 Aligned_cols=221 Identities=10% Similarity=-0.030 Sum_probs=190.8
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGS-IDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~-~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
..++++..|+++|..+|.+..+|+..+..+...|+ +++|+..|++|+..+|++..+|+.++.++...|++++|...|++
T Consensus 112 ~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~k 191 (382)
T 2h6f_A 112 RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIAD 191 (382)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 46788999999999999999999999999999996 99999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc
Q 004093 346 LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLA-----HNVFEAGLKRF 420 (774)
Q Consensus 346 ~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A-----~~ife~al~~~ 420 (774)
++..+|. ...+|..++.++.+.|++++|...|+++++..+....+|...+.+.....|..+.| ...|++++...
T Consensus 192 al~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~ 270 (382)
T 2h6f_A 192 ILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270 (382)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred HHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC
Confidence 9999997 68899999999999999999999999999987778999999988866644554667 58999999999
Q ss_pred CCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhC--------C-HHHHHHHHHHH-HH
Q 004093 421 MHEPAYILEYADFLSRLN--DDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYG--------D-LDSTLKVEQRR-KE 488 (774)
Q Consensus 421 p~~~~l~~~ya~~l~~~g--d~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~G--------d-~~~i~kv~~R~-~~ 488 (774)
|++...|..++.++...| ++++|...++++ ...| +...++..+.++....| + .+.+.++++++ .+
T Consensus 271 P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p--~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 271 PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH--SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC--CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC--CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 999999999999888887 689999999887 5555 34455555555544443 2 46777777777 66
Q ss_pred Hcc
Q 004093 489 ALS 491 (774)
Q Consensus 489 ~~p 491 (774)
..|
T Consensus 348 ~DP 350 (382)
T 2h6f_A 348 KDT 350 (382)
T ss_dssp TCG
T ss_pred hCc
Confidence 666
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=3.7e-15 Score=157.68 Aligned_cols=224 Identities=12% Similarity=0.066 Sum_probs=193.6
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHH
Q 004093 268 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAF--------------AE-LEES 332 (774)
Q Consensus 268 ~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~--------------a~-l~e~ 332 (774)
.+.+...|++++...|.+..+|..++..+...|++++|.+.|++++...|.+...+..+ +. ++..
T Consensus 71 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (327)
T 3cv0_A 71 DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA 150 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTS
T ss_pred HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHH
Confidence 45677889999999999999999999999999999999999999999999887766655 44 4566
Q ss_pred hCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 004093 333 RGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNV 412 (774)
Q Consensus 333 ~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~i 412 (774)
.|++++|..+|++++...+. ...+|..++..+...|++++|..+|+++++..+....+|...+.+.... |+++.|.+.
T Consensus 151 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~ 228 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANG-NRPQEALDA 228 (327)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 78899999999999998886 5789999999999999999999999999987777788999888887665 999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCch----------hHHHHHHHHHHHHHHhCCHHHHHHH
Q 004093 413 FEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPE----------ESIEVWKRFTQFEQMYGDLDSTLKV 482 (774)
Q Consensus 413 fe~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e----------~~~~lw~~~~~fE~~~Gd~~~i~kv 482 (774)
|+++++..|+++..+...+.++...|++++|..+|++++...|.. ....+|..+.......|+.+.+..+
T Consensus 229 ~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 229 YNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999999999999999999999999999977620 0577888888888899999999999
Q ss_pred HHHHHHHcccc
Q 004093 483 EQRRKEALSRT 493 (774)
Q Consensus 483 ~~R~~~~~pk~ 493 (774)
.+++.+.+++.
T Consensus 309 ~~~~l~~~~~~ 319 (327)
T 3cv0_A 309 YAQNVEPFAKE 319 (327)
T ss_dssp TTCCSHHHHHH
T ss_pred HHHHHHhcchh
Confidence 88888888743
No 35
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=1.4e-14 Score=144.45 Aligned_cols=207 Identities=14% Similarity=0.075 Sum_probs=184.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 004093 282 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQF 361 (774)
Q Consensus 282 ~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~ 361 (774)
.|.++.+|+.++..+...|++++|++.|++++...|.+...|+.++.++...|++++|..+|++++...+. ...+|..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 82 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNY 82 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999998886 57889999
Q ss_pred HHHHHHh-cCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 004093 362 IRFLRRT-EGVEAARKYFLDARK--SPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLN 438 (774)
Q Consensus 362 a~~~~r~-~~~~~Ar~if~~al~--~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~g 438 (774)
+.++... |++++|..+|+++++ ..+....+|...+.+.... |+++.|...|+++++..|+++..+...+..+...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ-GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence 9999999 999999999999999 4344477888888876665 99999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 439 DDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 439 d~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
++++|..+|++++...|. .....|.....+....|+.+.+..+.+.+.+..|
T Consensus 162 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEV-LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp CHHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 999999999999997661 2345566667777789999999999999988887
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=1.6e-14 Score=147.63 Aligned_cols=206 Identities=18% Similarity=0.168 Sum_probs=182.8
Q ss_pred cCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHH
Q 004093 282 LYHY-PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQ 360 (774)
Q Consensus 282 ~p~~-~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~ 360 (774)
+|.. +.+|+.++..+...|++++|++.|++++...|.+...|+.++.++...|++++|..+|+++++..+. ...+|..
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 110 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNN 110 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHH
Confidence 4444 6889999999999999999999999999999999999999999999999999999999999998886 5788999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 004093 361 FIRFLRRTEGVEAARKYFLDARK--SPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLN 438 (774)
Q Consensus 361 ~a~~~~r~~~~~~Ar~if~~al~--~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~g 438 (774)
++..+...|++++|+.+|+++++ ..+....++...+.+.... |+++.|.++|+++++..|+++..+..++.++...|
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM-KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 99999999999999999999998 5555577888888876665 99999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 439 DDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 439 d~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
++++|..+|++++...| .....|.....+....|+.+.+.++++++.+..|
T Consensus 190 ~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGG--QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp CHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 99999999999999877 3456677777777789999999999999999888
No 37
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.67 E-value=7.5e-15 Score=143.19 Aligned_cols=171 Identities=14% Similarity=0.037 Sum_probs=160.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 004093 283 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 362 (774)
Q Consensus 283 p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a 362 (774)
..++.+|+.++..+.+.|++++|++.|+++++.+|++...|+.++.++...|++++|...+++++...+. ...++..++
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999999999999887 578999999
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhH
Q 004093 363 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRN 442 (774)
Q Consensus 363 ~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~ 442 (774)
.+....++++.|...+.+++...+....++...+.+.... |++++|.+.|+++++..|+++..|...+..+..+|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSM-GEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHh-CCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999998777899999998887665 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 004093 443 IRALFERALSSLP 455 (774)
Q Consensus 443 Ar~lfEraL~~~p 455 (774)
|...|++||+..|
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999999876
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=4.5e-14 Score=143.93 Aligned_cols=213 Identities=14% Similarity=0.052 Sum_probs=191.8
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCCHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS-------EMLRYAFAELEESRGAIAA 338 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~-------~~l~~~~a~l~e~~g~~e~ 338 (774)
+..+.+...|++++... .++.+|+.++..+...|++++|++.|++++...|.+ ..+|+.++.++...|++++
T Consensus 19 ~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 97 (258)
T 3uq3_A 19 RQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKK 97 (258)
T ss_dssp TCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHH
Confidence 34677889999999999 999999999999999999999999999999988866 6889999999999999999
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004093 339 AKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLK 418 (774)
Q Consensus 339 A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~ 418 (774)
|...|++++...+. . ..+...+++++|...|++++...+....+|...+.+.... |+++.|.+.|+++++
T Consensus 98 A~~~~~~a~~~~~~--~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~ 167 (258)
T 3uq3_A 98 TIEYYQKSLTEHRT--A-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK-SDWPNAVKAYTEMIK 167 (258)
T ss_dssp HHHHHHHHHHHCCC--H-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCch--h-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh-cCHHHHHHHHHHHHh
Confidence 99999999998875 2 3455568889999999999998777788888888887775 999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 419 RFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 419 ~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
..|+++.++...+..+...|++++|..+|++++...| .....|..........|+.+.+...++++.+..|
T Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 238 (258)
T 3uq3_A 168 RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999999999999999877 4467788888888889999999999999999985
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=6.3e-14 Score=143.25 Aligned_cols=186 Identities=9% Similarity=-0.034 Sum_probs=173.0
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 004093 268 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 347 (774)
Q Consensus 268 ~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l 347 (774)
.+.+...|++++...|.+..+|+.++..+...|++++|.+.|++++...|.+..+|+.++.++...|++++|..+|++++
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 132 (252)
T 2ho1_A 53 TEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEAS 132 (252)
T ss_dssp TGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c--CCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHH
Q 004093 348 T--DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPA 425 (774)
Q Consensus 348 ~--~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~ 425 (774)
. ..+. ...+|..++..+...|++++|..+|+++++..+....++...+.+.... |+++.|..+|+++++..|++..
T Consensus 133 ~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~ 210 (252)
T 2ho1_A 133 QDTLYPE-RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE-REYVPARQYYDLFAQGGGQNAR 210 (252)
T ss_dssp TCTTCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTSCCCHH
T ss_pred hCccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCcHH
Confidence 9 5554 5678999999999999999999999999997766788999988887775 9999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 426 YILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 426 l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
.+...+.++...|++++|+.+|++++...|
T Consensus 211 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 211 SLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999887
No 40
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=6.9e-13 Score=148.85 Aligned_cols=372 Identities=13% Similarity=0.057 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC---------C-CHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhc
Q 004093 60 AKFWKQYVEAYMAVNNDDATKQLFSRCLLIC---------L-QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHV 129 (774)
Q Consensus 60 ~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~---------p-~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~v 129 (774)
..++..++..+...|++++|.+.|++++... + ....|..++......++ .+.+...|++++...
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~------~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGR------LSDVQIYVDKVKHVC 124 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHHh
Confidence 6677888999999999999999999999752 2 23556565555544443 677888888877642
Q ss_pred C-----CCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004093 130 G-----SDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSE 204 (774)
Q Consensus 130 g-----~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e 204 (774)
. .++....++.....-+.. ...+++++|...|++++.+...+.+ .+..+...... +.
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~y~~A~~~~~kal~~~p~~~~-~~~~~~~~~~~---------l~- 186 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLK-------CGGNQNERAKVCFEKALEKKPKNPE-FTSGLAIASYR---------LD- 186 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHH-------HCTTHHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHH---------HH-
T ss_pred HhcccccchhhHHHHHHHHHHHHH-------HccccHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHH---------hc-
Confidence 1 122333444433221110 1135789999999999986433332 22111111000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHH-HHHh-cCCCCCCchhchHHHHHHHHHHHHhc
Q 004093 205 YQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLL-TFEK-GNPQRIDTASSNKRIIFTYEQCLMYL 282 (774)
Q Consensus 205 ~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi-~~Ek-~n~~~~d~~~~~~r~~~~yeraL~~~ 282 (774)
..+++..|...++ +++. +.|.. ..+|..+. .+.. .. ..+..+.+..+|++++...
T Consensus 187 ~~~~~~~al~~~~------~al~-----l~p~~-------~~~~~~l~~~~~~~~~-----~~~~~~~a~~~~~~al~~~ 243 (472)
T 4g1t_A 187 NWPPSQNAIDPLR------QAIR-----LNPDN-------QYLKVLLALKLHKMRE-----EGEEEGEGEKLVEEALEKA 243 (472)
T ss_dssp HSCCCCCTHHHHH------HHHH-----HCSSC-------HHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHH------HHhh-----cCCcc-------hHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHhC
Confidence 0112222322222 2332 12322 11222221 1111 11 1134566788999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-------------------CCHHHHHHHH
Q 004093 283 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESR-------------------GAIAAAKKLY 343 (774)
Q Consensus 283 p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~-------------------g~~e~A~~iy 343 (774)
|.+..+|..++.++...|++++|+..|++|++..|++..++..++.++... +.++.|...|
T Consensus 244 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 323 (472)
T 4g1t_A 244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHL 323 (472)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999888876532 2356788889
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Q 004093 344 ESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT---YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF 420 (774)
Q Consensus 344 ek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~---~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~ 420 (774)
++++...+. ...+|..++..+...|++++|...|+++++..... ..++..++.+.....|+.+.|+..|+++++..
T Consensus 324 ~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~ 402 (472)
T 4g1t_A 324 KKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN 402 (472)
T ss_dssp HHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC
T ss_pred HHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999888876 45678888999999999999999999999764432 23455566544334589999999999999998
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 421 MHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 421 p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
|++..... ....+..++++++...| .....|..........|+.+.+.+.++|+++.-+
T Consensus 403 ~~~~~~~~----------~~~~l~~~~~~~l~~~p--~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 403 QKSREKEK----------MKDKLQKIAKMRLSKNG--ADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp CCCHHHHH----------HHHHHHHHHHHHHHHCC---CTTHHHHHHHHHHHHHHCC--------------
T ss_pred cccHHHHH----------HHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 88754322 12445677888888777 3345666666666678888888888888887655
No 41
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=1.9e-14 Score=145.62 Aligned_cols=203 Identities=12% Similarity=0.080 Sum_probs=169.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF 364 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~ 364 (774)
.+..|+..+..+...|++++|+..|++++...|.+...++.++.++...|++++|..+|++++...+. ...+|..++.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHH
Confidence 45778888999999999999999999999999999999999999999999999999999999998886 57899999999
Q ss_pred HHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHH
Q 004093 365 LRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIR 444 (774)
Q Consensus 365 ~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar 444 (774)
+...|++++|..+|+++++..+....++...+.+.... |+++.|.++|+++++..|+++..+..++..+...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL-EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999997777788999888886665 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 445 ALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 445 ~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
.+|++++...| ....+|..+.......|+.+.+.+.++++.+..|
T Consensus 180 ~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 180 SQFAAVTEQDP--GHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHCT--TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 99999999877 4466788888888889999999999999999988
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=3e-13 Score=134.65 Aligned_cols=188 Identities=13% Similarity=0.059 Sum_probs=172.6
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CCHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESR-GAIAAAKKLYE 344 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~-g~~e~A~~iye 344 (774)
+..+.+...|++++...|.+..+|..++..+...|++++|.+.|++++...|.+...+..++.++... |++++|..+|+
T Consensus 22 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 101 (225)
T 2vq2_A 22 QDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFD 101 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhc--CCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-
Q 004093 345 SLLT--DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM- 421 (774)
Q Consensus 345 k~l~--~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p- 421 (774)
+++. ..+. ...+|..++..+...|++++|...|+++++..+....++...+.+.... |+++.|..+|+++++..|
T Consensus 102 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~ 179 (225)
T 2vq2_A 102 KALADPTYPT-PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA-GQLGDADYYFKKYQSRVEV 179 (225)
T ss_dssp HHHTSTTCSC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHCS
T ss_pred HHHcCcCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC
Confidence 9999 4443 4678999999999999999999999999997777788999988887775 999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 422 HEPAYILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 422 ~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
+++..+...+.++...|+.+.+..+++.++...|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 180 LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 9998888888889999999999999999998777
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=1.8e-14 Score=158.96 Aligned_cols=205 Identities=9% Similarity=0.036 Sum_probs=180.1
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHhcCCCCCcHH
Q 004093 278 CLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGA-IAAAKKLYESLLTDSVNTTAL 356 (774)
Q Consensus 278 aL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~-~e~A~~iyek~l~~~~~~~~~ 356 (774)
++...|.+.++|..++.++...|++++|++.|+++|..+|.+..+|+..+.++...|+ +++|...|++++..+|. ...
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~ 167 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQ 167 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHH
Confidence 3456788899999999999999999999999999999999999999999999999996 99999999999999997 689
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 004093 357 AHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSR 436 (774)
Q Consensus 357 ~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~ 436 (774)
+|..++.++...|++++|...|+++++..+...++|...+.+.... |+++.|+..|+++++..|++...|...+..+..
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~-g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888899999999887776 999999999999999999999999999999988
Q ss_pred -cCChhHH-----HHHHHHHHhcCCchhHHHHHHHHHHHHHHhC--CHHHHHHHHHHH
Q 004093 437 -LNDDRNI-----RALFERALSSLPPEESIEVWKRFTQFEQMYG--DLDSTLKVEQRR 486 (774)
Q Consensus 437 -~gd~~~A-----r~lfEraL~~~p~e~~~~lw~~~~~fE~~~G--d~~~i~kv~~R~ 486 (774)
.|..++| ..+|+++|...| +....|......-...| +.+.+.+..+++
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~P--~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLVP--HNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 4555788 599999999888 45567776665555566 456666555554
No 44
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.59 E-value=3.7e-14 Score=161.07 Aligned_cols=208 Identities=15% Similarity=0.052 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 004093 269 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI-DAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 347 (774)
Q Consensus 269 ~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~-e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l 347 (774)
+++...+++++...|....+|+.++..+...|++ ++|++.|++|++..|.+...|+.++.++...|++++|...|++++
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456678888888899999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHh---------cCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--------CCHHHHH
Q 004093 348 TDSVNTTALAHIQFIRFLRRT---------EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQD--------KDPKLAH 410 (774)
Q Consensus 348 ~~~~~~~~~~~~~~a~~~~r~---------~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~--------gd~~~A~ 410 (774)
+..|. ..+|..++..+... |++++|...|+++++..+....+|..++.+... . |+++.|.
T Consensus 165 ~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 165 THCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS-LYFNTGQNPKISQQAL 241 (474)
T ss_dssp TTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHTTCCHHHHHHHH
T ss_pred hhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHhhccccchHHHHH
Confidence 99987 58999999999999 999999999999999877778999988886543 3 6799999
Q ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHH
Q 004093 411 NVFEAGLKRFM---HEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLK 481 (774)
Q Consensus 411 ~ife~al~~~p---~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~k 481 (774)
+.|+++++..| +++..|..++..+...|++++|...|++++...| +....|..........|+.+.+..
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP--AWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999999999888 445677777666666776655544
No 45
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.57 E-value=1.1e-10 Score=132.48 Aligned_cols=371 Identities=11% Similarity=-0.004 Sum_probs=191.1
Q ss_pred CCCCCHHHHHHHHHHhc-----cCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHc
Q 004093 18 ADKYNVETAEILANSAL-----HLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMA----VNNDDATKQLFSRCLL 88 (774)
Q Consensus 18 ~nP~d~~~W~~l~~~~~-----~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~----~~n~~~a~~ifeRaL~ 88 (774)
.++.|.+++..++..+. .+++++|...|++++.. .+ ...+..++.++.. .+++++|...|++++.
T Consensus 34 a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 107 (490)
T 2xm6_A 34 AESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GY----TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL 107 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 46778889888887554 35789999999999876 56 7888889999888 8899999999999987
Q ss_pred cCCCHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHH
Q 004093 89 ICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAY 168 (774)
Q Consensus 89 ~~p~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vY 168 (774)
. .+...+......... + .....+.+++...|+++.+. .....+..+.........+ .++.+.|...|
T Consensus 108 ~-~~~~a~~~Lg~~y~~-g-~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~-----~~d~~~A~~~~ 174 (490)
T 2xm6_A 108 K-GLPQAQQNLGVMYHE-G-NGVKVDKAESVKWFRLAAEQ-----GRDSGQQSMGDAYFEGDGV-----TRDYVMAREWY 174 (490)
T ss_dssp T-TCHHHHHHHHHHHHH-T-SSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSS-----CCCHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHc-C-CCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCC-----CCCHHHHHHHH
Confidence 5 355555555544432 1 11134578888889887763 2345666665554321100 24577888888
Q ss_pred HHHHcccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHH
Q 004093 169 QRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAW 248 (774)
Q Consensus 169 qral~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW 248 (774)
++++... +....+.--..+.... ...+++..|...+++ .+... .+ ..+..+-
T Consensus 175 ~~a~~~~--~~~a~~~Lg~~y~~g~----------g~~~~~~~A~~~~~~------a~~~~----~~------~a~~~lg 226 (490)
T 2xm6_A 175 SKAAEQG--NVWSCNQLGYMYSRGL----------GVERNDAISAQWYRK------SATSG----DE------LGQLHLA 226 (490)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHHTS----------SSCCCHHHHHHHHHH------HHHTT----CH------HHHHHHH
T ss_pred HHHHHCC--CHHHHHHHHHHHhcCC----------CCCcCHHHHHHHHHH------HHHCC----CH------HHHHHHH
Confidence 8887542 1111100000000000 001233333333322 11100 00 0000010
Q ss_pred HHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004093 249 KRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAK----SGSIDAAIKVFQRALKALPDSEMLRY 324 (774)
Q Consensus 249 ~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~----~g~~e~A~~v~erAl~~~P~~~~l~~ 324 (774)
. .+..+.. . ....+.+...|++++.. .++..++.++.++.. .++.++|...|++++.. .+...++
T Consensus 227 ~---~y~~g~g--~--~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~ 295 (490)
T 2xm6_A 227 D---MYYFGIG--V--TQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQY 295 (490)
T ss_dssp H---HHHHTSS--S--CCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHH
T ss_pred H---HHHcCCC--C--CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHH
Confidence 0 0111100 0 02234445555555543 344555555555555 45555555555555443 3344445
Q ss_pred HHHHHHHHh-----CCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc---CHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004093 325 AFAELEESR-----GAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE---GVEAARKYFLDARKSPNFTYHVYVAYA 396 (774)
Q Consensus 325 ~~a~l~e~~-----g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~---~~~~Ar~if~~al~~~~~~~~~~i~~A 396 (774)
.++.++... +++++|...|+++++... ..++..++.++...+ ++++|..+|+++++.. ...++..++
T Consensus 296 ~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg 370 (490)
T 2xm6_A 296 YLAHLYDKGAEGVAKNREQAISWYTKSAEQGD---ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--EKAAQFNLG 370 (490)
T ss_dssp HHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 555555544 555555555555555432 344455555444422 4555555555555542 244555544
Q ss_pred HHHHh---cCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhc
Q 004093 397 LMAFC---QDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSR----LNDDRNIRALFERALSS 453 (774)
Q Consensus 397 ~lE~~---~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~----~gd~~~Ar~lfEraL~~ 453 (774)
.+... ..+++++|.+.|+++++. .++..+..++.++.. .+++++|..+|+++++.
T Consensus 371 ~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 371 NALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 44333 024555555555555543 234444455555544 45555555555555544
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=2.7e-13 Score=139.89 Aligned_cols=222 Identities=16% Similarity=0.054 Sum_probs=189.8
Q ss_pred hchHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMY----LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKK 341 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~----~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~ 341 (774)
+..+.++..|++++.. .|.++.+|+.++..+...|++++|...|++++...|.+...|+.++.++...|++++|..
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 5677888999999987 356789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 004093 342 LYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM 421 (774)
Q Consensus 342 iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p 421 (774)
.|++++...|. ...+|..++.++.+.|++++|..+|+++++..+.....+...+.. ... |+++.|..+|+.++...|
T Consensus 99 ~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~-~~~~~A~~~~~~~~~~~~ 175 (275)
T 1xnf_A 99 AFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQK-LDEKQAKEVLKQHFEKSD 175 (275)
T ss_dssp HHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHH-HCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHh-cCHHHHHHHHHHHHhcCC
Confidence 99999998886 468999999999999999999999999998665555444433333 343 899999999999999988
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 422 HEPAYILEYADFLSRLNDDRNIRALFERALSSLPPE--ESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 422 ~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e--~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
++...+ ..+.++...++.++|...|++++...+.. ....+|..........|+.+.+...++++.+..|
T Consensus 176 ~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 176 KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 876555 46667778888899999999999865521 2257888888888899999999999999998877
No 47
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.56 E-value=1e-13 Score=164.79 Aligned_cols=173 Identities=16% Similarity=0.134 Sum_probs=163.0
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHH
Q 004093 281 YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQ 360 (774)
Q Consensus 281 ~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~ 360 (774)
.+|+++++|.+++..+.+.|++++|++.|++|++..|++...|+.+|.++...|++++|...|+++++.+|+ ...+|..
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999999999999997 6899999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCh
Q 004093 361 FIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDD 440 (774)
Q Consensus 361 ~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~ 440 (774)
++..+.+.|++++|++.|++|++..+....+|.+++.+.... |++++|.+.|+++++..|+++..+..++..+..++++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS-GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 999999999999999999999998777899999999987775 9999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCC
Q 004093 441 RNIRALFERALSSLP 455 (774)
Q Consensus 441 ~~Ar~lfEraL~~~p 455 (774)
++|...|+++++..+
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999997543
No 48
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.4e-12 Score=132.82 Aligned_cols=177 Identities=11% Similarity=-0.060 Sum_probs=159.2
Q ss_pred hHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 004093 268 NKRIIFTYEQCLMYLYHY-------PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAK 340 (774)
Q Consensus 268 ~~r~~~~yeraL~~~p~~-------~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~ 340 (774)
.+.+...|++++...|.+ ..+|+.++..+...|++++|.+.|++++...|. +..+...|++++|.
T Consensus 54 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 54 YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKEL 125 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHH
Confidence 456677888888887766 799999999999999999999999999999887 34556677889999
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Q 004093 341 KLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF 420 (774)
Q Consensus 341 ~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~ 420 (774)
..|++++...+. ...+|..++..+...|++++|...|+++++..+....+|...+.+.... |+++.|.+.|+++++..
T Consensus 126 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 126 KKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL-MSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhC
Confidence 999999998876 5689999999999999999999999999997777789999999887775 99999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 004093 421 MHEPAYILEYADFLSRLNDDRNIRALFERALSSL 454 (774)
Q Consensus 421 p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~ 454 (774)
|+++..+...+..+...|++++|...|+++++..
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999876
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=4.5e-13 Score=130.45 Aligned_cols=159 Identities=12% Similarity=-0.004 Sum_probs=148.2
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
+..+.++..|++++..+|++..+|+.++..+.+.|++++|...+++++...|.+...+..++.++...++++.+...+++
T Consensus 19 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 98 (184)
T 3vtx_A 19 GDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQR 98 (184)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHH
Q 004093 346 LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPA 425 (774)
Q Consensus 346 ~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~ 425 (774)
++...|. ...+|..++..+.+.|++++|...|+++++..+....+|...+.+.... |++++|++.|+++++..|+++.
T Consensus 99 a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 99 AIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK-GLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC-CCHHHHHHHHHHHHhCCccCHH
Confidence 9999887 5789999999999999999999999999998777899999999987765 9999999999999999887665
Q ss_pred H
Q 004093 426 Y 426 (774)
Q Consensus 426 l 426 (774)
+
T Consensus 177 ~ 177 (184)
T 3vtx_A 177 Y 177 (184)
T ss_dssp H
T ss_pred H
Confidence 4
No 50
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.53 E-value=6.2e-13 Score=134.37 Aligned_cols=198 Identities=8% Similarity=0.011 Sum_probs=148.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 004093 283 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP-DSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQF 361 (774)
Q Consensus 283 p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P-~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~ 361 (774)
+.+++.|+..+..+...|++++|++.|++++...| .+...++.++..+...|++++|...|+++++..|. ...+|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 45678888888888888999999999999998888 78888888888888889999999999999988886 57788888
Q ss_pred HHHHHHhcCHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--CHHHHHHHHH
Q 004093 362 IRFLRRTEGVEAARKYFLDARKSPNFTY-------HVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH--EPAYILEYAD 432 (774)
Q Consensus 362 a~~~~r~~~~~~Ar~if~~al~~~~~~~-------~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~--~~~l~~~ya~ 432 (774)
+..+...|++++|...|+++++..+... .+|...+.+.... |+++.|...|+++++..|+ ++..+...+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA-GNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh-ccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 8888888999999999998888655555 5577777766664 8899999999999988888 7777777777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 433 FLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 433 ~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
.+...| +.+++++....+.. ...+. ...+...|.++.+...++++.+..|
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~~~--~~~~~--~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLASSN--KEKYA--SEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTTTC--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHH-----HHHHHHHHhcccCC--HHHHH--HHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 765443 44455655543311 11111 1123334556677777777777776
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=5.7e-13 Score=137.53 Aligned_cols=204 Identities=13% Similarity=0.066 Sum_probs=173.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC--CCcHHHHHHHH
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSV--NTTALAHIQFI 362 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~--~~~~~~~~~~a 362 (774)
++++++.+|..+...|++++|+..|++++...|.+...|+.++.++...|++++|...|++++.... .....+|..++
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999432 22355799999
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhH
Q 004093 363 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRN 442 (774)
Q Consensus 363 ~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~ 442 (774)
.++...|++++|...|+++++..+....+|...+.+.... |+++.|.+.|+++++..|+++..+...+......+++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK-GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT-TCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-cCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997777788999999887775 999999999999999999999999888844455569999
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHcc
Q 004093 443 IRALFERALSSLPPEESIEVWKRFTQFEQMYGD---LDSTLKVEQRRKEALS 491 (774)
Q Consensus 443 Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd---~~~i~kv~~R~~~~~p 491 (774)
|..+|+++++..|. ....|..........|+ .+.+...++++.+...
T Consensus 161 A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 161 ADSSFVKVLELKPN--IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp HHHHHHHHHHHSTT--CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCcc--chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 99999999998883 34455555555556677 6678888888888875
No 52
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.49 E-value=2.4e-10 Score=129.67 Aligned_cols=340 Identities=11% Similarity=0.022 Sum_probs=241.7
Q ss_pred CCCHHHHHHHHHHhc-----cCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccC
Q 004093 20 KYNVETAEILANSAL-----HLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMA----VNNDDATKQLFSRCLLIC 90 (774)
Q Consensus 20 P~d~~~W~~l~~~~~-----~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~----~~n~~~a~~ifeRaL~~~ 90 (774)
..+.+++..++..+. .+++++|...|+++... .+ ...+..++.++.. .+++++|...|++++..
T Consensus 72 ~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 144 (490)
T 2xm6_A 72 QGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GL----PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ- 144 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence 478899999988654 45899999999999875 56 7889999999988 78999999999999875
Q ss_pred CCHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHH
Q 004093 91 LQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQR 170 (774)
Q Consensus 91 p~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqr 170 (774)
.+...+..+......- .....+.+++.+.|+++++. .....|..+..+......+ .++.++|.+.|++
T Consensus 145 ~~~~a~~~Lg~~y~~g--~g~~~d~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~-----~~~~~~A~~~~~~ 212 (490)
T 2xm6_A 145 GRDSGQQSMGDAYFEG--DGVTRDYVMAREWYSKAAEQ-----GNVWSCNQLGYMYSRGLGV-----ERNDAISAQWYRK 212 (490)
T ss_dssp TCHHHHHHHHHHHHHT--SSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSS-----CCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHhcCCCC-----CcCHHHHHHHHHH
Confidence 3556666666554431 11134688999999988874 2456777776665432110 3578899999999
Q ss_pred HHcccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHH
Q 004093 171 AVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKR 250 (774)
Q Consensus 171 al~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~ 250 (774)
++..... ...+.--.-+.... ...+++..|...+++ .+.. +. ...+ .+..
T Consensus 213 a~~~~~~--~a~~~lg~~y~~g~----------g~~~~~~~A~~~~~~------a~~~--------~~--~~a~--~~lg 262 (490)
T 2xm6_A 213 SATSGDE--LGQLHLADMYYFGI----------GVTQDYTQSRVLFSQ------SAEQ--------GN--SIAQ--FRLG 262 (490)
T ss_dssp HHHTTCH--HHHHHHHHHHHHTS----------SSCCCHHHHHHHHHH------HHTT--------TC--HHHH--HHHH
T ss_pred HHHCCCH--HHHHHHHHHHHcCC----------CCCCCHHHHHHHHHH------HHHC--------CC--HHHH--HHHH
Confidence 9965321 11110000000000 012456666655543 3321 00 0111 1211
Q ss_pred HHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004093 251 LLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKS-----GSIDAAIKVFQRALKALPDSEMLRYA 325 (774)
Q Consensus 251 yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~-----g~~e~A~~v~erAl~~~P~~~~l~~~ 325 (774)
. .+..+.. . ....+.++..|++++.. .+++.++.++.++... +++++|...|+++++. .+...++.
T Consensus 263 ~-~y~~g~~--~--~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 333 (490)
T 2xm6_A 263 Y-ILEQGLA--G--AKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQAN 333 (490)
T ss_dssp H-HHHHTTT--S--SCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred H-HHHCCCC--C--CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHH
Confidence 1 1233321 1 24567888999999865 6889999999999987 8999999999999986 45677888
Q ss_pred HHHHHHHhC---CHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004093 326 FAELEESRG---AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR----TEGVEAARKYFLDARKSPNFTYHVYVAYALM 398 (774)
Q Consensus 326 ~a~l~e~~g---~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r----~~~~~~Ar~if~~al~~~~~~~~~~i~~A~l 398 (774)
++.++...| ++++|...|+++++.. ...++..++.++.. .+++++|...|+++++.. ...++..++.+
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~ 408 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEI 408 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Confidence 999888766 7899999999999874 47899999999988 799999999999999875 47888888887
Q ss_pred HHh---cCCCHHHHHHHHHHHHHHcCC
Q 004093 399 AFC---QDKDPKLAHNVFEAGLKRFMH 422 (774)
Q Consensus 399 E~~---~~gd~~~A~~ife~al~~~p~ 422 (774)
... ..+++++|...|+++++..++
T Consensus 409 y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 409 YYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 655 148999999999999999855
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=2.1e-12 Score=146.66 Aligned_cols=181 Identities=9% Similarity=-0.017 Sum_probs=165.9
Q ss_pred hch-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---------CC
Q 004093 266 SSN-KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESR---------GA 335 (774)
Q Consensus 266 ~~~-~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~---------g~ 335 (774)
+.. +.+...|++++..+|.+.++|+.++..+...|++++|++.|++|++..|+ ...|..++.++... |+
T Consensus 116 g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~ 194 (474)
T 4abn_A 116 PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRH 194 (474)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhh
Confidence 345 77889999999999999999999999999999999999999999999999 68899999999999 99
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh--------cCHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCC
Q 004093 336 IAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT--------EGVEAARKYFLDARKSPN---FTYHVYVAYALMAFCQDK 404 (774)
Q Consensus 336 ~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~--------~~~~~Ar~if~~al~~~~---~~~~~~i~~A~lE~~~~g 404 (774)
+++|...|+++++..|. ...+|..++..+... +++++|...|+++++..+ ....+|..++.+.... |
T Consensus 195 ~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~-g 272 (474)
T 4abn_A 195 VMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYE-E 272 (474)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHc-C
Confidence 99999999999999987 678999999999998 999999999999999665 6799999999987775 9
Q ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004093 405 DPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFER 449 (774)
Q Consensus 405 d~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEr 449 (774)
+++.|.+.|+++++..|+++..+...+..+..+|++++|...+++
T Consensus 273 ~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 273 SYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999988888887765544
No 54
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=2.6e-12 Score=123.35 Aligned_cols=168 Identities=13% Similarity=0.055 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 004093 286 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 365 (774)
Q Consensus 286 ~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~ 365 (774)
..+|+..+..+...|++++|+..|++++...|.+...++.++.++...|++++|...|+++++..+. ...+|..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 4677788888888999999999999999888988888888899988999999999999999988776 567888888888
Q ss_pred HHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHH
Q 004093 366 RRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRA 445 (774)
Q Consensus 366 ~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~ 445 (774)
...+++++|..+|+++++..+....++...+.+.... |+++.|.++|+++++..|+++..+..++..+...|++++|..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL-GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 8889999999999988887666678888887776664 888999999999988888888888888888888888889998
Q ss_pred HHHHHHhcCC
Q 004093 446 LFERALSSLP 455 (774)
Q Consensus 446 lfEraL~~~p 455 (774)
+|+++++..|
T Consensus 166 ~~~~~~~~~~ 175 (186)
T 3as5_A 166 HFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHcCC
Confidence 8888887544
No 55
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.47 E-value=1e-11 Score=131.63 Aligned_cols=182 Identities=12% Similarity=0.082 Sum_probs=152.0
Q ss_pred chHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMY--LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYE 344 (774)
Q Consensus 267 ~~~r~~~~yeraL~~--~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iye 344 (774)
..+.++..|++.+.. .|.++.+|+..+..+...|++++|++.|++ |.+..++...+.++...|++++|...|+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 356778889988875 599999999999999999999999999988 8888899999999999999999999999
Q ss_pred HHhcCCCCCcHHHH--HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Q 004093 345 SLLTDSVNTTALAH--IQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 422 (774)
Q Consensus 345 k~l~~~~~~~~~~~--~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~ 422 (774)
++++..|.. .... ..|..+....|++++|..+|+++++..+....+|...+.+.... |+++.|...|+++++..|+
T Consensus 155 ~~~~~~p~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 155 KMQDQDEDA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ-GRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhCcCc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC
Confidence 999887763 3222 23445555668899999999999987666788888888876665 8999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChhH-HHHHHHHHHhcCC
Q 004093 423 EPAYILEYADFLSRLNDDRN-IRALFERALSSLP 455 (774)
Q Consensus 423 ~~~l~~~ya~~l~~~gd~~~-Ar~lfEraL~~~p 455 (774)
+++.+..++.++...|+..+ +..+++++++..|
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 99999899988888888765 6789999998887
No 56
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.47 E-value=4.5e-12 Score=134.29 Aligned_cols=203 Identities=12% Similarity=0.025 Sum_probs=172.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHH
Q 004093 282 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA--LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 359 (774)
Q Consensus 282 ~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~--~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~ 359 (774)
.|........++.++...++.++|++.|++.+.. .|++..+++..+.++...|++++|..+|++ +. ...++.
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~-~~~~~~ 134 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GD-SLECMA 134 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CC-SHHHHH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CC-CHHHHH
Confidence 3445567778899999999999999999999986 699999999999999999999999999988 33 578999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHH--HHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 004093 360 QFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA--YALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRL 437 (774)
Q Consensus 360 ~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~--~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~ 437 (774)
..+.++.+.|+.++|.+.|+++++..+......+. +..+... .|+++.|..+|+++++.+|+++.++...+..+..+
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~-~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~ 213 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG-GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ 213 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 99999999999999999999999865554433333 2233222 37899999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHcccc
Q 004093 438 NDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLD-STLKVEQRRKEALSRT 493 (774)
Q Consensus 438 gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~-~i~kv~~R~~~~~pk~ 493 (774)
|++++|..+|+++|...| +....|.....+....|+.. .+..+.+++.+..|++
T Consensus 214 g~~~eA~~~l~~al~~~p--~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 214 GRWEAAEGVLQEALDKDS--GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp TCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999988 45677877787777889875 5788999999999943
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.43 E-value=7.5e-12 Score=128.95 Aligned_cols=187 Identities=12% Similarity=0.094 Sum_probs=155.6
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
+..+.+...|++++...|.+..+|..++..+...|++++|++.|++++...|.+...|+.++.++...|++++|..+|++
T Consensus 57 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 136 (275)
T 1xnf_A 57 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA 136 (275)
T ss_dssp TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC---
Q 004093 346 LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH--- 422 (774)
Q Consensus 346 ~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~--- 422 (774)
+++..|.. ...+. +.......|++++|...|++++...+.....+. .+.+... .++.+.|...++.++...+.
T Consensus 137 a~~~~~~~-~~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~ 212 (275)
T 1xnf_A 137 FYQDDPND-PFRSL-WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLG-NISEQTLMERLKADATDNTSLAE 212 (275)
T ss_dssp HHHHCTTC-HHHHH-HHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTT-SSCHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHhCCCC-hHHHH-HHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHH-hcCHHHHHHHHHHHhcccccccc
Confidence 99988873 33332 333446679999999999998875443333333 3333333 47888999999998876553
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCc
Q 004093 423 -EPAYILEYADFLSRLNDDRNIRALFERALSSLPP 456 (774)
Q Consensus 423 -~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~ 456 (774)
++..+...+.++...|++++|..+|++++...|.
T Consensus 213 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 213 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred cccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 3678889999999999999999999999998773
No 58
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.43 E-value=8.3e-12 Score=126.02 Aligned_cols=192 Identities=8% Similarity=-0.008 Sum_probs=157.7
Q ss_pred hchHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLY-HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYE 344 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p-~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iye 344 (774)
+..+.++..|++++...| .+..+|+.++..+...|++++|++.|++++...|.+...|+.++.++...|++++|...|+
T Consensus 21 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 100 (228)
T 4i17_A 21 KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLT 100 (228)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 346778899999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcH-------HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 004093 345 SLLTDSVNTTA-------LAHIQFIRFLRRTEGVEAARKYFLDARKSPNF--TYHVYVAYALMAFCQDKDPKLAHNVFEA 415 (774)
Q Consensus 345 k~l~~~~~~~~-------~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~--~~~~~i~~A~lE~~~~gd~~~A~~ife~ 415 (774)
++++..|. .. .+|...+..+...|++++|...|+++++..+. ...+|...+.+.+. .+..+++.
T Consensus 101 ~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~------~~~~~~~~ 173 (228)
T 4i17_A 101 EGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN------NGADVLRK 173 (228)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_pred HHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH------HHHHHHHH
Confidence 99999887 34 56888889999999999999999999998776 67888888776443 35566777
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 004093 416 GLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQ 468 (774)
Q Consensus 416 al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~ 468 (774)
+....+.+...+.. ......+.+++|+.+|+++++..|. ...++..+..
T Consensus 174 a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~ 222 (228)
T 4i17_A 174 ATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTLSPN--RTEIKQMQDQ 222 (228)
T ss_dssp HGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHH
Confidence 77766655443322 2233456789999999999998883 3444444433
No 59
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.42 E-value=8.6e-11 Score=121.95 Aligned_cols=210 Identities=9% Similarity=-0.016 Sum_probs=180.7
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAK----SGSIDAAIKVFQRALKALPDSEMLRYAFAELEES----RGAIAA 338 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~----~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~----~g~~e~ 338 (774)
..+.+...|++++. +.++..|+.++.++.. .+++++|.+.|++++... +...++.++.++.. .+++++
T Consensus 21 ~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~ 96 (273)
T 1ouv_A 21 DFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNK 96 (273)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHH
Confidence 45677899999998 7889999999999999 999999999999999874 78889999999999 999999
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cCCCHHHHHH
Q 004093 339 AKKLYESLLTDSVNTTALAHIQFIRFLRR----TEGVEAARKYFLDARKSPNFTYHVYVAYALMAFC---QDKDPKLAHN 411 (774)
Q Consensus 339 A~~iyek~l~~~~~~~~~~~~~~a~~~~r----~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~---~~gd~~~A~~ 411 (774)
|...|+++++.. ...++..++.++.. .+++++|...|+++++.. ....+..++.+... ..+++++|.+
T Consensus 97 A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~ 171 (273)
T 1ouv_A 97 ALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALA 171 (273)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 999999999875 46899999999999 999999999999999975 46777777777554 1489999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH----hCCHHHHHHHH
Q 004093 412 VFEAGLKRFMHEPAYILEYADFLSR----LNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQM----YGDLDSTLKVE 483 (774)
Q Consensus 412 ife~al~~~p~~~~l~~~ya~~l~~----~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~----~Gd~~~i~kv~ 483 (774)
.|+++++. +++..+..++.++.. .+++++|..+|+++++..+ ...+.....+... .|+.+.+.+.+
T Consensus 172 ~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~ 245 (273)
T 1ouv_A 172 SYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN----GGGCFNLGAMQYNGEGVTRNEKQAIENF 245 (273)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC----HHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 99999986 457778888889988 9999999999999999754 3444455555555 78899999999
Q ss_pred HHHHHHcc
Q 004093 484 QRRKEALS 491 (774)
Q Consensus 484 ~R~~~~~p 491 (774)
+++.+.-|
T Consensus 246 ~~a~~~~~ 253 (273)
T 1ouv_A 246 KKGCKLGA 253 (273)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCC
Confidence 99998877
No 60
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.41 E-value=7.3e-12 Score=129.46 Aligned_cols=176 Identities=14% Similarity=0.027 Sum_probs=147.8
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC--c
Q 004093 280 MYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT--T 354 (774)
Q Consensus 280 ~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~---~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~--~ 354 (774)
...+.+++.++..+..+...|++++|+..|++++...|.+ ...++.+|.++...|++++|...|+++++..|.. .
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4568889999999999999999999999999999999988 8899999999999999999999999999987742 3
Q ss_pred HHHHHHHHHHHHH--------hcCHHHHHHHHHHHhcCCCCCHHHH-----------------HHHHHHHHhcCCCHHHH
Q 004093 355 ALAHIQFIRFLRR--------TEGVEAARKYFLDARKSPNFTYHVY-----------------VAYALMAFCQDKDPKLA 409 (774)
Q Consensus 355 ~~~~~~~a~~~~r--------~~~~~~Ar~if~~al~~~~~~~~~~-----------------i~~A~lE~~~~gd~~~A 409 (774)
..++..++..+.. .|++++|...|+++++..+....++ ...+.+.+.. |+++.|
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A 167 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERR-ELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHH
Confidence 5678888888888 9999999999999998544332222 5556665554 999999
Q ss_pred HHHHHHHHHHcCCC---HHHHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCc
Q 004093 410 HNVFEAGLKRFMHE---PAYILEYADFLSRL----------NDDRNIRALFERALSSLPP 456 (774)
Q Consensus 410 ~~ife~al~~~p~~---~~l~~~ya~~l~~~----------gd~~~Ar~lfEraL~~~p~ 456 (774)
+..|+++++.+|++ +..+...+..+..+ |++++|..+|++++...|.
T Consensus 168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 99999999999884 45677777777765 8889999999999998883
No 61
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.40 E-value=5.9e-12 Score=149.68 Aligned_cols=176 Identities=14% Similarity=0.086 Sum_probs=161.2
Q ss_pred HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHH
Q 004093 314 KALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYV 393 (774)
Q Consensus 314 ~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i 393 (774)
..+|++...+..+|.++..+|++++|...|+++++..|+ ...+|..++..+.+.|++++|...|++|++..+....+|.
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 468999999999999999999999999999999999997 6899999999999999999999999999998777899999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHh
Q 004093 394 AYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMY 473 (774)
Q Consensus 394 ~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~ 473 (774)
+++.+.... |+++.|++.|+++++..|+++..+..++..+..+|++++|...|++||+..| +....|..+.......
T Consensus 82 nLg~~l~~~-g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P--~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 82 NMGNTLKEM-QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP--DFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHhhhhhHHHhc
Confidence 999987775 9999999999999999999999999999999999999999999999999988 5567788888888889
Q ss_pred CCHHHHHHHHHHHHHHcccc
Q 004093 474 GDLDSTLKVEQRRKEALSRT 493 (774)
Q Consensus 474 Gd~~~i~kv~~R~~~~~pk~ 493 (774)
|+++.+...++++.+..++.
T Consensus 159 g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 159 CDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp TCCTTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhChhH
Confidence 99999999999999888753
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=1.7e-11 Score=133.49 Aligned_cols=149 Identities=12% Similarity=-0.003 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhCCHH
Q 004093 270 RIIFTYEQCLMY------LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE------MLRYAFAELEESRGAIA 337 (774)
Q Consensus 270 r~~~~yeraL~~------~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~------~l~~~~a~l~e~~g~~e 337 (774)
.+...|++++.. .+....+|..++.++...|++++|...|++++...+... ..+..++.++...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 344555555554 233456788889999999999999999999998755332 26777888888889999
Q ss_pred HHHHHHHHHhcCCCCC-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHhcCCCH
Q 004093 338 AAKKLYESLLTDSVNT-----TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF------TYHVYVAYALMAFCQDKDP 406 (774)
Q Consensus 338 ~A~~iyek~l~~~~~~-----~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~------~~~~~i~~A~lE~~~~gd~ 406 (774)
+|...|++++...+.. ...++..++.++...|++++|...|+++++.... ...++...+.+.... |++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~ 323 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL-GNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-CCH
Confidence 9988888888654321 1346667777777777777777777777653111 134455555554443 677
Q ss_pred HHHHHHHHHHHHH
Q 004093 407 KLAHNVFEAGLKR 419 (774)
Q Consensus 407 ~~A~~ife~al~~ 419 (774)
+.|.+.|+++++.
T Consensus 324 ~~A~~~~~~al~~ 336 (406)
T 3sf4_A 324 DQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776664
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=8.6e-12 Score=130.61 Aligned_cols=208 Identities=12% Similarity=0.062 Sum_probs=131.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC----
Q 004093 283 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA--------LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS---- 350 (774)
Q Consensus 283 p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~--------~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~---- 350 (774)
|....+|..++..+...|++++|..+|++++.. .|.....+..++.++...|++++|...|++++...
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 444566666666666677777777777777663 34445556666666666677777777776666542
Q ss_pred -C--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC------C--CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 004093 351 -V--NTTALAHIQFIRFLRRTEGVEAARKYFLDARKS------P--NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR 419 (774)
Q Consensus 351 -~--~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~------~--~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~ 419 (774)
+ .....++..++..+...|++++|...|+++++. + +....++...+.+.... |+++.|..+|+++++.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ-GKYEEVEYYYQRALEI 182 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 1 112345666666666667777777777666653 1 11234455555554443 6677777777776665
Q ss_pred --------cCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC------------------------------------
Q 004093 420 --------FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP------------------------------------ 455 (774)
Q Consensus 420 --------~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p------------------------------------ 455 (774)
.+.....+..++.++...|++++|..+|++++...+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 233334555666666666777777777777665311
Q ss_pred -----------chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 456 -----------PEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 456 -----------~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
......+|..+.......|+.+.+.++++++.+..|
T Consensus 263 a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 263 YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp CC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 124467788888888889999999999999998876
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.38 E-value=6.9e-12 Score=137.80 Aligned_cols=226 Identities=9% Similarity=-0.005 Sum_probs=185.2
Q ss_pred hchHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCC
Q 004093 266 SSNKRIIFTYEQCLMYLYHYP----DIWYDYATWNAKSGSIDAAIKVFQRALKA------LPDSEMLRYAFAELEESRGA 335 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~----~iW~~ya~~l~~~g~~e~A~~v~erAl~~------~P~~~~l~~~~a~l~e~~g~ 335 (774)
+..+.++..|++++...|.++ .+|+.++..+...|++++|...|++++.. .|.....+..++.++...|+
T Consensus 62 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 141 (411)
T 4a1s_A 62 GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGR 141 (411)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 346778899999999999987 58999999999999999999999999987 35556788899999999999
Q ss_pred HHHHHHHHHHHhcCCC-----CCcHHHHHHHHHHHHHhcC-----------------HHHHHHHHHHHhcC------CCC
Q 004093 336 IAAAKKLYESLLTDSV-----NTTALAHIQFIRFLRRTEG-----------------VEAARKYFLDARKS------PNF 387 (774)
Q Consensus 336 ~e~A~~iyek~l~~~~-----~~~~~~~~~~a~~~~r~~~-----------------~~~Ar~if~~al~~------~~~ 387 (774)
+++|...|++++.... .....++..++.++...|+ +++|...|+++++. ...
T Consensus 142 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (411)
T 4a1s_A 142 FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGA 221 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999997621 1134688889999999999 99999999998763 112
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCc----h
Q 004093 388 TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP------AYILEYADFLSRLNDDRNIRALFERALSSLPP----E 457 (774)
Q Consensus 388 ~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~------~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~----e 457 (774)
...++...+.+.... |+++.|.+.|+++++..+... ..+...+.++...|++++|..+|++++...+. .
T Consensus 222 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 300 (411)
T 4a1s_A 222 QGRACGNLGNTYYLL-GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE 300 (411)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence 345677777776664 999999999999999765322 26678888999999999999999999985441 1
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc
Q 004093 458 ESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 458 ~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk 492 (774)
....+|..........|+.+.+...++++.+..++
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 23567777777888899999999999999998874
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=1.6e-11 Score=129.14 Aligned_cols=221 Identities=12% Similarity=0.019 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCC--
Q 004093 270 RIIFTYEQCLMY------LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS------EMLRYAFAELEESRGA-- 335 (774)
Q Consensus 270 r~~~~yeraL~~------~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~------~~l~~~~a~l~e~~g~-- 335 (774)
.+...|++++.. .+....+|..++..+...|++++|...|++++...+.. ...+..++.++...|+
T Consensus 61 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 140 (338)
T 3ro2_A 61 KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSF 140 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccc
Confidence 344445555443 23445778888999999999999999999998875532 3367778888888888
Q ss_pred ------------------HHHHHHHHHHHhcCCC-----CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC------
Q 004093 336 ------------------IAAAKKLYESLLTDSV-----NTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN------ 386 (774)
Q Consensus 336 ------------------~e~A~~iyek~l~~~~-----~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~------ 386 (774)
+++|...|++++.... .....++..++..+...|++++|...|+++++..+
T Consensus 141 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 220 (338)
T 3ro2_A 141 GCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 220 (338)
T ss_dssp SSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH
Confidence 8899999888876421 11235778888888889999999999999886311
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCc----
Q 004093 387 FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE------PAYILEYADFLSRLNDDRNIRALFERALSSLPP---- 456 (774)
Q Consensus 387 ~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~------~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~---- 456 (774)
....++...+.+.... |+++.|.++|++++...+.. ...+...+..+...|++++|..+|++++...+.
T Consensus 221 ~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFL-GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 1233666677765564 89999999999999875433 456677888889999999999999999875431
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 457 EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 457 e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
.....+|..........|+.+.+...++++.+..+
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 12245677777777789999999999999988876
No 66
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.35 E-value=6.2e-12 Score=115.95 Aligned_cols=111 Identities=19% Similarity=0.309 Sum_probs=95.5
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 280 MYLYHYPDIWYDYATWNAKSGSI------DAAIKVFQRALKALPDS--------EMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 280 ~~~p~~~~iW~~ya~~l~~~g~~------e~A~~v~erAl~~~P~~--------~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
...|++++.|..|+..+++.|+. ++.+++|+||+...|.. ..+|+.||.+++. ++.++|+++|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei-~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAI-QEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHH-HCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence 45799999999999999999998 99999999999998854 4689999998654 899999999999
Q ss_pred HhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHH
Q 004093 346 LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVY 392 (774)
Q Consensus 346 ~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~ 392 (774)
++..+.. ++.+|+.|++|+.|+|++++||+++.+|+..++...+..
T Consensus 86 a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 86 ARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 9987554 799999999999999999999999999999766544433
No 67
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.33 E-value=5.2e-10 Score=116.00 Aligned_cols=197 Identities=11% Similarity=0.004 Sum_probs=167.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHhcCCCCCcHHH
Q 004093 282 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEES----RGAIAAAKKLYESLLTDSVNTTALA 357 (774)
Q Consensus 282 ~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~----~g~~e~A~~iyek~l~~~~~~~~~~ 357 (774)
.|.++..|+.++..+...|++++|.+.|++++. |.+...++.++.++.. .+++++|...|+++++.. ...+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 467889999999999999999999999999999 7888899999999999 999999999999999875 4688
Q ss_pred HHHHHHHHHH----hcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHcCCCHHHHHHH
Q 004093 358 HIQFIRFLRR----TEGVEAARKYFLDARKSPNFTYHVYVAYALMAFC---QDKDPKLAHNVFEAGLKRFMHEPAYILEY 430 (774)
Q Consensus 358 ~~~~a~~~~r----~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~---~~gd~~~A~~ife~al~~~p~~~~l~~~y 430 (774)
+..++.++.. .+++++|...|+++++.. ...++..++.+... ..+++++|.+.|+++++.. ++..+..+
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l 152 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHH
Confidence 9999999999 999999999999999874 57888888887655 1389999999999999864 56777788
Q ss_pred HHHHHh----cCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHcc
Q 004093 431 ADFLSR----LNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQM----YGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 431 a~~l~~----~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~----~Gd~~~i~kv~~R~~~~~p 491 (774)
+.++.. .+++++|..+|+++++... ...+..+...... .|+.+.+...++++.+.-+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLKD----SPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 888887 8999999999999998733 3445555555556 7999999999999887643
No 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=1.2e-10 Score=111.63 Aligned_cols=168 Identities=12% Similarity=0.005 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004093 320 EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMA 399 (774)
Q Consensus 320 ~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE 399 (774)
..+++..+..+...|++++|...|++++...+. ...+|..++..+...|++++|...|+++++..+....++...+.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 456778899999999999999999999998886 5788999999999999999999999999987777789999988887
Q ss_pred HhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHH
Q 004093 400 FCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDST 479 (774)
Q Consensus 400 ~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i 479 (774)
... |+++.|.++|+++++..|+++..+..++..+...|++++|..+|++++...| .....|..+.......|+.+.+
T Consensus 87 ~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQV-QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP--NEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHh-cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCHHHH
Confidence 665 9999999999999999999999999999999999999999999999999877 3467787888888889999999
Q ss_pred HHHHHHHHHHcc
Q 004093 480 LKVEQRRKEALS 491 (774)
Q Consensus 480 ~kv~~R~~~~~p 491 (774)
.+..+++.+..|
T Consensus 164 ~~~~~~~~~~~~ 175 (186)
T 3as5_A 164 LPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC
Confidence 999999999988
No 69
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.33 E-value=2.7e-12 Score=121.84 Aligned_cols=103 Identities=11% Similarity=-0.005 Sum_probs=49.9
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
..++++..|++++...|.++..|+.++.++.+.|++++|++.|+++++..|++...|+.++.++...|++++|...|+++
T Consensus 12 ~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 91 (150)
T 4ga2_A 12 DVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRS 91 (150)
T ss_dssp HHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 33444444555554444444555555555555555555555555555555555555555555555555555555555555
Q ss_pred hcCCCCCcHHHHHHHHHHHHHhcC
Q 004093 347 LTDSVNTTALAHIQFIRFLRRTEG 370 (774)
Q Consensus 347 l~~~~~~~~~~~~~~a~~~~r~~~ 370 (774)
++..|. ...+|..++.++.+.++
T Consensus 92 l~~~p~-~~~~~~~la~~~~~~~~ 114 (150)
T 4ga2_A 92 VELNPT-QKDLVLKIAELLCKNDV 114 (150)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHCS
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCC
Confidence 544443 23344444444333333
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.32 E-value=1.7e-11 Score=129.09 Aligned_cols=226 Identities=8% Similarity=-0.034 Sum_probs=181.0
Q ss_pred hchHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCC
Q 004093 266 SSNKRIIFTYEQCLMYLYHY----PDIWYDYATWNAKSGSIDAAIKVFQRALKA------LPDSEMLRYAFAELEESRGA 335 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~----~~iW~~ya~~l~~~g~~e~A~~v~erAl~~------~P~~~~l~~~~a~l~e~~g~ 335 (774)
+..+.+...|++++...|.+ ..+|..++..+...|++++|.+.|++++.. .|....++..++.++...|+
T Consensus 19 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 98 (338)
T 3ro2_A 19 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 98 (338)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC
Confidence 34577889999999999988 478889999999999999999999999876 23345678889999999999
Q ss_pred HHHHHHHHHHHhcCCCCC-----cHHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHhcC------
Q 004093 336 IAAAKKLYESLLTDSVNT-----TALAHIQFIRFLRRTEG--------------------VEAARKYFLDARKS------ 384 (774)
Q Consensus 336 ~e~A~~iyek~l~~~~~~-----~~~~~~~~a~~~~r~~~--------------------~~~Ar~if~~al~~------ 384 (774)
+++|...|++++...+.. ...++..++.++...|+ +++|...|++++..
T Consensus 99 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~ 178 (338)
T 3ro2_A 99 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD 178 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999998754321 13477888889999999 99999999988753
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCc--
Q 004093 385 PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE------PAYILEYADFLSRLNDDRNIRALFERALSSLPP-- 456 (774)
Q Consensus 385 ~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~------~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~-- 456 (774)
......++...+.+.... |+++.|...|+++++..+.. ...+...+..+...|++++|..+|++++...+.
T Consensus 179 ~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 112245677777776665 99999999999999864421 236678888899999999999999999985431
Q ss_pred --hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc
Q 004093 457 --EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 457 --e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk 492 (774)
.....++..........|+.+.+...++++.+..++
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 122566777777777899999999999999998873
No 71
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.32 E-value=8e-11 Score=117.81 Aligned_cols=169 Identities=9% Similarity=0.019 Sum_probs=123.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHhCCHHHHHHHHHHHhc
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYA----------------FAELEESRGAIAAAKKLYESLLT 348 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~----------------~a~l~e~~g~~e~A~~iyek~l~ 348 (774)
+.+.++..+..+...|++++|+..|++++...|++...|+. ++.++...|++++|...|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45666777777888888888888888888888888888877 88888888888888888888888
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCHH-H
Q 004093 349 DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ-DKDPKLAHNVFEAGLKRFMHEPA-Y 426 (774)
Q Consensus 349 ~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~-~gd~~~A~~ife~al~~~p~~~~-l 426 (774)
..|. ...+|..++.++...|++++|...|+++++..+....+|...+.+.+.. .++.+.+...|+.++. ++... .
T Consensus 83 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 83 KAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 8886 5778888888888888888888888888887666788888877764432 1223445555655543 22221 2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCc
Q 004093 427 ILEYADFLSRLNDDRNIRALFERALSSLPP 456 (774)
Q Consensus 427 ~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~ 456 (774)
+...+..+...|++++|...|+++++..|.
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 233344455578889999999999988884
No 72
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.32 E-value=2.5e-11 Score=132.21 Aligned_cols=226 Identities=8% Similarity=-0.031 Sum_probs=180.6
Q ss_pred hchHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhCC
Q 004093 266 SSNKRIIFTYEQCLMYLYHYP----DIWYDYATWNAKSGSIDAAIKVFQRALKAL------PDSEMLRYAFAELEESRGA 335 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~----~iW~~ya~~l~~~g~~e~A~~v~erAl~~~------P~~~~l~~~~a~l~e~~g~ 335 (774)
+..+.+...|++++...|.++ .+|..++..+...|++++|...|++++... |....++..++.++...|+
T Consensus 23 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 102 (406)
T 3sf4_A 23 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 102 (406)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCC
Confidence 345778899999999999874 689999999999999999999999998763 3335678889999999999
Q ss_pred HHHHHHHHHHHhcCCCCC-----cHHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHhcC------
Q 004093 336 IAAAKKLYESLLTDSVNT-----TALAHIQFIRFLRRTEG--------------------VEAARKYFLDARKS------ 384 (774)
Q Consensus 336 ~e~A~~iyek~l~~~~~~-----~~~~~~~~a~~~~r~~~--------------------~~~Ar~if~~al~~------ 384 (774)
+++|...|++++...+.. ...++..++.++...|+ ++.|...|++++..
T Consensus 103 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~ 182 (406)
T 3sf4_A 103 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGD 182 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999764421 23478888889999999 99999999998763
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCc--
Q 004093 385 PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP------AYILEYADFLSRLNDDRNIRALFERALSSLPP-- 456 (774)
Q Consensus 385 ~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~------~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~-- 456 (774)
......++...+.+.... |+++.|...|+++++..+... ..+...+..+...|++++|..+|++++...+.
T Consensus 183 ~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 261 (406)
T 3sf4_A 183 RAAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261 (406)
T ss_dssp HHHHHHHHHHHHHHHHHH-TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc
Confidence 112245677777776665 999999999999998754322 26678888899999999999999999975431
Q ss_pred --hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc
Q 004093 457 --EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 457 --e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk 492 (774)
.....+|..........|+.+.+...++++.+..++
T Consensus 262 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 122556777777777899999999999999988774
No 73
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.32 E-value=7.4e-11 Score=124.50 Aligned_cols=170 Identities=10% Similarity=0.025 Sum_probs=148.5
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHH
Q 004093 281 YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQ 360 (774)
Q Consensus 281 ~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~ 360 (774)
..|...+.++..+..+...|++++|...|++++...|++...++.++.++...|++++|..+|++++...|+ ....+..
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~ 190 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLV 190 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHH
Confidence 458999999999999999999999999999999999999999999999999999999999999999998885 3344444
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHhcC
Q 004093 361 FIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE--PAYILEYADFLSRLN 438 (774)
Q Consensus 361 ~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~--~~l~~~ya~~l~~~g 438 (774)
....+.+.++.+.|...|++++...+....+++.+|.+.... |+++.|...|+++++..|++ ...+..++.++...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~-g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQV-GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 444455677778889999999987777788999988886665 99999999999999999887 778889999999999
Q ss_pred ChhHHHHHHHHHHh
Q 004093 439 DDRNIRALFERALS 452 (774)
Q Consensus 439 d~~~Ar~lfEraL~ 452 (774)
+.+.|...|+++|.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999999885
No 74
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.31 E-value=1.4e-11 Score=146.10 Aligned_cols=181 Identities=10% Similarity=-0.117 Sum_probs=148.5
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 004093 281 YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRAL--------KALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 281 ~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl--------~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~ 352 (774)
.+|.++..++..+ ...|++++|++.|++++ ...|++..+|+..+..+...|++++|...|+++++..|.
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 4567777776655 66788899999999998 788888888888898888889999999999999988886
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 004093 353 TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYAD 432 (774)
Q Consensus 353 ~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~ 432 (774)
...+|..++..+...|++++|...|++|++..+....+|...+.+.... |+++. .+.|+++++..|+++..+...+.
T Consensus 466 -~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~-g~~~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 466 -RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELA-GNTDE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH-TCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 5788888888888899999999999999887666788888888876665 88888 88999999999998888888888
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 004093 433 FLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQF 469 (774)
Q Consensus 433 ~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~f 469 (774)
.+..+|++++|...|+++++..| .....|......
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l~P--~~~~a~~~~~~~ 577 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPTSR--HFTTARLTSAVT 577 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTST--THHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhcccCc--ccHHHHHHHHHH
Confidence 88999999999999999988877 344555444443
No 75
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.31 E-value=9.6e-12 Score=147.62 Aligned_cols=171 Identities=11% Similarity=-0.021 Sum_probs=155.4
Q ss_pred hchHHHHHHHHHHH--------HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Q 004093 266 SSNKRIIFTYEQCL--------MYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIA 337 (774)
Q Consensus 266 ~~~~r~~~~yeraL--------~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e 337 (774)
+..+.++..|++++ ..+|.+.++|+..+..+...|++++|++.|+++++..|++..+|+.++.++...|+++
T Consensus 405 ~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 484 (681)
T 2pzi_A 405 SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYD 484 (681)
T ss_dssp CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHH
T ss_pred cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHH
Confidence 45678889999999 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 004093 338 AAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGL 417 (774)
Q Consensus 338 ~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al 417 (774)
+|...|+++++..|. ...+|..++..+.+.|++++ ...|++|++..+....+|...+.+.... |+++.|.+.|++++
T Consensus 485 ~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al 561 (681)
T 2pzi_A 485 SATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAE-GDRVGAVRTLDEVP 561 (681)
T ss_dssp HHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHc-CCHHHHHHHHHhhc
Confidence 999999999999997 57899999999999999999 9999999997777799999999987775 99999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHhcCC
Q 004093 418 KRFMHEPAYILEYADFLSRLND 439 (774)
Q Consensus 418 ~~~p~~~~l~~~ya~~l~~~gd 439 (774)
+..|++...+...+..+...+.
T Consensus 562 ~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 562 PTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TTSTTHHHHHHHHHHHTC----
T ss_pred ccCcccHHHHHHHHHHHHccCC
Confidence 9999999999888888776655
No 76
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.30 E-value=1.7e-11 Score=126.15 Aligned_cols=217 Identities=12% Similarity=0.050 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHh-------c-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHH
Q 004093 269 KRIIFTYEQCLMY-------L-YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKAL--------PDSEMLRYAFAELEES 332 (774)
Q Consensus 269 ~r~~~~yeraL~~-------~-p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~--------P~~~~l~~~~a~l~e~ 332 (774)
..+...|++++.. . |....+|..++.++...|++++|...|++++... |.....+..++.++..
T Consensus 18 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (283)
T 3edt_B 18 GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 97 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 3345566666653 2 5678899999999999999999999999999873 4556778899999999
Q ss_pred hCCHHHHHHHHHHHhcCC--------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC--------CCCCHHHHHHHH
Q 004093 333 RGAIAAAKKLYESLLTDS--------VNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS--------PNFTYHVYVAYA 396 (774)
Q Consensus 333 ~g~~e~A~~iyek~l~~~--------~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~--------~~~~~~~~i~~A 396 (774)
.|++++|...|++++... +. ...++..++.++...|++++|..+|+++++. .+....++...+
T Consensus 98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 176 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEIREKVLGKFHPD-VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 999999999999999862 22 4568889999999999999999999999875 333466777888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHhcCChhH------HHHHHHHHHhcCCchhHHH
Q 004093 397 LMAFCQDKDPKLAHNVFEAGLKRF---------MHEPAYILEYADFLSRLNDDRN------IRALFERALSSLPPEESIE 461 (774)
Q Consensus 397 ~lE~~~~gd~~~A~~ife~al~~~---------p~~~~l~~~ya~~l~~~gd~~~------Ar~lfEraL~~~p~e~~~~ 461 (774)
.+.... |+++.|..+|+++++.. +....+|.....+....+.... +..+++...... .....
T Consensus 177 ~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 253 (283)
T 3edt_B 177 SCYLKQ-GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS--PTVNT 253 (283)
T ss_dssp HHHHHH-TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC--HHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC--HHHHH
Confidence 876665 99999999999999862 2334455555555554443332 222222222222 24456
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004093 462 VWKRFTQFEQMYGDLDSTLKVEQRRKEA 489 (774)
Q Consensus 462 lw~~~~~fE~~~Gd~~~i~kv~~R~~~~ 489 (774)
.|..+..+....|+.+.+.++++++.+.
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777889999999988888764
No 77
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.30 E-value=2.1e-11 Score=133.98 Aligned_cols=224 Identities=10% Similarity=0.004 Sum_probs=181.8
Q ss_pred chHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhC
Q 004093 267 SNKRIIFTYEQCLMY------LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA------LPDSEMLRYAFAELEESRG 334 (774)
Q Consensus 267 ~~~r~~~~yeraL~~------~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~------~P~~~~l~~~~a~l~e~~g 334 (774)
..+.+...|++++.. .+....+|..++.++...|++++|...|++++.. .+.....+..++.++...|
T Consensus 101 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 101 DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence 356678889999887 5777899999999999999999999999999987 3444667888999999999
Q ss_pred C-----------------HHHHHHHHHHHhcCCC-----CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC-----
Q 004093 335 A-----------------IAAAKKLYESLLTDSV-----NTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF----- 387 (774)
Q Consensus 335 ~-----------------~e~A~~iyek~l~~~~-----~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~----- 387 (774)
+ +++|...|++++.... .....+|..++..+...|++++|...|+++++..+.
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 9 9999999999886431 112457888899999999999999999999874211
Q ss_pred -CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCc----
Q 004093 388 -TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE------PAYILEYADFLSRLNDDRNIRALFERALSSLPP---- 456 (774)
Q Consensus 388 -~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~------~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~---- 456 (774)
...++...+.+.... |+++.|...|++++...+.. ...+..++.++...|++++|..+|++++...+.
T Consensus 261 ~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 261 AERRANSNLGNSHIFL-GQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 133677777776554 99999999999999976532 456778899999999999999999999985431
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 457 EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 457 e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
.....++..+.......|+.+.+...++++.+.++
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 12345777777777789999999999999999987
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.30 E-value=3.1e-11 Score=126.36 Aligned_cols=189 Identities=15% Similarity=0.050 Sum_probs=157.0
Q ss_pred hchHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMY--------LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKAL--------PDSEMLRYAFAEL 329 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~--------~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~--------P~~~~l~~~~a~l 329 (774)
+..+.+..+|++++.. .+....+|..++..+...|++++|...|++++... |.....+..++.+
T Consensus 41 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 120 (311)
T 3nf1_A 41 GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVL 120 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 3457788899999984 56678899999999999999999999999999873 4556778899999
Q ss_pred HHHhCCHHHHHHHHHHHhcCC-----CC--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC--------CCCCHHHHHH
Q 004093 330 EESRGAIAAAKKLYESLLTDS-----VN--TTALAHIQFIRFLRRTEGVEAARKYFLDARKS--------PNFTYHVYVA 394 (774)
Q Consensus 330 ~e~~g~~e~A~~iyek~l~~~-----~~--~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~--------~~~~~~~~i~ 394 (774)
+...|++++|...|+++++.. +. ....++..++.++...|++++|..+|+++++. .+....++..
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (311)
T 3nf1_A 121 YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNN 200 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999999763 11 13467888999999999999999999999875 2333566777
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHc-------------------------------------------------CCCHH
Q 004093 395 YALMAFCQDKDPKLAHNVFEAGLKRF-------------------------------------------------MHEPA 425 (774)
Q Consensus 395 ~A~lE~~~~gd~~~A~~ife~al~~~-------------------------------------------------p~~~~ 425 (774)
.+.+.... |+++.|.++|+++++.. |..+.
T Consensus 201 la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 279 (311)
T 3nf1_A 201 LASCYLKQ-GKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTT 279 (311)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHH
Confidence 78876665 99999999999999742 34456
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 426 YILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 426 l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
.+..++.++..+|++++|..+|+++++..+
T Consensus 280 ~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 280 TLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 778899999999999999999999997544
No 79
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.28 E-value=1.1e-09 Score=116.62 Aligned_cols=223 Identities=7% Similarity=-0.043 Sum_probs=187.3
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHh---CCHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG--SIDAAIKVFQRALKALPDSEMLRYAFAELE----ESR---GAIA 337 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g--~~e~A~~v~erAl~~~P~~~~l~~~~a~l~----e~~---g~~e 337 (774)
..++++.+++++|..+|.+..+|..-+.++...+ +++++++.+++++..+|++..+|.....++ ... ++++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4568899999999999999999999999999999 999999999999999999999999888777 666 7899
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCC------HHHH
Q 004093 338 AAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVE--AARKYFLDARKSPNFTYHVYVAYALMAFCQDKD------PKLA 409 (774)
Q Consensus 338 ~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~--~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd------~~~A 409 (774)
++..+++++++.+|. +-.+|....-+..+.+.++ ++.+.++++++..+.+.++|.....+.... +. ++.+
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l-~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK-KHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS-GGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-cccchhhhHHHH
Confidence 999999999999997 5789999988888888888 999999999998777899999877766554 55 8899
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004093 410 HNVFEAGLKRFMHEPAYILEYADFLSRLND-DRNIRALFERALSSLP-PEESIEVWKRFTQFEQMYGDLDSTLKVEQRRK 487 (774)
Q Consensus 410 ~~ife~al~~~p~~~~l~~~ya~~l~~~gd-~~~Ar~lfEraL~~~p-~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~ 487 (774)
.+.++.++...|++...|.....++...|. .+.+..++++++.... .-.+...|....+...+.|+.+.+.++++++.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999999999999999877777777776 4556778888776420 01234556666666567899999999999988
Q ss_pred HH-cc
Q 004093 488 EA-LS 491 (774)
Q Consensus 488 ~~-~p 491 (774)
+. -|
T Consensus 286 ~~~Dp 290 (306)
T 3dra_A 286 SKYNP 290 (306)
T ss_dssp HTTCG
T ss_pred hccCh
Confidence 74 44
No 80
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.28 E-value=2.9e-11 Score=117.42 Aligned_cols=167 Identities=13% Similarity=0.042 Sum_probs=128.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 004093 283 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 362 (774)
Q Consensus 283 p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a 362 (774)
|...+.++..+..+...|++++|+..|+++++..|++...|+.++.++...|++++|...|++++...| . ...+...+
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~-~~~~~~~~ 80 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D-NSYKSLIA 80 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C-hHHHHHHH
Confidence 344456788888899999999999999999999999999999999999999999999999999998877 3 34443333
Q ss_pred HHHH-HhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHhcCC
Q 004093 363 RFLR-RTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE--PAYILEYADFLSRLND 439 (774)
Q Consensus 363 ~~~~-r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~--~~l~~~ya~~l~~~gd 439 (774)
.+.. +.++...|...|+++++..+....++..++.+.... |+++.|...|+++++..|+. +..+..++.++..+|+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQV-GRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 2221 222334467888888876666678888887776664 88888888888888887764 4577778888888888
Q ss_pred hhHHHHHHHHHHh
Q 004093 440 DRNIRALFERALS 452 (774)
Q Consensus 440 ~~~Ar~lfEraL~ 452 (774)
.++|...|+++|.
T Consensus 160 ~~~A~~~y~~al~ 172 (176)
T 2r5s_A 160 GNAIASKYRRQLY 172 (176)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 8888888888875
No 81
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.28 E-value=3.1e-10 Score=114.85 Aligned_cols=192 Identities=9% Similarity=0.018 Sum_probs=122.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcH--HHHH
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTA--LAHI 359 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~---~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~--~~~~ 359 (774)
.+..++..+..+...|++++|+..|++++...|.+ ...++.++..+...|++++|...|+++++..|.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 46788888999999999999999999999998876 467888899999999999999999999998886421 3555
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHH------------
Q 004093 360 QFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYI------------ 427 (774)
Q Consensus 360 ~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~------------ 427 (774)
..+..+...+.. . ...|...+..... .|+.++|...|+++++.+|+++..+
T Consensus 83 ~~g~~~~~~~~~-----~-----------~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 83 MRGLTNMALDDS-----A-----------LQGFFGVDRSDRD-PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHHC------------------------------C-CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----h-----------hhhhhccchhhcC-cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence 555544432100 0 0011111111111 1334444444444444444332211
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc
Q 004093 428 -----LEYADFLSRLNDDRNIRALFERALSSLPPEE-SIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRT 493 (774)
Q Consensus 428 -----~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~-~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk~ 493 (774)
...+.++...|++..|...|+++++..|... ....|......-.+.|+.+.+.+.++++....|++
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 3456677777788888888888887776322 23556666666667788777777777777776644
No 82
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.23 E-value=1.1e-10 Score=116.94 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=128.1
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYD----------------YATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAEL 329 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~----------------ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l 329 (774)
+..+.++..|++++..+|.++++|+. ++..+...|++++|+..|+++++..|++...|+.++.+
T Consensus 18 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 97 (208)
T 3urz_A 18 GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM 97 (208)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 34677889999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc--CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHH
Q 004093 330 EESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE--GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPK 407 (774)
Q Consensus 330 ~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~--~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~ 407 (774)
+...|++++|...|+++++..|. ...+|..++.++...+ ..+.+...|++++..++. ...+...+...... |+++
T Consensus 98 ~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~-~~~~ 174 (208)
T 3urz_A 98 QVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFT-TRYE 174 (208)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHH-HTHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHc-cCHH
Confidence 99999999999999999999997 6789999988776554 345667778777654322 22344444443443 8999
Q ss_pred HHHHHHHHHHHHcCCC
Q 004093 408 LAHNVFEAGLKRFMHE 423 (774)
Q Consensus 408 ~A~~ife~al~~~p~~ 423 (774)
.|+..|+++++.+|++
T Consensus 175 ~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 175 KARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHhCCCH
Confidence 9999999999999974
No 83
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.23 E-value=5.3e-11 Score=112.82 Aligned_cols=146 Identities=13% Similarity=0.061 Sum_probs=128.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCH
Q 004093 292 YATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGV 371 (774)
Q Consensus 292 ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~ 371 (774)
++.++.+.|++++|++.|++++...|++...++.+|.++...|++++|...|+++++.+|. ...+|..++.++.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 3455566788999999999999999999999999999999999999999999999999997 689999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 004093 372 EAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNV-FEAGLKRFMHEPAYILEYADFLSRLND 439 (774)
Q Consensus 372 ~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~i-fe~al~~~p~~~~l~~~ya~~l~~~gd 439 (774)
++|...|+++++..+....+|...+.+.... |+.+.|.+. ++++++..|+++.++.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKN-DVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-CSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999998777899999999887665 777666554 699999999999999888888888876
No 84
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.20 E-value=3.2e-08 Score=120.97 Aligned_cols=158 Identities=11% Similarity=0.020 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 004093 268 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 347 (774)
Q Consensus 268 ~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l 347 (774)
.+.+..+|.++ ..|..++..+.+.|++++|.+.+++| .+...|...+......|++..|+.+... +
T Consensus 1211 YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-I 1276 (1630)
T 1xi4_A 1211 YDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-I 1276 (1630)
T ss_pred HHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-h
Confidence 34445555553 46666666666666666666666666 3445555555555555555555555443 2
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHcC----
Q 004093 348 TDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALM--AFCQDKDPKLAHNVFEAGLKRFM---- 421 (774)
Q Consensus 348 ~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~l--E~~~~gd~~~A~~ife~al~~~p---- 421 (774)
... +......+.++.+.|.+++|..+|+++++..+.....|..++.+ .|. .++.-++.+.|..-+...+
T Consensus 1277 iv~----~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~-peklmEhlk~f~~rini~k~~r~ 1351 (1630)
T 1xi4_A 1277 VVH----ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRA 1351 (1630)
T ss_pred hcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC-HHHHHHHHHHHHHhcccchHhHH
Confidence 222 22333556666677777777777777777665545555444433 222 2455556666666655444
Q ss_pred -CCHHHHHHHHHHHHhcCChhHHH
Q 004093 422 -HEPAYILEYADFLSRLNDDRNIR 444 (774)
Q Consensus 422 -~~~~l~~~ya~~l~~~gd~~~Ar 444 (774)
+++.+|..++-++.+.+++++|.
T Consensus 1352 ~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1352 AEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHH
Confidence 55667777777777777777776
No 85
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.20 E-value=2.9e-10 Score=131.58 Aligned_cols=159 Identities=11% Similarity=-0.017 Sum_probs=128.2
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
..+.+...|++++..+|.+..+|+.++..+...|++++|.+.|+++++..|++...|+.++.++...|++++|...|+++
T Consensus 4 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCC
Q 004093 347 LTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQD---KDPKLAHNVFEAGLKRFMHE 423 (774)
Q Consensus 347 l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~---gd~~~A~~ife~al~~~p~~ 423 (774)
++..|. ...+|..++..+.+.|++++|...|+++++..+....++..++.+... . |+.+.|.+.|+++++..|++
T Consensus 84 l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 84 SDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR-LCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hhccccHHHHHHHHHHHHhcCCcc
Confidence 999887 578999999999999999999999999998777778888888887554 5 89999999999999999887
Q ss_pred HHHH
Q 004093 424 PAYI 427 (774)
Q Consensus 424 ~~l~ 427 (774)
...+
T Consensus 162 ~~~~ 165 (568)
T 2vsy_A 162 VEPF 165 (568)
T ss_dssp SCHH
T ss_pred cChH
Confidence 5444
No 86
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.20 E-value=1e-09 Score=98.87 Aligned_cols=134 Identities=19% Similarity=0.225 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 366 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~ 366 (774)
++|+.++..+...|++++|..+|++++...|.+...|+.++.++...|++++|..+|++++...+. ...+|..++..+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 467778888888888888888888888888888888888888888888888888888888877665 3556666666666
Q ss_pred HhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Q 004093 367 RTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 422 (774)
Q Consensus 367 r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~ 422 (774)
..|++++|.++|+++++..+....++...+.+.... |+++.|.+.|++++...|+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-ccHHHHHHHHHHHHccCCC
Confidence 666666666666666654444455555555554443 6666666666666655543
No 87
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.19 E-value=1.1e-10 Score=113.33 Aligned_cols=171 Identities=13% Similarity=0.029 Sum_probs=138.5
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004093 317 PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYA 396 (774)
Q Consensus 317 P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A 396 (774)
|.....++..+..+...|++++|...|++++...|. ...+|..++.++.+.|++++|...|++++...+ ....+...+
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 333445677888899999999999999999999887 678999999999999999999999999998766 565554444
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCH
Q 004093 397 LMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDL 476 (774)
Q Consensus 397 ~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~ 476 (774)
.+.....++...|.+.|+++++..|+++..+..++..+...|++++|...|++++...|.......|..+.......|+.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 33322112334579999999999999999999999999999999999999999999887433356787888877789999
Q ss_pred HHHHHHHHHHHHH
Q 004093 477 DSTLKVEQRRKEA 489 (774)
Q Consensus 477 ~~i~kv~~R~~~~ 489 (774)
+.+...++|++..
T Consensus 161 ~~A~~~y~~al~~ 173 (176)
T 2r5s_A 161 NAIASKYRRQLYS 173 (176)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 8888888877654
No 88
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.19 E-value=4e-10 Score=130.47 Aligned_cols=156 Identities=12% Similarity=0.026 Sum_probs=128.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHH
Q 004093 299 SGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYF 378 (774)
Q Consensus 299 ~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if 378 (774)
.|++++|.+.|+++++..|.+...|+.++..+...|++++|...|+++++..|. ...+|..++..+...|++++|...|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999987 5789999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHhcCC
Q 004093 379 LDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRL---NDDRNIRALFERALSSLP 455 (774)
Q Consensus 379 ~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~---gd~~~Ar~lfEraL~~~p 455 (774)
+++++..+....+|..++.+.... |+++.|.+.|+++++..|+++..+..++..+... |++++|...|++++...|
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDA-GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 999998777799999999887775 9999999999999999999999999999999999 999999999999999776
Q ss_pred c
Q 004093 456 P 456 (774)
Q Consensus 456 ~ 456 (774)
.
T Consensus 160 ~ 160 (568)
T 2vsy_A 160 G 160 (568)
T ss_dssp C
T ss_pred c
Confidence 3
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=9.9e-10 Score=113.29 Aligned_cols=178 Identities=12% Similarity=0.054 Sum_probs=144.7
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC---C
Q 004093 313 LKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT--ALAHIQFIRFLRRTEGVEAARKYFLDARKSPN---F 387 (774)
Q Consensus 313 l~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~--~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~---~ 387 (774)
....|.+...++..|..+...|++++|...|++++...|... ..+|..++..+.+.|+++.|...|+++++..+ .
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 345788889999999999999999999999999999988631 67899999999999999999999999998533 2
Q ss_pred CHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHHcCCCHHHH-----------------HHHHHHHHhcCChhH
Q 004093 388 TYHVYVAYALMAFC--------QDKDPKLAHNVFEAGLKRFMHEPAYI-----------------LEYADFLSRLNDDRN 442 (774)
Q Consensus 388 ~~~~~i~~A~lE~~--------~~gd~~~A~~ife~al~~~p~~~~l~-----------------~~ya~~l~~~gd~~~ 442 (774)
...++...+...+. . |+++.|...|+++++.+|+++..+ ...+.++...|++++
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQ-TDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCC-HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHhcccccccc-hhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 35667777776555 4 899999999999999999886554 566888999999999
Q ss_pred HHHHHHHHHhcCCchh-HHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHHHcc
Q 004093 443 IRALFERALSSLPPEE-SIEVWKRFTQFEQMY----------GDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 443 Ar~lfEraL~~~p~e~-~~~lw~~~~~fE~~~----------Gd~~~i~kv~~R~~~~~p 491 (774)
|...|++++...|... ....|.......... |+.+.+.+.++++.+.+|
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 9999999999888422 344454444443333 888899999999999998
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.18 E-value=1.7e-10 Score=118.58 Aligned_cols=155 Identities=13% Similarity=0.078 Sum_probs=128.2
Q ss_pred HcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC-----CC--CcHHHHHHHH
Q 004093 298 KSGSIDAAIKVFQRALKAL--------PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS-----VN--TTALAHIQFI 362 (774)
Q Consensus 298 ~~g~~e~A~~v~erAl~~~--------P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~-----~~--~~~~~~~~~a 362 (774)
..|++++|+..|++|+... |....++..++.++...|++++|...|++++... +. ....+|..++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4577888888888888742 4556788899999999999999999999999762 11 1356888999
Q ss_pred HHHHHhcCHHHHHHHHHHHhcC------C--CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--------cCCCHHH
Q 004093 363 RFLRRTEGVEAARKYFLDARKS------P--NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR--------FMHEPAY 426 (774)
Q Consensus 363 ~~~~r~~~~~~Ar~if~~al~~------~--~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~--------~p~~~~l 426 (774)
..+...|++++|...|++++.. + +....++...+.+.+.. |+++.|..+|+++++. .+.....
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQ-GKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999999875 2 23467788888876665 9999999999999997 4444567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc
Q 004093 427 ILEYADFLSRLNDDRNIRALFERALSS 453 (774)
Q Consensus 427 ~~~ya~~l~~~gd~~~Ar~lfEraL~~ 453 (774)
+..++..+...|++++|..+|++++..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788999999999999999999999975
No 91
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.16 E-value=9.5e-10 Score=115.94 Aligned_cols=173 Identities=13% Similarity=0.009 Sum_probs=146.7
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHH
Q 004093 315 ALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA 394 (774)
Q Consensus 315 ~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~ 394 (774)
..|.+...++..|..+...|++++|...|++++...|. ...++..++..+.+.|++++|..+|++++...+........
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 35888899999999999999999999999999999997 57899999999999999999999999998865542333333
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhC
Q 004093 395 YALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYG 474 (774)
Q Consensus 395 ~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~G 474 (774)
. .+.+...++.+.|...|++++...|+++..+..++..+...|++++|...|++++...|.......|..+..+....|
T Consensus 191 ~-~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 A-QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp H-HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred H-HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2 222222367778999999999999999999999999999999999999999999999885555788999998888999
Q ss_pred CHHHHHHHHHHHHHH
Q 004093 475 DLDSTLKVEQRRKEA 489 (774)
Q Consensus 475 d~~~i~kv~~R~~~~ 489 (774)
+.+.+...++|+...
T Consensus 270 ~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 270 TGDALASXYRRQLYA 284 (287)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 988877777777654
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=3.7e-10 Score=119.21 Aligned_cols=188 Identities=11% Similarity=0.056 Sum_probs=139.9
Q ss_pred chHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHh-
Q 004093 267 SNKRIIFTYEQCLMYLYH------YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS------EMLRYAFAELEESR- 333 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~------~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~------~~l~~~~a~l~e~~- 333 (774)
..+.+...|++++.+.+. ...+|.+++..+...|++++|+..|++|+...+.. ...+..++.++...
T Consensus 52 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~l 131 (292)
T 1qqe_A 52 ELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDL 131 (292)
T ss_dssp CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence 345677888888887532 25789999999999999999999999999886643 35677889999996
Q ss_pred CCHHHHHHHHHHHhcCCCCC-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHh
Q 004093 334 GAIAAAKKLYESLLTDSVNT-----TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTY-------HVYVAYALMAFC 401 (774)
Q Consensus 334 g~~e~A~~iyek~l~~~~~~-----~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~-------~~~i~~A~lE~~ 401 (774)
|++++|...|++++...+.. ...++..++.++.+.|++++|...|+++++..+... ..|...+.+...
T Consensus 132 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 211 (292)
T 1qqe_A 132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA 211 (292)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence 99999999999999875531 135788889999999999999999999998543321 256666766555
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCHH-----HHHHHHHHHH--hcCChhHHHHHHHHHHhcCC
Q 004093 402 QDKDPKLAHNVFEAGLKRFMHEPA-----YILEYADFLS--RLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 402 ~~gd~~~A~~ife~al~~~p~~~~-----l~~~ya~~l~--~~gd~~~Ar~lfEraL~~~p 455 (774)
. |+++.|+..|+++++..|+... ++...+..+. ..+++++|...|++++...|
T Consensus 212 ~-g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 212 A-TDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp T-TCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred c-CCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 4 9999999999999988776433 2333333332 34668888888888877654
No 93
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.15 E-value=3.3e-09 Score=115.93 Aligned_cols=181 Identities=10% Similarity=0.074 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCC
Q 004093 269 KRIIFTYEQCLMYLYHY-------PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS------EMLRYAFAELEESRGA 335 (774)
Q Consensus 269 ~r~~~~yeraL~~~p~~-------~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~------~~l~~~~a~l~e~~g~ 335 (774)
..+...|++++...+.. ..++..++..+...|++++|.+.|++|+...+.. ...+..+|.++...|+
T Consensus 160 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 160 YFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp HHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 34455666666654332 3578888999999999999999999999875432 2467788999999999
Q ss_pred HHHHHHHHHHHhc-----CC-CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC----CC-CHHHHHHHHHHHHhcCC
Q 004093 336 IAAAKKLYESLLT-----DS-VNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP----NF-TYHVYVAYALMAFCQDK 404 (774)
Q Consensus 336 ~e~A~~iyek~l~-----~~-~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~----~~-~~~~~i~~A~lE~~~~g 404 (774)
+++|...|++++. .. +. ...++..++..+...|++++|...|+++++.. .. ....+...+.+ +...|
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~-~~~~~ 317 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPS-LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSL-YLSGP 317 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HTSSC
T ss_pred HHHHHHHHHHHHHHHHhhccchh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhCCC
Confidence 9999999999998 34 33 46788888999999999999999999988631 11 11122333443 23346
Q ss_pred C---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004093 405 D---PKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALS 452 (774)
Q Consensus 405 d---~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~ 452 (774)
+ .++|..++++. ...+....++...+.++...|++++|..+|++++.
T Consensus 318 ~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 318 DEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6 56666666554 11222344566777888888888888888888886
No 94
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.14 E-value=1.7e-09 Score=118.10 Aligned_cols=223 Identities=8% Similarity=-0.014 Sum_probs=175.9
Q ss_pred hchHHHHHHHHHHHHhc---C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYL---Y---HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS-------EMLRYAFAELEES 332 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~---p---~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~-------~~l~~~~a~l~e~ 332 (774)
+..+.+...|++++... + ....+|+.++.++...|++++|...|++|+...+.. ...+..+|.++..
T Consensus 117 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 196 (383)
T 3ulq_A 117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLD 196 (383)
T ss_dssp TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH
Confidence 34677889999999862 2 356899999999999999999999999999875432 3467788999999
Q ss_pred hCCHHHHHHHHHHHhcCCCCC-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHhc-----CC-CCCHHHHHHHHHHHHh
Q 004093 333 RGAIAAAKKLYESLLTDSVNT-----TALAHIQFIRFLRRTEGVEAARKYFLDARK-----SP-NFTYHVYVAYALMAFC 401 (774)
Q Consensus 333 ~g~~e~A~~iyek~l~~~~~~-----~~~~~~~~a~~~~r~~~~~~Ar~if~~al~-----~~-~~~~~~~i~~A~lE~~ 401 (774)
.|++++|...|++++...+.. ...++..++.++...|++++|...|+++++ .. +....++...+.+...
T Consensus 197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (383)
T 3ulq_A 197 LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK 276 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 999999999999999763321 234788899999999999999999999998 33 4447788888888666
Q ss_pred cCCCHHHHHHHHHHHHHHcC--CCHHH---HHHHHHHHHhcCC---hhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHh
Q 004093 402 QDKDPKLAHNVFEAGLKRFM--HEPAY---ILEYADFLSRLND---DRNIRALFERALSSLPPEESIEVWKRFTQFEQMY 473 (774)
Q Consensus 402 ~~gd~~~A~~ife~al~~~p--~~~~l---~~~ya~~l~~~gd---~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~ 473 (774)
. |+++.|...|+++++..+ .++.. +...+.++...|+ .++|..++++.- . ......++.....+....
T Consensus 277 ~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-~--~~~~~~~~~~la~~y~~~ 352 (383)
T 3ulq_A 277 L-GKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-L--YADLEDFAIDVAKYYHER 352 (383)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHHHHT
T ss_pred C-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-C--HHHHHHHHHHHHHHHHHC
Confidence 5 999999999999998743 23332 3456667777888 677777777761 1 124456777777888889
Q ss_pred CCHHHHHHHHHHHHHHccc
Q 004093 474 GDLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 474 Gd~~~i~kv~~R~~~~~pk 492 (774)
|+.+.+...++++.+...+
T Consensus 353 g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 353 KNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp TCHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998864
No 95
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.13 E-value=1.5e-08 Score=113.94 Aligned_cols=350 Identities=9% Similarity=0.017 Sum_probs=204.5
Q ss_pred hccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCH---HHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhc
Q 004093 33 ALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNND---DATKQLFSRCLLICLQVPLWRCYIRFIRKVYEK 109 (774)
Q Consensus 33 ~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~---~~a~~ifeRaL~~~p~~~lW~~Yl~~~~~~~~~ 109 (774)
++.+++++|..+|+++... .+ ...+..++.++...|+. ++|...|++++.. +...+......+.....
T Consensus 14 ~~~g~~~~A~~~~~~aa~~--g~----~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~- 84 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAEL--GY----SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPG- 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TC----CTGGGTCC------------------------------CHHHHHHHHHTC---
T ss_pred HhCCCHHHHHHHHHHHHHC--CC----HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCC-
Confidence 4556899999999999876 34 55677788888777777 8999999999977 55555555552322110
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcc--cCc--cHHHHHHH
Q 004093 110 KGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT--PTH--HVEQLWKD 185 (774)
Q Consensus 110 ~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~--P~~--~~e~l~~~ 185 (774)
....+.+++...|+++++. + ....+..+........... .. ..+...|.++... +.. .+..++
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~-g----~~~A~~~Lg~~y~~~~~~~-----~~-~~a~~~~~~a~~~g~~~a~~~Lg~~y-- 151 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFAN-G----EGNTLIPLAMLYLQYPHSF-----PN-VNAQQQISQWQAAGYPEAGLAQVLLY-- 151 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHT-T----CSSCHHHHHHHHHHCGGGC-----TT-CCHHHHHHHHHHHTCTTHHHHHHHHH--
T ss_pred CCCcCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHhCCCCC-----CC-HHHHHHHHHHHHCCCHHHHHHHHHHH--
Confidence 0013567889999988873 1 2235555555544321100 00 2233444444321 111 011111
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCch
Q 004093 186 YENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTA 265 (774)
Q Consensus 186 y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~ 265 (774)
.... .+......+..+++ ... ...|. .+..+-..|.. .+. .
T Consensus 152 ----~~~~----------~~~~~~~~a~~~~~-------~a~----~~~~~------a~~~Lg~~~~~--~g~------~ 192 (452)
T 3e4b_A 152 ----RTQG----------TYDQHLDDVERICK-------AAL----NTTDI------CYVELATVYQK--KQQ------P 192 (452)
T ss_dssp ----HHHT----------CGGGGHHHHHHHHH-------HHT----TTCTT------HHHHHHHHHHH--TTC------H
T ss_pred ----HcCC----------CcccCHHHHHHHHH-------HHH----cCCHH------HHHHHHHHHHH--cCC------c
Confidence 0000 00111122222221 111 11111 12223222222 221 1
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHhCCHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKS----GSIDAAIKVFQRALKALPDSEMLRYAFAEL-E--ESRGAIAA 338 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~----g~~e~A~~v~erAl~~~P~~~~l~~~~a~l-~--e~~g~~e~ 338 (774)
...+.++..|++++...+.....|+.++.++... +++++|...|+++. |.+...++.++.+ + ...+++++
T Consensus 193 ~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~ 269 (452)
T 3e4b_A 193 EQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQ 269 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHH
Confidence 2567788999999999999999999999998665 68999999999998 8888899999987 4 45799999
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc-----CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCCHHHHH
Q 004093 339 AKKLYESLLTDSVNTTALAHIQFIRFLRRTE-----GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ---DKDPKLAH 410 (774)
Q Consensus 339 A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~-----~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~---~gd~~~A~ 410 (774)
|...|+++++.. ...++..++.++. .| ++++|...|+++. ......+..++.+...- .+|+++|+
T Consensus 270 A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~ 342 (452)
T 3e4b_A 270 MMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKAL 342 (452)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHH
Confidence 999999999865 3678888888777 55 9999999999999 34578888888764431 24999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCC
Q 004093 411 NVFEAGLKRFMHEPAYILEYADFLSR----LNDDRNIRALFERALSSLP 455 (774)
Q Consensus 411 ~ife~al~~~p~~~~l~~~ya~~l~~----~gd~~~Ar~lfEraL~~~p 455 (774)
+.|+++.+.- ++.-...++.++.. ..|..+|..+|++|...-.
T Consensus 343 ~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 343 DHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999998753 33344455555543 3588999999999998654
No 96
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.13 E-value=5.9e-10 Score=102.38 Aligned_cols=119 Identities=12% Similarity=-0.025 Sum_probs=98.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHH
Q 004093 278 CLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALA 357 (774)
Q Consensus 278 aL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~ 357 (774)
+..++|...+.|.+.+..+.+.|++++|++.|++|++..|.+..+|+.++.++...|++++|...|+++++.+|. ...+
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a 83 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKG 83 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHH
Confidence 344678888889999999999999999999999999999999999999999999999999999999999998886 5778
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004093 358 HIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYAL 397 (774)
Q Consensus 358 ~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~ 397 (774)
|..++..+...|++++|...|+++++..+....++..++.
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 8888888888888888888888888766655666655443
No 97
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.10 E-value=3.9e-08 Score=105.91 Aligned_cols=222 Identities=6% Similarity=-0.067 Sum_probs=173.2
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-C-CHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG-SIDAAIKVFQRALKALPDSEMLRYAFAELEESR-G-AIAAAKKLY 343 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g-~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~-g-~~e~A~~iy 343 (774)
..++++.+++++|..+|.+..+|..-..++...+ +++++++.+++++..+|++..+|.....+.... + +++++..++
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 4567899999999999999999999999999999 599999999999999999999999988888887 7 889999999
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCC-------HHH
Q 004093 344 ESLLTDSVNTTALAHIQFIRFLRRTEGVE--------AARKYFLDARKSPNFTYHVYVAYALMAFCQDKD-------PKL 408 (774)
Q Consensus 344 ek~l~~~~~~~~~~~~~~a~~~~r~~~~~--------~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd-------~~~ 408 (774)
+++++.++. +-.+|....-+..+.+.++ ++.+.++++++..+.+..+|.....+.... +. ++.
T Consensus 149 ~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l-~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR-PGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS-TTCCCCHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-cccccchHHHHH
Confidence 999999987 5689988877777777666 899999999997777899999887776554 44 688
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhH-----------------HHHHHHHHHhcCCch-------hHHHHHH
Q 004093 409 AHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRN-----------------IRALFERALSSLPPE-------ESIEVWK 464 (774)
Q Consensus 409 A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~-----------------Ar~lfEraL~~~p~e-------~~~~lw~ 464 (774)
+.+.+++++...|++...|...-.++.+.|.... .-.+-+-+++..... .+.-.+.
T Consensus 227 ELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 306 (349)
T 3q7a_A 227 ELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE 306 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence 9999999999999999999655555655554311 123444444433211 3455666
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHc
Q 004093 465 RFTQFEQMYGDLDSTLKVEQRRKEAL 490 (774)
Q Consensus 465 ~~~~fE~~~Gd~~~i~kv~~R~~~~~ 490 (774)
..++...+.|+.+.+.++.+...+..
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~~~ 332 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSSEY 332 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhh
Confidence 66666667788887777777766443
No 98
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.10 E-value=2e-10 Score=109.30 Aligned_cols=113 Identities=16% Similarity=0.010 Sum_probs=105.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 004093 274 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT 353 (774)
Q Consensus 274 ~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~ 353 (774)
.|++++...|.+.+.|+.++..+.+.|++++|...|++++...|.+...|+.++.++...|++++|...|++++...|.
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~- 102 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN- 102 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-
Confidence 4778888999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 004093 354 TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF 387 (774)
Q Consensus 354 ~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~ 387 (774)
.+.+|..++..+...|++++|+..|+++++..+.
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5689999999999999999999999999986544
No 99
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.09 E-value=4.1e-07 Score=111.42 Aligned_cols=162 Identities=14% Similarity=0.072 Sum_probs=106.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--CCHHHHHHHHHHHhcCCCC----CcH
Q 004093 282 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESR--GAIAAAKKLYESLLTDSVN----TTA 355 (774)
Q Consensus 282 ~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~--g~~e~A~~iyek~l~~~~~----~~~ 355 (774)
.-.+++.....+.++.+.|.+++|+.+|+.|+...+.+..+|..++.++.+. ++..++.+.|.+-++..+. ...
T Consensus 1276 Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~ 1355 (1630)
T 1xi4_A 1276 IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQA 1355 (1630)
T ss_pred hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHH
Confidence 3456677778899999999999999999999999988888887777777654 5666777888888776551 135
Q ss_pred HHHHHHHHHHHHhcCHHHHHHH-------------HHHHhcCCCCCHHHHHHHHHHHHhcCC---------------CHH
Q 004093 356 LAHIQFIRFLRRTEGVEAARKY-------------FLDARKSPNFTYHVYVAYALMAFCQDK---------------DPK 407 (774)
Q Consensus 356 ~~~~~~a~~~~r~~~~~~Ar~i-------------f~~al~~~~~~~~~~i~~A~lE~~~~g---------------d~~ 407 (774)
.+|..+.-++.+.++++.|... |+..+... .+.++|...+.+.... + |.+
T Consensus 1356 ~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv-~n~elyykai~Fyl~~-~P~~lndLl~~l~~rlD~~ 1433 (1630)
T 1xi4_A 1356 HLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKV-ANVELYYRAIQFYLEF-KPLLLNDLLMVLSPRLDHT 1433 (1630)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhccc-ccHHHHHHHHHHHHhh-ChHHHHHHHHHhhhcCChH
Confidence 6888888888889999988733 33333333 3477777776654332 4 566
Q ss_pred HHHHHHHHH-----HHH------cCCCHHHHHHHHHHHHhcCChhHHHH
Q 004093 408 LAHNVFEAG-----LKR------FMHEPAYILEYADFLSRLNDDRNIRA 445 (774)
Q Consensus 408 ~A~~ife~a-----l~~------~p~~~~l~~~ya~~l~~~gd~~~Ar~ 445 (774)
++.++|.+. ++. ..++..+=..+.+++....|++.-|.
T Consensus 1434 R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~ 1482 (1630)
T 1xi4_A 1434 RAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRT 1482 (1630)
T ss_pred HHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHHHHH
Confidence 666666511 110 12333444455566665555544333
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=5e-09 Score=94.17 Aligned_cols=133 Identities=14% Similarity=0.105 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004093 321 MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAF 400 (774)
Q Consensus 321 ~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~ 400 (774)
..|+.++..+...|++++|..+|++++...+. ...+|..++..+...++++.|..+|++++...+....++...+.+..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 35677888888999999999999999988776 56788888999999999999999999999876667888888888766
Q ss_pred hcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 401 CQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 401 ~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
.. |+++.|.++|+++++..|++...+..++..+...|++++|..+|++++...|
T Consensus 81 ~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQ-GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred Hh-cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 64 9999999999999999999999999999999999999999999999998655
No 101
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=1.4e-09 Score=114.74 Aligned_cols=173 Identities=13% Similarity=0.008 Sum_probs=138.1
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCCHHHHHH
Q 004093 268 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPD------SEMLRYAFAELEESRGAIAAAKK 341 (774)
Q Consensus 268 ~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~------~~~l~~~~a~l~e~~g~~e~A~~ 341 (774)
.+.+...|+++ +..+...|++++|.+.|++|+...+. ....+...+.++...|++++|..
T Consensus 33 ~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 98 (292)
T 1qqe_A 33 FEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98 (292)
T ss_dssp HHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566777776 44667889999999999999987432 24578889999999999999999
Q ss_pred HHHHHhcCCCCC-----cHHHHHHHHHHHHHh-cCHHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHhcCCCHHHH
Q 004093 342 LYESLLTDSVNT-----TALAHIQFIRFLRRT-EGVEAARKYFLDARKSPNF------TYHVYVAYALMAFCQDKDPKLA 409 (774)
Q Consensus 342 iyek~l~~~~~~-----~~~~~~~~a~~~~r~-~~~~~Ar~if~~al~~~~~------~~~~~i~~A~lE~~~~gd~~~A 409 (774)
.|++++...+.. ...+|..++..+... |++++|...|++|++..+. ...++...+.+.... |+++.|
T Consensus 99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A 177 (292)
T 1qqe_A 99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD-GQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh-CCHHHH
Confidence 999999865421 135788889999986 9999999999999974221 145677778776665 999999
Q ss_pred HHHHHHHHHHcCCCHH-------HHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 410 HNVFEAGLKRFMHEPA-------YILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 410 ~~ife~al~~~p~~~~-------l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
..+|+++++..|++.. .+...+..+..+|++++|+..|++++...|
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999998876543 566778888999999999999999999776
No 102
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.06 E-value=3.3e-08 Score=105.91 Aligned_cols=223 Identities=8% Similarity=-0.111 Sum_probs=176.4
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGS----------IDAAIKVFQRALKALPDSEMLRYAFAELEESRG-- 334 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~----------~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g-- 334 (774)
..++++.+++++|..+|.+..+|..-..++...+. +++++.+++.++..+|++..+|...+.++...+
T Consensus 45 ~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 45 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc
Confidence 34678899999999999999999999888877654 678999999999999999999999998888888
Q ss_pred CHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----------
Q 004093 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEG-VEAARKYFLDARKSPNFTYHVYVAYALMAFCQD---------- 403 (774)
Q Consensus 335 ~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~-~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~---------- 403 (774)
.++++..+++++++.+|. +-.+|....-+....+. .+++.+.+.++++..+.+..+|.....+.....
T Consensus 125 ~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 125 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------C
T ss_pred cHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccc
Confidence 489999999999999997 56899888888888887 699999999999977778999988766654431
Q ss_pred ---CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 004093 404 ---KDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRL-----------NDDRNIRALFERALSSLPPEESIEVWKRFTQF 469 (774)
Q Consensus 404 ---gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~-----------gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~f 469 (774)
+.++.+.+.+..++...|++...|...-.++... +-++++...++++++..|. . .=.+...+.+
T Consensus 204 ~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd-~-~w~l~~~~~~ 281 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE-N-KWCLLTIILL 281 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT-C-HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc-c-chHHHHHHHH
Confidence 2367899999999999999999995443333333 2367889999999998883 2 1112222222
Q ss_pred HH---HhCCHHHHHHHHHHHHHHccc
Q 004093 470 EQ---MYGDLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 470 E~---~~Gd~~~i~kv~~R~~~~~pk 492 (774)
.. ..|..+.+...+.+.+++-|-
T Consensus 282 ~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 282 MRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred HHhhcccccHHHHHHHHHHHHHhCcc
Confidence 21 246667788888888888883
No 103
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.06 E-value=1.1e-08 Score=111.68 Aligned_cols=221 Identities=13% Similarity=0.064 Sum_probs=170.6
Q ss_pred chHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHh
Q 004093 267 SNKRIIFTYEQCLMYLY------HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS-------EMLRYAFAELEESR 333 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p------~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~-------~~l~~~~a~l~e~~ 333 (774)
....++..|++++.... ....+++.++.++...|++++|...+++|+...+.. ...+..+|.++...
T Consensus 116 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~ 195 (378)
T 3q15_A 116 EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF 195 (378)
T ss_dssp CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh
Confidence 45778899999998643 356789999999999999999999999999875431 34567889999999
Q ss_pred CCHHHHHHHHHHHhcCCC---C--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHhcC
Q 004093 334 GAIAAAKKLYESLLTDSV---N--TTALAHIQFIRFLRRTEGVEAARKYFLDARK-----SPNFTYHVYVAYALMAFCQD 403 (774)
Q Consensus 334 g~~e~A~~iyek~l~~~~---~--~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~-----~~~~~~~~~i~~A~lE~~~~ 403 (774)
|++++|...|++++.... . ....++..++..+...|++++|...|++++. ..+....++...+.+....
T Consensus 196 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~- 274 (378)
T 3q15_A 196 KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA- 274 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHT-
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHC-
Confidence 999999999999997532 1 1245788889999999999999999999997 5444477888888887665
Q ss_pred CCHHHHHHHHHHHHHHcCC--CH---HHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCC
Q 004093 404 KDPKLAHNVFEAGLKRFMH--EP---AYILEYADFLSRLND---DRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGD 475 (774)
Q Consensus 404 gd~~~A~~ife~al~~~p~--~~---~l~~~ya~~l~~~gd---~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd 475 (774)
|+++.|...|+++++.... ++ ..+.....++...++ ..+|..++++.- . ......++.....+-...|+
T Consensus 275 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~--~~~~~~~~~~la~~y~~~g~ 351 (378)
T 3q15_A 275 GQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-L--HAYIEACARSAAAVFESSCH 351 (378)
T ss_dssp TCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-C--hhHHHHHHHHHHHHHHHCCC
Confidence 9999999999999998543 22 223344445555666 667777776621 1 12345677777777778999
Q ss_pred HHHHHHHHHHHHHHcc
Q 004093 476 LDSTLKVEQRRKEALS 491 (774)
Q Consensus 476 ~~~i~kv~~R~~~~~p 491 (774)
.+.+.+.++++.+...
T Consensus 352 ~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 352 FEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988775
No 104
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.05 E-value=4.7e-08 Score=109.94 Aligned_cols=359 Identities=10% Similarity=0.009 Sum_probs=207.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 004093 65 QYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYIT 144 (774)
Q Consensus 65 ~y~~~e~~~~n~~~a~~ifeRaL~~~p~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~ 144 (774)
..+....+.|++++|.++|+++...- +.+.+..........+. ..+.+++...|+++++. + ...+..+..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g-~~~A~~~Lg~~y~~~g~---~~d~~~A~~~~~~A~~~---~---~~A~~~Lg~ 77 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG-YSEAQVGLADIQVGTRD---PAQIKQAEATYRAAADT---S---PRAQARLGR 77 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-CCTGGGTCC-------------------------------------CHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHccCC---CCCHHHHHHHHHHHHhC---C---HHHHHHHHH
Confidence 46777888999999999999998763 33333333222222222 12347889999988754 3 345555555
Q ss_pred HHhhCCcCchHHHhHHHHHHHHHHHHHHcc-cCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004093 145 FLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYC 223 (774)
Q Consensus 145 fe~~~~~~~~~~~~~~~~~ar~vYqral~~-P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~ 223 (774)
.+..... ...++.++|...|++++.. +..-...+-..|.... .+..+...+. .+.
T Consensus 78 ~~~~~~~----~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~-----------------~~~~~~~a~~---~~~ 133 (452)
T 3e4b_A 78 LLAAKPG----ATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYP-----------------HSFPNVNAQQ---QIS 133 (452)
T ss_dssp HHHTC------CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCG-----------------GGCTTCCHHH---HHH
T ss_pred HHHhCCC----CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-----------------CCCCCHHHHH---HHH
Confidence 3222100 0125788999999999964 2221111111111100 0000000000 011
Q ss_pred HHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---
Q 004093 224 EEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG--- 300 (774)
Q Consensus 224 ~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g--- 300 (774)
...... . + ..+..+-..| ..+. ..+ .....+..+++.+...+| ..++.++.++...|
T Consensus 134 ~a~~~g---~-~------~a~~~Lg~~y---~~~~--~~~--~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~ 193 (452)
T 3e4b_A 134 QWQAAG---Y-P------EAGLAQVLLY---RTQG--TYD--QHLDDVERICKAALNTTD---ICYVELATVYQKKQQPE 193 (452)
T ss_dssp HHHHHT---C-T------THHHHHHHHH---HHHT--CGG--GGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHH
T ss_pred HHHHCC---C-H------HHHHHHHHHH---HcCC--Ccc--cCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcc
Confidence 111000 0 1 0111122111 1211 111 122334555666555444 49999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHhcCCCCCcHHHHHHHHHH-H--HHhcCHHH
Q 004093 301 SIDAAIKVFQRALKALPDSEMLRYAFAELEESR----GAIAAAKKLYESLLTDSVNTTALAHIQFIRF-L--RRTEGVEA 373 (774)
Q Consensus 301 ~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~----g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~-~--~r~~~~~~ 373 (774)
+.++|++.|++++...|.....++.++.++... +++++|...|+++. +. ...++..++.+ + ...+++++
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g-~~~a~~~Lg~~~~~~~~~~d~~~ 269 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG-YPASWVSLAQLLYDFPELGDVEQ 269 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG-STHHHHHHHHHHHHSGGGCCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC-CHHHHHHHHHHHHhCCCCCCHHH
Confidence 899999999999999999999888899888765 79999999999998 32 45788888876 4 45889999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh----cCChhHHHHH
Q 004093 374 ARKYFLDARKSPNFTYHVYVAYALMAFCQ---DKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSR----LNDDRNIRAL 446 (774)
Q Consensus 374 Ar~if~~al~~~~~~~~~~i~~A~lE~~~---~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~----~gd~~~Ar~l 446 (774)
|...|+++.+.. ....+..++.+...- .+++++|.+.|+++. +.++..+..++.++.. ..++++|..+
T Consensus 270 A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 344 (452)
T 3e4b_A 270 MMKYLDNGRAAD--QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDH 344 (452)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred HHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 999999999875 467777777764421 139999999999999 7788888788877765 3489999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHH
Q 004093 447 FERALSSLPPEESIEVWKRFTQFEQMY---GDLDSTLKVEQRRKEA 489 (774)
Q Consensus 447 fEraL~~~p~e~~~~lw~~~~~fE~~~---Gd~~~i~kv~~R~~~~ 489 (774)
|+++.+.-.++ ..+..-..++.-. .|...+...++++.+.
T Consensus 345 ~~~Aa~~g~~~---A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 345 LLTAARNGQNS---ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HHHHHTTTCTT---HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHHHhhChHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 99999853321 1222222232212 2677777777777654
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.04 E-value=8.5e-09 Score=104.14 Aligned_cols=157 Identities=11% Similarity=0.011 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCH---HHHHH
Q 004093 320 EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT--ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTY---HVYVA 394 (774)
Q Consensus 320 ~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~--~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~---~~~i~ 394 (774)
...++..|..+...|++++|...|++++...|... ..++..++..+.+.|++++|+..|+++++..+... .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34566677777777888888888888887766432 35777777777778888888888888776433322 23333
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHH-H------------
Q 004093 395 YALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESI-E------------ 461 (774)
Q Consensus 395 ~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~-~------------ 461 (774)
.+...+.. +. ..+ ..+...+..+...|++++|...|+++++..|..... .
T Consensus 84 ~g~~~~~~-~~-----~~~-----------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 84 RGLTNMAL-DD-----SAL-----------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp HHHHHHHH-HC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh-hh-----hhh-----------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence 33332221 11 011 112223344456788999999999999998842211 0
Q ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc
Q 004093 462 --VWKRFTQFEQMYGDLDSTLKVEQRRKEALSRT 493 (774)
Q Consensus 462 --lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk~ 493 (774)
.......+....|+...+...++++++.+|+.
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~ 180 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDT 180 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCC
Confidence 11233455557899999999999999999853
No 106
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.03 E-value=1.1e-09 Score=115.03 Aligned_cols=173 Identities=9% Similarity=-0.079 Sum_probs=135.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 004093 283 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 362 (774)
Q Consensus 283 p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a 362 (774)
|.....|+..+..+...|++++|+..|++|+...|.+..+|+.++.++...|++++|...|+++++..|. ...+|..++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 5677899999999999999999999999999999999999999999999999999999999999999987 678999999
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 004093 363 RFLRRTEGVEAARKYFLDARKSPNF-----TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRL 437 (774)
Q Consensus 363 ~~~~r~~~~~~Ar~if~~al~~~~~-----~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~ 437 (774)
..+...|++++|...|+++++..+. ...++.... ...+...........+.++.+...+..++ .
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~ 148 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---------IAKKKRWNSIEERRIHQESELHSYLTRLI--A 148 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---------HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--H
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---------HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--H
Confidence 9999999999999999999874221 112222211 11223333333445677777776666654 6
Q ss_pred CChhHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 004093 438 NDDRNIRALFERALSSLPPEESIEVWKRFTQF 469 (774)
Q Consensus 438 gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~f 469 (774)
|++++|...|+++++..| ....+.......
T Consensus 149 ~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~ 178 (281)
T 2c2l_A 149 AERERELEECQRNHEGHE--DDGHIRAQQACI 178 (281)
T ss_dssp HHHHHHHTTTSGGGTTTS--CHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhhhcccc--chhhhhhHHHHH
Confidence 889999999999999877 333444444333
No 107
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.01 E-value=1.6e-09 Score=102.34 Aligned_cols=111 Identities=14% Similarity=-0.005 Sum_probs=102.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 004093 274 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT 353 (774)
Q Consensus 274 ~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~ 353 (774)
.|++++...|.+...|+.++..+...|++++|+..|++++...|.+..+|+.++.++...|++++|...|++++...|.
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~- 87 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX- 87 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 004093 354 TALAHIQFIRFLRRTEGVEAARKYFLDARKSP 385 (774)
Q Consensus 354 ~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~ 385 (774)
...+|..++..+...|++++|+..|+++++..
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 56788889999999999999999999988743
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.00 E-value=3.5e-09 Score=97.12 Aligned_cols=119 Identities=10% Similarity=-0.017 Sum_probs=96.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHH
Q 004093 313 LKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVY 392 (774)
Q Consensus 313 l~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~ 392 (774)
...+|+....+...|..+...|++++|...|+++++..|. ...+|..++..+.+.|++++|...|+++++..+....+|
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 3456777777888888888889999999999999888886 578888888888888888888888888888766678888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004093 393 VAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADF 433 (774)
Q Consensus 393 i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~ 433 (774)
...+.+.... |+++.|.+.|+++++..|++.+.+..+..+
T Consensus 85 ~~lg~~~~~~-~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAM-REWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 8888876665 888888888888888888888777665543
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.00 E-value=1.8e-08 Score=101.00 Aligned_cols=174 Identities=14% Similarity=0.032 Sum_probs=143.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHh
Q 004093 272 IFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG----AIAAAKKLYESLL 347 (774)
Q Consensus 272 ~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g----~~e~A~~iyek~l 347 (774)
...|+++... .++..++.++.++...+++++|++.|++|+.. .+...++.++.++.. + ++++|...|++++
T Consensus 6 ~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 6 GSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp THHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4678888865 78999999999999999999999999999875 577888889998887 6 8999999999998
Q ss_pred cCCCCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHH
Q 004093 348 TDSVNTTALAHIQFIRFLRR----TEGVEAARKYFLDARKSPNF--TYHVYVAYALMAFC---QDKDPKLAHNVFEAGLK 418 (774)
Q Consensus 348 ~~~~~~~~~~~~~~a~~~~r----~~~~~~Ar~if~~al~~~~~--~~~~~i~~A~lE~~---~~gd~~~A~~ife~al~ 418 (774)
+.. ...++..++.++.. .+++++|..+|+++++..+. ....+..++.+... ..+++++|.+.|+++++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 764 46788888888877 78999999999999998662 36778888877554 13789999999999999
Q ss_pred HcCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHhcC
Q 004093 419 RFMHEPAYILEYADFLSRL-N-----DDRNIRALFERALSSL 454 (774)
Q Consensus 419 ~~p~~~~l~~~ya~~l~~~-g-----d~~~Ar~lfEraL~~~ 454 (774)
. +.++.-+..++.++... + ++++|..+|+++++.-
T Consensus 158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8 44555555666666543 3 8999999999999863
No 110
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.99 E-value=1.6e-09 Score=116.96 Aligned_cols=164 Identities=13% Similarity=0.064 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 004093 269 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 348 (774)
Q Consensus 269 ~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~ 348 (774)
+++...|++++...|.....|..++..+.+.|++++|+..|++|+...|.+..+. .+.+..+-
T Consensus 130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~------------~~~~~~~~----- 192 (336)
T 1p5q_A 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS------------NEEAQKAQ----- 192 (336)
T ss_dssp ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC------------SHHHHHHH-----
T ss_pred ccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCC------------hHHHHHHH-----
Confidence 3445667888888899999999999999999999999999999999999873100 00000000
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHH
Q 004093 349 DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL 428 (774)
Q Consensus 349 ~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~ 428 (774)
+. ...+|..++.++.+.+++++|...|+++++..+....+|...+.+.+.. |+++.|+..|+++++..|++...+.
T Consensus 193 --~~-~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~~a~~ 268 (336)
T 1p5q_A 193 --AL-RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAV-NDFELARADFQKVLQLYPNNKAAKT 268 (336)
T ss_dssp --HH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred --HH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 00 1234444444555555555555555555544444455555555544443 5666666666666666666666555
Q ss_pred HHHHHHHhcCChhHH-HHHHHHHHhc
Q 004093 429 EYADFLSRLNDDRNI-RALFERALSS 453 (774)
Q Consensus 429 ~ya~~l~~~gd~~~A-r~lfEraL~~ 453 (774)
.++.++..++++++| +.+|++++..
T Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 269 QLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666665555 4555555543
No 111
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.98 E-value=1.2e-09 Score=114.24 Aligned_cols=195 Identities=14% Similarity=0.005 Sum_probs=159.5
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDY-------ATWNAKSGSIDAAIKVFQRALKALPDS-------------------- 319 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~y-------a~~l~~~g~~e~A~~v~erAl~~~P~~-------------------- 319 (774)
....+...|.+++..+|..++.|..+ +..+...++..++...+.+++...|..
T Consensus 21 d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~ 100 (282)
T 4f3v_A 21 SEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTS 100 (282)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSS
T ss_pred CHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCC
Confidence 44667889999999999999999999 788888888888889999998855432
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC--HHHHHHHH
Q 004093 320 -EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT--YHVYVAYA 396 (774)
Q Consensus 320 -~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~--~~~~i~~A 396 (774)
..+++.|+.++...|++++|.++|+.++...|. .. ++...+..+.+.++++.|...|+++...+... ..+++..+
T Consensus 101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG 178 (282)
T 4f3v_A 101 PLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHG 178 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHH
Confidence 457778999999999999999999999987775 33 77777788889999999999999888765331 23666666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHc--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHH
Q 004093 397 LMAFCQDKDPKLAHNVFEAGLKRF--MH-EPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFT 467 (774)
Q Consensus 397 ~lE~~~~gd~~~A~~ife~al~~~--p~-~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~ 467 (774)
...... |+.++|...|++++... |. .++.+..++..+.++|+.++|+.+|++++...| . ..+|..+.
T Consensus 179 ~al~~L-G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P--~-~~~~~aL~ 248 (282)
T 4f3v_A 179 VAAANL-ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP--E-PKVAAALK 248 (282)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC--C-HHHHHHHH
T ss_pred HHHHHC-CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--c-HHHHHHHh
Confidence 665565 99999999999998543 44 556788999999999999999999999999988 3 66666553
No 112
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.97 E-value=1.4e-09 Score=101.55 Aligned_cols=112 Identities=15% Similarity=0.026 Sum_probs=99.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 004093 273 FTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 273 ~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~ 352 (774)
..|++++...|.+.+.|+.++..+...|++++|+..|++++...|.+..+|+.++.++...|++++|...|++++...|.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46788888899999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 004093 353 TTALAHIQFIRFLRRTEGVEAARKYFLDARKSP 385 (774)
Q Consensus 353 ~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~ 385 (774)
...+|..++..+...|++++|...|+++++..
T Consensus 85 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 85 -EPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp -CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 56788888999999999999999999988753
No 113
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.96 E-value=8.5e-10 Score=119.20 Aligned_cols=170 Identities=13% Similarity=0.039 Sum_probs=134.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHH
Q 004093 299 SGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYF 378 (774)
Q Consensus 299 ~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if 378 (774)
.+++++|++.|++++...|.....|..++..+...|++++|...|++++...+.... . .. +.+..+-
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-~-----------~~-~~~~~~~ 192 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS-F-----------SN-EEAQKAQ 192 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-C-----------CS-HHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc-C-----------Ch-HHHHHHH
Confidence 445677888888888888888888999999999999999999999999988775311 0 00 1111100
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchh
Q 004093 379 LDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEE 458 (774)
Q Consensus 379 ~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~ 458 (774)
+....+|.+++.+.... |+++.|+..|+++++..|+++..+...+..+..+|++++|+..|+++++..| .
T Consensus 193 -------~~~~~~~~nla~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~ 262 (336)
T 1p5q_A 193 -------ALRLASHLNLAMCHLKL-QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP--N 262 (336)
T ss_dssp -------HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--S
T ss_pred -------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--C
Confidence 11256778888876665 9999999999999999999999999999999999999999999999999988 4
Q ss_pred HHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHcc
Q 004093 459 SIEVWKRFTQFEQMYGDLDST-LKVEQRRKEALS 491 (774)
Q Consensus 459 ~~~lw~~~~~fE~~~Gd~~~i-~kv~~R~~~~~p 491 (774)
...+|..........|+.+.. .+.++++...+.
T Consensus 263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777777777788888766 568888888776
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.96 E-value=3.3e-08 Score=105.07 Aligned_cols=198 Identities=8% Similarity=-0.018 Sum_probs=164.2
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH--
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWN----AKS---GSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIA-- 337 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l----~~~---g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e-- 337 (774)
..+..+..++++|..+|.+..+|..-..++ ... ++++++++++++++..+|++...|....-+....+.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~ 163 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDA 163 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCH
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChH
Confidence 345567899999999999999999998888 666 78999999999999999999999999998898999888
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHH
Q 004093 338 AAKKLYESLLTDSVNTTALAHIQFIRFLRRTEG------VEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHN 411 (774)
Q Consensus 338 ~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~------~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ 411 (774)
++.+.++++++.++. +-.+|..........+. ++++.+.+.+++...+.+..+|.....+........+.+..
T Consensus 164 ~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~ 242 (306)
T 3dra_A 164 KELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEE 242 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHH
Confidence 999999999999987 56799888887777776 89999999999987777799998776665554333454556
Q ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHH
Q 004093 412 VFEAGLKRF---MHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRF 466 (774)
Q Consensus 412 ife~al~~~---p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~ 466 (774)
+++..++.. +.++..+...++.+.+.|+.++|..+|++++++..+ .....|..-
T Consensus 243 ~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dp-ir~~yW~~~ 299 (306)
T 3dra_A 243 FSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNP-IRSNFWDYQ 299 (306)
T ss_dssp HHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG-GGHHHHHHH
T ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccCh-HHHHHHHHH
Confidence 666666554 677888888889988999999999999999985432 567888744
No 115
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.95 E-value=2e-08 Score=94.60 Aligned_cols=131 Identities=12% Similarity=-0.082 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 004093 286 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 365 (774)
Q Consensus 286 ~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~ 365 (774)
...|+..+..+...|++++|...|++++...|.+..+|+.++.++...|++++|...|++++...|. ...+|..++..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 4677888888888888888888888888888888888888888888888888888888888887775 466777777777
Q ss_pred HHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhcCCCHHHHHHHHHHHHH
Q 004093 366 RRTEGVEAARKYFLDARKSPNFTYHVYVAYAL--MAFCQDKDPKLAHNVFEAGLK 418 (774)
Q Consensus 366 ~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~--lE~~~~gd~~~A~~ife~al~ 418 (774)
...|++++|...|+++++..+....++..++. ..... |++++|.++++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ-KAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHHHHHcccchHH
Confidence 77777777777777777654444555432222 22222 555666666555443
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.95 E-value=3.5e-09 Score=100.66 Aligned_cols=113 Identities=8% Similarity=0.027 Sum_probs=85.2
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Q 004093 341 KLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF 420 (774)
Q Consensus 341 ~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~ 420 (774)
..|++++...|. ...+|..++..+.+.|++++|...|++++...+....+|...+.+.... |+++.|...|+++++..
T Consensus 23 ~~l~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~-g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 23 ATLKDINAIPDD-MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK-EQFQQAADLYAVAFALG 100 (151)
T ss_dssp CCTGGGCCSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHS
T ss_pred CCHHHHhCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhC
Confidence 345666666665 4567777777777778888888888887776666677777777765554 78888888888888888
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 421 MHEPAYILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 421 p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
|+++..|...+..+..+|++++|...|++++...|
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88888888888888888888888888888887766
No 117
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.94 E-value=7e-09 Score=99.99 Aligned_cols=120 Identities=9% Similarity=0.040 Sum_probs=108.5
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhCCH--HHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAEL-EESRGAI--AAAKKLY 343 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l-~e~~g~~--e~A~~iy 343 (774)
..+.++..|++++...|.++.+|+.++.++...|++++|+..|++++...|.+..+|+.++.+ +...|++ ++|...|
T Consensus 25 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~ 104 (177)
T 2e2e_A 25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMI 104 (177)
T ss_dssp --CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 344456789999999999999999999999999999999999999999999999999999999 7788998 9999999
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 004093 344 ESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF 387 (774)
Q Consensus 344 ek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~ 387 (774)
++++...|. ...+|..++.++...|++++|...|+++++..+.
T Consensus 105 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 105 DKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 999999887 5788999999999999999999999999986554
No 118
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.93 E-value=7.9e-08 Score=104.12 Aligned_cols=224 Identities=8% Similarity=-0.052 Sum_probs=156.1
Q ss_pred chHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCC
Q 004093 267 SNKRIIFTYEQCLMYLYHYPD-----IWYDYATWNAKSGSIDAAIKVFQRALKALPDS------EMLRYAFAELEESRGA 335 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~-----iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~------~~l~~~~a~l~e~~g~ 335 (774)
..+.+...+++++...|.... ++...+.++...|++++|+..+++++...+.. ...+..++.++...|+
T Consensus 29 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~ 108 (373)
T 1hz4_A 29 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 108 (373)
T ss_dssp CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCC
Confidence 346677888888887765432 45667778888899999999999998865432 1224567788888899
Q ss_pred HHHHHHHHHHHhcCCC-------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcC
Q 004093 336 IAAAKKLYESLLTDSV-------NTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF-----TYHVYVAYALMAFCQD 403 (774)
Q Consensus 336 ~e~A~~iyek~l~~~~-------~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~-----~~~~~i~~A~lE~~~~ 403 (774)
+++|...|++++...+ .....++..++..+...|++++|+..|++++...+. ...++...+.+....
T Consensus 109 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~- 187 (373)
T 1hz4_A 109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR- 187 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc-
Confidence 9999999988886431 112346667778888889999999999988864221 245566667765554
Q ss_pred CCHHHHHHHHHHHHHHcC--CCHHHHH-----HHHHHHHhcCChhHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHhC
Q 004093 404 KDPKLAHNVFEAGLKRFM--HEPAYIL-----EYADFLSRLNDDRNIRALFERALSSLPPE--ESIEVWKRFTQFEQMYG 474 (774)
Q Consensus 404 gd~~~A~~ife~al~~~p--~~~~l~~-----~ya~~l~~~gd~~~Ar~lfEraL~~~p~e--~~~~lw~~~~~fE~~~G 474 (774)
|+++.|...+++++...+ +.+..+. ..+.++...|++++|+.++++++...+.. .....+..........|
T Consensus 188 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 267 (373)
T 1hz4_A 188 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG 267 (373)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcC
Confidence 899999999999887632 2222222 23344667899999999999988754421 11234555566666788
Q ss_pred CHHHHHHHHHHHHHHcc
Q 004093 475 DLDSTLKVEQRRKEALS 491 (774)
Q Consensus 475 d~~~i~kv~~R~~~~~p 491 (774)
+.+.+....+++.+..+
T Consensus 268 ~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 268 EFEPAEIVLEELNENAR 284 (373)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 88888888888877765
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.92 E-value=3.2e-09 Score=100.26 Aligned_cols=119 Identities=8% Similarity=-0.048 Sum_probs=87.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 004093 306 IKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP 385 (774)
Q Consensus 306 ~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~ 385 (774)
...|++++...|.+...++.++..+...|++++|...|++++...|. ...+|..++..+...|++++|...|++++...
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34577777777777777777777777778888888888888877776 46777777777777777777777777777765
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHH
Q 004093 386 NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAY 426 (774)
Q Consensus 386 ~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l 426 (774)
+....+|...+.+.... |+++.|.+.|+++++..|+++.+
T Consensus 86 p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQX-GELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCchHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCCCcc
Confidence 55567777777665554 77777777777777777766543
No 120
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.92 E-value=7.8e-09 Score=95.43 Aligned_cols=111 Identities=14% Similarity=0.127 Sum_probs=74.3
Q ss_pred hCCCCHHHHHHHHHHHHHhCCH------HHHHHHHHHHhcCCCCC-------cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004093 315 ALPDSEMLRYAFAELEESRGAI------AAAKKLYESLLTDSVNT-------TALAHIQFIRFLRRTEGVEAARKYFLDA 381 (774)
Q Consensus 315 ~~P~~~~l~~~~a~l~e~~g~~------e~A~~iyek~l~~~~~~-------~~~~~~~~a~~~~r~~~~~~Ar~if~~a 381 (774)
..|++.+.|+.|+.+++..|+. ++.+++|++++..-|.. ...+|+.|+.|. ..++.++||++|+.|
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-AIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-HHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHH
Confidence 4689999999999999999988 89999999999766532 234666666553 346666666666666
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHH
Q 004093 382 RKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYI 427 (774)
Q Consensus 382 l~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~ 427 (774)
++.......+|+.+|++|.+. |+.++||+|+.+|+...|...+++
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRq-gnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQ-GNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHhccCCCcHHHH
Confidence 554333466666666666663 666666666666666655554444
No 121
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.91 E-value=7.3e-09 Score=99.86 Aligned_cols=125 Identities=12% Similarity=0.028 Sum_probs=88.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHH-HHHhcCH--HHH
Q 004093 298 KSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF-LRRTEGV--EAA 374 (774)
Q Consensus 298 ~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~-~~r~~~~--~~A 374 (774)
..|++++|+..|++++...|.+...|+.++.++...|++++|...|++++...|. ...+|..++.. +...+++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHH
Confidence 4567788888999999988988888888888888888888888888888887776 46677777776 5566666 677
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCH
Q 004093 375 RKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 424 (774)
Q Consensus 375 r~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~ 424 (774)
...|+++++..+....+|...+.+.+.. |+++.|...|+++++..|++.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQ-ANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhhCCCCc
Confidence 7777776665555566666666655543 666666666666666666553
No 122
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.89 E-value=2e-08 Score=90.95 Aligned_cols=100 Identities=12% Similarity=-0.055 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF 364 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~ 364 (774)
..+.|+..+..+...|++++|+..|++++...|.+..+|+.++..+...|++++|...|++++...|. ...+|..++..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 45778888888889999999999999999999999889989999888899999999999999988886 56788888888
Q ss_pred HHHhcCHHHHHHHHHHHhcCC
Q 004093 365 LRRTEGVEAARKYFLDARKSP 385 (774)
Q Consensus 365 ~~r~~~~~~Ar~if~~al~~~ 385 (774)
+...|++++|...|+++++..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 888888888888888877654
No 123
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.89 E-value=3.7e-09 Score=98.61 Aligned_cols=118 Identities=14% Similarity=-0.049 Sum_probs=78.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC
Q 004093 307 KVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN 386 (774)
Q Consensus 307 ~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~ 386 (774)
..|++++...|.+...++.++..+...|++++|...|++++...|. ...+|..++..+.+.|++++|...|++++...+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4566666667777777777777777777777777777777777765 466777777777777777777777777776555
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHH
Q 004093 387 FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAY 426 (774)
Q Consensus 387 ~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l 426 (774)
....+|...+.+.... |+++.|.+.|+++++..|+++.+
T Consensus 84 ~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQL-GDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp TCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCGGG
T ss_pred CCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCcch
Confidence 5566666666665553 77777777777777766665543
No 124
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.87 E-value=5.8e-08 Score=103.03 Aligned_cols=164 Identities=10% Similarity=-0.004 Sum_probs=125.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC-----CcHHH
Q 004093 289 WYDYATWNAKSGSIDAAIKVFQRALKALPDS------EMLRYAFAELEESRGAIAAAKKLYESLLTDSVN-----TTALA 357 (774)
Q Consensus 289 W~~ya~~l~~~g~~e~A~~v~erAl~~~P~~------~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~-----~~~~~ 357 (774)
+...+..+...|++++|...|++++...+.. ...+...+.++...|++++|...|++++..... ....+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344667778899999999999999875422 346677888888999999999999999876321 12357
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC------HH
Q 004093 358 HIQFIRFLRRTEGVEAARKYFLDARKSPNF------TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE------PA 425 (774)
Q Consensus 358 ~~~~a~~~~r~~~~~~Ar~if~~al~~~~~------~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~------~~ 425 (774)
+..++.++.. |++++|...|++|+...+. ...++...+.+.... |+++.|+..|++++...+++ ..
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQ-QKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 7788888877 9999999999999864211 145677777776664 99999999999999976533 23
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 426 YILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 426 l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
.+...+..+..+|++++|+..|++++ ..|
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 55666677778899999999999999 666
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.87 E-value=5.4e-08 Score=91.62 Aligned_cols=132 Identities=9% Similarity=-0.052 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 004093 357 AHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSR 436 (774)
Q Consensus 357 ~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~ 436 (774)
.|...+..+...|+++.|...|+++++..+....+|...+.+.... |+++.|...|+++++..|+++..+..++..+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3444444444445555555555555443333344454444443332 555555555555555555555555555555555
Q ss_pred cCChhHHHHHHHHHHhcCCchhHHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 437 LNDDRNIRALFERALSSLPPEESIEVW--KRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 437 ~gd~~~Ar~lfEraL~~~p~e~~~~lw--~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
.|++++|..+|++++...|.. ..+| ..........|+.+.+.+..++....++
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHD--KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 555555555555555544421 1222 1122222234555555555555555554
No 126
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.87 E-value=2.1e-07 Score=100.77 Aligned_cols=224 Identities=12% Similarity=-0.001 Sum_probs=166.2
Q ss_pred chHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYP------DIWYDYATWNAKSGSIDAAIKVFQRALKAL--------PDSEMLRYAFAELEES 332 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~------~iW~~ya~~l~~~g~~e~A~~v~erAl~~~--------P~~~~l~~~~a~l~e~ 332 (774)
..+.+...|++++...+... .++..++..+...|++++|...|++++... |.....+..++.++..
T Consensus 68 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 147 (373)
T 1hz4_A 68 ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 147 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH
Confidence 34667788999988765433 235678888999999999999999999864 2334566778899999
Q ss_pred hCCHHHHHHHHHHHhcCCCCC----cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC---CCCCHHHHHH-----HHHHHH
Q 004093 333 RGAIAAAKKLYESLLTDSVNT----TALAHIQFIRFLRRTEGVEAARKYFLDARKS---PNFTYHVYVA-----YALMAF 400 (774)
Q Consensus 333 ~g~~e~A~~iyek~l~~~~~~----~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~---~~~~~~~~i~-----~A~lE~ 400 (774)
.|++++|...|++++...+.. ...++..++..+...|++++|+..+++++.. .... ..+.. .+.+..
T Consensus 148 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~ 226 (373)
T 1hz4_A 148 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH-SDWISNANKVRVIYWQ 226 (373)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc-hhHHHHHHHHHHHHHH
Confidence 999999999999999765531 2457788889999999999999999998753 1111 12222 122222
Q ss_pred hcCCCHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHH
Q 004093 401 CQDKDPKLAHNVFEAGLKRFMHE----PAYILEYADFLSRLNDDRNIRALFERALSSLPP----EESIEVWKRFTQFEQM 472 (774)
Q Consensus 401 ~~~gd~~~A~~ife~al~~~p~~----~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~----e~~~~lw~~~~~fE~~ 472 (774)
. .|+.+.|...+++++...+.. ...+..++..+...|++++|..++++++...+. .....++.........
T Consensus 227 ~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 227 M-TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp H-TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred H-CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 3 599999999999998765532 234567888899999999999999999875321 1223355555566667
Q ss_pred hCCHHHHHHHHHHHHHHccc
Q 004093 473 YGDLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 473 ~Gd~~~i~kv~~R~~~~~pk 492 (774)
.|+.+.+...++++.+..+.
T Consensus 306 ~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 306 AGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HTCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhcc
Confidence 89999999999999988763
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.86 E-value=3e-08 Score=88.81 Aligned_cols=115 Identities=13% Similarity=-0.001 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 004093 283 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 362 (774)
Q Consensus 283 p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a 362 (774)
|.....|+..+..+...|++++|...|++++...|.+..+|+.++.++...|++++|...|++++...+. ...+|..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 87 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHH
Confidence 4456778888888888888888888888888888888888888888888888888888888888877665 355666666
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004093 363 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALM 398 (774)
Q Consensus 363 ~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~l 398 (774)
.++...++++.|...|+++++..+....++...+.+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 123 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 666666666666666666665444445555444444
No 128
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.85 E-value=1e-07 Score=83.70 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 004093 286 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 365 (774)
Q Consensus 286 ~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~ 365 (774)
...|+..+..+...|++++|...|++++...|.+..+|+.++.++...|++++|...|++++...|. ...+|..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 4678888888889999999999999999999998888989999888899999999999999988876 567888888888
Q ss_pred HHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004093 366 RRTEGVEAARKYFLDARKSPNFTYHVYVAYALM 398 (774)
Q Consensus 366 ~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~l 398 (774)
...|++++|+..|+++++..+....++...+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 888888888888888888766667776666554
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.84 E-value=2.4e-08 Score=90.17 Aligned_cols=115 Identities=13% Similarity=-0.027 Sum_probs=80.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 004093 283 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 362 (774)
Q Consensus 283 p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a 362 (774)
|.....|+..+..+...|++++|...|++++...|.+..+|+.++.++...|++++|...|+++++..+. ...+|..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 4566777778888888888888888888888888877777777777777777888888888877777665 456666666
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004093 363 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALM 398 (774)
Q Consensus 363 ~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~l 398 (774)
..+.+.|++++|+..|+++++..+....++...+.+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 127 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 127 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 666666666666666666665443334444444443
No 130
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.83 E-value=7.4e-08 Score=105.02 Aligned_cols=167 Identities=14% Similarity=0.051 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---CHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC------CcH
Q 004093 288 IWYDYATWNAKSGSIDAAIKVFQRALKALP---D---SEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN------TTA 355 (774)
Q Consensus 288 iW~~ya~~l~~~g~~e~A~~v~erAl~~~P---~---~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~------~~~ 355 (774)
.|+..+.++...|++++|+..|++|+...+ + ...+++.+|.++...|+++.|...|++++...+. ...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567778889999999999999999998643 2 3457788999999999999999999999975332 124
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcC----C--CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----HcCCCH
Q 004093 356 LAHIQFIRFLRRTEGVEAARKYFLDARKS----P--NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLK-----RFMHEP 424 (774)
Q Consensus 356 ~~~~~~a~~~~r~~~~~~Ar~if~~al~~----~--~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~-----~~p~~~ 424 (774)
.++..++..+...|++++|...|++|++. + .....++...+.+.... |+++.|...|++++. ..|..+
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS-GDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 57788899999999999999999999873 1 11245677777776665 999999999999999 556666
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 425 AYILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 425 ~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
..+...+..+..+|++++|..+|++++...+
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999998654
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.83 E-value=6.9e-08 Score=111.71 Aligned_cols=175 Identities=8% Similarity=-0.058 Sum_probs=153.3
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGS----------IDAAIKVFQRALKALPDSEMLRYAFAELEESRG-- 334 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~----------~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g-- 334 (774)
..++++..|++++..+|.+..+|..-+..+...++ ++++++.+++++..+|++..+|...+-+....+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 44678899999999999999999999999998887 899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc-CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----------
Q 004093 335 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE-GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ----------- 402 (774)
Q Consensus 335 ~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~-~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~----------- 402 (774)
+++++.+.++++++.++. +..+|........+.+ .++++.+.+.++++..+....+|...+.+....
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 779999999999999997 5789998888888888 899999999999998888899999877665442
Q ss_pred --CCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhH
Q 004093 403 --DKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRN 442 (774)
Q Consensus 403 --~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~ 442 (774)
.+.+++|.+.+..++...|++...|..+..++...+.+++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 1346899999999999999999999777777766666544
No 132
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.82 E-value=2.9e-08 Score=94.61 Aligned_cols=109 Identities=11% Similarity=-0.034 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 004093 284 HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIR 363 (774)
Q Consensus 284 ~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~ 363 (774)
.....|+..+..+...|++++|++.|++++...|.+..+|+.++.++...|++++|...|++++...|. ...+|..++.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 456788888889999999999999999999999999999999999999999999999999999988886 5778888888
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCHHHHH
Q 004093 364 FLRRTEGVEAARKYFLDARKSPNFTYHVYV 393 (774)
Q Consensus 364 ~~~r~~~~~~Ar~if~~al~~~~~~~~~~i 393 (774)
.+...|++++|+..|+++++..+.....|+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 117 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAM 117 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 888888888888888888875444344443
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.81 E-value=1.5e-07 Score=83.31 Aligned_cols=112 Identities=20% Similarity=0.245 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 004093 286 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 365 (774)
Q Consensus 286 ~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~ 365 (774)
...|+.++..+...|++++|.+.|++++...|.+...|+.++.++...|++++|..+|++++...+. ...+|..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 6778888888888888888888888888888888888888888888888888888888888877665 456666666666
Q ss_pred HHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004093 366 RRTEGVEAARKYFLDARKSPNFTYHVYVAYALM 398 (774)
Q Consensus 366 ~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~l 398 (774)
...+++++|...|+++++..+....++...+.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 666666677666666666544445555544443
No 134
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.81 E-value=1.9e-07 Score=92.27 Aligned_cols=129 Identities=9% Similarity=0.065 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 004093 323 RYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ 402 (774)
Q Consensus 323 ~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~ 402 (774)
++..+..+...|++++|...|++++. + ...+|..++..+.+.|++++|...|++++...+....+|...+.+....
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~--~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQD--P--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS--C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcC--C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 34555556666666666666666642 1 2456666666666666666666666666665555566666666665553
Q ss_pred CCCHHHHHHHHHHHHHHcCCCH----------------HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCc
Q 004093 403 DKDPKLAHNVFEAGLKRFMHEP----------------AYILEYADFLSRLNDDRNIRALFERALSSLPP 456 (774)
Q Consensus 403 ~gd~~~A~~ife~al~~~p~~~----------------~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~ 456 (774)
|+++.|...|+++++..|++. ..+...+..+...|++++|...|++++...|.
T Consensus 85 -~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 85 -EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp -TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred -ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 677777777777777655544 78888888899999999999999999998774
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.80 E-value=6.9e-08 Score=87.09 Aligned_cols=115 Identities=13% Similarity=-0.017 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004093 319 SEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALM 398 (774)
Q Consensus 319 ~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~l 398 (774)
+...|+..+..+...|++++|...|++++...+. ...+|..++..+...+++++|...|+++++..+....+|...+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3444555555555555555555555555555443 244455555555555555555555555554433344444444444
Q ss_pred HHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004093 399 AFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLS 435 (774)
Q Consensus 399 E~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~ 435 (774)
.... |+++.|++.|+++++..|++...+..++.++.
T Consensus 94 ~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 94 LEAM-KDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHH-hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3332 45555555555555555444444444444433
No 136
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.80 E-value=7.9e-08 Score=95.04 Aligned_cols=130 Identities=14% Similarity=0.063 Sum_probs=108.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Q 004093 289 WYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT 368 (774)
Q Consensus 289 W~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~ 368 (774)
++..+..+...|++++|+..|++++ +.+..+|+.++.++...|++++|...|++++...+. ...+|..++..+...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHc
Confidence 5566778888899999999999885 336778888999999999999999999999988876 578888899999999
Q ss_pred cCHHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC
Q 004093 369 EGVEAARKYFLDARKSPNFT----------------YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE 423 (774)
Q Consensus 369 ~~~~~Ar~if~~al~~~~~~----------------~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~ 423 (774)
|++++|...|+++++..+.. ..+|...+.+.+.. |+++.|...|+++++..|++
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK-EEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCSG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc-cCHHHHHHHHHHHHHcCccc
Confidence 99999999999998854332 37888888876665 99999999999999988875
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.80 E-value=9.3e-08 Score=85.52 Aligned_cols=122 Identities=10% Similarity=-0.063 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004093 317 PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYA 396 (774)
Q Consensus 317 P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A 396 (774)
|.+...++..+..+...|++++|...|++++...+. ...+|..++.++...+++++|...|++++...+....+|...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 344556667777777778888888888887777665 4667777777777777777777777777776555577777777
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCh
Q 004093 397 LMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDD 440 (774)
Q Consensus 397 ~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~ 440 (774)
.+.... |+++.|.+.|+++++..|+++..+..++.++...|++
T Consensus 88 ~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSL-NKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHh-CCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 665554 7777777777777777777777777777776666654
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.79 E-value=3e-07 Score=96.51 Aligned_cols=170 Identities=9% Similarity=-0.011 Sum_probs=132.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC---
Q 004093 283 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEM------LRYAFAELEESRGAIAAAKKLYESLLTDSVNT--- 353 (774)
Q Consensus 283 p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~------l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~--- 353 (774)
|.....+...+..+...|++++|.+.+++++...+.... .++..+.++...|++++|...|++++......
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 444556677788888999999999999999998776542 23456677777899999999999999754321
Q ss_pred --cHHHHHHHHHHHHHhcCHHHHHHHHHHHhc---CCCCC----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--
Q 004093 354 --TALAHIQFIRFLRRTEGVEAARKYFLDARK---SPNFT----YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH-- 422 (774)
Q Consensus 354 --~~~~~~~~a~~~~r~~~~~~Ar~if~~al~---~~~~~----~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~-- 422 (774)
...+|...+.++...|++++|...|++|++ ..+.. ..++.+.+.+.... |++++|...|+++++..++
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~-~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD-SRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHhcC
Confidence 145788889999999999999999999983 22221 25777888776664 9999999999999986432
Q ss_pred ----CHHHHHHHHHHHHhcCChhHH-HHHHHHHHhc
Q 004093 423 ----EPAYILEYADFLSRLNDDRNI-RALFERALSS 453 (774)
Q Consensus 423 ----~~~l~~~ya~~l~~~gd~~~A-r~lfEraL~~ 453 (774)
...++...+..+..+|++++| ..+|++|+..
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 156777888999999999999 8889999863
No 139
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.79 E-value=1.1e-08 Score=100.84 Aligned_cols=87 Identities=7% Similarity=-0.033 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004093 356 LAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLS 435 (774)
Q Consensus 356 ~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~ 435 (774)
.+|..++..+...+++++|...|+++++..+....+|...+.+.... |+++.|++.|+++++..|+++.++..++.++.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF-GFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 45555666666666666666666666665444566666666654444 66666666666666666666666666665555
Q ss_pred hcCChhHH
Q 004093 436 RLNDDRNI 443 (774)
Q Consensus 436 ~~gd~~~A 443 (774)
.+++..++
T Consensus 168 ~~~~~~~~ 175 (198)
T 2fbn_A 168 KLKEARKK 175 (198)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 55444333
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.78 E-value=5.8e-08 Score=88.14 Aligned_cols=99 Identities=10% Similarity=-0.060 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 366 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~ 366 (774)
..|+..+..+.+.|++++|+..|+++++..|++...|+.++.++...|++++|...|++++...|. ...+|..++..+.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 347788888889999999999999999999999999999999999999999999999999999887 5778899999999
Q ss_pred HhcCHHHHHHHHHHHhcCCC
Q 004093 367 RTEGVEAARKYFLDARKSPN 386 (774)
Q Consensus 367 r~~~~~~Ar~if~~al~~~~ 386 (774)
..|++++|+..|+++++..+
T Consensus 97 ~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999887544
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.77 E-value=8.5e-09 Score=108.28 Aligned_cols=176 Identities=7% Similarity=-0.044 Sum_probs=130.6
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
+..+.++..|++++...|.+..+|+.++..+...|++++|...|++|++..|.+..+++.+|..+...|++++|...|++
T Consensus 18 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR 97 (281)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCC----cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 004093 346 LLTDSVNT----TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM 421 (774)
Q Consensus 346 ~l~~~~~~----~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p 421 (774)
++...|.. ...+|..+.. ..+...........+....+...+..+ . .|+++.|.+.|+++++..|
T Consensus 98 al~l~p~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~l~~l--~-~~~~~~A~~~~~~al~~~p 166 (281)
T 2c2l_A 98 AYSLAKEQRLNFGDDIPSALRI--------AKKKRWNSIEERRIHQESELHSYLTRL--I-AAERERELEECQRNHEGHE 166 (281)
T ss_dssp HHHHHHHTTCCCCSHHHHHHHH--------HHHHHHHHHHHTCCCCCCHHHHHHHHH--H-HHHHHHHHTTTSGGGTTTS
T ss_pred HHHhCccchhhHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhHHHHHHHHHH--H-HHHHHHHHHHHHhhhcccc
Confidence 99876642 1234433311 111222222222211222332222332 2 3789999999999999999
Q ss_pred CCHHHHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 004093 422 HEPAYILEYADFLSRL-NDDRNIRALFERALS 452 (774)
Q Consensus 422 ~~~~l~~~ya~~l~~~-gd~~~Ar~lfEraL~ 452 (774)
++..+......++... +.+++|..+|+++.+
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 167 DDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8877666666655554 557778888887765
No 142
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.76 E-value=1.3e-07 Score=85.64 Aligned_cols=99 Identities=12% Similarity=-0.020 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004093 320 EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMA 399 (774)
Q Consensus 320 ~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE 399 (774)
...|+..+..+...|++++|...|++++...|. ...+|..++..+.+.|++++|...|+++++..+....+|...+.+.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 344555555555666666666666666665554 3455555555555555555555555555554444455555555554
Q ss_pred HhcCCCHHHHHHHHHHHHHHc
Q 004093 400 FCQDKDPKLAHNVFEAGLKRF 420 (774)
Q Consensus 400 ~~~~gd~~~A~~ife~al~~~ 420 (774)
... |+++.|...|+++++..
T Consensus 83 ~~~-~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAV-KEYASALETLDAARTKD 102 (126)
T ss_dssp HHT-TCHHHHHHHHHHHHHHH
T ss_pred HHH-hCHHHHHHHHHHHHHhC
Confidence 443 55555555555555555
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.76 E-value=1e-07 Score=87.13 Aligned_cols=103 Identities=12% Similarity=-0.091 Sum_probs=93.3
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHH
Q 004093 281 YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQ 360 (774)
Q Consensus 281 ~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~ 360 (774)
..+..+..|+..+..+...|++++|...|++++...|.+..+|+.++.++...|++++|...|++++...|. ...+|..
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 82 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFF 82 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999999998887 5788999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhcC
Q 004093 361 FIRFLRRTEGVEAARKYFLDARKS 384 (774)
Q Consensus 361 ~a~~~~r~~~~~~Ar~if~~al~~ 384 (774)
++..+...|+++.|...|+++++.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999998864
No 144
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=1.4e-07 Score=86.79 Aligned_cols=116 Identities=10% Similarity=-0.065 Sum_probs=90.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHH
Q 004093 282 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAH 358 (774)
Q Consensus 282 ~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~---~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~ 358 (774)
.+.....|+..+..+...|++++|.+.|++++...|.+ ..+|+.++..+...|++++|...|++++...+. ...+|
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 46778889999999999999999999999999988887 777888888888888888888888888887775 46677
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004093 359 IQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALM 398 (774)
Q Consensus 359 ~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~l 398 (774)
..++..+...+++++|+..|+++++..+....++..++.+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 7777777777777777777777776555555555555544
No 145
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.73 E-value=2.1e-07 Score=97.72 Aligned_cols=160 Identities=9% Similarity=0.001 Sum_probs=110.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----HH-HHHHHHHHhCCHHHHHHHHHHHhcCCCCC--c---HHHHHH
Q 004093 292 YATWNAKSGSIDAAIKVFQRALKALPDSEML-----RY-AFAELEESRGAIAAAKKLYESLLTDSVNT--T---ALAHIQ 360 (774)
Q Consensus 292 ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l-----~~-~~a~l~e~~g~~e~A~~iyek~l~~~~~~--~---~~~~~~ 360 (774)
.+..+...+++++|.++|++++...+..... |+ ..+.++...+++++|...|++++...... . ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566778899999999999999877665442 22 35666666778899999999998743221 1 236777
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhc----C---CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC------HHHH
Q 004093 361 FIRFLRRTEGVEAARKYFLDARK----S---PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE------PAYI 427 (774)
Q Consensus 361 ~a~~~~r~~~~~~Ar~if~~al~----~---~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~------~~l~ 427 (774)
++.++...|++++|...|+++++ . ......+|.+.+.+.... |++++|.+.|+++++..+.. +.++
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~-~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD-SRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 78888888888888888888884 1 111244566666665554 78888888888887754321 4566
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHh
Q 004093 428 LEYADFLSRLND-DRNIRALFERALS 452 (774)
Q Consensus 428 ~~ya~~l~~~gd-~~~Ar~lfEraL~ 452 (774)
...+..+..+|+ +++|...|++|+.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 677777777774 4777777777775
No 146
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.73 E-value=3.7e-07 Score=80.80 Aligned_cols=115 Identities=13% Similarity=0.078 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004093 320 EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMA 399 (774)
Q Consensus 320 ~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE 399 (774)
...|+.++..+...|++++|..+|++++...+. ...+|..++..+.+.+++++|..+|+++++..+....++...+.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 456667777777777777777777777776664 4566777777777777777777777777765555566666666665
Q ss_pred HhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 004093 400 FCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSR 436 (774)
Q Consensus 400 ~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~ 436 (774)
... |+++.|...|++++...|+++..+..++..+..
T Consensus 88 ~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQ-GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHh-cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 553 677777777777777777776666555555443
No 147
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.72 E-value=7.5e-07 Score=95.90 Aligned_cols=184 Identities=9% Similarity=0.050 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG-AIAAAKKLYESLLTDSVNTTALAHIQFIRFL 365 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g-~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~ 365 (774)
++|-.+...+.+.+..++|+++++++|..+|++..+|.....++...+ .++++...+++++..+|. ...+|.....+.
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL 133 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 444444444445555678999999999999999999999999999988 599999999999999997 678999988888
Q ss_pred HHh-c-CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHH--------HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004093 366 RRT-E-GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPK--------LAHNVFEAGLKRFMHEPAYILEYADFLS 435 (774)
Q Consensus 366 ~r~-~-~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~--------~A~~ife~al~~~p~~~~l~~~ya~~l~ 435 (774)
.+. + +.+++..++.++++..+.++++|..-..+.... +..+ .+.+.++++++.+|.|...|.....++.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l-~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHF-STLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-ccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 777 6 889999999999998877899998765544333 3344 8999999999999999999988887777
Q ss_pred hcCC-------hhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhC
Q 004093 436 RLND-------DRNIRALFERALSSLPPEESIEVWKRFTQFEQMYG 474 (774)
Q Consensus 436 ~~gd-------~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~G 474 (774)
..+. ++++..+++++|...| .....|....-+-...|
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~P--~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLIP--HNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTT
T ss_pred hccccccchHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcC
Confidence 7776 6899999999999988 45677765443433444
No 148
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.70 E-value=8.4e-08 Score=83.52 Aligned_cols=105 Identities=12% Similarity=0.078 Sum_probs=92.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC-CcHHHHHH
Q 004093 282 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN-TTALAHIQ 360 (774)
Q Consensus 282 ~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~-~~~~~~~~ 360 (774)
+|.+..+|+.++..+...|++++|...|++++...|.+...|+.++.++...|++++|...|+++++..+. ....+|..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57788899999999999999999999999999999999999999999999999999999999999988775 03678888
Q ss_pred HHHHHHHh-cCHHHHHHHHHHHhcCCC
Q 004093 361 FIRFLRRT-EGVEAARKYFLDARKSPN 386 (774)
Q Consensus 361 ~a~~~~r~-~~~~~Ar~if~~al~~~~ 386 (774)
++..+... |++++|++.|++++...+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999999 999999999999887544
No 149
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.70 E-value=5.9e-07 Score=89.81 Aligned_cols=178 Identities=12% Similarity=0.015 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc----CHHHHHHHH
Q 004093 303 DAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE----GVEAARKYF 378 (774)
Q Consensus 303 e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~----~~~~Ar~if 378 (774)
.+|.+.|+++... .+...++.++.++...+++++|...|+++++.. ...++..++.++.. + ++++|..+|
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3578899999986 778889999999999999999999999999875 46788888888877 6 899999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHh----cCChhHHHHHHHH
Q 004093 379 LDARKSPNFTYHVYVAYALMAFC---QDKDPKLAHNVFEAGLKRFMH--EPAYILEYADFLSR----LNDDRNIRALFER 449 (774)
Q Consensus 379 ~~al~~~~~~~~~~i~~A~lE~~---~~gd~~~A~~ife~al~~~p~--~~~l~~~ya~~l~~----~gd~~~Ar~lfEr 449 (774)
+++.+.. ....+..++.+... ..+++++|.+.|+++++..+. .+..+..++.++.. .+++++|..+|++
T Consensus 77 ~~A~~~g--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 77 EKAVEAG--SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHHTT--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHHCC--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9998764 47788888877443 147999999999999987663 37777788888887 7899999999999
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHc
Q 004093 450 ALSSLPPEESIEVWKRFTQFEQMYG-----DLDSTLKVEQRRKEAL 490 (774)
Q Consensus 450 aL~~~p~e~~~~lw~~~~~fE~~~G-----d~~~i~kv~~R~~~~~ 490 (774)
++.. +. .....+..-..++.-.| |.+.+...++++.+.=
T Consensus 155 A~~~-~~-~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL-SR-TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT-SC-TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc-CC-CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 9987 21 11222222233333335 8899999998888763
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.69 E-value=5.1e-06 Score=88.88 Aligned_cols=186 Identities=10% Similarity=-0.054 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHH
Q 004093 269 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGS--IDAAIKVFQRALKALPDSEMLRYAFAELEESRGA-IAAAKKLYES 345 (774)
Q Consensus 269 ~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~--~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~-~e~A~~iyek 345 (774)
+..+.++++++..+|.++.+|..-..++...++ ++++++++.+++...|.+...|....-+....|. ++++.+.+++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~ 170 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS 170 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 345678999999999999999999999988884 8999999999999999999999988888888887 6899999999
Q ss_pred HhcCCCCCcHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-------
Q 004093 346 LLTDSVNTTALAHIQFIRFLRRT--------------EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDK------- 404 (774)
Q Consensus 346 ~l~~~~~~~~~~~~~~a~~~~r~--------------~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~g------- 404 (774)
+++.+|. +..+|.....+.... +.++++.+.+.+++...+....+|....-+.....|
T Consensus 171 ~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~ 249 (331)
T 3dss_A 171 LITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVE 249 (331)
T ss_dssp HHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHH
T ss_pred HHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchH
Confidence 9999997 578998888777766 558899999999998777778888644333333223
Q ss_pred ---CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH---hcCChhHHHHHHHHHHhcCC
Q 004093 405 ---DPKLAHNVFEAGLKRFMHEPAYILEYADFLS---RLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 405 ---d~~~A~~ife~al~~~p~~~~l~~~ya~~l~---~~gd~~~Ar~lfEraL~~~p 455 (774)
-++.+++.++.+++..|++.=.+...+.+.. ..+..++++.++++.++..|
T Consensus 250 ~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 250 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 3678999999999999998533444444433 34667899999999998877
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.68 E-value=2.6e-07 Score=84.48 Aligned_cols=99 Identities=13% Similarity=0.061 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc------HHHHH
Q 004093 286 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT------ALAHI 359 (774)
Q Consensus 286 ~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~------~~~~~ 359 (774)
...|.+++..+.+.|++++|++.|++|+..+|++..+|..+|.++...|++++|...|+++++..|... ..+|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456778899999999999999999999999999999999999999999999999999999998765321 23455
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcC
Q 004093 360 QFIRFLRRTEGVEAARKYFLDARKS 384 (774)
Q Consensus 360 ~~a~~~~r~~~~~~Ar~if~~al~~ 384 (774)
.++.++...++++.|...|++++..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555666666666666666666553
No 152
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.68 E-value=6.1e-08 Score=102.84 Aligned_cols=201 Identities=14% Similarity=0.040 Sum_probs=150.7
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
+....+..+++++.+..+.. ++...+++++|...|.++ +.++...|++++|...|++
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHH
Confidence 34566778888888877642 111147888888888886 4566788999999999999
Q ss_pred HhcCCCC-----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC----CC--CHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 004093 346 LLTDSVN-----TTALAHIQFIRFLRRTEGVEAARKYFLDARKSP----NF--TYHVYVAYALMAFCQDKDPKLAHNVFE 414 (774)
Q Consensus 346 ~l~~~~~-----~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~----~~--~~~~~i~~A~lE~~~~gd~~~A~~ife 414 (774)
++...+. ....++...+.++...|++++|...|++|+... .. ...++...+.+. .. |+++.|...|+
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~-~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM-EP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-TT-TCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-Hc-CCHHHHHHHHH
Confidence 9976432 124577888889999999999999999998641 11 245677777764 44 99999999999
Q ss_pred HHHHHcCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004093 415 AGLKRFMHE------PAYILEYADFLSRLNDDRNIRALFERALSSLPPE----ESIEVWKRFTQFEQMYGDLDSTLKVEQ 484 (774)
Q Consensus 415 ~al~~~p~~------~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e----~~~~lw~~~~~fE~~~Gd~~~i~kv~~ 484 (774)
+++..++.. ...+...+.++..+|++++|..+|++++...+.. .....|..........|+.+.+...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999986542 4567788999999999999999999999864311 112355555555556799999999999
Q ss_pred HHHHHccc
Q 004093 485 RRKEALSR 492 (774)
Q Consensus 485 R~~~~~pk 492 (774)
++. ..|.
T Consensus 220 ~al-~~p~ 226 (307)
T 2ifu_A 220 ESY-SIPG 226 (307)
T ss_dssp HHT-TSTT
T ss_pred HHh-CCCC
Confidence 999 7773
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=4.9e-07 Score=83.14 Aligned_cols=118 Identities=9% Similarity=-0.126 Sum_probs=80.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHH
Q 004093 316 LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT--TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYV 393 (774)
Q Consensus 316 ~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~--~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i 393 (774)
.|.+...|+..+..+...|++++|...|+++++..+.. ...+|..++..+...+++++|...|+++++..+....+|.
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 35566777777777777788888888888888777652 1456667777777777777777777777765555566666
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004093 394 AYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFL 434 (774)
Q Consensus 394 ~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l 434 (774)
..+.+.+.. |+++.|.+.|+++++..|++..++..+..+.
T Consensus 104 ~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKL-GRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHH-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 666665554 6777777777777777777666665555543
No 154
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.67 E-value=1.1e-08 Score=110.43 Aligned_cols=154 Identities=10% Similarity=-0.006 Sum_probs=72.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 004093 283 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 362 (774)
Q Consensus 283 p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a 362 (774)
+.....|...+..+.+.|++++|+..|++|+...|.+..+ ...++++++...+. ..+|..++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--------~~~~~~~~~~~~l~----------~~~~~nla 237 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMF--------QLYGKYQDMALAVK----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHH--------TCCHHHHHHHHHHH----------THHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhh--------hhcccHHHHHHHHH----------HHHHHHHH
Confidence 4456778899999999999999999999999999976521 01111122211110 12555556
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-hcCChh
Q 004093 363 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLS-RLNDDR 441 (774)
Q Consensus 363 ~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~-~~gd~~ 441 (774)
.++.+.+++++|+..|+++++..+....+|...+...... |+++.|+..|+++++..|+++..+..+..+.. ..+..+
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~-g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAEL-GQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666655444556666655554443 66666666666666666665555554444422 234455
Q ss_pred HHHHHHHHHHhcCC
Q 004093 442 NIRALFERALSSLP 455 (774)
Q Consensus 442 ~Ar~lfEraL~~~p 455 (774)
.++.+|.+++...|
T Consensus 317 ~a~~~~~~~l~~~p 330 (338)
T 2if4_A 317 KQKEMYKGIFKGKD 330 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHhhCCCC
Confidence 56666666665544
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.67 E-value=1.5e-07 Score=89.58 Aligned_cols=102 Identities=15% Similarity=0.000 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004093 321 MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAF 400 (774)
Q Consensus 321 ~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~ 400 (774)
..|+..+..+...|++++|...|++++...|. ...+|..++.++.+.|++++|...|+++++..+....+|...+.+.+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34444455555555555555555555554443 34444444444444444444444444444443334444444444433
Q ss_pred hcCCCHHHHHHHHHHHHHHcCCCH
Q 004093 401 CQDKDPKLAHNVFEAGLKRFMHEP 424 (774)
Q Consensus 401 ~~~gd~~~A~~ife~al~~~p~~~ 424 (774)
.. |+++.|++.|+++++..|++.
T Consensus 91 ~~-g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 91 DM-ADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp HT-TCHHHHHHHHHHHHHHHSSSC
T ss_pred Hc-cCHHHHHHHHHHHHHhCCCch
Confidence 32 444444444444444444443
No 156
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.67 E-value=5.7e-08 Score=109.44 Aligned_cols=163 Identities=12% Similarity=0.002 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 004093 269 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 348 (774)
Q Consensus 269 ~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~ 348 (774)
+++...|++++...|.....|...+..+.+.|++++|+..|++|+..+|.+..++- +.... ..
T Consensus 251 ~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~------------~~~~~-~~---- 313 (457)
T 1kt0_A 251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSE------------KESKA-SE---- 313 (457)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH------------HHHHH-HH----
T ss_pred ccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCCh------------HHHHH-HH----
Confidence 34455677888888889999999999999999999999999999999887731100 00000 00
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHH
Q 004093 349 DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL 428 (774)
Q Consensus 349 ~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~ 428 (774)
+ ....+|..++.++.+.+++++|+..|+++++..+....+|...+.+.+.. |+++.|+..|+++++..|++...+.
T Consensus 314 --~-~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~-g~~~~A~~~~~~al~l~P~~~~a~~ 389 (457)
T 1kt0_A 314 --S-FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM-NEFESAKGDFEKVLEVNPQNKAARL 389 (457)
T ss_dssp --H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC----CHHH
T ss_pred --H-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 0 01234444444555555555555555555544444455555555444443 5555555555555555555555555
Q ss_pred HHHHHHHhcCChhHH-HHHHHHHHh
Q 004093 429 EYADFLSRLNDDRNI-RALFERALS 452 (774)
Q Consensus 429 ~ya~~l~~~gd~~~A-r~lfEraL~ 452 (774)
.++.++..+++.+++ +.+|.+.+.
T Consensus 390 ~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 390 QISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555544433 234444443
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.67 E-value=3.7e-08 Score=97.00 Aligned_cols=118 Identities=14% Similarity=-0.005 Sum_probs=102.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 283 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE----------------MLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 283 p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~----------------~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
+.....|...+..+...|++++|...|++++...|.+. .+|+.++.++...|++++|...|+++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34457788899999999999999999999999988776 78899999999999999999999999
Q ss_pred hcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 004093 347 LTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFC 401 (774)
Q Consensus 347 l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~ 401 (774)
+...|. ...+|..++..+...|++++|+..|+++++..+....++...+.+...
T Consensus 115 l~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 115 LKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 999886 578999999999999999999999999998766667777777666444
No 158
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.67 E-value=4.6e-07 Score=94.57 Aligned_cols=191 Identities=7% Similarity=-0.140 Sum_probs=151.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHhCCHHHHHHHHHHHhcCCCC------------------
Q 004093 298 KSGSIDAAIKVFQRALKALPDSEMLRYAF-------AELEESRGAIAAAKKLYESLLTDSVN------------------ 352 (774)
Q Consensus 298 ~~g~~e~A~~v~erAl~~~P~~~~l~~~~-------a~l~e~~g~~e~A~~iyek~l~~~~~------------------ 352 (774)
..++...|++.|.+++...|..++.|+.+ +.++...+...++...+.+.+...|.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 46899999999999999999999999988 67887777777777888888885543
Q ss_pred --CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC---HHHH
Q 004093 353 --TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE---PAYI 427 (774)
Q Consensus 353 --~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~---~~l~ 427 (774)
+...+++.|+..+...|++++|+.+|..++...+... +....+.+.+.. ++++.|+..|+.++... ++ ...+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~-~r~~dA~~~l~~a~~~~-d~~~~~~a~ 174 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAA-ERWTDVIDQVKSAGKWP-DKFLAGAAG 174 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHT-TCHHHHHHHHTTGGGCS-CHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHc-CCHHHHHHHHHHhhccC-CcccHHHHH
Confidence 1246888999999999999999999999887655434 555566665664 99999999999776532 22 2356
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 004093 428 LEYADFLSRLNDDRNIRALFERALSSLP-PEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 428 ~~ya~~l~~~gd~~~Ar~lfEraL~~~p-~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~p 491 (774)
...+..+..+|++++|...|++++.... +....+.+........+.|+.+.+..+++++....|
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 6778889999999999999999996431 222444555555555689999999999999999998
No 159
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.66 E-value=2.5e-07 Score=102.14 Aligned_cols=304 Identities=10% Similarity=0.066 Sum_probs=115.7
Q ss_pred CChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhccCCccH
Q 004093 36 LPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQ 115 (774)
Q Consensus 36 ~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~~~lW~~Yl~~~~~~~~~~~~~~~ 115 (774)
+++++|..++++. +. ..+|..+++...+.+++++|.+.|.|| ++...|..-+.-....+ ..
T Consensus 17 ~~ld~A~~fae~~-----~~----~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g------~~ 77 (449)
T 1b89_A 17 GNLDRAYEFAERC-----NE----PAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSG------NW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCC------CH
Confidence 3588888888887 23 457888888888888888888888775 34444444444333322 24
Q ss_pred HHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHhhH
Q 004093 116 EETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSR 195 (774)
Q Consensus 116 e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~~~e~l~~~y~~fE~~~~~ 195 (774)
+.+...++.+++..+ ...+...++.. |...++..++..+|+ .|.. . .|..
T Consensus 78 EeAi~yl~~ark~~~----~~~i~~~Li~~---------Y~Klg~l~e~e~f~~----~pn~--~-a~~~---------- 127 (449)
T 1b89_A 78 EELVKYLQMARKKAR----ESYVETELIFA---------LAKTNRLAELEEFIN----GPNN--A-HIQQ---------- 127 (449)
T ss_dssp --------------------------------------------CHHHHTTTTT----CC--------------------
T ss_pred HHHHHHHHHHHHhCc----cchhHHHHHHH---------HHHhCCHHHHHHHHc----CCcH--H-HHHH----------
Confidence 556666665555321 12233332222 223355555554443 2311 0 1110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHH
Q 004093 196 QLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTY 275 (774)
Q Consensus 196 ~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~y 275 (774)
++....+ .+.|+.|+..|.... .|.+.....-. .+..+.++.+|
T Consensus 128 -IGd~~~~--~g~yeeA~~~Y~~a~--------------------------n~~~LA~~L~~-------Lg~yq~AVea~ 171 (449)
T 1b89_A 128 -VGDRCYD--EKMYDAAKLLYNNVS--------------------------NFGRLASTLVH-------LGEYQAAVDGA 171 (449)
T ss_dssp ------------CTTTHHHHHHHTT--------------------------CHHHHHHHHHT-------TTCHHHHHHHH
T ss_pred -HHHHHHH--cCCHHHHHHHHHHhh--------------------------hHHHHHHHHHH-------hccHHHHHHHH
Confidence 0001111 345666666665311 23233222111 02345566777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcH
Q 004093 276 EQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTA 355 (774)
Q Consensus 276 eraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~ 355 (774)
+++ .++..|...+..+...|+++.|...... |...|+. ....+.++++.|.+++|.++|++++...+. ..
T Consensus 172 ~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~a-h~ 241 (449)
T 1b89_A 172 RKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERA-HM 241 (449)
T ss_dssp HHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTC-CH
T ss_pred HHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHH-HH
Confidence 777 4678888888888888888888554443 3233433 235667778888888888888888877754 56
Q ss_pred HHHHHHHHHHHH--hcCHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---------
Q 004093 356 LAHIQFIRFLRR--TEGVEAARKYFLDARKSPN-----FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR--------- 419 (774)
Q Consensus 356 ~~~~~~a~~~~r--~~~~~~Ar~if~~al~~~~-----~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~--------- 419 (774)
.+|..++..+.+ -+.+.+..+.|...+..|+ ...+.|..+..+... .++++.|....-.....
T Consensus 242 ~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~-~~e~d~A~~tm~~h~~~a~~~~~f~~ 320 (449)
T 1b89_A 242 GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK-YEEYDNAIITMMNHPTDAWKEGQFKD 320 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHH-TTCHHHHHHHHHHSTTTTCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHhCChhhhhhHHHHH
Confidence 677666655543 4566666666665555444 345666666555444 37888776644332211
Q ss_pred ---cCCCHHHHHHHHHHHH
Q 004093 420 ---FMHEPAYILEYADFLS 435 (774)
Q Consensus 420 ---~p~~~~l~~~ya~~l~ 435 (774)
.+.+.+++..-+.|++
T Consensus 321 ~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 321 IITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHCSSTHHHHHHHHHHH
T ss_pred HHhchhHHHHHHHHHHHHH
Confidence 3446677777777777
No 160
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.65 E-value=8.1e-07 Score=93.90 Aligned_cols=177 Identities=12% Similarity=0.140 Sum_probs=133.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q 004093 273 FTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP--DSEMLRYAFAELEESRGAIAAAKKLYESLLTDS 350 (774)
Q Consensus 273 ~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P--~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~ 350 (774)
..+++.+...+.....++.++..+...|++++|++++.+++...| .+..++...+.++...|+.+.|+++++++.+..
T Consensus 87 ~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~ 166 (310)
T 3mv2_B 87 EELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI 166 (310)
T ss_dssp HHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 567777766556677778889999999999999999999998887 788888888999999999999999999988877
Q ss_pred C-----CCcHHHHH--HHHHHHHHhcCHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--
Q 004093 351 V-----NTTALAHI--QFIRFLRRTEGVEAARKYFLDARKSPNF--TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR-- 419 (774)
Q Consensus 351 ~-----~~~~~~~~--~~a~~~~r~~~~~~Ar~if~~al~~~~~--~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~-- 419 (774)
+ .+...+++ .|+.+....+++..|..+|+++.+..+. .....++ .... .|++++|.++++.+++.
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~-~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQ-QRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHH-HTCHHHHHHHHHHHHSHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHH-cCCHHHHHHHHHHHHHhcc
Confidence 6 11222222 2223333334789999999998877654 2333333 2234 38999999999977766
Q ss_pred --------cCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 420 --------FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 420 --------~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
.|++++++...+.+...+|+ +|..+++++.+..|
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 37788888888777777786 78889999998877
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.65 E-value=6e-07 Score=78.66 Aligned_cols=98 Identities=12% Similarity=-0.081 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 004093 357 AHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSR 436 (774)
Q Consensus 357 ~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~ 436 (774)
.|...+..+...|++++|...|++++...+....+|...+.+.... |+++.|...|+++++..|+++..+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK-GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333344444444443332 455555555555555555555545455555555
Q ss_pred cCChhHHHHHHHHHHhcCC
Q 004093 437 LNDDRNIRALFERALSSLP 455 (774)
Q Consensus 437 ~gd~~~Ar~lfEraL~~~p 455 (774)
.|++++|+.+|++++...|
T Consensus 85 ~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCT
T ss_pred HhhHHHHHHHHHHHHHcCC
Confidence 5555555555555554444
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.64 E-value=3.1e-07 Score=83.82 Aligned_cols=105 Identities=9% Similarity=-0.141 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004093 316 LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAY 395 (774)
Q Consensus 316 ~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~ 395 (774)
.|.+...|+.++..+...|++++|...|++++...|. ...+|..++.++...++++.|...|+++++..+....+|...
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 4455566666666666666666666666666666554 345566666666666666666666666655444445555555
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCC
Q 004093 396 ALMAFCQDKDPKLAHNVFEAGLKRFMH 422 (774)
Q Consensus 396 A~lE~~~~gd~~~A~~ife~al~~~p~ 422 (774)
+.+.... |+++.|...|++++...|+
T Consensus 84 ~~~~~~~-~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEM-ESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hhHHHHHHHHHHHHHHChh
Confidence 5554443 5566666666665555443
No 163
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.63 E-value=3.1e-07 Score=89.57 Aligned_cols=154 Identities=17% Similarity=0.115 Sum_probs=96.4
Q ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC-----CCcHHHHHHHHHHHHHhcCH
Q 004093 298 KSGSIDAAIKVFQRALKALP-DSEMLRYAFAELEESRGAIAAAKKLYESLLTDSV-----NTTALAHIQFIRFLRRTEGV 371 (774)
Q Consensus 298 ~~g~~e~A~~v~erAl~~~P-~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~-----~~~~~~~~~~a~~~~r~~~~ 371 (774)
..|++++|.++++.... .| ....++..++.++...|++++|...|++++.... .....++..++..+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45677777774443333 34 4456666777777777777777777777776211 11234666677777777777
Q ss_pred HHHHHHHHHHhcC----CCC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC--CCH----HHHHHHHHHHHhcC
Q 004093 372 EAARKYFLDARKS----PNF---TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM--HEP----AYILEYADFLSRLN 438 (774)
Q Consensus 372 ~~Ar~if~~al~~----~~~---~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p--~~~----~l~~~ya~~l~~~g 438 (774)
++|+..|++++.. +.. ...++...+.+.... |+++.|...|++++.... .++ ..+...+..+...|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHF-GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 7777777777653 211 234455566655554 788888888888876422 222 22456677778888
Q ss_pred ChhHHHHHHHHHHhc
Q 004093 439 DDRNIRALFERALSS 453 (774)
Q Consensus 439 d~~~Ar~lfEraL~~ 453 (774)
++++|+.+|++++..
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888888764
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.63 E-value=1.7e-08 Score=113.86 Aligned_cols=169 Identities=9% Similarity=0.045 Sum_probs=124.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004093 300 GSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFL 379 (774)
Q Consensus 300 g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~ 379 (774)
+++++|.+.|++++...|.....|...+..+...|++++|...|++++...+.... .+- +.... ..
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~-~~~------------~~~~~-~~ 313 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG-LSE------------KESKA-SE 313 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS-CCH------------HHHHH-HH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc-CCh------------HHHHH-HH
Confidence 45667888888888888888888889999999999999999999999987665211 000 00000 00
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhH
Q 004093 380 DARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEES 459 (774)
Q Consensus 380 ~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~ 459 (774)
.....+|.+.+.+.+.. |+++.|+..|+++++..|+++..+...+..+..+|++++|+..|+++++..| ..
T Consensus 314 ------~~~~~~~~nla~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P--~~ 384 (457)
T 1kt0_A 314 ------SFLLAAFLNLAMCYLKL-REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP--QN 384 (457)
T ss_dssp ------HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----
T ss_pred ------HHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CC
Confidence 01256777778776665 9999999999999999999999999999999999999999999999999888 44
Q ss_pred HHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHcc
Q 004093 460 IEVWKRFTQFEQMYGDLDSTL-KVEQRRKEALS 491 (774)
Q Consensus 460 ~~lw~~~~~fE~~~Gd~~~i~-kv~~R~~~~~p 491 (774)
..+|..........|+..... +.++++...+.
T Consensus 385 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~~ 417 (457)
T 1kt0_A 385 KAARLQISMCQKKAKEHNERDRRIYANMFKKFA 417 (457)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 567777777777788776544 45566655554
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.61 E-value=4e-07 Score=81.46 Aligned_cols=110 Identities=15% Similarity=0.064 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC--c----HHHH
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT--T----ALAH 358 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~--~----~~~~ 358 (774)
....|+.++..+...|++++|...|++++...|.+..+++.++.++...|++++|...|++++...+.. . ..+|
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 357788899999999999999999999999999999999999999999999999999999998875531 0 4566
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004093 359 IQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAY 395 (774)
Q Consensus 359 ~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~ 395 (774)
..++..+...|+++.|...|+++++..+ ...++...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l 118 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 6666677777777777777777766544 24444433
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.61 E-value=5.2e-07 Score=81.33 Aligned_cols=107 Identities=15% Similarity=0.061 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc--HHHHHHH
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE---MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT--ALAHIQF 361 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~---~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~--~~~~~~~ 361 (774)
+.++..+..+...|++++|...|++++...|.+. ..++.++.++...|++++|...|++++...|... ..++..+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3466777777788888888888888888888776 6777788888888888888888888887776521 4566666
Q ss_pred HHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHH
Q 004093 362 IRFLRRTEGVEAARKYFLDARKSPNFTYHVYV 393 (774)
Q Consensus 362 a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i 393 (774)
+..+...|++++|+..|+++++..+....+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 66666666666666666666664444343333
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.60 E-value=2.2e-07 Score=84.28 Aligned_cols=87 Identities=14% Similarity=0.070 Sum_probs=79.6
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
+..+.++..|++++..+|.+..+|+.++..+...|++++|+..|++|++..|.+...|+.++.++...|++++|...|++
T Consensus 31 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 110 (121)
T 1hxi_A 31 ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 110 (121)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCC
Q 004093 346 LLTDSVN 352 (774)
Q Consensus 346 ~l~~~~~ 352 (774)
+++..|.
T Consensus 111 al~~~P~ 117 (121)
T 1hxi_A 111 WLLSQPQ 117 (121)
T ss_dssp HHC----
T ss_pred HHHhCcC
Confidence 9998875
No 168
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.53 E-value=1.8e-06 Score=99.83 Aligned_cols=164 Identities=15% Similarity=0.087 Sum_probs=140.1
Q ss_pred HcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 004093 298 KSGS-IDAAIKVFQRALKALPDSEMLRYAFAELEESRGA----------IAAAKKLYESLLTDSVNTTALAHIQFIRFLR 366 (774)
Q Consensus 298 ~~g~-~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~----------~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~ 366 (774)
+.+. .++|.+.+++++..+|++..+|...+.+....++ ++++...|++++..+|. ...+|....-...
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~ 118 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS 118 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3444 4689999999999999999999999998888877 99999999999999997 6789999999998
Q ss_pred Hhc--CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc------
Q 004093 367 RTE--GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDK-DPKLAHNVFEAGLKRFMHEPAYILEYADFLSRL------ 437 (774)
Q Consensus 367 r~~--~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~g-d~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~------ 437 (774)
+.+ +++++.+.+.++++..+.+.++|.....+.... + ..+.+.+.++++++.+|.+...|......+..+
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l-~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 888 779999999999998777899999877766665 6 889999999999999999999997776666654
Q ss_pred --------CChhHHHHHHHHHHhcCCchhHHHHHHH
Q 004093 438 --------NDDRNIRALFERALSSLPPEESIEVWKR 465 (774)
Q Consensus 438 --------gd~~~Ar~lfEraL~~~p~e~~~~lw~~ 465 (774)
+.++++.+++++||...|. ....|..
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~--~~saW~y 231 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPN--DQSAWFY 231 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSS--CSHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCC--CccHHHH
Confidence 3468899999999998884 3466653
No 169
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.52 E-value=1.7e-06 Score=91.52 Aligned_cols=184 Identities=13% Similarity=0.067 Sum_probs=138.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 004093 305 AIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSV-NTTALAHIQFIRFLRRTEGVEAARKYFLDARK 383 (774)
Q Consensus 305 A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~-~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~ 383 (774)
|+..|++.+...+.+...++..|.++...|++++|..++.+.+...+ .....++...++++.+.|+.+.|+++++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77888888876555666667889999999999999999999998876 22567889999999999999999999999887
Q ss_pred CCC------CCHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 004093 384 SPN------FTYHVYVAYALMAFCQ-DKDPKLAHNVFEAGLKRFMH--EPAYILEYADFLSRLNDDRNIRALFERALSSL 454 (774)
Q Consensus 384 ~~~------~~~~~~i~~A~lE~~~-~gd~~~A~~ife~al~~~p~--~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~ 454 (774)
..+ ....+++.-+.+.... .+++..|..+|+.+...+|+ ++.+++. .+..+|++++|...+++.++..
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence 654 2233333323222222 23889999999999999987 3334333 7888999999999999777653
Q ss_pred Cc--------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc
Q 004093 455 PP--------EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRT 493 (774)
Q Consensus 455 p~--------e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk~ 493 (774)
|. .+........+.+....|+ .+..+..++.+..|++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 21 1356666666667777897 6678888888888854
No 170
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.50 E-value=2.7e-07 Score=101.86 Aligned_cols=284 Identities=11% Similarity=0.039 Sum_probs=132.0
Q ss_pred HcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCc
Q 004093 72 AVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPA 151 (774)
Q Consensus 72 ~~~n~~~a~~ifeRaL~~~p~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~ 151 (774)
+.|++++|.+.++|+ +...+|...++.....++ .+.+.++|.++- | ...|...+.-.
T Consensus 15 ~~~~ld~A~~fae~~----~~~~vWs~La~A~l~~g~------~~eAIdsfika~-----D---~~~y~~V~~~a----- 71 (449)
T 1b89_A 15 HIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGM------VKEAIDSYIKAD-----D---PSSYMEVVQAA----- 71 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC----CChHHHHHHHHHHHHcCC------HHHHHHHHHcCC-----C---HHHHHHHHHHH-----
Confidence 567899999999998 555799988888776554 567777786432 2 23444444422
Q ss_pred CchHHHhHHHHHHHHHHHHHHccc-CccH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004093 152 LNAQEESQRMIAIRKAYQRAVVTP-THHV-EQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWN 229 (774)
Q Consensus 152 ~~~~~~~~~~~~ar~vYqral~~P-~~~~-e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~ 229 (774)
+..++++++++.|+.+.+.. ...+ ..+-..|.+ .+++.++..
T Consensus 72 ----e~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~K-----------------lg~l~e~e~--------------- 115 (449)
T 1b89_A 72 ----NTSGNWEELVKYLQMARKKARESYVETELIFALAK-----------------TNRLAELEE--------------- 115 (449)
T ss_dssp ----------------------------------------------------------CHHHHTT---------------
T ss_pred ----HhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH-----------------hCCHHHHHH---------------
Confidence 23578888888888887531 1111 011111111 011111111
Q ss_pred cCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004093 230 MLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVF 309 (774)
Q Consensus 230 ~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~ 309 (774)
.+. .|.. ..|..-.... -..+..+.+..+|.++ +.|..++..+.+.|++++|.+.|
T Consensus 116 f~~-~pn~--------~a~~~IGd~~-------~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~ 171 (449)
T 1b89_A 116 FIN-GPNN--------AHIQQVGDRC-------YDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGA 171 (449)
T ss_dssp TTT-CC-------------------------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHc-CCcH--------HHHHHHHHHH-------HHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHH
Confidence 111 1221 1332221111 1113445567788866 58999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCH
Q 004093 310 QRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTY 389 (774)
Q Consensus 310 erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~ 389 (774)
++| .+...|...+......|+++.|..+...++ ..+. -....+.++.+.|.+++|..+|+.+++..+...
T Consensus 172 ~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad----~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~ 241 (449)
T 1b89_A 172 RKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHAD----ELEELINYYQDRGYFEELITMLEAALGLERAHM 241 (449)
T ss_dssp HHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHH----HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH
T ss_pred HHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHh----hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHH
Confidence 999 478899999999999999999987776533 4432 233577888999999999999999999888878
Q ss_pred HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004093 390 HVYVAYALMAFCQ-DKDPKLAHNVFEAGLKRFM-----HEPAYILEYADFLSRLNDDRNIRALFE 448 (774)
Q Consensus 390 ~~~i~~A~lE~~~-~gd~~~A~~ife~al~~~p-----~~~~l~~~ya~~l~~~gd~~~Ar~lfE 448 (774)
.+|..++.+.... .+......+.|...+...+ +++.+|..++-++.+.+++++|....-
T Consensus 242 ~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 242 GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 8888877764432 2445556677766666556 678899999999999999999876433
No 171
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.50 E-value=2.6e-07 Score=87.70 Aligned_cols=96 Identities=10% Similarity=-0.008 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKA------------------LPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 348 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~------------------~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~ 348 (774)
..|...+..+.+.|++++|+..|.+|+.. .|....+|+.++..+...|++++|...|++++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 56677777777888888888888888876 333334444444444444444444444444444
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 004093 349 DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARK 383 (774)
Q Consensus 349 ~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~ 383 (774)
..|. ...+|..++..+...|+++.|...|++++.
T Consensus 92 ~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 92 REET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 4443 234444444444444444444444444443
No 172
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.50 E-value=1.1e-06 Score=85.60 Aligned_cols=136 Identities=11% Similarity=0.005 Sum_probs=109.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC---CCC--
Q 004093 284 HYPDIWYDYATWNAKSGSIDAAIKVFQRALKAL------PDSEMLRYAFAELEESRGAIAAAKKLYESLLTD---SVN-- 352 (774)
Q Consensus 284 ~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~------P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~---~~~-- 352 (774)
....+|..++.++...|++++|...|++++... +.....+..++.++...|++++|...|++++.. .++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 677899999999999999999999999999842 334567788899999999999999999999976 331
Q ss_pred -CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC----CCC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Q 004093 353 -TTALAHIQFIRFLRRTEGVEAARKYFLDARKS----PNF--TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF 420 (774)
Q Consensus 353 -~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~----~~~--~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~ 420 (774)
....++..++..+...|++++|+..|++++.. +.. ...++...+.+.... |+++.|.+.|++++...
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE-KNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 12456788889999999999999999999853 211 133456667665564 99999999999999864
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.48 E-value=1.3e-07 Score=107.16 Aligned_cols=114 Identities=15% Similarity=0.042 Sum_probs=96.3
Q ss_pred hhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004093 265 ASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYE 344 (774)
Q Consensus 265 ~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iye 344 (774)
.+..+.+...|++++...|.+..+|..++..+.+.|++++|++.|++|++..|.+...|+.+|.++...|++++|...|+
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 98 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 98 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcHHHHHHHHHH--HHHhcCHHHHHHHHH
Q 004093 345 SLLTDSVNTTALAHIQFIRF--LRRTEGVEAARKYFL 379 (774)
Q Consensus 345 k~l~~~~~~~~~~~~~~a~~--~~r~~~~~~Ar~if~ 379 (774)
++++..|. ...+|..++.. +.+.+++++|..+++
T Consensus 99 ~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 99 TVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99998876 34566666665 777888999999988
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.46 E-value=2.7e-06 Score=76.49 Aligned_cols=95 Identities=9% Similarity=-0.002 Sum_probs=84.7
Q ss_pred chHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYP---DIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAK 340 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~---~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~---~~l~~~~a~l~e~~g~~e~A~ 340 (774)
..+.+...|++++...|.++ .+|+.++..+...|++++|+..|++++...|++ ...++.++.++...|++++|.
T Consensus 17 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~ 96 (129)
T 2xev_A 17 KYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQ 96 (129)
T ss_dssp CHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 45778899999999999988 899999999999999999999999999999998 888999999999999999999
Q ss_pred HHHHHHhcCCCCCcHHHHHHHH
Q 004093 341 KLYESLLTDSVNTTALAHIQFI 362 (774)
Q Consensus 341 ~iyek~l~~~~~~~~~~~~~~a 362 (774)
..|++++...|. ...+.....
T Consensus 97 ~~~~~~~~~~p~-~~~~~~a~~ 117 (129)
T 2xev_A 97 QTLQQVATQYPG-SDAARVAQE 117 (129)
T ss_dssp HHHHHHHHHSTT-SHHHHHHHH
T ss_pred HHHHHHHHHCCC-ChHHHHHHH
Confidence 999999999886 344444333
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.46 E-value=1.2e-06 Score=78.28 Aligned_cols=107 Identities=10% Similarity=0.026 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC-------HHHHH
Q 004093 321 MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT-------YHVYV 393 (774)
Q Consensus 321 ~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~-------~~~~i 393 (774)
..|+.++..+...|++++|...|++++...+. ...+|..++..+...++++.|...|++++...+.. ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 44555666666666666666666666666554 34556666666666666666666666665532221 44455
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHH
Q 004093 394 AYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEY 430 (774)
Q Consensus 394 ~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~y 430 (774)
..+.+.... |+++.|.+.|+++++..| ++..+..+
T Consensus 84 ~la~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~l 118 (131)
T 1elr_A 84 RIGNSYFKE-EKYKDAIHFYNKSLAEHR-TPDVLKKC 118 (131)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHCC-CHHHHHHH
T ss_pred HHHHHHHHh-ccHHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 555544443 566666666666665555 34444333
No 176
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.45 E-value=1.8e-06 Score=82.07 Aligned_cols=97 Identities=13% Similarity=-0.002 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHhCCHHHHHHHHHHHhcC----
Q 004093 286 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPD-------SEM-----LRYAFAELEESRGAIAAAKKLYESLLTD---- 349 (774)
Q Consensus 286 ~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~-------~~~-----l~~~~a~l~e~~g~~e~A~~iyek~l~~---- 349 (774)
...|...+..+.+.|++++|+..|.+||+.+|+ +.. +|...+..+..+|++++|...|+++|..
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 356778888888889999999999999998888 443 7888888888888888888888888877
Q ss_pred ---CCCCcHHHH----HHHHHHHHHhcCHHHHHHHHHHHhc
Q 004093 350 ---SVNTTALAH----IQFIRFLRRTEGVEAARKYFLDARK 383 (774)
Q Consensus 350 ---~~~~~~~~~----~~~a~~~~r~~~~~~Ar~if~~al~ 383 (774)
+|+ ...+| ...+..+...|++++|...|+++++
T Consensus 91 ~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 765 56677 7777777777777777777777765
No 177
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.45 E-value=1.5e-06 Score=77.13 Aligned_cols=81 Identities=20% Similarity=0.136 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q 004093 271 IIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS 350 (774)
Q Consensus 271 ~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~ 350 (774)
++..|++++...|.++.+|+.++..+...|++++|+..|++++...|.+...|+.++.++...|++++|+..|++++...
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 004093 351 V 351 (774)
Q Consensus 351 ~ 351 (774)
+
T Consensus 84 ~ 84 (115)
T 2kat_A 84 Q 84 (115)
T ss_dssp H
T ss_pred c
Confidence 5
No 178
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.44 E-value=2.2e-06 Score=89.90 Aligned_cols=153 Identities=13% Similarity=0.084 Sum_probs=119.7
Q ss_pred chHHHHHHHHHHHHhcCCCHHH-----HHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhC
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDI-----WYD-YATWNAKSGSIDAAIKVFQRALKALPDS------EMLRYAFAELEESRG 334 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~i-----W~~-ya~~l~~~g~~e~A~~v~erAl~~~P~~------~~l~~~~a~l~e~~g 334 (774)
..+.+...|++++...+..++. |+. .+.++...+++++|+..|++|+...+.. ..++..++.++...|
T Consensus 90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 169 (293)
T 3u3w_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG 169 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC
Confidence 4567788999999887776662 333 5677777889999999999999964432 335788999999999
Q ss_pred CHHHHHHHHHHHhcC------CCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhc
Q 004093 335 AIAAAKKLYESLLTD------SVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP------NFTYHVYVAYALMAFCQ 402 (774)
Q Consensus 335 ~~e~A~~iyek~l~~------~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~------~~~~~~~i~~A~lE~~~ 402 (774)
++++|...|+++++. .......++..++.++.+.|++++|...|+++++.. .....+|...+.+....
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~ 249 (293)
T 3u3w_A 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL 249 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 999999999999942 111134588899999999999999999999998631 22267888888876665
Q ss_pred CC-CHHHHHHHHHHHHHHc
Q 004093 403 DK-DPKLAHNVFEAGLKRF 420 (774)
Q Consensus 403 ~g-d~~~A~~ife~al~~~ 420 (774)
| ++++|.+.|++++..+
T Consensus 250 -g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 250 -EYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp -TCCHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHHH
Confidence 7 5699999999999753
No 179
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.44 E-value=1.8e-05 Score=82.88 Aligned_cols=152 Identities=13% Similarity=0.039 Sum_probs=118.7
Q ss_pred chHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhC
Q 004093 267 SNKRIIFTYEQCLMYLYHYP------DIWYDYATWNAKSGSIDAAIKVFQRALKALPDS------EMLRYAFAELEESRG 334 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~------~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~------~~l~~~~a~l~e~~g 334 (774)
..+.+...|++++...+... ..++..+.++...|++++|...|++|+...+.. ..++..++.++...|
T Consensus 90 ~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~ 169 (293)
T 2qfc_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG 169 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcC
Confidence 35566778888888766544 234556777788899999999999999865543 457788999999999
Q ss_pred CHHHHHHHHHHHhc---CCCCCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhc
Q 004093 335 AIAAAKKLYESLLT---DSVNTT---ALAHIQFIRFLRRTEGVEAARKYFLDARKSP------NFTYHVYVAYALMAFCQ 402 (774)
Q Consensus 335 ~~e~A~~iyek~l~---~~~~~~---~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~------~~~~~~~i~~A~lE~~~ 402 (774)
++++|...|+++++ ..+... ..++..++..+...|++++|...|+++++.. .....+|...+.+....
T Consensus 170 ~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~ 249 (293)
T 2qfc_A 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL 249 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 99999999999993 333211 2588899999999999999999999998632 11267788888876665
Q ss_pred CCCHHHH-HHHHHHHHHH
Q 004093 403 DKDPKLA-HNVFEAGLKR 419 (774)
Q Consensus 403 ~gd~~~A-~~ife~al~~ 419 (774)
|+++.| ...|++++..
T Consensus 250 -g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 250 -EYEEAEIEDAYKKASFF 266 (293)
T ss_dssp -TCCHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHH
Confidence 999999 8889999875
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.44 E-value=3.9e-07 Score=81.57 Aligned_cols=85 Identities=14% Similarity=0.221 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 269 KRIIFTYEQCLMY---LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 269 ~r~~~~yeraL~~---~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
+.++..|++++.. .|.+..+|+.++..+...|++++|+..|+++++..|++..+++.++.++...|++++|...|++
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 86 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLK 86 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4457889999998 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCC
Q 004093 346 LLTDSVNT 353 (774)
Q Consensus 346 ~l~~~~~~ 353 (774)
++...|..
T Consensus 87 al~~~p~~ 94 (117)
T 3k9i_A 87 IIAETSDD 94 (117)
T ss_dssp HHHHHCCC
T ss_pred HHHhCCCc
Confidence 99987763
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.43 E-value=5.5e-07 Score=101.97 Aligned_cols=164 Identities=10% Similarity=-0.049 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 366 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~ 366 (774)
..|...+..+.+.|++++|++.|++|++..|.+..+|+.++..+...|++++|...|+++++..|. ...+|..++..+.
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 85 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 85 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 345556667778999999999999999999999999999999999999999999999999999987 6789999999999
Q ss_pred HhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCCHHHHHHHHH-----------HHHHHcCC-----------
Q 004093 367 RTEGVEAARKYFLDARKSPNFTYHVYVAYALM--AFCQDKDPKLAHNVFE-----------AGLKRFMH----------- 422 (774)
Q Consensus 367 r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~l--E~~~~gd~~~A~~ife-----------~al~~~p~----------- 422 (774)
..|++++|.+.|+++++..+....++...+.+ ... .|++++|.++++ +++...|+
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~i 164 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK-QKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKV 164 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH-HHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHhccccccchhHhhhhhhhccccccccccccccccc
Confidence 99999999999999998655555566655554 334 388899999999 77765443
Q ss_pred CHHHHHHHHHHHHhcCC--hhHHHHHHHHHHh
Q 004093 423 EPAYILEYADFLSRLND--DRNIRALFERALS 452 (774)
Q Consensus 423 ~~~l~~~ya~~l~~~gd--~~~Ar~lfEraL~ 452 (774)
....+...+..+...+. ...+..+++++.+
T Consensus 165 tl~~l~~lie~l~~~~~l~e~~v~~L~~~a~e 196 (477)
T 1wao_1 165 TISFMKELMQWYKDQKKLHRKCAYQILVQVKE 196 (477)
T ss_dssp CHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 12334455555554443 3445556666654
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.42 E-value=1.2e-06 Score=82.96 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=88.0
Q ss_pred hchHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMY------------------LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFA 327 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~------------------~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a 327 (774)
+..+.++..|++++.. .|.+..+|+.++..+...|++++|+..+++++...|.+...|+.+|
T Consensus 25 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g 104 (162)
T 3rkv_A 25 KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRA 104 (162)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 3467788899999998 7788899999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 004093 328 ELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 366 (774)
Q Consensus 328 ~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~ 366 (774)
..+...|++++|...|++++...|.+...++..+..+..
T Consensus 105 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 105 KARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999743245545444443
No 183
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.41 E-value=1.5e-06 Score=75.33 Aligned_cols=99 Identities=8% Similarity=-0.077 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--CHHHHHHHHHH
Q 004093 356 LAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH--EPAYILEYADF 433 (774)
Q Consensus 356 ~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~--~~~l~~~ya~~ 433 (774)
.+|..++..+.+.+++++|...|+++++..+....+|...+.+.... |+++.|.+.|+++++..|+ +...+...+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNL-ERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 34555566666666666666666666665444566666666665554 7777777777777777777 77777777777
Q ss_pred HHhc-CChhHHHHHHHHHHhcCC
Q 004093 434 LSRL-NDDRNIRALFERALSSLP 455 (774)
Q Consensus 434 l~~~-gd~~~Ar~lfEraL~~~p 455 (774)
+... |++++|..+|++++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 7777 777777777777777665
No 184
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.39 E-value=9.1e-07 Score=83.95 Aligned_cols=87 Identities=14% Similarity=0.080 Sum_probs=76.7
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGS----------IDAAIKVFQRALKALPDSEMLRYAFAELEESRG- 334 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~----------~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g- 334 (774)
...+.++..|++++..+|.+++.|+.++..+.+.++ +++|+..|++||+.+|+....|+.++..+..+|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 345667889999999999999999999999998876 469999999999999999999999999988764
Q ss_pred ----------CHHHHHHHHHHHhcCCCC
Q 004093 335 ----------AIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 335 ----------~~e~A~~iyek~l~~~~~ 352 (774)
++++|...|+++++.+|.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 788888999999888886
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.39 E-value=2.2e-06 Score=93.62 Aligned_cols=139 Identities=11% Similarity=-0.026 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 004093 286 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 365 (774)
Q Consensus 286 ~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~ 365 (774)
...|...+..+.+.|++++|++.|++|++..+... .... ++......+. ...+|..++..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------~~~~-------~~~~~~~~~~-~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------AAAE-------DADGAKLQPV-ALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------HHSC-------HHHHGGGHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------cccC-------hHHHHHHHHH-HHHHHHHHHHHH
Confidence 35688899999999999999999999998644321 0001 2222222222 345777777777
Q ss_pred HHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHH
Q 004093 366 RRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIR 444 (774)
Q Consensus 366 ~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar 444 (774)
.+.+++++|...|++|++..+....+|...+.+.+.. |++++|++.|+++++..|++..++..++.++..+++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGL-KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888776666677777777765554 78888888888888888888777777777777777665554
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=9.6e-06 Score=89.19 Aligned_cols=185 Identities=8% Similarity=-0.017 Sum_probs=92.4
Q ss_pred chHHHHHHHHHHHHhcCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYP-----------------DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE------MLR 323 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~-----------------~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~------~l~ 323 (774)
..+.+...|.+++...+... .+...++..+...|++++|.+.|.+++...+... .+.
T Consensus 19 ~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 98 (434)
T 4b4t_Q 19 QYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLK 98 (434)
T ss_dssp CHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 44555566666665554322 2345556666666666666666666655433211 122
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcCCC-----CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC------CCCCHHHH
Q 004093 324 YAFAELEESRGAIAAAKKLYESLLTDSV-----NTTALAHIQFIRFLRRTEGVEAARKYFLDARKS------PNFTYHVY 392 (774)
Q Consensus 324 ~~~a~l~e~~g~~e~A~~iyek~l~~~~-----~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~------~~~~~~~~ 392 (774)
..++.++...|+++.|..+|++++.... .....++..++.++...|++++|..++++++.. ......++
T Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 178 (434)
T 4b4t_Q 99 TLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVH 178 (434)
T ss_dssp HHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 2233333344566666666666554211 112345555666666666666666666655431 11123444
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHH---cCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004093 393 VAYALMAFCQDKDPKLAHNVFEAGLKR---FMHEP----AYILEYADFLSRLNDDRNIRALFERALS 452 (774)
Q Consensus 393 i~~A~lE~~~~gd~~~A~~ife~al~~---~p~~~----~l~~~ya~~l~~~gd~~~Ar~lfEraL~ 452 (774)
+..+.+.... |++++|+.+|++++.. .++.+ .++...+.++...+++.+|...|..++.
T Consensus 179 ~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 179 LLESKVYHKL-RNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444443333 6666666666666553 22222 2233444444555666666666666654
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.37 E-value=2.2e-06 Score=79.20 Aligned_cols=98 Identities=12% Similarity=0.057 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC-----c
Q 004093 286 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS------EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT-----T 354 (774)
Q Consensus 286 ~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~------~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~-----~ 354 (774)
..+|..++..+...|++++|...|++++...+.. ...+..++.++...|++++|...|++++...+.. .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 3567778888888889999999999888765432 1356667777777888888888888777543210 1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 004093 355 ALAHIQFIRFLRRTEGVEAARKYFLDARK 383 (774)
Q Consensus 355 ~~~~~~~a~~~~r~~~~~~Ar~if~~al~ 383 (774)
..++..++..+...|++++|...|+++++
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23445555555556666666666655543
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.37 E-value=6.4e-07 Score=96.60 Aligned_cols=118 Identities=10% Similarity=0.074 Sum_probs=68.5
Q ss_pred hchHHHHHHHHHHHHhcCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYP-----------------DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAE 328 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~-----------------~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~ 328 (774)
+..+.++..|++++...|.+. .+|+.++.++.+.|++++|+..|++++...|.+..+|+.++.
T Consensus 193 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 272 (338)
T 2if4_A 193 EKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGK 272 (338)
T ss_dssp SCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456778899999999998776 378888888888888888888888888888888888888888
Q ss_pred HHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH-HHhcCHHHHHHHHHHHhcC
Q 004093 329 LEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL-RRTEGVEAARKYFLDARKS 384 (774)
Q Consensus 329 l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~-~r~~~~~~Ar~if~~al~~ 384 (774)
.+...|++++|+..|++++...|. ...++..+..+. ...+..+.++.+|++++..
T Consensus 273 a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 273 AKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 888888888888888888887775 345555555542 2344555666666666554
No 189
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.37 E-value=4.7e-06 Score=75.97 Aligned_cols=60 Identities=5% Similarity=-0.033 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 004093 323 RYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARK 383 (774)
Q Consensus 323 ~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~ 383 (774)
+..++..+...|++++|...|+++++..|. ...+|..++..+...|++++|...|+++++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344445555555555555555555555544 344455555555555555555555555443
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.32 E-value=5e-06 Score=90.84 Aligned_cols=138 Identities=13% Similarity=-0.020 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 004093 322 LRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFC 401 (774)
Q Consensus 322 l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~ 401 (774)
.|...+..+...|++++|...|+++++..+. .. +...+.++.+..+....+|.+.|.+.+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~----~~---------------~~~~~~~~~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG----SR---------------AAAEDADGAKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HH---------------HHSCHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc----Cc---------------cccChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667888889999999999999999885432 00 0011222222222346788888888776
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHH
Q 004093 402 QDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLK 481 (774)
Q Consensus 402 ~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~k 481 (774)
. |+++.|++.|+++++..|+++..+..++..+..+|++++|...|+++++..| ....+|..+.......|+.....+
T Consensus 286 ~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P--~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 286 M-SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP--EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T-TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 9999999999999999999999999999999999999999999999999988 456777777777777776655543
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.29 E-value=8.9e-07 Score=79.22 Aligned_cols=85 Identities=12% Similarity=0.089 Sum_probs=47.5
Q ss_pred cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHH
Q 004093 299 SGSIDAAIKVFQRALKA---LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAAR 375 (774)
Q Consensus 299 ~g~~e~A~~v~erAl~~---~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar 375 (774)
.|++++|+..|+++++. .|.+..+|+.++.++...|++++|...|+++++..|. ...++..++..+...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 34555566666666665 3555555666666666666666666666666665554 3455555555555555555555
Q ss_pred HHHHHHhcC
Q 004093 376 KYFLDARKS 384 (774)
Q Consensus 376 ~if~~al~~ 384 (774)
..|++++..
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555543
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.25 E-value=3.9e-06 Score=79.70 Aligned_cols=87 Identities=16% Similarity=0.034 Sum_probs=80.6
Q ss_pred hchHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHH---
Q 004093 266 SSNKRIIFTYEQCLMYLYH-------YPD-----IWYDYATWNAKSGSIDAAIKVFQRALKA-------LPDSEMLR--- 323 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~-------~~~-----iW~~ya~~l~~~g~~e~A~~v~erAl~~-------~P~~~~l~--- 323 (774)
+..+.++..|+++|..+|. +.. +|.+.+..+.+.|++++|+..|.+||.. .|++...|
T Consensus 25 g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~ 104 (159)
T 2hr2_A 25 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA 104 (159)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHH
Confidence 3567788999999999998 444 9999999999999999999999999999 99999999
Q ss_pred -HHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 004093 324 -YAFAELEESRGAIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 324 -~~~a~l~e~~g~~e~A~~iyek~l~~~~~ 352 (774)
+..+..+...|++++|...|+++++..|.
T Consensus 105 ~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 105 VYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999998764
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.24 E-value=7.9e-06 Score=68.42 Aligned_cols=84 Identities=23% Similarity=0.328 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 004093 284 HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIR 363 (774)
Q Consensus 284 ~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~ 363 (774)
.....|+.++..+...|++++|...|++++...|.+...|+.++.++...|++++|...|++++...|. ...++..++.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999999999998886 5678877777
Q ss_pred HHHHh
Q 004093 364 FLRRT 368 (774)
Q Consensus 364 ~~~r~ 368 (774)
.+.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66544
No 194
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.22 E-value=6.9e-06 Score=75.79 Aligned_cols=132 Identities=11% Similarity=-0.058 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC------CH
Q 004093 321 MLRYAFAELEESRGAIAAAKKLYESLLTDSVNT-----TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF------TY 389 (774)
Q Consensus 321 ~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~-----~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~------~~ 389 (774)
.++..++.++...|++++|...|++++...+.. ...++..++..+...|++++|...|++++..... ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 456677888888888888888888888653321 1236677777777888888888888887753111 13
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC---CC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 004093 390 HVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM---HE---PAYILEYADFLSRLNDDRNIRALFERALSS 453 (774)
Q Consensus 390 ~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p---~~---~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~ 453 (774)
.++...+.+.... |+++.|...|++++.... +. ...+...+..+...|++++|..+|+++++.
T Consensus 90 ~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4555556655554 788888888887776532 11 233456666677777777777777777764
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.21 E-value=4.9e-06 Score=78.93 Aligned_cols=87 Identities=11% Similarity=-0.008 Sum_probs=70.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Q 004093 298 KSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGA----------IAAAKKLYESLLTDSVNTTALAHIQFIRFLRR 367 (774)
Q Consensus 298 ~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~----------~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r 367 (774)
+.+.+++|++.|+++++.+|++...|+.++..+...++ +++|+..|+++|+.+|+ ...+|..++..+..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 34567899999999999999999999999998888765 46999999999999997 67889888888887
Q ss_pred hc-----------CHHHHHHHHHHHhcCC
Q 004093 368 TE-----------GVEAARKYFLDARKSP 385 (774)
Q Consensus 368 ~~-----------~~~~Ar~if~~al~~~ 385 (774)
.| ++++|.+.|++|++..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 65 5555555555555543
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.9e-06 Score=75.11 Aligned_cols=94 Identities=11% Similarity=-0.009 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc-----HHHHH
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT-----ALAHI 359 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~-----~~~~~ 359 (774)
..+.|+..+..+...|++++|++.|++++...|.+..+|+.++.++...|++++|...|++++...|... ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999999999999988731 45566
Q ss_pred HHHHHHHHhcCHHHHHHHH
Q 004093 360 QFIRFLRRTEGVEAARKYF 378 (774)
Q Consensus 360 ~~a~~~~r~~~~~~Ar~if 378 (774)
.++..+...|..+.|...|
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 6666666666554444433
No 197
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=4.8e-05 Score=83.52 Aligned_cols=154 Identities=14% Similarity=0.194 Sum_probs=101.4
Q ss_pred chHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhC
Q 004093 267 SNKRIIFTYEQCLMYLYHYPD------IWYDYATWNAKSGSIDAAIKVFQRALKALP------DSEMLRYAFAELEESRG 334 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~------iW~~ya~~l~~~g~~e~A~~v~erAl~~~P------~~~~l~~~~a~l~e~~g 334 (774)
..+.+...|++++...+...+ +...++.++...|+.++|.+++++++...+ .-..++..+|.++...|
T Consensus 70 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 149 (434)
T 4b4t_Q 70 AKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK 149 (434)
T ss_dssp CHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc
Confidence 345566677777766554333 233344444556788888888888886532 22557778888888889
Q ss_pred CHHHHHHHHHHHhcCCC-----CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC---CCCC----HHHHHHHHHHHHhc
Q 004093 335 AIAAAKKLYESLLTDSV-----NTTALAHIQFIRFLRRTEGVEAARKYFLDARKS---PNFT----YHVYVAYALMAFCQ 402 (774)
Q Consensus 335 ~~e~A~~iyek~l~~~~-----~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~---~~~~----~~~~i~~A~lE~~~ 402 (774)
++++|..++++++.... .....++...++++...+++++|+.+|++++.. -.+. ..++...+.+. ..
T Consensus 150 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~-~~ 228 (434)
T 4b4t_Q 150 QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILH-CE 228 (434)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT-TS
T ss_pred ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH-HH
Confidence 99999888888775311 113457778888888889999999988888752 1111 23334444443 33
Q ss_pred CCCHHHHHHHHHHHHHHcC
Q 004093 403 DKDPKLAHNVFEAGLKRFM 421 (774)
Q Consensus 403 ~gd~~~A~~ife~al~~~p 421 (774)
.++++.|.+.|..++..+.
T Consensus 229 ~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 229 DKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp SSCHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhh
Confidence 4888888888888877654
No 198
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.17 E-value=0.00023 Score=73.66 Aligned_cols=108 Identities=10% Similarity=0.067 Sum_probs=89.1
Q ss_pred HHHHHHHHH--HHhcCCCCCCchhchHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh
Q 004093 245 WIAWKRLLT--FEKGNPQRIDTASSNKRIIFTYEQCLMYLYH--YPDIWYDYATWNAKS-----GSIDAAIKVFQRALKA 315 (774)
Q Consensus 245 ~~lW~~yi~--~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~--~~~iW~~ya~~l~~~-----g~~e~A~~v~erAl~~ 315 (774)
.-+|..-+. |-..+..++......+.+...++|++.++|. +..+|..++.++... |+.++|++.|+||++.
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L 233 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY 233 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh
Confidence 446765443 3223344455556778889999999999999 566999999999984 9999999999999999
Q ss_pred CCCC-HHHHHHHHHHHHHh-CCHHHHHHHHHHHhcCCCC
Q 004093 316 LPDS-EMLRYAFAELEESR-GAIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 316 ~P~~-~~l~~~~a~l~e~~-g~~e~A~~iyek~l~~~~~ 352 (774)
+|+. ...++.|++++... ++.+.+...+++++...+.
T Consensus 234 nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 234 CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 9964 99999999999874 9999999999999998775
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.11 E-value=1.1e-05 Score=70.05 Aligned_cols=71 Identities=18% Similarity=0.128 Sum_probs=64.4
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 004093 281 YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSV 351 (774)
Q Consensus 281 ~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~ 351 (774)
.+|.++.+|+.++..+...|++++|+..|+++++..|.+...|+.++.++...|++++|...|++++...+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999997643
No 200
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=98.10 E-value=7.6e-05 Score=72.81 Aligned_cols=144 Identities=14% Similarity=0.200 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHHHHHhcC-CCCCCchhchHHHH-HHHHHHHHhcC--------
Q 004093 214 AVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGN-PQRIDTASSNKRII-FTYEQCLMYLY-------- 283 (774)
Q Consensus 214 ~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n-~~~~d~~~~~~r~~-~~yeraL~~~p-------- 283 (774)
.+...+..|+..|...+... +.-++.|..||.|...+ |.+- . ....... .++++|+..+-
T Consensus 7 ~l~~~r~~fE~~l~~~l~~~--------dDPL~~w~~YIkW~ee~yP~g~-~-~~~s~L~~~lLErc~~~F~~~~rYkND 76 (202)
T 3esl_A 7 QLNQTKIAYEQRLLNDLEDM--------DDPLDLFLDYMIWISTSYIEVD-S-ESGQEVLRSTMERCLIYIQDMETYRND 76 (202)
T ss_dssp HHHHHHHHHHHHHHHTGGGC--------SCHHHHHHHHHHHHHHHHHHHC-H-HHHHHHHHHHHHHHHHHHTTCGGGTTC
T ss_pred HHHHHHHHHHHHHHhccccC--------CCchHHHHHHHHHHHHhCCCCC-C-cchhchHHHHHHHHHHHhcccccccCC
Confidence 34455667777776412111 12478999999998743 1110 0 0022344 78999998653
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHH
Q 004093 284 -HYPDIWYDYATWNAKSGSIDAAIKVFQRALKA--LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQ 360 (774)
Q Consensus 284 -~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~--~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~ 360 (774)
.+-.+|+.|+.++ ..++...+.++|.-.... .-....+|..||.+++..|++.+|..+|+..++........+...
T Consensus 77 ~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~ 155 (202)
T 3esl_A 77 PRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRS 155 (202)
T ss_dssp HHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred HHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 3558999999987 234466899999998875 457789999999999999999999999999998776533456666
Q ss_pred HHHHHHHh
Q 004093 361 FIRFLRRT 368 (774)
Q Consensus 361 ~a~~~~r~ 368 (774)
|..|..|.
T Consensus 156 ~~~F~~R~ 163 (202)
T 3esl_A 156 LSNYEDRL 163 (202)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777663
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.06 E-value=2.2e-05 Score=69.41 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 004093 304 AAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARK 383 (774)
Q Consensus 304 ~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~ 383 (774)
+|++.|+++++..|.+..+|+.++.++...|++++|...|++++...|. ...+|..++.++...|++++|+..|+++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999999988886 577888888888888999999998888876
Q ss_pred C
Q 004093 384 S 384 (774)
Q Consensus 384 ~ 384 (774)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 202
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.02 E-value=0.00053 Score=77.79 Aligned_cols=164 Identities=10% Similarity=0.063 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHhcCCCCCcHHH
Q 004093 288 IWYDYATWNAKSGSIDAAIKVFQRALKA-LPDSEMLRYAFAELEESR---------GAIAAAKKLYESLLTDSVNTTALA 357 (774)
Q Consensus 288 iW~~ya~~l~~~g~~e~A~~v~erAl~~-~P~~~~l~~~~a~l~e~~---------g~~e~A~~iyek~l~~~~~~~~~~ 357 (774)
++...+..+.+.|++++|.++|++..+. +.-+...|..+...+... +.+++|.++|+.+...........
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455567778999999999999999875 344555555555544432 237889999999887654334678
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHH
Q 004093 358 HIQFIRFLRRTEGVEAARKYFLDARKSP-NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR-FMHEPAYILEYADFLS 435 (774)
Q Consensus 358 ~~~~a~~~~r~~~~~~Ar~if~~al~~~-~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~-~p~~~~l~~~ya~~l~ 435 (774)
|..++..+.+.|++++|..+|++..+.+ ..+..+|......... .|+.+.|.++|+...+. ..-+...+...++.+.
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~-~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR-KGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999988753 2246666665544334 49999999999999875 2224567778999999
Q ss_pred hcCChhHHHHHHHHHHh
Q 004093 436 RLNDDRNIRALFERALS 452 (774)
Q Consensus 436 ~~gd~~~Ar~lfEraL~ 452 (774)
+.|+.++|..+|++.-+
T Consensus 187 ~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHH
Confidence 99999999999999876
No 203
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.93 E-value=0.00011 Score=68.66 Aligned_cols=113 Identities=17% Similarity=0.266 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhcC-CCCCCchhchHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004093 244 QWIAWKRLLTFEKGN-PQRIDTASSNKRIIFTYEQCLMYLYH---------YPDIWYDYATWNAKSGSIDAAIKVFQRAL 313 (774)
Q Consensus 244 q~~lW~~yi~~Ek~n-~~~~d~~~~~~r~~~~yeraL~~~p~---------~~~iW~~ya~~l~~~g~~e~A~~v~erAl 313 (774)
-++.|..||.|...+ |.+ . .....++++|+..+.+ +-.+|+.|+.+. +.+.++|.-..
T Consensus 25 PL~~w~~YI~W~e~~~P~g-----~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~ 92 (152)
T 4a1g_A 25 PLGEWERYIQWVEENFPEN-----K-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLY 92 (152)
T ss_dssp HHHHHHHHHHHHHTTCSSC-----T-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCC-----c-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHH
Confidence 478999999998864 322 1 2366889999987633 458999999874 23788888887
Q ss_pred Hh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Q 004093 314 KA--LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT 368 (774)
Q Consensus 314 ~~--~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~ 368 (774)
.. .-....+|..||.+++..|++.+|.++|+..++........+...|..|..|.
T Consensus 93 ~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R~ 149 (152)
T 4a1g_A 93 NHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRLFQTRL 149 (152)
T ss_dssp TTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHTC
T ss_pred HCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHh
Confidence 64 45778999999999999999999999999999887653445677777777764
No 204
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.93 E-value=0.001 Score=68.86 Aligned_cols=175 Identities=17% Similarity=0.084 Sum_probs=114.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc---------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004093 272 IFTYEQCLMYLYHYPDIWYDYATWNAKS---------------------GSIDAAIKVFQRALKALPDSEMLRYAFAELE 330 (774)
Q Consensus 272 ~~~yeraL~~~p~~~~iW~~ya~~l~~~---------------------g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~ 330 (774)
+.+|+-.+..+|.+..+-...+..+... .+...|+++|.||... .+.-++
T Consensus 52 Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y---------~~raL~ 122 (301)
T 3u64_A 52 LKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY---------ALSSLE 122 (301)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH---------HHHHHH
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH---------HHHHHH
Confidence 4678888888998876544444333321 1244677777777653 122222
Q ss_pred HHhCCHHHHH-----HHHHHHhcC-CCCC-cHHHHHHHHHHH--HH-hc------CHHHHHHHHHHHhcCCCC--CHHHH
Q 004093 331 ESRGAIAAAK-----KLYESLLTD-SVNT-TALAHIQFIRFL--RR-TE------GVEAARKYFLDARKSPNF--TYHVY 392 (774)
Q Consensus 331 e~~g~~e~A~-----~iyek~l~~-~~~~-~~~~~~~~a~~~--~r-~~------~~~~Ar~if~~al~~~~~--~~~~~ 392 (774)
.....+.++. .-++.++.. .+.+ ...+|...+..- .. .+ ..+.|+..+++|++..+. ...+|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~ 202 (301)
T 3u64_A 123 TAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVW 202 (301)
T ss_dssp HHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHH
Confidence 2222222111 123444433 2221 235664443322 11 12 368899999999997666 34577
Q ss_pred HHHHHHHHhc----CCCHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHhc-CChhHHHHHHHHHHhcCC
Q 004093 393 VAYALMAFCQ----DKDPKLAHNVFEAGLKRFMHE-PAYILEYADFLSRL-NDDRNIRALFERALSSLP 455 (774)
Q Consensus 393 i~~A~lE~~~----~gd~~~A~~ife~al~~~p~~-~~l~~~ya~~l~~~-gd~~~Ar~lfEraL~~~p 455 (774)
..++.+.+.. .|+.++|++.|++++...|+. ......|+++++.. ++.+.++.+++++|..-|
T Consensus 203 ~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 203 NVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 7777776653 489999999999999999975 89999999999985 999999999999999654
No 205
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=97.87 E-value=0.00017 Score=68.36 Aligned_cols=114 Identities=14% Similarity=0.248 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhcC-CCCCCchhchHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004093 245 WIAWKRLLTFEKGN-PQRIDTASSNKRIIFTYEQCLMYLYH---------YPDIWYDYATWNAKSGSIDAAIKVFQRALK 314 (774)
Q Consensus 245 ~~lW~~yi~~Ek~n-~~~~d~~~~~~r~~~~yeraL~~~p~---------~~~iW~~ya~~l~~~g~~e~A~~v~erAl~ 314 (774)
+..|..||.|...+ |..- .......++++|+..+.+ +-.+|+.|+.+. + .+.++|.-...
T Consensus 19 L~~w~~yIkW~e~~~p~~~----~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~---~p~~if~~L~~ 88 (164)
T 2wvi_A 19 LDVWDRYISWTEQNYPQGG----KESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---N---EPLDMYSYLHN 88 (164)
T ss_dssp HHHHHHHHHHHHHHCCC--------CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---S---CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCcCCC----ccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---C---CHHHHHHHHHH
Confidence 78999999998753 3211 112245689999987643 458999999875 3 36778888776
Q ss_pred h--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Q 004093 315 A--LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT 368 (774)
Q Consensus 315 ~--~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~ 368 (774)
. .-....+|..||.+++..|++.+|.+||+..++........+...+..|..|.
T Consensus 89 ~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~~R~ 144 (164)
T 2wvi_A 89 QGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQARV 144 (164)
T ss_dssp TTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 4 45778999999999999999999999999999877653345667777777665
No 206
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.82 E-value=0.00032 Score=69.52 Aligned_cols=133 Identities=20% Similarity=0.323 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhhhc-cCCCCCCCCchhHHHHHHHHHHHHHHhcC-CCCCCchhchHHHHHHHHHHHHhcCC---------
Q 004093 216 YRERKKYCEEIDWN-MLAVPPTGSYKEEQQWIAWKRLLTFEKGN-PQRIDTASSNKRIIFTYEQCLMYLYH--------- 284 (774)
Q Consensus 216 ~k~~~~~~~~L~~~-~~~~pP~~~~~~~~q~~lW~~yi~~Ek~n-~~~~d~~~~~~r~~~~yeraL~~~p~--------- 284 (774)
...+..|+..|... .... -++.|..||.|...+ |.+.. .......++++|+..+.+
T Consensus 52 ~~~r~~fE~~i~~~~~~dD----------PL~~w~~YIkW~ee~yP~g~~---~~s~L~~lLErc~~~F~~~~rYknD~R 118 (223)
T 4aez_C 52 QKERMGHERKIETSESLDD----------PLQVWIDYIKWTLDNFPQGET---KTSGLVTLLERCTREFVRNPLYKDDVR 118 (223)
T ss_dssp HHHHHHHHHHHHHGGGSSC----------THHHHHHHHHHHHHHCTTCCC---TTTCHHHHHHHHHHHTTTCGGGTTCHH
T ss_pred HHHHHHHHHHHHhcccCCC----------ChHHHHHHHHHHHHhCcCCCc---chhhHHHHHHHHHHHhcccccccCCHH
Confidence 44556677777531 1112 267999999998753 32211 112345789999997643
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKA--LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 362 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~--~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a 362 (774)
+-.+|+.|+.+. +.+.++|.-.... .-....+|..||.+++..|++.+|..||+..++........+...|.
T Consensus 119 yLklWl~Ya~~~------~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~ 192 (223)
T 4aez_C 119 YLRIWMQYVNYI------DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQ 192 (223)
T ss_dssp HHHHHHHHHTTC------SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHH
T ss_pred HHHHHHHHHHcc------CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 458999999863 3577888888775 45778999999999999999999999999999876543345666777
Q ss_pred HHHHH
Q 004093 363 RFLRR 367 (774)
Q Consensus 363 ~~~~r 367 (774)
.|..|
T Consensus 193 ~F~~R 197 (223)
T 4aez_C 193 QFTHR 197 (223)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77766
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.82 E-value=6.3e-05 Score=64.31 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Q 004093 290 YDYATWNAKSGSIDAAIKVFQRALKALPDSEM-LRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT 368 (774)
Q Consensus 290 ~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~-l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~ 368 (774)
+..+..+...|++++|+..|+++++..|.+.. +|+.++.++...|++++|...|++++...|. ...+|..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~-------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH--------
Confidence 45567777888889999999999998888888 8888888888889999999999998888876 3344422
Q ss_pred cCHHHHHHHHHHHhc
Q 004093 369 EGVEAARKYFLDARK 383 (774)
Q Consensus 369 ~~~~~Ar~if~~al~ 383 (774)
+.+.++...|+++..
T Consensus 75 ~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 75 KMVMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHHHCCTTH
T ss_pred HHHHHHHHHHHHHhc
Confidence 344555555655443
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.80 E-value=0.00017 Score=62.28 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=61.7
Q ss_pred CCCCCHHHHHHHHHHh-ccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004093 18 ADKYNVETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC 90 (774)
Q Consensus 18 ~nP~d~~~W~~l~~~~-~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~ 90 (774)
.+|.+..+|..++..+ ..+++++|...|+++++.+|.. ...|..++..+...|++++|.+.|++++...
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDY----VGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5899999999999854 5679999999999999999999 9999999999999999999999999999763
No 209
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.78 E-value=0.0011 Score=75.09 Aligned_cols=166 Identities=12% Similarity=0.074 Sum_probs=128.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh---------cCHHHHHHHHHHHhcCC-CCCHHHH
Q 004093 323 RYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT---------EGVEAARKYFLDARKSP-NFTYHVY 392 (774)
Q Consensus 323 ~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~---------~~~~~Ar~if~~al~~~-~~~~~~~ 392 (774)
+....+.+.+.|++++|..+|+++....-......|..++..+.+. ++++.|..+|++....+ ..+..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4445677778899999999999998764433456777777766543 34789999999988753 2246677
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCchhHHHHHHHHHHHH
Q 004093 393 VAYALMAFCQDKDPKLAHNVFEAGLKR-FMHEPAYILEYADFLSRLNDDRNIRALFERALSS-LPPEESIEVWKRFTQFE 470 (774)
Q Consensus 393 i~~A~lE~~~~gd~~~A~~ife~al~~-~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~-~p~e~~~~lw~~~~~fE 470 (774)
.......... |+.+.|.++|+...+. ..-+...+...+..+.+.|+.++|..+|++..+. +.+ ....|..++..-
T Consensus 109 n~lI~~~~~~-g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P--d~~ty~~Li~~~ 185 (501)
T 4g26_A 109 TNGARLAVAK-DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP--EEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHH-TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHH
Confidence 7666654554 9999999999998875 2335667788888999999999999999999874 222 356788888888
Q ss_pred HHhCCHHHHHHHHHHHHHHcc
Q 004093 471 QMYGDLDSTLKVEQRRKEALS 491 (774)
Q Consensus 471 ~~~Gd~~~i~kv~~R~~~~~p 491 (774)
.+.|+.+.+.+++++|.+.--
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~ 206 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVR 206 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTS
T ss_pred hhCCCHHHHHHHHHHHHHhCC
Confidence 899999999999999987653
No 210
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.74 E-value=0.00025 Score=58.92 Aligned_cols=77 Identities=10% Similarity=0.022 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004093 357 AHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFL 434 (774)
Q Consensus 357 ~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l 434 (774)
+|..++..+...+++++|...|+++++..+....+|...+.+.... |+++.|.+.|++++...|+++..+..++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3444444444444444444444444443333344444444443332 4555555555555555554444444444333
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.71 E-value=0.0002 Score=61.61 Aligned_cols=71 Identities=15% Similarity=-0.077 Sum_probs=65.7
Q ss_pred cCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 004093 282 LYHYPDIWYDYATWNAKSGS---IDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 282 ~p~~~~iW~~ya~~l~~~g~---~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~ 352 (774)
+|.++++|..|+..+...++ .++|+.++++|++..|++...++.++..+...|++++|...|++++...|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 58899999999999976555 689999999999999999999999999999999999999999999998875
No 212
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.67 E-value=3.6e-05 Score=66.84 Aligned_cols=65 Identities=11% Similarity=-0.052 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC
Q 004093 358 HIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE 423 (774)
Q Consensus 358 ~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~ 423 (774)
|...+..+.+.|++++|...|+++++..+....+|...+.+.... |+++.|.+.|+++++..|++
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL-GEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCc
Confidence 333344444444444444444444433333334444444333332 44444444444444444443
No 213
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.0012 Score=64.40 Aligned_cols=139 Identities=16% Similarity=0.302 Sum_probs=98.5
Q ss_pred ChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHc---CC---HHHHH-HHHHHHHccC-------CC---HHHHHHH
Q 004093 37 PVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAV---NN---DDATK-QLFSRCLLIC-------LQ---VPLWRCY 99 (774)
Q Consensus 37 ~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~---~n---~~~a~-~ifeRaL~~~-------p~---~~lW~~Y 99 (774)
.+++.|..||+.|...-....-+-+.|..||.+-... |. -.... .+++||+... .+ +.+|+.|
T Consensus 7 ~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Y 86 (202)
T 3esl_A 7 QLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWY 86 (202)
T ss_dssp HHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 4678899999988871111112378999999987653 22 22345 8999999853 23 5999999
Q ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHH-hcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCcc
Q 004093 100 IRFIRKVYEKKGTEGQEETRKAFDFMLS-HVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHH 178 (774)
Q Consensus 100 l~~~~~~~~~~~~~~~e~ar~~ye~aL~-~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~~ 178 (774)
++++.. +.....+.+|.+... .||. ....+|..|+.+++. .+++..|..||+++|.---..
T Consensus 87 a~~~~~-------~~~~~p~~if~~L~~~~IG~--~~AlfYe~wA~~lE~---------~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 87 INLFLS-------NNFHESENTFKYMFNKGIGT--KLSLFYEEFSKLLEN---------AQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHST-------TCHHHHHHHHHHHHHHTSST--TBHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHTTCBS
T ss_pred HHhhcc-------cccCCHHHHHHHHHHCCCcH--HHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCcc
Confidence 998521 113356788887765 3454 467899999999764 588999999999999754444
Q ss_pred HHHHHHHHHHHHHHh
Q 004093 179 VEQLWKDYENFENSV 193 (774)
Q Consensus 179 ~e~l~~~y~~fE~~~ 193 (774)
++.|-..|..|+.++
T Consensus 149 ~~rL~~~~~~F~~R~ 163 (202)
T 3esl_A 149 YNRLLRSLSNYEDRL 163 (202)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777888887764
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.54 E-value=9.8e-05 Score=63.06 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=65.1
Q ss_pred chHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPD-IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~-iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
..+.++..|++++...|.+.. +|+.++..+...|++++|++.|++++...|++...+.. +.+.++...|++
T Consensus 15 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~ 86 (99)
T 2kc7_A 15 DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNK 86 (99)
T ss_dssp CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHH
Confidence 456778999999999999999 99999999999999999999999999999999887633 345567777777
Q ss_pred HhcCCC
Q 004093 346 LLTDSV 351 (774)
Q Consensus 346 ~l~~~~ 351 (774)
++...|
T Consensus 87 ~~~~~p 92 (99)
T 2kc7_A 87 DMYNQL 92 (99)
T ss_dssp TTHHHH
T ss_pred HhccCc
Confidence 665544
No 215
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.51 E-value=0.0017 Score=59.81 Aligned_cols=107 Identities=11% Similarity=0.003 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHH
Q 004093 269 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEES----RGAIAAAKKLYE 344 (774)
Q Consensus 269 ~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~----~g~~e~A~~iye 344 (774)
++++..|+++....... .. ++.++...+.+++|.+.|++|... .+...++.++.++.. .+++++|...|+
T Consensus 12 ~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 85 (138)
T 1klx_A 12 KKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYS 85 (138)
T ss_dssp HHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 34445555555443221 11 444444444455555555555544 344444455555544 445555555555
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHhcC
Q 004093 345 SLLTDSVNTTALAHIQFIRFLRR----TEGVEAARKYFLDARKS 384 (774)
Q Consensus 345 k~l~~~~~~~~~~~~~~a~~~~r----~~~~~~Ar~if~~al~~ 384 (774)
++.+.. ...++..++.++.. .+++++|...|++|.+.
T Consensus 86 ~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 86 KACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 555442 23444444444444 44555555555555443
No 216
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.45 E-value=0.0018 Score=59.59 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH----hcCHHHHHH
Q 004093 301 SIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR----TEGVEAARK 376 (774)
Q Consensus 301 ~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r----~~~~~~Ar~ 376 (774)
++++|.+.|+++.+....... ++.++...+.+++|...|+++.+.. ...++..++.++.. .+++++|..
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 345566666666655432222 4555555555555666666665543 24455555555554 455555555
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHH
Q 004093 377 YFLDARKSPNFTYHVYVAYALMAFC---QDKDPKLAHNVFEAGLKR 419 (774)
Q Consensus 377 if~~al~~~~~~~~~~i~~A~lE~~---~~gd~~~A~~ife~al~~ 419 (774)
.|++|.+.. ....+..++.+... ..+|.++|.+.|+++.+.
T Consensus 83 ~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 83 YYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 555555542 24444444444332 024555555555555543
No 217
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.44 E-value=0.001 Score=65.93 Aligned_cols=129 Identities=17% Similarity=0.358 Sum_probs=94.7
Q ss_pred ChhhHHHHHHHHHHhC---CCCCcccHHHHHHHHHHHHHc---C-C-HHHHHHHHHHHHccC-------CC---HHHHHH
Q 004093 37 PVAQAAPIYEQLLSVF---PTAVSFIAKFWKQYVEAYMAV---N-N-DDATKQLFSRCLLIC-------LQ---VPLWRC 98 (774)
Q Consensus 37 ~i~~Ar~~yeral~~~---P~~~~~~~~~W~~y~~~e~~~---~-n-~~~a~~ifeRaL~~~-------p~---~~lW~~ 98 (774)
.+++.|..||..|... .+- -+.|..||.+-+.. | + -.....+++||+..+ .+ +.+|+.
T Consensus 50 ~l~~~r~~fE~~i~~~~~~dDP----L~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~ 125 (223)
T 4aez_C 50 GLQKERMGHERKIETSESLDDP----LQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQ 125 (223)
T ss_dssp HHHHHHHHHHHHHHHGGGSSCT----HHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCC----hHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHH
Confidence 3778899999988752 344 78999999998764 2 2 234678999999864 23 599999
Q ss_pred HHHHHHHHhhccCCccHHHHHHHHHHHHH-hcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCc
Q 004093 99 YIRFIRKVYEKKGTEGQEETRKAFDFMLS-HVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTH 177 (774)
Q Consensus 99 Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~-~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~ 177 (774)
|++++ . ..+.+|.+... .||. ....+|..|+.+++. .+++..|..||+++|.---.
T Consensus 126 Ya~~~---~---------~p~~if~~L~~~~IG~--~~AlfYe~wA~~lE~---------~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 126 YVNYI---D---------EPVELFSFLAHHHIGQ--ESSIFYEEYANYFES---------RGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp HHTTC---S---------CHHHHHHHHHHTTCST--TBHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHTCB
T ss_pred HHHcc---C---------CHHHHHHHHHHCCcch--hHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCc
Confidence 99874 1 24677877665 3453 467899999999764 58999999999999964333
Q ss_pred cHHHHHHHHHHHHHH
Q 004093 178 HVEQLWKDYENFENS 192 (774)
Q Consensus 178 ~~e~l~~~y~~fE~~ 192 (774)
.++.|-..|..|+.+
T Consensus 183 P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 183 PFLRFQQKYQQFTHR 197 (223)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 455666777777654
No 218
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.43 E-value=0.00084 Score=62.71 Aligned_cols=128 Identities=13% Similarity=0.274 Sum_probs=93.6
Q ss_pred hhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHccC-------CC---HHHHHHHHHHHHH
Q 004093 39 AQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAV---NNDDATKQLFSRCLLIC-------LQ---VPLWRCYIRFIRK 105 (774)
Q Consensus 39 ~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~---~n~~~a~~ifeRaL~~~-------p~---~~lW~~Yl~~~~~ 105 (774)
..+|..||..+...-.+ -+-+.|..||.+-+.+ |. .....+++||+... .+ +.+|+.|++++.
T Consensus 7 ~~~~~~fE~~i~~y~gd--DPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~- 82 (152)
T 4a1g_A 7 ENVLQMLEAHMQSYKGN--DPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNS- 82 (152)
T ss_dssp HHHHHHHHHHTTSCCSS--CHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBS-
T ss_pred HHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhcC-
Confidence 45677888888764322 2478999999998764 33 44778999999763 23 489999998742
Q ss_pred HhhccCCccHHHHHHHHHHHHH-hcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCccHHHHHH
Q 004093 106 VYEKKGTEGQEETRKAFDFMLS-HVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWK 184 (774)
Q Consensus 106 ~~~~~~~~~~e~ar~~ye~aL~-~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~~~e~l~~ 184 (774)
..+.+|.+... .||. ....+|..|+.+++. .+++..|..||+++|..--..++.|-.
T Consensus 83 -----------dp~~if~~L~~~~IG~--~~AlfYe~wA~~lE~---------~g~~~~A~~Vy~~Gi~~~A~P~~rL~~ 140 (152)
T 4a1g_A 83 -----------DLHQFFEFLYNHGIGT--LSSPLYIAWAGHLEA---------QGELQHASAVLQRGIQNQAEPREFLQQ 140 (152)
T ss_dssp -----------CHHHHHHHHHTTTTTT--TBHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred -----------CHHHHHHHHHHCCCcH--HHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 25778877665 3443 467899999999764 589999999999999754444567777
Q ss_pred HHHHHHHH
Q 004093 185 DYENFENS 192 (774)
Q Consensus 185 ~y~~fE~~ 192 (774)
.|..|..+
T Consensus 141 ~~~~F~~R 148 (152)
T 4a1g_A 141 QYRLFQTR 148 (152)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 78888765
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.42 E-value=0.0038 Score=67.13 Aligned_cols=150 Identities=12% Similarity=0.061 Sum_probs=74.8
Q ss_pred HHHHhcCCCHHHHHHHHHHH--HHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 004093 277 QCLMYLYHYPDIWYDYATWN--AKSGS---IDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSV 351 (774)
Q Consensus 277 raL~~~p~~~~iW~~ya~~l--~~~g~---~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~ 351 (774)
++....|.+.+.|-.|.+.. ...++ ..+|+.+|++|++..|+....|-..+..+... + ... +
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~---------~--~~~--~ 251 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR---------H--SQH--P 251 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------H--HHS--C
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---------h--ccC--C
Confidence 44455677777777665433 23333 46788899999998888877665433333210 0 000 0
Q ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHH--HhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHH
Q 004093 352 NTTALAHIQFIRFLRRTEGVEAARKYFLD--ARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILE 429 (774)
Q Consensus 352 ~~~~~~~~~~a~~~~r~~~~~~Ar~if~~--al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ 429 (774)
. ... .....+..+.. ++...+....+|..++.+.... |+++.|+..+++++...|+ ...+..
T Consensus 252 ~-~~~-------------~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~-gd~d~A~~~l~rAl~Ln~s-~~a~~l 315 (372)
T 3ly7_A 252 L-DEK-------------QLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK-GKTDESYQAINTGIDLEMS-WLNYVL 315 (372)
T ss_dssp C-CHH-------------HHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCCC-HHHHHH
T ss_pred C-chh-------------hHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhcCCC-HHHHHH
Confidence 0 000 00011111111 1122233455555554443333 5666666666666666543 333344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 430 YADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 430 ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
.+..+...|+.++|...|++|+...|
T Consensus 316 lG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 316 LGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 45555556666666666666666555
No 220
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.40 E-value=0.0005 Score=77.66 Aligned_cols=104 Identities=9% Similarity=-0.034 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhc-----CCCCC---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----c-CCC
Q 004093 357 AHIQFIRFLRRTEGVEAARKYFLDARK-----SPNFT---YHVYVAYALMAFCQDKDPKLAHNVFEAGLKR----F-MHE 423 (774)
Q Consensus 357 ~~~~~a~~~~r~~~~~~Ar~if~~al~-----~~~~~---~~~~i~~A~lE~~~~gd~~~A~~ife~al~~----~-p~~ 423 (774)
++..++..+..+|++++|..++++++. .++.. ...+.++|.+.+.. |++++|..+|+++++. . ++.
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~-G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHA-GHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444455555555555555555555543 12222 33344455554443 6666666666666653 1 233
Q ss_pred HH---HHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHH
Q 004093 424 PA---YILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVW 463 (774)
Q Consensus 424 ~~---l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw 463 (774)
|. +.....+.+..++.+++|..+|.++.+..- +...+|
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~--~~~~~~ 472 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL--NNQPMQ 472 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCc
Confidence 32 233444555566667777777777765321 334556
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.24 E-value=0.0014 Score=56.28 Aligned_cols=77 Identities=12% Similarity=-0.041 Sum_probs=67.4
Q ss_pred CCCCHHHHHHHHHHh-ccC---ChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHH
Q 004093 19 DKYNVETAEILANSA-LHL---PVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVP 94 (774)
Q Consensus 19 nP~d~~~W~~l~~~~-~~~---~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~p~~~ 94 (774)
+|.|.+.|..++..+ ... ..++|+.+++++|..+|++ .+.+..++..+...|++++|...|++.+...|. .
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~----~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN----EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-N 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-T
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C
Confidence 799999999999854 232 3799999999999999999 999999999999999999999999999998877 6
Q ss_pred HHHHHH
Q 004093 95 LWRCYI 100 (774)
Q Consensus 95 lW~~Yl 100 (774)
.|..-+
T Consensus 77 ~~~~~i 82 (93)
T 3bee_A 77 LDRVTI 82 (93)
T ss_dssp CCHHHH
T ss_pred ccHHHH
Confidence 664433
No 222
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.24 E-value=0.00095 Score=75.36 Aligned_cols=123 Identities=7% Similarity=-0.077 Sum_probs=77.0
Q ss_pred HhcCHHHHHHHHHHHhcC-----CCC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----c-CCCHHH---HHHH
Q 004093 367 RTEGVEAARKYFLDARKS-----PNF---TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR----F-MHEPAY---ILEY 430 (774)
Q Consensus 367 r~~~~~~Ar~if~~al~~-----~~~---~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~----~-p~~~~l---~~~y 430 (774)
.+|++++|+.+|+++++. ++. ...++.++|.+... .|++++|..+|++++.. + ++.|.+ +...
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY-LQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 456666666666666542 222 23445556655444 48888888888888864 2 344443 4566
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc----CCch--hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 004093 431 ADFLSRLNDDRNIRALFERALSS----LPPE--ESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEAL 490 (774)
Q Consensus 431 a~~l~~~gd~~~Ar~lfEraL~~----~p~e--~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~ 490 (774)
+..+..+|++++|..+|++|+.. +.++ ....+.....+.+.+.|.+...+.+++|+.++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888888888888888862 2221 234455555555556677777777777777655
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.19 E-value=0.0027 Score=59.44 Aligned_cols=86 Identities=13% Similarity=0.024 Sum_probs=76.1
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhCCHHHHHH
Q 004093 267 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG---SIDAAIKVFQRALKAL-P-DSEMLRYAFAELEESRGAIAAAKK 341 (774)
Q Consensus 267 ~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g---~~e~A~~v~erAl~~~-P-~~~~l~~~~a~l~e~~g~~e~A~~ 341 (774)
..+++...|++.+...+.+.++.++|+..+.++. ++++++.+|+..++.. | ...+.++.+|..+.+.+++++|+.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3455667889998888899999999999999988 5679999999999998 7 557888889999999999999999
Q ss_pred HHHHHhcCCCC
Q 004093 342 LYESLLTDSVN 352 (774)
Q Consensus 342 iyek~l~~~~~ 352 (774)
.++++++..|.
T Consensus 93 y~~~lL~ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHhcCCC
Confidence 99999999997
No 224
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.13 E-value=0.01 Score=63.80 Aligned_cols=72 Identities=6% Similarity=-0.172 Sum_probs=57.8
Q ss_pred HHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc
Q 004093 418 KRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 492 (774)
Q Consensus 418 ~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk 492 (774)
...|.++..+..++-.+...|+++.|...++||+...+ +...|..........|+.+.+...+.++...-|.
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~---s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM---SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 45688888888888777778999999999999999876 2334444444455789999999999999999884
No 225
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=97.10 E-value=0.007 Score=57.27 Aligned_cols=127 Identities=13% Similarity=0.266 Sum_probs=86.1
Q ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHHHHHc---CCH-HHHHHHHHHHHccC-------CC---HHHHHHHHHHHHHHhh
Q 004093 43 PIYEQLLSVFPTAVSFIAKFWKQYVEAYMAV---NND-DATKQLFSRCLLIC-------LQ---VPLWRCYIRFIRKVYE 108 (774)
Q Consensus 43 ~~yeral~~~P~~~~~~~~~W~~y~~~e~~~---~n~-~~a~~ifeRaL~~~-------p~---~~lW~~Yl~~~~~~~~ 108 (774)
..||..+... ...-+-+.|..||.+.+.+ |.- .....+++||+... .+ +.+|+.|++++ .
T Consensus 4 ~~fE~~i~~~--~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~- 77 (164)
T 2wvi_A 4 RAFEYEIRFY--TGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---N- 77 (164)
T ss_dssp HHHHHHCCCC--CSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---S-
T ss_pred HHHHHHHhhc--CCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---C-
Confidence 3455555421 1112467899999887653 222 23466899998764 23 58999999875 2
Q ss_pred ccCCccHHHHHHHHHHHHH-hcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHHHHcccCccHHHHHHHHH
Q 004093 109 KKGTEGQEETRKAFDFMLS-HVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYE 187 (774)
Q Consensus 109 ~~~~~~~e~ar~~ye~aL~-~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqral~~P~~~~e~l~~~y~ 187 (774)
..+.+|.+... .||. ....+|..|+.+++. .+++..|.+||+++|..--..++.|-..|.
T Consensus 78 --------~p~~if~~L~~~~IG~--~~AlfY~~wA~~lE~---------~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~ 138 (164)
T 2wvi_A 78 --------EPLDMYSYLHNQGIGV--SLAQFYISWAEEYEA---------RENFRKADAIFQEGIQQKAEPLERLQSQHR 138 (164)
T ss_dssp --------CHHHHHHHHHHTTSST--TBHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHTTCBSHHHHHHHHH
T ss_pred --------CHHHHHHHHHHCCcch--hhHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 14567776655 3453 467899999999764 588999999999999754445567778888
Q ss_pred HHHHHhh
Q 004093 188 NFENSVS 194 (774)
Q Consensus 188 ~fE~~~~ 194 (774)
.|+.++.
T Consensus 139 ~F~~R~~ 145 (164)
T 2wvi_A 139 QFQARVS 145 (164)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887753
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.42 E-value=0.017 Score=54.00 Aligned_cols=82 Identities=20% Similarity=0.031 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHHhcCHHHHHHHH
Q 004093 303 DAAIKVFQRALKALPDSEMLRYAFAELEESRG---AIAAAKKLYESLLTDS-VNTTALAHIQFIRFLRRTEGVEAARKYF 378 (774)
Q Consensus 303 e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g---~~e~A~~iyek~l~~~-~~~~~~~~~~~a~~~~r~~~~~~Ar~if 378 (774)
..+++.|++.+...+.+....|.|+..+...+ +++++..+++.+++.. |......++.++-.+.+.+++++|++.|
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34555555555555555666666665555544 4445556666555544 2112233333444444444444444444
Q ss_pred HHHhcC
Q 004093 379 LDARKS 384 (774)
Q Consensus 379 ~~al~~ 384 (774)
+++++.
T Consensus 95 ~~lL~i 100 (152)
T 1pc2_A 95 RGLLQT 100 (152)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 444443
No 227
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.22 E-value=0.019 Score=63.70 Aligned_cols=85 Identities=13% Similarity=0.047 Sum_probs=59.3
Q ss_pred cCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHhcC-----CCCC--cHHHHHHHHH
Q 004093 299 SGSIDAAIKVFQRALKA-----LPDSE---MLRYAFAELEESRGAIAAAKKLYESLLTD-----SVNT--TALAHIQFIR 363 (774)
Q Consensus 299 ~g~~e~A~~v~erAl~~-----~P~~~---~l~~~~a~l~e~~g~~e~A~~iyek~l~~-----~~~~--~~~~~~~~a~ 363 (774)
.|++++|..+|++++.. .|++. ..+..++.++..+|++++|..+|++++.. .++. ....+..++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 56788888888888874 34443 34556778888888888888888888753 2221 2345667777
Q ss_pred HHHHhcCHHHHHHHHHHHhc
Q 004093 364 FLRRTEGVEAARKYFLDARK 383 (774)
Q Consensus 364 ~~~r~~~~~~Ar~if~~al~ 383 (774)
.+..+|++++|..+|++|++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777777777764
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.18 E-value=0.042 Score=47.52 Aligned_cols=69 Identities=13% Similarity=0.053 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKAL-------PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT 353 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~-------P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~ 353 (774)
++.-.+.+|..+...+++..|...|+.|++.. +....++..++..+.+.|++++|...|+++++..|..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 45566778888888899999999999998763 2346777888888888888888888888888888763
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.90 E-value=0.077 Score=45.82 Aligned_cols=69 Identities=9% Similarity=-0.095 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHH
Q 004093 358 HIQFIRFLRRTEGVEAARKYFLDARKS-------PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYI 427 (774)
Q Consensus 358 ~~~~a~~~~r~~~~~~Ar~if~~al~~-------~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~ 427 (774)
.+.++..+.+.+++..|...|+.|++. +.....++..++...+.. |+++.|...++++++..|+++...
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~-g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ-GDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCCHHHH
Confidence 344555555556666666666655542 112345555555555554 666666666666666666665554
No 230
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.71 E-value=0.017 Score=63.92 Aligned_cols=84 Identities=14% Similarity=0.030 Sum_probs=68.6
Q ss_pred hchHHHHHHHHHHHHhc-----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYL-----YHYP---DIWYDYATWNAKSGSIDAAIKVFQRALKA-----LPDS---EMLRYAFAEL 329 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~-----p~~~---~iW~~ya~~l~~~g~~e~A~~v~erAl~~-----~P~~---~~l~~~~a~l 329 (774)
+..+.+...|+++|... ++++ ..+.+++..+..+|++++|..+|++++.. -|++ ...+..+|.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 34577889999999852 4454 56778899999999999999999999974 2444 3456789999
Q ss_pred HHHhCCHHHHHHHHHHHhcC
Q 004093 330 EESRGAIAAAKKLYESLLTD 349 (774)
Q Consensus 330 ~e~~g~~e~A~~iyek~l~~ 349 (774)
+..+|++++|..+|++++++
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHH
Confidence 99999999999999999874
No 231
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.34 E-value=0.086 Score=58.26 Aligned_cols=84 Identities=7% Similarity=-0.089 Sum_probs=37.8
Q ss_pred cCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHhcC-----CCCC--cHHHHHHHHH
Q 004093 299 SGSIDAAIKVFQRALKA-----LPDSE---MLRYAFAELEESRGAIAAAKKLYESLLTD-----SVNT--TALAHIQFIR 363 (774)
Q Consensus 299 ~g~~e~A~~v~erAl~~-----~P~~~---~l~~~~a~l~e~~g~~e~A~~iyek~l~~-----~~~~--~~~~~~~~a~ 363 (774)
+|++++|...|++++.. .|++. ..+..++.++..+|++++|..+|++++.. .+.. ....+..++.
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 44555555555555542 12222 22334444555555555555555555432 1111 1223344444
Q ss_pred HHHHhcCHHHHHHHHHHHh
Q 004093 364 FLRRTEGVEAARKYFLDAR 382 (774)
Q Consensus 364 ~~~r~~~~~~Ar~if~~al 382 (774)
.+..+|++++|..+|++|+
T Consensus 380 ~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHH
Confidence 4445555555555555544
No 232
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.98 E-value=0.18 Score=55.69 Aligned_cols=87 Identities=6% Similarity=-0.096 Sum_probs=56.3
Q ss_pred HhCCHHHHHHHHHHHhcCCCC-----C--cHHHHHHHHHHHHHhcCHHHHHHHHHHHhc-----CCCCC---HHHHHHHH
Q 004093 332 SRGAIAAAKKLYESLLTDSVN-----T--TALAHIQFIRFLRRTEGVEAARKYFLDARK-----SPNFT---YHVYVAYA 396 (774)
Q Consensus 332 ~~g~~e~A~~iyek~l~~~~~-----~--~~~~~~~~a~~~~r~~~~~~Ar~if~~al~-----~~~~~---~~~~i~~A 396 (774)
..|++++|...|++++..... . ...++..++..+..+|++++|..++++++. .++.. ...+.++|
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 567888888888888865321 1 234566677777778888888888887774 23332 33455556
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHH
Q 004093 397 LMAFCQDKDPKLAHNVFEAGLKR 419 (774)
Q Consensus 397 ~lE~~~~gd~~~A~~ife~al~~ 419 (774)
.+... .|++++|..+|+++++.
T Consensus 379 ~~~~~-~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 379 KLQLH-QGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHh-cCCHHHHHHHHHHHHHH
Confidence 55444 37777777777777663
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.66 E-value=0.25 Score=44.43 Aligned_cols=84 Identities=12% Similarity=0.015 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhCCHHHHHHHH
Q 004093 269 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSID---AAIKVFQRALKAL-P-DSEMLRYAFAELEESRGAIAAAKKLY 343 (774)
Q Consensus 269 ~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e---~A~~v~erAl~~~-P-~~~~l~~~~a~l~e~~g~~e~A~~iy 343 (774)
..+...|++.+...+.+.+.-+.||..+.++.+.. +++.+++..++.. | ...+..+.+|..+.+.|++++|+...
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34456788888888889999999999999887654 4889999988876 5 45566677788888999999999999
Q ss_pred HHHhcCCCC
Q 004093 344 ESLLTDSVN 352 (774)
Q Consensus 344 ek~l~~~~~ 352 (774)
+.+|+..|.
T Consensus 98 ~~lL~~eP~ 106 (126)
T 1nzn_A 98 RGLLQTEPQ 106 (126)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHhCCC
Confidence 999999996
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.10 E-value=1 Score=40.39 Aligned_cols=84 Identities=14% Similarity=0.091 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHc-C-CCHHHHHHHHHHHHhcCChhHHHH
Q 004093 371 VEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKD---PKLAHNVFEAGLKRF-M-HEPAYILEYADFLSRLNDDRNIRA 445 (774)
Q Consensus 371 ~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd---~~~A~~ife~al~~~-p-~~~~l~~~ya~~l~~~gd~~~Ar~ 445 (774)
+..+++.|.+....+..+..+-.++|....+. ++ ..+++.+++..++.. | ..-+.+...+-.+.++|++++|+.
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S-~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRT-RYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTS-SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444444444442223344444433332221 22 223455555544432 2 122333333444455555555555
Q ss_pred HHHHHHhcCC
Q 004093 446 LFERALSSLP 455 (774)
Q Consensus 446 lfEraL~~~p 455 (774)
+++..|+.-|
T Consensus 96 ~~~~lL~~eP 105 (126)
T 1nzn_A 96 YVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHhCC
Confidence 5555555544
No 235
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=89.81 E-value=2.8 Score=50.66 Aligned_cols=97 Identities=6% Similarity=-0.041 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 004093 288 IWYDYATWNAKSGSIDAAIKVFQRALK----ALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIR 363 (774)
Q Consensus 288 iW~~ya~~l~~~g~~e~A~~v~erAl~----~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~ 363 (774)
.+..++..+.+.|++++|.++|.+..+ .+.-+...|..+..-+.+.|++++|.++|+++....-..+...|..++.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 355667788899999999999976432 3555677788888889999999999999999987654434678888888
Q ss_pred HHHHhcC-HHHHHHHHHHHhcC
Q 004093 364 FLRRTEG-VEAARKYFLDARKS 384 (774)
Q Consensus 364 ~~~r~~~-~~~Ar~if~~al~~ 384 (774)
.+.+.|+ .++|..+|++....
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHc
Confidence 8888887 57888999887753
No 236
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.45 E-value=1.5 Score=41.21 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=50.7
Q ss_pred hchHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCH-------------
Q 004093 266 SSNKRIIFTYEQCLMYLYHY---------PDIWYDYATWNAKSGSIDAAIKVFQRALKA---LPDSE------------- 320 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~---------~~iW~~ya~~l~~~g~~e~A~~v~erAl~~---~P~~~------------- 320 (774)
+.++.|+.+...++....++ .++.+.+|..+...+++..|...|++||.. .++..
T Consensus 34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p 113 (167)
T 3ffl_A 34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTP 113 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------------
T ss_pred hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCc
Confidence 34566667777655543222 246777888999999999999999999764 23222
Q ss_pred ---------HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 321 ---------MLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 321 ---------~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
++.+..+..+...+++++|..+++.+
T Consensus 114 ~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 114 QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 34555555555555555555555543
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.18 E-value=6.5 Score=35.46 Aligned_cols=80 Identities=15% Similarity=0.012 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 004093 272 IFTYEQCLMYLYHYPDIWYDYATWNAKSGS---IDAAIKVFQRALKALPD-SEMLRYAFAELEESRGAIAAAKKLYESLL 347 (774)
Q Consensus 272 ~~~yeraL~~~p~~~~iW~~ya~~l~~~g~---~e~A~~v~erAl~~~P~-~~~l~~~~a~l~e~~g~~e~A~~iyek~l 347 (774)
...|++-+ ...-+++.-++||..+.++.+ ..+++.+++..++..|. ..+.++.+|.-+.+.|++++|+..-+.++
T Consensus 27 ~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 27 RQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34455543 233467899999999988775 45799999999998884 46677778888889999999999999999
Q ss_pred cCCCC
Q 004093 348 TDSVN 352 (774)
Q Consensus 348 ~~~~~ 352 (774)
+..|.
T Consensus 106 ~~eP~ 110 (134)
T 3o48_A 106 EHERN 110 (134)
T ss_dssp TTCTT
T ss_pred hhCCC
Confidence 99997
No 238
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=89.11 E-value=4.9 Score=47.06 Aligned_cols=161 Identities=12% Similarity=0.056 Sum_probs=100.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc
Q 004093 290 YDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE 369 (774)
Q Consensus 290 ~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~ 369 (774)
...+.++.+.|..+.|.++.+ +....+ ++....|+++.|.++.+.+ . ....|..+++.+...+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~~~----~--~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLTDE----S--AEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHTTC----C--CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHHhh----C--cHhHHHHHHHHHHHcC
Confidence 667788888898888876653 223222 2335678999988875432 1 3679999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004093 370 GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFER 449 (774)
Q Consensus 370 ~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEr 449 (774)
+++.|..+|.++-. +.... .+ +...++.+...++-+.+...- + . .....++..+|++++|.++|.+
T Consensus 696 ~~~~A~~~y~~~~d-----~~~l~---~l-~~~~~~~~~~~~~~~~a~~~~-~-~---~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 696 NFKLAIEAFTNAHD-----LESLF---LL-HSSFNNKEGLVTLAKDAETTG-K-F---NLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp CHHHHHHHHHHHTC-----HHHHH---HH-HHHTTCHHHHHHHHHHHHHTT-C-H---HHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHccC-----hhhhH---HH-HHHcCCHHHHHHHHHHHHHcC-c-h---HHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999998743 22211 12 222477776666555444421 1 1 1122234557888888888766
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHcc
Q 004093 450 ALSSLPPEESIEVWKRFTQFEQMYGDLD-STLKVEQRRKEALS 491 (774)
Q Consensus 450 aL~~~p~e~~~~lw~~~~~fE~~~Gd~~-~i~kv~~R~~~~~p 491 (774)
.- -|...+.+-..+|..+ .+..+.++..+.+.
T Consensus 762 ~~----------~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~ 794 (814)
T 3mkq_A 762 SQ----------RFSEAAFLGSTYGLGDNEVNDIVTKWKENLI 794 (814)
T ss_dssp TT----------CHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cC----------ChHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 43 2555555666777543 24555555555543
No 239
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.36 E-value=8.4 Score=45.05 Aligned_cols=76 Identities=14% Similarity=0.064 Sum_probs=50.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHH
Q 004093 296 NAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAAR 375 (774)
Q Consensus 296 l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar 375 (774)
....|++++|.++.+ ..++...|..+|++..+.++++.|..+|.++-.. -....++...++.+...
T Consensus 662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~---------~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDL---------ESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCH---------HHHHHHHHHTTCHHHHH
T ss_pred hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccCh---------hhhHHHHHHcCCHHHHH
Confidence 456788888877743 3467788999999999999999999999876331 11222333356666655
Q ss_pred HHHHHHhcCC
Q 004093 376 KYFLDARKSP 385 (774)
Q Consensus 376 ~if~~al~~~ 385 (774)
++-+.+...+
T Consensus 728 ~~~~~a~~~~ 737 (814)
T 3mkq_A 728 TLAKDAETTG 737 (814)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 5555555443
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=88.31 E-value=14 Score=35.16 Aligned_cols=120 Identities=11% Similarity=0.027 Sum_probs=74.0
Q ss_pred HHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHH
Q 004093 331 ESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAH 410 (774)
Q Consensus 331 e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~ 410 (774)
.+.|+++.|.++-+.+ +....|.++++...++|+++-|..+|.++-.. .. ..+.|...|+.+.-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~-----~~----L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHSF-----DK----LSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH-----HH----HHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH-----HH----HHHHHHHhCCHHHHH
Confidence 4668888888776654 13568888888888888888888888886432 11 112233357877766
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHH
Q 004093 411 NVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTL 480 (774)
Q Consensus 411 ~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~ 480 (774)
++-+.+......+..+. ....+|+++++..+|.+.-. |..-..|-..||..+.+.
T Consensus 81 kla~iA~~~g~~n~af~-----~~l~lGdv~~~i~lL~~~~r----------~~eA~~~A~t~g~~~~a~ 135 (177)
T 3mkq_B 81 KMQNIAQTREDFGSMLL-----NTFYNNSTKERSSIFAEGGS----------LPLAYAVAKANGDEAAAS 135 (177)
T ss_dssp HHHHHHHHTTCHHHHHH-----HHHHHTCHHHHHHHHHHTTC----------HHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHCccHHHHHH-----HHHHcCCHHHHHHHHHHCCC----------hHHHHHHHHHcCcHHHHH
Confidence 66666655433333322 23447999999999866422 222233455677654443
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.39 E-value=1.7 Score=39.23 Aligned_cols=85 Identities=12% Similarity=0.073 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 004093 370 GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ--DKDPKLAHNVFEAGLKRFMHE-PAYILEYADFLSRLNDDRNIRAL 446 (774)
Q Consensus 370 ~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~--~gd~~~A~~ife~al~~~p~~-~~l~~~ya~~l~~~gd~~~Ar~l 446 (774)
++...++-|.+=. .+..+..+-.++|....+. ..+..+++.+++..++..|.. -+.+...+--+.++|++++||.+
T Consensus 22 eL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y 100 (134)
T 3o48_A 22 QLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY 100 (134)
T ss_dssp HHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3445555565432 2334455555544433332 234567888888888777643 45555555556778888888888
Q ss_pred HHHHHhcCC
Q 004093 447 FERALSSLP 455 (774)
Q Consensus 447 fEraL~~~p 455 (774)
.+++|+.-|
T Consensus 101 ~d~lL~~eP 109 (134)
T 3o48_A 101 VDTLFEHER 109 (134)
T ss_dssp HHHHHTTCT
T ss_pred HHHHHhhCC
Confidence 888888777
No 242
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.21 E-value=18 Score=38.98 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHh
Q 004093 358 HIQFIRFLRRTEGVEAARKYFLDAR 382 (774)
Q Consensus 358 ~~~~a~~~~r~~~~~~Ar~if~~al 382 (774)
+..-++++...+++.+++..+.+|.
T Consensus 142 ~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 142 QLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333444445555555555555554
No 243
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=86.70 E-value=20 Score=33.90 Aligned_cols=108 Identities=17% Similarity=0.217 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 004093 284 HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIR 363 (774)
Q Consensus 284 ~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~ 363 (774)
.+++.-+.++ .+.|+++.|.++.+.. ++...|-.+++.-...|+++-|..+|.++-.. ..+ .-
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~-----~~L----~~ 68 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF-----DKL----SF 68 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH-----HHH----HH
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH-----HHH----HH
Confidence 3445555544 5678888888776654 56778888888888888888888888775331 222 22
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 004093 364 FLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFE 414 (774)
Q Consensus 364 ~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife 414 (774)
++...|+.+...++-+.|...+.. -..+.. +. . .|+++.+.++|.
T Consensus 69 Ly~~tg~~e~L~kla~iA~~~g~~-n~af~~-~l---~-lGdv~~~i~lL~ 113 (177)
T 3mkq_B 69 LYLVTGDVNKLSKMQNIAQTREDF-GSMLLN-TF---Y-NNSTKERSSIFA 113 (177)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTCH-HHHHHH-HH---H-HTCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHCccH-HHHHHH-HH---H-cCCHHHHHHHHH
Confidence 333467777777766666555432 111221 11 1 377777777663
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.56 E-value=2.6 Score=38.57 Aligned_cols=85 Identities=12% Similarity=0.067 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHhcCChhHHHHH
Q 004093 370 GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ--DKDPKLAHNVFEAGLKRFMHEP-AYILEYADFLSRLNDDRNIRAL 446 (774)
Q Consensus 370 ~~~~Ar~if~~al~~~~~~~~~~i~~A~lE~~~--~gd~~~A~~ife~al~~~p~~~-~l~~~ya~~l~~~gd~~~Ar~l 446 (774)
++...++-|.+-.. +..+..+-.++|....+. ..+..+++.+++..++..|... +.+...+--+.++|++++||.+
T Consensus 21 eL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y 99 (144)
T 1y8m_A 21 QLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY 99 (144)
T ss_dssp HHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHH
Confidence 34455555554322 233455555554433332 2345677778888887766543 4444444456677888888888
Q ss_pred HHHHHhcCC
Q 004093 447 FERALSSLP 455 (774)
Q Consensus 447 fEraL~~~p 455 (774)
.+..|+.-|
T Consensus 100 ~d~lL~~eP 108 (144)
T 1y8m_A 100 VDTLFEHER 108 (144)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHhcCC
Confidence 888888766
No 245
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.29 E-value=8.8 Score=38.98 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=53.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 004093 296 NAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 352 (774)
Q Consensus 296 l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~ 352 (774)
+.+.|++++|++..+..|+..|.+..+...+.+++.-.|++++|.+-++.+.+.+|.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 457789999999999999999999999999999999999999999999999999886
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.36 E-value=13 Score=34.01 Aligned_cols=81 Identities=15% Similarity=0.025 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 271 IIFTYEQCLMYLYHYPDIWYDYATWNAKSGS---IDAAIKVFQRALKALPD-SEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 271 ~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~---~e~A~~v~erAl~~~P~-~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
....|++-+. ..-+.+.-|+||..+.++.+ ..+++.+++..++..|. ..+..+.+|.-+.+.|++++|+..-+.+
T Consensus 25 lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l 103 (144)
T 1y8m_A 25 LRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 103 (144)
T ss_dssp HHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3344544322 25678999999999998875 45789999999998884 4555566777778999999999999999
Q ss_pred hcCCCC
Q 004093 347 LTDSVN 352 (774)
Q Consensus 347 l~~~~~ 352 (774)
|+..|.
T Consensus 104 L~~eP~ 109 (144)
T 1y8m_A 104 FEHERN 109 (144)
T ss_dssp HHTCCC
T ss_pred HhcCCC
Confidence 999997
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.13 E-value=4 Score=47.90 Aligned_cols=55 Identities=13% Similarity=0.058 Sum_probs=46.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 004093 396 ALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 396 A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p 455 (774)
|.+... .|+++-|.++-++++...|.+..-|...+..++.+|++++|.-. |..+|
T Consensus 344 a~FLl~-K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLt----LNScP 398 (754)
T 4gns_B 344 TNFLLN-RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFA----INSMP 398 (754)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHH----HHHSC
T ss_pred HHHHhc-cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHH----HhcCC
Confidence 444444 48999999999999999999999999999999999999999844 55666
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.30 E-value=2.2 Score=50.11 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 346 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~ 346 (774)
.+...=+.|+.+.|+++-|+++-++|+...|.+..-|+.+++.|...|+++.|.-.++.+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344445889999999999999999999999999999999999999999999998777766
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.70 E-value=19 Score=38.72 Aligned_cols=166 Identities=8% Similarity=-0.008 Sum_probs=103.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHH--HHHHHHHHHH-hCCHHHHHHHHHHHhcCCC---CCc--HHH
Q 004093 289 WYDYATWNAKSGSIDAAIKVFQRALKA---LPDSEML--RYAFAELEES-RGAIAAAKKLYESLLTDSV---NTT--ALA 357 (774)
Q Consensus 289 W~~ya~~l~~~g~~e~A~~v~erAl~~---~P~~~~l--~~~~a~l~e~-~g~~e~A~~iyek~l~~~~---~~~--~~~ 357 (774)
-+.++.++.+.|+.++..+++...... .|+.... --.+.+.... -+..+.-.++...+++... ... ..+
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888899999988888887766443 3333211 1122222221 2344444445555553211 101 113
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcC----CCC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc---CCCHH---
Q 004093 358 HIQFIRFLRRTEGVEAARKYFLDARKS----PNF--TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF---MHEPA--- 425 (774)
Q Consensus 358 ~~~~a~~~~r~~~~~~Ar~if~~al~~----~~~--~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~---p~~~~--- 425 (774)
-..++.++...|++.+|.+++.+.++. ... ..++++.-..+... .++..+++.+|..+.+.. +.+|.
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~-~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA-LSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 347889999999999999999988762 111 24555555555445 499999999999998742 23343
Q ss_pred -HHHHHHHHHH-hcCChhHHHHHHHHHHhcCC
Q 004093 426 -YILEYADFLS-RLNDDRNIRALFERALSSLP 455 (774)
Q Consensus 426 -l~~~ya~~l~-~~gd~~~Ar~lfEraL~~~p 455 (774)
+-..-+-++. ..+++..|...|=.++..+.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 3345556777 79999999999988876443
No 250
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=82.49 E-value=11 Score=45.65 Aligned_cols=97 Identities=9% Similarity=-0.077 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhc-----CCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC-CCCHHHHH
Q 004093 320 EMLRYAFAELEESRGAIAAAKKLYESLLT-----DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP-NFTYHVYV 393 (774)
Q Consensus 320 ~~l~~~~a~l~e~~g~~e~A~~iyek~l~-----~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~-~~~~~~~i 393 (774)
...+..+.+.+.+.|++++|..+|+.+-+ ..|+ ...|..++.-+.+.|++++|.++|++....+ ..+.-+|.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd--vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT--LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC--HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 34466788889999999999999977543 2443 6789999999999999999999999998754 22456666
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHH
Q 004093 394 AYALMAFCQDKD-PKLAHNVFEAGLKR 419 (774)
Q Consensus 394 ~~A~lE~~~~gd-~~~A~~ife~al~~ 419 (774)
.......+. |. .+.|.++|+.....
T Consensus 205 tLI~glcK~-G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 205 AALQCMGRQ-DQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHc
Confidence 554433333 55 57899999998886
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.73 E-value=14 Score=34.63 Aligned_cols=59 Identities=17% Similarity=-0.017 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh---CCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q 004093 291 DYATWNAKSGSIDAAIKVFQRALKA---LPDS------EMLRYAFAELEESRGAIAAAKKLYESLLTD 349 (774)
Q Consensus 291 ~ya~~l~~~g~~e~A~~v~erAl~~---~P~~------~~l~~~~a~l~e~~g~~e~A~~iyek~l~~ 349 (774)
+-++-+...+.++.|+-+...++.. +|+. ..+.+.+|+.+...++|.+|...|+++|+.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3345566778888888887776653 3432 234567888889999999999999998754
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=74.93 E-value=12 Score=40.10 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=46.8
Q ss_pred ccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004093 34 LHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLL 88 (774)
Q Consensus 34 ~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~ 88 (774)
..+...++...+++++..+|.. ..+|..++..+...|+..+|.+.|+++-.
T Consensus 183 ~~g~~~~a~~~l~~~~~~~P~~----E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 183 ACGRASAVIAELEALTFEHPYR----EPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4467899999999999999999 99999999999999999999999998754
No 253
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.35 E-value=57 Score=36.29 Aligned_cols=193 Identities=11% Similarity=0.109 Sum_probs=81.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH--h---------CCCCHHHHHHHHHHHHHhCCHHH----------HHHH----HHHHh
Q 004093 293 ATWNAKSGSIDAAIKVFQRALK--A---------LPDSEMLRYAFAELEESRGAIAA----------AKKL----YESLL 347 (774)
Q Consensus 293 a~~l~~~g~~e~A~~v~erAl~--~---------~P~~~~l~~~~a~l~e~~g~~e~----------A~~i----yek~l 347 (774)
..++..++++++|.++-...+. . .+-...+||.|..+++..|+... .+.. +..+.
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 3455566777776665554431 1 23345678888888888776543 2322 23322
Q ss_pred -cCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC--C----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Q 004093 348 -TDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF--T----YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF 420 (774)
Q Consensus 348 -~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~--~----~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~ 420 (774)
.++....+.++..+.+.+...+.++.|.++..++. .|.. + ...+...+.+... .+++..|.+.+..|+...
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~-q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAI-QLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTSSC
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhC
Confidence 23333345688888899999999999999999885 3221 1 1111122333333 589999999999999887
Q ss_pred CCCH---HHH---HHH-HHHHHhcCChhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc
Q 004093 421 MHEP---AYI---LEY-ADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRT 493 (774)
Q Consensus 421 p~~~---~l~---~~y-a~~l~~~gd~~~Ar~lfEraL~~~p~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk~ 493 (774)
|.+. .+. +.| +-..+-.|+.-. |.+|.+ ..-+....-|....+.- +.||+..+..+.++....|-++
T Consensus 301 p~~~~a~gfr~~a~K~lI~V~LLlG~iP~-r~lf~q----~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~~~F~~D 374 (523)
T 4b4t_S 301 PHNSKSLGFLQQSNKLHCCIQLLMGDIPE-LSFFHQ----SNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYKQLLLKD 374 (523)
T ss_dssp SCSSSCSHHHHHHHHHHHHHHHHHTCCCC-HHHHTT----TSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHHHHHHT
T ss_pred CcchhhhhHHHHHHHHHHhHHhhcCCCCC-hHHhhc----hhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhcceeccC
Confidence 6431 222 222 222222465432 333332 11011112222222222 5799999998888888888743
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=70.54 E-value=12 Score=40.24 Aligned_cols=58 Identities=19% Similarity=0.076 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 004093 325 AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARK 383 (774)
Q Consensus 325 ~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~ 383 (774)
.+++.+...|+++++.....+++..+|- ...+|..+|..+.+.|+..+|...|.++.+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566677777777777777777765 356777777777777888888888777764
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.81 E-value=19 Score=39.29 Aligned_cols=100 Identities=11% Similarity=0.063 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC--CCCCHHH----H
Q 004093 321 MLRYAFAELEESRGAIAAAKKLYESLLTDSVN--TTALAHIQFIRFLRRTEGVEAARKYFLDARKS--PNFTYHV----Y 392 (774)
Q Consensus 321 ~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~--~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~--~~~~~~~----~ 392 (774)
..+..+|+++...|++++|.++|.++...... ....++...++.....+++..+...+.++... ....+.. .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 45678899999999999999999888764322 23467888888888899999999999988642 2222222 2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Q 004093 393 VAYALMAFCQDKDPKLAHNVFEAGLKRFM 421 (774)
Q Consensus 393 i~~A~lE~~~~gd~~~A~~ife~al~~~p 421 (774)
...+.+... .+++..|.+.|-.++..+.
T Consensus 212 ~~~gl~~l~-~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLA-VRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGG-TSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHH-hChHHHHHHHHHHHhccCC
Confidence 222333333 4888888888877777654
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.11 E-value=10 Score=41.30 Aligned_cols=100 Identities=14% Similarity=0.097 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC---CCCCcH--H
Q 004093 285 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPD---SEMLRYAFAELEESRGAIAAAKKLYESLLTD---SVNTTA--L 356 (774)
Q Consensus 285 ~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~---~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~---~~~~~~--~ 356 (774)
...++..+|.++.+.|++++|.++|.++...+.. ...+++....+....+++..+...++++-.. .++... .
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 3457889999999999999999999999987643 3567778888888899999999999987643 222111 2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 004093 357 AHIQFIRFLRRTEGVEAARKYFLDARKS 384 (774)
Q Consensus 357 ~~~~~a~~~~r~~~~~~Ar~if~~al~~ 384 (774)
+....+.+....+++..|-..|-.+...
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 3334444555678899998888887654
No 257
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.83 E-value=1.7e+02 Score=31.76 Aligned_cols=168 Identities=8% Similarity=0.021 Sum_probs=103.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHhCCHHHHHHHHHHHhcCCC----C--
Q 004093 283 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYA----FAELEESRGAIAAAKKLYESLLTDSV----N-- 352 (774)
Q Consensus 283 p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~----~a~l~e~~g~~e~A~~iyek~l~~~~----~-- 352 (774)
+....+-...+.++...++++...+.+.-..+........-.. ...+.....+.+. .....++.... .
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~ki 130 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKI 130 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCC
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccch
Confidence 3457778888889999999988777665444333322221111 1122222232221 12222222110 0
Q ss_pred ----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---
Q 004093 353 ----TTALAHIQFIRFLRRTEGVEAARKYFLDARKSP--NF----TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR--- 419 (774)
Q Consensus 353 ----~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~--~~----~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~--- 419 (774)
....+...++.++...|++.+|.+++....... .. ...+++.-..+.... +|+.+|..++.++...
T Consensus 131 flE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~-~d~~~a~~~~~ki~~~~~~ 209 (445)
T 4b4t_P 131 FVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILK-GDYSQATVLSRKILKKTFK 209 (445)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhcc
Confidence 024566788999999999999999999876421 11 245566555655554 8999999999987542
Q ss_pred cCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 004093 420 FMHEPA----YILEYADFLSRLNDDRNIRALFERALSS 453 (774)
Q Consensus 420 ~p~~~~----l~~~ya~~l~~~gd~~~Ar~lfEraL~~ 453 (774)
.+..+. +....+.++...+++.+|-..|-.++..
T Consensus 210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 334444 4456677777889999998888888763
No 258
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=54.84 E-value=79 Score=28.73 Aligned_cols=82 Identities=13% Similarity=-0.048 Sum_probs=60.2
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 345 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek 345 (774)
+..+|+..+|- ....+.+..-.....+-..|.-++--+++...+...+-++.+.+..|..+.+.|+..++.+++.+
T Consensus 75 ~NlKrVi~C~~----~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 75 QNLKSVVECGV----INNTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp SCTHHHHHHHH----HTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcHHHHHHHHH----HhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 45677766663 23344455556667777888888888888887777777888888899999999998888888888
Q ss_pred HhcCCC
Q 004093 346 LLTDSV 351 (774)
Q Consensus 346 ~l~~~~ 351 (774)
+.+..-
T Consensus 151 AC~kG~ 156 (172)
T 1wy6_A 151 ACKKGE 156 (172)
T ss_dssp HHHTTC
T ss_pred HHHhhh
Confidence 887653
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=53.88 E-value=3.6e+02 Score=33.07 Aligned_cols=99 Identities=13% Similarity=0.008 Sum_probs=58.4
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C----------------------CHHHHHHHHHHHHHhCCHH
Q 004093 281 YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP-D----------------------SEMLRYAFAELEESRGAIA 337 (774)
Q Consensus 281 ~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P-~----------------------~~~l~~~~a~l~e~~g~~e 337 (774)
.++.++-.-|..|..+...|++++|...|++|-...- . -...++..+.+.++.+.++
T Consensus 837 ~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~ 916 (1139)
T 4fhn_B 837 WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYI 916 (1139)
T ss_dssp HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCH
T ss_pred hccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHH
Confidence 3455655556667777778888888888877632110 0 0123344455666677777
Q ss_pred HHHHHHHHHhcCCCCCc----HHHHHHHHHHHHHhcCHHHHHHHHH
Q 004093 338 AAKKLYESLLTDSVNTT----ALAHIQFIRFLRRTEGVEAARKYFL 379 (774)
Q Consensus 338 ~A~~iyek~l~~~~~~~----~~~~~~~a~~~~r~~~~~~Ar~if~ 379 (774)
.+.+.-..+++...... ..+|....+.....++++.|-..+.
T Consensus 917 ~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 917 DALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 77777666665433211 2366666666777777776655543
No 260
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.72 E-value=90 Score=33.95 Aligned_cols=97 Identities=12% Similarity=0.086 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhc----CCCCC--c
Q 004093 287 DIWYDYATWNAKSGSIDAAIKVFQRALKALP--DS----EMLRYAFAELEESRGAIAAAKKLYESLLT----DSVNT--T 354 (774)
Q Consensus 287 ~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P--~~----~~l~~~~a~l~e~~g~~e~A~~iyek~l~----~~~~~--~ 354 (774)
.+...++.+++..|++.+|.+++.....-.- .+ ..+++.-..++...+++.+|..++.++.. ..+.. .
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 3456788899999999999999988764321 11 33455556677778899999888887642 22211 1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 004093 355 ALAHIQFIRFLRRTEGVEAARKYFLDARK 383 (774)
Q Consensus 355 ~~~~~~~a~~~~r~~~~~~Ar~if~~al~ 383 (774)
...+...+.++...+++..|-+.|..+..
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 12445556666677788887777776654
No 261
>3tj3_C Nuclear pore complex protein NUP50; armadillo repeat, nuclear import adaptor, NLS-bearing protei nucleo-cytoplasmic shuttling, protein transport; 2.70A {Homo sapiens}
Probab=51.17 E-value=4.1 Score=35.19 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=15.7
Q ss_pred CCCchhHHHHHHHHhhhcc
Q 004093 733 QPQPRDFFRIRQMKKARGA 751 (774)
Q Consensus 733 ~~~~~d~~~~r~~~~~~~~ 751 (774)
.-...||.+.|.++++|..
T Consensus 33 ~~AS~eVLs~RkIkkaKRr 51 (114)
T 3tj3_C 33 SMASEEVLKNRAIKKAKRR 51 (114)
T ss_dssp CBCCHHHHHHSCCCCCCCC
T ss_pred ccCCHHHHhcccccccccc
Confidence 4556999999999999854
No 262
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.32 E-value=1.3e+02 Score=33.50 Aligned_cols=149 Identities=11% Similarity=0.061 Sum_probs=61.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHhc------CCCC----CcHHHHHHHHHHHHHhcCHHH----------HHHHHHHHhcC--
Q 004093 327 AELEESRGAIAAAKKLYESLLT------DSVN----TTALAHIQFIRFLRRTEGVEA----------ARKYFLDARKS-- 384 (774)
Q Consensus 327 a~l~e~~g~~e~A~~iyek~l~------~~~~----~~~~~~~~~a~~~~r~~~~~~----------Ar~if~~al~~-- 384 (774)
..++...+++++|.++-..++. .+.. -.+.+|+.|..++...+.... .|..+-.++..
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 3344556777777665544431 1111 135688888888777665543 45454444331
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 004093 385 ---PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE-------PAYILEYADFLSRLNDDRNIRALFERALSSL 454 (774)
Q Consensus 385 ---~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~-------~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~ 454 (774)
...+-.+.++...--|-..+.++.|.++..+.. +|.+ ..|....+.+..-++++.+|...+..|+.+.
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 112223333322212222478899999888774 6642 2344455667777899999999999999988
Q ss_pred Cchh-----HHHHHHHHHHHHHHhCCHH
Q 004093 455 PPEE-----SIEVWKRFTQFEQMYGDLD 477 (774)
Q Consensus 455 p~e~-----~~~lw~~~~~fE~~~Gd~~ 477 (774)
|... ...+...++-.+.-.|+..
T Consensus 301 p~~~~a~gfr~~a~K~lI~V~LLlG~iP 328 (523)
T 4b4t_S 301 PHNSKSLGFLQQSNKLHCCIQLLMGDIP 328 (523)
T ss_dssp SCSSSCSHHHHHHHHHHHHHHHHHTCCC
T ss_pred CcchhhhhHHHHHHHHHHhHHhhcCCCC
Confidence 7432 3456666666666677754
No 263
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=37.46 E-value=1.3e+02 Score=27.91 Aligned_cols=54 Identities=9% Similarity=0.020 Sum_probs=32.8
Q ss_pred HHHhCCHHHHHHHHHHHhcCCCCC--cHHHHHHHHH------HHHHhcCHHHHHHHHHHHhc
Q 004093 330 EESRGAIAAAKKLYESLLTDSVNT--TALAHIQFIR------FLRRTEGVEAARKYFLDARK 383 (774)
Q Consensus 330 ~e~~g~~e~A~~iyek~l~~~~~~--~~~~~~~~a~------~~~r~~~~~~Ar~if~~al~ 383 (774)
+.+.|++=+|+++++.+-...+.. ...+|..+++ ...+.||.+.|+.+|.+++.
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345588888888888887765432 2234433333 33456777777777777654
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=37.11 E-value=3.4e+02 Score=27.33 Aligned_cols=58 Identities=7% Similarity=0.036 Sum_probs=51.1
Q ss_pred hchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004093 266 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLR 323 (774)
Q Consensus 266 ~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~ 323 (774)
+....++...+..++..|.+.+....+.+++.-.|+++.|.+-++-+.+.+|.....-
T Consensus 11 g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 11 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 3445667888999999999999999999999999999999999999999999875443
No 265
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=35.97 E-value=1.3e+02 Score=33.17 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q 004093 301 SIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTD 349 (774)
Q Consensus 301 ~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~ 349 (774)
..+.|+..|.+|+..+|.+...+..+|.+....|+.-+|.-.|-+++..
T Consensus 167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 3455666666666666666666666666665555555555555555543
No 266
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=35.11 E-value=2.2e+02 Score=31.39 Aligned_cols=74 Identities=7% Similarity=-0.044 Sum_probs=53.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004093 324 YAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALM 398 (774)
Q Consensus 324 ~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~~i~~A~l 398 (774)
..++++.+-...++.|+..|.+++...|. ....|.+++-+++..++.-.|.-.|-|++........+..+...+
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~-~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 45677777777778888888888888876 457788888888777777777777888877655555665555443
No 267
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=27.99 E-value=1.1e+02 Score=25.31 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 004093 407 KLAHNVFEAGLKRFMHEPAYILEYADFLSR 436 (774)
Q Consensus 407 ~~A~~ife~al~~~p~~~~l~~~ya~~l~~ 436 (774)
+.|+....+.-.++.++++.+..+++.+..
T Consensus 11 ~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~ 40 (89)
T 1g1e_B 11 NHAINYVNKIKNRFQGQPDIYKAFLEILHT 40 (89)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 446665555556676777766666555543
No 268
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=24.04 E-value=4.1e+02 Score=24.14 Aligned_cols=138 Identities=16% Similarity=0.093 Sum_probs=71.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHH
Q 004093 296 NAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAAR 375 (774)
Q Consensus 296 l~~~g~~e~A~~v~erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar 375 (774)
+...|..++..++.++.++..+.+..-|+---.+. . -+=+-..++++..=+.+.-+ ..+++++..
T Consensus 17 ~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD-~-a~C~y~v~vLd~IGkiFDis-------------~C~NlKrVi 81 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLE-S-IDCRYMFQVLDKIGSYFDLD-------------KCQNLKSVV 81 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHH-H-CCHHHHHHHHHHHGGGSCGG-------------GCSCTHHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCCCccccceeeeecch-h-hchhHHHHHHHHHhhhcCcH-------------hhhcHHHHH
Confidence 34568889999999999988887766665322111 1 11122222333322222210 124444444
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 004093 376 KYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSS 453 (774)
Q Consensus 376 ~if~~al~~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~ 453 (774)
..|-+.-.. .-|+..|.-..-..|..+.--+++...+...+-+++++...+..+.+.|+..+|-.+..+|-+.
T Consensus 82 ~C~~~~n~~-----se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 82 ECGVINNTL-----NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHTTCC-----CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhcch-----HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 444333221 1223333211112366666666666655544445777777777777777777777777777654
No 269
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=23.55 E-value=1.6e+02 Score=23.34 Aligned_cols=34 Identities=9% Similarity=0.106 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004093 290 YDYATWNAKSGSIDAAIKVFQRALKALPDSEMLR 323 (774)
Q Consensus 290 ~~ya~~l~~~g~~e~A~~v~erAl~~~P~~~~l~ 323 (774)
...++-+...|+.++|..-|-+|+..||.-..|.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 3567888889999999999999999999876654
No 270
>2l9b_B MRNA 3'-END-processing protein RNA14; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=21.29 E-value=1.2e+02 Score=22.34 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=31.9
Q ss_pred cCCHHHHHHHhhCC---CCCCCCCCHHHHHHHHh-cCCCCCC
Q 004093 630 AASPAIFAFLANLP---AVEGPTPNVDIVLSICL-QSDIPTG 667 (774)
Q Consensus 630 ~~p~~~~~~~~~~p---~~~gp~~~vd~~~~~~~-~~~~~~~ 667 (774)
.+|+.+.-+|+.|| -|.-++.+...+.+.|. |-.||+.
T Consensus 6 ~iP~eI~dLL~vLPKRQYFK~~~ld~~klv~~L~dqV~ip~~ 47 (53)
T 2l9b_B 6 ELPTEVLDLLSVIPKRQYFNTNLLDAQKLVNFLNDQVEIPTV 47 (53)
T ss_dssp CCCHHHHHHHHHSBCGGGGCSSCCCHHHHHHHHHHTCCCC--
T ss_pred CCCHHHHHHHHHcchHhhhcccccCHHHHHHHHHhccccCCc
Confidence 69999999999999 58999999999999985 5677753
No 271
>1un0_C Nucleoporin NUP2; nuclear import, armadillo repeat, NLS release, karyopherin recycling; 2.6A {Saccharomyces cerevisiae} PDB: 2c1t_C
Probab=20.59 E-value=42 Score=24.74 Aligned_cols=22 Identities=5% Similarity=0.141 Sum_probs=18.0
Q ss_pred cCCCchhHHHHHHHHhhhccCC
Q 004093 732 SQPQPRDFFRIRQMKKARGAAS 753 (774)
Q Consensus 732 ~~~~~~d~~~~r~~~~~~~~~~ 753 (774)
......||..-|-++++|...+
T Consensus 28 ~~~AS~eVl~~RkI~k~krr~~ 49 (51)
T 1un0_C 28 TKVASSAVMNRRKIAMPKRRMA 49 (51)
T ss_pred cccCCHHHHhcCcccccccccc
Confidence 3567899999999999997643
No 272
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=20.28 E-value=7e+02 Score=25.45 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhC---CC---CHHHHHHHHHHHHHh
Q 004093 269 KRIIFTYEQCLMYLYHYPDIWYDYATWNA---KSGSIDAAIKVFQRALKAL---PD---SEMLRYAFAELEESR 333 (774)
Q Consensus 269 ~r~~~~yeraL~~~p~~~~iW~~ya~~l~---~~g~~e~A~~v~erAl~~~---P~---~~~l~~~~a~l~e~~ 333 (774)
+|++.-++..+.. .++.++...|-.+.. +.+++++|++++..+.... -. -.+|-..+.+.++..
T Consensus 14 ~r~l~rl~~~I~~-G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~ 86 (312)
T 2wpv_A 14 AKTLQRFENKIKA-GDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLA 86 (312)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc
Confidence 3344444444443 234455554433333 3567777777766665431 11 134444455555554
Done!