Your job contains 1 sequence.
>004094
MLTFYVLPKQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAY
KDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLED
ELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVA
TANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGM
WTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKT
GELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMC
PFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKN
QSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE
ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDG
TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS
AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR
LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSF
NNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004094
(774 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2115909 - symbol:DDB1A "damaged DNA binding pr... 3571 0. 1
TAIR|locus:2127368 - symbol:DDB1B "damaged DNA binding pr... 3461 0. 1
UNIPROTKB|E2R9E3 - symbol:DDB1 "Uncharacterized protein" ... 1225 7.4e-222 2
UNIPROTKB|A1A4K3 - symbol:DDB1 "DNA damage-binding protei... 1223 1.2e-221 2
MGI|MGI:1202384 - symbol:Ddb1 "damage specific DNA bindin... 1223 1.2e-221 2
UNIPROTKB|F1RIE2 - symbol:DDB1 "Uncharacterized protein" ... 1220 2.5e-221 2
UNIPROTKB|Q16531 - symbol:DDB1 "DNA damage-binding protei... 1219 3.2e-221 2
UNIPROTKB|P33194 - symbol:DDB1 "DNA damage-binding protei... 1219 3.2e-221 2
UNIPROTKB|Q5R649 - symbol:DDB1 "DNA damage-binding protei... 1219 1.1e-220 2
UNIPROTKB|Q6P6Z0 - symbol:ddb1 "DNA damage-binding protei... 1218 1.1e-220 2
UNIPROTKB|F1P4I8 - symbol:DDB1 "DNA damage-binding protei... 1214 1.1e-220 2
UNIPROTKB|Q805F9 - symbol:DDB1 "DNA damage-binding protei... 1214 1.1e-220 2
ZFIN|ZDB-GENE-040426-1272 - symbol:ddb1 "damage specific ... 1203 1.4e-220 2
UNIPROTKB|F1NVV2 - symbol:DDB1 "DNA damage-binding protei... 1214 2.0e-219 2
UNIPROTKB|F1NVV3 - symbol:DDB1 "DNA damage-binding protei... 1214 2.9e-218 2
RGD|621889 - symbol:Ddb1 "damage-specific DNA binding pro... 1200 7.7e-218 2
UNIPROTKB|J9NVR7 - symbol:DDB1 "Uncharacterized protein" ... 1225 4.7e-207 2
UNIPROTKB|F5GY55 - symbol:DDB1 "Uncharacterized protein" ... 1219 6.9e-206 2
FB|FBgn0260962 - symbol:pic "piccolo" species:7227 "Droso... 1156 2.3e-194 2
DICTYBASE|DDB_G0286013 - symbol:repE "UV-damaged DNA bind... 835 1.1e-175 3
UNIPROTKB|F1M680 - symbol:Ddb1 "DNA damage-binding protei... 922 6.2e-142 2
WB|WBGene00010890 - symbol:ddb-1 species:6239 "Caenorhabd... 702 9.2e-122 2
UNIPROTKB|Q21554 - symbol:ddb-1 "DNA damage-binding prote... 702 9.2e-122 2
UNIPROTKB|B4DG00 - symbol:DDB1 "cDNA FLJ52436, highly sim... 940 1.8e-94 1
ASPGD|ASPL0000052925 - symbol:ddbA species:162425 "Emeric... 796 5.1e-79 1
UNIPROTKB|F5H6C5 - symbol:DDB1 "DNA damage-binding protei... 760 2.1e-75 1
UNIPROTKB|F5H581 - symbol:DDB1 "DNA damage-binding protei... 686 1.1e-70 2
UNIPROTKB|F5H775 - symbol:DDB1 "DNA damage-binding protei... 661 6.7e-65 1
UNIPROTKB|G4N4E2 - symbol:MGG_16867 "Uncharacterized prot... 471 2.3e-61 2
UNIPROTKB|F5H0Y5 - symbol:DDB1 "DNA damage-binding protei... 626 3.4e-61 1
POMBASE|SPAC17H9.10c - symbol:ddb1 "damaged DNA binding p... 615 9.0e-61 2
DICTYBASE|DDB_G0282569 - symbol:sf3b3 "splicing factor 3B... 326 2.0e-48 2
TAIR|locus:2100616 - symbol:SAP130a "spliceosome-associat... 345 1.6e-47 2
TAIR|locus:2100646 - symbol:SAP130b "spliceosome-associat... 345 1.6e-47 2
UNIPROTKB|E9PT66 - symbol:Sf3b3 "Protein Sf3b3" species:1... 337 4.7e-47 2
UNIPROTKB|E2RR33 - symbol:SF3B3 "Uncharacterized protein"... 337 5.7e-46 3
UNIPROTKB|A0JN52 - symbol:SF3B3 "Splicing factor 3B subun... 337 7.3e-46 3
UNIPROTKB|Q15393 - symbol:SF3B3 "Splicing factor 3B subun... 337 7.3e-46 3
MGI|MGI:1289341 - symbol:Sf3b3 "splicing factor 3b, subun... 337 7.3e-46 3
ASPGD|ASPL0000031473 - symbol:AN5452 species:162425 "Emer... 343 8.0e-46 2
ZFIN|ZDB-GENE-040426-2901 - symbol:sf3b3 "splicing factor... 338 7.8e-45 3
RGD|1311636 - symbol:Sf3b3 "splicing factor 3b, subunit 3... 337 1.4e-44 3
FB|FBgn0035162 - symbol:CG13900 species:7227 "Drosophila ... 282 2.1e-44 3
UNIPROTKB|F1P529 - symbol:SF3B3 "Uncharacterized protein"... 333 2.0e-43 3
UNIPROTKB|F5GZ34 - symbol:DDB1 "DNA damage-binding protei... 455 2.0e-42 1
WB|WBGene00019323 - symbol:teg-4 species:6239 "Caenorhabd... 342 3.1e-42 2
POMBASE|SPAPJ698.03c - symbol:prp12 "U2 snRNP-associated ... 320 1.8e-41 3
GENEDB_PFALCIPARUM|PFL1680w - symbol:PFL1680w "splicing f... 280 1.6e-35 2
UNIPROTKB|Q8I574 - symbol:PFL1680w "Splicing factor 3b, s... 280 1.6e-35 2
TAIR|locus:2081576 - symbol:AT3G11960 species:3702 "Arabi... 222 1.2e-30 3
UNIPROTKB|F8WF81 - symbol:DDB1 "DNA damage-binding protei... 256 6.9e-21 1
FB|FBgn0024698 - symbol:Cpsf160 "Cleavage and polyadenyla... 248 6.8e-20 4
POMBASE|SPCC11E10.08 - symbol:rik1 "silencing protein Rik... 255 1.0e-19 2
UNIPROTKB|Q10570 - symbol:CPSF1 "Cleavage and polyadenyla... 234 5.5e-19 3
CGD|CAL0004426 - symbol:orf19.5391 species:5476 "Candida ... 179 6.3e-19 2
UNIPROTKB|J9P418 - symbol:CPSF1 "Uncharacterized protein"... 229 3.6e-18 3
MGI|MGI:2679722 - symbol:Cpsf1 "cleavage and polyadenylat... 230 4.9e-18 3
ZFIN|ZDB-GENE-040709-2 - symbol:cpsf1 "cleavage and polya... 226 8.4e-18 3
UNIPROTKB|F1PC28 - symbol:CPSF1 "Uncharacterized protein"... 229 8.9e-18 3
WB|WBGene00022301 - symbol:cpsf-1 species:6239 "Caenorhab... 214 2.1e-17 2
UNIPROTKB|Q9N4C2 - symbol:cpsf-1 "Probable cleavage and p... 214 2.1e-17 2
TAIR|locus:2153122 - symbol:CPSF160 "cleavage and polyade... 208 2.2e-17 2
UNIPROTKB|Q10569 - symbol:CPSF1 "Cleavage and polyadenyla... 230 3.2e-17 3
DICTYBASE|DDB_G0281585 - symbol:cpsf1 "cleavage and polya... 228 1.0e-16 3
UNIPROTKB|F1NZF7 - symbol:SF3B3 "Uncharacterized protein"... 234 2.9e-16 1
UNIPROTKB|K7GNU1 - symbol:CPSF1 "Uncharacterized protein"... 229 5.7e-16 2
UNIPROTKB|F1RSN8 - symbol:CPSF1 "Uncharacterized protein"... 229 1.0e-15 3
UNIPROTKB|E1C725 - symbol:DDB1 "DNA damage-binding protei... 188 1.3e-13 1
RGD|1306406 - symbol:Cpsf1 "cleavage and polyadenylation ... 161 1.7e-11 4
UNIPROTKB|F5H198 - symbol:DDB1 "DNA damage-binding protei... 165 3.9e-11 1
SGD|S000004513 - symbol:RSE1 "Protein involved in pre-mRN... 120 1.1e-09 3
UNIPROTKB|F1S419 - symbol:LOC100512659 "Uncharacterized p... 164 4.8e-09 1
ASPGD|ASPL0000050546 - symbol:AN1413 species:162425 "Emer... 168 3.4e-07 2
POMBASE|SPBC1709.08 - symbol:cft1 "cleavage factor one Cf... 140 7.1e-06 3
>TAIR|locus:2115909 [details] [associations]
symbol:DDB1A "damaged DNA binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA;IPI] [GO:0010100
"negative regulation of photomorphogenesis" evidence=IGI;RCA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
formation" evidence=RCA] [GO:0003002 "regionalization"
evidence=RCA] [GO:0006281 "DNA repair" evidence=RCA] [GO:0006486
"protein glycosylation" evidence=RCA] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0009630 "gravitropism"
evidence=RCA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0033043 "regulation of organelle organization" evidence=RCA]
[GO:0045010 "actin nucleation" evidence=RCA] [GO:0048449 "floral
organ formation" evidence=RCA] [GO:0048608 "reproductive structure
development" evidence=RCA] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005829
GO:GO:0005634 GO:GO:0045892 EMBL:CP002687 GenomeReviews:CT486007_GR
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003677 GO:GO:0006281
GO:GO:0016567 GO:GO:0009585 EMBL:AL161503 GO:GO:0080008
GO:GO:0010100 EMBL:AY074257 EMBL:BT001905 EMBL:AK230366
IPI:IPI00548104 PIR:B85068 RefSeq:NP_192451.1 UniGene:At.32663
UniGene:At.47587 ProteinModelPortal:Q9M0V3 DIP:DIP-40455N
IntAct:Q9M0V3 STRING:Q9M0V3 PaxDb:Q9M0V3 PRIDE:Q9M0V3 ProMEX:Q9M0V3
EnsemblPlants:AT4G05420.1 GeneID:825890 KEGG:ath:AT4G05420
GeneFarm:4660 TAIR:At4g05420 eggNOG:NOG247734 HOGENOM:HOG000007241
InParanoid:Q9M0V3 KO:K10610 OMA:CALGDGS PhylomeDB:Q9M0V3
ProtClustDB:CLSN2685347 Genevestigator:Q9M0V3 GermOnline:AT4G05420
Uniprot:Q9M0V3
Length = 1088
Score = 3571 (1262.1 bits), Expect = 0., P = 0.
Identities = 682/765 (89%), Positives = 727/765 (95%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLNL PDAKGSYVEVLERY+NLGPIVDFCVVDLERQGQGQVVTCSGA+KDGSLR+VR
Sbjct: 324 QLVKLNLHPDAKGSYVEVLERYINLGPIVDFCVVDLERQGQGQVVTCSGAFKDGSLRVVR 383
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGINEQASVELQGIKGMWSL+SS D+ FDTFLVVSFISETRILAMNL G
Sbjct: 384 NGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVSFISETRILAMNLEDELEETEIEG 443
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F SQ QTLFCHDA+YNQLVQVTS SVRLVSST+RELR+EW +P G++VNVATANASQVLL
Sbjct: 444 FLSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELRDEWHAPAGFTVNVATANASQVLL 503
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
ATGGGHLVYLEIGDG LTEV+HA LEYE+SCLDINPIG+NP+YSQ+AAVGMWTDISVRIF
Sbjct: 504 ATGGGHLVYLEIGDGKLTEVQHALLEYEVSCLDINPIGDNPNYSQLAAVGMWTDISVRIF 563
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
SLP+L LITKE LGGEIIPRSVLLCAFEGISYLLCALGDGHLLNF ++ TG+L DRKKV
Sbjct: 564 SLPELTLITKEQLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFQMDTTTGQLKDRKKV 623
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
SLGTQPITLRTFSSK+ THVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD
Sbjct: 624 SLGTQPITLRTFSSKSATHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 683
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEM 429
SLAIA+EGELTIGTIDDIQKLHIR+IPLGEH RRICHQEQ+RTF ICSL NQS +EESEM
Sbjct: 684 SLAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQTRTFGICSLGNQSNSEESEM 743
Query: 430 HFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRI 489
HFVRLLDDQTFEF+STYPLD+FEYGCSILSCSF++D NVYYCVGTAYVLPEENEPTKGRI
Sbjct: 744 HFVRLLDDQTFEFMSTYPLDSFEYGCSILSCSFTEDKNVYYCVGTAYVLPEENEPTKGRI 803
Query: 490 LVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECG 549
LVFIVEDG+LQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECG
Sbjct: 804 LVFIVEDGRLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECG 863
Query: 550 HHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI 609
HHGHILALYVQTRGDFIVVGDLMKSISLL+YKHEEGAIEERARDYNANWMSAVEILDDDI
Sbjct: 864 HHGHILALYVQTRGDFIVVGDLMKSISLLLYKHEEGAIEERARDYNANWMSAVEILDDDI 923
Query: 610 YLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQI 669
YLGAENNFNL TV+KNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDS++GQI
Sbjct: 924 YLGAENNFNLLTVKKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSEIGQI 983
Query: 670 PTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDA 729
PTVIFGTVNGVIGVIASLP EQY FLEKLQ++LRKVIKGVGGL+HEQWRSFNNEK+T +A
Sbjct: 984 PTVIFGTVNGVIGVIASLPQEQYTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEA 1043
Query: 730 KNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH 774
+NFLDGDLIESFLDLSR +M++ISK+MNV VEELCKRVEELTRLH
Sbjct: 1044 RNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKRVEELTRLH 1088
>TAIR|locus:2127368 [details] [associations]
symbol:DDB1B "damaged DNA binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0005829 "cytosol" evidence=RCA]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0007062 "sister
chromatid cohesion" evidence=RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0010162 "seed
dormancy process" evidence=RCA] [GO:0010431 "seed maturation"
evidence=RCA] [GO:0010564 "regulation of cell cycle process"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0048366 "leaf development" evidence=RCA]
[GO:0048608 "reproductive structure development" evidence=RCA]
[GO:0048825 "cotyledon development" evidence=RCA] [GO:0051301 "cell
division" evidence=RCA] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR Gene3D:2.130.10.10
SUPFAM:SSF50978 EMBL:AL161554 GO:GO:0003677 GO:GO:0006281
GO:GO:0009793 GO:GO:0016567 GO:GO:0009585 EMBL:AL021960
UniGene:At.32663 eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610
ProtClustDB:CLSN2685347 EMBL:AK220648 EMBL:AK229805 IPI:IPI00536598
PIR:T04941 RefSeq:NP_193842.1 ProteinModelPortal:O49552 SMR:O49552
DIP:DIP-46981N IntAct:O49552 STRING:O49552 PaxDb:O49552
PRIDE:O49552 EnsemblPlants:AT4G21100.1 GeneID:827857
KEGG:ath:AT4G21100 GeneFarm:4661 TAIR:At4g21100 InParanoid:O49552
OMA:DRPAVIY PhylomeDB:O49552 Genevestigator:O49552
GermOnline:AT4G21100 Uniprot:O49552
Length = 1088
Score = 3461 (1223.4 bits), Expect = 0., P = 0.
Identities = 660/765 (86%), Positives = 713/765 (93%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QLIKLNLQPDAKGSYVE+LE+YVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR
Sbjct: 324 QLIKLNLQPDAKGSYVEILEKYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 383
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGINEQASVELQGIKGMWSL+SS D+ FDTFLVVSFISETRILAMN+ G
Sbjct: 384 NGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVSFISETRILAMNIEDELEETEIEG 443
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F S+ QTLFCHDA+YNQLVQVTS SVRLVSST+RELRN+W +P G+SVNVATANASQVLL
Sbjct: 444 FLSEVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELRNKWDAPAGFSVNVATANASQVLL 503
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
ATGGGHLVYLEIGDG LTEVKH LEYE+SCLDINPIG+NP+YSQ+AAVGMWTDISVRIF
Sbjct: 504 ATGGGHLVYLEIGDGTLTEVKHVLLEYEVSCLDINPIGDNPNYSQLAAVGMWTDISVRIF 563
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LPDL LITKE LGGEIIPRSVLLCAFEGISYLLCALGDGHLLNF L+ G+L DRKKV
Sbjct: 564 VLPDLTLITKEELGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFQLDTSCGKLRDRKKV 623
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
SLGT+PITLRTFSSK+ THVFAASDRP VIYS+NKKLLYSNVNLKEVSHMCPFNSAAFPD
Sbjct: 624 SLGTRPITLRTFSSKSATHVFAASDRPAVIYSNNKKLLYSNVNLKEVSHMCPFNSAAFPD 683
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEM 429
SLAIA+EGELTIGTIDDIQKLHIR+IP+GEH RRICHQEQ+RTFAI L+N+ AEESE
Sbjct: 684 SLAIAREGELTIGTIDDIQKLHIRTIPIGEHARRICHQEQTRTFAISCLRNEPSAEESES 743
Query: 430 HFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRI 489
HFVRLLD Q+FEF+S+YPLD FE GCSILSCSF+DD NVYYCVGTAYVLPEENEPTKGRI
Sbjct: 744 HFVRLLDAQSFEFLSSYPLDAFECGCSILSCSFTDDKNVYYCVGTAYVLPEENEPTKGRI 803
Query: 490 LVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECG 549
LVFIVE+G+LQLI EKETKGAVYSLNAFNGKLLA+INQKIQLYKWMLRDDGTRELQSECG
Sbjct: 804 LVFIVEEGRLQLITEKETKGAVYSLNAFNGKLLASINQKIQLYKWMLRDDGTRELQSECG 863
Query: 550 HHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI 609
HHGHILALYVQTRGDFI VGDLMKSISLLIYKHEEGAIEERARDYNANWM+AVEIL+DDI
Sbjct: 864 HHGHILALYVQTRGDFIAVGDLMKSISLLIYKHEEGAIEERARDYNANWMTAVEILNDDI 923
Query: 610 YLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQI 669
YLG +N FN+FTV+KN+EGATDEER R+EVVGEYH+GEFVNRFRHGSLVM+LPDSD+GQI
Sbjct: 924 YLGTDNCFNIFTVKKNNEGATDEERARMEVVGEYHIGEFVNRFRHGSLVMKLPDSDIGQI 983
Query: 670 PTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDA 729
PTVIFGTV+G+IGVIASLP EQY FLEKLQT+LRKVIKGVGGL+HEQWRSFNNEK+T +A
Sbjct: 984 PTVIFGTVSGMIGVIASLPQEQYAFLEKLQTSLRKVIKGVGGLSHEQWRSFNNEKRTAEA 1043
Query: 730 KNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH 774
K +LDGDLIESFLDLSR +M+EISK M+V VEELCKRVEELTRLH
Sbjct: 1044 KGYLDGDLIESFLDLSRGKMEEISKGMDVQVEELCKRVEELTRLH 1088
>UNIPROTKB|E2R9E3 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000075
"cell cycle checkpoint" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
GO:GO:0031465 KO:K10610 OMA:CALGDGS CTD:1642
GeneTree:ENSGT00530000063396 EMBL:AAEX03011677 RefSeq:XP_533275.2
Ensembl:ENSCAFT00000025824 GeneID:476067 KEGG:cfa:476067
NextBio:20851798 Uniprot:E2R9E3
Length = 1140
Score = 1225 (436.3 bits), Expect = 7.4e-222, Sum P(2) = 7.4e-222
Identities = 234/408 (57%), Positives = 303/408 (74%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 332 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 391
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 392 NGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETELMG 450
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P G +++VA+ N+SQV++
Sbjct: 451 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCNSSQVVV 510
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 511 AVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 569
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKKV
Sbjct: 570 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 629
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 630 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 689
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICS 417
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S
Sbjct: 690 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 737
Score = 940 (336.0 bits), Expect = 7.4e-222, Sum P(2) = 7.4e-222
Identities = 193/377 (51%), Positives = 254/377 (67%)
Query: 410 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 469 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 528
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 887
Query: 529 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 588
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 589 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 648
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 1003
Query: 649 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 707
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 708 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN---------- 757
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ +
Sbjct: 1064 SVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKRE 1123
Query: 758 VSVEELCKRVEELTRLH 774
+ ++L K VEELTR+H
Sbjct: 1124 ATADDLIKVVEELTRIH 1140
>UNIPROTKB|A1A4K3 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9913
"Bos taurus" [GO:0080008 "Cul4-RING ubiquitin ligase complex"
evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase complex"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin
ligase complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0000075 "cell cycle checkpoint" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
UniPathway:UPA00143 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
GO:GO:0016055 Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281
GO:GO:0042787 GO:GO:0000075 GO:GO:0031464 GO:GO:0031465
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
EMBL:BC126629 IPI:IPI00713891 RefSeq:NP_001073731.1
UniGene:Bt.62917 STRING:A1A4K3 PRIDE:A1A4K3
Ensembl:ENSBTAT00000028740 GeneID:511951 KEGG:bta:511951 CTD:1642
GeneTree:ENSGT00530000063396 HOVERGEN:HBG005460 InParanoid:A1A4K3
OrthoDB:EOG4KPT91 NextBio:20870176 Uniprot:A1A4K3
Length = 1140
Score = 1223 (435.6 bits), Expect = 1.2e-221, Sum P(2) = 1.2e-221
Identities = 234/408 (57%), Positives = 303/408 (74%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 332 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 391
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 392 NGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETELMG 450
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P G +++VA+ N+SQV++
Sbjct: 451 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCNSSQVVV 510
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 511 AVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGMSPLCAIGLWTDISARIA 569
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKKV
Sbjct: 570 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 629
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 630 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 689
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICS 417
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S
Sbjct: 690 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 737
Score = 940 (336.0 bits), Expect = 1.2e-221, Sum P(2) = 1.2e-221
Identities = 193/377 (51%), Positives = 254/377 (67%)
Query: 410 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 469 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 528
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 887
Query: 529 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 588
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 589 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 648
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 1003
Query: 649 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 707
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 708 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN---------- 757
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ +
Sbjct: 1064 SVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKRE 1123
Query: 758 VSVEELCKRVEELTRLH 774
+ ++L K VEELTR+H
Sbjct: 1124 ATADDLIKVVEELTRIH 1140
>MGI|MGI:1202384 [details] [associations]
symbol:Ddb1 "damage specific DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000075 "cell cycle checkpoint"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IDA] [GO:0031464 "Cul4A-RING ubiquitin ligase complex"
evidence=ISO] [GO:0031465 "Cul4B-RING ubiquitin ligase complex"
evidence=ISO] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0080008 "Cul4-RING ubiquitin ligase
complex" evidence=ISO] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 UniPathway:UPA00143 MGI:MGI:1202384 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003684 GO:GO:0006281 GO:GO:0042787 GO:GO:0000075
GO:GO:0031464 GO:GO:0031465 eggNOG:NOG247734 KO:K10610 OMA:CALGDGS
CTD:1642 GeneTree:ENSGT00530000063396 HOVERGEN:HBG005460
HSSP:Q16531 ChiTaRS:DDB1 EMBL:AB026432 EMBL:AF159853 EMBL:AK146522
EMBL:AK152228 EMBL:AK154303 EMBL:AK155020 EMBL:AK155920
EMBL:AK157491 EMBL:BC002210 EMBL:BC009661 IPI:IPI00316740
PIR:JC7152 RefSeq:NP_056550.1 UniGene:Mm.289915 UniGene:Mm.466856
ProteinModelPortal:Q3U1J4 SMR:Q3U1J4 IntAct:Q3U1J4 STRING:Q3U1J4
PaxDb:Q3U1J4 PRIDE:Q3U1J4 Ensembl:ENSMUST00000025649 GeneID:13194
KEGG:mmu:13194 UCSC:uc008gqm.1 InParanoid:Q3U1J4 NextBio:283320
Bgee:Q3U1J4 CleanEx:MM_DDB1 Genevestigator:Q3U1J4 Uniprot:Q3U1J4
Length = 1140
Score = 1223 (435.6 bits), Expect = 1.2e-221, Sum P(2) = 1.2e-221
Identities = 234/408 (57%), Positives = 302/408 (74%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 332 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 391
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS D LV+SF+ +TR+L +N G
Sbjct: 392 NGIGIHEHASIDLPGIKGLWPLRSDPGRETDDTLVLSFVGQTRVLMLN-GEEVEETELMG 450
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P G +++VA+ N+SQV++
Sbjct: 451 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCNSSQVVV 510
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 511 AVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 569
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKKV
Sbjct: 570 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 629
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 630 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 689
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICS 417
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S
Sbjct: 690 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 737
Score = 940 (336.0 bits), Expect = 1.2e-221, Sum P(2) = 1.2e-221
Identities = 193/377 (51%), Positives = 254/377 (67%)
Query: 410 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 469 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 528
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 887
Query: 529 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 588
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 589 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 648
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 1003
Query: 649 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 707
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGEASTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 708 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN---------- 757
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ +
Sbjct: 1064 SVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKRE 1123
Query: 758 VSVEELCKRVEELTRLH 774
+ ++L K VEELTR+H
Sbjct: 1124 ATADDLIKVVEELTRIH 1140
>UNIPROTKB|F1RIE2 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000075
"cell cycle checkpoint" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
GO:GO:0031465 KO:K10610 OMA:CALGDGS GeneTree:ENSGT00530000063396
EMBL:CU462918 RefSeq:XP_003122699.1 Ensembl:ENSSSCT00000014314
GeneID:100522239 KEGG:ssc:100522239 Uniprot:F1RIE2
Length = 1140
Score = 1220 (434.5 bits), Expect = 2.5e-221, Sum P(2) = 2.5e-221
Identities = 233/408 (57%), Positives = 303/408 (74%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 332 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 391
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 392 NGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETELMG 450
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P G +++VA+ N++QV++
Sbjct: 451 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCNSNQVVV 510
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 511 AVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIS 569
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKKV
Sbjct: 570 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 629
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 630 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 689
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICS 417
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S
Sbjct: 690 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 737
Score = 940 (336.0 bits), Expect = 2.5e-221, Sum P(2) = 2.5e-221
Identities = 193/377 (51%), Positives = 254/377 (67%)
Query: 410 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 469 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 528
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 887
Query: 529 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 588
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 589 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 648
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 1003
Query: 649 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 707
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 708 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN---------- 757
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ +
Sbjct: 1064 SVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKRE 1123
Query: 758 VSVEELCKRVEELTRLH 774
+ ++L K VEELTR+H
Sbjct: 1124 ATADDLIKVVEELTRIH 1140
>UNIPROTKB|Q16531 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0000075 "cell cycle checkpoint" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IDA] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=IDA] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IMP] [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=IDA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0003684 "damaged DNA binding" evidence=TAS]
[GO:0000718 "nucleotide-excision repair, DNA damage removal"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] Reactome:REACT_216 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 EMBL:U32986
GO:GO:0005737 GO:GO:0019048 GO:GO:0005654 GO:GO:0043161
GO:GO:0016055 Gene3D:2.130.10.10 GO:GO:0003684 EMBL:CH471076
GO:GO:0042787 GO:GO:0000075 GO:GO:0000718 EMBL:AP003108
GO:GO:0031464 PDB:2HYE PDB:4A0K PDBsum:2HYE PDBsum:4A0K PDB:4A0L
PDBsum:4A0L GO:GO:0031465 PDB:3I7P PDBsum:3I7P PDB:3I8C PDBsum:3I8C
PDB:3I89 PDBsum:3I89 PDB:3I7O PDBsum:3I7O PDB:3I8E PDBsum:3I8E
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
CTD:1642 HOVERGEN:HBG005460 OrthoDB:EOG4KPT91 EMBL:U18299
EMBL:L40326 EMBL:AJ002955 EMBL:AK312436 EMBL:AY960579 EMBL:BC011686
EMBL:BC050530 EMBL:BC051764 IPI:IPI00293464 PIR:I38908
RefSeq:NP_001914.3 UniGene:Hs.290758 PDB:2B5L PDB:2B5M PDB:2B5N
PDB:3E0C PDB:3EI1 PDB:3EI2 PDB:3EI3 PDB:3EI4 PDB:3I7H PDB:3I7K
PDB:3I7L PDB:3I7N PDB:4A08 PDB:4A09 PDB:4A0A PDB:4A0B PDB:4A11
PDB:4E54 PDB:4E5Z PDBsum:2B5L PDBsum:2B5M PDBsum:2B5N PDBsum:3E0C
PDBsum:3EI1 PDBsum:3EI2 PDBsum:3EI3 PDBsum:3EI4 PDBsum:3I7H
PDBsum:3I7K PDBsum:3I7L PDBsum:3I7N PDBsum:4A08 PDBsum:4A09
PDBsum:4A0A PDBsum:4A0B PDBsum:4A11 PDBsum:4E54 PDBsum:4E5Z
ProteinModelPortal:Q16531 SMR:Q16531 DIP:DIP-430N IntAct:Q16531
MINT:MINT-1134697 STRING:Q16531 PhosphoSite:Q16531 PaxDb:Q16531
PRIDE:Q16531 Ensembl:ENST00000301764 GeneID:1642 KEGG:hsa:1642
UCSC:uc001nrc.4 GeneCards:GC11M061066 H-InvDB:HIX0171380
HGNC:HGNC:2717 HPA:CAB032821 MIM:600045 neXtProt:NX_Q16531
PharmGKB:PA27187 InParanoid:Q16531 ChiTaRS:DDB1
EvolutionaryTrace:Q16531 GenomeRNAi:1642 NextBio:6750
ArrayExpress:Q16531 Bgee:Q16531 CleanEx:HS_DDB1
Genevestigator:Q16531 GermOnline:ENSG00000167986 Uniprot:Q16531
Length = 1140
Score = 1219 (434.2 bits), Expect = 3.2e-221, Sum P(2) = 3.2e-221
Identities = 233/408 (57%), Positives = 302/408 (74%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 332 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 391
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 392 NGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETELMG 450
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P +++VA+ N+SQV++
Sbjct: 451 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVV 510
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 511 AVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 569
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKKV
Sbjct: 570 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 629
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 630 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 689
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICS 417
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S
Sbjct: 690 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 737
Score = 940 (336.0 bits), Expect = 3.2e-221, Sum P(2) = 3.2e-221
Identities = 193/377 (51%), Positives = 254/377 (67%)
Query: 410 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 469 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 528
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 887
Query: 529 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 588
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 589 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 648
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 1003
Query: 649 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 707
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 708 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN---------- 757
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ +
Sbjct: 1064 SVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKRE 1123
Query: 758 VSVEELCKRVEELTRLH 774
+ ++L K VEELTR+H
Sbjct: 1124 ATADDLIKVVEELTRIH 1140
>UNIPROTKB|P33194 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9534
"Chlorocebus aethiops" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING
ubiquitin ligase complex" evidence=ISS] [GO:0031465 "Cul4B-RING
ubiquitin ligase complex" evidence=ISS] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
UniPathway:UPA00143 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281 GO:GO:0016567
GO:GO:0031464 GO:GO:0031465 HOVERGEN:HBG005460 EMBL:L20216
PIR:S38777 PRIDE:P33194 Uniprot:P33194
Length = 1140
Score = 1219 (434.2 bits), Expect = 3.2e-221, Sum P(2) = 3.2e-221
Identities = 233/408 (57%), Positives = 302/408 (74%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 332 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 391
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 392 NGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETELMG 450
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P +++VA+ N+SQV++
Sbjct: 451 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVV 510
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 511 AVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 569
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKKV
Sbjct: 570 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 629
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 630 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 689
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICS 417
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S
Sbjct: 690 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 737
Score = 940 (336.0 bits), Expect = 3.2e-221, Sum P(2) = 3.2e-221
Identities = 193/377 (51%), Positives = 254/377 (67%)
Query: 410 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 469 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 528
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 887
Query: 529 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 588
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 589 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 648
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 1003
Query: 649 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 707
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 708 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN---------- 757
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ +
Sbjct: 1064 SVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKRE 1123
Query: 758 VSVEELCKRVEELTRLH 774
+ ++L K VEELTR+H
Sbjct: 1124 ATADDLIKVVEELTRIH 1140
>UNIPROTKB|Q5R649 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9601
"Pongo abelii" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=ISS] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677
GO:GO:0006281 GO:GO:0016567 GO:GO:0031464 GO:GO:0031465 KO:K10610
CTD:1642 HOVERGEN:HBG005460 HSSP:Q16531 EMBL:CR860647
RefSeq:NP_001126613.1 UniGene:Pab.18111 GeneID:100173610
KEGG:pon:100173610 InParanoid:Q5R649 Uniprot:Q5R649
Length = 1140
Score = 1219 (434.2 bits), Expect = 1.1e-220, Sum P(2) = 1.1e-220
Identities = 233/408 (57%), Positives = 302/408 (74%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 332 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 391
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 392 NGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETELMG 450
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P +++VA+ N+SQV++
Sbjct: 451 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVV 510
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 511 AVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 569
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKKV
Sbjct: 570 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 629
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 630 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 689
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICS 417
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S
Sbjct: 690 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 737
Score = 935 (334.2 bits), Expect = 1.1e-220, Sum P(2) = 1.1e-220
Identities = 192/377 (50%), Positives = 253/377 (67%)
Query: 410 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 469 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 528
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVY + FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYPMVEFNGKLLASINST 887
Query: 529 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 588
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 589 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 648
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 1003
Query: 649 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 707
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 708 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN---------- 757
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ +
Sbjct: 1064 SVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKRE 1123
Query: 758 VSVEELCKRVEELTRLH 774
+ ++L K VEELTR+H
Sbjct: 1124 ATADDLIKVVEELTRIH 1140
>UNIPROTKB|Q6P6Z0 [details] [associations]
symbol:ddb1 "DNA damage-binding protein 1" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=ISS] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677
GO:GO:0006281 GO:GO:0016567 GO:GO:0031464 GO:GO:0031465 KO:K10610
CTD:1642 HOVERGEN:HBG005460 HSSP:Q16531 EMBL:BC061946
RefSeq:NP_001083624.1 UniGene:Xl.23906 PRIDE:Q6P6Z0 GeneID:399026
KEGG:xla:399026 Xenbase:XB-GENE-967911 Uniprot:Q6P6Z0
Length = 1140
Score = 1218 (433.8 bits), Expect = 1.1e-220, Sum P(2) = 1.1e-220
Identities = 236/408 (57%), Positives = 298/408 (73%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KL + + +GSYV V+E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 332 QLVKLTTESNEQGSYVVVMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 391
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LR + D D LV+SF+ +TR+L + G
Sbjct: 392 NGIGIHEHASIDLPGIKGLWPLRVAADRDTDDTLVLSFVGQTRVLTLT-GEEVEETDLAG 450
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P G V+V + N+ QVLL
Sbjct: 451 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQNPQNLVSEWKEPQGRKVSVCSCNSRQVLL 510
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YLEI G L + ++E+E++CLD+ P+G N + S + A+G+WTDIS RI
Sbjct: 511 AVGRV-LYYLEIHPGELRQTSCTEMEHEVACLDVTPLGGNDTLSSLCAIGLWTDISARIL 569
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
SLP L+ KE LGGEIIPRS+L+ +FE YLLCALGDG L F LN TG L+DRKKV
Sbjct: 570 SLPGFQLLHKEMLGGEIIPRSILMTSFESSHYLLCALGDGALFYFSLNTDTGLLSDRKKV 629
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 630 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSEGYPD 689
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICS 417
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S
Sbjct: 690 SLALANNSTLTIGTIDEIQKLHIRTVPLFESPRKICYQEVSQCFGVLS 737
Score = 936 (334.5 bits), Expect = 1.1e-220, Sum P(2) = 1.1e-220
Identities = 191/364 (52%), Positives = 249/364 (68%)
Query: 422 SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEE 481
S EE E+H + ++D TFE + T+ EY S++SC D Y+ VGTA V P+E
Sbjct: 781 SFGEEVEVHNLLIIDQHTFEVLHTHQFLQNEYTLSLVSCKLGKDPTTYFVVGTAMVYPDE 840
Query: 482 NEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGT 541
EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 841 AEPKQGRIVVFQYNDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAE---- 896
Query: 542 RELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSA 601
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMSA
Sbjct: 897 KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSA 956
Query: 602 VEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR- 660
VEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+
Sbjct: 957 VEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQN 1016
Query: 661 LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSF 720
L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRSF
Sbjct: 1017 LGETSPPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDVQNRLNKVIKSVGKIEHSFWRSF 1076
Query: 721 NNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNV----------SVEELCKRVEEL 770
+ E+KT A F+DGDLIESFLD+SR +M E+ + + +V++L K VEEL
Sbjct: 1077 HTERKTEPATGFIDGDLIESFLDISRPKMQEVIANLQIDDGSGMKRETTVDDLIKVVEEL 1136
Query: 771 TRLH 774
TR+H
Sbjct: 1137 TRIH 1140
>UNIPROTKB|F1P4I8 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AADN02017118
EMBL:AADN02017119 IPI:IPI00818299 Ensembl:ENSGALT00000008352
ArrayExpress:F1P4I8 Uniprot:F1P4I8
Length = 1120
Score = 1214 (432.4 bits), Expect = 1.1e-220, Sum P(2) = 1.1e-220
Identities = 232/408 (56%), Positives = 301/408 (73%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 312 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 371
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 372 NGIGIHEHASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLN-GEEVEETELTG 430
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P G +++VA+ N++QV++
Sbjct: 431 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPNGKNISVASCNSNQVVV 490
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YLEI L ++ ++E+E++CLDI P+G+ S + A+G+WTDIS RI
Sbjct: 491 AVGRA-LYYLEIRPQELRQINCTEMEHEVACLDITPLGDTNGMSPLCAIGLWTDISARIL 549
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F L+++TG L+DRKKV
Sbjct: 550 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLSLETGLLSDRKKV 609
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 610 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 669
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICS 417
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S
Sbjct: 670 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 717
Score = 940 (336.0 bits), Expect = 1.1e-220, Sum P(2) = 1.1e-220
Identities = 194/377 (51%), Positives = 254/377 (67%)
Query: 410 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 748 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 807
Query: 469 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 528
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 808 YFIVGTAMVYPEEAEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINST 867
Query: 529 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 588
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 868 VRLYEWTAE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 923
Query: 589 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 648
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG HLGEF
Sbjct: 924 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEF 983
Query: 649 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 707
VN F HGSLVM+ L + +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 984 VNVFCHGSLVMQNLGEKSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1043
Query: 708 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNV--------- 758
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ + +
Sbjct: 1044 SVGKIEHATWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKRE 1103
Query: 759 -SVEELCKRVEELTRLH 774
+V++L K VEELTR+H
Sbjct: 1104 ATVDDLIKIVEELTRIH 1120
>UNIPROTKB|Q805F9 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0080008
"Cul4-RING ubiquitin ligase complex" evidence=ISS] [GO:0031465
"Cul4B-RING ubiquitin ligase complex" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=ISS] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005737 GO:GO:0005654
GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281
GO:GO:0016567 Reactome:REACT_115612 GO:GO:0031464 GO:GO:0031465
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 CTD:1642
HOVERGEN:HBG005460 OrthoDB:EOG4KPT91 HSSP:Q16531 EMBL:AB074298
EMBL:AJ719779 IPI:IPI00597295 RefSeq:NP_989547.1 UniGene:Gga.12977
STRING:Q805F9 PRIDE:Q805F9 GeneID:374050 KEGG:gga:374050
NextBio:20813572 Uniprot:Q805F9
Length = 1140
Score = 1214 (432.4 bits), Expect = 1.1e-220, Sum P(2) = 1.1e-220
Identities = 232/408 (56%), Positives = 301/408 (73%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 332 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 391
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 392 NGIGIHEHASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLN-GEEVEETELTG 450
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P G +++VA+ N++QV++
Sbjct: 451 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPNGKNISVASCNSNQVVV 510
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YLEI L ++ ++E+E++CLDI P+G+ S + A+G+WTDIS RI
Sbjct: 511 AVGRA-LYYLEIRPQELRQINCTEMEHEVACLDITPLGDTNGMSPLCAIGLWTDISARIL 569
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F L+++TG L+DRKKV
Sbjct: 570 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLSLETGLLSDRKKV 629
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 630 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 689
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICS 417
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S
Sbjct: 690 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 737
Score = 940 (336.0 bits), Expect = 1.1e-220, Sum P(2) = 1.1e-220
Identities = 194/377 (51%), Positives = 255/377 (67%)
Query: 410 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 469 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 528
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINST 887
Query: 529 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 588
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTAE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 589 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 648
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEF 1003
Query: 649 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 707
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 708 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNV--------- 758
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ + +
Sbjct: 1064 SVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKRE 1123
Query: 759 -SVEELCKRVEELTRLH 774
+V++L K VEELTR+H
Sbjct: 1124 ATVDDLIKIVEELTRIH 1140
>ZFIN|ZDB-GENE-040426-1272 [details] [associations]
symbol:ddb1 "damage specific DNA binding protein
1" species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 ZFIN:ZDB-GENE-040426-1272
GO:GO:0005634 Gene3D:2.130.10.10 GO:GO:0003676 EMBL:JQ692623
UniGene:Dr.77970 Uniprot:I1XUS8
Length = 1140
Score = 1203 (428.5 bits), Expect = 1.4e-220, Sum P(2) = 1.4e-220
Identities = 233/408 (57%), Positives = 304/408 (74%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV V+E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 332 QLVKLNVDSNDQGSYVGVMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 391
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L ++ G
Sbjct: 392 NGIGIHEHASIDLPGIKGLWPLRSESSRDTDDMLVLSFVGQTRVLMLS-GEEVEETELQG 450
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLV+ S+ L +EWK P G +++VA+ N +QV+L
Sbjct: 451 FVDNQQTFFCGNVAHQQLIQITSVSVRLVTQDSKALVSEWKEPQGRNISVASCNNTQVVL 510
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YL+I G L ++ ++E+E++CLDI P+GE + S I AVG+WTDIS R+
Sbjct: 511 AVGRV-LYYLQILSGELKQISSTEMEHEVACLDITPLGERTADSCICAVGLWTDISARLL 569
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP + KE LGGEIIPRS+L+ FEG YLLCALGDG L F L+++TG L++RKKV
Sbjct: 570 KLPCFTPLHKEMLGGEIIPRSILMTTFEGSHYLLCALGDGALFYFGLDIQTGVLSERKKV 629
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +T++VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 630 TLGTQPTVLRTFRSLSTSNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSEGYPD 689
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICS 417
SLA+A LTIGTID+IQKLHIR++PL E P+RIC+QE S+ F + S
Sbjct: 690 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPKRICYQEVSQCFGVLS 737
Score = 950 (339.5 bits), Expect = 1.4e-220, Sum P(2) = 1.4e-220
Identities = 194/364 (53%), Positives = 250/364 (68%)
Query: 422 SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEE 481
S EE E+H + ++D TFE + + EY S++SC D VY+ VGTA V PEE
Sbjct: 781 SFGEEVEVHSLLVVDQHTFEVLHAHQFLQNEYALSMVSCKLGRDPAVYFIVGTAMVYPEE 840
Query: 482 NEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGT 541
EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 841 AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAE---- 896
Query: 542 RELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSA 601
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG+ EE ARD+N NWMSA
Sbjct: 897 KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGSFEEIARDFNPNWMSA 956
Query: 602 VEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR- 660
VEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLV++
Sbjct: 957 VEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFSHGSLVLQN 1016
Query: 661 LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSF 720
L +S +V+FGTVNG+IG++ SL Y L LQ L KVIK VG + H WRSF
Sbjct: 1017 LGESSTPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSF 1076
Query: 721 NNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNV----------SVEELCKRVEEL 770
+ E+KT A F+DGDLIESFLDL R +M E+ T+ + +V+E+ K VEEL
Sbjct: 1077 HTERKTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEEL 1136
Query: 771 TRLH 774
TR+H
Sbjct: 1137 TRIH 1140
>UNIPROTKB|F1NVV2 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000075 "cell cycle
checkpoint" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
[GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA]
[GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IEA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
GO:GO:0031465 OMA:CALGDGS GeneTree:ENSGT00530000063396
IPI:IPI00597295 EMBL:AADN02017118 EMBL:AADN02017119
Ensembl:ENSGALT00000040605 ArrayExpress:F1NVV2 Uniprot:F1NVV2
Length = 1123
Score = 1214 (432.4 bits), Expect = 2.0e-219, Sum P(2) = 2.0e-219
Identities = 232/408 (56%), Positives = 301/408 (73%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 312 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 371
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 372 NGIGIHEHASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLN-GEEVEETELTG 430
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P G +++VA+ N++QV++
Sbjct: 431 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPNGKNISVASCNSNQVVV 490
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YLEI L ++ ++E+E++CLDI P+G+ S + A+G+WTDIS RI
Sbjct: 491 AVGRA-LYYLEIRPQELRQINCTEMEHEVACLDITPLGDTNGMSPLCAIGLWTDISARIL 549
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F L+++TG L+DRKKV
Sbjct: 550 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLSLETGLLSDRKKV 609
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 610 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 669
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICS 417
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S
Sbjct: 670 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 717
Score = 928 (331.7 bits), Expect = 2.0e-219, Sum P(2) = 2.0e-219
Identities = 194/380 (51%), Positives = 254/380 (66%)
Query: 410 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 748 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 807
Query: 469 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 528
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 808 YFIVGTAMVYPEEAEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINST 867
Query: 529 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 588
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 868 VRLYEWTAE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 923
Query: 589 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 648
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG HLGEF
Sbjct: 924 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEF 983
Query: 649 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 707
VN F HGSLVM+ L + +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 984 VNVFCHGSLVMQNLGEKSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1043
Query: 708 GVGGLNHE---QWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNV------ 758
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ + +
Sbjct: 1044 SVGKIEHSLYATWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGM 1103
Query: 759 ----SVEELCKRVEELTRLH 774
+V++L K VEELTR+H
Sbjct: 1104 KREATVDDLIKIVEELTRIH 1123
>UNIPROTKB|F1NVV3 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AADN02017118
EMBL:AADN02017119 IPI:IPI00821712 Ensembl:ENSGALT00000040604
ArrayExpress:F1NVV3 Uniprot:F1NVV3
Length = 1119
Score = 1214 (432.4 bits), Expect = 2.9e-218, Sum P(2) = 2.9e-218
Identities = 232/408 (56%), Positives = 301/408 (73%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 312 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 371
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 372 NGIGIHEHASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLN-GEEVEETELTG 430
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P G +++VA+ N++QV++
Sbjct: 431 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPNGKNISVASCNSNQVVV 490
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YLEI L ++ ++E+E++CLDI P+G+ S + A+G+WTDIS RI
Sbjct: 491 AVGRA-LYYLEIRPQELRQINCTEMEHEVACLDITPLGDTNGMSPLCAIGLWTDISARIL 549
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F L+++TG L+DRKKV
Sbjct: 550 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLSLETGLLSDRKKV 609
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 610 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 669
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICS 417
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S
Sbjct: 670 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 717
Score = 917 (327.9 bits), Expect = 2.9e-218, Sum P(2) = 2.9e-218
Identities = 192/377 (50%), Positives = 253/377 (67%)
Query: 410 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 748 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 807
Query: 469 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 528
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 808 YFIVGTAMVYPEEAEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINST 867
Query: 529 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 588
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 868 VRLYEWTAE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 923
Query: 589 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 648
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG HLGEF
Sbjct: 924 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEF 983
Query: 649 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 707
VN F HGSLVM+ L + +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 984 VNVFCHGSLVMQNLGEKSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1043
Query: 708 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNV--------- 758
VG + H + SF+ E+KT A F+DGDLIESFLD+SR +M E+ + +
Sbjct: 1044 SVGKIEHSLY-SFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKRE 1102
Query: 759 -SVEELCKRVEELTRLH 774
+V++L K VEELTR+H
Sbjct: 1103 ATVDDLIKIVEELTRIH 1119
>RGD|621889 [details] [associations]
symbol:Ddb1 "damage-specific DNA binding protein 1, 127kDa"
species:10116 "Rattus norvegicus" [GO:0000075 "cell cycle
checkpoint" evidence=IEA;ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IMP]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISO;ISS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA;ISO] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin
ligase complex" evidence=IEA;ISO;ISS] [GO:0031465 "Cul4B-RING
ubiquitin ligase complex" evidence=IEA;ISO;ISS] [GO:0042787
"protein ubiquitination involved in ubiquitin-dependent protein
catabolic process" evidence=IEA;ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process"
evidence=IEA;ISO;ISS] [GO:0080008 "Cul4-RING ubiquitin ligase
complex" evidence=ISO;ISS] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 UniPathway:UPA00143 RGD:621889 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003684 GO:GO:0006281 GO:GO:0042787 GO:GO:0000075
GO:GO:0031464 GO:GO:0031465 eggNOG:NOG247734 HOGENOM:HOG000007241
HOVERGEN:HBG005460 HSSP:Q16531 EMBL:AJ277077 IPI:IPI00324451
UniGene:Rn.8402 IntAct:Q9ESW0 MINT:MINT-4784948 STRING:Q9ESW0
PhosphoSite:Q9ESW0 PRIDE:Q9ESW0 UCSC:RGD:621889 InParanoid:Q9ESW0
ArrayExpress:Q9ESW0 Genevestigator:Q9ESW0 Uniprot:Q9ESW0
Length = 1140
Score = 1200 (427.5 bits), Expect = 7.7e-218, Sum P(2) = 7.7e-218
Identities = 228/410 (55%), Positives = 302/410 (73%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
Q +KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 332 QPVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 391
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 392 NGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETELMG 450
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P +++VA+ N+SQV++
Sbjct: 451 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPRAKNISVASCNSSQVVV 510
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YL+I L ++ H ++E+E++CLD+ P+G++ S + A+G+WTDIS RI
Sbjct: 511 AVGRA-LYYLQIHPQELRQISHTEMEHEVACLDVTPLGDSNGLSPLCAIGLWTDISARIL 569
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKKV
Sbjct: 570 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 629
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 630 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 689
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK 419
SLA+A LTIGT+++IQKLHIR++P+ E PR+IC+QE S+ F + S +
Sbjct: 690 SLALANTSTLTIGTMNEIQKLHIRTVPIYESPRKICYQEVSQCFGVLSTR 739
Score = 927 (331.4 bits), Expect = 7.7e-218, Sum P(2) = 7.7e-218
Identities = 191/377 (50%), Positives = 252/377 (66%)
Query: 410 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSAAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 469 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 528
Y+ VGTA V PEE EP +GRI+VF GKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSGGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 887
Query: 529 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 588
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 589 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 648
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 1003
Query: 649 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 707
VN F HGSLVM+ L ++ +V+ GTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGETSTPTQGSVLLGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 708 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN---------- 757
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ +
Sbjct: 1064 SVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKRE 1123
Query: 758 VSVEELCKRVEELTRLH 774
+ ++L K VEELTR+H
Sbjct: 1124 ATADDLIKVVEELTRIH 1140
>UNIPROTKB|J9NVR7 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AAEX03011677
Ensembl:ENSCAFT00000049486 Uniprot:J9NVR7
Length = 1084
Score = 1225 (436.3 bits), Expect = 4.7e-207, Sum P(2) = 4.7e-207
Identities = 234/408 (57%), Positives = 303/408 (74%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 332 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 391
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 392 NGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETELMG 450
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P G +++VA+ N+SQV++
Sbjct: 451 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCNSSQVVV 510
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 511 AVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 569
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKKV
Sbjct: 570 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 629
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 630 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 689
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICS 417
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S
Sbjct: 690 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 737
Score = 800 (286.7 bits), Expect = 4.7e-207, Sum P(2) = 4.7e-207
Identities = 164/321 (51%), Positives = 216/321 (67%)
Query: 410 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 469 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 528
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 887
Query: 529 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 588
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 589 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 648
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 1003
Query: 649 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 707
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 708 GVGGLNHEQWRSFNNEKKTVD 728
VG + H + S + VD
Sbjct: 1064 SVGKIEHSLYPSQRHVPAQVD 1084
>UNIPROTKB|F5GY55 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 EMBL:AP003108 HGNC:HGNC:2717 ChiTaRS:DDB1
EMBL:AP003037 IPI:IPI00977083 SMR:F5GY55 Ensembl:ENST00000540166
Uniprot:F5GY55
Length = 1092
Score = 1219 (434.2 bits), Expect = 6.9e-206, Sum P(2) = 6.9e-206
Identities = 233/408 (57%), Positives = 302/408 (74%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 332 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 391
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 392 NGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETELMG 450
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P +++VA+ N+SQV++
Sbjct: 451 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVV 510
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 511 AVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 569
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKKV
Sbjct: 570 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 629
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 630 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 689
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICS 417
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S
Sbjct: 690 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 737
Score = 795 (284.9 bits), Expect = 6.9e-206, Sum P(2) = 6.9e-206
Identities = 161/307 (52%), Positives = 211/307 (68%)
Query: 410 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 768 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 827
Query: 469 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 528
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 828 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 887
Query: 529 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 588
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 888 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 943
Query: 589 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 648
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 944 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 1003
Query: 649 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 707
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 1004 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 1063
Query: 708 GVGGLNH 714
VG + H
Sbjct: 1064 SVGKIEH 1070
>FB|FBgn0260962 [details] [associations]
symbol:pic "piccolo" species:7227 "Drosophila melanogaster"
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=ISS;NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0035220 "wing disc development"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0007307 "eggshell
chorion gene amplification" evidence=IDA] [GO:0007095 "mitotic G2
DNA damage checkpoint" evidence=IGI] InterPro:IPR004871
Pfam:PF03178 UniPathway:UPA00143 EMBL:AE014297 GO:GO:0005634
GO:GO:0005737 GO:GO:0007095 GO:GO:0043161 GO:GO:0003677
GO:GO:0006281 GO:GO:0035220 GO:GO:0042787 GO:GO:0007307
eggNOG:NOG247734 KO:K10610 OMA:CALGDGS GeneTree:ENSGT00530000063396
HSSP:Q16531 EMBL:AF132145 RefSeq:NP_650257.1 UniGene:Dm.3215
ProteinModelPortal:Q9XYZ5 SMR:Q9XYZ5 STRING:Q9XYZ5 PaxDb:Q9XYZ5
PRIDE:Q9XYZ5 EnsemblMetazoa:FBtr0082709 GeneID:41611
KEGG:dme:Dmel_CG7769 UCSC:CG7769-RA CTD:41611 FlyBase:FBgn0260962
InParanoid:Q9XYZ5 OrthoDB:EOG4S1RP0 PhylomeDB:Q9XYZ5
GenomeRNAi:41611 NextBio:824642 Bgee:Q9XYZ5 Uniprot:Q9XYZ5
Length = 1140
Score = 1156 (412.0 bits), Expect = 2.3e-194, Sum P(2) = 2.3e-194
Identities = 225/411 (54%), Positives = 296/411 (72%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL++LN + GSYV +E + NL PI+D VVDL+RQGQGQ++TCSG++KDGSLRI+R
Sbjct: 331 QLVRLNSEA-IDGSYVVPVENFTNLAPILDIAVVDLDRQGQGQIITCSGSFKDGSLRIIR 389
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDD-PFDTFLVVSFISETRILAMNLXXXXXXXXXX 128
GIGI E A ++L GIKGMWSL+ D+ P++ LV++F+ TRIL ++
Sbjct: 390 IGIGIQEHACIDLPGIKGMWSLKVGVDESPYENTLVLAFVGHTRILTLS-GEEVEETEIP 448
Query: 129 GFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVL 188
GF S QT C + Y+QL+QVTS SVRLVSS ++ L EW+ ++ V + N +Q+L
Sbjct: 449 GFASDLQTFLCSNVDYDQLIQVTSDSVRLVSSATKALVAEWRPTGDRTIGVVSCNTTQIL 508
Query: 189 LATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRI 248
+A+ + Y+ I DG L E L YE++CLDI P+ E S + AVG+WTDIS I
Sbjct: 509 VASACD-IFYIVIEDGSLREQSRRTLAYEVACLDITPLDETQKKSDLVAVGLWTDISAVI 567
Query: 249 FSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKK 308
SLPDL I E L GEIIPRS+L+ FEGI YLLCALGDG + F+++ TG+LTD+KK
Sbjct: 568 LSLPDLETIYTEKLSGEIIPRSILMTTFEGIHYLLCALGDGSMYYFIMDQTTGQLTDKKK 627
Query: 309 VSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFP 368
V+LGTQP TLRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV+HMC N+ A+P
Sbjct: 628 VTLGTQPTTLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNHMCSLNAQAYP 687
Query: 369 DSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK 419
DSLA+A + + +GTID+IQKLHIR++PLGE PRRI +QE S+TFA+ +L+
Sbjct: 688 DSLALANKNAVILGTIDEIQKLHIRTVPLGEGPRRIAYQESSQTFAVSTLR 738
Score = 749 (268.7 bits), Expect = 2.3e-194, Sum P(2) = 2.3e-194
Identities = 160/369 (43%), Positives = 225/369 (60%)
Query: 420 NQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 479
N +E ++H + ++D TFE + + E S++S DD N YY V T+ V+P
Sbjct: 780 NAEVGQEIDVHNLLVIDQNTFEVLHAHQFVAPETISSLMSAKLGDDPNTYYVVATSLVIP 839
Query: 480 EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDD 539
EE EP GRI++F + KL +AE + G Y+L FNGK+LA I ++LY+W
Sbjct: 840 EEPEPKVGRIIIFHYHENKLTQVAETKVDGTCYALVEFNGKVLAGIGSFVRLYEWT---- 895
Query: 540 GTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWM 599
+EL+ EC I AL+++ +GDFI+VGDLM+SI+LL +K EG E ARD WM
Sbjct: 896 NEKELRMECNIQNMIAALFLKAKGDFILVGDLMRSITLLQHKQMEGIFVEIARDCEPKWM 955
Query: 600 SAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVM 659
AVEILDDD +LG+E N NLF +K+S TDEER L + +HLG+ VN FRHGSLVM
Sbjct: 956 RAVEILDDDTFLGSETNGNLFVCQKDSAATTDEERQLLPELARFHLGDTVNVFRHGSLVM 1015
Query: 660 RLPDSDVGQIPT-----VIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNH 714
+ +VG+ T V++GT NG IG++ +P + Y FL L+ L+K+IK VG + H
Sbjct: 1016 Q----NVGERTTPINGCVLYGTCNGAIGIVTQIPQDFYDFLHGLEERLKKIIKSVGKIEH 1071
Query: 715 EQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDE----ISKTMN-----VSVEELCK 765
+R+F K ++ F+DGDLIESFLDLSR +M + + T+N VE++ K
Sbjct: 1072 TYYRNFQINSKVEPSEGFIDGDLIESFLDLSRDKMRDAVQGLELTLNGERKSADVEDVIK 1131
Query: 766 RVEELTRLH 774
VE+LTR+H
Sbjct: 1132 IVEDLTRMH 1140
>DICTYBASE|DDB_G0286013 [details] [associations]
symbol:repE "UV-damaged DNA binding protein1"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA;ISS;IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA;IEP]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
InterPro:IPR017986 InterPro:IPR004871 Pfam:PF03178
UniPathway:UPA00143 dictyBase:DDB_G0286013 GO:GO:0005634
GO:GO:0005737 GenomeReviews:CM000153_GR SUPFAM:SSF50978
GO:GO:0003684 GO:GO:0016567 EMBL:AAFI02000085 GO:GO:0006289
eggNOG:NOG247734 KO:K10610 OMA:CALGDGS EMBL:U50042 PIR:S71092
RefSeq:XP_637896.2 STRING:B0M0P5 EnsemblProtists:DDB0191144
GeneID:8625406 KEGG:ddi:DDB_G0286013 ProtClustDB:CLSZ2430134
Uniprot:B0M0P5
Length = 1181
Score = 835 (299.0 bits), Expect = 1.1e-175, Sum P(3) = 1.1e-175
Identities = 178/412 (43%), Positives = 257/412 (62%)
Query: 97 DPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCH--DAIYNQLVQVTSGS 154
D D +L+ SFI T++L+ G S TL+C D + N L+Q+T+ S
Sbjct: 471 DSKDRYLITSFIECTKVLSFQ-GEEIEETEFEGLESNCSTLYCGTIDKL-NLLIQITNVS 528
Query: 155 VRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDG--ILTEVKHA 212
+ L+ S + + ++W P +N+ + N Q++L+ L+Y +I + VK
Sbjct: 529 INLIDSNTFKRVSQWNVEPSRRINLVSTNQDQIVLSIDKS-LLYFQINSSNKSIQLVKEI 587
Query: 213 QLEYEISCLDINPIGE-NPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSV 271
+L +EISC+DI+P + SQ+ +VG+W DI++RIF LP L I KE LGGEI+PRS+
Sbjct: 588 ELPHEISCIDISPFDSFMDTKSQLVSVGLWNDITLRIFKLPTLEEIWKEPLGGEILPRSI 647
Query: 272 LLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFA 331
L+ +F+ I Y+ C+LGDGHL F + + +L D++K++LGTQPI L+ F KNT ++FA
Sbjct: 648 LMISFDSIDYIFCSLGDGHLFKFQFDFSSFKLFDKRKLTLGTQPIILKKFKLKNTINIFA 707
Query: 332 ASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLH 391
SDRPTVIYS NKKL YS VNLK+V+++ FNS FP+S+AIA LTIGTID+IQKLH
Sbjct: 708 ISDRPTVIYSHNKKLFYSVVNLKDVTNVTSFNSDGFPNSMAIATTNSLTIGTIDEIQKLH 767
Query: 392 IRSIPLGEHP-RRICHQEQSRTFAICSLKNQS---------CAEESEMHFVRLLDDQTFE 441
I++IPL E RRI H E +A+ ++KN C E+ E+ ++R+ +DQTFE
Sbjct: 768 IKTIPLNEEMGRRIVHLEDHSCYAVITVKNNEGLLGGAQDLCEEDEEVSYIRIYNDQTFE 827
Query: 442 FISTYPLDTFEYGCSILSCSFS-DDSNVYYCVGTAYVLPEENEPTKGRILVF 492
IS+Y LD +E G SI C F+ DD N Y VGT+ P ++ GR+L+F
Sbjct: 828 LISSYKLDPYEMGWSITPCKFAGDDVNTYLAVGTSINTPIKSS---GRVLLF 876
Score = 619 (223.0 bits), Expect = 1.1e-175, Sum P(3) = 1.1e-175
Identities = 116/276 (42%), Positives = 190/276 (68%)
Query: 496 DGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWM-LRDDGTRELQSECGHHGHI 554
+GKL L+ E + + +VY L +FNG+L+AA+++++ ++ ++ + + SE H GH
Sbjct: 903 NGKLTLLEEIKFRSSVYFLLSFNGRLIAAVHKRLFSIRYTHSKEKNCKVISSESVHKGHT 962
Query: 555 LALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAE 614
+ L + +RG FI+VGD+MKS+SLL+ + +G++E+ AR+ W+ +V +++DD ++GAE
Sbjct: 963 MILKLASRGHFILVGDMMKSMSLLV-EQSDGSLEQIARNPQPIWIRSVAMINDDYFIGAE 1021
Query: 615 NNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIF 674
+ N V+KN++ + ER L+ VG YH+GE +N RHGSLV RLPDSD IPT+++
Sbjct: 1022 ASNNFIVVKKNNDSTNELERELLDSVGHYHIGESINSMRHGSLV-RLPDSDQPIIPTILY 1080
Query: 675 GTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLD 734
+VNG IGV+AS+ E ++F KLQ L +V++GVGG +HE WR+F+N+ T+D+KNF+D
Sbjct: 1081 ASVNGSIGVVASISEEDFIFFSKLQKGLNQVVRGVGGFSHETWRAFSNDHHTIDSKNFID 1140
Query: 735 GDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 770
GDLIE+FLDL + + ++ ++ +R+E L
Sbjct: 1141 GDLIETFLDLKYESQLKAVADLGITPDDAFRRIESL 1176
Score = 295 (108.9 bits), Expect = 1.1e-175, Sum P(3) = 1.1e-175
Identities = 54/89 (60%), Positives = 72/89 (80%)
Query: 10 QLIKLNLQPD-AKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIV 68
QLI+LN + D SYV LE + N+GP+VDFCVVD E+QGQ Q+VTCSG Y+DGSLRI+
Sbjct: 362 QLIRLNTEKDQTTDSYVTYLEAFTNIGPVVDFCVVDAEKQGQAQIVTCSGTYRDGSLRII 421
Query: 69 RNGIGINEQASVELQGIKGMWSLRSSTDD 97
RNGIGI EQAS+EL+GIKG++ + ++ ++
Sbjct: 422 RNGIGIAEQASIELEGIKGIFPINNNNNN 450
>UNIPROTKB|F1M680 [details] [associations]
symbol:Ddb1 "DNA damage-binding protein 1" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 RGD:621889
GO:GO:0005634 Gene3D:2.130.10.10 GO:GO:0003676 IPI:IPI00950036
Ensembl:ENSRNOT00000063867 ArrayExpress:F1M680 Uniprot:F1M680
Length = 600
Score = 922 (329.6 bits), Expect = 6.2e-142, Sum P(2) = 6.2e-142
Identities = 192/378 (50%), Positives = 253/378 (66%)
Query: 410 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 227 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 286
Query: 469 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 528
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 287 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 346
Query: 529 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 588
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 347 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 402
Query: 589 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 648
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 403 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 462
Query: 649 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 707
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 463 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 522
Query: 708 GVGGLNHE-QWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN--------- 757
+ L H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ +
Sbjct: 523 SLCSLTHLFTWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKR 582
Query: 758 -VSVEELCKRVEELTRLH 774
+ ++L K VEELTR+H
Sbjct: 583 EATADDLIKVVEELTRIH 600
Score = 487 (176.5 bits), Expect = 6.2e-142, Sum P(2) = 6.2e-142
Identities = 94/137 (68%), Positives = 113/137 (82%)
Query: 281 YLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIY 340
YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA SDRPTVIY
Sbjct: 60 YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY 119
Query: 341 SSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEH 400
SSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR++PL E
Sbjct: 120 SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES 179
Query: 401 PRRICHQEQSRTFAICS 417
PR+IC+QE S+ F + S
Sbjct: 180 PRKICYQEVSQCFGVLS 196
>WB|WBGene00010890 [details] [associations]
symbol:ddb-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0030163
"protein catabolic process" evidence=IMP] [GO:0007276 "gamete
generation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004871 Pfam:PF03178 UniPathway:UPA00143
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0005737
GO:GO:0040010 GO:GO:0002119 GO:GO:0003677 GO:GO:0006281
GO:GO:0040011 GO:GO:0016567 GO:GO:0007049 GO:GO:0040035
InterPro:IPR011047 SUPFAM:SSF50998 GO:GO:0030163 GO:GO:0007276
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
GeneTree:ENSGT00530000063396 EMBL:Z68507 PIR:A88855 PIR:T23798
RefSeq:NP_502299.1 HSSP:Q16531 ProteinModelPortal:Q21554
DIP:DIP-25884N IntAct:Q21554 MINT:MINT-1055778 STRING:Q21554
PaxDb:Q21554 EnsemblMetazoa:M18.5.1 EnsemblMetazoa:M18.5.2
GeneID:178156 KEGG:cel:CELE_M18.5 UCSC:M18.5 CTD:178156
WormBase:M18.5 InParanoid:Q21554 NextBio:899950 Uniprot:Q21554
Length = 1134
Score = 702 (252.2 bits), Expect = 9.2e-122, Sum P(2) = 9.2e-122
Identities = 161/429 (37%), Positives = 250/429 (58%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QLI+L +P+ GSY +LE Y N+GPI D +V E GQ Q+VTC+GA KDGSLR++R
Sbjct: 329 QLIRLMTEPNG-GSYSVILETYSNIGPIRDMVMV--ESDGQPQLVTCTGADKDGSLRVIR 385
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E ASV+L G+ G++ +R D D +++VS ET +L +
Sbjct: 386 NGIGIDELASVDLAGVVGIFPIR--LDSNADNYVIVSLSDETHVLQIT-GEELEDVKLLE 442
Query: 130 FCSQTQTLFCHDAIY-NQ---LVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANAS 185
+ T+F N ++Q T +RL+SS+ L W+ G ++ + NA+
Sbjct: 443 INTDLPTIFASTLFGPNDSGIILQATEKQIRLMSSSG--LSKFWEPTNGEIISKVSVNAA 500
Query: 186 QVLLATGGGHLVYL------EIG--DGILTEVKHAQLEYEISCLDINPIGENPSY-SQIA 236
+ VYL E+G D LT K + E EI+CLD++ G++P+ +
Sbjct: 501 NGQIVLAARDTVYLLTCIVDEMGALDIQLTAEK--KFENEIACLDLSNEGDDPNNKATFL 558
Query: 237 AVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLL 296
+ W+ ++ + LPDL + L +IIPRS++ E + YLL A GDG L+ ++
Sbjct: 559 VLAFWSTFAMEVIQLPDLITVCHTDLPTKIIPRSIIATCIEEVHYLLVAFGDGALVYYVF 618
Query: 297 NMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEV 356
++KTG + KK ++GT+P +L +KN H+F SDRP +I+S++KKL++SNVN+K V
Sbjct: 619 DIKTGTHGEPKKSNVGTRPPSLHRVRNKNRQHLFVCSDRPVIIFSASKKLVFSNVNVKLV 678
Query: 357 SHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAIC 416
+C +S+A+ D L I+ + GT+DDIQK+H+RSIP+GE RI +Q+ + T+ +C
Sbjct: 679 DTVCSLSSSAYRDCLVISDGNSMVFGTVDDIQKIHVRSIPMGESVLRIAYQKSTSTYGVC 738
Query: 417 SLKNQSCAE 425
S + +S AE
Sbjct: 739 SNRTESKAE 747
Score = 530 (191.6 bits), Expect = 9.2e-122, Sum P(2) = 9.2e-122
Identities = 120/354 (33%), Positives = 196/354 (55%)
Query: 434 LLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFI 493
+LD TF+ + ++ +E S +S F++DS+ YY VGT + P+E E GRI+VF
Sbjct: 785 VLDQNTFQVLHSHEFGPWETALSCISGQFTNDSSTYYVVGTGLIYPDETETKIGRIVVFE 844
Query: 494 VED---GKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGH 550
V+D KL+ + E +G+ ++ NGKL+AAIN I+L++W +EL+ EC
Sbjct: 845 VDDVERSKLRRVHELVVRGSPLAIRILNGKLVAAINSSIRLFEWTT----DKELRLECSS 900
Query: 551 HGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIY 610
H++AL ++ + + V D+M+S+SLL Y+ EG EE A+D+N+ WM E + +
Sbjct: 901 FNHVIALDLKVMNEEVAVADVMRSVSLLSYRMLEGNFEEVAKDWNSQWMVTCEFITAESI 960
Query: 611 LGAENNFNLFTVRKN-SEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQI 669
LG E + NLFTV + + TD+ R LE G ++LGE +LV++ DS +
Sbjct: 961 LGGEAHLNLFTVEVDKTRPITDDGRYVLEPTGYWYLGELPKVMTRSTLVIQPEDSIIQYS 1020
Query: 670 PTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDA 729
++FGT G IG+I + + FL ++ + +K + H +R+F +K+
Sbjct: 1021 QPIMFGTNQGTIGMIVQIDDKWKKFLIAIEKAIADSVKNCMHIEHSSYRTFVFQKRAEPP 1080
Query: 730 KNFLDGDLIESFLDLSRT-RMDEISKTMNVSVE--------ELCKRVEELTRLH 774
F+DGDL+ES LD+ R+ MD +SK + + E+ K +E+L R+H
Sbjct: 1081 SGFVDGDLVESILDMDRSVAMDILSKVSDKGWDPSLPRDPVEILKVIEDLARMH 1134
>UNIPROTKB|Q21554 [details] [associations]
symbol:ddb-1 "DNA damage-binding protein 1" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] InterPro:IPR004871 Pfam:PF03178
UniPathway:UPA00143 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0005737 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0006281 GO:GO:0040011 GO:GO:0016567 GO:GO:0007049
GO:GO:0040035 InterPro:IPR011047 SUPFAM:SSF50998 GO:GO:0030163
GO:GO:0007276 eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610
OMA:CALGDGS GeneTree:ENSGT00530000063396 EMBL:Z68507 PIR:A88855
PIR:T23798 RefSeq:NP_502299.1 HSSP:Q16531 ProteinModelPortal:Q21554
DIP:DIP-25884N IntAct:Q21554 MINT:MINT-1055778 STRING:Q21554
PaxDb:Q21554 EnsemblMetazoa:M18.5.1 EnsemblMetazoa:M18.5.2
GeneID:178156 KEGG:cel:CELE_M18.5 UCSC:M18.5 CTD:178156
WormBase:M18.5 InParanoid:Q21554 NextBio:899950 Uniprot:Q21554
Length = 1134
Score = 702 (252.2 bits), Expect = 9.2e-122, Sum P(2) = 9.2e-122
Identities = 161/429 (37%), Positives = 250/429 (58%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QLI+L +P+ GSY +LE Y N+GPI D +V E GQ Q+VTC+GA KDGSLR++R
Sbjct: 329 QLIRLMTEPNG-GSYSVILETYSNIGPIRDMVMV--ESDGQPQLVTCTGADKDGSLRVIR 385
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E ASV+L G+ G++ +R D D +++VS ET +L +
Sbjct: 386 NGIGIDELASVDLAGVVGIFPIR--LDSNADNYVIVSLSDETHVLQIT-GEELEDVKLLE 442
Query: 130 FCSQTQTLFCHDAIY-NQ---LVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANAS 185
+ T+F N ++Q T +RL+SS+ L W+ G ++ + NA+
Sbjct: 443 INTDLPTIFASTLFGPNDSGIILQATEKQIRLMSSSG--LSKFWEPTNGEIISKVSVNAA 500
Query: 186 QVLLATGGGHLVYL------EIG--DGILTEVKHAQLEYEISCLDINPIGENPSY-SQIA 236
+ VYL E+G D LT K + E EI+CLD++ G++P+ +
Sbjct: 501 NGQIVLAARDTVYLLTCIVDEMGALDIQLTAEK--KFENEIACLDLSNEGDDPNNKATFL 558
Query: 237 AVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLL 296
+ W+ ++ + LPDL + L +IIPRS++ E + YLL A GDG L+ ++
Sbjct: 559 VLAFWSTFAMEVIQLPDLITVCHTDLPTKIIPRSIIATCIEEVHYLLVAFGDGALVYYVF 618
Query: 297 NMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEV 356
++KTG + KK ++GT+P +L +KN H+F SDRP +I+S++KKL++SNVN+K V
Sbjct: 619 DIKTGTHGEPKKSNVGTRPPSLHRVRNKNRQHLFVCSDRPVIIFSASKKLVFSNVNVKLV 678
Query: 357 SHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAIC 416
+C +S+A+ D L I+ + GT+DDIQK+H+RSIP+GE RI +Q+ + T+ +C
Sbjct: 679 DTVCSLSSSAYRDCLVISDGNSMVFGTVDDIQKIHVRSIPMGESVLRIAYQKSTSTYGVC 738
Query: 417 SLKNQSCAE 425
S + +S AE
Sbjct: 739 SNRTESKAE 747
Score = 530 (191.6 bits), Expect = 9.2e-122, Sum P(2) = 9.2e-122
Identities = 120/354 (33%), Positives = 196/354 (55%)
Query: 434 LLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFI 493
+LD TF+ + ++ +E S +S F++DS+ YY VGT + P+E E GRI+VF
Sbjct: 785 VLDQNTFQVLHSHEFGPWETALSCISGQFTNDSSTYYVVGTGLIYPDETETKIGRIVVFE 844
Query: 494 VED---GKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGH 550
V+D KL+ + E +G+ ++ NGKL+AAIN I+L++W +EL+ EC
Sbjct: 845 VDDVERSKLRRVHELVVRGSPLAIRILNGKLVAAINSSIRLFEWTT----DKELRLECSS 900
Query: 551 HGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIY 610
H++AL ++ + + V D+M+S+SLL Y+ EG EE A+D+N+ WM E + +
Sbjct: 901 FNHVIALDLKVMNEEVAVADVMRSVSLLSYRMLEGNFEEVAKDWNSQWMVTCEFITAESI 960
Query: 611 LGAENNFNLFTVRKN-SEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQI 669
LG E + NLFTV + + TD+ R LE G ++LGE +LV++ DS +
Sbjct: 961 LGGEAHLNLFTVEVDKTRPITDDGRYVLEPTGYWYLGELPKVMTRSTLVIQPEDSIIQYS 1020
Query: 670 PTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDA 729
++FGT G IG+I + + FL ++ + +K + H +R+F +K+
Sbjct: 1021 QPIMFGTNQGTIGMIVQIDDKWKKFLIAIEKAIADSVKNCMHIEHSSYRTFVFQKRAEPP 1080
Query: 730 KNFLDGDLIESFLDLSRT-RMDEISKTMNVSVE--------ELCKRVEELTRLH 774
F+DGDL+ES LD+ R+ MD +SK + + E+ K +E+L R+H
Sbjct: 1081 SGFVDGDLVESILDMDRSVAMDILSKVSDKGWDPSLPRDPVEILKVIEDLARMH 1134
>UNIPROTKB|B4DG00 [details] [associations]
symbol:DDB1 "cDNA FLJ52436, highly similar to DNA
damage-binding protein 1" species:9606 "Homo sapiens" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
GO:GO:0005634 Gene3D:2.130.10.10 GO:GO:0003676 EMBL:AP003108
UniGene:Hs.290758 HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037
EMBL:AK294341 IPI:IPI00909177 SMR:B4DG00 STRING:B4DG00
Ensembl:ENST00000450997 UCSC:uc010rle.1 HOGENOM:HOG000069916
HOVERGEN:HBG102355 Uniprot:B4DG00
Length = 451
Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
Identities = 193/377 (51%), Positives = 254/377 (67%)
Query: 410 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 79 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 138
Query: 469 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK 528
Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN
Sbjct: 139 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 198
Query: 529 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 588
++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG E
Sbjct: 199 VRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 254
Query: 589 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEF 648
E ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEF
Sbjct: 255 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEF 314
Query: 649 VNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIK 707
VN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK
Sbjct: 315 VNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIK 374
Query: 708 GVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN---------- 757
VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ +
Sbjct: 375 SVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKRE 434
Query: 758 VSVEELCKRVEELTRLH 774
+ ++L K VEELTR+H
Sbjct: 435 ATADDLIKVVEELTRIH 451
>ASPGD|ASPL0000052925 [details] [associations]
symbol:ddbA species:162425 "Emericella nidulans"
[GO:0006282 "regulation of DNA repair" evidence=IEA;ISA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEP;IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0070913 "Ddb1-Wdr21
complex" evidence=IEA] [GO:0008180 "signalosome" evidence=IEA]
[GO:0070912 "Ddb1-Ckn1 complex" evidence=IEA] [GO:0031465
"Cul4B-RING ubiquitin ligase complex" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0040020 "regulation of meiosis" evidence=IEA] [GO:0042787
"protein ubiquitination involved in ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0007090 "regulation of S phase
of mitotic cell cycle" evidence=IEA] [GO:0034644 "cellular response
to UV" evidence=IEA] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10 EMBL:BN001308
GO:GO:0003676 EMBL:AACD01000007 KO:K10610 OMA:DRPAVIY
OrthoDB:EOG473T0C RefSeq:XP_658200.1 STRING:Q5BFT4
EnsemblFungi:CADANIAT00002078 GeneID:2876375 KEGG:ani:AN0596.2
eggNOG:NOG316722 HOGENOM:HOG000216556 Uniprot:Q5BFT4
Length = 1132
Score = 796 (285.3 bits), Expect = 5.1e-79, P = 5.1e-79
Identities = 228/781 (29%), Positives = 389/781 (49%)
Query: 26 EVLERYVNLGPIVDFCVVDL-----ERQ------GQGQVVTCSGAYKDGSLRIVRNGIGI 74
+V++ N+ P++DF ++DL E Q GQ ++VT SGA+ DG+LR VR+G+G+
Sbjct: 363 QVIQTLSNIAPVLDFTIMDLGNRTSENQMHEFSSGQARIVTGSGAFDDGTLRSVRSGVGL 422
Query: 75 NEQASV-ELQGIKGMWSLR-SSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXX-GFC 131
E + +++ I +W L+ S D DT L+V+F++ETR+ + G
Sbjct: 423 EELGVLGDMEHITDLWGLQVGSRGDFLDT-LLVTFVNETRVFRFSPDGEAEELESFLGLS 481
Query: 132 SQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLAT 191
TL + ++++QVT V + EW + A+AN ++L
Sbjct: 482 LSENTLLAANLPGSRILQVTEQRVLIADIECGMTIFEWTPKNQLIITAASANDDTIVLVA 541
Query: 192 GGGHLVYLEI-GDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFS 250
GG H+ L+I + + K + +IS + + P P+ + VG V +
Sbjct: 542 GGKHVTVLDIQSEARVVSEKDFGADNQISGVTL-PT--TPT--DVCIVGFPQLAKVSVLK 596
Query: 251 LPDLNLITKEHLG--GEIIPRSVLLCAF--EGISYLLCALGDGHLLNFLLNMKTGELTDR 306
L DL+ I+ LG GE PRSVL+ + E L ++ DG ++ + N + L+
Sbjct: 597 LQDLSHISSTSLGPAGEAFPRSVLVASVLAENAPTLFISMADGSVITYDYNDQDHSLSGM 656
Query: 307 KKVSLGTQPITLRTFSSKN-TTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSA 365
K+ LG++ T + N ++VFA + P++IY S +++YS VN + S +C FNS
Sbjct: 657 NKLVLGSEQPTFKKLPRGNGLSNVFATCENPSLIYGSEGRIIYSAVNSEGASRICHFNSE 716
Query: 366 AFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAE 425
A+P+S+A+A EL IG +D + I+++P+ RR+ + + F + +++ + +
Sbjct: 717 AYPESIAVATAQELKIGLVDKERTTQIQTLPIKATVRRVAYSPSEKAFGMGTIERKLVSG 776
Query: 426 ES--EMHFVRLLDDQTFEFISTYPLDTFEY-GCSILS-CSFSDDSNVY--YCVGTAYVLP 479
E + FV L D+ F + + L+ E C I + S D + VG+AY+
Sbjct: 777 EEIVKSQFV-LADEILFRRLDAFDLEGEEIVECVIRAEAPESKDGEAKDRFVVGSAYLGE 835
Query: 480 EENEPTKGRILVFIVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRD 538
++ + T G I VF V++G KL +A++ KGA +L K++AA+ + + +++ + R
Sbjct: 836 DDGDSTLGYIRVFEVDNGRKLAKVAQERVKGACRALAVMGDKIVAALVKTVVVFQVVPRS 895
Query: 539 DGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKH-EEGA---IEERARDY 594
G +LQ + + + + I + DLMKS+ ++ Y E GA + E AR +
Sbjct: 896 GGL-QLQRLASYRTSTAPVDITVTRNVIAIADLMKSVCVVEYHEGENGAPDKLVEVARHF 954
Query: 595 NANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRH 654
W + V + D YL ++ NL +R+N G +++R RLEV GE L E VNR R
Sbjct: 955 QTVWATGVTSVAPDTYLESDAEGNLIVLRRNRSGVEEDDRRRLEVTGEICLNEMVNRIRP 1014
Query: 655 GSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNH 714
+ + +LP + V +P TV G I + A + + FL +LQ + +GG+
Sbjct: 1015 VN-IQQLPSATV--VPRAFLATVEGSIYLYAIINPDYQDFLMRLQATMASRADSLGGIPF 1071
Query: 715 EQWRSFNN-EKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRL 773
+R+F ++ + F+DG+LIE FL EI + S+EE+ VE L RL
Sbjct: 1072 TDYRAFRTMTRQATEPYRFVDGELIERFLTCEPAVQKEIVDIVGSSLEEVRAIVEALRRL 1131
Query: 774 H 774
H
Sbjct: 1132 H 1132
>UNIPROTKB|F5H6C5 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI00909008
ProteinModelPortal:F5H6C5 SMR:F5H6C5 Ensembl:ENST00000535967
ArrayExpress:F5H6C5 Bgee:F5H6C5 Uniprot:F5H6C5
Length = 272
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 145/274 (52%), Positives = 193/274 (70%)
Query: 28 LERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKG 87
+E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG
Sbjct: 1 METFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKG 60
Query: 88 MWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQL 147
+W LRS + D LV+SF+ +TR+L +N GF QT FC + + QL
Sbjct: 61 LWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQL 119
Query: 148 VQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILT 207
+Q+TS SVRLVS + L +EWK P +++VA+ N+SQV++A G L YL+I L
Sbjct: 120 IQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELR 178
Query: 208 EVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEII 267
++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEII
Sbjct: 179 QISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEII 238
Query: 268 PRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTG 301
PRS+L+ FE YLLCALGDG L F LN++TG
Sbjct: 239 PRSILMTTFESSHYLLCALGDGALFYFGLNIETG 272
>UNIPROTKB|F5H581 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI00909251
ProteinModelPortal:F5H581 SMR:F5H581 Ensembl:ENST00000535147
ArrayExpress:F5H581 Bgee:F5H581 Uniprot:F5H581
Length = 267
Score = 686 (246.5 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 129/204 (63%), Positives = 161/204 (78%)
Query: 214 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLL 273
+E+E++CLDI P+G++ S + A+G+WTDIS RI LP L+ KE LGGEIIPRS+L+
Sbjct: 1 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILM 60
Query: 274 CAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS 333
FE YLLCALGDG L F LN++TG L+DRKKV+LGTQP LRTF S +TT+VFA S
Sbjct: 61 TTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS 120
Query: 334 DRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIR 393
DRPTVIYSSN KL++SNVNLKEV++MCP NS +PDSLA+A LTIGTID+IQKLHIR
Sbjct: 121 DRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIR 180
Query: 394 SIPLGEHPRRICHQEQSRTFAICS 417
++PL E PR+IC+QE S+ F + S
Sbjct: 181 TVPLYESPRKICYQEVSQCFGVLS 204
Score = 48 (22.0 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 410 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFE 441
S+ F+ + ++ S EE E+H + ++D TFE
Sbjct: 235 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFE 267
>UNIPROTKB|F5H775 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI01015574
ProteinModelPortal:F5H775 SMR:F5H775 Ensembl:ENST00000537877
ArrayExpress:F5H775 Bgee:F5H775 Uniprot:F5H775
Length = 240
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 128/228 (56%), Positives = 166/228 (72%)
Query: 129 GFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVL 188
GF QT FC + + QL+Q+TS SVRLVS + L +EWK P +++VA+ N+SQV+
Sbjct: 14 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 73
Query: 189 LATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRI 248
+A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 74 VAVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARI 132
Query: 249 FSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKK 308
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKK
Sbjct: 133 LKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKK 192
Query: 309 VSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEV 356
V+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV
Sbjct: 193 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEV 240
>UNIPROTKB|G4N4E2 [details] [associations]
symbol:MGG_16867 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
GO:GO:0005634 Gene3D:2.130.10.10 EMBL:CM001233 GO:GO:0003676
RefSeq:XP_003712617.1 EnsemblFungi:MGG_16867T0 GeneID:12985117
KEGG:mgr:MGG_16867 Uniprot:G4N4E2
Length = 1183
Score = 471 (170.9 bits), Expect = 2.3e-61, Sum P(2) = 2.3e-61
Identities = 157/559 (28%), Positives = 252/559 (45%)
Query: 49 GQGQVVTCSGAYKDGSLRIVRNGIGINEQASV--ELQGIKGMWSLRSSTDDPFDTFLVVS 106
GQ ++VT SGA KDGSLR VR+G+G+ + + E+ G+ G++SL+S D DT LVVS
Sbjct: 417 GQARIVTASGAQKDGSLRSVRSGVGLEDIGVITDEISGVTGLFSLKSYGSDVEDT-LVVS 475
Query: 107 FISETRILAMNLXXXXXXXXXX-GFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSREL 165
F++ETR+ + G TL ++ VT L +
Sbjct: 476 FLTETRVFRFDKQGEVEELSQLQGLDISQPTLLVLGLDNGHVLYVTEEKATLFDAEGGVT 535
Query: 166 RNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQL-EYEISCLDIN 224
+ W G + A++N VLL+ G LV L IG + + + E +ISC
Sbjct: 536 ISSWSPTSGKPITHASSNGRWVLLSVDGRKLVSLNIGLDLKVSAESEERDEDQISC---- 591
Query: 225 PIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHL----GGEIIPRSVLLC----AF 276
+ +P + AVG W+ ++ I L L E L ++ R V+L A
Sbjct: 592 -VNASPHLLDVGAVGFWSSGTISIIDLKTLEATQTEKLRRNEDDAVVAREVVLARVLPAE 650
Query: 277 EGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKN-TTHVFAASDR 335
L + DG ++ F+ N G L+ RK V LGT+ R N +F +
Sbjct: 651 VANPTLFVSKDDGEVMTFVYN-DNGTLSSRKSVVLGTREARFRVLPQPNGLCSIFVTCEH 709
Query: 336 PTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEG------ELTIGTIDDIQK 389
++I+ + ++++YS V +++CPF++AAF D LA+A E EL I ID ++
Sbjct: 710 SSLIHGAERRIVYSAVTAHSAAYVCPFDTAAFRDCLAVATESAIDRRMELKISRIDRQRQ 769
Query: 390 LHIRSIPLGEHPRRICHQEQSRTFAI-CSLKNQSCAEESEMHFVRLLDDQTFEFI-STYP 447
+ + P+GE+ R I + + F + C + S E +L D+ FE + +
Sbjct: 770 CQMMTRPMGENVRSIAYSSADKVFGLGCIRRVLSRGIEKVYGTFKLFDEVIFEPKGNVFA 829
Query: 448 LDTFEYG-C---SILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQ-LI 502
L+ E C + L S+ + + + VGT Y L GR+LVF V++ + LI
Sbjct: 830 LEDGEVPECVTRAPLLDSYGEQAE-RFIVGTRY-LSGTGSGHGGRVLVFGVDESRSPYLI 887
Query: 503 AEKETKGAVYSLNAFNGKLLA-AINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQT 561
TK + + LL A+ + + L ++ + + A+ V
Sbjct: 888 HAHSTKSGCRRIATMDDDLLVIALTKTVVLVRYSETSTTSAKFLKVAAFQTSSYAVDVTV 947
Query: 562 RGDFIVVGDLMKSISLLIY 580
G I V D+MKSI+LL Y
Sbjct: 948 HGKLIAVADIMKSITLLEY 966
Score = 271 (100.5 bits), Expect = 5.4e-39, Sum P(2) = 5.4e-39
Identities = 87/286 (30%), Positives = 134/286 (46%)
Query: 10 QLIKLNLQPDA-KG-SYVEVLERYVNLGPIVDFCVVDL-ERQG-----------QGQVVT 55
Q +NL DA KG S++E+ + N+ PI+DF V+D+ R+G Q ++VT
Sbjct: 364 QFYDVNLFADAAKGESFLELRQTIENIAPILDFAVMDMGNREGDSQLGNEYSSGQARIVT 423
Query: 56 CSGAYKDGSLRIVRNGIGINEQASV--ELQGIKGMWSLRSSTDDPFDTFLVVSFISETRI 113
SGA KDGSLR VR+G+G+ + + E+ G+ G++SL+S D DT LVVSF++ETR+
Sbjct: 424 ASGAQKDGSLRSVRSGVGLEDIGVITDEISGVTGLFSLKSYGSDVEDT-LVVSFLTETRV 482
Query: 114 LAMNLXXXXXXXXXX-GFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSP 172
+ G TL ++ VT L + + W
Sbjct: 483 FRFDKQGEVEELSQLQGLDISQPTLLVLGLDNGHVLYVTEEKATLFDAEGGVTISSWSPT 542
Query: 173 PGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQL-EYEISCLDINPIGENPS 231
G + A++N VLL+ G LV L IG + + + E +ISC + +P
Sbjct: 543 SGKPITHASSNGRWVLLSVDGRKLVSLNIGLDLKVSAESEERDEDQISC-----VNASPH 597
Query: 232 YSQIAAVGMWTDISVRIFSLPDLNLITKEHL----GGEIIPRSVLL 273
+ AVG W+ ++ I L L E L ++ R V+L
Sbjct: 598 LLDVGAVGFWSSGTISIIDLKTLEATQTEKLRRNEDDAVVAREVVL 643
Score = 237 (88.5 bits), Expect = 2.3e-61, Sum P(2) = 2.3e-61
Identities = 55/195 (28%), Positives = 102/195 (52%)
Query: 583 EEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGE 642
++ + E RDY A W +AV L+ D ++ A+ + NL + +N+ G T E++ R+++ E
Sbjct: 993 KQAKLVEVCRDYQAMWSTAVSHLEGDSWIVADGDGNLVVLLRNTAGVTLEDKRRMQMTSE 1052
Query: 643 YHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASL-PHEQYLFLEKLQTN 701
+ LGE VN+ + VM ++ + T G I + ++ P Q L ++ Q N
Sbjct: 1053 FGLGECVNKIQK---VMVETSANAPIVAKAFLSTTEGSIYLFGTVAPKFQSLLMD-FQAN 1108
Query: 702 LRKVIKG-VGGLNHEQWRSFNN-EKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVS 759
+ + +G L QWRSF N E++ + FLDG+ +E FLD+ +I + ++ +
Sbjct: 1109 MEAHVSSPLGELQFNQWRSFRNPEREGAGPERFLDGEFLEMFLDMEENTQIDICQGLSYT 1168
Query: 760 VEELCKRVEELTRLH 774
E++ + E+ +H
Sbjct: 1169 AEDMRNLIGEMKNMH 1183
Score = 49 (22.3 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 270 SVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQ 314
S + EG S+++ A GDG+L+ L N L D++++ + ++
Sbjct: 1009 STAVSHLEGDSWIV-ADGDGNLVVLLRNTAGVTLEDKRRMQMTSE 1052
>UNIPROTKB|F5H0Y5 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 GO:GO:0016055
Gene3D:2.130.10.10 GO:GO:0003684 EMBL:AP003108 HGNC:HGNC:2717
ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI00909177
ProteinModelPortal:F5H0Y5 SMR:F5H0Y5 Ensembl:ENST00000539332
ArrayExpress:F5H0Y5 Bgee:F5H0Y5 Uniprot:F5H0Y5
Length = 204
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 125/207 (60%), Positives = 157/207 (75%)
Query: 477 VLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWML 536
V PEE EP +GRI+VF DGKLQ +AEKE KGAVYS+ FNGKLLA+IN ++LY+W
Sbjct: 2 VYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTT 61
Query: 537 RDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNA 596
+EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N
Sbjct: 62 E----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNP 117
Query: 597 NWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGS 656
NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGS
Sbjct: 118 NWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGS 177
Query: 657 LVMR-LPDSDVGQIPTVIFGTVNGVIG 682
LVM+ L ++ +V+FGTVNG+IG
Sbjct: 178 LVMQNLGETSTPTQGSVLFGTVNGMIG 204
>POMBASE|SPAC17H9.10c [details] [associations]
symbol:ddb1 "damaged DNA binding protein Ddb1"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006279 "premeiotic DNA replication" evidence=TAS] [GO:0006282
"regulation of DNA repair" evidence=IMP] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IMP]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0007090 "regulation of S phase of mitotic cell cycle"
evidence=IMP] [GO:0034644 "cellular response to UV" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IGI] [GO:0042787
"protein ubiquitination involved in ubiquitin-dependent protein
catabolic process" evidence=IMP] [GO:0051445 "regulation of meiotic
cell cycle" evidence=IGI] [GO:0070912 "Ddb1-Ckn1 complex"
evidence=IDA] [GO:0070913 "Ddb1-Wdr21 complex" evidence=IDA]
[GO:0008180 "signalosome" evidence=IDA] [GO:0031465 "Cul4B-RING
ubiquitin ligase complex" evidence=IDA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143
PomBase:SPAC17H9.10c GO:GO:0005829 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR Gene3D:2.130.10.10 GO:GO:0003677
GO:GO:0007049 InterPro:IPR011047 SUPFAM:SSF50998 GO:GO:0034644
GO:GO:0040020 GO:GO:0042787 GO:GO:0007090 GO:GO:0006283
GO:GO:0006282 GO:GO:0006279 GO:GO:0070912 eggNOG:NOG247734
KO:K10610 OMA:CALGDGS PIR:T37876 RefSeq:NP_593580.1 IntAct:O13807
STRING:O13807 EnsemblFungi:SPAC17H9.10c.1 GeneID:2542207
KEGG:spo:SPAC17H9.10c OrthoDB:EOG473T0C NextBio:20803277
GO:GO:0070913 Uniprot:O13807
Length = 1072
Score = 615 (221.5 bits), Expect = 9.0e-61, Sum P(2) = 9.0e-61
Identities = 181/692 (26%), Positives = 351/692 (50%)
Query: 99 FDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIY--NQLVQVTSGSVR 156
+D ++ +S I ETR + ++ C ++ T+F IY +Q++Q+T+ +R
Sbjct: 418 YDNYIFLSLICETRAIIVSPEGVFSANHDLS-CEES-TIFV-STIYGNSQILQITTKEIR 474
Query: 157 LVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEY 216
L ++L + W SP S+ ++ A V +A GG +++ E GI TEV Q +
Sbjct: 475 LFDG--KKLHS-WISP--MSITCGSSFADNVCVAVAGGLILFFE---GI-TEVGRYQCDT 525
Query: 217 EISCLDINPIGENPSYSQIAAVGMWT-DISVRIFSLPDLNLITKEHLGGEIIPRSVLLCA 275
E+S L EN Y VG+W+ DI + + ++L L IPRS++
Sbjct: 526 EVSSLCFTE--ENVVY-----VGLWSADIIMLTYCQDGISLTHSLKLTD--IPRSIVYSQ 576
Query: 276 FEGIS--YLLCALGDGHLLNFLLNMKTGELTDR--KKVSLGTQPITLRTFSSKNTTHVFA 331
G L + +G++L F N + G++ + ++ LG PI L+ F SK +FA
Sbjct: 577 KYGDDGGTLYVSTNNGYVLMF--NFQNGQVIEHSLRRNQLGVAPIILKHFDSKEKNAIFA 634
Query: 332 ASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLH 391
++P ++Y + KL+ + ++ E+ ++ + + + ++ +++ + +I+ L+
Sbjct: 635 LGEKPQLMYYESDKLVITPLSCTEMLNISSYVNPSLGVNMLYCTNSYISLAKMSEIRSLN 694
Query: 392 IRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESE--MHFVRLLDDQTFEFISTYPLD 449
++++ + PRRIC F +C +S + + + F+R+ + T I+ + +
Sbjct: 695 VQTVSVKGFPRRICSNSLFY-FVLCMQLEESIGTQEQRLLSFLRVYEKNTLSEIAHHKFN 753
Query: 450 TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVF-IVEDGKLQLIAEKETK 508
+E SI+ +DD V VGT + P+++ P GR++VF + D +++ AE + +
Sbjct: 754 EYEMVESIIL--MNDDKRVV--VGTGFNFPDQDAPDSGRLMVFEMTSDNNIEMQAEHKVQ 809
Query: 509 GAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVV 568
G+V +L + ++A IN + ++++ + GT +++ + + + V D I+
Sbjct: 810 GSVNTLVLYKHLIVAGINASVCIFEY---EHGTMHVRNSIRTPTYTIDISVNQ--DEIIA 864
Query: 569 GDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEG 628
DLMKSI++L + ++ + E ARDY+ W ++VEIL + Y E + N + +++
Sbjct: 865 ADLMKSITVLQFIDDQ--LIEVARDYHPLWATSVEILSERKYFVTEADGNAVILLRDNVS 922
Query: 629 ATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLP 688
+R +L +++LGE +N+ RH + + S V P ++ TV+G + ++
Sbjct: 923 PQLSDRKKLRWYKKFYLGELINKTRHCTFIEPQDKSLV--TPQLLCATVDGSLMIVGDAG 980
Query: 689 HEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTR 748
L +LQ N+RKVI GGL+H++W+ + E +T + +DG LIES L L
Sbjct: 981 MSNTPLLLQLQDNIRKVIPSFGGLSHKEWKEYRGENET-SPSDLIDGSLIESILGLREPI 1039
Query: 749 MDEI------SKTMNVSVEELCKRVEELTRLH 774
++EI +++SV++L +E L +LH
Sbjct: 1040 LNEIVNGGHEGTKLDISVQDLKSIIENLEKLH 1071
Score = 269 (99.8 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 71/213 (33%), Positives = 121/213 (56%)
Query: 12 IKLNLQPDAKGSY-VEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRN 70
+ L L K ++ +E+L+ +VN+ PI DF ++D ++ G ++TCSGAYKDG+LRI+RN
Sbjct: 334 VLLQLPSITKNNHKLEILQNFVNIAPISDF-IIDDDQTGSS-IITCSGAYKDGTLRIIRN 391
Query: 71 GIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGF 130
I I A +E++GIK +S+ + +D ++ +S I ETR + ++
Sbjct: 392 SINIENVALIEMEGIKDFFSVSFRAN--YDNYIFLSLICETRAIIVSPEGVFSANHDLS- 448
Query: 131 CSQTQTLFCHDAIY--NQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVL 188
C ++ T+F IY +Q++Q+T+ +RL ++L + W SP S+ ++ A V
Sbjct: 449 CEES-TIFV-STIYGNSQILQITTKEIRLFDG--KKLHS-WISP--MSITCGSSFADNVC 501
Query: 189 LATGGGHLVYLEIGDGILTEVKHAQLEYEISCL 221
+A GG +++ E GI TEV Q + E+S L
Sbjct: 502 VAVAGGLILFFE---GI-TEVGRYQCDTEVSSL 530
Score = 41 (19.5 bits), Expect = 9.0e-61, Sum P(2) = 9.0e-61
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 43 VDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI 85
++LE+ G+ + +C A D L + G N ++L I
Sbjct: 302 MELEKLGESSIASCLIALPDNHLFV---GSHFNNSVLLQLPSI 341
>DICTYBASE|DDB_G0282569 [details] [associations]
symbol:sf3b3 "splicing factor 3B subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA;ISS] [GO:0006461 "protein
complex assembly" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=IEA;ISS] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 dictyBase:DDB_G0282569 GO:GO:0006461 GO:GO:0008380
Gene3D:2.130.10.10 SUPFAM:SSF50978 EMBL:AAFI02000047
GenomeReviews:CM000152_GR GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0030532 eggNOG:NOG247734 KO:K12830 OMA:FDTIPVA
RefSeq:XP_640132.1 STRING:Q54SA7 EnsemblProtists:DDB0233171
GeneID:8623669 KEGG:ddi:DDB_G0282569 ProtClustDB:CLSZ2729005
Uniprot:Q54SA7
Length = 1256
Score = 326 (119.8 bits), Expect = 2.0e-48, Sum P(2) = 2.0e-48
Identities = 127/493 (25%), Positives = 223/493 (45%)
Query: 309 VSLGTQPI-TLRTFSSKNTTH-VFAASDRPTVIYSSNKKL-LYSNVNLKEVSHMCPFNSA 365
V L +P+ SS+ + + A S+ +I+S +K L++ +K + P
Sbjct: 770 VPLSIEPLENASNLSSEQSAESIVATSENKIIIFSIDKLGDLFNQETIK--LNATPKRFI 827
Query: 366 AFPD-SLAIAKEGELTIGTID-DIQKLHIRSIPLGEHPRRICHQE-------QSRTFAIC 416
P S I E E T + DI K++ +S L ++ QE Q+ I
Sbjct: 828 IHPQTSYIIILETETNYNTDNIDIDKINEQSEKLLLEKQKELQQEMDIDDDDQNNNNEIE 887
Query: 417 SLKN---QSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVG 473
K + +++++D T E + + L+ E G S+ +CSF + ++ VG
Sbjct: 888 PFKKLFKPKAGKGKWKSYIKIMDPITHESLESLMLEDGEAGFSVCTCSFGESGEIFLVVG 947
Query: 474 --TAYVL-PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQ 530
T VL P+ ++ + FI KL+L+ + E + VY++ F GKL+ + + I+
Sbjct: 948 CVTDMVLNPKSHKSAHLNLYRFIDGGKKLELLYKTEVEEPVYAMAQFQGKLVCGVGKSIR 1007
Query: 531 LYKWMLRDDGTRELQSECGHHGHILALY-VQTRGDFIVVGDLMKSISLLIYKHEEGAIEE 589
+Y D G ++L +C + + + GD +VVGD+ +SI + YK E +
Sbjct: 1008 IY-----DMGKKKLLRKCETKNLPNTIVNIHSLGDRLVVGDIQESIHFIKYKRSENMLYV 1062
Query: 590 RARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKN---SEGATDEERG---RLE---VV 640
A D WM++ +LD D GA+ N+F +R S+ ++ G + E +
Sbjct: 1063 FADDLAPRWMTSSVMLDYDTVAGADKFGNIFVLRLPLLISDEVEEDPTGTKLKFESGTLN 1122
Query: 641 GEYHLGEFVNRFRHGSLVMRLPDSD--VGQIPTVIFGTVNGVIG-VIASLPHEQYLFLEK 697
G H + + F G V L + VG +++ T++G IG +I E F
Sbjct: 1123 GAPHKLDHIANFFVGDTVTTLNKTSLVVGGPEVILYTTISGAIGALIPFTSREDVDFFST 1182
Query: 698 LQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN 757
L+ N+R + G +H +RS+ KN +DGDL E F L+ + IS+ ++
Sbjct: 1183 LEMNMRSDCLPLCGRDHLAYRSYY-----FPVKNIIDGDLCEQFSTLNYQKQLSISEELS 1237
Query: 758 VSVEELCKRVEEL 770
S E+ K++EE+
Sbjct: 1238 RSPSEVIKKLEEI 1250
Score = 270 (100.1 bits), Expect = 2.0e-48, Sum P(2) = 2.0e-48
Identities = 67/226 (29%), Positives = 118/226 (52%)
Query: 33 NLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWSL 91
+L PI+DF V+DL R+ Q+ + G + SL+++R+G+ + + L G+ G+W++
Sbjct: 416 SLSPIIDFKVLDLVREENPQLYSLCGTGLNSSLKVLRHGLSVTTITTANLPGVPSGIWTV 475
Query: 92 RSSTD----DPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQL 147
ST D D ++VVSF+ T +L++ G T TL + +
Sbjct: 476 PKSTSPNAIDQTDKYIVVSFVGTTSVLSVG--DTIQENHESGILETTTTLLVKSMGDDAI 533
Query: 148 VQVTSGSVRLVSSTSRELR-NEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGI- 205
+QV R + S +LR NEW++P ++ A+AN SQ+ +A GG ++Y E+
Sbjct: 534 IQVFPTGFRHIKS---DLRINEWRAPGRKTIVRASANQSQLAIALSGGEIIYFELDQASN 590
Query: 206 LTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL 251
L E+ L +I+C++I+PI + + ++ AV W +R+ SL
Sbjct: 591 LIEIIKKDLRRDIACIEISPIPKGRNMARFIAVSDWEG-PIRVLSL 635
Score = 104 (41.7 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
Identities = 34/135 (25%), Positives = 64/135 (47%)
Query: 278 GISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPT 337
G +L L +G + L+ TGEL+D + LG +P+ L + + + A S R
Sbjct: 699 GSLFLFVGLKNGVVKRATLDSVTGELSDIRTRLLGRKPVKLFKVKVRGSNAMLALSSRVW 758
Query: 338 VIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKL-HIRSIP 396
+ Y + KL ++++ + + +S +S+ E ++ I +ID + L + +I
Sbjct: 759 LNYINQGKLDIVPLSIEPLENASNLSSEQSAESIVATSENKIIIFSIDKLGDLFNQETIK 818
Query: 397 LGEHPRR-ICHQEQS 410
L P+R I H + S
Sbjct: 819 LNATPKRFIIHPQTS 833
Score = 57 (25.1 bits), Expect = 4.5e-26, Sum P(2) = 4.5e-26
Identities = 36/175 (20%), Positives = 75/175 (42%)
Query: 154 SVRLVSSTSRELRNEWK---SPPGYSVNVATANASQVLLATGGGHL-VYLEIGDGILTEV 209
S+ ++ E+ E K S G + T+ +S T GG L +++ + +G++
Sbjct: 656 SLSIIEMQLNEMGIETKKSQSQTGQTTTTTTSTSSASSSVTSGGSLFLFVGLKNGVVKRA 715
Query: 210 KHAQLEYEISCLDINPIGENP-SYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIP 268
+ E+S + +G P ++ G ++ + + S LN I + L +I+P
Sbjct: 716 TLDSVTGELSDIRTRLLGRKPVKLFKVKVRG--SNAMLALSSRVWLNYINQGKL--DIVP 771
Query: 269 RSVLLCAFEGISYL--------LCALGDGHLLNFLLNMKTGELTDRKKVSLGTQP 315
S+ E S L + A + ++ F ++ K G+L +++ + L P
Sbjct: 772 LSIE--PLENASNLSSEQSAESIVATSENKIIIFSID-KLGDLFNQETIKLNATP 823
>TAIR|locus:2100616 [details] [associations]
symbol:SAP130a "spliceosome-associated protein 130 a"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] [GO:0009555 "pollen
development" evidence=IMP] [GO:0009846 "pollen germination"
evidence=IMP] [GO:0048481 "ovule development" evidence=IMP]
InterPro:IPR001680 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 SMART:SM00320 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 EMBL:CP002686 Gene3D:2.130.10.10 GO:GO:0009555
GO:GO:0003676 EMBL:AL132954 GO:GO:0048481 GO:GO:0009846
eggNOG:NOG247734 KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA
IPI:IPI00517026 PIR:T47659 RefSeq:NP_567015.1 RefSeq:NP_567016.1
UniGene:At.28226 UniGene:At.72270 ProteinModelPortal:Q9LD60
SMR:Q9LD60 STRING:Q9LD60 PaxDb:Q9LD60 PRIDE:Q9LD60
EnsemblPlants:AT3G55200.1 EnsemblPlants:AT3G55220.1 GeneID:824686
GeneID:824688 KEGG:ath:AT3G55200 KEGG:ath:AT3G55220
KEGG:dosa:Os02t0137400-01 TAIR:At3g55200 TAIR:At3g55220
InParanoid:Q9LD60 PhylomeDB:Q9LD60 ProtClustDB:CLSN2689171
ArrayExpress:Q9LD60 Genevestigator:Q9LD60 Uniprot:Q9LD60
Length = 1214
Score = 345 (126.5 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 116/431 (26%), Positives = 202/431 (46%)
Query: 17 QPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINE 76
QP + V + ++ +L P++D V+++ + Q+ + G SLRI+R G+ I E
Sbjct: 386 QPRRLKNLVRI-DQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITE 444
Query: 77 QASVELQGI-KGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQ 135
A +L G +W+++ + D FD ++VVSF + T L +++ GF T
Sbjct: 445 MAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNAT--LVLSIGEQVEEVNDSGFLDTTP 502
Query: 136 TLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGH 195
+L + L+QV +R + R NEW++P S+ N QV++A GG
Sbjct: 503 SLAVSLIGDDSLMQVHPNGIRHIREDGRI--NEWRTPGKRSIVKVGYNRLQVVIALSGGE 560
Query: 196 LVYLEIG-DGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PD 253
L+Y E G L EV+ ++ +++CLDI P+ E S+ AVG + D +VRI SL PD
Sbjct: 561 LIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSY-DNTVRILSLDPD 619
Query: 254 --LNLITKEHLGGEIIPRSVLLCAFE-------GIS-----YLLCALGDGHLLNFLLNMK 299
L +++ + + P S+L + G +L L +G L +++M
Sbjct: 620 DCLQILSVQSVSSA--PESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMV 677
Query: 300 TGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHM 359
TG+L+D + LG +P L + S + + + S RP + Y + ++ + +
Sbjct: 678 TGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFA 737
Query: 360 CPFNSAAFPDSLAIAKEGELTIGTIDDI-QKLHIRSIPLGEHPRR-ICHQEQSRTFAICS 417
PF+S + + L I ID + + + +PL PR+ + H ++ I S
Sbjct: 738 APFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIES 797
Query: 418 LKNQSCAEESE 428
+ AEE E
Sbjct: 798 DQGAFTAEERE 808
Score = 241 (89.9 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 100/369 (27%), Positives = 172/369 (46%)
Query: 426 ESE--MHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSD-DSNVYYCVGTAYVL---P 479
ESE + +R+LD +T L E S+ + +F D + VGT + P
Sbjct: 855 ESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWP 914
Query: 480 EENEPTKGRILVF-IVEDGK-LQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLR 537
++N G I ++ VEDGK L+L+ + + +G +L F G+LLA I ++LY
Sbjct: 915 KKNL-VAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLY----- 968
Query: 538 DDGTRELQSECGHHGHILALY-VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNA 596
D G + L +C + + +QT D I VGD+ +S Y+ +E + A D
Sbjct: 969 DLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVP 1028
Query: 597 NWMSAVEILDDDIYLGAENNFNLFTVRK----NSEGATDEERGRLE-----VVGEYHLGE 647
W++A +D D GA+ N++ VR + E D G+++ + G + +
Sbjct: 1029 RWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVD 1088
Query: 648 FVNRFRHGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVI-ASLPHEQYLFLEKLQTNLRK 704
+ +F G +V L + + G ++++GTV G IG + A + F L+ ++R+
Sbjct: 1089 EIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQ 1148
Query: 705 VIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESF----LDLSRTRMDEISKTMNVSV 760
+ G +H +RS K+ +DGDL E F +DL R DE+ +T
Sbjct: 1149 EYPPLCGRDHMAYRS-----AYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTP---- 1199
Query: 761 EELCKRVEE 769
E+ K++E+
Sbjct: 1200 AEILKKLED 1208
Score = 41 (19.5 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 23/79 (29%), Positives = 35/79 (44%)
Query: 212 AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISV----RIFSLPDLN----LITKEHLG 263
A +E + S D +P G+ S +Q D+ + R +S P N L+T G
Sbjct: 182 AAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVP--G 239
Query: 264 GEIIPRSVLLCAFEGISYL 282
G P VL+CA + Y+
Sbjct: 240 GADGPSGVLVCAENFVIYM 258
>TAIR|locus:2100646 [details] [associations]
symbol:SAP130b "spliceosome-associated protein 130 b"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS] [GO:0005829 "cytosol" evidence=RCA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0009555 "pollen
development" evidence=IMP] [GO:0009846 "pollen germination"
evidence=IMP] [GO:0048481 "ovule development" evidence=IMP]
InterPro:IPR001680 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 SMART:SM00320 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 EMBL:CP002686 Gene3D:2.130.10.10 GO:GO:0009555
GO:GO:0003676 EMBL:AL132954 GO:GO:0048481 GO:GO:0009846
eggNOG:NOG247734 KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA
IPI:IPI00517026 PIR:T47659 RefSeq:NP_567015.1 RefSeq:NP_567016.1
UniGene:At.28226 UniGene:At.72270 ProteinModelPortal:Q9LD60
SMR:Q9LD60 STRING:Q9LD60 PaxDb:Q9LD60 PRIDE:Q9LD60
EnsemblPlants:AT3G55200.1 EnsemblPlants:AT3G55220.1 GeneID:824686
GeneID:824688 KEGG:ath:AT3G55200 KEGG:ath:AT3G55220
KEGG:dosa:Os02t0137400-01 TAIR:At3g55200 TAIR:At3g55220
InParanoid:Q9LD60 PhylomeDB:Q9LD60 ProtClustDB:CLSN2689171
ArrayExpress:Q9LD60 Genevestigator:Q9LD60 Uniprot:Q9LD60
Length = 1214
Score = 345 (126.5 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 116/431 (26%), Positives = 202/431 (46%)
Query: 17 QPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINE 76
QP + V + ++ +L P++D V+++ + Q+ + G SLRI+R G+ I E
Sbjct: 386 QPRRLKNLVRI-DQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITE 444
Query: 77 QASVELQGI-KGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQ 135
A +L G +W+++ + D FD ++VVSF + T L +++ GF T
Sbjct: 445 MAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNAT--LVLSIGEQVEEVNDSGFLDTTP 502
Query: 136 TLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGH 195
+L + L+QV +R + R NEW++P S+ N QV++A GG
Sbjct: 503 SLAVSLIGDDSLMQVHPNGIRHIREDGRI--NEWRTPGKRSIVKVGYNRLQVVIALSGGE 560
Query: 196 LVYLEIG-DGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PD 253
L+Y E G L EV+ ++ +++CLDI P+ E S+ AVG + D +VRI SL PD
Sbjct: 561 LIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSY-DNTVRILSLDPD 619
Query: 254 --LNLITKEHLGGEIIPRSVLLCAFE-------GIS-----YLLCALGDGHLLNFLLNMK 299
L +++ + + P S+L + G +L L +G L +++M
Sbjct: 620 DCLQILSVQSVSSA--PESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMV 677
Query: 300 TGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHM 359
TG+L+D + LG +P L + S + + + S RP + Y + ++ + +
Sbjct: 678 TGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFA 737
Query: 360 CPFNSAAFPDSLAIAKEGELTIGTIDDI-QKLHIRSIPLGEHPRR-ICHQEQSRTFAICS 417
PF+S + + L I ID + + + +PL PR+ + H ++ I S
Sbjct: 738 APFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIES 797
Query: 418 LKNQSCAEESE 428
+ AEE E
Sbjct: 798 DQGAFTAEERE 808
Score = 241 (89.9 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 100/369 (27%), Positives = 172/369 (46%)
Query: 426 ESE--MHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSD-DSNVYYCVGTAYVL---P 479
ESE + +R+LD +T L E S+ + +F D + VGT + P
Sbjct: 855 ESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWP 914
Query: 480 EENEPTKGRILVF-IVEDGK-LQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLR 537
++N G I ++ VEDGK L+L+ + + +G +L F G+LLA I ++LY
Sbjct: 915 KKNL-VAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLY----- 968
Query: 538 DDGTRELQSECGHHGHILALY-VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNA 596
D G + L +C + + +QT D I VGD+ +S Y+ +E + A D
Sbjct: 969 DLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVP 1028
Query: 597 NWMSAVEILDDDIYLGAENNFNLFTVRK----NSEGATDEERGRLE-----VVGEYHLGE 647
W++A +D D GA+ N++ VR + E D G+++ + G + +
Sbjct: 1029 RWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVD 1088
Query: 648 FVNRFRHGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVI-ASLPHEQYLFLEKLQTNLRK 704
+ +F G +V L + + G ++++GTV G IG + A + F L+ ++R+
Sbjct: 1089 EIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQ 1148
Query: 705 VIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESF----LDLSRTRMDEISKTMNVSV 760
+ G +H +RS K+ +DGDL E F +DL R DE+ +T
Sbjct: 1149 EYPPLCGRDHMAYRS-----AYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTP---- 1199
Query: 761 EELCKRVEE 769
E+ K++E+
Sbjct: 1200 AEILKKLED 1208
Score = 41 (19.5 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 23/79 (29%), Positives = 35/79 (44%)
Query: 212 AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISV----RIFSLPDLN----LITKEHLG 263
A +E + S D +P G+ S +Q D+ + R +S P N L+T G
Sbjct: 182 AAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVP--G 239
Query: 264 GEIIPRSVLLCAFEGISYL 282
G P VL+CA + Y+
Sbjct: 240 GADGPSGVLVCAENFVIYM 258
>UNIPROTKB|E9PT66 [details] [associations]
symbol:Sf3b3 "Protein Sf3b3" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
RGD:1311636 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 IPI:IPI00958853
Ensembl:ENSRNOT00000023854 ArrayExpress:E9PT66 Uniprot:E9PT66
Length = 920
Score = 337 (123.7 bits), Expect = 4.7e-47, Sum P(2) = 4.7e-47
Identities = 112/408 (27%), Positives = 188/408 (46%)
Query: 33 NLGPIVDFC-VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWS 90
+L PI+ FC + DL + Q+ G SLR++R+G+ ++E A EL G +W+
Sbjct: 106 SLSPIL-FCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWT 164
Query: 91 LRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQV 150
+R +D FD +++VSF++ T L +++ GF T TL C + LVQV
Sbjct: 165 VRRHIEDEFDAYIIVSFVNAT--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQV 222
Query: 151 TSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE- 208
+R + + R NEWK+P ++ N QV++A GG LVY E+ G L E
Sbjct: 223 YPDGIRHIRADKRV--NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEY 280
Query: 209 VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PD--LNLITKEHLGGE 265
+ ++ ++ C+ + + S+ AVG+ D +VRI SL P L ++ + L +
Sbjct: 281 TERKEMSADVVCMSLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQALPAQ 339
Query: 266 IIPRSVLLCAFE----------------GISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
P S LC E G YL L +G LL +L+ TG+L+D +
Sbjct: 340 --PES--LCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTR 395
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
LG++P+ L + V A S R + YS + + ++ + + F S P+
Sbjct: 396 YLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPE 455
Query: 370 SLAIAKEGELTIGTIDDIQKLHIR-SIPLGEHPRR-ICHQEQSRTFAI 415
+ L I ++ + + + + PL PR+ + H E + I
Sbjct: 456 GIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIII 503
Score = 241 (89.9 bits), Expect = 4.7e-47, Sum P(2) = 4.7e-47
Identities = 87/363 (23%), Positives = 168/363 (46%)
Query: 432 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC-VGTAY-VLPEENEPTKGRI 489
+R+++ + L+ E S+ C FS+ +Y VG A ++ G +
Sbjct: 569 IRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILSPRSVAGGFV 628
Query: 490 LVF-IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSE 547
+ +V +G KL+ + + + ++ F G++L + + +++Y D G ++L +
Sbjct: 629 YTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLRK 683
Query: 548 CGHHGHILALYV---QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEI 604
C + HI A Y+ QT G ++V D+ +S + YK E + A D W++ +
Sbjct: 684 C-ENKHI-ANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASL 741
Query: 605 LDDDIYLGAENNFNLFTVR--KNSEGATDEE---------RGRLEVVGEYHLGEFVNRFR 653
LD D GA+ N+ VR N+ DE+ RG L G E + +
Sbjct: 742 LDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLN--GASQKAEVIMNYH 799
Query: 654 HGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVIASLP-HEQYLFLEKLQTNLRKVIKGVG 710
G V+ L + + G ++++ T++G IG++ HE + F + ++ +LR +
Sbjct: 800 VGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLC 859
Query: 711 GLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 770
G +H +RS+ KN +DGDL E F + + +S+ ++ + E+ K++E++
Sbjct: 860 GRDHLSFRSYY-----FPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDI 914
Query: 771 -TR 772
TR
Sbjct: 915 RTR 917
Score = 38 (18.4 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 414 AICSLKNQSCAEESEM--HFVRLL-----DDQTFEFISTYPL---DTF 451
A+C LK SE H++ + DD+ EF S PL DTF
Sbjct: 41 AMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTF 88
Score = 38 (18.4 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 397 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 452
L E+ R +E S SL N E+ L D T IS P D +
Sbjct: 277 LNEYTER---KEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQ 329
>UNIPROTKB|E2RR33 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 KO:K12830 OMA:FDTIPVA
CTD:23450 EMBL:AAEX03004077 RefSeq:XP_536791.2
Ensembl:ENSCAFT00000032086 GeneID:479659 KEGG:cfa:479659
Uniprot:E2RR33
Length = 1217
Score = 337 (123.7 bits), Expect = 5.7e-46, Sum P(3) = 5.7e-46
Identities = 112/408 (27%), Positives = 188/408 (46%)
Query: 33 NLGPIVDFC-VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWS 90
+L PI+ FC + DL + Q+ G SLR++R+G+ ++E A EL G +W+
Sbjct: 403 SLSPIL-FCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWT 461
Query: 91 LRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQV 150
+R +D FD +++VSF++ T L +++ GF T TL C + LVQV
Sbjct: 462 VRRHIEDEFDAYIIVSFVNAT--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQV 519
Query: 151 TSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE- 208
+R + + R NEWK+P ++ N QV++A GG LVY E+ G L E
Sbjct: 520 YPDGIRHIRADKRV--NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEY 577
Query: 209 VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PD--LNLITKEHLGGE 265
+ ++ ++ C+ + + S+ AVG+ D +VRI SL P L ++ + L +
Sbjct: 578 TERKEMSADVVCMSLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQALPAQ 636
Query: 266 IIPRSVLLCAFE----------------GISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
P S LC E G YL L +G LL +L+ TG+L+D +
Sbjct: 637 --PES--LCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTR 692
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
LG++P+ L + V A S R + YS + + ++ + + F S P+
Sbjct: 693 YLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPE 752
Query: 370 SLAIAKEGELTIGTIDDIQKLHIR-SIPLGEHPRR-ICHQEQSRTFAI 415
+ L I ++ + + + + PL PR+ + H E + I
Sbjct: 753 GIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIII 800
Score = 242 (90.2 bits), Expect = 5.7e-46, Sum P(3) = 5.7e-46
Identities = 87/363 (23%), Positives = 169/363 (46%)
Query: 432 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC-VGTAY-VLPEENEPTKGRI 489
+R+++ + L+ E S+ C FS+ + +Y VG A ++ G +
Sbjct: 866 IRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGDDWYVLVGVAKDLILNPRSVAGGFV 925
Query: 490 LVF-IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSE 547
+ +V +G KL+ + + + ++ F G++L + + +++Y D G ++L +
Sbjct: 926 YTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLRK 980
Query: 548 CGHHGHILALYV---QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEI 604
C + HI A Y+ QT G ++V D+ +S + YK E + A D W++ +
Sbjct: 981 C-ENKHI-ANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASL 1038
Query: 605 LDDDIYLGAENNFNLFTVR--KNSEGATDEE---------RGRLEVVGEYHLGEFVNRFR 653
LD D GA+ N+ VR N+ DE+ RG L G E + +
Sbjct: 1039 LDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLN--GASQKAEVIMNYH 1096
Query: 654 HGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVIASLP-HEQYLFLEKLQTNLRKVIKGVG 710
G V+ L + + G ++++ T++G IG++ HE + F + ++ +LR +
Sbjct: 1097 VGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLC 1156
Query: 711 GLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 770
G +H +RS+ KN +DGDL E F + + +S+ ++ + E+ K++E++
Sbjct: 1157 GRDHLSFRSYY-----FPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDI 1211
Query: 771 -TR 772
TR
Sbjct: 1212 RTR 1214
Score = 47 (21.6 bits), Expect = 4.1e-15, Sum P(3) = 4.1e-15
Identities = 34/111 (30%), Positives = 45/111 (40%)
Query: 180 ATANASQVLLATGGGHLVYLEIGDGILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAV 238
A S L A LVY +G + E A LE + D +P GE + +Q
Sbjct: 150 ARLTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLT 209
Query: 239 GMWTDIS----VRIFSLP---DLN-LITKEHLGGEIIPRSVLLCAFEGISY 281
D+ VR +S P N LIT GG P VL+C+ I+Y
Sbjct: 210 FYELDLGLNHVVRKYSEPLEEHGNFLITVP--GGSDGPSGVLICSENYITY 258
Score = 40 (19.1 bits), Expect = 5.7e-46, Sum P(3) = 5.7e-46
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 31 YVNLGPIVDF-CVV-----DLERQGQGQVVTCSGAYKDGSL 65
Y N G D C + DL+ +G + CS +K S+
Sbjct: 258 YKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSM 298
Score = 38 (18.4 bits), Expect = 4.1e-15, Sum P(3) = 4.1e-15
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 414 AICSLKNQSCAEESEM--HFVRLL-----DDQTFEFISTYPL---DTF 451
A+C LK SE H++ + DD+ EF S PL DTF
Sbjct: 338 AMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTF 385
Score = 38 (18.4 bits), Expect = 4.1e-15, Sum P(3) = 4.1e-15
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 397 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 452
L E+ R +E S SL N E+ L D T IS P D +
Sbjct: 574 LNEYTER---KEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQ 626
>UNIPROTKB|A0JN52 [details] [associations]
symbol:SF3B3 "Splicing factor 3B subunit 3" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR004871 Pfam:PF03178 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 GO:GO:0071013 eggNOG:NOG247734
GeneTree:ENSGT00530000063396 GO:GO:0005689 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA EMBL:BC126518 IPI:IPI00690059
RefSeq:NP_001071319.1 UniGene:Bt.7895 ProteinModelPortal:A0JN52
STRING:A0JN52 PRIDE:A0JN52 Ensembl:ENSBTAT00000014050 GeneID:504962
KEGG:bta:504962 CTD:23450 HOVERGEN:HBG093942 InParanoid:A0JN52
OrthoDB:EOG4RV2QJ BioCyc:CATTLE:504962-MONOMER BindingDB:A0JN52
NextBio:20866909 ArrayExpress:A0JN52 Uniprot:A0JN52
Length = 1217
Score = 337 (123.7 bits), Expect = 7.3e-46, Sum P(3) = 7.3e-46
Identities = 112/408 (27%), Positives = 188/408 (46%)
Query: 33 NLGPIVDFC-VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWS 90
+L PI+ FC + DL + Q+ G SLR++R+G+ ++E A EL G +W+
Sbjct: 403 SLSPIL-FCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWT 461
Query: 91 LRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQV 150
+R +D FD +++VSF++ T L +++ GF T TL C + LVQV
Sbjct: 462 VRRHIEDEFDAYIIVSFVNAT--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQV 519
Query: 151 TSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE- 208
+R + + R NEWK+P ++ N QV++A GG LVY E+ G L E
Sbjct: 520 YPDGIRHIRADKRV--NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEY 577
Query: 209 VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PD--LNLITKEHLGGE 265
+ ++ ++ C+ + + S+ AVG+ D +VRI SL P L ++ + L +
Sbjct: 578 TERKEMSADVVCMSLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQALPAQ 636
Query: 266 IIPRSVLLCAFE----------------GISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
P S LC E G YL L +G LL +L+ TG+L+D +
Sbjct: 637 --PES--LCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTR 692
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
LG++P+ L + V A S R + YS + + ++ + + F S P+
Sbjct: 693 YLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPE 752
Query: 370 SLAIAKEGELTIGTIDDIQKLHIR-SIPLGEHPRR-ICHQEQSRTFAI 415
+ L I ++ + + + + PL PR+ + H E + I
Sbjct: 753 GIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIII 800
Score = 241 (89.9 bits), Expect = 7.3e-46, Sum P(3) = 7.3e-46
Identities = 87/363 (23%), Positives = 168/363 (46%)
Query: 432 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC-VGTAY-VLPEENEPTKGRI 489
+R+++ + L+ E S+ C FS+ +Y VG A ++ G +
Sbjct: 866 IRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILNPRSVAGGFV 925
Query: 490 LVF-IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSE 547
+ +V +G KL+ + + + ++ F G++L + + +++Y D G ++L +
Sbjct: 926 YTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLRK 980
Query: 548 CGHHGHILALYV---QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEI 604
C + HI A Y+ QT G ++V D+ +S + YK E + A D W++ +
Sbjct: 981 C-ENKHI-ANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASL 1038
Query: 605 LDDDIYLGAENNFNLFTVR--KNSEGATDEE---------RGRLEVVGEYHLGEFVNRFR 653
LD D GA+ N+ VR N+ DE+ RG L G E + +
Sbjct: 1039 LDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLN--GASQKAEVIMNYH 1096
Query: 654 HGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVIASLP-HEQYLFLEKLQTNLRKVIKGVG 710
G V+ L + + G ++++ T++G IG++ HE + F + ++ +LR +
Sbjct: 1097 VGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLC 1156
Query: 711 GLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 770
G +H +RS+ KN +DGDL E F + + +S+ ++ + E+ K++E++
Sbjct: 1157 GRDHLSFRSYY-----FPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDI 1211
Query: 771 -TR 772
TR
Sbjct: 1212 RTR 1214
Score = 47 (21.6 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 34/111 (30%), Positives = 45/111 (40%)
Query: 180 ATANASQVLLATGGGHLVYLEIGDGILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAV 238
A S L A LVY +G + E A LE + D +P GE + +Q
Sbjct: 150 ARLTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLT 209
Query: 239 GMWTDIS----VRIFSLP---DLN-LITKEHLGGEIIPRSVLLCAFEGISY 281
D+ VR +S P N LIT GG P VL+C+ I+Y
Sbjct: 210 FYELDLGLNHVVRKYSEPLEEHGNFLITVP--GGSDGPSGVLICSENYITY 258
Score = 40 (19.1 bits), Expect = 7.3e-46, Sum P(3) = 7.3e-46
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 31 YVNLGPIVDF-CVV-----DLERQGQGQVVTCSGAYKDGSL 65
Y N G D C + DL+ +G + CS +K S+
Sbjct: 258 YKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSM 298
Score = 38 (18.4 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 414 AICSLKNQSCAEESEM--HFVRLL-----DDQTFEFISTYPL---DTF 451
A+C LK SE H++ + DD+ EF S PL DTF
Sbjct: 338 AMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTF 385
Score = 38 (18.4 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 397 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 452
L E+ R +E S SL N E+ L D T IS P D +
Sbjct: 574 LNEYTER---KEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQ 626
>UNIPROTKB|Q15393 [details] [associations]
symbol:SF3B3 "Splicing factor 3B subunit 3" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0006461 "protein
complex assembly" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR004871 Pfam:PF03178 GO:GO:0005654 GO:GO:0006461
Reactome:REACT_1675 GO:GO:0003676 GO:GO:0000398 GO:GO:0071013
GO:GO:0030532 eggNOG:NOG247734 GO:GO:0005689 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA CTD:23450 HOVERGEN:HBG093942
OrthoDB:EOG4RV2QJ EMBL:AJ001443 EMBL:D87686 EMBL:D13642
EMBL:BC000463 EMBL:BC003146 EMBL:BC009780 EMBL:BC068974
EMBL:AL110251 IPI:IPI00179138 IPI:IPI00300371 IPI:IPI00828110
PIR:T14779 RefSeq:NP_036558.3 UniGene:Hs.514435
ProteinModelPortal:Q15393 DIP:DIP-28152N IntAct:Q15393
MINT:MINT-1402891 STRING:Q15393 PhosphoSite:Q15393 DMDM:116242787
PaxDb:Q15393 PeptideAtlas:Q15393 PRIDE:Q15393
Ensembl:ENST00000302516 GeneID:23450 KEGG:hsa:23450 UCSC:uc002ezf.3
GeneCards:GC16P070557 HGNC:HGNC:10770 HPA:HPA042986 MIM:605592
neXtProt:NX_Q15393 PharmGKB:PA35688 InParanoid:Q15393
PhylomeDB:Q15393 BindingDB:Q15393 ChEMBL:CHEMBL1250378
GenomeRNAi:23450 NextBio:45731 ArrayExpress:Q15393 Bgee:Q15393
CleanEx:HS_SAP130 CleanEx:HS_SF3B3 Genevestigator:Q15393
GermOnline:ENSG00000189091 Uniprot:Q15393
Length = 1217
Score = 337 (123.7 bits), Expect = 7.3e-46, Sum P(3) = 7.3e-46
Identities = 112/408 (27%), Positives = 188/408 (46%)
Query: 33 NLGPIVDFC-VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWS 90
+L PI+ FC + DL + Q+ G SLR++R+G+ ++E A EL G +W+
Sbjct: 403 SLSPIL-FCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWT 461
Query: 91 LRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQV 150
+R +D FD +++VSF++ T L +++ GF T TL C + LVQV
Sbjct: 462 VRRHIEDEFDAYIIVSFVNAT--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQV 519
Query: 151 TSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE- 208
+R + + R NEWK+P ++ N QV++A GG LVY E+ G L E
Sbjct: 520 YPDGIRHIRADKRV--NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEY 577
Query: 209 VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PD--LNLITKEHLGGE 265
+ ++ ++ C+ + + S+ AVG+ D +VRI SL P L ++ + L +
Sbjct: 578 TERKEMSADVVCMSLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQALPAQ 636
Query: 266 IIPRSVLLCAFE----------------GISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
P S LC E G YL L +G LL +L+ TG+L+D +
Sbjct: 637 --PES--LCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTR 692
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
LG++P+ L + V A S R + YS + + ++ + + F S P+
Sbjct: 693 YLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPE 752
Query: 370 SLAIAKEGELTIGTIDDIQKLHIR-SIPLGEHPRR-ICHQEQSRTFAI 415
+ L I ++ + + + + PL PR+ + H E + I
Sbjct: 753 GIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIII 800
Score = 241 (89.9 bits), Expect = 7.3e-46, Sum P(3) = 7.3e-46
Identities = 87/363 (23%), Positives = 168/363 (46%)
Query: 432 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC-VGTAY-VLPEENEPTKGRI 489
+R+++ + L+ E S+ C FS+ +Y VG A ++ G +
Sbjct: 866 IRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILNPRSVAGGFV 925
Query: 490 LVF-IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSE 547
+ +V +G KL+ + + + ++ F G++L + + +++Y D G ++L +
Sbjct: 926 YTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLRK 980
Query: 548 CGHHGHILALYV---QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEI 604
C + HI A Y+ QT G ++V D+ +S + YK E + A D W++ +
Sbjct: 981 C-ENKHI-ANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASL 1038
Query: 605 LDDDIYLGAENNFNLFTVR--KNSEGATDEE---------RGRLEVVGEYHLGEFVNRFR 653
LD D GA+ N+ VR N+ DE+ RG L G E + +
Sbjct: 1039 LDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLN--GASQKAEVIMNYH 1096
Query: 654 HGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVIASLP-HEQYLFLEKLQTNLRKVIKGVG 710
G V+ L + + G ++++ T++G IG++ HE + F + ++ +LR +
Sbjct: 1097 VGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLC 1156
Query: 711 GLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 770
G +H +RS+ KN +DGDL E F + + +S+ ++ + E+ K++E++
Sbjct: 1157 GRDHLSFRSYY-----FPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDI 1211
Query: 771 -TR 772
TR
Sbjct: 1212 RTR 1214
Score = 47 (21.6 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 34/111 (30%), Positives = 45/111 (40%)
Query: 180 ATANASQVLLATGGGHLVYLEIGDGILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAV 238
A S L A LVY +G + E A LE + D +P GE + +Q
Sbjct: 150 ARLTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLT 209
Query: 239 GMWTDIS----VRIFSLP---DLN-LITKEHLGGEIIPRSVLLCAFEGISY 281
D+ VR +S P N LIT GG P VL+C+ I+Y
Sbjct: 210 FYELDLGLNHVVRKYSEPLEEHGNFLITVP--GGSDGPSGVLICSENYITY 258
Score = 40 (19.1 bits), Expect = 7.3e-46, Sum P(3) = 7.3e-46
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 31 YVNLGPIVDF-CVV-----DLERQGQGQVVTCSGAYKDGSL 65
Y N G D C + DL+ +G + CS +K S+
Sbjct: 258 YKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSM 298
Score = 38 (18.4 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 414 AICSLKNQSCAEESEM--HFVRLL-----DDQTFEFISTYPL---DTF 451
A+C LK SE H++ + DD+ EF S PL DTF
Sbjct: 338 AMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTF 385
Score = 38 (18.4 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 397 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 452
L E+ R +E S SL N E+ L D T IS P D +
Sbjct: 574 LNEYTER---KEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQ 626
>MGI|MGI:1289341 [details] [associations]
symbol:Sf3b3 "splicing factor 3b, subunit 3" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR004871 Pfam:PF03178
MGI:MGI:1289341 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0071013 eggNOG:NOG247734 GeneTree:ENSGT00530000063396
HSSP:Q16531 GO:GO:0005689 KO:K12830 HOGENOM:HOG000216677
OMA:FDTIPVA CTD:23450 HOVERGEN:HBG093942 OrthoDB:EOG4RV2QJ
EMBL:AK085705 EMBL:AK088268 EMBL:AK129035 EMBL:AK147914
EMBL:BC011412 EMBL:BC031197 EMBL:BC042580 IPI:IPI00122011
IPI:IPI00625759 RefSeq:NP_598714.1 UniGene:Mm.236123
ProteinModelPortal:Q921M3 IntAct:Q921M3 STRING:Q921M3
PhosphoSite:Q921M3 PaxDb:Q921M3 PRIDE:Q921M3
Ensembl:ENSMUST00000042012 GeneID:101943 KEGG:mmu:101943
UCSC:uc009nlc.1 InParanoid:Q921M3 NextBio:355190 Bgee:Q921M3
CleanEx:MM_SF3B3 Genevestigator:Q921M3 Uniprot:Q921M3
Length = 1217
Score = 337 (123.7 bits), Expect = 7.3e-46, Sum P(3) = 7.3e-46
Identities = 112/408 (27%), Positives = 188/408 (46%)
Query: 33 NLGPIVDFC-VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWS 90
+L PI+ FC + DL + Q+ G SLR++R+G+ ++E A EL G +W+
Sbjct: 403 SLSPIL-FCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWT 461
Query: 91 LRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQV 150
+R +D FD +++VSF++ T L +++ GF T TL C + LVQV
Sbjct: 462 VRRHIEDEFDAYIIVSFVNAT--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQV 519
Query: 151 TSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE- 208
+R + + R NEWK+P ++ N QV++A GG LVY E+ G L E
Sbjct: 520 YPDGIRHIRADKRV--NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEY 577
Query: 209 VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PD--LNLITKEHLGGE 265
+ ++ ++ C+ + + S+ AVG+ D +VRI SL P L ++ + L +
Sbjct: 578 TERKEMSADVVCMSLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQALPAQ 636
Query: 266 IIPRSVLLCAFE----------------GISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
P S LC E G YL L +G LL +L+ TG+L+D +
Sbjct: 637 --PES--LCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTR 692
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
LG++P+ L + V A S R + YS + + ++ + + F S P+
Sbjct: 693 YLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPE 752
Query: 370 SLAIAKEGELTIGTIDDIQKLHIR-SIPLGEHPRR-ICHQEQSRTFAI 415
+ L I ++ + + + + PL PR+ + H E + I
Sbjct: 753 GIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIII 800
Score = 241 (89.9 bits), Expect = 7.3e-46, Sum P(3) = 7.3e-46
Identities = 87/363 (23%), Positives = 168/363 (46%)
Query: 432 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC-VGTAY-VLPEENEPTKGRI 489
+R+++ + L+ E S+ C FS+ +Y VG A ++ G +
Sbjct: 866 IRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILSPRSVAGGFV 925
Query: 490 LVF-IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSE 547
+ +V +G KL+ + + + ++ F G++L + + +++Y D G ++L +
Sbjct: 926 YTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLRK 980
Query: 548 CGHHGHILALYV---QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEI 604
C + HI A Y+ QT G ++V D+ +S + YK E + A D W++ +
Sbjct: 981 C-ENKHI-ANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASL 1038
Query: 605 LDDDIYLGAENNFNLFTVR--KNSEGATDEE---------RGRLEVVGEYHLGEFVNRFR 653
LD D GA+ N+ VR N+ DE+ RG L G E + +
Sbjct: 1039 LDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLN--GASQKAEVIMNYH 1096
Query: 654 HGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVIASLP-HEQYLFLEKLQTNLRKVIKGVG 710
G V+ L + + G ++++ T++G IG++ HE + F + ++ +LR +
Sbjct: 1097 VGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLC 1156
Query: 711 GLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 770
G +H +RS+ KN +DGDL E F + + +S+ ++ + E+ K++E++
Sbjct: 1157 GRDHLSFRSYY-----FPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDI 1211
Query: 771 -TR 772
TR
Sbjct: 1212 RTR 1214
Score = 47 (21.6 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 34/111 (30%), Positives = 45/111 (40%)
Query: 180 ATANASQVLLATGGGHLVYLEIGDGILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAV 238
A S L A LVY +G + E A LE + D +P GE + +Q
Sbjct: 150 ARLTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLT 209
Query: 239 GMWTDIS----VRIFSLP---DLN-LITKEHLGGEIIPRSVLLCAFEGISY 281
D+ VR +S P N LIT GG P VL+C+ I+Y
Sbjct: 210 FYELDLGLNHVVRKYSEPLEEHGNFLITVP--GGSDGPSGVLICSENYITY 258
Score = 40 (19.1 bits), Expect = 7.3e-46, Sum P(3) = 7.3e-46
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 31 YVNLGPIVDF-CVV-----DLERQGQGQVVTCSGAYKDGSL 65
Y N G D C + DL+ +G + CS +K S+
Sbjct: 258 YKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSM 298
Score = 38 (18.4 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 414 AICSLKNQSCAEESEM--HFVRLL-----DDQTFEFISTYPL---DTF 451
A+C LK SE H++ + DD+ EF S PL DTF
Sbjct: 338 AMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTF 385
Score = 38 (18.4 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 397 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 452
L E+ R +E S SL N E+ L D T IS P D +
Sbjct: 574 LNEYTER---KEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQ 626
>ASPGD|ASPL0000031473 [details] [associations]
symbol:AN5452 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380
Gene3D:2.130.10.10 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0007049 EMBL:BN001305 EMBL:AACD01000094 eggNOG:NOG247734
KO:K12830 RefSeq:XP_663056.1 STRING:Q5B1X8 GeneID:2871744
KEGG:ani:AN5452.2 HOGENOM:HOG000216677 OMA:FDTIPVA
OrthoDB:EOG4FR40R Uniprot:Q5B1X8
Length = 1209
Score = 343 (125.8 bits), Expect = 8.0e-46, Sum P(2) = 8.0e-46
Identities = 117/443 (26%), Positives = 193/443 (43%)
Query: 25 VEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQG 84
+ ++E +L P+VD VV++ Q+ T SG + R +++G+ ++E EL
Sbjct: 411 LNLVEAINSLNPLVDSKVVNISEDDAPQIFTVSGTGARSTFRTLKHGLEVSEIVESELPS 470
Query: 85 I-KGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAI 143
+ +W+ + + D FD ++V+SF + T L +++ GF S TL
Sbjct: 471 VPSAVWTTKLTRADEFDAYIVLSFANGT--LVLSIGETVEEVTDTGFLSSAPTLAVQQLG 528
Query: 144 YNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEI-G 202
+ L+Q+ +R + + R NEW +P S+ A N QV +A G +VY E+
Sbjct: 529 EDSLIQIHPRGIRHILADRRV--NEWPAPQHRSIVAAATNERQVAVALSSGEIVYFELDA 586
Query: 203 DGILTEV-KHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PDLNLITKE 260
DG L E + Q+ ++CL + + E S AVG D +VRI SL PD L K
Sbjct: 587 DGSLAEYDERRQMSGTVTCLSLGEVPEGRVRSSFLAVGC-DDSTVRILSLDPDTTLENKS 645
Query: 261 HLGGEIIPRSVLLCAFEGIS------YLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQ 314
P ++ + A S YL L G L L+ TGEL+D + LG++
Sbjct: 646 VQALTAAPSALNIIAMADSSSGGTTLYLHIGLHSGVYLRTALDEVTGELSDTRTRFLGSK 705
Query: 315 PITLRTFSSKNTTHVFAASDRPTVIYSSN--KKLLYSNVNLKEVSHMCPFNSAAFPDSLA 372
+ L S T V A S RP + YS K + + ++ + F+S + +
Sbjct: 706 AVKLFQVSVTGQTAVLALSSRPWLGYSDTQTKGFMLTPLDYVGLEWGWNFSSEQCVEGMV 765
Query: 373 IAKEGELTIGTIDDIQKLHIR-SIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHF 431
+ L I +I+ + ++ SIPL PR + F + N + +
Sbjct: 766 GIQGQNLRIFSIEKLDNNMLQQSIPLAYTPRHFIKHPEEPLFYVIEADNNVLSPATR--- 822
Query: 432 VRLLDDQTFEFISTYPLDTFEYG 454
RLL+D T L ++G
Sbjct: 823 ARLLEDSKARGGDTTVLPPEDFG 845
Score = 227 (85.0 bits), Expect = 8.0e-46, Sum P(2) = 8.0e-46
Identities = 91/351 (25%), Positives = 159/351 (45%)
Query: 443 ISTYPLDTFEYGCSILSCSF-SDDSNVYYCVGTAYVLPEENEPTK--GRILVF-IVEDGK 498
+ L+ E SI + F S D + VGTA + N P+ G I ++ EDGK
Sbjct: 869 VGAVELEENEAAVSIAAVPFTSQDDETFLVVGTAKDMTV-NPPSSAGGYIHIYRFQEDGK 927
Query: 499 -LQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILAL 557
L+ I + + + +L F G+LLA + +++Y D G ++L +C A+
Sbjct: 928 ELEFIHKTKVEEPPLALLGFQGRLLAGVGSVLRIY-----DLGMKQLLRKCQAAVAPKAI 982
Query: 558 Y-VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENN 616
+QT+G IVV D+ +S++ ++YK+++ + D A W +A ++D + G +
Sbjct: 983 VGLQTQGSRIVVSDVRESVTYVVYKYQDNVLIPFVDDSIARWTTAATMVDYETTAGGDKF 1042
Query: 617 FNLFTVR---KNSEGATDEERGRLEVVGEYHLGEFVNRFR---HGSLVMRLPDS------ 664
NL+ VR K SE A +E G + +L NR H +P S
Sbjct: 1043 GNLWLVRCPKKASEEADEEGSGAHLIHDRGYLQGTPNRLELMIH-VFTQDIPTSLHKTQL 1101
Query: 665 DVGQIPTVIFGTVNGVIGVIAS-LPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNE 723
G +++ G IG++ + E F + L+ L + G +H +RS+
Sbjct: 1102 VAGGRDILVWTGFQGTIGILVPFVSREDVDFFQSLEMQLASQCPPLAGRDHLIYRSYY-- 1159
Query: 724 KKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL-TRL 773
K +DGDL E + LS I+ ++ SV E+ +++ ++ TR+
Sbjct: 1160 ---APVKGVIDGDLCEQYFLLSNDTKMMIAAELDRSVREIERKISDMRTRV 1207
Score = 43 (20.2 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 263 GGEIIPRSVLLCAFEGISY 281
GG P VL+CA + I+Y
Sbjct: 246 GGADGPSGVLVCAEDNITY 264
>ZFIN|ZDB-GENE-040426-2901 [details] [associations]
symbol:sf3b3 "splicing factor 3b, subunit 3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 ZFIN:ZDB-GENE-040426-2901 GO:GO:0008380
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 eggNOG:NOG247734 GeneTree:ENSGT00530000063396
KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA CTD:23450
HOVERGEN:HBG093942 OrthoDB:EOG4RV2QJ EMBL:BX784024 EMBL:BC047171
IPI:IPI00508652 RefSeq:NP_998668.1 RefSeq:XP_002667683.2
UniGene:Dr.76176 STRING:Q1LVE8 PRIDE:Q1LVE8
Ensembl:ENSDART00000008310 Ensembl:ENSDART00000122831
Ensembl:ENSDART00000129666 Ensembl:ENSDART00000147743
GeneID:100334114 GeneID:406824 KEGG:dre:100334114 KEGG:dre:406824
InParanoid:Q1LVE8 NextBio:20818331 Bgee:Q1LVE8 Uniprot:Q1LVE8
Length = 1217
Score = 338 (124.0 bits), Expect = 7.8e-45, Sum P(3) = 7.8e-45
Identities = 106/411 (25%), Positives = 190/411 (46%)
Query: 27 VLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI- 85
+++ +L PI+ + DL + Q+ G +LR++R+G+ ++E A EL G
Sbjct: 397 LVDEQESLSPIMSCQIADLANEDTPQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNP 456
Query: 86 KGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYN 145
+W++R +D FD +++VSF++ T L +++ GF T TL C +
Sbjct: 457 NAVWTVRRHVEDEFDAYIIVSFVNAT--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGED 514
Query: 146 QLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DG 204
LVQV +R + + R NEWK+P ++ N QV++A GG LVY E+ G
Sbjct: 515 ALVQVYPDGIRHIRADKRV--NEWKTPGKKTIIRCAVNQRQVVIALTGGELVYFEMDPSG 572
Query: 205 ILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PD--LNLITKE 260
L E + ++ ++ C+ + + S+ AVG+ D +VRI SL P L ++ +
Sbjct: 573 QLNEYTERKEMSADVVCMSLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQ 631
Query: 261 HLGGEIIPRSVLLCAFEGIS--------------YLLCALGDGHLLNFLLNMKTGELTDR 306
L + P S+ + G+ YL L +G LL +L+ TG+L+D
Sbjct: 632 ALPAQ--PESLCIVEMGGVEKQDELGEKGTIGFLYLNIGLQNGVLLRTVLDPVTGDLSDT 689
Query: 307 KKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAA 366
+ LG++P+ L + V A S R + YS + + ++ + + + F S
Sbjct: 690 RTRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEYASGFASEQ 749
Query: 367 FPDSLAIAKEGELTIGTIDDIQKLHIR-SIPLGEHPRR-ICHQEQSRTFAI 415
P+ + L I ++ + + + + PL PR+ + H E + I
Sbjct: 750 CPEGIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPETNNLILI 800
Score = 230 (86.0 bits), Expect = 7.8e-45, Sum P(3) = 7.8e-45
Identities = 85/361 (23%), Positives = 164/361 (45%)
Query: 432 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC-VGTAY-VLPEENEPTKGRI 489
VRL++ + L+ E S+ C F + + +Y VG A ++ G I
Sbjct: 866 VRLINPIQGNTLDLVQLEQNEAAFSVAICRFLNGGDDWYVLVGVARDMILNPRSVGGGYI 925
Query: 490 LVF-IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSE 547
+ IV G KL+ + + + ++ F G++L + + +++Y D G ++L +
Sbjct: 926 YTYRIVGGGDKLEFLHKTPVEDVPLAIAPFQGRVLVGVGKLLRIY-----DLGKKKLLRK 980
Query: 548 CGH-HGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD 606
C + H L + T G ++V D+ +S+ + Y+ E + A D W++ +LD
Sbjct: 981 CENKHVPNLVTGIHTIGQRVIVSDVQESLFWVRYRRNENQLIIFADDTYPRWITTACLLD 1040
Query: 607 DDIYLGAENNFNLFTVR--KNSEGATDEE---------RGRLEVVGEYHLGEFVNRFRHG 655
D A+ N+ VR N+ DE+ RG L G E + + G
Sbjct: 1041 YDTMASADKFGNICVVRLPPNTSDDVDEDPTGNKALWDRGLLN--GASQKAEIIINYHIG 1098
Query: 656 SLVMRLPDSDV--GQIPTVIFGTVNGVIGVIASLP-HEQYLFLEKLQTNLRKVIKGVGGL 712
V+ L + + G ++++ T++G IG++ HE + F + L+ ++R + G
Sbjct: 1099 ETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHLEMHMRSEFPPLCGR 1158
Query: 713 NHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL-T 771
+H +RS+ KN +DGDL E F + + +S+ ++ + E+ K++E++ T
Sbjct: 1159 DHLSFRSYY-----FPVKNVIDGDLCEQFNSMDPHKQKSVSEELDRTPPEVSKKLEDIRT 1213
Query: 772 R 772
R
Sbjct: 1214 R 1214
Score = 44 (20.5 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 33/111 (29%), Positives = 45/111 (40%)
Query: 180 ATANASQVLLATGGGHLVYLEIGDGILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAV 238
A S L A LVY +G + E A LE + D +P GE + +Q
Sbjct: 150 ARLTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLT 209
Query: 239 GMWTDIS----VRIFS--LPDLN--LITKEHLGGEIIPRSVLLCAFEGISY 281
D+ VR +S L + LIT GG P VL+C+ I+Y
Sbjct: 210 FYELDLGLNHVVRKYSEALEEHGNFLITVP--GGSDGPSGVLICSENYITY 258
Score = 40 (19.1 bits), Expect = 7.8e-45, Sum P(3) = 7.8e-45
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 31 YVNLGPIVDF-CVV-----DLERQGQGQVVTCSGAYKDGSL 65
Y N G D C + DL+ +G + CS +K S+
Sbjct: 258 YKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSM 298
Score = 39 (18.8 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 414 AICSLKNQSCAEESEM--HFVRLL-----DDQTFEFISTYPL---DTF 451
A+C LK SE H++ + DD+ EF S PL DTF
Sbjct: 338 AMCVLKTGFLFVSSEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTF 385
Score = 38 (18.4 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 397 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 452
L E+ R +E S SL N E+ L D T IS P D +
Sbjct: 574 LNEYTER---KEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQ 626
>RGD|1311636 [details] [associations]
symbol:Sf3b3 "splicing factor 3b, subunit 3" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR004871
Pfam:PF03178 RGD:1311636 GO:GO:0005634 GO:GO:0003676
IPI:IPI00563335 PRIDE:F1LSZ9 Ensembl:ENSRNOT00000044193
UCSC:RGD:1311636 ArrayExpress:F1LSZ9 Uniprot:F1LSZ9
Length = 902
Score = 337 (123.7 bits), Expect = 1.4e-44, Sum P(3) = 1.4e-44
Identities = 112/408 (27%), Positives = 188/408 (46%)
Query: 33 NLGPIVDFC-VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWS 90
+L PI+ FC + DL + Q+ G SLR++R+G+ ++E A EL G +W+
Sbjct: 183 SLSPIL-FCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWT 241
Query: 91 LRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQV 150
+R +D FD +++VSF++ T L +++ GF T TL C + LVQV
Sbjct: 242 VRRHIEDEFDAYIIVSFVNAT--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQV 299
Query: 151 TSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE- 208
+R + + R NEWK+P ++ N QV++A GG LVY E+ G L E
Sbjct: 300 YPDGIRHIRADKRV--NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEY 357
Query: 209 VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PD--LNLITKEHLGGE 265
+ ++ ++ C+ + + S+ AVG+ D +VRI SL P L ++ + L +
Sbjct: 358 TERKEMSADVVCMSLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQALPAQ 416
Query: 266 IIPRSVLLCAFE----------------GISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
P S LC E G YL L +G LL +L+ TG+L+D +
Sbjct: 417 --PES--LCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTR 472
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
LG++P+ L + V A S R + YS + + ++ + + F S P+
Sbjct: 473 YLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPE 532
Query: 370 SLAIAKEGELTIGTIDDIQKLHIR-SIPLGEHPRR-ICHQEQSRTFAI 415
+ L I ++ + + + + PL PR+ + H E + I
Sbjct: 533 GIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIII 580
Score = 222 (83.2 bits), Expect = 1.4e-44, Sum P(3) = 1.4e-44
Identities = 75/299 (25%), Positives = 143/299 (47%)
Query: 493 IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHH 551
+V +G KL+ + + + ++ F G++L + + +++Y D G ++L +C +
Sbjct: 615 LVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLRKC-EN 668
Query: 552 GHILALYV---QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD 608
HI A Y+ QT G ++V D+ +S + YK E + A D W++ +LD D
Sbjct: 669 KHI-ANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYD 727
Query: 609 IYLGAENNFNLFTVR--KNSEGATDEE---------RGRLEVVGEYHLGEFVNRFRHGSL 657
GA+ N+ VR N+ DE+ RG L G E + + G
Sbjct: 728 TVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLN--GASQKAEVIMNYHVGET 785
Query: 658 VMRLPDSDV--GQIPTVIFGTVNGVIGVIASLP-HEQYLFLEKLQTNLRKVIKGVGGLNH 714
V+ L + + G ++++ T++G IG++ HE + F + ++ +LR + G +H
Sbjct: 786 VLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDH 845
Query: 715 EQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL-TR 772
+RS+ KN +DGDL E F + + +S+ ++ + E+ K++E++ TR
Sbjct: 846 LSFRSYY-----FPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDIRTR 899
Score = 40 (19.1 bits), Expect = 1.4e-44, Sum P(3) = 1.4e-44
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 31 YVNLGPIVDF-CVV-----DLERQGQGQVVTCSGAYKDGSL 65
Y N G D C + DL+ +G + CS +K S+
Sbjct: 38 YKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSM 78
Score = 38 (18.4 bits), Expect = 8.9e-13, Sum P(3) = 8.9e-13
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 414 AICSLKNQSCAEESEM--HFVRLL-----DDQTFEFISTYPL---DTF 451
A+C LK SE H++ + DD+ EF S PL DTF
Sbjct: 118 AMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTF 165
Score = 38 (18.4 bits), Expect = 8.9e-13, Sum P(3) = 8.9e-13
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 397 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 452
L E+ R +E S SL N E+ L D T IS P D +
Sbjct: 354 LNEYTER---KEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQ 406
Score = 37 (18.1 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 263 GGEIIPRSVLLCAFEGISY 281
GG P VL+C+ I+Y
Sbjct: 20 GGSDGPSGVLICSENYITY 38
>FB|FBgn0035162 [details] [associations]
symbol:CG13900 species:7227 "Drosophila melanogaster"
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0005686 "U2 snRNP"
evidence=ISS;IDA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0007052 GO:GO:0022008
Gene3D:2.130.10.10 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 GO:GO:0005686 eggNOG:NOG247734 EMBL:BT021338
ProteinModelPortal:Q5BI86 SMR:Q5BI86 STRING:Q5BI86 PaxDb:Q5BI86
PRIDE:Q5BI86 FlyBase:FBgn0035162 InParanoid:Q5BI86
OrthoDB:EOG4B5MM0 ArrayExpress:Q5BI86 Bgee:Q5BI86 Uniprot:Q5BI86
Length = 1227
Score = 282 (104.3 bits), Expect = 2.1e-44, Sum P(3) = 2.1e-44
Identities = 72/235 (30%), Positives = 116/235 (49%)
Query: 27 VLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI- 85
+++ + PI+ V DL + Q+ G +LR++R+G+ ++E A EL G
Sbjct: 397 LVDELPSFAPIITSQVADLANEDTPQLYVLCGRGPRSTLRVLRHGLEVSEMAVSELPGNP 456
Query: 86 KGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYN 145
+W+++ DD FD +++VSF++ T L +++ GF T TL C +
Sbjct: 457 NAVWTVKKRADDEFDAYIIVSFVNAT--LVLSIGETVEEVTDSGFLGTTPTLCCAALGDD 514
Query: 146 QLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGD-G 204
LVQV +R + S R NEWK+P S+ N QV++ G LVY E+ G
Sbjct: 515 ALVQVYPDGIRHIRSDKRV--NEWKAPGKKSITKCAVNQRQVVITLSGRELVYFEMDPTG 572
Query: 205 ILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLIT 258
L E + +++ EI C+ + + E S AVG+ D +VRI SL N +T
Sbjct: 573 ELNEYTERSEMPAEIMCMALGTVPEGEQRSWFLAVGL-ADNTVRILSLDPNNCLT 626
Score = 229 (85.7 bits), Expect = 2.1e-44, Sum P(3) = 2.1e-44
Identities = 85/363 (23%), Positives = 161/363 (44%)
Query: 432 VRLLDDQTFEFISTYPLDTFE--YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRI 489
+R LD + + + PL E ++L S + D Y VG A L ++G
Sbjct: 875 IRCLDAMHGQTMFSVPLTQNEAIMSMAMLKFSIAADGRYYLAVGIAKDLQLNPRISQGGC 934
Query: 490 L-VFIVED--GKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQS 546
+ ++ ++ L+ + + +L F G+LLA + +++Y D G +++
Sbjct: 935 IDIYKIDPTCSSLEFMHRTDIDEIPGALCGFQGRLLAGCGRMLRIY-----DFGKKKMLR 989
Query: 547 ECGH-HGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEIL 605
+C + H + +Q G + V D+ +S+ + Y+ E + A D + W++A +L
Sbjct: 990 KCENKHIPYQIVNIQAMGHRVYVSDVQESVFFIRYRRAENQLIIFADDTHPRWVTATTLL 1049
Query: 606 DDDIYLGAENNFNLFTVRKNSEGATDE------------ERGRLEVVGEYHLGEFVNRFR 653
D D A+ NL ++++ TD+ +RG L G E + F
Sbjct: 1050 DYDTIAIADKFGNL-SIQRLPHSVTDDVDEDPTGTKSLWDRGLLS--GASQKSENICSFH 1106
Query: 654 HGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVIASLP-HEQYLFLEKLQTNLRKVIKGVG 710
G ++M L + + G +I+ T++G +G E Y F + L+ ++R +
Sbjct: 1107 VGEIIMSLQKATLIPGGSEALIYATLSGTVGAFVPFTSREDYDFFQHLEMHMRNENPPLC 1166
Query: 711 GLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 770
G +H +RS KN LDGDL E +L + + I+ M + ++CK++E++
Sbjct: 1167 GRDHLSYRS-----SYYPVKNVLDGDLCEQYLSIEAAKQKSIAGDMFRTPNQICKKLEDI 1221
Query: 771 -TR 772
TR
Sbjct: 1222 RTR 1224
Score = 97 (39.2 bits), Expect = 2.1e-44, Sum P(3) = 2.1e-44
Identities = 32/154 (20%), Positives = 68/154 (44%)
Query: 277 EGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRP 336
+G YL L +G LL +L+ +G+L D + LG++P+ L + + V A S R
Sbjct: 669 KGTIYLNIGLSNGVLLRTVLDPVSGDLADTRTRYLGSRPVKLFRIKMQGSEAVLAMSSRT 728
Query: 337 TVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIR-SI 395
+ Y + + ++ + + + F+S + + L I ++ + + + +
Sbjct: 729 WLSYYHQNRFHLTPLSYETLEYASGFSSEQCSEGIVAISTNTLRILALEKLGAVFNQVAF 788
Query: 396 PLGEHPRR-ICHQEQSRTFAICSLKNQSCAEESE 428
PL PR + H + R I + + E+++
Sbjct: 789 PLQYTPRTFVIHPDTGRML-IAETDHNAYTEDTK 821
Score = 58 (25.5 bits), Expect = 8.0e-15, Sum P(3) = 8.0e-15
Identities = 33/136 (24%), Positives = 60/136 (44%)
Query: 195 HLVYLEIG-DGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDIS----VRIF 249
H+V +++G D + +++YE + D++P G+ +Q D+ VR +
Sbjct: 169 HMVGVDVGFDNPMLAC--LEIDYEEA--DMDPSGDAAQRTQQTLTFYELDLGLNHVVRKY 224
Query: 250 SLP---DLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDR 306
S P N + GG P VL+C+ ++Y LGD H + + + +L D
Sbjct: 225 SEPLEEHANFLVSVP-GGNDGPSGVLICSENYLTYK--NLGDQHDIRCPIPRRRNDLDDP 281
Query: 307 KKVSLGTQPITLRTFS 322
++ + T RT S
Sbjct: 282 ERGMIFICSATHRTKS 297
Score = 39 (18.8 bits), Expect = 6.5e-19, Sum P(3) = 6.5e-19
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 31 YVNLGPIVDF-CVV-----DLERQGQGQVVTCSGAYKDGSL 65
Y NLG D C + DL+ +G + CS ++ S+
Sbjct: 258 YKNLGDQHDIRCPIPRRRNDLDDPERGMIFICSATHRTKSM 298
Score = 38 (18.4 bits), Expect = 2.9e-38, Sum P(3) = 2.9e-38
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 323 SKNTTHVFAASDRPTVIYSSNKKLLYSNVNL 353
+++TT D P +NK +Y N+ L
Sbjct: 648 TESTTQGGLDDDAPAQRSGNNKGTIYLNIGL 678
>UNIPROTKB|F1P529 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 OMA:FDTIPVA
EMBL:AADN02051593 EMBL:AADN02051594 IPI:IPI00576925
Ensembl:ENSGALT00000003987 ArrayExpress:F1P529 Uniprot:F1P529
Length = 1228
Score = 333 (122.3 bits), Expect = 2.0e-43, Sum P(3) = 2.0e-43
Identities = 110/407 (27%), Positives = 186/407 (45%)
Query: 33 NLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWSL 91
+L PI+ + DL + Q+ G SLR++R+G+ ++E A EL G +W++
Sbjct: 403 SLSPILCCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTV 462
Query: 92 RSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVT 151
R +D FD +++VSF++ T L +++ GF T TL C + LVQV
Sbjct: 463 RRHVEDEFDAYIIVSFVNAT--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVY 520
Query: 152 SGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTE-V 209
+R + + R NEWK+P ++ N QV++A GG LVY E+ G L E
Sbjct: 521 PDGIRHIRADKRV--NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYT 578
Query: 210 KHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PD--LNLITKEHLGGEI 266
+ ++ ++ C+ + + S+ AVG+ D +VRI SL P L ++ + L +
Sbjct: 579 ERKEMSADVVCMSLANVPPGEQRSRFLAVGL-VDNTVRIISLDPSDCLQPLSMQALPAQ- 636
Query: 267 IPRSVLLCAFE----------------GISYLLCALGDGHLLNFLLNMKTGELTDRKKVS 310
P S LC E G YL L +G LL +L+ TG+L+D +
Sbjct: 637 -PES--LCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRY 693
Query: 311 LGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDS 370
LG++P+ L + V A S R + YS + + ++ + + F S P+
Sbjct: 694 LGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEG 753
Query: 371 LAIAKEGELTIGTIDDIQKLHIR-SIPLGEHPRR-ICHQEQSRTFAI 415
+ L I ++ + + + + PL PR+ + H E + I
Sbjct: 754 IVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIII 800
Score = 222 (83.2 bits), Expect = 2.0e-43, Sum P(3) = 2.0e-43
Identities = 74/299 (24%), Positives = 142/299 (47%)
Query: 493 IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHH 551
+V G KL+ + + + ++ F G++L + + +++Y D G ++L +C +
Sbjct: 940 LVNGGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLRKCENK 994
Query: 552 GHILALYV---QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD 608
HI A Y+ QT G ++V D+ +S + YK E + A D W++ +LD D
Sbjct: 995 KHI-ANYICGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTATLLDYD 1053
Query: 609 IYLGAENNFNLFTVR--KNSEGATDEE---------RGRLEVVGEYHLGEFVNRFRHGSL 657
GA+ N+ VR N+ DE+ RG L G E + + G
Sbjct: 1054 TVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLN--GASQKAEVIMNYHVGET 1111
Query: 658 VMRLPDSDV--GQIPTVIFGTVNGVIGVIASLP-HEQYLFLEKLQTNLRKVIKGVGGLNH 714
V+ L + + G ++++ T++G IG++ HE + F + ++ +LR + G +H
Sbjct: 1112 VLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDH 1171
Query: 715 EQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL-TR 772
+RS+ KN +DGDL E F + + +++ ++ + E+ K++E++ TR
Sbjct: 1172 LSFRSYY-----FPVKNVIDGDLCEQFNSMEPNKQKNVAEELDRTPPEVSKKLEDIRTR 1225
Score = 47 (21.6 bits), Expect = 6.0e-13, Sum P(3) = 6.0e-13
Identities = 34/111 (30%), Positives = 45/111 (40%)
Query: 180 ATANASQVLLATGGGHLVYLEIGDGILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAV 238
A S L A LVY +G + E A LE + D +P GE + +Q
Sbjct: 150 ARLTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLT 209
Query: 239 GMWTDIS----VRIFSLP---DLN-LITKEHLGGEIIPRSVLLCAFEGISY 281
D+ VR +S P N LIT GG P VL+C+ I+Y
Sbjct: 210 FYELDLGLNHVVRKYSEPLEEHGNFLITVP--GGSDGPSGVLICSENYITY 258
Score = 42 (19.8 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 485 TKGRILVFIVED---GKLQLIAEKETKGAVYSLNAF 517
++G+IL + D GK+ + E G + SL AF
Sbjct: 33 SRGKILELLRPDPNTGKVHTLLTVEVFGVIRSLMAF 68
Score = 40 (19.1 bits), Expect = 2.0e-43, Sum P(3) = 2.0e-43
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 31 YVNLGPIVDF-CVV-----DLERQGQGQVVTCSGAYKDGSL 65
Y N G D C + DL+ +G + CS +K S+
Sbjct: 258 YKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSM 298
Score = 38 (18.4 bits), Expect = 6.0e-13, Sum P(3) = 6.0e-13
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 414 AICSLKNQSCAEESEM--HFVRLL-----DDQTFEFISTYPL---DTF 451
A+C LK SE H++ + DD+ EF S PL DTF
Sbjct: 338 AMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTF 385
Score = 38 (18.4 bits), Expect = 6.0e-13, Sum P(3) = 6.0e-13
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 397 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 452
L E+ R +E S SL N E+ L D T IS P D +
Sbjct: 574 LNEYTER---KEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQ 626
>UNIPROTKB|F5GZ34 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
GO:GO:0005634 GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI01010454
ProteinModelPortal:F5GZ34 SMR:F5GZ34 Ensembl:ENST00000538470
ArrayExpress:F5GZ34 Bgee:F5GZ34 Uniprot:F5GZ34
Length = 187
Score = 455 (165.2 bits), Expect = 2.0e-42, P = 2.0e-42
Identities = 98/187 (52%), Positives = 124/187 (66%)
Query: 599 MSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLV 658
MSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLV
Sbjct: 1 MSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLV 60
Query: 659 MR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQW 717
M+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H W
Sbjct: 61 MQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFW 120
Query: 718 RSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRV 767
RSF+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K V
Sbjct: 121 RSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVV 180
Query: 768 EELTRLH 774
EELTR+H
Sbjct: 181 EELTRIH 187
>WB|WBGene00019323 [details] [associations]
symbol:teg-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 eggNOG:NOG247734
GeneTree:ENSGT00530000063396 GO:GO:0001703 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA EMBL:FO081029 PIR:T32916
RefSeq:NP_491953.1 ProteinModelPortal:O44985 STRING:O44985
PaxDb:O44985 EnsemblMetazoa:K02F2.3 GeneID:172406
KEGG:cel:CELE_K02F2.3 UCSC:K02F2.3 CTD:172406 WormBase:K02F2.3
InParanoid:O44985 NextBio:875387 Uniprot:O44985
Length = 1220
Score = 342 (125.4 bits), Expect = 3.1e-42, Sum P(2) = 3.1e-42
Identities = 101/384 (26%), Positives = 181/384 (47%)
Query: 33 NLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWSL 91
+L P+ D + D+ R+ Q+ + G SL+++RNG+ I+E A +L G +W++
Sbjct: 403 SLSPLTDAVIGDIAREDAAQIYSLVGRGARSSLKVLRNGLEISEMAVSDLPGNPNAVWTV 462
Query: 92 RSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVT 151
+ + +D +D+++VVSF++ T LA+ + GF T T+ C + LVQ+
Sbjct: 463 KKNIEDQYDSYIVVSFVNAT--LALTIGDTVEEASDSGFLPTTPTIGCAMIGDDSLVQIY 520
Query: 152 SGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG-DGILTEVK 210
S +R + + R NEWK+PP + N QV +A GG LVY E+ +G L E
Sbjct: 521 SEGIRHIRADKRI--NEWKAPPRRQIVKCAVNRRQVAVALTGGELVYFELDLNGTLNEFT 578
Query: 211 HAQL-EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-PDLNLITKEHLGGEIIP 268
+L +I+C+ + I E S+ A+G D +VRI SL P+ L+ P
Sbjct: 579 ERKLFNADIACMTFSEISEGELNSRFLALGT-VDNAVRIISLDPNDMLMPLSTQSLPCPP 637
Query: 269 RSVLLCAF-----EGIS--YLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTF 321
S+LL +G++ +L L +G L ++ TG + D + LGT+P+ L
Sbjct: 638 ESILLIDTPNEDGKGVAAVHLNIGLQNGCLFRNTVDNVTGAIMDTRTRYLGTRPVKLFKV 697
Query: 322 SSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTI 381
+ + + S R ++Y ++ + ++ + + F S + + L I
Sbjct: 698 QCQGRSAILCTSSRSWLLYHFQRRFHLTPLSYANLEYAASFCSNQCSEGIVAISASTLRI 757
Query: 382 GTIDDIQ-KLHIRSIPLGEHPRRI 404
+ + +++S PRR+
Sbjct: 758 IAAEKLGVAFNVQSFEHKMTPRRV 781
Score = 194 (73.4 bits), Expect = 3.1e-42, Sum P(2) = 3.1e-42
Identities = 71/307 (23%), Positives = 144/307 (46%)
Query: 484 PTKGRILVF-IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGT 541
PT+G + F + +G + + ET V +++ F G L + +++Y D G
Sbjct: 923 PTRGCVYTFHLSANGDRFDFLHRTETPLPVGAIHDFRGMALVGFGRFLRMY-----DIGQ 977
Query: 542 RELQSECGHHGHILALY-VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 600
++L ++C + +++ +Q+ G I+V D +S+ L Y+ + + A D +++
Sbjct: 978 KKLLAKCENKNFPVSIVNIQSTGQRIIVSDSQESVHFLRYRKGDNQLVVFADDTTPRYVT 1037
Query: 601 AVEILDDDIYLGAENNFNLFTVR---KNSEGATDE--------ERGRLEVVGEYHLGEFV 649
V +LD A+ NL VR + +E D+ +RG L G E V
Sbjct: 1038 CVCVLDYHTVAVADKFGNLAVVRLPERVNEDVQDDPTVSKSVWDRGWLN--GASQKVELV 1095
Query: 650 NRFRHGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVIAS-LPHEQYLFLEKLQTNLRKVI 706
+ F G + L + + G +++ T+ G IG + S + ++ F L+ ++R
Sbjct: 1096 SNFFIGDTITSLQKTSLMPGANEALVYTTIGGAIGCLVSFMSKDEVDFFTNLEMHVRSEY 1155
Query: 707 KGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKR 766
+ G +H +RS+ K+V +DGD+ E F + + ++++ + +V E+ K+
Sbjct: 1156 PPLCGRDHLAYRSYYAPCKSV-----IDGDICEQFSLMDTQKQKDVAEELGKTVSEISKK 1210
Query: 767 VEEL-TR 772
+E++ TR
Sbjct: 1211 LEDIRTR 1217
Score = 37 (18.1 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 182 ANASQVLLATGGGHLVYLEI 201
A+A ++ AT G L Y E+
Sbjct: 857 ASAISLISATSGDKLSYFEL 876
>POMBASE|SPAPJ698.03c [details] [associations]
symbol:prp12 "U2 snRNP-associated protein Sap130
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000245
"spliceosomal complex assembly" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=ISS] [GO:0030620 "U2 snRNA binding" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 PomBase:SPAPJ698.03c EMBL:CU329670
GenomeReviews:CU329670_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
GO:GO:0005681 GO:GO:0007049 GO:GO:0000245 GO:GO:0005686
GO:GO:0045292 eggNOG:NOG247734 GO:GO:0030620 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA OrthoDB:EOG4FR40R EMBL:AB034966
RefSeq:NP_594414.1 IntAct:Q9UTT2 STRING:Q9UTT2
EnsemblFungi:SPAPJ698.03c.1 GeneID:2543278 KEGG:spo:SPAPJ698.03c
NextBio:20804299 Uniprot:Q9UTT2
Length = 1206
Score = 320 (117.7 bits), Expect = 1.8e-41, Sum P(3) = 1.8e-41
Identities = 104/395 (26%), Positives = 179/395 (45%)
Query: 25 VEVLERYVNLGPIVDFCVVDLERQGQG-QVVTCSGAYKDGSLRIVRNGIGINEQASVELQ 83
+ ++E +L + D ++ G+ Q+ T G + SLR +R G+ E + EL
Sbjct: 419 LSLVEEIPSLYSLTDTLLMKAPSSGEANQLYTVCGRGSNSSLRQLRRGLETTEIVASELP 478
Query: 84 GIK-GMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDA 142
G +W+L+ + D +D+++++SF + T L +++ GF S TL
Sbjct: 479 GAPIAIWTLKLNQTDVYDSYIILSFTNGT--LVLSIGETVEEISDSGFLSSVSTLNARQM 536
Query: 143 IYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG 202
+ LVQ+ +R + + + +EWK P V + N Q+++A G LVY E+
Sbjct: 537 GRDSLVQIHPKGIRYIRANKQT--SEWKLPQDVYVVQSAINDMQIVVALSNGELVYFEMS 594
Query: 203 D----GILTEVKHAQ-LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLI 257
D G L E + + L ++ L + P+ E S + D +VR+ SL DL
Sbjct: 595 DDVEGGQLNEYQERKTLTANVTSLALGPVQEGSRRSNFMCLAC-DDATVRVLSL-DL-YT 651
Query: 258 TKEHLGGEIIPRSV-LLCAF----EGIS--YLLCALGDGHLLNFLLNMKTGELTDRKKVS 310
T E+L + + LC G+S YL L +G L ++++ +G+L D +
Sbjct: 652 TLENLSVQALSSPANSLCIIPMNVNGVSTLYLHIGLMNGVYLRTVIDVTSGQLLDTRTRF 711
Query: 311 LGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDS 370
LG + + + + KN V A S R + YS + L S + + H F S P+
Sbjct: 712 LGPRAVKIYPITMKNQNTVLAVSSRTFLAYSYQQNLQLSPIAYSAIDHASSFASEQCPEG 771
Query: 371 LAIAKEGELTIGTIDDIQK-LHIRSIPLGEHPRRI 404
+ ++ L I T+D +Q L PL PR+I
Sbjct: 772 IVAIQKNTLKIFTVDSLQDDLKSDIYPLICTPRKI 806
Score = 205 (77.2 bits), Expect = 1.8e-41, Sum P(3) = 1.8e-41
Identities = 83/371 (22%), Positives = 161/371 (43%)
Query: 419 KNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 478
K +S + F+ + D + + I PL E S+ + F + + G+A +
Sbjct: 844 KQNEHTSKSWVSFISVFDMISKKIIHESPLGDNEAAFSMTAAFFKNRDEFFLVAGSATNM 903
Query: 479 PEENEP-TKGRILVFIVED-GK-LQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWM 535
E + G V+ D GK L+LI+ E G +L F G++LA + + +++Y
Sbjct: 904 DLECRTCSHGNFRVYRFHDEGKKLELISHTEIDGIPMALTPFQGRMLAGVGRFLRIY--- 960
Query: 536 LRDDGTRELQSECGHHGHI--LALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARD 593
D G +++ + G + ++ + IVV D S+ ++YK E+ + A D
Sbjct: 961 --DLGNKKMLRK-GELSAVPLFITHITVQASRIVVADSQYSVRFVVYKPEDNHLLTFADD 1017
Query: 594 YNANWMSAVEILDDDIYLGAENNFNLFTVR--KNSEGATDEERGRLEVVGEYHLGEFVNR 651
W + ++D D G + N++ +R ++ DEE +++ H F+N
Sbjct: 1018 TIHRWTTTNVLVDYDTLAGGDKFGNIWLLRCPEHVSKLADEENSESKLI---HEKPFLNS 1074
Query: 652 FRHG-SLVMRLPDSDV-----------GQIPTVIFGTVNGVIGVIAS-LPHEQYLFLEKL 698
H L+ +D+ G +++ + G +GV + E F ++L
Sbjct: 1075 TPHKLDLMAHFFTNDIPTSLQKVQLVEGAREVLLWTGLLGTVGVFTPFINQEDVRFFQQL 1134
Query: 699 QTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNV 758
+ LRK + G +H +RS+ K V +DGDL E + L + I+ ++
Sbjct: 1135 EFLLRKECPPLAGRDHLAYRSYYAPVKCV-----IDGDLCEMYYSLPHPVQEMIANELDR 1189
Query: 759 SVEELCKRVEE 769
++ E+ K++E+
Sbjct: 1190 TIAEVSKKIED 1200
Score = 52 (23.4 bits), Expect = 1.8e-41, Sum P(3) = 1.8e-41
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 4 FYVLPK---QLIKLNLQPDAKGSYVEVLERYVNLGPI 37
FY+L L+KL ++ D +G+ VE+ +Y + P+
Sbjct: 318 FYLLQTGDGDLLKLTIEHDGQGNVVELRLKYFDTVPL 354
Score = 44 (20.5 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 155 VRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEV 209
+R ++++ + W S N S VL G L+ GDG L ++
Sbjct: 277 LRRQAASANAISTPWNQVNSNSANDGPLIVSAVLHKMKGSFFYLLQTGDGDLLKL 331
Score = 44 (20.5 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 270 SVLLCAFEGISYLLCALGDGHLLNFLLNMK-TGELTDRKKVSLGTQPITLRTFSSKNTTH 328
S +L +G + L GDG LL + G + + + T P+ ++ K T
Sbjct: 307 SAVLHKMKGSFFYLLQTGDGDLLKLTIEHDGQGNVVELRLKYFDTVPLAVQLNILK-TGF 365
Query: 329 VFAASD 334
+F A++
Sbjct: 366 LFVATE 371
Score = 37 (18.1 bits), Expect = 6.4e-40, Sum P(3) = 6.4e-40
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 39 DFCVVDLERQGQGQVVTCSGAYKD 62
D + +E GQG VV Y D
Sbjct: 327 DLLKLTIEHDGQGNVVELRLKYFD 350
Score = 37 (18.1 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 188 LLATGGGHLVYLEI---GDGILTEVK 210
LL TG G L+ L I G G + E++
Sbjct: 320 LLQTGDGDLLKLTIEHDGQGNVVELR 345
>GENEDB_PFALCIPARUM|PFL1680w [details] [associations]
symbol:PFL1680w "splicing factor 3b, subunit 3,
130kD, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0005681 GO:GO:0003676 EMBL:AE014188 KO:K12830
HOGENOM:HOG000216677 RefSeq:XP_001350742.1
ProteinModelPortal:Q8I574 PRIDE:Q8I574
EnsemblProtists:PFL1680w:mRNA GeneID:811388 KEGG:pfa:PFL1680w
EuPathDB:PlasmoDB:PF3D7_1234800 OMA:PVTSSMC ProtClustDB:CLSZ2733835
Uniprot:Q8I574
Length = 1329
Score = 280 (103.6 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
Identities = 90/371 (24%), Positives = 161/371 (43%)
Query: 27 VLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI- 85
++++ +L PI+D ++D + Q+ T G SLRI+++G+ I E A EL G
Sbjct: 429 LVDQIYSLSPILDMKIIDAKNTHTPQIYTLCGRGPRSSLRILQHGLSIEELADNELPGKP 488
Query: 86 KGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYN 145
K +W+++ +D ++VVSF T IL + + TL + N
Sbjct: 489 KYIWTIKKDNLSEYDGYIVVSFEGNTLILEIGESVEEVSDTL--LLNNVTTLHINILYDN 546
Query: 146 QLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDG- 204
+QV +R ++ ++ EW +P + A++N+SQ++++ GG L+Y EI +
Sbjct: 547 SFIQVYDTGIRHING---KVVQEWVAPKNKQIKAASSNSSQIVISLSGGELIYFEIDESH 603
Query: 205 ILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG 264
L E+ L E+ CL I I N + AVG ++ VR+ S+ + + K+ L
Sbjct: 604 TLVEIFRKNLNVEVLCLSIQQIPPNRVRANFLAVGCLDNV-VRLLSI-EKDKYFKQ-LST 660
Query: 265 EIIPRSVL---LCAFE-----------GISYLLCALGDGHLLNFLLNMKTGELTDRKKVS 310
++P + +C E I +L L G LL +++ G L++
Sbjct: 661 HLLPNNSSPQDICISEMNDNGNTMKERNIIFLNIGLNTGVLLRSIIDPVAGTLSNHYSKY 720
Query: 311 LGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDS 370
LG + I + + + ++ + Y K LYS +N + + F S D
Sbjct: 721 LGAKSIKICPVNVNKNPALLVLCEKTYLCYMHQGKFLYSPLNYDMLEYASSFYSPQCSDG 780
Query: 371 LAIAKEGELTI 381
L I
Sbjct: 781 YVAISSNSLRI 791
Score = 196 (74.1 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
Identities = 81/358 (22%), Positives = 155/358 (43%)
Query: 432 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC--VGTAYVLPEENEP-TKGR 488
+++++ + + LD E S+ +C +C VGT L + + T
Sbjct: 983 IKIINPVNLQILDKISLDMEEAALSVCACELE----ALHCLIVGTTTNLSLKTKSLTSAS 1038
Query: 489 ILVFIVE-DGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSE 547
+ V+ + KL L+ + Y ++NGKL+A+I K+++Y G ++L +
Sbjct: 1039 LRVYTYDIQYKLNLLHITPIEEQPYCFCSYNGKLIASIGNKLRIYAL-----GKKKLLKK 1093
Query: 548 CGHHGHILALY-VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD 606
C + A+ ++ G+ I D+ +S+ + Y + + + D W++ EILD
Sbjct: 1094 CEYKDIPEAIVSIKISGNRIFACDIRESVLIFFYDPNQNTLRLISDDIIPRWITCSEILD 1153
Query: 607 DDIYLGAENNFNLFTVRKNSEGATDEE--RGRLEVVGEYHLGEFVNR-------FRHGSL 657
+ A+ ++F +R E DE + GE NR F G +
Sbjct: 1154 HHTIMAADKFDSVFILRVPEEAKQDEYGITNKCWYGGEIMNSSTKNRKLEHMMSFHIGEI 1213
Query: 658 VMRLPDSDVGQIPT----VIFGTVNGVIGVIASLPHEQYLFL-EKLQTNLRKVIKGVGGL 712
V + V PT +I+ T+ G IG +++ L L + L+ LR + G
Sbjct: 1214 VTSM--QKVRLSPTSSECIIYSTIMGTIGAFIPYDNKEELELTQHLEIILRTEKPPLCGR 1271
Query: 713 NHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 770
H +RS+ + +N +DGDL E F LS +I+ + + E++ +++E++
Sbjct: 1272 EHIFFRSYYHP-----VQNVVDGDLCEQFSSLSYDAQKKIANDLERTPEDILRKLEDI 1324
Score = 47 (21.6 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 16/86 (18%), Positives = 41/86 (47%)
Query: 681 IGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIES 740
I ++A + + + E Q ++K +K + + E+ + +NE + + +GD+
Sbjct: 839 IRMLAIIEADHNSYDENTQREIQKALKDIKLSDTERRKENDNENNNI----YSNGDVDNI 894
Query: 741 FLDLSRTRMDEISKTMNVSVEELCKR 766
++ S +E + N+S+ + K+
Sbjct: 895 DVNDSANMNEEFNSNDNISLAQNHKK 920
>UNIPROTKB|Q8I574 [details] [associations]
symbol:PFL1680w "Splicing factor 3b, subunit 3, 130kD,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0005681 GO:GO:0003676 EMBL:AE014188 KO:K12830
HOGENOM:HOG000216677 RefSeq:XP_001350742.1
ProteinModelPortal:Q8I574 PRIDE:Q8I574
EnsemblProtists:PFL1680w:mRNA GeneID:811388 KEGG:pfa:PFL1680w
EuPathDB:PlasmoDB:PF3D7_1234800 OMA:PVTSSMC ProtClustDB:CLSZ2733835
Uniprot:Q8I574
Length = 1329
Score = 280 (103.6 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
Identities = 90/371 (24%), Positives = 161/371 (43%)
Query: 27 VLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI- 85
++++ +L PI+D ++D + Q+ T G SLRI+++G+ I E A EL G
Sbjct: 429 LVDQIYSLSPILDMKIIDAKNTHTPQIYTLCGRGPRSSLRILQHGLSIEELADNELPGKP 488
Query: 86 KGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYN 145
K +W+++ +D ++VVSF T IL + + TL + N
Sbjct: 489 KYIWTIKKDNLSEYDGYIVVSFEGNTLILEIGESVEEVSDTL--LLNNVTTLHINILYDN 546
Query: 146 QLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDG- 204
+QV +R ++ ++ EW +P + A++N+SQ++++ GG L+Y EI +
Sbjct: 547 SFIQVYDTGIRHING---KVVQEWVAPKNKQIKAASSNSSQIVISLSGGELIYFEIDESH 603
Query: 205 ILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG 264
L E+ L E+ CL I I N + AVG ++ VR+ S+ + + K+ L
Sbjct: 604 TLVEIFRKNLNVEVLCLSIQQIPPNRVRANFLAVGCLDNV-VRLLSI-EKDKYFKQ-LST 660
Query: 265 EIIPRSVL---LCAFE-----------GISYLLCALGDGHLLNFLLNMKTGELTDRKKVS 310
++P + +C E I +L L G LL +++ G L++
Sbjct: 661 HLLPNNSSPQDICISEMNDNGNTMKERNIIFLNIGLNTGVLLRSIIDPVAGTLSNHYSKY 720
Query: 311 LGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDS 370
LG + I + + + ++ + Y K LYS +N + + F S D
Sbjct: 721 LGAKSIKICPVNVNKNPALLVLCEKTYLCYMHQGKFLYSPLNYDMLEYASSFYSPQCSDG 780
Query: 371 LAIAKEGELTI 381
L I
Sbjct: 781 YVAISSNSLRI 791
Score = 196 (74.1 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
Identities = 81/358 (22%), Positives = 155/358 (43%)
Query: 432 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC--VGTAYVLPEENEP-TKGR 488
+++++ + + LD E S+ +C +C VGT L + + T
Sbjct: 983 IKIINPVNLQILDKISLDMEEAALSVCACELE----ALHCLIVGTTTNLSLKTKSLTSAS 1038
Query: 489 ILVFIVE-DGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSE 547
+ V+ + KL L+ + Y ++NGKL+A+I K+++Y G ++L +
Sbjct: 1039 LRVYTYDIQYKLNLLHITPIEEQPYCFCSYNGKLIASIGNKLRIYAL-----GKKKLLKK 1093
Query: 548 CGHHGHILALY-VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD 606
C + A+ ++ G+ I D+ +S+ + Y + + + D W++ EILD
Sbjct: 1094 CEYKDIPEAIVSIKISGNRIFACDIRESVLIFFYDPNQNTLRLISDDIIPRWITCSEILD 1153
Query: 607 DDIYLGAENNFNLFTVRKNSEGATDEE--RGRLEVVGEYHLGEFVNR-------FRHGSL 657
+ A+ ++F +R E DE + GE NR F G +
Sbjct: 1154 HHTIMAADKFDSVFILRVPEEAKQDEYGITNKCWYGGEIMNSSTKNRKLEHMMSFHIGEI 1213
Query: 658 VMRLPDSDVGQIPT----VIFGTVNGVIGVIASLPHEQYLFL-EKLQTNLRKVIKGVGGL 712
V + V PT +I+ T+ G IG +++ L L + L+ LR + G
Sbjct: 1214 VTSM--QKVRLSPTSSECIIYSTIMGTIGAFIPYDNKEELELTQHLEIILRTEKPPLCGR 1271
Query: 713 NHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 770
H +RS+ + +N +DGDL E F LS +I+ + + E++ +++E++
Sbjct: 1272 EHIFFRSYYHP-----VQNVVDGDLCEQFSSLSYDAQKKIANDLERTPEDILRKLEDI 1324
Score = 47 (21.6 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 16/86 (18%), Positives = 41/86 (47%)
Query: 681 IGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIES 740
I ++A + + + E Q ++K +K + + E+ + +NE + + +GD+
Sbjct: 839 IRMLAIIEADHNSYDENTQREIQKALKDIKLSDTERRKENDNENNNI----YSNGDVDNI 894
Query: 741 FLDLSRTRMDEISKTMNVSVEELCKR 766
++ S +E + N+S+ + K+
Sbjct: 895 DVNDSANMNEEFNSNDNISLAQNHKK 920
>TAIR|locus:2081576 [details] [associations]
symbol:AT3G11960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM;IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006486 "protein glycosylation"
evidence=RCA] [GO:0009755 "hormone-mediated signaling pathway"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0048825 "cotyledon development" evidence=RCA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003676 KO:K12830 EMBL:BT006164
EMBL:AK229623 IPI:IPI00530914 RefSeq:NP_187802.2 UniGene:At.5413
ProteinModelPortal:Q84R20 IntAct:Q84R20 PaxDb:Q84R20 PRIDE:Q84R20
EnsemblPlants:AT3G11960.1 GeneID:820369 KEGG:ath:AT3G11960
TAIR:At3g11960 eggNOG:NOG322382 HOGENOM:HOG000030342
InParanoid:Q84R20 OMA:GMLLRFE PhylomeDB:Q84R20
ProtClustDB:CLSN2690873 ArrayExpress:Q84R20 Genevestigator:Q84R20
Uniprot:Q84R20
Length = 1379
Score = 222 (83.2 bits), Expect = 1.2e-30, Sum P(3) = 1.2e-30
Identities = 56/209 (26%), Positives = 102/209 (48%)
Query: 33 NLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINE--QASVELQGIKGMWS 90
N+ PI+DF V+D + + + Q+ C G +GSLRI+R+GI + + + + QGI G W+
Sbjct: 468 NIAPILDFSVMDDQNEKRDQIFACCGVTPEGSLRIIRSGINVEKLLKTAPVYQGITGTWT 527
Query: 91 LRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQV 150
++ D + +FLV+SF+ ETR+L++ L GF S T C LVQ+
Sbjct: 528 VKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDVTDSV-GFQSDVCTFACGLVADGLLVQI 586
Query: 151 TSGSVRLVSST----------SRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYL- 199
++RL T S + W P S+++ + ++++T + +
Sbjct: 587 HQDAIRLCMPTMDAHSDGIPVSSPFFSSW-FPENVSISLGAVGQNLIVVSTSNPCFLSIL 645
Query: 200 ---EIGDGI--LTEVKHAQLEYEISCLDI 223
+ + E++ L+YE+SC+ +
Sbjct: 646 GVKSVSSQCCEIYEIQRVTLQYEVSCISV 674
Score = 138 (53.6 bits), Expect = 1.2e-30, Sum P(3) = 1.2e-30
Identities = 43/192 (22%), Positives = 88/192 (45%)
Query: 311 LGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDS 370
+G P+ L FS + + A SDRP ++ ++ + L Y++++ + +H P S P
Sbjct: 822 IGITPVFLVPFSDSLDSDIIALSDRPWLLQTARQSLSYTSISFQPSTHATPVCSFECPQG 881
Query: 371 LAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK-NQSCAEESEM 429
+ E L + + ++ + + LG PR++ + +S+ + +C +
Sbjct: 882 ILFVSENCLHLVEMVHSKRRNAQKFQLGGTPRKVIYHSESKLLIVMRTDLYDTCTSD--- 938
Query: 430 HFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAY-----VLPE-ENE 483
+ +D + +S+Y L E G S+ ++ + VGT+ +LP E E
Sbjct: 939 --ICCVDPLSGSVLSSYKLKPGETGKSMELVRVGNEHVLV--VGTSLSSGPAILPSGEAE 994
Query: 484 PTKGRILVFIVE 495
TKGR+++ +E
Sbjct: 995 STKGRVIILCLE 1006
Score = 121 (47.7 bits), Expect = 1.2e-30, Sum P(3) = 1.2e-30
Identities = 38/126 (30%), Positives = 61/126 (48%)
Query: 643 YHLGEFVNRFRHGSLVMRLPDSDV----G---QIPT----VIFGTVNGVIGVIASLPHEQ 691
Y++GE + G + +LP DV G I T +I GT+ G I V A + E+
Sbjct: 1220 YYMGEIAMSIKKGCNIYKLPADDVLRSYGLSKSIDTADDTIIAGTLLGSIFVFAPISSEE 1279
Query: 692 YLFLEKLQTNL--RKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRM 749
Y LE +Q L + V G +H ++R N + A+ LDGD++ FL+L+ +
Sbjct: 1280 YELLEGVQAKLGIHPLTAPVLGNDHNEFRGRENPSQ---ARKILDGDMLAQFLELTNRQQ 1336
Query: 750 DEISKT 755
+ + T
Sbjct: 1337 ESVLST 1342
Score = 43 (20.2 bits), Expect = 7.4e-12, Sum P(3) = 7.4e-12
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 187 VLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPI-------GENPSYSQI-AAV 238
+L GG + E+ DG + ++ +L + S +I PI +N QI A
Sbjct: 433 ILWIEGGFLATFAEMADGTVFKLGTEKLHWMSSIQNIAPILDFSVMDDQNEKRDQIFACC 492
Query: 239 GMWTDISVRI 248
G+ + S+RI
Sbjct: 493 GVTPEGSLRI 502
>UNIPROTKB|F8WF81 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
GO:GO:0005634 GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI00942006
ProteinModelPortal:F8WF81 SMR:F8WF81 Ensembl:ENST00000451943
ArrayExpress:F8WF81 Bgee:F8WF81 Uniprot:F8WF81
Length = 127
Score = 256 (95.2 bits), Expect = 6.9e-21, P = 6.9e-21
Identities = 54/114 (47%), Positives = 72/114 (63%)
Query: 671 TVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAK 730
+V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRSF+ E+KT A
Sbjct: 14 SVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPAT 73
Query: 731 NFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVEELTRLH 774
F+DGDLIESFLD+SR +M E+ + + ++L K VEELTR+H
Sbjct: 74 GFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 127
>FB|FBgn0024698 [details] [associations]
symbol:Cpsf160 "Cleavage and polyadenylation specificity
factor 160" species:7227 "Drosophila melanogaster" [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=ISS;NAS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS;NAS] [GO:0006379 "mRNA cleavage" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR004871
Pfam:PF03178 EMBL:AE013599 GO:GO:0022008 GO:GO:0006378
GO:GO:0003723 eggNOG:COG5161 KO:K14401 GO:GO:0005847 GO:GO:0006379
GeneTree:ENSGT00550000075040 OMA:NIGDNRY EMBL:AF241364
EMBL:AF241365 EMBL:AF241366 EMBL:AY051896 RefSeq:NP_725397.1
RefSeq:NP_995833.1 UniGene:Dm.3414 ProteinModelPortal:Q9V726
STRING:Q9V726 PaxDb:Q9V726 PRIDE:Q9V726 EnsemblMetazoa:FBtr0089258
GeneID:44250 KEGG:dme:Dmel_CG10110 CTD:44250 FlyBase:FBgn0024698
InParanoid:Q9V726 OrthoDB:EOG4ZCRK8 PhylomeDB:Q9V726
GenomeRNAi:44250 NextBio:837008 Bgee:Q9V726 GermOnline:CG10110
Uniprot:Q9V726
Length = 1455
Score = 248 (92.4 bits), Expect = 6.8e-20, Sum P(4) = 6.8e-20
Identities = 91/328 (27%), Positives = 160/328 (48%)
Query: 469 YYCVGTAYVLPEENEPTKGRILVF-----IVEDGK------LQLIAEKETKGAVYSLNAF 517
Y C+GT + E+ ++G I ++ + E GK ++ I +KE KG V +++
Sbjct: 1133 YLCIGTNFNYSEDIT-SRGNIHIYDIIEVVPEPGKPMTKFKIKEIFKKEQKGPVSAISDV 1191
Query: 518 NGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISL 577
G L+ + QKI Y W LRD +L +I + T I + D+ KSISL
Sbjct: 1192 LGFLVTGLGQKI--YIWQLRDG---DLIGVAFIDTNIYVHQIITVKSLIFIADVYKSISL 1246
Query: 578 LIYKHEEGAIEERARDYNANWMSAVEILDDDIYLG-----AENNFNLFTVRKNSEGATDE 632
L ++ E + +RD+N + +E + D+ LG AE N ++ + + +
Sbjct: 1247 LRFQEEYRTLSLASRDFNPLEVYGIEFMVDNSNLGFLVTDAERNIIVYMYQPEARESLGG 1306
Query: 633 ERGRLEVVGEYHLGEFVNR-FR---HGS-LVMRLPDSDVGQIPTVIFGTVNGVIGVIASL 687
++ L +YHLG+ VN FR H L R P + V++GT++G +G L
Sbjct: 1307 QK--LLRKADYHLGQVVNTMFRVQCHQKGLHQRQPFLYENK-HFVVYGTLDGALGYCLPL 1363
Query: 688 PHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKT-VD-AKNFLDGDLIESFLDLS 745
P + Y LQ L + + GLN +++R+ + KK ++ ++ +DGDLI S+ ++
Sbjct: 1364 PEKVYRRFLMLQNVLLSYQEHLCGLNPKEYRTLKSSKKQGINPSRCIIDGDLIWSYRLMA 1423
Query: 746 RTRMDEISKTMNVSVEELCKRVEELTRL 773
+ +E++K + EE+ + E+ RL
Sbjct: 1424 NSERNEVAKKIGTRTEEILGDLLEIERL 1451
Score = 88 (36.0 bits), Expect = 6.8e-20, Sum P(4) = 6.8e-20
Identities = 43/153 (28%), Positives = 70/153 (45%)
Query: 22 GSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVE 81
G VE E V L P + + DL+ + +V +G K+G+L + N I S E
Sbjct: 502 GERVEFEEDGVTLRPHAE-SLQDLKIE----LVAATGHSKNGALSVFVNCINPQIITSFE 556
Query: 82 LQGIKGMWSL------RSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQ 135
L G +W++ +SS +D D F+++S + T L + GF
Sbjct: 557 LDGCLDVWTVFDDATKKSSRNDQHD-FMLLSQRNST--LVLQTGQEINEIENTGFTVNQP 613
Query: 136 TLFCHDAIYNQ-LVQVTSGSVRLVSSTSRELRN 167
T+F + + +VQVT+ VRL+ T R ++N
Sbjct: 614 TIFVGNLGQQRFIVQVTTRHVRLLQGT-RLIQN 645
Score = 44 (20.5 bits), Expect = 6.8e-20, Sum P(4) = 6.8e-20
Identities = 14/66 (21%), Positives = 27/66 (40%)
Query: 355 EVSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDIQKLH----IRSIPLGEHPRRICHQEQ 409
+V FN+ P+ L EL I + +R +PL PR++ + +
Sbjct: 984 DVRSFAAFNNVNIPNGFLYFDTTYELKISVLPSYLSYDSVWPVRKVPLRCTPRQLVYHRE 1043
Query: 410 SRTFAI 415
+R + +
Sbjct: 1044 NRVYCL 1049
Score = 40 (19.1 bits), Expect = 6.8e-20, Sum P(4) = 6.8e-20
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 230 PSYSQIAAVGMWTDISVRIFSLPDLNLI 257
PSY + A T + I+S+PD+ L+
Sbjct: 790 PSYWLVVARQSGT---LEIYSMPDMKLV 814
>POMBASE|SPCC11E10.08 [details] [associations]
symbol:rik1 "silencing protein Rik1" species:4896
"Schizosaccharomyces pombe" [GO:0000790 "nuclear chromatin"
evidence=TAS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006348 "chromatin silencing at telomere" evidence=TAS]
[GO:0007535 "donor selection" evidence=IMP] [GO:0030466 "chromatin
silencing at silent mating-type cassette" evidence=IMP] [GO:0030702
"chromatin silencing at centromere" evidence=IMP] [GO:0030989
"dynein-driven meiotic oscillatory nuclear movement" evidence=IGI]
[GO:0034613 "cellular protein localization" evidence=IMP]
[GO:0035391 "maintenance of chromatin silencing at silent
mating-type cassette" evidence=NAS] [GO:0043234 "protein complex"
evidence=EXP] [GO:0043494 "CLRC ubiquitin ligase complex"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045141 "meiotic telomere clustering" evidence=IMP] [GO:0051572
"negative regulation of histone H3-K4 methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000723 "telomere maintenance" evidence=IMP]
InterPro:IPR004871 Pfam:PF03178 PomBase:SPCC11E10.08 GO:GO:0005737
GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0000790
GO:GO:0030702 GO:GO:0006348 GO:GO:0030989 GO:GO:0051572
GO:GO:0045141 GO:GO:0051574 GO:GO:0007535 GO:GO:0035391
GO:GO:0043494 EMBL:AF136156 PIR:T40859 RefSeq:NP_588204.1
DIP:DIP-35634N IntAct:Q10426 STRING:Q10426
EnsemblFungi:SPCC11E10.08.1 GeneID:2539050 KEGG:spo:SPCC11E10.08
eggNOG:NOG255855 OrthoDB:EOG4Q887H NextBio:20800224 Uniprot:Q10426
Length = 1040
Score = 255 (94.8 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 117/495 (23%), Positives = 219/495 (44%)
Query: 207 TEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKE-HLGGE 265
TEV E EISCLD + + QI VG W+ V I + D + I+
Sbjct: 497 TEVARKVFESEISCLDFS------AQFQIG-VGFWSK-QVMILTFSDNSSISCAFQTNVP 548
Query: 266 IIPRSVLLCAFEGI----SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTF 321
+PR+++L EG+ + LL + G G +++L K + K GT P++ R F
Sbjct: 549 SLPRNIIL---EGVGVDRNLLLVSSGSGEFKSYVL-FKNNLVFSETK-HFGTTPVSFRRF 603
Query: 322 SSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTI 381
+ T++ +D P ++Y N L Y +++ + +C F + D L G L
Sbjct: 604 TMNIGTYIICNNDCPHMVYGFNGALCYMPLSMPQSYDVCQFRDNSGKDFLISVSLGGLKF 663
Query: 382 GTIDDIQKLHIRSIPLGEHP-RRICHQEQS--RTFAICSLKNQSCAEESEMHFVRLLDDQ 438
++ + +L R + L P + I Q + RT +S E + V DD
Sbjct: 664 LQLNPLPELTPRKVLLEHVPLQAIIFQNKLLLRTLENRYEDYESYKENYHLELVDSYDDN 723
Query: 439 TFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILV--FIVED 496
+F S + E +L + +S++ VGT+ + ++ P GR+++ F E
Sbjct: 724 SFRVFSFTENERCE---KVLKIN---ESSLL--VGTSIIEQDKLVPVNGRLILLEFEKEL 775
Query: 497 GKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILA 556
L++++ AV L +N + + A Q++ + K L ++ + S +L
Sbjct: 776 QSLKVVSSMVLSAAVIDLGVYNDRYIVAFGQQVAIVK--LTEERLM-IDSRISLGSIVLQ 832
Query: 557 LYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENN 616
L V+ G+ I + D + +++ + ++ + R + N + A + + +Y+ A N+
Sbjct: 833 LIVE--GNEIAIADSIGRFTIMYFDGQKFIVVARYL-FGENIVKAA-LYEGTVYIIATNS 888
Query: 617 FNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGT 676
L +R N + +R E V YHL + V++F++ + +++ P ++F T
Sbjct: 889 GLLKLLRYNKDAKNFNDRFICESV--YHLHDKVSKFQN----FPITNTNSFLEPKMLFAT 942
Query: 677 VNGVIGVIASLPHEQ 691
G IG I SL ++
Sbjct: 943 EIGAIGSIVSLKDKE 957
Score = 68 (29.0 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 32/133 (24%), Positives = 57/133 (42%)
Query: 33 NLGPIVDFCVV--DLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWS 90
NLGPI D V+ D+E+ + C+G ++ SL ++ + ++ ++ GI
Sbjct: 341 NLGPIHDLLVLKNDIEKS----FLVCAGTPRNASLIYFQHALKLDILGQTKISGILRAMV 396
Query: 91 LRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQV 150
L S + L + F SET +A N+ ++ +T+ + VQV
Sbjct: 397 LPSYPEHK----LFLGFPSET--VAFNIKEDFQLELDPSLSTKERTIAL-SGTNGEFVQV 449
Query: 151 TSGSVRLVSSTSR 163
TS + + S R
Sbjct: 450 TSTFLCIYDSAKR 462
>UNIPROTKB|Q10570 [details] [associations]
symbol:CPSF1 "Cleavage and polyadenylation specificity
factor subunit 1" species:9606 "Homo sapiens" [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0006379 "mRNA cleavage"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IDA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0006406 "mRNA
export from nucleus" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR004871 Pfam:PF03178
Reactome:REACT_1675 GO:GO:0006378 GO:GO:0003730 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG5161 KO:K14401
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
OMA:NIGDNRY CTD:29894 HOGENOM:HOG000007904 HOVERGEN:HBG051105
OrthoDB:EOG4BCDM3 EMBL:U37012 EMBL:BC017232 IPI:IPI00026219
RefSeq:NP_037423.2 UniGene:Hs.493202 ProteinModelPortal:Q10570
DIP:DIP-32694N IntAct:Q10570 MINT:MINT-1601544 STRING:Q10570
PhosphoSite:Q10570 DMDM:23503048 PaxDb:Q10570 PeptideAtlas:Q10570
PRIDE:Q10570 DNASU:29894 Ensembl:ENST00000349769
Ensembl:ENST00000568627 GeneID:29894 KEGG:hsa:29894 UCSC:uc003zcj.3
GeneCards:GC08M145618 HGNC:HGNC:2324 MIM:606027 neXtProt:NX_Q10570
PharmGKB:PA26841 InParanoid:Q10570 PhylomeDB:Q10570 ChiTaRS:CPSF1
GenomeRNAi:29894 NextBio:52452 ArrayExpress:Q10570 Bgee:Q10570
CleanEx:HS_CPSF1 Genevestigator:Q10570 GermOnline:ENSG00000071894
Uniprot:Q10570
Length = 1443
Score = 234 (87.4 bits), Expect = 5.5e-19, Sum P(3) = 5.5e-19
Identities = 101/376 (26%), Positives = 171/376 (45%)
Query: 426 ESEMHFVRLLDDQTFEFI--STYPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAYVL 478
+ E ++L+ ++E I + L +E+ + + S + V Y GT +
Sbjct: 1070 QQEAFSIQLISPVSWEAIPNARIELQEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQ 1129
Query: 479 PEENEPTKGRILVFIV-----EDG------KLQLIAEKETKGAVYSLNAFNGKLLAAINQ 527
EE +GRIL+ V E G K +++ EKE KG V +L NG L++AI Q
Sbjct: 1130 GEE-VTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQ 1188
Query: 528 KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 587
KI L W LR EL + + + +FI+ D+MKSISLL Y+ E +
Sbjct: 1189 KIFL--WSLR---ASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTL 1243
Query: 588 EERARDYNANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERGRLEVVGEYH 644
+RD + +V+ + D+ LG ++ + NL E RL ++H
Sbjct: 1244 SLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFH 1303
Query: 645 LGEFVNRF-R---HGSLVMRLPDSDVGQIPTVI-FGTVNGVIGVIASLPHEQYLFLEKLQ 699
+G VN F R G+ S V + + F T++G IG++ + + Y L LQ
Sbjct: 1304 VGAHVNTFWRTPCRGATEGLSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQ 1363
Query: 700 TNLRKVIKGVGGLNHEQWRSFNNEKKTVD--AKNFLDGDLIESFLDLSRTRMDEISKTMN 757
L ++ GLN +R + +++T+ +N LDG+L+ +L LS E++K +
Sbjct: 1364 NALTTMLPHHAGLNPRAFRMLHVDRRTLQNAVRNVLDGELLNRYLYLSTMERSELAKKIG 1423
Query: 758 VSVEELCKRVEELTRL 773
+ + + + E R+
Sbjct: 1424 TTPDIILDDLLETDRV 1439
Score = 74 (31.1 bits), Expect = 5.5e-19, Sum P(3) = 5.5e-19
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 26 EVLERYVNLGPIVDFCVVD---LERQGQG------QVVTCSGAYKDGSLRIVRNGIGINE 76
EV + +N+GP + V + L + Q ++V CSG K+G+L +++ I
Sbjct: 464 EVCDSILNIGPCANAAVGEPAFLSEEFQNSPEPDLEIVVCSGHGKNGALSVLQKSIRPQV 523
Query: 77 QASVELQGIKGMWSL 91
+ EL G MW++
Sbjct: 524 VTTFELPGCYDMWTV 538
Score = 60 (26.2 bits), Expect = 5.5e-19, Sum P(3) = 5.5e-19
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 356 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDIQKLH----IRSIPLGEHPRRICHQEQS 410
V PF++ P L ++GEL I + +R IPL + + +S
Sbjct: 972 VDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVES 1031
Query: 411 RTFAICSLKNQSCAEESEM 429
+ +A+ + N CA M
Sbjct: 1032 KVYAVATSTNTPCARIPRM 1050
>CGD|CAL0004426 [details] [associations]
symbol:orf19.5391 species:5476 "Candida albicans" [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=IEA] [GO:0030620 "U2 snRNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 CGD:CAL0004426
GO:GO:0008380 Gene3D:2.130.10.10 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 GO:GO:0007049 eggNOG:NOG247734 EMBL:AACQ01000051
EMBL:AACQ01000050 RefSeq:XP_717672.1 RefSeq:XP_717766.1
STRING:Q5A7S5 GeneID:3640538 GeneID:3640666 KEGG:cal:CaO19.12846
KEGG:cal:CaO19.5391 KO:K12830 Uniprot:Q5A7S5
Length = 1219
Score = 179 (68.1 bits), Expect = 6.3e-19, Sum P(2) = 6.3e-19
Identities = 94/370 (25%), Positives = 167/370 (45%)
Query: 432 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAY---VLPEENE 483
++++D ++ + I + LD E S+ + SF+ S + VG +LP N
Sbjct: 866 IQVVDSKSNQVIQSLQLDGNESIVSMSAVSFNKTSTPSVPASHLVVGVCTNQTILP--NS 923
Query: 484 PTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRE 543
K + F + LQL+ + E L F KLL A I+LY D G ++
Sbjct: 924 YDKSYLYTFKIGKKHLQLVHKTELDHIPQVLENFQDKLLVASGNHIRLY-----DIGQKQ 978
Query: 544 LQSEC----GHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE--ERARDYNAN 597
L + +I + QT I++ D KS S++ K +E + A D
Sbjct: 979 LLKKSTTIIDFSTNINKIIPQTNR--IIICDSHKS-SIVFAKFDESQNQFVPFADDVMKR 1035
Query: 598 WMSAVEILDDDIYLGAENNFNLFTVRKN---SEGATDE------ERG-------RLEVVG 641
++++ LD D +G + N+F R + S+ A D+ + G +L+ +
Sbjct: 1036 QITSIMNLDIDTLIGGDKFGNIFVTRIDEDISKQADDDWTILKTQDGILNSCPYKLQNLI 1095
Query: 642 EYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYL-FLEKLQT 700
E+H+G+ + F G L + +S VI+ + G IG++ L + + L LQ
Sbjct: 1096 EFHIGDIITSFNLGCLNLAGTES-------VIYTGLQGTIGLLIPLVSKSEVELLFNLQL 1148
Query: 701 NLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSV 760
+++ + G +H + RS+ N KN +DGDL+E FL+ + EIS+ +N SV
Sbjct: 1149 YMQQSQNNLVGKDHLKLRSYYNP-----IKNVIDGDLLERFLEFDISLKIEISRKLNKSV 1203
Query: 761 EELCKRVEEL 770
++ K++ +L
Sbjct: 1204 NDIEKKLIDL 1213
Score = 141 (54.7 bits), Expect = 6.3e-19, Sum P(2) = 6.3e-19
Identities = 69/323 (21%), Positives = 136/323 (42%)
Query: 25 VEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQG 84
++VLE L PI D ++D ++VT S ++ + +G+ L
Sbjct: 433 IDVLE---TLSPITDSKIID------SKLVTLSS---HSYVKSITHGVPTTTLVESPLPI 480
Query: 85 IK-GMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAI 143
+++ + S + D +LV+S ++ L +++ F T+
Sbjct: 481 TPTDIFTTKLSLESANDEYLVISSSLSSKTLVLSIGEVVEDVEDSEFVLDQPTIAVQQVG 540
Query: 144 YNQLVQVTSGSVRLVSSTSRELRN-EWKSPPGYSVNVATANASQVLLATGGGHLVYLEIG 202
+VQ+ S ++ V + + + +W P G ++ AT N QVL+A +VY EI
Sbjct: 541 IASVVQIYSNGIKHVRTVNGNKKTTDWFPPAGITITHATTNNQQVLIALSNLSVVYFEI- 599
Query: 203 DGILTEVKHAQLEYEISC-LDINPIGENPSY-SQIAAVGMWTDISVRIFSLPDLNLITKE 260
D ++ Q EI+ + I EN S S A +G +D ++++ SL + N + +
Sbjct: 600 DATDDQLIEYQDRLEIATTITAMAIQENISEKSPFAIIGC-SDETIQVVSLQEHNCLEIK 658
Query: 261 HLGGEIIPRSVL-LCAFEGI-SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITL 318
L S L + G +++ + +G ++ G L++ + +G++P++L
Sbjct: 659 SLQALSANSSSLKMLKSSGKETHVHIGMENGVYARIKIDTINGNLSNSRVKYIGSKPVSL 718
Query: 319 RTFSSKNTTH-VFAASDRPTVIY 340
N + A S P + Y
Sbjct: 719 SVIKFSNEIEGILAISSAPWISY 741
>UNIPROTKB|J9P418 [details] [associations]
symbol:CPSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004871
Pfam:PF03178 GO:GO:0005634 GO:GO:0003676
GeneTree:ENSGT00550000075040 EMBL:AAEX03008966
Ensembl:ENSCAFT00000043656 Uniprot:J9P418
Length = 1107
Score = 229 (85.7 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
Identities = 100/376 (26%), Positives = 171/376 (45%)
Query: 426 ESEMHFVRLLDDQTFEFI--STYPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAYVL 478
+ E ++L+ ++E I + L+ +E+ + + S + V Y GT +
Sbjct: 734 QQEAFSIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQ 793
Query: 479 PEENEPTKGRILVFIV-----EDG------KLQLIAEKETKGAVYSLNAFNGKLLAAINQ 527
EE +GRIL+ V E G K +++ EKE KG V +L NG L++AI Q
Sbjct: 794 GEE-VTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQ 852
Query: 528 KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 587
KI L W LR EL + + + +FI+ D+MKSISLL Y+ E +
Sbjct: 853 KIFL--WSLR---ASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTL 907
Query: 588 EERARDYNANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERGRLEVVGEYH 644
+RD + +V+ + D+ LG ++ + NL E RL ++H
Sbjct: 908 SLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFH 967
Query: 645 LGEFVNRF-R---HGSLVMRLPDSDVGQIPTVI-FGTVNGVIGVIASLPHEQYLFLEKLQ 699
+G VN F R G+ S V + + F T++G IG++ + + Y L LQ
Sbjct: 968 VGAHVNTFWRTPCRGAAEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQ 1027
Query: 700 TNLRKVIKGVGGLNHEQWRSFNNEKKTVD--AKNFLDGDLIESFLDLSRTRMDEISKTMN 757
L ++ GLN +R + +++ + +N LDG+L+ +L LS E++K +
Sbjct: 1028 NALTTMLPHHAGLNPRAFRMLHVDRRILQNAVRNVLDGELLNRYLYLSTMERGELAKKIG 1087
Query: 758 VSVEELCKRVEELTRL 773
+ + + + E R+
Sbjct: 1088 TTPDIILDDLLETDRV 1103
Score = 71 (30.1 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 26 EVLERYVNLGPIVDFCVVD---LERQGQG------QVVTCSGAYKDGSLRIVRNGIGINE 76
EV + +N+GP + + + L + Q ++V CSG K+G+L +++ I
Sbjct: 129 EVCDSILNIGPCANAAMGEPAFLSEEFQNSPEPDLEIVVCSGYGKNGALSVLQKSIRPQV 188
Query: 77 QASVELQGIKGMWSL 91
+ EL G MW++
Sbjct: 189 VTTFELPGCYDMWTV 203
Score = 56 (24.8 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
Identities = 17/79 (21%), Positives = 31/79 (39%)
Query: 356 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDIQKLH----IRSIPLGEHPRRICHQEQS 410
+ PF++ P L ++GEL I + +R IPL + + +S
Sbjct: 636 IDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVES 695
Query: 411 RTFAICSLKNQSCAEESEM 429
+ +A+ + N C M
Sbjct: 696 KVYAVATSTNMPCTRIPRM 714
>MGI|MGI:2679722 [details] [associations]
symbol:Cpsf1 "cleavage and polyadenylation specific factor
1" species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISO] [GO:0006378 "mRNA
polyadenylation" evidence=ISO] [GO:0006379 "mRNA cleavage"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 MGI:MGI:2679722 GO:GO:0006378
GO:GO:0003730 eggNOG:COG5161 KO:K14401 GO:GO:0005847 GO:GO:0006379
GeneTree:ENSGT00550000075040 OMA:NIGDNRY CTD:29894
HOGENOM:HOG000007904 HOVERGEN:HBG051105 OrthoDB:EOG4BCDM3
EMBL:AF322193 EMBL:BC056388 IPI:IPI00110363 RefSeq:NP_001157645.1
RefSeq:NP_444423.1 UniGene:Mm.45141 ProteinModelPortal:Q9EPU4
STRING:Q9EPU4 PhosphoSite:Q9EPU4 PaxDb:Q9EPU4 PRIDE:Q9EPU4
Ensembl:ENSMUST00000071898 GeneID:94230 KEGG:mmu:94230
UCSC:uc007wky.2 InParanoid:Q9EPU4 NextBio:352239 Bgee:Q9EPU4
CleanEx:MM_CPSF1 Genevestigator:Q9EPU4
GermOnline:ENSMUSG00000034022 Uniprot:Q9EPU4
Length = 1441
Score = 230 (86.0 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 100/376 (26%), Positives = 171/376 (45%)
Query: 426 ESEMHFVRLLDDQTFEFI--STYPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAYVL 478
+ E ++L+ ++E I + L+ +E+ + + S + V Y GT +
Sbjct: 1068 QQEAFSIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQ 1127
Query: 479 PEENEPTKGRILVFIV-----EDG------KLQLIAEKETKGAVYSLNAFNGKLLAAINQ 527
EE +GRIL+ V E G K +++ EKE KG V +L NG L++AI Q
Sbjct: 1128 GEE-VTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQ 1186
Query: 528 KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 587
KI L W LR EL + + + +FI+ D+MKSISLL Y+ E +
Sbjct: 1187 KIFL--WSLR---ASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTL 1241
Query: 588 EERARDYNANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERGRLEVVGEYH 644
+RD + +V+ + D+ LG ++ + NL E RL ++H
Sbjct: 1242 SLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFH 1301
Query: 645 LGEFVNRF-R---HGSLVMRLPDSDVGQIPTVI-FGTVNGVIGVIASLPHEQYLFLEKLQ 699
+G VN F R G+ S V + + F T++G IG++ + + Y L LQ
Sbjct: 1302 VGAHVNTFWRTPCRGAAEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQ 1361
Query: 700 TNLRKVIKGVGGLNHEQWRSFNNEKKTVD--AKNFLDGDLIESFLDLSRTRMDEISKTMN 757
L ++ GLN +R + +++ + +N LDG+L+ +L LS E++K +
Sbjct: 1362 NALTTMLPHHAGLNPRAFRMLHVDRRILQNAVRNVLDGELLNRYLYLSTMERSELAKKIG 1421
Query: 758 VSVEELCKRVEELTRL 773
+ + + + E R+
Sbjct: 1422 TTPDIILDDLLETDRV 1437
Score = 74 (31.1 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 26 EVLERYVNLGPIVDFCVVD---LERQGQG------QVVTCSGAYKDGSLRIVRNGIGINE 76
EV + +N+GP + V + L + Q ++V CSG K+G+L +++ I
Sbjct: 463 EVCDSMLNIGPCANAAVGEPAFLSEEFQNSPEPDLEIVVCSGYGKNGALSVLQKSIRPQV 522
Query: 77 QASVELQGIKGMWSL 91
+ EL G MW++
Sbjct: 523 VTTFELPGCYDMWTV 537
Score = 55 (24.4 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 17/79 (21%), Positives = 31/79 (39%)
Query: 356 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDIQKLH----IRSIPLGEHPRRICHQEQS 410
+ PF++ P L ++GEL I + +R IPL + + +S
Sbjct: 970 IDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVES 1029
Query: 411 RTFAICSLKNQSCAEESEM 429
+ +A+ + N C M
Sbjct: 1030 KVYAVATSTNTPCTRIPRM 1048
>ZFIN|ZDB-GENE-040709-2 [details] [associations]
symbol:cpsf1 "cleavage and polyadenylation specific
factor 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IMP] [GO:0060216
"definitive hemopoiesis" evidence=IMP] InterPro:IPR004871
Pfam:PF03178 ZFIN:ZDB-GENE-040709-2 GO:GO:0005634 GO:GO:0006378
GO:GO:0003676 GeneTree:ENSGT00550000075040 GO:GO:0060216
EMBL:CU467825 IPI:IPI00932321 Ensembl:ENSDART00000110017
ArrayExpress:F1QCJ8 Bgee:F1QCJ8 Uniprot:F1QCJ8
Length = 1451
Score = 226 (84.6 bits), Expect = 8.4e-18, Sum P(3) = 8.4e-18
Identities = 90/326 (27%), Positives = 157/326 (48%)
Query: 469 YYCVGTAYVLPEENEPTKGRILVFIV-----EDG------KLQLIAEKETKGAVYSLNAF 517
Y +GT + EE +GRIL+ V E G K +++ EKE KG V +L
Sbjct: 1128 YVALGTCLMQGEE-VTCRGRILILDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHC 1186
Query: 518 NGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISL 577
+G L++AI QKI L W L+D+ + + +I +Y + +FI+ D+MKSISL
Sbjct: 1187 SGFLVSAIGQKIFL--WSLKDNDLTGM-AFIDTQLYIHQMY--SIKNFILAADVMKSISL 1241
Query: 578 LIYKHEEGAIEERARDYNANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEER 634
L Y+ E + +RD + ++E + D+ LG ++ + NL E
Sbjct: 1242 LRYQPESKTLSLVSRDAKPLEVYSIEFMVDNNQLGFLVSDRDKNLMVYMYLPEAKESFGG 1301
Query: 635 GRLEVVGEYHLGEFVNRF-R---HGSLVMRLPDSDVGQIPTVI-FGTVNGVIGVIASLPH 689
RL ++++G VN F R G+L + + F T++G +G++ +
Sbjct: 1302 MRLLRRADFNVGSHVNAFWRMPCRGTLDTANKKALTWDNKHITWFATLDGGVGLLLPMQE 1361
Query: 690 EQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVD--AKNFLDGDLIESFLDLSRT 747
+ Y L LQ L ++ GLN + +R + +++T+ KN LDG+L+ +L LS
Sbjct: 1362 KTYRRLLMLQNALTTMLPHHAGLNPKAFRMLHCDRRTLQNAVKNILDGELLNKYLYLSTM 1421
Query: 748 RMDEISKTMNVSVEELCKRVEELTRL 773
E++K + + + + + E+ R+
Sbjct: 1422 ERSELAKKIGTTPDIILDDLLEIERV 1447
Score = 70 (29.7 bits), Expect = 8.4e-18, Sum P(3) = 8.4e-18
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 52 QVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDP 98
+VV CSG K+G+L +++ I + EL G MW++ + P
Sbjct: 501 EVVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCHDMWTVIYCEEKP 547
Score = 61 (26.5 bits), Expect = 8.4e-18, Sum P(3) = 8.4e-18
Identities = 18/79 (22%), Positives = 32/79 (40%)
Query: 356 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDIQKLH----IRSIPLGEHPRRICHQEQS 410
+ PF++ P L K+GEL I + +R IPL + + +S
Sbjct: 980 IESFSPFHNINCPKGFLYFNKQGELRISVLPTYLSYDAPWPVRKIPLRCTVHYVSYHVES 1039
Query: 411 RTFAICSLKNQSCAEESEM 429
+ +A+C+ + C M
Sbjct: 1040 KVYAVCTSVKEPCTRIPRM 1058
>UNIPROTKB|F1PC28 [details] [associations]
symbol:CPSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0006378 GO:GO:0003730
GO:GO:0005847 GO:GO:0006379 GeneTree:ENSGT00550000075040
OMA:NIGDNRY EMBL:AAEX03008966 ProteinModelPortal:F1PC28
Ensembl:ENSCAFT00000002514 Uniprot:F1PC28
Length = 1398
Score = 229 (85.7 bits), Expect = 8.9e-18, Sum P(3) = 8.9e-18
Identities = 100/376 (26%), Positives = 171/376 (45%)
Query: 426 ESEMHFVRLLDDQTFEFI--STYPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAYVL 478
+ E ++L+ ++E I + L+ +E+ + + S + V Y GT +
Sbjct: 1025 QQEAFSIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQ 1084
Query: 479 PEENEPTKGRILVFIV-----EDG------KLQLIAEKETKGAVYSLNAFNGKLLAAINQ 527
EE +GRIL+ V E G K +++ EKE KG V +L NG L++AI Q
Sbjct: 1085 GEE-VTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQ 1143
Query: 528 KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 587
KI L W LR EL + + + +FI+ D+MKSISLL Y+ E +
Sbjct: 1144 KIFL--WSLR---ASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTL 1198
Query: 588 EERARDYNANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERGRLEVVGEYH 644
+RD + +V+ + D+ LG ++ + NL E RL ++H
Sbjct: 1199 SLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFH 1258
Query: 645 LGEFVNRF-R---HGSLVMRLPDSDVGQIPTVI-FGTVNGVIGVIASLPHEQYLFLEKLQ 699
+G VN F R G+ S V + + F T++G IG++ + + Y L LQ
Sbjct: 1259 VGAHVNTFWRTPCRGAAEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQ 1318
Query: 700 TNLRKVIKGVGGLNHEQWRSFNNEKKTVD--AKNFLDGDLIESFLDLSRTRMDEISKTMN 757
L ++ GLN +R + +++ + +N LDG+L+ +L LS E++K +
Sbjct: 1319 NALTTMLPHHAGLNPRAFRMLHVDRRILQNAVRNVLDGELLNRYLYLSTMERGELAKKIG 1378
Query: 758 VSVEELCKRVEELTRL 773
+ + + + E R+
Sbjct: 1379 TTPDIILDDLLETDRV 1394
Score = 71 (30.1 bits), Expect = 8.9e-18, Sum P(3) = 8.9e-18
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 26 EVLERYVNLGPIVDFCVVD---LERQGQG------QVVTCSGAYKDGSLRIVRNGIGINE 76
EV + +N+GP + + + L + Q ++V CSG K+G+L +++ I
Sbjct: 420 EVCDSILNIGPCANAAMGEPAFLSEEFQNSPEPDLEIVVCSGYGKNGALSVLQKSIRPQV 479
Query: 77 QASVELQGIKGMWSL 91
+ EL G MW++
Sbjct: 480 VTTFELPGCYDMWTV 494
Score = 56 (24.8 bits), Expect = 8.9e-18, Sum P(3) = 8.9e-18
Identities = 17/79 (21%), Positives = 31/79 (39%)
Query: 356 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDIQKLH----IRSIPLGEHPRRICHQEQS 410
+ PF++ P L ++GEL I + +R IPL + + +S
Sbjct: 927 IDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVES 986
Query: 411 RTFAICSLKNQSCAEESEM 429
+ +A+ + N C M
Sbjct: 987 KVYAVATSTNMPCTRIPRM 1005
>WB|WBGene00022301 [details] [associations]
symbol:cpsf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006378 GO:GO:0010171 GO:GO:0040018
GO:GO:0000003 GO:GO:0003723 GO:GO:0040027 eggNOG:COG5161 KO:K14401
GO:GO:0005847 GO:GO:0006379 GeneTree:ENSGT00550000075040
OMA:NIGDNRY HOGENOM:HOG000007904 EMBL:FO081666 RefSeq:NP_500157.2
ProteinModelPortal:Q9N4C2 MINT:MINT-3384281 STRING:Q9N4C2
PaxDb:Q9N4C2 EnsemblMetazoa:Y76B12C.7.1 EnsemblMetazoa:Y76B12C.7.2
GeneID:177003 KEGG:cel:CELE_Y76B12C.7 CTD:177003 WormBase:Y76B12C.7
InParanoid:Q9N4C2 NextBio:894932 Uniprot:Q9N4C2
Length = 1454
Score = 214 (80.4 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 81/314 (25%), Positives = 152/314 (48%)
Query: 477 VLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWML 536
V+PE ++PT R K++++ +KE KG V L A NG LL + QK+ + W
Sbjct: 1153 VVPEPDQPTSNR---------KIKVLFDKEQKGPVTGLCAINGLLLCGMGQKV--FIWQF 1201
Query: 537 RDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYN- 595
+D+ + S H ++ L+ + + D +S+SL+ ++ + A+ +RD
Sbjct: 1202 KDNDLMGI-SFLDMHYYVYQLH--SLRTIAIACDARESMSLIRFQEDNKAMSIASRDDRK 1258
Query: 596 -ANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERG-RLEVVGEYHLGEFVN 650
A A +++ D ++G ++ N+ T+ + A + G RL V ++G +N
Sbjct: 1259 CAQPPMASQLVVDGAHVGFLLSDETGNI-TMFNYAPEAPESNGGERLTVRAAINIGTNIN 1317
Query: 651 RF-R---HGSLVMRLPDSD----VGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNL 702
F R H SL ++L + D + Q T +F +++G G + L + Y L LQT +
Sbjct: 1318 AFVRLRGHTSL-LQLNNEDEKEAIEQRMTTVFASLDGSFGFVRPLTEKSYRRLHFLQTFI 1376
Query: 703 RKVIKGVGGLNHEQWRSFNNEKKTVD---AKNFLDGDLIESFLDLSRTRMDEISKTMNVS 759
V + GL+ + RS + V+ A+N +DGD++E +L LS ++++ + V
Sbjct: 1377 GSVTPQIAGLHIKGSRSAKPSQPIVNGRNARNLIDGDVVEQYLHLSLYDKTDLARRLGVG 1436
Query: 760 VEELCKRVEELTRL 773
+ + +L R+
Sbjct: 1437 RYHIIDDLMQLRRM 1450
Score = 92 (37.4 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 58/234 (24%), Positives = 99/234 (42%)
Query: 28 LERYVNLGPIVDFCV----------VDLERQGQG-QVVTCSGAYKDGSLRIVRNGIGINE 76
L+R N+GP+ CV VD +R+ +VT SG K+G+L + + +
Sbjct: 443 LDRLRNVGPVKSMCVGRPNYMSNDLVDAKRRDPVFDLVTASGHGKNGALCVHQRSLRPEI 502
Query: 77 QASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQT 136
S L+G + +W++ ++ +L+VS + T IL L F + T
Sbjct: 503 ITSSLLEGAEQLWAVGRKENESHK-YLIVSRVRSTLIL--ELGEELVELEEQLFVTGEPT 559
Query: 137 LFCHDAIYNQL-VQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGH 195
+ + L VQVTS + LV T + E + V A+ V L T G
Sbjct: 560 VAAGELSQGALAVQVTSTCIALV--TDGQQMQEVHIDSNFPVIQASIVDPYVALLTQNGR 617
Query: 196 LVYLEIGDGILTEVKHAQL-EYEISCLDI---NPIGENPSYSQIAAVGMWTDIS 245
L+ E+ + E + QL E +IS + +N +Q+ ++ ++ D S
Sbjct: 618 LLLYEL----VME-PYVQLREVDISATSFATWHATAQN--LTQLTSISIYADAS 664
>UNIPROTKB|Q9N4C2 [details] [associations]
symbol:cpsf-1 "Probable cleavage and polyadenylation
specificity factor subunit 1" species:6239 "Caenorhabditis elegans"
[GO:0006378 "mRNA polyadenylation" evidence=NAS] [GO:0006379 "mRNA
cleavage" evidence=NAS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=NAS]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006378 GO:GO:0010171 GO:GO:0040018
GO:GO:0000003 GO:GO:0003723 GO:GO:0040027 eggNOG:COG5161 KO:K14401
GO:GO:0005847 GO:GO:0006379 GeneTree:ENSGT00550000075040
OMA:NIGDNRY HOGENOM:HOG000007904 EMBL:FO081666 RefSeq:NP_500157.2
ProteinModelPortal:Q9N4C2 MINT:MINT-3384281 STRING:Q9N4C2
PaxDb:Q9N4C2 EnsemblMetazoa:Y76B12C.7.1 EnsemblMetazoa:Y76B12C.7.2
GeneID:177003 KEGG:cel:CELE_Y76B12C.7 CTD:177003 WormBase:Y76B12C.7
InParanoid:Q9N4C2 NextBio:894932 Uniprot:Q9N4C2
Length = 1454
Score = 214 (80.4 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 81/314 (25%), Positives = 152/314 (48%)
Query: 477 VLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWML 536
V+PE ++PT R K++++ +KE KG V L A NG LL + QK+ + W
Sbjct: 1153 VVPEPDQPTSNR---------KIKVLFDKEQKGPVTGLCAINGLLLCGMGQKV--FIWQF 1201
Query: 537 RDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYN- 595
+D+ + S H ++ L+ + + D +S+SL+ ++ + A+ +RD
Sbjct: 1202 KDNDLMGI-SFLDMHYYVYQLH--SLRTIAIACDARESMSLIRFQEDNKAMSIASRDDRK 1258
Query: 596 -ANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERG-RLEVVGEYHLGEFVN 650
A A +++ D ++G ++ N+ T+ + A + G RL V ++G +N
Sbjct: 1259 CAQPPMASQLVVDGAHVGFLLSDETGNI-TMFNYAPEAPESNGGERLTVRAAINIGTNIN 1317
Query: 651 RF-R---HGSLVMRLPDSD----VGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNL 702
F R H SL ++L + D + Q T +F +++G G + L + Y L LQT +
Sbjct: 1318 AFVRLRGHTSL-LQLNNEDEKEAIEQRMTTVFASLDGSFGFVRPLTEKSYRRLHFLQTFI 1376
Query: 703 RKVIKGVGGLNHEQWRSFNNEKKTVD---AKNFLDGDLIESFLDLSRTRMDEISKTMNVS 759
V + GL+ + RS + V+ A+N +DGD++E +L LS ++++ + V
Sbjct: 1377 GSVTPQIAGLHIKGSRSAKPSQPIVNGRNARNLIDGDVVEQYLHLSLYDKTDLARRLGVG 1436
Query: 760 VEELCKRVEELTRL 773
+ + +L R+
Sbjct: 1437 RYHIIDDLMQLRRM 1450
Score = 92 (37.4 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 58/234 (24%), Positives = 99/234 (42%)
Query: 28 LERYVNLGPIVDFCV----------VDLERQGQG-QVVTCSGAYKDGSLRIVRNGIGINE 76
L+R N+GP+ CV VD +R+ +VT SG K+G+L + + +
Sbjct: 443 LDRLRNVGPVKSMCVGRPNYMSNDLVDAKRRDPVFDLVTASGHGKNGALCVHQRSLRPEI 502
Query: 77 QASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQT 136
S L+G + +W++ ++ +L+VS + T IL L F + T
Sbjct: 503 ITSSLLEGAEQLWAVGRKENESHK-YLIVSRVRSTLIL--ELGEELVELEEQLFVTGEPT 559
Query: 137 LFCHDAIYNQL-VQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGH 195
+ + L VQVTS + LV T + E + V A+ V L T G
Sbjct: 560 VAAGELSQGALAVQVTSTCIALV--TDGQQMQEVHIDSNFPVIQASIVDPYVALLTQNGR 617
Query: 196 LVYLEIGDGILTEVKHAQL-EYEISCLDI---NPIGENPSYSQIAAVGMWTDIS 245
L+ E+ + E + QL E +IS + +N +Q+ ++ ++ D S
Sbjct: 618 LLLYEL----VME-PYVQLREVDISATSFATWHATAQN--LTQLTSISIYADAS 664
>TAIR|locus:2153122 [details] [associations]
symbol:CPSF160 "cleavage and polyadenylation specificity
factor 160" species:3702 "Arabidopsis thaliana" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=RCA] [GO:0009909 "regulation
of flower development" evidence=RCA] [GO:0016570 "histone
modification" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] InterPro:IPR004871 Pfam:PF03178 GO:GO:0005829
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
GO:GO:0003723 eggNOG:COG5161 KO:K14401 EMBL:AY140902 EMBL:AB025607
EMBL:AB018109 IPI:IPI00533913 RefSeq:NP_199979.2 UniGene:At.43551
IntAct:Q9FGR0 STRING:Q9FGR0 PaxDb:Q9FGR0 PRIDE:Q9FGR0
EnsemblPlants:AT5G51660.1 GeneID:835240 KEGG:ath:AT5G51660
TAIR:At5g51660 HOGENOM:HOG000265012 InParanoid:Q9FGR0 OMA:NIGDNRY
PhylomeDB:Q9FGR0 ProtClustDB:CLSN2680511 Genevestigator:Q9FGR0
GermOnline:AT5G51660 Uniprot:Q9FGR0
Length = 1442
Score = 208 (78.3 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 81/295 (27%), Positives = 135/295 (45%)
Query: 447 PLDTFEYGCSI----LSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE---DGKL 499
P+ T E+ ++ L + + ++ VGTAYV E+ +GR+L+F D
Sbjct: 1104 PMQTSEHALTVRVVTLLNASTGENETLLAVGTAYVQGED-VAARGRVLLFSFGKNGDNSQ 1162
Query: 500 QLIAE---KETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILA 556
++ E +E KGA+ ++ + G LL + KI L+KW +GT EL
Sbjct: 1163 NVVTEVYSRELKGAISAVASIQGHLLISSGPKIILHKW----NGT-ELNGVAFFDAP--P 1215
Query: 557 LYVQTRG---DFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD--IYL 611
LYV + FI++GD+ KSI L +K + + A+D+ + A E L D + L
Sbjct: 1216 LYVVSMNVVKSFILLGDVHKSIYFLSWKEQGSQLSLLAKDFESLDCFATEFLIDGSTLSL 1275
Query: 612 GAENNFNLFTVRKNSEGATDEERG-RLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIP 670
+ V + + +G +L E+H+G V++F +V D + +
Sbjct: 1276 AVSDEQKNIQVFYYAPKMIESWKGLKLLSRAEFHVGAHVSKFLRLQMVSSGADK-INRF- 1333
Query: 671 TVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKK 725
++FGT++G G IA L + L+ LQ L + V GLN +R F + K
Sbjct: 1334 ALLFGTLDGSFGCIAPLDEVTFRRLQSLQKKLVDAVPHVAGLNPLAFRQFRSSGK 1388
Score = 98 (39.6 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 34/125 (27%), Positives = 58/125 (46%)
Query: 15 NLQPDAKGSY-VEVLERYVNLGPIVDFC----------VVDLERQGQGQVVTCSGAYKDG 63
N A+ S+ V + VN+GP+ DF + +Q ++V CSG K+G
Sbjct: 494 NNSDSAQKSFSFAVRDSLVNVGPVKDFAYGLRINADANATGVSKQSNYELVCCSGHGKNG 553
Query: 64 SLRIVRNGIGINEQASVELQGIKGMWSL--RSST------------DDPFDTFLVVSFIS 109
+L ++R I VEL G KG+W++ +SS +D + +L++S +
Sbjct: 554 ALCVLRQSIRPEMITEVELPGCKGIWTVYHKSSRGHNADSSKMAADEDEYHAYLIISLEA 613
Query: 110 ETRIL 114
T +L
Sbjct: 614 RTMVL 618
>UNIPROTKB|Q10569 [details] [associations]
symbol:CPSF1 "Cleavage and polyadenylation specificity
factor subunit 1" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
GO:GO:0006378 GO:GO:0003730 eggNOG:COG5161 KO:K14401 GO:GO:0005847
GO:GO:0006379 GeneTree:ENSGT00550000075040 OMA:NIGDNRY EMBL:X83097
IPI:IPI00713487 PIR:S57335 RefSeq:NP_777145.1 UniGene:Bt.4911
STRING:Q10569 PRIDE:Q10569 Ensembl:ENSBTAT00000011004 GeneID:282703
KEGG:bta:282703 CTD:29894 HOGENOM:HOG000007904 HOVERGEN:HBG051105
InParanoid:Q10569 OrthoDB:EOG4BCDM3 NextBio:20806363
ArrayExpress:Q10569 Uniprot:Q10569
Length = 1444
Score = 230 (86.0 bits), Expect = 3.2e-17, Sum P(3) = 3.2e-17
Identities = 100/376 (26%), Positives = 171/376 (45%)
Query: 426 ESEMHFVRLLDDQTFEFI--STYPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAYVL 478
+ E ++L+ ++E I + L+ +E+ + + S + V Y GT +
Sbjct: 1071 QQEAFCIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQ 1130
Query: 479 PEENEPTKGRILVFIV-----EDG------KLQLIAEKETKGAVYSLNAFNGKLLAAINQ 527
EE +GRIL+ V E G K +++ EKE KG V +L NG L++AI Q
Sbjct: 1131 GEE-VTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQ 1189
Query: 528 KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 587
KI L W LR EL + + + +FI+ D+MKSISLL Y+ E +
Sbjct: 1190 KIFL--WSLR---ASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTL 1244
Query: 588 EERARDYNANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERGRLEVVGEYH 644
+RD + +V+ + D+ LG ++ + NL E RL ++H
Sbjct: 1245 SLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFH 1304
Query: 645 LGEFVNRF-R---HGSLVMRLPDSDVGQIPTVI-FGTVNGVIGVIASLPHEQYLFLEKLQ 699
+G VN F R G+ S V + + F T++G IG++ + + Y L LQ
Sbjct: 1305 VGAHVNTFWRTPCRGAAEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQ 1364
Query: 700 TNLRKVIKGVGGLNHEQWRSFNNEKKTVD--AKNFLDGDLIESFLDLSRTRMDEISKTMN 757
L ++ GLN +R + +++ + +N LDG+L+ +L LS E++K +
Sbjct: 1365 NALTTMLPHHAGLNPRAFRMLHVDRRVLQNAVRNVLDGELLNRYLYLSTMERGELAKKIG 1424
Query: 758 VSVEELCKRVEELTRL 773
+ + + + E R+
Sbjct: 1425 TTPDIILDDLLETDRV 1440
Score = 71 (30.1 bits), Expect = 3.2e-17, Sum P(3) = 3.2e-17
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 26 EVLERYVNLGPIVDFCVVD---LERQGQG------QVVTCSGAYKDGSLRIVRNGIGINE 76
EV + +N+GP + + + L + Q ++V CSG K+G+L +++ I
Sbjct: 466 EVCDSILNIGPCANAAMGEPAFLSEEFQNSPEPDLEIVVCSGYGKNGALSVLQKSIRPQV 525
Query: 77 QASVELQGIKGMWSL 91
+ EL G MW++
Sbjct: 526 VTTFELPGCYDMWTV 540
Score = 50 (22.7 bits), Expect = 3.2e-17, Sum P(3) = 3.2e-17
Identities = 16/79 (20%), Positives = 31/79 (39%)
Query: 356 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDIQKLH----IRSIPLGEHPRRICHQEQS 410
+ PF++ P L ++GEL I + +R IPL + + +S
Sbjct: 973 IDSFAPFHNINCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVES 1032
Query: 411 RTFAICSLKNQSCAEESEM 429
+ +A+ + + C M
Sbjct: 1033 KVYAVATSTSTPCTRVPRM 1051
>DICTYBASE|DDB_G0281585 [details] [associations]
symbol:cpsf1 "cleavage and polyadenylation
specificity factor 160 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] InterPro:IPR004871 Pfam:PF03178
dictyBase:DDB_G0281585 GenomeReviews:CM000152_GR GO:GO:0006378
EMBL:AAFI02000042 GO:GO:0003730 eggNOG:COG5161 KO:K14401
GO:GO:0005847 GO:GO:0006379 RefSeq:XP_640515.1
EnsemblProtists:DDB0233702 GeneID:8623125 KEGG:ddi:DDB_G0281585
InParanoid:Q54TS6 OMA:TSATIQD Uniprot:Q54TS6
Length = 1628
Score = 228 (85.3 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 99/375 (26%), Positives = 176/375 (46%)
Query: 432 VRLLD---DQTFEFISTYPLDTFE--YGCSILSCSFSDDSNV-----YYCVGTAYVLPEE 481
++L+D D ++FI ++ L E I+S F++ + + +GTA+ E+
Sbjct: 1272 IKLIDPTIDWNWKFIDSFSLQDRETVLAMKIVSLKFTEPDGITRARPFLVIGTAFTFGED 1331
Query: 482 NEPTKGRILVF-IVE-----------DGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKI 529
+ KGR+LVF IV + +L L+ EKE KG V +L++ NG LL I K+
Sbjct: 1332 TQ-CKGRVLVFEIVSHKTQFESEELGEKRLNLLYEKEQKGPVTALSSVNGLLLMTIGPKL 1390
Query: 530 QLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEE 589
+ ++ T L + + I + T ++IV+GD+ KS+ L +K + +
Sbjct: 1391 TVNQFY-----TGSLVTLSFYDAQIYICSICTIKNYIVIGDMYKSVYFLQWKDNK-TLNL 1444
Query: 590 RARDYNA-NWMSAVEILDDD----IYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYH 644
++DY A N S I++ + + N LF+ + + + E+ G
Sbjct: 1445 LSKDYQALNIFSTEFIVNQKTLSILVSDLDKNILLFSFEPQDPSSRSGQINQ-EINGN-- 1501
Query: 645 LGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRK 704
N+ + RLP + Q+ VIFGT++G + V+ L + YL +Q+ L
Sbjct: 1502 -----NKNDN-----RLPKKE--QL--VIFGTLDGGLNVLRPLDEKIYLLFYHIQSKLY- 1546
Query: 705 VIKGVGGLNHEQWRSFNNEKKTVD---------AKNFLDGDLIESFLDLSRTRMDEISKT 755
+ GLN +Q+RSF + + K LDGDLI FL LS++ IS +
Sbjct: 1547 YLPQTAGLNPKQYRSFKSFSQNFHFSPSTFHQLPKFILDGDLISKFLSLSQSEKRLISNS 1606
Query: 756 MNVSVEELCKRVEEL 770
+N + +E+ + ++++
Sbjct: 1607 INSTSDEIIESLKDV 1621
Score = 77 (32.2 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 52 QVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSL 91
++VTCSG K+GS+ +++N I + EL GI +W++
Sbjct: 618 ELVTCSGYGKNGSISVLQNNIKPELVMAFELPGILNVWTV 657
Score = 43 (20.2 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 188 LLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQI 235
+ T G + +Y + +V + EY+I ++ N + +N Q+
Sbjct: 940 IYTTNGSYEIYRLTSQECIFKVSDIKFEYDILGINTN-VSQNQILEQV 986
Score = 43 (20.2 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 69 RNGIGINEQASVELQGIKGMWSLRSSTDD 97
R G+ +NE AS++ I G DD
Sbjct: 379 RYGLAVNEYASIDTSTIIGSQPFDFPIDD 407
>UNIPROTKB|F1NZF7 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
GO:GO:0005634 GO:GO:0003676 GeneTree:ENSGT00530000063396
EMBL:AADN02051593 EMBL:AADN02051594 IPI:IPI00819465
Ensembl:ENSGALT00000040057 ArrayExpress:F1NZF7 Uniprot:F1NZF7
Length = 504
Score = 234 (87.4 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 86/364 (23%), Positives = 167/364 (45%)
Query: 432 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC-VGTAY-VLPEENEPTKGRI 489
+R+++ + L+ E S+ C FS+ +Y VG A ++ G +
Sbjct: 152 IRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGEEWYVLVGVAKDLILNPRSVAGGFV 211
Query: 490 LVF--IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQS 546
+ +V G KL+ + + + ++ F G++L + + +++Y D G ++L
Sbjct: 212 YTYKLLVNGGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLR 266
Query: 547 ECGHHGHILALYV---QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVE 603
+C + HI A Y+ QT G ++V D+ +S + YK E + A D W++
Sbjct: 267 KC-ENKHI-ANYICGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTAT 324
Query: 604 ILDDDIYLGAENNFNLFTVR--KNSEGATDEE---------RGRLEVVGEYHLGEFVNRF 652
+LD D GA+ N+ VR N+ DE+ RG L G E + +
Sbjct: 325 LLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLN--GASQKAEVIMNY 382
Query: 653 RHGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVIASLP-HEQYLFLEKLQTNLRKVIKGV 709
G V+ L + + G ++++ T++G IG++ HE + F + ++ +LR +
Sbjct: 383 HVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPL 442
Query: 710 GGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEE 769
G +H +RS+ KN +DGDL E F + + +++ ++ + E+ K++E+
Sbjct: 443 CGRDHLSFRSYY-----FPVKNVIDGDLCEQFNSMEPNKQKNVAEELDRTPPEVSKKLED 497
Query: 770 L-TR 772
+ TR
Sbjct: 498 IRTR 501
>UNIPROTKB|K7GNU1 [details] [associations]
symbol:CPSF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
GeneTree:ENSGT00550000075040 EMBL:CU468594
Ensembl:ENSSSCT00000033207 Uniprot:K7GNU1
Length = 757
Score = 229 (85.7 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
Identities = 100/376 (26%), Positives = 171/376 (45%)
Query: 426 ESEMHFVRLLDDQTFEFI--STYPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAYVL 478
+ E ++L+ ++E I + L+ +E+ + + S + V Y GT +
Sbjct: 384 QQEAFSIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQ 443
Query: 479 PEENEPTKGRILVFIV-----EDG------KLQLIAEKETKGAVYSLNAFNGKLLAAINQ 527
EE +GRIL+ V E G K +++ EKE KG V +L NG L++AI Q
Sbjct: 444 GEE-VTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQ 502
Query: 528 KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 587
KI L W LR EL + + + +FI+ D+MKSISLL Y+ E +
Sbjct: 503 KIFL--WSLR---ASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTL 557
Query: 588 EERARDYNANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERGRLEVVGEYH 644
+RD + +V+ + D+ LG ++ + NL E RL ++H
Sbjct: 558 SLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFH 617
Query: 645 LGEFVNRF-R---HGSLVMRLPDSDVGQIPTVI-FGTVNGVIGVIASLPHEQYLFLEKLQ 699
+G VN F R G+ S V + + F T++G IG++ + + Y L LQ
Sbjct: 618 VGAHVNTFWRTPCRGATDGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQ 677
Query: 700 TNLRKVIKGVGGLNHEQWRSFNNEKKTVD--AKNFLDGDLIESFLDLSRTRMDEISKTMN 757
L ++ GLN +R + +++ + +N LDG+L+ +L LS E++K +
Sbjct: 678 NALTTMLPHHAGLNPRAFRMLHVDRRVLQNAVRNVLDGELLNRYLYLSTMERGELAKKIG 737
Query: 758 VSVEELCKRVEELTRL 773
+ + + + E R+
Sbjct: 738 TTPDIILDDLLETDRV 753
Score = 55 (24.4 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
Identities = 17/79 (21%), Positives = 31/79 (39%)
Query: 356 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDIQKLH----IRSIPLGEHPRRICHQEQS 410
+ PF++ P L ++GEL I + +R IPL + + +S
Sbjct: 286 IDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVES 345
Query: 411 RTFAICSLKNQSCAEESEM 429
+ +A+ + N C M
Sbjct: 346 KVYAVATSTNTPCTRIPRM 364
>UNIPROTKB|F1RSN8 [details] [associations]
symbol:CPSF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] InterPro:IPR004871
Pfam:PF03178 GO:GO:0006378 GO:GO:0003730 GO:GO:0005847
GO:GO:0006379 GeneTree:ENSGT00550000075040 OMA:NIGDNRY
EMBL:CU468594 Ensembl:ENSSSCT00000006486 Uniprot:F1RSN8
Length = 1108
Score = 229 (85.7 bits), Expect = 1.0e-15, Sum P(3) = 1.0e-15
Identities = 100/376 (26%), Positives = 171/376 (45%)
Query: 426 ESEMHFVRLLDDQTFEFI--STYPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAYVL 478
+ E ++L+ ++E I + L+ +E+ + + S + V Y GT +
Sbjct: 735 QQEAFSIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQ 794
Query: 479 PEENEPTKGRILVFIV-----EDG------KLQLIAEKETKGAVYSLNAFNGKLLAAINQ 527
EE +GRIL+ V E G K +++ EKE KG V +L NG L++AI Q
Sbjct: 795 GEE-VTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQ 853
Query: 528 KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 587
KI L W LR EL + + + +FI+ D+MKSISLL Y+ E +
Sbjct: 854 KIFL--WSLR---ASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTL 908
Query: 588 EERARDYNANWMSAVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERGRLEVVGEYH 644
+RD + +V+ + D+ LG ++ + NL E RL ++H
Sbjct: 909 SLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFH 968
Query: 645 LGEFVNRF-R---HGSLVMRLPDSDVGQIPTVI-FGTVNGVIGVIASLPHEQYLFLEKLQ 699
+G VN F R G+ S V + + F T++G IG++ + + Y L LQ
Sbjct: 969 VGAHVNTFWRTPCRGATDGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQ 1028
Query: 700 TNLRKVIKGVGGLNHEQWRSFNNEKKTVD--AKNFLDGDLIESFLDLSRTRMDEISKTMN 757
L ++ GLN +R + +++ + +N LDG+L+ +L LS E++K +
Sbjct: 1029 NALTTMLPHHAGLNPRAFRMLHVDRRVLQNAVRNVLDGELLNRYLYLSTMERGELAKKIG 1088
Query: 758 VSVEELCKRVEELTRL 773
+ + + + E R+
Sbjct: 1089 TTPDIILDDLLETDRV 1104
Score = 55 (24.4 bits), Expect = 1.0e-15, Sum P(3) = 1.0e-15
Identities = 17/79 (21%), Positives = 31/79 (39%)
Query: 356 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDIQKLH----IRSIPLGEHPRRICHQEQS 410
+ PF++ P L ++GEL I + +R IPL + + +S
Sbjct: 637 IDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVES 696
Query: 411 RTFAICSLKNQSCAEESEM 429
+ +A+ + N C M
Sbjct: 697 KVYAVATSTNTPCTRIPRM 715
Score = 48 (22.0 bits), Expect = 1.0e-15, Sum P(3) = 1.0e-15
Identities = 22/112 (19%), Positives = 43/112 (38%)
Query: 153 GSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHA 212
G V + + S N+ P G ++N T + L T G + L+ +
Sbjct: 278 GGVVIFAVNSLLYLNQSVPPYGVALNSLTTGTTAFPLRTQEGVRITLDCAQAAFISSQDV 337
Query: 213 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG 264
+ + P P S++ A+ ++ D+S +F+ ++ LGG
Sbjct: 338 ARPPDPAAAPTEPRPPPPQQSKVIALCVYRDVS-GMFTTESRLGGARDELGG 388
>UNIPROTKB|E1C725 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000075 "cell cycle
checkpoint" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
[GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA]
[GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IEA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0005634 GO:GO:0005737
GO:GO:0043161 GO:GO:0016055 GO:GO:0003676 GO:GO:0042787
GO:GO:0000075 GO:GO:0031464 GO:GO:0031465
GeneTree:ENSGT00530000063396 EMBL:AADN02017118 EMBL:AADN02017119
IPI:IPI00820296 Ensembl:ENSGALT00000040602 ArrayExpress:E1C725
Uniprot:E1C725
Length = 90
Score = 188 (71.2 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 42/90 (46%), Positives = 56/90 (62%)
Query: 698 LQTNLRKVIKGVGGLNHE---QWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISK 754
+Q L KVIK VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+
Sbjct: 1 MQNRLNKVIKSVGKIEHSLYATWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVA 60
Query: 755 TMNV----------SVEELCKRVEELTRLH 774
+ + +V++L K VEELTR+H
Sbjct: 61 NLQIDDGSGMKREATVDDLIKIVEELTRIH 90
>RGD|1306406 [details] [associations]
symbol:Cpsf1 "cleavage and polyadenylation specific factor 1,
160kDa" species:10116 "Rattus norvegicus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA;ISO]
[GO:0006378 "mRNA polyadenylation" evidence=IEA;ISO] [GO:0006379
"mRNA cleavage" evidence=IEA;ISO] InterPro:IPR004871 Pfam:PF03178
RGD:1306406 GO:GO:0005634 GO:GO:0003676 EMBL:CH473950 KO:K14401
GeneTree:ENSGT00550000075040 CTD:29894 IPI:IPI00949657
RefSeq:NP_001124043.1 UniGene:Rn.40455 Ensembl:ENSRNOT00000066244
GeneID:366952 KEGG:rno:366952 UCSC:RGD:1306406 NextBio:690318
Uniprot:D4A0H5
Length = 1386
Score = 161 (61.7 bits), Expect = 1.7e-11, Sum P(4) = 1.7e-11
Identities = 57/220 (25%), Positives = 104/220 (47%)
Query: 564 DFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLG---AENNFNLF 620
+FI+ D+MKSISLL Y+ E + +RD + +V+ + D+ LG ++ + NL
Sbjct: 1163 NFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLM 1222
Query: 621 TVRKNSEGATDEERGRLEVVGEYHLGEFVNRF-R---HGSLVMRLPDSDVGQIPTVI-FG 675
E RL ++H+G VN F R G+ S + + + F
Sbjct: 1223 VYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGAAEGPSKKSVMWENKHITWFA 1282
Query: 676 TVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVD--AKNFL 733
T++G IG++ + + Y L LQ L ++ GLN +R + +++ + +N L
Sbjct: 1283 TLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRILQNAVRNVL 1342
Query: 734 DGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRL 773
DG+L+ +L LS E++K + + + + + E R+
Sbjct: 1343 DGELLNRYLYLSTMERSELAKKIGTTPDIILDDLLETDRV 1382
Score = 74 (31.1 bits), Expect = 1.7e-11, Sum P(4) = 1.7e-11
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 26 EVLERYVNLGPIVDFCVVD---LERQGQGQ----VVTCSGAYKDGSLRIVRNGIGINEQA 78
EV + +N+GP + V + L + + +V CSG K+G+L +++ I
Sbjct: 461 EVCDSMLNIGPCANAAVGEPAFLSEENSPEPDLEIVVCSGYGKNGALSVLQKSIRPQVVT 520
Query: 79 SVELQGIKGMWSL 91
+ EL G MW++
Sbjct: 521 TFELPGCYDMWTV 533
Score = 55 (24.4 bits), Expect = 1.7e-11, Sum P(4) = 1.7e-11
Identities = 17/79 (21%), Positives = 31/79 (39%)
Query: 356 VSHMCPFNSAAFPDS-LAIAKEGELTIGTIDDIQKLH----IRSIPLGEHPRRICHQEQS 410
+ PF++ P L ++GEL I + +R IPL + + +S
Sbjct: 966 IDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVES 1025
Query: 411 RTFAICSLKNQSCAEESEM 429
+ +A+ + N C M
Sbjct: 1026 KVYAVATSTNTPCTRIPRM 1044
Score = 51 (23.0 bits), Expect = 1.7e-11, Sum P(4) = 1.7e-11
Identities = 24/117 (20%), Positives = 55/117 (47%)
Query: 426 ESEMHFVRLLDDQTFEFI--STYPLDTFEYGCSILSCSFSDDSNV-----YYCVGTAYVL 478
+ E ++L+ ++E I + L+ +E+ + + S + V Y GT +
Sbjct: 1064 QQEAFSIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQ 1123
Query: 479 PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAA-INQKIQLYKW 534
EE +GRI ++ + +L +A +T+ ++ + + +LAA + + I L ++
Sbjct: 1124 GEE-VTCRGRIFLWSLRASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRY 1179
>UNIPROTKB|F5H198 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
GO:GO:0005634 GO:GO:0003676 EMBL:AP003108 HGNC:HGNC:2717
ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI01014884
ProteinModelPortal:F5H198 SMR:F5H198 Ensembl:ENST00000543658
ArrayExpress:F5H198 Bgee:F5H198 Uniprot:F5H198
Length = 162
Score = 165 (63.1 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 34/84 (40%), Positives = 50/84 (59%)
Query: 410 SRTFAICSLKNQ-SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468
S+ F+ + ++ S EE E+H + ++D TFE + + EY S++SC D N
Sbjct: 79 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 138
Query: 469 YYCVGTAYVLPEENEPTKGRILVF 492
Y+ VGTA V PEE EP +GRI+VF
Sbjct: 139 YFIVGTAMVYPEEAEPKQGRIVVF 162
>SGD|S000004513 [details] [associations]
symbol:RSE1 "Protein involved in pre-mRNA splicing"
species:4932 "Saccharomyces cerevisiae" [GO:0005686 "U2 snRNP"
evidence=IDA;IPI] [GO:0000245 "spliceosomal complex assembly"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IGI;IMP;IPI] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030620 "U2 snRNA binding" evidence=IPI]
[GO:0071004 "U2-type prespliceosome" evidence=IDA]
InterPro:IPR004871 Pfam:PF03178 SGD:S000004513 EMBL:BK006946
GO:GO:0007049 EMBL:Z47816 GO:GO:0000245 GO:GO:0005686 GO:GO:0071004
GeneTree:ENSGT00530000063396 GO:GO:0030620 KO:K12830
OrthoDB:EOG4FR40R PIR:S50943 RefSeq:NP_013663.1
ProteinModelPortal:Q04693 DIP:DIP-856N IntAct:Q04693
MINT:MINT-368995 STRING:Q04693 PaxDb:Q04693 PeptideAtlas:Q04693
EnsemblFungi:YML049C GeneID:854956 KEGG:sce:YML049C CYGD:YML049c
eggNOG:KOG1898 HOGENOM:HOG000066036 OMA:DIHESVT NextBio:978033
Genevestigator:Q04693 GermOnline:YML049C Uniprot:Q04693
Length = 1361
Score = 120 (47.3 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 62/323 (19%), Positives = 135/323 (41%)
Query: 14 LNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIG 73
L +P K + +L + +NL P + +V + + + + + + N +
Sbjct: 464 LVFEPSIKLQNLSILSQQLNLNPSIKSQIVS-----DSPLSIATKHFTNNKIITLTNAVN 518
Query: 74 INEQASVELQ-GIKGMWSLRS-STDDPFDTFLVVSFISETRILAMN---LXXXXXXXXXX 128
+ S L +W + +T +T L ++F +T IL ++ +
Sbjct: 519 YSNLISTSLPPNATKLWLIPDPATTGDNNTLLFITFPKKTMILQIDNESMEELTPDEATR 578
Query: 129 GFCSQTQTLFCHDAIY--NQLVQVTSGSVRLVSSTSRE-LRNE--WKSPPGYSVNVATAN 183
+Q H + + ++QV + +R + T + N+ W P G + AT++
Sbjct: 579 SAFKLSQDTTIHTCLMGSHSIIQVCTAELRHIVPTGKSRYSNKLTWVPPAGIRIVCATSS 638
Query: 184 ASQVLLATGGGHLVYLEI---GDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGM 240
+Q++++ LVY +I D ++ H +L+ S + I ++ ++ + A+
Sbjct: 639 KTQLIISLSNYELVYFKIDVSSDSLIELTTHPELDTMPSKV---AIVQDTQHADLLAIAD 695
Query: 241 WTDISVRIFSLPD-----LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFL 295
+ ++I SL D L +I+ + + +I ++ + G L L +G + F
Sbjct: 696 -NEGMIKIMSLKDQKEDFLTVISLQLVSEKISDMIMVRDSSIGQLNLHVGLENGVYMKFH 754
Query: 296 LNMKTGELTDRKKVSLGTQPITL 318
+ G TD K+ LG +P++L
Sbjct: 755 IGDVDGSFTDIKRRFLGLKPVSL 777
Score = 81 (33.6 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 711 GLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTM-NVSVEELCKRVEE 769
G +H+++RS+ + V +DGDL E+FL LS + ++K + +V VE++ + + E
Sbjct: 1301 GRDHQEYRSYYAPVRKV-----IDGDLCENFLRLSLNEQEFLAKNLKSVQVEDIIQTINE 1355
Query: 770 L 770
+
Sbjct: 1356 V 1356
Score = 80 (33.2 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 31/133 (23%), Positives = 62/133 (46%)
Query: 499 LQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLY----KWMLRDDGTRELQSECGHHGHI 554
++L+ + E ++++ F LL A+ I LY K +LR T+ S I
Sbjct: 1019 IELLHQTEIISPIHAMLKFKNFLLTAMGSTIVLYGLGKKQLLRRSVTQTPVSIT----KI 1074
Query: 555 LALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAE 614
++++ Q + + VGD+ +S++L I+ D ++ ++ LD+ +GA+
Sbjct: 1075 VSMH-QWNYERLAVGDIHESVTLFIWDPAGNVFIPYVDDSVKRHVTVLKFLDEATVIGAD 1133
Query: 615 NNFNLFTVRKNSE 627
N +T+R E
Sbjct: 1134 RYGNAWTLRSPPE 1146
Score = 37 (18.1 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 588 EERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRK 624
EE A WMS V ++ N++T+R+
Sbjct: 805 EEEINSSGAKWMSCVVCHSSSTWVSYTWK-NVWTIRQ 840
>UNIPROTKB|F1S419 [details] [associations]
symbol:LOC100512659 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004871
Pfam:PF03178 GO:GO:0005634 GO:GO:0003676
GeneTree:ENSGT00530000063396 EMBL:CU915803 EMBL:AEMK01191757
Ensembl:ENSSSCT00000003019 OMA:SHEVIYS Uniprot:F1S419
Length = 319
Score = 164 (62.8 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 64/283 (22%), Positives = 127/283 (44%)
Query: 432 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC-VGTAY-VLPEENEPTKGRI 489
+R+++ + L+ E S+ C FS+ + +Y VG A ++ G +
Sbjct: 44 IRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGDDWYVLVGVAKDLILNPRSVAGGFV 103
Query: 490 LVF-IVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSE 547
+ +V +G KL+ + + + ++ F G++L + + +++Y D G ++L +
Sbjct: 104 YTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVY-----DLGKKKLLRK 158
Query: 548 CGHHGHILALYV---QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEI 604
C + HI A Y+ QT G ++V D+ +S + YK E + A D W++ +
Sbjct: 159 C-ENKHI-ANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASL 216
Query: 605 LDDDIYLGAENNFNLFTVR--KNSEGATDEE---------RGRLEVVGEYHLGEFVNRFR 653
LD D GA+ N+ VR N+ DE+ RG L G E + +
Sbjct: 217 LDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLN--GASQKAEVIMNYH 274
Query: 654 HGSLVMRLPDSDV--GQIPTVIFGTVNGVIGVIASLPHEQYLF 694
G V+ L + + G ++++ T++G IG++ + ++
Sbjct: 275 VGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEVIY 317
>ASPGD|ASPL0000050546 [details] [associations]
symbol:AN1413 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004871
Pfam:PF03178 GO:GO:0005634 EMBL:BN001307 GO:GO:0006397
GO:GO:0003723 eggNOG:COG5161 KO:K14401 EMBL:AACD01000022
RefSeq:XP_659017.1 EnsemblFungi:CADANIAT00008024 GeneID:2875502
KEGG:ani:AN1413.2 HOGENOM:HOG000048586 OMA:HNDRIFQ
OrthoDB:EOG451HZS Uniprot:Q5BDG7
Length = 1339
Score = 168 (64.2 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 69/291 (23%), Positives = 135/291 (46%)
Query: 498 KLQLIAEKETKGAVYSLNAFNGK--LLAAINQKIQLYKWMLRDDGTRELQSECGHHGHIL 555
+L+LI ++ KGAV +L+ G+ L+AA QK + L++DG+ L +
Sbjct: 1047 RLKLIGKEPVKGAVTALSEIGGQGFLIAAQGQKSMVRG--LKEDGSL-LPVAFMDMQCFV 1103
Query: 556 ALYVQTRGD-FIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD--IYLG 612
++ + +G + GD +K + Y E + A+D + + A + L D +++
Sbjct: 1104 SVIKELKGTGMCIFGDAVKGLWFAGYSEEPYKMSLFAKDLDYLEVLAADFLPDGNKLFIV 1163
Query: 613 -AENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFR--HGSLVMR---LPDSDV 666
A+++ NL+ ++ + E +L ++H G F + +LV + SD
Sbjct: 1164 VADSDCNLYVLQYDPEDPNSSNGDKLLNRSKFHTGNFASTVTLLPRTLVSSERAMSGSDK 1223
Query: 667 GQIPT------VIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSF 720
I V+ + NG IG++ +P E Y L LQ+ L ++ GLN +R+
Sbjct: 1224 MDIDNTAPLHQVLVTSHNGSIGLVTCVPEESYRRLSALQSQLTNTLEHPCGLNPRAYRAV 1283
Query: 721 NNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELT 771
++ + LD +L+ +LD+S+ R EI+ + + E+ +E ++
Sbjct: 1284 ESDASA--GRGMLDSNLLLQYLDMSKQRKAEIAGRVGATEWEIRADLEAIS 1332
Score = 45 (20.9 bits), Expect = 5.3e-07, Sum P(3) = 5.3e-07
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 392 IRSIPLGEHPRRICHQEQSRTFAI--CSLKNQSCAEESEMH 430
+R++P+G+ ++ + S T+ + C E+ E+H
Sbjct: 907 MRTVPIGQQIDKLTYVSASDTYVLGTCQRCEFRLPEDDELH 947
Score = 44 (20.5 bits), Expect = 6.7e-07, Sum P(3) = 6.7e-07
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 477 VLPEENEPTKGRILVFIVEDGKLQLIAEKE 506
+L ++ +P K VF++ED KL+ I E
Sbjct: 574 ILSKQEKPDKEESEVFVLED-KLRPITAPE 602
Score = 40 (19.1 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 406 HQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQ 438
+ +Q R + I S + + EESE+ FV L+D+
Sbjct: 565 NNDQKRDYVILSKQEKPDKEESEV-FV--LEDK 594
Score = 39 (18.8 bits), Expect = 5.3e-07, Sum P(3) = 5.3e-07
Identities = 12/62 (19%), Positives = 29/62 (46%)
Query: 47 RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMW--SLRSSTDDPFDTFLV 104
+ G ++V G+ + G++ I++ + AS+ +W SL +D +++
Sbjct: 515 KDGVLELVAAQGSDEGGTMVIMKREVDPYLVASMAADTANSLWTVSLLPDNNDQKRDYVI 574
Query: 105 VS 106
+S
Sbjct: 575 LS 576
>POMBASE|SPBC1709.08 [details] [associations]
symbol:cft1 "cleavage factor one Cft1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=ISO]
[GO:0006378 "mRNA polyadenylation" evidence=ISO] [GO:0006379 "mRNA
cleavage" evidence=ISO] InterPro:IPR004871 Pfam:PF03178
PomBase:SPBC1709.08 GO:GO:0005829 EMBL:CU329671 GO:GO:0006378
GenomeReviews:CU329671_GR GO:GO:0003723 eggNOG:COG5161 KO:K14401
OMA:HNDRIFQ OrthoDB:EOG451HZS PIR:T39636 RefSeq:NP_595441.1
STRING:O74733 EnsemblFungi:SPBC1709.08.1 GeneID:2539694
KEGG:spo:SPBC1709.08 NextBio:20800847 GO:GO:0005847 GO:GO:0006379
Uniprot:O74733
Length = 1441
Score = 140 (54.3 bits), Expect = 7.1e-06, Sum P(3) = 7.1e-06
Identities = 75/362 (20%), Positives = 154/362 (42%)
Query: 434 LLDDQTFEFISTYPLDTFEYGCSI--LSCSFSDDSNV---YYCVGTAYVLPEENEPTKGR 488
L+ T+ I +Y FE S+ ++ S+ + + Y VGT+ + E+ +G
Sbjct: 1079 LVSPLTWTVIDSYEFQQFEIPLSVALVNLEVSETTKLRKPYIAVGTS-ITKGEDIAVRGS 1137
Query: 489 ILVFIVED-----G------KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLR 537
+F + D G KL+L+ +E KG V + +G LL+ QK+ + + +
Sbjct: 1138 TYLFEIIDVVPQPGRPETRHKLKLVTREEIKGTVAVVCEVDGYLLSGQGQKV-IVRALED 1196
Query: 538 DDGTRELQS-ECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNA 596
+D + + G + L + + ++ GD+ ++++ + + E + ++ A
Sbjct: 1197 EDHLVGVSFIDLGSY----TLSAKCLRNLLLFGDVRQNVTFVGFAEEPYRMTLFSKGQEA 1252
Query: 597 NWMSAVEIL--DDDIY-LGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFR 653
+SA + L +++Y + A+ + NL + + E RL G++H+G +
Sbjct: 1253 LNVSAADFLVQGENLYFVVADTSGNLRLLAYDPENPESHSGERLVTRGDFHIGNVITAMT 1312
Query: 654 HGSLVMRLPDSDVGQIPTVIFGTV----NGVIGVIASLPHEQYLFLEKLQTNLRKVIKGV 709
+ +++ G F V +G + ++ + Y L +Q L + +
Sbjct: 1313 ILPKEKKHQNAEYGYDTGDDFSCVMVNSDGGLQMLVPISDRVYRRLNIIQNYLANRVNTI 1372
Query: 710 GGLNHEQWRSFNNEKK-TVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVE 768
GGLN + +R + T + LDG LI+ F +S E++ V V + +
Sbjct: 1373 GGLNPKSYRLITSPSNLTNPTRRILDGMLIDYFTYMSVAHRHEMAHKCGVPVSTIMNDLV 1432
Query: 769 EL 770
EL
Sbjct: 1433 EL 1434
Score = 59 (25.8 bits), Expect = 7.1e-06, Sum P(3) = 7.1e-06
Identities = 19/78 (24%), Positives = 33/78 (42%)
Query: 25 VEVLERYVNLGPIVDFCV--------VDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINE 76
+E+ + N+GPI DF V + G ++V +GA G L + R I
Sbjct: 490 LEICDVLTNIGPITDFAVGKAGSYSYFPQDNHGPLELVGTAGADGAGGLVVFRRNIFPLI 549
Query: 77 QASVELQGIKGMWSLRSS 94
+ G + +W++ S
Sbjct: 550 AGEFQFDGCEALWTVSIS 567
Score = 44 (20.5 bits), Expect = 7.1e-06, Sum P(3) = 7.1e-06
Identities = 28/126 (22%), Positives = 56/126 (44%)
Query: 79 SVELQG-IKGMWS-LRSSTDDP-FDTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQ 135
+V + G ++ M S +++ +P +T+LV+S E+ I F ++
Sbjct: 563 TVSISGKLRNMKSRIQAQYSNPELETYLVLSKEKESFIFLAG--ETFDEVQHSDFSKDSK 620
Query: 136 TLFCHDAIYN-QLVQVTSGSVRLVSSTSR--ELRNEWKSPPGYSVNVATANASQVLLATG 192
TL + ++VQ+ S+R+ S R +L N K V+ + + +++ G
Sbjct: 621 TLNVGSLLSGMRMVQICPTSLRVYDSNLRLTQLFNFSKKQ--IVVSTSICDPCIIVVFLG 678
Query: 193 GGHLVY 198
GG +Y
Sbjct: 679 GGIALY 684
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 774 764 0.00092 121 3 11 22 0.39 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 74
No. of states in DFA: 622 (66 KB)
Total size of DFA: 384 KB (2189 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 64.30u 0.14s 64.44t Elapsed: 00:00:03
Total cpu time: 64.34u 0.14s 64.48t Elapsed: 00:00:03
Start: Sat May 11 00:51:15 2013 End: Sat May 11 00:51:18 2013