BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004094
(774 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1)
Length = 1140
Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/815 (52%), Positives = 550/815 (67%), Gaps = 56/815 (6%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 332 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 391
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 392 NGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETELMG 450
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P +++VA+ N+SQV++
Sbjct: 451 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVV 510
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 511 AVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 569
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKKV
Sbjct: 570 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 629
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 630 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 689
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK---------- 419
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S +
Sbjct: 690 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGT 749
Query: 420 -----------------------------NQSCAEESEMHFVRLLDDQTFEFISTYPLDT 450
S EE E+H + ++D TFE + +
Sbjct: 750 TALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ 809
Query: 451 FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGA 510
EY S++SC D N Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGA
Sbjct: 810 NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 869
Query: 511 VYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGD 570
VYS+ FNGKLLA+IN ++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGD
Sbjct: 870 VYSMVEFNGKLLASINSTVRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGD 925
Query: 571 LMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGAT 630
LM+S+ LL YK EG EE ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S T
Sbjct: 926 LMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATT 985
Query: 631 DEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPH 689
DEER L+ VG +HLGEFVN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL
Sbjct: 986 DEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSE 1045
Query: 690 EQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRM 749
Y L +Q L KVIK VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M
Sbjct: 1046 SWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKM 1105
Query: 750 DEISKTMN----------VSVEELCKRVEELTRLH 774
E+ + + ++L K VEELTR+H
Sbjct: 1106 QEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb)
Dimerization And Its Roles In Chromatinized Dna Repair
pdb|4E5Z|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb)
Dimerization And Its Roles In Chromatinized Dna Repair
Length = 1150
Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/815 (52%), Positives = 550/815 (67%), Gaps = 56/815 (6%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 342 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 401
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 402 NGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETELMG 460
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P +++VA+ N+SQV++
Sbjct: 461 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVV 520
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 521 AVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 579
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKKV
Sbjct: 580 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 639
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 640 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 699
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK---------- 419
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S +
Sbjct: 700 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGT 759
Query: 420 -----------------------------NQSCAEESEMHFVRLLDDQTFEFISTYPLDT 450
S EE E+H + ++D TFE + +
Sbjct: 760 TALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ 819
Query: 451 FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGA 510
EY S++SC D N Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGA
Sbjct: 820 NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 879
Query: 511 VYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGD 570
VYS+ FNGKLLA+IN ++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGD
Sbjct: 880 VYSMVEFNGKLLASINSTVRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGD 935
Query: 571 LMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGAT 630
LM+S+ LL YK EG EE ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S T
Sbjct: 936 LMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATT 995
Query: 631 DEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPH 689
DEER L+ VG +HLGEFVN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL
Sbjct: 996 DEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSE 1055
Query: 690 EQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRM 749
Y L +Q L KVIK VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M
Sbjct: 1056 SWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKM 1115
Query: 750 DEISKTMN----------VSVEELCKRVEELTRLH 774
E+ + + ++L K VEELTR+H
Sbjct: 1116 QEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1150
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct
Containing Dna-Duplex
pdb|3EI2|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|A Chain A, Structure Of The Hsddb1-Drddb2 Complex
Length = 1158
Score = 837 bits (2162), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/815 (52%), Positives = 550/815 (67%), Gaps = 56/815 (6%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 350 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 409
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 410 NGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETELMG 468
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P +++VA+ N+SQV++
Sbjct: 469 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVV 528
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 529 AVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 587
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKKV
Sbjct: 588 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 647
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 648 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 707
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK---------- 419
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S +
Sbjct: 708 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGT 767
Query: 420 -----------------------------NQSCAEESEMHFVRLLDDQTFEFISTYPLDT 450
S EE E+H + ++D TFE + +
Sbjct: 768 TALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ 827
Query: 451 FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGA 510
EY S++SC D N Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGA
Sbjct: 828 NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887
Query: 511 VYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGD 570
VYS+ FNGKLLA+IN ++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGD
Sbjct: 888 VYSMVEFNGKLLASINSTVRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGD 943
Query: 571 LMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGAT 630
LM+S+ LL YK EG EE ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S T
Sbjct: 944 LMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATT 1003
Query: 631 DEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPH 689
DEER L+ VG +HLGEFVN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL
Sbjct: 1004 DEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSE 1063
Query: 690 EQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRM 749
Y L +Q L KVIK VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M
Sbjct: 1064 SWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKM 1123
Query: 750 DEISKTMN----------VSVEELCKRVEELTRLH 774
E+ + + ++L K VEELTR+H
Sbjct: 1124 QEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1158
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|C Chain C, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1144
Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/815 (52%), Positives = 550/815 (67%), Gaps = 56/815 (6%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 336 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 395
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 396 NGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETELMG 454
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P +++VA+ N+SQV++
Sbjct: 455 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVV 514
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 515 AVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 573
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKKV
Sbjct: 574 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 633
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 634 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 693
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK---------- 419
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S +
Sbjct: 694 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGT 753
Query: 420 -----------------------------NQSCAEESEMHFVRLLDDQTFEFISTYPLDT 450
S EE E+H + ++D TFE + +
Sbjct: 754 TALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ 813
Query: 451 FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGA 510
EY S++SC D N Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGA
Sbjct: 814 NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 873
Query: 511 VYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGD 570
VYS+ FNGKLLA+IN ++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGD
Sbjct: 874 VYSMVEFNGKLLASINSTVRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGD 929
Query: 571 LMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGAT 630
LM+S+ LL YK EG EE ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S T
Sbjct: 930 LMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATT 989
Query: 631 DEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPH 689
DEER L+ VG +HLGEFVN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL
Sbjct: 990 DEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSE 1049
Query: 690 EQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRM 749
Y L +Q L KVIK VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M
Sbjct: 1050 SWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKM 1109
Query: 750 DEISKTMN----------VSVEELCKRVEELTRLH 774
E+ + + ++L K VEELTR+H
Sbjct: 1110 QEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1144
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|C Chain C, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
Length = 1159
Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/815 (52%), Positives = 550/815 (67%), Gaps = 56/815 (6%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 351 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 410
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 411 NGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETELMG 469
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P +++VA+ N+SQV++
Sbjct: 470 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVV 529
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 530 AVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 588
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKKV
Sbjct: 589 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 648
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 649 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 708
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK---------- 419
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S +
Sbjct: 709 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGT 768
Query: 420 -----------------------------NQSCAEESEMHFVRLLDDQTFEFISTYPLDT 450
S EE E+H + ++D TFE + +
Sbjct: 769 TALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ 828
Query: 451 FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGA 510
EY S++SC D N Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGA
Sbjct: 829 NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 888
Query: 511 VYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGD 570
VYS+ FNGKLLA+IN ++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGD
Sbjct: 889 VYSMVEFNGKLLASINSTVRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGD 944
Query: 571 LMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGAT 630
LM+S+ LL YK EG EE ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S T
Sbjct: 945 LMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATT 1004
Query: 631 DEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPH 689
DEER L+ VG +HLGEFVN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL
Sbjct: 1005 DEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSE 1064
Query: 690 EQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRM 749
Y L +Q L KVIK VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M
Sbjct: 1065 SWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKM 1124
Query: 750 DEISKTMN----------VSVEELCKRVEELTRLH 774
E+ + + ++L K VEELTR+H
Sbjct: 1125 QEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1159
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
Length = 1159
Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/815 (52%), Positives = 550/815 (67%), Gaps = 56/815 (6%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 351 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 410
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 411 NGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETELMG 469
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P +++VA+ N+SQV++
Sbjct: 470 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVV 529
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 530 AVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 588
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKKV
Sbjct: 589 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 648
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 649 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 708
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK---------- 419
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S +
Sbjct: 709 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGT 768
Query: 420 -----------------------------NQSCAEESEMHFVRLLDDQTFEFISTYPLDT 450
S EE E+H + ++D TFE + +
Sbjct: 769 TALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ 828
Query: 451 FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGA 510
EY S++SC D N Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGA
Sbjct: 829 NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 888
Query: 511 VYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGD 570
VYS+ FNGKLLA+IN ++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGD
Sbjct: 889 VYSMVEFNGKLLASINSTVRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGD 944
Query: 571 LMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGAT 630
LM+S+ LL YK EG EE ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S T
Sbjct: 945 LMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATT 1004
Query: 631 DEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPH 689
DEER L+ VG +HLGEFVN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL
Sbjct: 1005 DEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSE 1064
Query: 690 EQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRM 749
Y L +Q L KVIK VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M
Sbjct: 1065 SWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKM 1124
Query: 750 DEISKTMN----------VSVEELCKRVEELTRLH 774
E+ + + ++L K VEELTR+H
Sbjct: 1125 QEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1159
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
Length = 1159
Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/815 (52%), Positives = 550/815 (67%), Gaps = 56/815 (6%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 351 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 410
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 411 NGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETELMG 469
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P +++VA+ N+SQV++
Sbjct: 470 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVV 529
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 530 AVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 588
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKKV
Sbjct: 589 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 648
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 649 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 708
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK---------- 419
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S +
Sbjct: 709 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGT 768
Query: 420 -----------------------------NQSCAEESEMHFVRLLDDQTFEFISTYPLDT 450
S EE E+H + ++D TFE + +
Sbjct: 769 TALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ 828
Query: 451 FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGA 510
EY S++SC D N Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGA
Sbjct: 829 NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 888
Query: 511 VYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGD 570
VYS+ FNGKLLA+IN ++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGD
Sbjct: 889 VYSMVEFNGKLLASINSTVRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGD 944
Query: 571 LMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGAT 630
LM+S+ LL YK EG EE ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S T
Sbjct: 945 LMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATT 1004
Query: 631 DEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPH 689
DEER L+ VG +HLGEFVN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL
Sbjct: 1005 DEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSE 1064
Query: 690 EQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRM 749
Y L +Q L KVIK VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M
Sbjct: 1065 SWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKM 1124
Query: 750 DEISKTMN----------VSVEELCKRVEELTRLH 774
E+ + + ++L K VEELTR+H
Sbjct: 1125 QEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1159
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex
pdb|4A0K|C Chain C, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1159
Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/815 (52%), Positives = 550/815 (67%), Gaps = 56/815 (6%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 351 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 410
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
NGIGI+E AS++L GIKG+W LRS + D LV+SF+ +TR+L +N G
Sbjct: 411 NGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETELMG 469
Query: 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
F QT FC + + QL+Q+TS SVRLVS + L +EWK P +++VA+ N+SQV++
Sbjct: 470 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVV 529
Query: 190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 530 AVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 588
Query: 250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKKV
Sbjct: 589 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 648
Query: 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +PD
Sbjct: 649 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 708
Query: 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK---------- 419
SLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S +
Sbjct: 709 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGT 768
Query: 420 -----------------------------NQSCAEESEMHFVRLLDDQTFEFISTYPLDT 450
S EE E+H + ++D TFE + +
Sbjct: 769 TALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ 828
Query: 451 FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGA 510
EY S++SC D N Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KGA
Sbjct: 829 NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 888
Query: 511 VYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGD 570
VYS+ FNGKLLA+IN ++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGD
Sbjct: 889 VYSMVEFNGKLLASINSTVRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGD 944
Query: 571 LMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGAT 630
LM+S+ LL YK EG EE ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S T
Sbjct: 945 LMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATT 1004
Query: 631 DEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPH 689
DEER L+ VG +HLGEFVN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL
Sbjct: 1005 DEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSE 1064
Query: 690 EQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRM 749
Y L +Q L KVIK VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M
Sbjct: 1065 SWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKM 1124
Query: 750 DEISKTMN----------VSVEELCKRVEELTRLH 774
E+ + + ++L K VEELTR+H
Sbjct: 1125 QEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1159
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|C Chain C, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|E Chain E, Structure Of The Hsddb1-Hsddb2 Complex
Length = 1158
Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/816 (51%), Positives = 552/816 (67%), Gaps = 58/816 (7%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 350 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 409
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTD-DPFDTFLVVSFISETRILAMNLXXXXXXXXXX 128
NGIGI+E AS++L GIKG+W LRS + + +DT LV+SF+ +TR+L +N
Sbjct: 410 NGIGIHEHASIDLPGIKGLWPLRSDPNRETYDT-LVLSFVGQTRVLMLN-GEEVEETELM 467
Query: 129 GFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVL 188
GF QT FC + + QL+Q+TS SVRLVS + L +EWK P +++VA+ N+SQV+
Sbjct: 468 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 527
Query: 189 LATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRI 248
+A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 528 VAVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARI 586
Query: 249 FSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKK 308
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKK
Sbjct: 587 LKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKK 646
Query: 309 VSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFP 368
V+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +P
Sbjct: 647 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYP 706
Query: 369 DSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK--------- 419
DSLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S +
Sbjct: 707 DSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 766
Query: 420 ------------------------------NQSCAEESEMHFVRLLDDQTFEFISTYPLD 449
S EE E+H + ++D TFE + +
Sbjct: 767 TTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFL 826
Query: 450 TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKG 509
EY S++SC D N Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KG
Sbjct: 827 QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG 886
Query: 510 AVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVG 569
AVYS+ FNGKLLA+IN ++LY+W D +++EC H+ +I+ALY++T+GDFI+VG
Sbjct: 887 AVYSMVEFNGKLLASINSTVRLYEWTTEKD----VRTECNHYNNIMALYLKTKGDFILVG 942
Query: 570 DLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGA 629
DLM+S+ LL YK EG EE ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S
Sbjct: 943 DLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAAT 1002
Query: 630 TDEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLP 688
TDEER L+ VG +HLGEFVN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL
Sbjct: 1003 TDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLS 1062
Query: 689 HEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTR 748
Y L +Q L KVIK VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +
Sbjct: 1063 ESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPK 1122
Query: 749 MDEISKTMN----------VSVEELCKRVEELTRLH 774
M E+ + + ++L K VEELTR+H
Sbjct: 1123 MQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1158
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5L|B Chain B, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5M|A Chain A, Crystal Structure Of Ddb1
pdb|2HYE|A Chain A, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 1140
Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/816 (51%), Positives = 552/816 (67%), Gaps = 58/816 (7%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 332 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 391
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTD-DPFDTFLVVSFISETRILAMNLXXXXXXXXXX 128
NGIGI+E AS++L GIKG+W LRS + + +DT LV+SF+ +TR+L +N
Sbjct: 392 NGIGIHEHASIDLPGIKGLWPLRSDPNRETYDT-LVLSFVGQTRVLMLN-GEEVEETELM 449
Query: 129 GFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVL 188
GF QT FC + + QL+Q+TS SVRLVS + L +EWK P +++VA+ N+SQV+
Sbjct: 450 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 509
Query: 189 LATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRI 248
+A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 510 VAVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARI 568
Query: 249 FSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKK 308
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKK
Sbjct: 569 LKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKK 628
Query: 309 VSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFP 368
V+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +P
Sbjct: 629 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYP 688
Query: 369 DSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK--------- 419
DSLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S +
Sbjct: 689 DSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
Query: 420 ------------------------------NQSCAEESEMHFVRLLDDQTFEFISTYPLD 449
S EE E+H + ++D TFE + +
Sbjct: 749 TTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFL 808
Query: 450 TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKG 509
EY S++SC D N Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KG
Sbjct: 809 QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG 868
Query: 510 AVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVG 569
AVYS+ FNGKLLA+IN ++LY+W D +++EC H+ +I+ALY++T+GDFI+VG
Sbjct: 869 AVYSMVEFNGKLLASINSTVRLYEWTTEKD----VRTECNHYNNIMALYLKTKGDFILVG 924
Query: 570 DLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGA 629
DLM+S+ LL YK EG EE ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S
Sbjct: 925 DLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAAT 984
Query: 630 TDEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLP 688
TDEER L+ VG +HLGEFVN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL
Sbjct: 985 TDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLS 1044
Query: 689 HEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTR 748
Y L +Q L KVIK VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +
Sbjct: 1045 ESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPK 1104
Query: 749 MDEISKTMN----------VSVEELCKRVEELTRLH 774
M E+ + + ++L K VEELTR+H
Sbjct: 1105 MQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Hbx
pdb|3I7K|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Whx
pdb|3I7L|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Ddb2
pdb|3I7N|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdtc1
pdb|3I7O|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Iqwd1
pdb|3I7P|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr40a
pdb|3I89|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr22
pdb|3I8C|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr21a
pdb|3I8E|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr42a
pdb|3I8E|B Chain B, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr42a
Length = 1143
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/816 (51%), Positives = 552/816 (67%), Gaps = 58/816 (7%)
Query: 10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
QL+KLN+ + +GSYV +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 335 QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 394
Query: 70 NGIGINEQASVELQGIKGMWSLRSSTD-DPFDTFLVVSFISETRILAMNLXXXXXXXXXX 128
NGIGI+E AS++L GIKG+W LRS + + +DT LV+SF+ +TR+L +N
Sbjct: 395 NGIGIHEHASIDLPGIKGLWPLRSDPNRETYDT-LVLSFVGQTRVLMLN-GEEVEETELM 452
Query: 129 GFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVL 188
GF QT FC + + QL+Q+TS SVRLVS + L +EWK P +++VA+ N+SQV+
Sbjct: 453 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 512
Query: 189 LATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRI 248
+A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS RI
Sbjct: 513 VAVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARI 571
Query: 249 FSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKK 308
LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DRKK
Sbjct: 572 LKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKK 631
Query: 309 VSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFP 368
V+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS +P
Sbjct: 632 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYP 691
Query: 369 DSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK--------- 419
DSLA+A LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S +
Sbjct: 692 DSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 751
Query: 420 ------------------------------NQSCAEESEMHFVRLLDDQTFEFISTYPLD 449
S EE E+H + ++D TFE + +
Sbjct: 752 TTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFL 811
Query: 450 TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKG 509
EY S++SC D N Y+ VGTA V PEE EP +GRI+VF DGKLQ +AEKE KG
Sbjct: 812 QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG 871
Query: 510 AVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVG 569
AVYS+ FNGKLLA+IN ++LY+W D +++EC H+ +I+ALY++T+GDFI+VG
Sbjct: 872 AVYSMVEFNGKLLASINSTVRLYEWTTEKD----VRTECNHYNNIMALYLKTKGDFILVG 927
Query: 570 DLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGA 629
DLM+S+ LL YK EG EE ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S
Sbjct: 928 DLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAAT 987
Query: 630 TDEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLP 688
TDEER L+ VG +HLGEFVN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL
Sbjct: 988 TDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLS 1047
Query: 689 HEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTR 748
Y L +Q L KVIK VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +
Sbjct: 1048 ESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPK 1107
Query: 749 MDEISKTMN----------VSVEELCKRVEELTRLH 774
M E+ + + ++L K VEELTR+H
Sbjct: 1108 MQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1143
>pdb|2B5N|A Chain A, Crystal Structure Of The Ddb1 Bpb Domain
pdb|2B5N|B Chain B, Crystal Structure Of The Ddb1 Bpb Domain
pdb|2B5N|C Chain C, Crystal Structure Of The Ddb1 Bpb Domain
pdb|2B5N|D Chain D, Crystal Structure Of The Ddb1 Bpb Domain
Length = 323
Score = 355 bits (912), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 177/323 (54%), Positives = 233/323 (72%), Gaps = 4/323 (1%)
Query: 68 VRNGIGINEQASVELQGIKGMWSLRSSTD-DPFDTFLVVSFISETRILAMNLXXXXXXXX 126
+RNGIGI+E AS++L GIKG+W LRS + + +DT LV+SF+ +TR+L +N
Sbjct: 4 MRNGIGIHEHASIDLPGIKGLWPLRSDPNRETYDT-LVLSFVGQTRVLMLN-GEEVEETE 61
Query: 127 XXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQ 186
GF QT FC + + QL+Q+TS SVRLVS + L +EWK P +++VA+ N+SQ
Sbjct: 62 LMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQ 121
Query: 187 VLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISV 246
V++A G L YL+I L ++ H ++E+E++CLDI P+G++ S + A+G+WTDIS
Sbjct: 122 VVVAVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISA 180
Query: 247 RIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDR 306
RI LP L+ KE LGGEIIPRS+L+ FE YLLCALGDG L F LN++TG L+DR
Sbjct: 181 RILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDR 240
Query: 307 KKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAA 366
KKV+LGTQP LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS
Sbjct: 241 KKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDG 300
Query: 367 FPDSLAIAKEGELTIGTIDDIQK 389
+PDSLA+A LTIGTID+IQK
Sbjct: 301 YPDSLALANNSTLTIGTIDEIQK 323
>pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp And Moa Bound
pdb|1MEI|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Mycophenolic Acid
Bound
pdb|1MEW|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Nad Bound
pdb|1AK5|A Chain A, Inosine Monophosphate Dehydrogenase (impdh) From
Tritrichomonas Foetus
Length = 503
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 524 AINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIV--------VGDLMKSI 575
AI+Q+ + DDGT HG +L L Q D+ + V D+M
Sbjct: 121 AISQRTTHNTVAVTDDGT--------PHGVLLGLVTQR--DYPIDLTQTETKVSDMMTPF 170
Query: 576 SLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYL 611
S L+ H++ + E + ++A+ I+DDD +L
Sbjct: 171 SKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHL 206
>pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp Bound
pdb|1ME9|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp Bound
pdb|1MEH|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp And Moa Bound
Length = 503
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 524 AINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIV--------VGDLMKSI 575
AI+Q+ + DDGT HG +L L Q D+ + V D+M
Sbjct: 121 AISQRTTHNTVAVTDDGT--------PHGVLLGLVTQR--DYPIDLTQTETKVSDMMTPF 170
Query: 576 SLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYL 611
S L+ H++ + E + ++A+ I+DDD +L
Sbjct: 171 SKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHL 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,537,996
Number of Sequences: 62578
Number of extensions: 959171
Number of successful extensions: 2672
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2592
Number of HSP's gapped (non-prelim): 25
length of query: 774
length of database: 14,973,337
effective HSP length: 106
effective length of query: 668
effective length of database: 8,340,069
effective search space: 5571166092
effective search space used: 5571166092
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)