Query 004094
Match_columns 774
No_of_seqs 167 out of 719
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 17:26:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1897 Damage-specific DNA bi 100.0 4E-134 9E-139 1092.1 81.2 765 1-774 321-1096(1096)
2 KOG1898 Splicing factor 3b, su 100.0 9E-100 2E-104 827.4 56.2 747 1-771 348-1201(1205)
3 KOG1896 mRNA cleavage and poly 100.0 3.4E-97 7E-102 816.9 69.1 739 25-773 463-1362(1366)
4 COG5161 SFT1 Pre-mRNA cleavage 100.0 8.1E-68 1.8E-72 563.0 48.6 729 23-768 469-1311(1319)
5 PF03178 CPSF_A: CPSF A subuni 100.0 1.4E-52 3E-57 446.4 36.9 310 429-743 1-321 (321)
6 PF10433 MMS1_N: Mono-function 100.0 9.2E-33 2E-37 311.8 25.7 217 1-225 272-503 (504)
7 KOG2048 WD40 repeat protein [G 99.1 2E-06 4.4E-11 93.1 41.0 408 173-625 109-548 (691)
8 KOG0318 WD40 repeat stress pro 99.1 2.7E-06 6E-11 89.4 39.3 379 192-624 210-601 (603)
9 KOG0319 WD40-repeat-containing 99.0 1.3E-06 2.8E-11 95.4 33.1 392 147-581 34-442 (775)
10 KOG0306 WD40-repeat-containing 98.3 0.011 2.5E-07 65.6 42.3 351 234-624 161-579 (888)
11 KOG1036 Mitotic spindle checkp 98.3 0.00012 2.7E-09 72.5 20.8 263 216-525 14-293 (323)
12 KOG2106 Uncharacterized conser 98.3 0.0088 1.9E-07 63.4 42.3 380 177-623 203-624 (626)
13 KOG1446 Histone H3 (Lys4) meth 98.2 0.0077 1.7E-07 60.4 31.4 144 368-534 150-302 (311)
14 cd00200 WD40 WD40 domain, foun 98.2 0.0053 1.1E-07 62.9 32.8 272 214-532 8-288 (289)
15 KOG1539 WD repeat protein [Gen 98.2 0.019 4.2E-07 64.6 37.2 389 144-577 173-602 (910)
16 KOG0291 WD40-repeat-containing 98.2 0.021 4.6E-07 63.6 49.8 407 172-626 53-551 (893)
17 PRK11028 6-phosphogluconolacto 98.2 0.0095 2.1E-07 63.8 34.4 184 398-604 125-327 (330)
18 KOG0647 mRNA export protein (c 98.0 0.0019 4.1E-08 64.1 22.7 271 215-526 27-313 (347)
19 KOG0291 WD40-repeat-containing 98.0 0.044 9.6E-07 61.2 51.2 433 100-580 108-611 (893)
20 KOG0318 WD40 repeat stress pro 98.0 0.035 7.5E-07 59.4 43.0 348 136-534 237-599 (603)
21 PF03178 CPSF_A: CPSF A subuni 98.0 0.0059 1.3E-07 65.1 28.1 193 410-624 42-264 (321)
22 cd00200 WD40 WD40 domain, foun 97.9 0.016 3.4E-07 59.3 29.8 218 371-626 24-250 (289)
23 KOG1539 WD repeat protein [Gen 97.9 0.07 1.5E-06 60.3 39.6 223 233-498 46-278 (910)
24 PF10282 Lactonase: Lactonase, 97.8 0.092 2E-06 56.5 35.0 241 183-443 47-329 (345)
25 PF10282 Lactonase: Lactonase, 97.7 0.11 2.3E-06 56.1 37.9 284 281-593 1-334 (345)
26 KOG2055 WD40 repeat protein [G 97.6 0.038 8.2E-07 58.3 24.3 199 268-495 216-417 (514)
27 PRK11028 6-phosphogluconolacto 97.6 0.17 3.6E-06 54.1 34.3 269 193-535 11-304 (330)
28 KOG0310 Conserved WD40 repeat- 97.6 0.052 1.1E-06 57.7 25.2 272 215-533 26-306 (487)
29 KOG0285 Pleiotropic regulator 97.5 0.044 9.5E-07 55.9 22.5 269 215-533 151-437 (460)
30 KOG1274 WD40 repeat protein [G 97.4 0.05 1.1E-06 62.1 25.1 233 184-495 25-262 (933)
31 KOG1273 WD40 repeat protein [G 97.4 0.025 5.5E-07 56.7 20.1 206 391-625 99-322 (405)
32 KOG0296 Angio-associated migra 97.4 0.2 4.4E-06 51.4 27.8 312 176-533 66-396 (399)
33 KOG0283 WD40 repeat-containing 97.4 0.02 4.3E-07 64.6 21.0 183 370-582 381-577 (712)
34 KOG2106 Uncharacterized conser 97.4 0.29 6.4E-06 52.4 39.0 337 236-626 215-582 (626)
35 KOG0319 WD40-repeat-containing 97.4 0.4 8.7E-06 53.8 40.9 424 153-626 84-536 (775)
36 PF02239 Cytochrom_D1: Cytochr 97.3 0.34 7.3E-06 52.5 32.8 317 152-506 15-356 (369)
37 PLN00181 protein SPA1-RELATED; 97.2 0.36 7.8E-06 58.4 31.8 222 376-624 554-792 (793)
38 KOG0282 mRNA splicing factor [ 97.2 0.0095 2.1E-07 62.9 14.8 257 376-683 236-501 (503)
39 KOG1408 WD40 repeat protein [F 97.2 0.62 1.4E-05 52.1 29.3 72 219-299 264-356 (1080)
40 COG2706 3-carboxymuconate cycl 97.1 0.48 1E-05 48.9 30.2 278 234-536 3-322 (346)
41 KOG2055 WD40 repeat protein [G 97.1 0.064 1.4E-06 56.6 19.3 122 165-298 249-375 (514)
42 KOG1036 Mitotic spindle checkp 97.0 0.3 6.4E-06 49.2 22.7 245 152-420 34-296 (323)
43 KOG0315 G-protein beta subunit 97.0 0.18 3.9E-06 49.2 19.8 225 371-624 55-287 (311)
44 KOG2048 WD40 repeat protein [G 96.9 0.96 2.1E-05 50.4 42.5 116 172-298 67-185 (691)
45 KOG1273 WD40 repeat protein [G 96.9 0.16 3.5E-06 51.1 19.6 186 218-420 26-218 (405)
46 KOG2111 Uncharacterized conser 96.9 0.6 1.3E-05 47.3 24.9 256 401-689 8-324 (346)
47 TIGR03866 PQQ_ABC_repeats PQQ- 96.9 0.72 1.6E-05 47.9 32.4 261 237-535 4-279 (300)
48 KOG0276 Vesicle coat complex C 96.7 1.4 3.1E-05 48.7 37.9 176 104-298 39-216 (794)
49 KOG2110 Uncharacterized conser 96.5 0.29 6.3E-06 50.5 18.7 154 135-299 88-250 (391)
50 KOG2110 Uncharacterized conser 96.5 1.3 2.7E-05 46.0 23.2 272 375-686 24-329 (391)
51 KOG0306 WD40-repeat-containing 96.5 2.2 4.7E-05 48.3 31.2 309 186-579 336-662 (888)
52 PF08596 Lgl_C: Lethal giant l 96.5 0.3 6.4E-06 53.2 20.1 76 216-299 87-175 (395)
53 KOG0647 mRNA export protein (c 96.4 0.64 1.4E-05 46.8 19.8 199 399-630 28-233 (347)
54 KOG0646 WD40 repeat protein [G 96.4 0.59 1.3E-05 49.7 20.5 104 181-297 47-153 (476)
55 TIGR03866 PQQ_ABC_repeats PQQ- 96.3 1.8 3.9E-05 44.9 32.1 266 154-449 12-290 (300)
56 KOG0282 mRNA splicing factor [ 96.1 0.13 2.9E-06 54.6 14.4 221 368-622 270-502 (503)
57 KOG0283 WD40 repeat-containing 96.1 0.17 3.7E-06 57.4 16.1 111 176-298 371-482 (712)
58 KOG0310 Conserved WD40 repeat- 96.1 1.5 3.2E-05 47.1 21.9 190 401-624 113-308 (487)
59 KOG0289 mRNA splicing factor [ 96.1 2.3 4.9E-05 45.1 22.9 211 376-623 282-504 (506)
60 KOG0263 Transcription initiati 95.9 0.49 1.1E-05 53.4 18.3 141 368-534 503-648 (707)
61 KOG0316 Conserved WD40 repeat- 95.8 2 4.3E-05 41.9 21.5 257 233-532 29-296 (307)
62 KOG0271 Notchless-like WD40 re 95.8 3 6.6E-05 43.5 28.2 309 173-527 114-471 (480)
63 KOG0279 G protein beta subunit 95.7 2.6 5.6E-05 42.2 23.4 139 152-299 84-224 (315)
64 KOG2321 WD40 repeat protein [G 95.7 0.45 9.7E-06 51.9 16.2 139 186-337 148-295 (703)
65 KOG0278 Serine/threonine kinas 95.7 0.38 8.2E-06 47.0 14.2 130 375-534 163-296 (334)
66 TIGR02658 TTQ_MADH_Hv methylam 95.6 3.8 8.3E-05 43.7 31.7 262 153-446 27-338 (352)
67 PF00780 CNH: CNH domain; Int 95.6 3.1 6.7E-05 43.0 22.5 221 278-535 6-255 (275)
68 KOG0289 mRNA splicing factor [ 95.6 4 8.6E-05 43.3 24.1 142 368-535 315-460 (506)
69 KOG0294 WD40 repeat-containing 95.5 3.4 7.3E-05 42.1 27.4 195 430-654 107-305 (362)
70 COG2706 3-carboxymuconate cycl 95.4 4 8.7E-05 42.4 31.5 231 193-442 63-327 (346)
71 PLN00181 protein SPA1-RELATED; 95.4 9.2 0.0002 46.3 34.6 219 376-626 504-739 (793)
72 KOG0316 Conserved WD40 repeat- 95.3 3.1 6.7E-05 40.6 21.4 243 152-420 38-292 (307)
73 KOG0315 G-protein beta subunit 95.3 3.3 7.1E-05 40.8 24.8 134 153-299 20-156 (311)
74 KOG2321 WD40 repeat protein [G 95.3 0.98 2.1E-05 49.4 17.0 206 279-517 63-280 (703)
75 KOG4378 Nuclear protein COP1 [ 95.3 0.99 2.1E-05 48.4 16.7 184 370-581 91-280 (673)
76 KOG0272 U4/U6 small nuclear ri 95.2 3.2 6.9E-05 43.9 20.0 204 233-458 187-437 (459)
77 KOG0266 WD40 repeat-containing 95.2 6.8 0.00015 43.9 26.6 241 215-496 159-410 (456)
78 KOG0313 Microtubule binding pr 95.2 4.8 0.0001 42.0 21.8 279 214-533 104-416 (423)
79 KOG0772 Uncharacterized conser 95.2 2.2 4.7E-05 46.2 19.0 241 401-689 217-489 (641)
80 KOG0650 WD40 repeat nucleolar 95.2 0.83 1.8E-05 50.1 16.2 259 217-532 402-677 (733)
81 PF00780 CNH: CNH domain; Int 95.2 4.6 9.9E-05 41.7 27.3 240 179-449 2-266 (275)
82 PTZ00420 coronin; Provisional 95.1 8.2 0.00018 44.2 26.6 197 399-626 75-294 (568)
83 KOG0279 G protein beta subunit 95.1 4.2 9.2E-05 40.7 23.2 135 152-297 171-313 (315)
84 PTZ00421 coronin; Provisional 95.0 8 0.00017 43.7 30.5 78 214-298 74-157 (493)
85 KOG0299 U3 snoRNP-associated p 94.9 3.3 7.3E-05 44.2 19.4 133 375-534 306-453 (479)
86 KOG0649 WD40 repeat protein [G 94.7 0.88 1.9E-05 44.4 13.4 145 466-625 21-186 (325)
87 KOG0284 Polyadenylation factor 94.7 0.67 1.4E-05 48.5 13.3 251 278-577 107-376 (464)
88 KOG1645 RING-finger-containing 94.6 2.7 5.8E-05 44.2 17.5 223 235-476 208-453 (463)
89 KOG0276 Vesicle coat complex C 94.6 9.3 0.0002 42.6 34.9 203 215-445 13-222 (794)
90 TIGR03300 assembly_YfgL outer 94.5 8.7 0.00019 41.8 31.4 101 181-297 62-163 (377)
91 TIGR02658 TTQ_MADH_Hv methylam 94.4 8.4 0.00018 41.1 31.9 80 404-497 253-332 (352)
92 KOG2445 Nuclear pore complex c 94.4 5.1 0.00011 40.7 18.2 101 430-535 136-256 (361)
93 KOG1587 Cytoplasmic dynein int 94.3 3.9 8.4E-05 46.4 19.7 80 213-298 240-324 (555)
94 KOG1446 Histone H3 (Lys4) meth 94.3 7.2 0.00016 39.8 27.2 243 152-417 35-294 (311)
95 KOG1407 WD40 repeat protein [F 94.0 7.3 0.00016 38.8 25.3 221 152-436 86-309 (313)
96 KOG3881 Uncharacterized conser 93.8 4.5 9.7E-05 42.4 17.1 91 429-534 225-319 (412)
97 KOG0278 Serine/threonine kinas 93.8 2.9 6.3E-05 41.1 14.9 142 144-299 155-299 (334)
98 PF14727 PHTB1_N: PTHB1 N-term 93.7 13 0.00028 40.8 31.1 140 376-533 154-316 (418)
99 KOG0640 mRNA cleavage stimulat 93.7 3.3 7.1E-05 42.0 15.4 230 177-419 175-417 (430)
100 KOG0646 WD40 repeat protein [G 93.6 4.2 9.2E-05 43.5 16.9 203 467-696 93-316 (476)
101 KOG2111 Uncharacterized conser 93.6 9.9 0.00021 38.9 25.6 227 50-300 57-325 (346)
102 PF02239 Cytochrom_D1: Cytochr 93.5 13 0.00028 40.3 22.9 198 233-448 5-212 (369)
103 KOG0650 WD40 repeat nucleolar 93.5 2.1 4.6E-05 47.1 14.9 183 375-580 420-636 (733)
104 KOG0294 WD40 repeat-containing 93.4 10 0.00022 38.7 25.4 250 214-515 42-304 (362)
105 KOG0273 Beta-transducin family 93.4 13 0.00029 40.0 27.0 245 214-515 234-500 (524)
106 KOG0645 WD40 repeat protein [G 93.3 9.7 0.00021 38.1 26.5 257 376-684 36-308 (312)
107 PRK11138 outer membrane biogen 93.1 16 0.00035 40.0 29.8 113 181-303 66-182 (394)
108 KOG0772 Uncharacterized conser 93.1 15 0.00032 40.1 20.0 292 167-492 159-484 (641)
109 KOG1517 Guanine nucleotide bin 93.1 18 0.00039 43.2 22.0 224 400-654 1066-1312(1387)
110 PF11768 DUF3312: Protein of u 93.1 18 0.00038 40.4 27.0 102 388-516 249-352 (545)
111 KOG1274 WD40 repeat protein [G 92.9 16 0.00036 42.6 21.3 219 52-298 26-263 (933)
112 KOG0299 U3 snoRNP-associated p 92.8 16 0.00035 39.3 20.6 59 233-298 298-357 (479)
113 KOG0305 Anaphase promoting com 92.4 21 0.00045 39.6 26.0 253 184-475 188-451 (484)
114 KOG0266 WD40 repeat-containing 92.4 22 0.00048 39.8 27.4 244 176-449 161-420 (456)
115 PTZ00420 coronin; Provisional 92.3 25 0.00055 40.3 29.7 113 175-297 75-197 (568)
116 KOG0275 Conserved WD40 repeat- 92.1 1.6 3.5E-05 44.1 10.9 273 392-720 205-493 (508)
117 KOG0288 WD40 repeat protein Ti 92.1 1.5 3.2E-05 46.1 11.0 117 376-515 321-438 (459)
118 KOG1897 Damage-specific DNA bi 92.0 32 0.0007 40.8 51.4 165 496-686 757-941 (1096)
119 TIGR03300 assembly_YfgL outer 91.6 23 0.0005 38.4 29.4 132 154-303 76-212 (377)
120 KOG1408 WD40 repeat protein [F 91.6 5.6 0.00012 44.9 15.2 98 373-495 614-713 (1080)
121 PF04053 Coatomer_WDAD: Coatom 91.6 13 0.00029 41.1 18.7 171 314-530 34-218 (443)
122 PTZ00421 coronin; Provisional 91.0 32 0.00069 38.9 31.6 115 175-298 76-199 (493)
123 PF14761 HPS3_N: Hermansky-Pud 90.9 15 0.00031 36.0 15.7 145 375-534 36-213 (215)
124 KOG0272 U4/U6 small nuclear ri 90.6 22 0.00047 37.9 17.5 134 370-535 233-375 (459)
125 KOG1188 WD40 repeat protein [G 90.3 14 0.00029 38.3 15.4 175 148-334 45-232 (376)
126 KOG4328 WD40 protein [Function 89.9 31 0.00068 37.1 20.6 278 175-494 187-494 (498)
127 PF14783 BBS2_Mid: Ciliary BBS 89.6 6.7 0.00015 33.9 11.0 66 454-533 2-69 (111)
128 KOG0273 Beta-transducin family 89.3 36 0.00078 36.9 27.0 275 214-533 177-480 (524)
129 KOG4378 Nuclear protein COP1 [ 89.1 8.9 0.00019 41.5 13.6 146 134-298 133-281 (673)
130 KOG2394 WD40 protein DMR-N9 [G 89.0 22 0.00047 39.1 16.6 89 508-605 290-383 (636)
131 KOG0277 Peroxisomal targeting 88.4 28 0.00062 34.6 17.7 66 467-535 21-91 (311)
132 KOG1517 Guanine nucleotide bin 88.4 65 0.0014 38.8 22.9 241 233-535 1076-1333(1387)
133 KOG0293 WD40 repeat-containing 87.4 44 0.00095 35.6 21.9 279 85-387 224-515 (519)
134 KOG4649 PQQ (pyrrolo-quinoline 87.3 34 0.00073 34.3 17.1 195 397-623 11-205 (354)
135 PF12894 Apc4_WD40: Anaphase-p 87.3 1.8 3.9E-05 31.1 5.1 39 207-252 3-41 (47)
136 KOG0296 Angio-associated migra 87.0 43 0.00093 35.1 26.6 274 214-533 63-354 (399)
137 KOG2114 Vacuolar assembly/sort 86.7 73 0.0016 37.4 23.1 200 176-387 27-245 (933)
138 KOG0643 Translation initiation 86.6 38 0.00081 34.1 25.9 267 401-719 13-297 (327)
139 KOG0263 Transcription initiati 86.5 18 0.00039 41.5 14.8 109 137-253 530-650 (707)
140 KOG1896 mRNA cleavage and poly 85.9 95 0.0021 38.0 22.1 94 488-584 1117-1216(1366)
141 PF14779 BBS1: Ciliary BBSome 85.9 6.5 0.00014 39.6 10.1 77 215-294 176-255 (257)
142 KOG3881 Uncharacterized conser 85.8 11 0.00024 39.6 11.8 131 508-650 105-250 (412)
143 KOG1538 Uncharacterized conser 85.7 70 0.0015 36.3 19.3 40 370-419 245-284 (1081)
144 KOG0305 Anaphase promoting com 85.7 65 0.0014 35.9 22.4 206 398-626 217-462 (484)
145 KOG2096 WD40 repeat protein [G 85.7 47 0.001 34.2 21.5 255 174-457 86-379 (420)
146 KOG0302 Ribosome Assembly prot 85.6 28 0.00062 36.6 14.5 136 377-535 234-378 (440)
147 KOG0290 Conserved WD40 repeat- 85.6 20 0.00044 36.3 13.0 159 454-625 47-227 (364)
148 KOG1587 Cytoplasmic dynein int 85.4 74 0.0016 36.3 20.3 156 453-626 346-517 (555)
149 KOG2919 Guanine nucleotide-bin 85.4 47 0.001 34.3 15.6 222 374-626 68-328 (406)
150 PF13360 PQQ_2: PQQ-like domai 85.3 42 0.0009 33.3 22.9 172 430-623 3-189 (238)
151 PHA02713 hypothetical protein; 85.0 19 0.00041 41.5 14.9 152 467-626 352-532 (557)
152 KOG1538 Uncharacterized conser 84.9 76 0.0016 36.0 21.9 140 367-535 192-357 (1081)
153 PF08450 SGL: SMP-30/Gluconola 84.8 47 0.001 33.5 26.0 186 392-605 34-233 (246)
154 KOG0271 Notchless-like WD40 re 84.6 58 0.0013 34.4 20.6 101 192-298 177-277 (480)
155 PF14727 PHTB1_N: PTHB1 N-term 84.5 69 0.0015 35.2 32.9 146 233-383 145-316 (418)
156 KOG2096 WD40 repeat protein [G 84.2 54 0.0012 33.8 16.7 199 399-627 87-310 (420)
157 KOG1407 WD40 repeat protein [F 84.2 26 0.00057 35.0 12.9 144 400-578 66-216 (313)
158 KOG1188 WD40 repeat protein [G 84.1 57 0.0012 34.0 15.9 191 101-300 41-245 (376)
159 KOG4328 WD40 protein [Function 84.0 68 0.0015 34.8 20.1 202 213-438 184-399 (498)
160 PF12234 Rav1p_C: RAVE protein 83.4 24 0.00052 40.6 14.4 112 400-533 31-154 (631)
161 PHA03098 kelch-like protein; P 83.4 39 0.00084 38.8 16.8 135 467-611 343-492 (534)
162 KOG0295 WD40 repeat-containing 83.1 65 0.0014 33.8 21.6 248 192-474 128-395 (406)
163 KOG1034 Transcriptional repres 83.0 14 0.00029 38.1 10.8 108 458-581 95-211 (385)
164 KOG0640 mRNA cleavage stimulat 82.7 4.8 0.0001 40.8 7.5 137 376-534 193-334 (430)
165 KOG4441 Proteins containing BT 82.6 41 0.00088 38.8 16.2 190 404-617 328-533 (571)
166 KOG0288 WD40 repeat protein Ti 81.5 26 0.00056 37.3 12.5 99 152-259 321-424 (459)
167 KOG0771 Prolactin regulatory e 81.3 15 0.00033 38.9 10.8 144 371-535 201-354 (398)
168 KOG0321 WD40 repeat-containing 80.7 37 0.0008 38.2 13.9 152 466-627 63-250 (720)
169 PRK11138 outer membrane biogen 80.7 93 0.002 34.0 29.8 105 182-303 118-227 (394)
170 KOG0275 Conserved WD40 repeat- 80.5 74 0.0016 32.7 15.4 74 218-299 216-295 (508)
171 KOG0274 Cdc4 and related F-box 80.3 1.1E+02 0.0025 34.8 20.6 180 100-298 218-401 (537)
172 KOG0293 WD40 repeat-containing 80.1 89 0.0019 33.5 20.0 216 376-626 290-514 (519)
173 KOG0268 Sof1-like rRNA process 79.3 21 0.00045 37.3 10.8 270 216-533 67-343 (433)
174 KOG0308 Conserved WD40 repeat- 79.2 33 0.00071 38.7 12.9 176 431-626 96-286 (735)
175 PHA02713 hypothetical protein; 79.1 80 0.0017 36.4 17.2 138 467-613 304-470 (557)
176 PF08553 VID27: VID27 cytoplas 78.9 1.5E+02 0.0033 35.4 21.0 231 145-391 494-776 (794)
177 KOG4441 Proteins containing BT 78.8 49 0.0011 38.2 15.2 171 429-617 300-486 (571)
178 KOG1524 WD40 repeat-containing 78.4 1.2E+02 0.0025 33.8 26.8 153 467-653 331-501 (737)
179 PF04762 IKI3: IKI3 family; I 77.3 1.9E+02 0.0041 35.7 50.0 89 165-263 62-160 (928)
180 PF08662 eIF2A: Eukaryotic tra 77.2 74 0.0016 30.9 15.5 129 379-534 39-178 (194)
181 PF06433 Me-amine-dh_H: Methyl 77.1 1E+02 0.0023 32.6 25.9 231 244-498 67-323 (342)
182 PF04762 IKI3: IKI3 family; I 74.4 2.2E+02 0.0048 35.1 28.8 75 215-298 304-380 (928)
183 KOG0295 WD40 repeat-containing 74.2 1.2E+02 0.0026 31.9 15.6 104 146-258 239-370 (406)
184 KOG1524 WD40 repeat-containing 72.7 1.1E+02 0.0024 33.9 14.5 198 51-295 76-284 (737)
185 KOG1645 RING-finger-containing 72.2 19 0.00041 38.1 8.5 93 400-517 195-290 (463)
186 KOG0280 Uncharacterized conser 72.0 1.2E+02 0.0026 31.0 13.7 155 467-625 24-196 (339)
187 PF04053 Coatomer_WDAD: Coatom 71.3 1.5E+02 0.0033 33.0 16.0 29 390-419 23-52 (443)
188 PF14781 BBS2_N: Ciliary BBSom 71.2 57 0.0012 29.3 10.1 73 450-535 46-123 (136)
189 KOG0277 Peroxisomal targeting 71.1 1.2E+02 0.0026 30.5 19.5 77 7-93 36-112 (311)
190 KOG0269 WD40 repeat-containing 70.2 1.7E+02 0.0037 34.1 15.8 164 232-411 99-276 (839)
191 KOG3914 WD repeat protein WDR4 69.9 1E+02 0.0022 32.9 13.1 155 455-626 61-224 (390)
192 KOG0270 WD40 repeat-containing 69.8 91 0.002 33.6 12.9 97 193-298 265-361 (463)
193 PF00400 WD40: WD domain, G-be 69.5 11 0.00024 25.1 4.4 31 213-250 9-39 (39)
194 PF07433 DUF1513: Protein of u 69.3 81 0.0018 32.9 12.3 116 395-527 1-119 (305)
195 KOG0286 G-protein beta subunit 68.4 1.5E+02 0.0032 30.5 28.7 270 215-527 55-334 (343)
196 PF14783 BBS2_Mid: Ciliary BBS 68.2 81 0.0018 27.4 13.9 89 150-248 22-110 (111)
197 KOG0973 Histone transcription 68.1 2.8E+02 0.006 33.6 23.5 148 375-540 191-360 (942)
198 KOG0270 WD40 repeat-containing 68.1 32 0.00069 37.0 9.2 91 153-253 309-405 (463)
199 PF00325 Crp: Bacterial regula 67.8 7.8 0.00017 25.2 3.0 25 748-772 4-28 (32)
200 PF08596 Lgl_C: Lethal giant l 67.4 2E+02 0.0042 31.5 19.5 95 430-534 107-242 (395)
201 KOG0771 Prolactin regulatory e 67.3 28 0.0006 37.1 8.6 105 146-258 200-317 (398)
202 KOG0269 WD40 repeat-containing 66.0 24 0.00052 40.5 8.3 139 374-535 107-250 (839)
203 PF13360 PQQ_2: PQQ-like domai 64.2 1.5E+02 0.0033 29.2 22.9 172 430-626 46-231 (238)
204 PF11768 DUF3312: Protein of u 63.9 2.6E+02 0.0055 31.6 30.4 185 400-600 147-348 (545)
205 PF14779 BBS1: Ciliary BBSome 63.8 23 0.0005 35.8 7.0 70 455-533 18-95 (257)
206 KOG1240 Protein kinase contain 63.5 2E+02 0.0044 35.5 15.3 122 169-298 1094-1226(1431)
207 PF15390 DUF4613: Domain of un 63.3 1E+02 0.0022 34.9 12.2 75 390-476 328-406 (671)
208 KOG3617 WD40 and TPR repeat-co 63.0 18 0.0004 41.9 6.7 119 445-582 8-132 (1416)
209 PF14761 HPS3_N: Hermansky-Pud 62.6 31 0.00067 33.7 7.4 70 505-574 131-208 (215)
210 KOG1445 Tumor-specific antigen 61.4 66 0.0014 36.3 10.3 104 184-297 640-750 (1012)
211 PF09826 Beta_propel: Beta pro 61.2 2.9E+02 0.0064 31.5 18.0 109 406-529 278-390 (521)
212 PF15390 DUF4613: Domain of un 61.2 72 0.0016 36.0 10.6 92 466-570 123-220 (671)
213 KOG2114 Vacuolar assembly/sort 60.5 3.5E+02 0.0077 32.1 19.2 76 447-535 120-201 (933)
214 KOG3621 WD40 repeat-containing 60.3 19 0.00041 40.9 6.2 106 466-582 44-155 (726)
215 KOG0281 Beta-TrCP (transducin 59.6 1.3E+02 0.0029 31.4 11.4 250 235-534 209-476 (499)
216 KOG2919 Guanine nucleotide-bin 58.8 2E+02 0.0042 30.0 12.4 109 461-582 214-328 (406)
217 PF10433 MMS1_N: Mono-function 58.4 3.2E+02 0.007 31.0 46.2 325 185-535 1-388 (504)
218 COG5276 Uncharacterized conser 58.1 2.3E+02 0.005 29.3 13.3 133 490-627 64-201 (370)
219 PF14655 RAB3GAP2_N: Rab3 GTPa 56.4 1.2E+02 0.0027 33.2 11.6 40 446-495 51-97 (415)
220 KOG2066 Vacuolar assembly/sort 55.7 1E+02 0.0022 36.1 10.8 178 218-436 42-231 (846)
221 KOG0321 WD40 repeat-containing 55.4 39 0.00085 38.1 7.4 109 184-298 64-176 (720)
222 KOG0322 G-protein beta subunit 54.3 2.5E+02 0.0054 28.5 14.3 156 453-623 152-321 (323)
223 KOG4283 Transcription-coupled 53.6 2.7E+02 0.0058 28.6 17.2 91 430-534 124-218 (397)
224 KOG0301 Phospholipase A2-activ 53.3 3.3E+02 0.0072 31.4 14.1 107 177-298 182-289 (745)
225 PHA03098 kelch-like protein; P 52.7 1.6E+02 0.0034 33.7 12.7 136 467-611 295-442 (534)
226 KOG1332 Vesicle coat complex C 52.2 1.7E+02 0.0038 29.2 10.4 94 485-583 31-136 (299)
227 KOG1963 WD40 repeat protein [G 51.9 4.7E+02 0.01 31.0 31.2 108 215-340 205-319 (792)
228 KOG0274 Cdc4 and related F-box 51.8 4.2E+02 0.0091 30.4 26.0 110 177-298 211-320 (537)
229 KOG1240 Protein kinase contain 51.4 5.8E+02 0.013 31.9 18.9 104 186-298 1165-1274(1431)
230 PF02978 SRP_SPB: Signal pepti 51.3 24 0.00053 30.3 4.2 28 746-773 73-100 (104)
231 KOG3679 Predicted coiled-coil 50.9 97 0.0021 32.4 9.1 73 310-383 195-271 (802)
232 KOG1275 PAB-dependent poly(A) 50.0 1.9E+02 0.0042 34.4 12.0 145 99-250 186-340 (1118)
233 KOG4227 WD40 repeat protein [G 49.9 3.5E+02 0.0076 28.9 15.8 47 580-626 271-323 (609)
234 KOG0284 Polyadenylation factor 49.7 47 0.001 35.4 6.6 142 146-302 100-255 (464)
235 KOG0280 Uncharacterized conser 49.2 2.9E+02 0.0063 28.5 11.7 101 186-297 87-196 (339)
236 KOG0268 Sof1-like rRNA process 49.1 3.5E+02 0.0077 28.7 15.0 163 243-419 166-335 (433)
237 PF08728 CRT10: CRT10; InterP 48.7 55 0.0012 38.2 7.7 62 563-624 177-245 (717)
238 KOG0639 Transducin-like enhanc 48.1 1.6E+02 0.0034 32.5 10.2 101 183-296 603-703 (705)
239 PF06977 SdiA-regulated: SdiA- 47.5 3.2E+02 0.0069 27.7 22.2 191 213-417 19-240 (248)
240 KOG0286 G-protein beta subunit 47.1 3.4E+02 0.0074 28.0 29.2 182 216-418 98-293 (343)
241 PHA02790 Kelch-like protein; P 46.8 2.9E+02 0.0063 31.1 13.3 137 467-613 272-414 (480)
242 KOG0643 Translation initiation 45.1 3.5E+02 0.0076 27.5 19.9 221 326-575 22-255 (327)
243 PF07569 Hira: TUP1-like enhan 44.1 78 0.0017 31.4 7.2 38 212-258 9-46 (219)
244 COG1654 BirA Biotin operon rep 42.6 31 0.00066 28.0 3.2 26 747-772 20-45 (79)
245 KOG1063 RNA polymerase II elon 42.4 4.3E+02 0.0092 30.6 12.9 64 233-297 630-699 (764)
246 KOG0301 Phospholipase A2-activ 42.4 2.3E+02 0.0051 32.6 10.9 112 507-629 178-292 (745)
247 TIGR02276 beta_rpt_yvtn 40-res 42.0 1E+02 0.0023 20.6 5.7 39 233-273 3-41 (42)
248 PHA02790 Kelch-like protein; P 41.4 5.6E+02 0.012 28.8 14.9 129 467-613 319-453 (480)
249 KOG3621 WD40 repeat-containing 41.4 1.4E+02 0.003 34.4 9.1 111 512-626 39-155 (726)
250 PF14870 PSII_BNR: Photosynthe 39.4 4.7E+02 0.01 27.4 15.8 201 388-623 6-213 (302)
251 cd00216 PQQ_DH Dehydrogenases 38.8 6.2E+02 0.013 28.6 21.2 62 429-500 255-324 (488)
252 KOG4547 WD40 repeat-containing 37.6 6.5E+02 0.014 28.4 18.8 106 466-588 69-177 (541)
253 KOG0307 Vesicle coat complex C 37.5 1.9E+02 0.0041 35.2 9.8 79 212-298 113-193 (1049)
254 KOG0281 Beta-TrCP (transducin 36.9 1.1E+02 0.0024 31.9 6.9 110 177-298 363-478 (499)
255 PF14157 YmzC: YmzC-like prote 36.5 1.4E+02 0.0029 22.9 5.5 40 599-644 21-60 (63)
256 KOG0308 Conserved WD40 repeat- 36.4 7.2E+02 0.016 28.7 14.3 155 506-687 115-284 (735)
257 PF12341 DUF3639: Protein of u 36.2 1E+02 0.0023 19.2 4.1 25 174-198 1-25 (27)
258 PF13412 HTH_24: Winged helix- 35.8 41 0.00089 23.9 2.8 38 735-772 6-43 (48)
259 TIGR02276 beta_rpt_yvtn 40-res 34.7 1.4E+02 0.003 20.0 5.4 30 376-407 13-42 (42)
260 PF13543 KSR1-SAM: SAM like do 33.5 79 0.0017 28.3 4.7 39 735-773 90-128 (129)
261 COG3204 Uncharacterized protei 33.5 5.7E+02 0.012 26.6 18.8 92 215-316 85-178 (316)
262 KOG2314 Translation initiation 33.0 1.3E+02 0.0029 33.5 7.1 114 378-510 426-540 (698)
263 PF13545 HTH_Crp_2: Crp-like h 32.5 50 0.0011 26.1 3.2 24 749-772 31-54 (76)
264 KOG1332 Vesicle coat complex C 32.0 5.4E+02 0.012 25.9 18.3 229 184-420 23-278 (299)
265 PF08279 HTH_11: HTH domain; 31.9 59 0.0013 23.8 3.2 26 747-772 16-41 (55)
266 KOG1272 WD40-repeat-containing 31.5 1.8E+02 0.0038 31.8 7.6 88 429-533 272-360 (545)
267 KOG0642 Cell-cycle nuclear pro 31.1 5.3E+02 0.012 29.0 11.2 64 184-255 501-564 (577)
268 KOG1034 Transcriptional repres 30.6 6.6E+02 0.014 26.4 19.4 229 369-623 105-381 (385)
269 smart00036 CNH Domain found in 30.3 6.5E+02 0.014 26.3 14.7 54 468-535 14-73 (302)
270 KOG1898 Splicing factor 3b, su 30.2 4.6E+02 0.01 32.0 11.2 71 454-535 14-93 (1205)
271 PF13404 HTH_AsnC-type: AsnC-t 29.9 49 0.0011 23.0 2.3 38 734-771 5-42 (42)
272 PF05920 Homeobox_KN: Homeobox 29.7 92 0.002 21.5 3.5 28 745-772 12-39 (40)
273 PF15525 DUF4652: Domain of un 29.0 5.3E+02 0.011 24.8 10.1 91 423-521 81-175 (200)
274 PF10395 Utp8: Utp8 family; I 28.3 1E+03 0.022 28.0 13.4 112 406-534 35-158 (670)
275 KOG2695 WD40 repeat protein [G 28.2 3E+02 0.0066 29.0 8.3 67 184-256 264-333 (425)
276 PF05096 Glu_cyclase_2: Glutam 27.7 6.8E+02 0.015 25.6 18.0 89 428-533 66-155 (264)
277 PF12234 Rav1p_C: RAVE protein 27.6 7.7E+02 0.017 28.8 12.4 105 183-293 40-153 (631)
278 KOG0302 Ribosome Assembly prot 27.4 8E+02 0.017 26.3 11.5 96 193-297 279-378 (440)
279 COG3386 Gluconolactonase [Carb 27.4 7.4E+02 0.016 26.0 14.4 144 468-616 122-277 (307)
280 KOG0313 Microtubule binding pr 26.5 4.7E+02 0.01 28.0 9.4 100 467-579 115-221 (423)
281 PF02023 SCAN: SCAN domain; I 26.4 1.2E+02 0.0025 25.7 4.3 45 730-774 43-88 (95)
282 smart00550 Zalpha Z-DNA-bindin 25.2 96 0.0021 24.2 3.4 37 737-773 11-49 (68)
283 KOG0649 WD40 repeat protein [G 25.0 7.2E+02 0.016 25.0 17.8 198 2-223 27-254 (325)
284 PF08309 LVIVD: LVIVD repeat; 24.8 2E+02 0.0042 20.1 4.5 24 556-579 4-27 (42)
285 smart00419 HTH_CRP helix_turn_ 24.8 95 0.0021 21.6 3.2 26 747-772 9-34 (48)
286 KOG0639 Transducin-like enhanc 24.5 9.7E+02 0.021 26.7 11.5 63 233-298 477-540 (705)
287 PF14781 BBS2_N: Ciliary BBSom 24.3 5.4E+02 0.012 23.3 11.8 110 235-350 12-132 (136)
288 KOG0290 Conserved WD40 repeat- 24.2 8.1E+02 0.018 25.4 11.8 37 212-254 193-229 (364)
289 PF09288 UBA_3: Fungal ubiquit 24.0 1.3E+02 0.0028 22.4 3.6 39 733-771 8-54 (55)
290 KOG4499 Ca2+-binding protein R 23.0 6.7E+02 0.014 25.2 9.2 62 401-476 214-275 (310)
291 PF11972 HTH_13: HTH DNA bindi 22.4 1.5E+02 0.0033 22.0 3.7 36 736-771 3-38 (54)
292 cd00934 PTB Phosphotyrosine-bi 22.3 1.9E+02 0.0042 25.1 5.4 38 144-184 42-79 (123)
293 PF13936 HTH_38: Helix-turn-he 22.3 1.7E+02 0.0038 20.4 4.0 31 737-768 12-42 (44)
294 KOG0264 Nucleosome remodeling 22.1 3.8E+02 0.0082 29.1 8.0 76 213-298 270-348 (422)
295 smart00320 WD40 WD40 repeats. 21.9 1.5E+02 0.0033 17.7 3.7 29 215-250 12-40 (40)
296 KOG3914 WD repeat protein WDR4 21.6 2.8E+02 0.0061 29.7 6.9 64 563-626 74-138 (390)
297 COG5170 CDC55 Serine/threonine 21.5 3.2E+02 0.0068 28.3 6.9 146 451-625 85-252 (460)
298 COG3386 Gluconolactonase [Carb 21.3 9.6E+02 0.021 25.2 11.5 138 484-626 34-194 (307)
299 PF13730 HTH_36: Helix-turn-he 21.3 1.2E+02 0.0026 22.1 3.2 25 748-772 27-51 (55)
300 PF08220 HTH_DeoR: DeoR-like h 21.3 1.1E+02 0.0025 22.8 3.0 27 746-772 14-40 (57)
301 PF02042 RWP-RK: RWP-RK domain 21.1 2E+02 0.0043 21.3 4.0 35 732-769 4-38 (52)
302 KOG4143 Sigma receptor and C-8 21.1 1.1E+02 0.0023 28.5 3.3 38 737-774 25-66 (218)
303 PRK14131 N-acetylneuraminic ac 21.0 5.5E+02 0.012 27.7 9.7 123 487-612 189-349 (376)
304 PRK01742 tolB translocation pr 20.7 1.1E+03 0.024 25.9 12.2 148 475-627 172-324 (429)
305 PF11239 DUF3040: Protein of u 20.5 65 0.0014 26.3 1.7 21 686-706 2-22 (82)
306 PF08662 eIF2A: Eukaryotic tra 20.2 7.8E+02 0.017 23.6 13.5 97 377-495 83-179 (194)
No 1
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=100.00 E-value=4e-134 Score=1092.12 Aligned_cols=765 Identities=62% Similarity=0.994 Sum_probs=722.6
Q ss_pred CccceecCceEEEeecCCCCCCCcEEEeeeccCcCcccceEEecCCCCCCCeEEEEEecCCCCcEEEEecCCceeEEEee
Q 004094 1 MLTFYVLPKQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASV 80 (774)
Q Consensus 1 ~~~~~~gds~l~~~~~~~~~~~s~~~~~~~~~n~~Pi~D~~v~~~~~~~~~~l~~~sG~g~~g~L~~lr~gi~~~~~~~~ 80 (774)
|+||++|||||+||+..++. +||++.+++++|+|||.||+|++.++++|+++++|||++++|+||++|+|++.++.++.
T Consensus 321 FvGS~~gdSqLi~L~~e~d~-gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i 399 (1096)
T KOG1897|consen 321 FVGSRFGDSQLIKLNTEPDV-GSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASI 399 (1096)
T ss_pred EEeccCCceeeEEccccCCC-CchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEe
Confidence 78999999999999998876 89999999999999999999999988899999999999999999999999999999999
Q ss_pred eCCCcceeeeeecCCCCCCceEEEEEecCceEEEEecCCCCeeeeeecCccccCcceeeeecCCCeEEEEecCcEEEEec
Q 004094 81 ELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSS 160 (774)
Q Consensus 81 ~l~~~~~iw~~~~~~~~~~~~~li~S~~~~T~vl~~~~~~~~~e~~~~~f~~~~~Tl~~~~~~~~~~vQVT~~~i~l~~~ 160 (774)
++||+.++|+++...++++|.||++||+++|++|.+.+ +++|++++||.++++||||+.+..+.++|||+++||+++.
T Consensus 400 ~l~Gikg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~--e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss 477 (1096)
T KOG1897|consen 400 DLPGIKGMWSLKSMVDENYDNYLVLSFISETRVLNISE--EVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSS 477 (1096)
T ss_pred ecCCccceeEeeccccccCCcEEEEEeccceEEEEEcc--ceEEeccccccccCceEEEEccCCceEEEEecccEEEEcc
Confidence 99999999999977777889999999999999999987 4999999999999999999999888899999999999987
Q ss_pred CCCceeeeEeCCCCCcEEEEEECCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEE
Q 004094 161 TSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGM 240 (774)
Q Consensus 161 ~~~~~~~~~~~~~~~~I~~a~~~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~ 240 (774)
+. +.++|.+|.+..|..|+++..+++||..++.+.|+++..+.+.++.+..++.||+|++|+|.++++.++.+++||+
T Consensus 478 ~~--~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~ 555 (1096)
T KOG1897|consen 478 AG--LRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGL 555 (1096)
T ss_pred hh--hhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEe
Confidence 63 7899999998888888899889999998889999999887799999999999999999999887766788999999
Q ss_pred ecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecC-eeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEE
Q 004094 241 WTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEG-ISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLR 319 (774)
Q Consensus 241 ~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~-~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~ 319 (774)
|.+-.+.+..+||+.++..+.++.+.+|||+++..+++ ..+|+|+++||.++.|.++..+|.+.++|+.++|++|+.|+
T Consensus 556 Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr 635 (1096)
T KOG1897|consen 556 WSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLR 635 (1096)
T ss_pred ecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEE
Confidence 97778888889999998888888889999999998876 88999999999999999999999999999999999999999
Q ss_pred EEEeCCcceEEEecCCCeEEEecCCcEEEeeecccCceeeecccCCCCCCcEEEEeCCeEEEEEEcCCCCeEEEEEeCCC
Q 004094 320 TFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 399 (774)
Q Consensus 320 ~~~~~~~~~v~~~~~~p~~l~~~~~~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~ 399 (774)
.|++.+.+.+||+++|||++|..++++.|+|++.+.+..+|||++.++++++++++++.|.|++++..+++++|++|+++
T Consensus 636 ~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~ 715 (1096)
T KOG1897|consen 636 TFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGE 715 (1096)
T ss_pred EEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCC
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEecCCCEEEEEEeccCCC----CCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEee
Q 004094 400 HPRRICHQEQSRTFAICSLKNQSC----AEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTA 475 (774)
Q Consensus 400 tp~~i~y~~~~~~~~v~~~~~~~~----~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~ 475 (774)
+||||+|++.+.+|.|+|.+.+.. +++.+.+.++++|++|++++..++|+++|.++|+++++|.++...|++|||+
T Consensus 716 ~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~ 795 (1096)
T KOG1897|consen 716 SPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTG 795 (1096)
T ss_pred ChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEE
Confidence 999999999999999999997533 4577899999999999999999999999999999999999988999999999
Q ss_pred eeCCCCCCCcceEEEEEEEeC-CeEEEEEEEeecCceeEeccccCeEEEEECCEEEEEEeeecCCCchhhhhhcccccce
Q 004094 476 YVLPEENEPTKGRILVFIVED-GKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHI 554 (774)
Q Consensus 476 ~~~~~e~~~~~Grl~v~~i~~-~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~~ 554 (774)
+..|+|.+|..|||.+|+..+ ++|+++++++++|+|++++.|+|+|++|+|+.|.+|+|.. +++|...|....+.
T Consensus 796 ~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In~~vrLye~t~----~~eLr~e~~~~~~~ 871 (1096)
T KOG1897|consen 796 LVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGINQSVRLYEWTT----ERELRIECNISNPI 871 (1096)
T ss_pred eeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecCcEEEEEEccc----cceehhhhcccCCe
Confidence 999999999999999999997 8999999999999999999999999999999999999953 35677677777788
Q ss_pred EEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccCCcEEEEeeCCCCCCcccc
Q 004094 555 LALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEER 634 (774)
Q Consensus 555 ~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~~~~~~~~~ 634 (774)
.+.+|++.+|.|+|||+|+|+++++|+.+++.|+++|||+.|+|++++++++++.++++|++||+++++++.+++++.++
T Consensus 872 ~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR 951 (1096)
T KOG1897|consen 872 IALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEER 951 (1096)
T ss_pred EEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecCCCCchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeEEEEEcCcccceEEeeeeeecCCCCCCCCccEEEEEccccceEEEEecChhHHHHHHHHHHHHHhcccCCCCCCc
Q 004094 635 GRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNH 714 (774)
Q Consensus 635 ~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gsi~~i~~l~~~~~~~L~~lq~~l~~~~~~~~gl~~ 714 (774)
+.|+..+.||+|+.|++|+.+++.+..+++.....++++|||.+|+||.+..++++.+.+|..||++|++.++++||++|
T Consensus 952 ~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i~sl~~d~~~fL~~Lq~~irk~i~s~gglsH 1031 (1096)
T KOG1897|consen 952 QILEEVGKFHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGIIVSLPQDWYDFLEELQRRIRKVIKSVGGLSH 1031 (1096)
T ss_pred hcccceeeEEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEEEEecCcchhHHHHHHHHHHHHhhcccCCcch
Confidence 99999999999999999999999987445545567889999999999999999999999999999999999999999999
Q ss_pred ccccccccCcccCCCCcEEehhHHHHHhcCCHHHHHHHHHhcCCC-----HHHHHHHHHHHhccC
Q 004094 715 EQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVS-----VEELCKRVEELTRLH 774 (774)
Q Consensus 715 ~~~R~~~~~~~~~~~~~~iDGdll~~fl~l~~~~q~~i~~~~~~~-----~~~i~~~l~~l~~~~ 774 (774)
..||+++.+.+..|++|||||||+|+|++|+.+++.+|++++..+ +++|.+.||||+|||
T Consensus 1032 ~~yrsf~~e~~~~P~~gfIDGDLiEsfl~l~~~~~~~i~~~~~~~~~~~s~~el~k~vEel~rlh 1096 (1096)
T KOG1897|consen 1032 MDYRSFEFEKRTSPVKGFIDGDLIESFLDLSRSKMREIVRGLEHTESLASVQELLKIVEELTRLH 1096 (1096)
T ss_pred hhHhhhhcccccCCCcCcccchHHHhhhccCHHHHHHHHhhcccccccCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999755 999999999999999
No 2
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=100.00 E-value=9.1e-100 Score=827.36 Aligned_cols=747 Identities=26% Similarity=0.447 Sum_probs=667.3
Q ss_pred CccceecCceEEEeecCCCCCC---------------------CcEEEeeeccCcCcccceEEecCCCCCCCeEEEEEec
Q 004094 1 MLTFYVLPKQLIKLNLQPDAKG---------------------SYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGA 59 (774)
Q Consensus 1 ~~~~~~gds~l~~~~~~~~~~~---------------------s~~~~~~~~~n~~Pi~D~~v~~~~~~~~~~l~~~sG~ 59 (774)
|.+|.||+-+|+++...+..+. ..+..+++++|++|++|+.+++..+++.++|++|||+
T Consensus 348 f~~sE~~n~~lyq~~~LG~~~~~~s~~~~~~~~~~~~f~p~~l~nL~~~~~i~sl~p~~d~~I~~~~ne~~~qi~~~cg~ 427 (1205)
T KOG1898|consen 348 FVASEFGNHRLYQFEKLGEEDDDFSNAMTSEEGKSVFFEPRILKNLSPVSSVESLSPLLDISIGDDSNEDTPQIYSACGR 427 (1205)
T ss_pred EEhhhccCcceeehhhcCCCccchhhhcccccCcceeccccccccccchhhhhccCccceeEeeccCcccchhhhhhhCc
Confidence 4678999998888876551110 1257789999999999999999887888999999999
Q ss_pred CCCCcEEEEecCCceeEEEeeeCC-CcceeeeeecCCCCCCceEEEEEecCceEEEEecCCCCeeeeeecCccccCccee
Q 004094 60 YKDGSLRIVRNGIGINEQASVELQ-GIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLF 138 (774)
Q Consensus 60 g~~g~L~~lr~gi~~~~~~~~~l~-~~~~iw~~~~~~~~~~~~~li~S~~~~T~vl~~~~~~~~~e~~~~~f~~~~~Tl~ 138 (774)
+.+++|++||+|+...++...++| +.+.+|+++....+.+|.||++||++.|+|+++++ .++|++++||..+.+||+
T Consensus 428 ~~~sslr~lR~gle~sel~~t~lp~~~ta~WTvk~~~td~ydsyivvsF~n~TlVLsIge--sveEvtdsgFls~~~Tl~ 505 (1205)
T KOG1898|consen 428 GPRSSLRILRNGLEVSELLVTELPGNPTATWTVKKNITDVYDSYIVVSFVNGTLVLSIGE--SVEEVTDSGFLSTTPTLA 505 (1205)
T ss_pred CccccchhhccccchHHHhhhccCCCCceEEEEcCccccccceEEEEEeeccEEEEEcch--hHHHhhhcccccCCceEE
Confidence 999999999999999999999998 57899999987778899999999999999999984 699999999999999999
Q ss_pred eeecCCCeEEEEecCcEEEEecCCCceeeeEeCCCCCcEEEEEECCCEEEEEEcCCeEEEEEEcC-ceEEEE-EeccCCc
Q 004094 139 CHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGD-GILTEV-KHAQLEY 216 (774)
Q Consensus 139 ~~~~~~~~~vQVT~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~~~lvv~~~~~~~~~~~~~~-~~l~~~-~~~~l~~ 216 (774)
|+.+|++.+|||++++||.+-.+. .+.+|.+|.+.+|+.++++..+++|+++|++++||+++. |++.+. ++..++.
T Consensus 506 ~~l~Gd~slVQi~~d~iRhi~~~~--r~~ew~~P~~~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~ 583 (1205)
T KOG1898|consen 506 CSLMGDDSLVQIHPDGIRHIRPTK--RINEWKTPERVRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLST 583 (1205)
T ss_pred EEEecCCcEEEEchhhhhhccccc--ccccccCCCceEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeece
Confidence 999999999999999999998775 778999999999999999999999999999999999986 788886 7889999
Q ss_pred eeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCC---CCeeEEecCCCccCceeEEeeeec-------CeeEEEEEe
Q 004094 217 EISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD---LNLITKEHLGGEIIPRSVLLCAFE-------GISYLLCAL 286 (774)
Q Consensus 217 ~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~---~~~~~~~~l~~~~~p~si~~~~~~-------~~~~L~vgl 286 (774)
+++|+++.+.+.+++.++++++|+. +++++|++|.. +..++.+.++ ..|.++++++++ +..+|++|+
T Consensus 584 ~vac~ai~~~~~g~krsrfla~a~~-d~~vriisL~p~d~l~~ls~q~l~--~~~~s~~iv~~~~~~~~~~~~L~l~~GL 660 (1205)
T KOG1898|consen 584 DVACLAIGQDPEGEKRSRFLALASV-DNMVRIISLDPSDCLQPLSVQGLS--SPPESLCIVEMEATGGTDVAQLYLLIGL 660 (1205)
T ss_pred eehhhccCCCCcchhhcceeeeecc-ccceeEEEecCcceEEEccccccC--CCccceEEEEecccCCccceeEEEEecc
Confidence 9999999988888778999999999 99999999852 3444556665 478899888764 267899999
Q ss_pred CCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCeEEEecCCcEEEeeecccCceeeecccCCC
Q 004094 287 GDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAA 366 (774)
Q Consensus 287 ~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~~~~~~~~~~~~~~i~~~~~f~~~~ 366 (774)
+||.++++.+|..+|.+.+.|++++|.+||+|.|+...+.+.+++.+++||++|..+.++.+.|++..++..+++|.+..
T Consensus 661 ~NGvllR~~id~v~G~l~d~rtR~lG~~pvkLf~~~~~~~s~vL~lSsr~wl~y~~~~~~h~t~Isy~~l~~as~~~S~q 740 (1205)
T KOG1898|consen 661 RNGVLLRFVIDTVTGQLLDIRTRFLGLRPVKLFPISMRGQSDVLALSSRPWLLYTYQQEFHLTPISYSTLEHASPFCSEQ 740 (1205)
T ss_pred cccEEEEEEecccccceeeeheeeeccccceEEEEeecCcceeEEecCChhhhhhhcceeeeecccccchhccccccccC
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCeEEEEEEcCCC-CeEEEEEeCCCcccEEEEecCCCEEEEEEeccCC------------------CCC--
Q 004094 367 FPDSLAIAKEGELTIGTIDDIQ-KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQS------------------CAE-- 425 (774)
Q Consensus 367 ~~~~l~~~~~~~l~i~~l~~~~-~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~------------------~~~-- 425 (774)
||.+++++..+.++|..++... .++.+.+|++.||||+++||+++++++.+.++.+ .++
T Consensus 741 cpeGiv~i~~n~l~i~~~~~~g~~~n~~~~~l~~tprkvv~h~es~lLii~~td~~~~~~~~a~~~~~~~g~v~~s~~~~ 820 (1205)
T KOG1898|consen 741 CPEGIVAISKNTLRIIALDKLGKVLNVDGFPLAYTPRKVVIHPESGLLIIGRTDHNATLTKDARKNQMEAGGVLESGEEK 820 (1205)
T ss_pred CCcchhhhhhhhhheeeehhhcccccccccccccCcceEEEecCCCeEEEEEecccchhhHHHhhhhhhccccccccccc
Confidence 9999999999999999999884 6899999999999999999999999999888510 000
Q ss_pred ------c----------------------eeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCC-ceEEEEEeee
Q 004094 426 ------E----------------------SEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDS-NVYYCVGTAY 476 (774)
Q Consensus 426 ------~----------------------~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~-~~~i~VGT~~ 476 (774)
| .|.++++++|+.+.+.+..+++..||...|++.+.|++.. ..+++||+..
T Consensus 821 e~e~g~em~~~~~~~~~~~~v~~~p~a~~~w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~ 900 (1205)
T KOG1898|consen 821 EDEMGGEMEIIGREEVLPENVYGSPRAGNGWVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVAT 900 (1205)
T ss_pred chhhccchhhhccccccccccccCcccccCccceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeec
Confidence 0 1567899999999999999999999999999999888643 3699999987
Q ss_pred eCCCC-CCCcceEEEEEEEe--CCeEEEEEEEeecCceeEeccccCeEEEEECCEEEEEEeeecCCCchhhhhhccccc-
Q 004094 477 VLPEE-NEPTKGRILVFIVE--DGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHG- 552 (774)
Q Consensus 477 ~~~~e-~~~~~Grl~v~~i~--~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~- 552 (774)
...-+ ..-.+|++|.|++. +.+|+++|+++++|+|.|||+|+|++++++|+.+++|++ |+++|.++|....
T Consensus 901 ~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~LagvG~~l~~Ydl-----G~K~lLRk~e~k~~ 975 (1205)
T KOG1898|consen 901 TEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGVGRFLRLYDL-----GKKKLLRKCELKFI 975 (1205)
T ss_pred cccccccccCCCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEecccEEEEeeC-----ChHHHHhhhhhccC
Confidence 54211 11267999999998 358999999999999999999999999999999999994 7889999988876
Q ss_pred ceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccCCcEEEEeeCCCCCCcc
Q 004094 553 HILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDE 632 (774)
Q Consensus 553 ~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~~~~~~~ 632 (774)
...++++++.+.+|+|||+++|+.+++|++++++|..+|.|+.||||+++.++|+++++++|++||+++++.+++.....
T Consensus 976 p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P~d~~e~~ 1055 (1205)
T KOG1898|consen 976 PNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIPPDVSEEA 1055 (1205)
T ss_pred ceEEEEEeecceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecCCceeeccccCcEEEEECCCcchhhh
Confidence 34788899999999999999999999999999999999999999999999999999999999999999999987654321
Q ss_pred c------------------cceeeeEEEEEcCcccceEEeeeeeecCCCCCCCCccEEEEEccccceEEEEec-ChhHHH
Q 004094 633 E------------------RGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASL-PHEQYL 693 (774)
Q Consensus 633 ~------------------~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gsi~~i~~l-~~~~~~ 693 (774)
. .+|.+...+|++|+.+++++..+.. ...++.++|+|+.|+||+|.|+ ++++++
T Consensus 1056 ~edpt~~k~~~~~g~lN~~~~K~~~i~~f~v~Dvits~q~~~~i-------~~a~e~~iy~tl~GtiG~f~p~~s~~d~~ 1128 (1205)
T KOG1898|consen 1056 SEDPTELKIAWEQGFLNDAPQKVQLISQFFVGDVITSLQKVSSI-------PGARESLIYTTLLGTIGVFAPFLSREDVD 1128 (1205)
T ss_pred ccCCccccceecccccccccHhhhhhhhccccCeeeeceeeeec-------cCCcceeeeeeccccceEEeecccccchH
Confidence 1 2567889999999999999887654 2457899999999999999999 566899
Q ss_pred HHHHHHHHHHhcccCCCCCCcccccccccCcccCCCCcEEehhHHHHHhcCCHHHHHHHHHhcCCCHHHHHHHHHHHh
Q 004094 694 FLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELT 771 (774)
Q Consensus 694 ~L~~lq~~l~~~~~~~~gl~~~~~R~~~~~~~~~~~~~~iDGdll~~fl~l~~~~q~~i~~~~~~~~~~i~~~l~~l~ 771 (774)
+++.+|..|++..++++|.+|.+||++++ |.|.+|||||+++|+.|+..+|++||+.+++++++|.++||++|
T Consensus 1129 Ff~~~e~~~r~e~ppl~GrDH~~yRsyy~-----Pvk~VIDGDlceqF~~L~~~~Qe~va~el~~ti~eI~kkledir 1201 (1205)
T KOG1898|consen 1129 FFQHLEMHMRKEYPPLLGRDHLEYRSYYA-----PVKKVIDGDLCEQFLRLEENQQEEVAEELDRTIEEISKKLEDIR 1201 (1205)
T ss_pred HHHHHHHhccccCCcccCcchhhhhhhcc-----chhhcccHHHHHHHhhCCHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999 89999999999999999999999999999999999999999987
No 3
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=3.4e-97 Score=816.89 Aligned_cols=739 Identities=23% Similarity=0.335 Sum_probs=598.5
Q ss_pred EEEeeeccCcCcccceEEecCCC----------CC-CCeEEEEEecCCCCcEEEEecCCceeEEEeeeCCCcceeeeeec
Q 004094 25 VEVLERYVNLGPIVDFCVVDLER----------QG-QGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRS 93 (774)
Q Consensus 25 ~~~~~~~~n~~Pi~D~~v~~~~~----------~~-~~~l~~~sG~g~~g~L~~lr~gi~~~~~~~~~l~~~~~iw~~~~ 93 (774)
++++|+++|+|||.||++..... .+ .-++|+|+|.|++|.|+++|+.|+|++..+++++||.++|++..
T Consensus 463 fevcDsL~NIGPi~~~avG~~~~~~~~~~gl~~~~~~~elV~~sGhgkngaL~V~r~sI~P~i~t~fel~Gc~~iWtV~~ 542 (1366)
T KOG1896|consen 463 FEVCDSLPNIGPITDFAVGKRSSASEAVEGLSPHNKCLELVATSGHGKNGALSVIRRSIRPEIATEFELPGCVDIWTVFI 542 (1366)
T ss_pred EeehhccccccccccceeccccchhhhccCCCCCCCeEEEEEeccCCCCcceEEEeecccceeeEEEEecCeeeEEEEEE
Confidence 69999999999999999976431 12 26899999999999999999999999999999999999999975
Q ss_pred CC-----CCCCceEEEEEecCceEEEEecCCCCeeeeeecCccccCcceeeeecCCC-eEEEEecCcEEEEecCCCceee
Q 004094 94 ST-----DDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYN-QLVQVTSGSVRLVSSTSRELRN 167 (774)
Q Consensus 94 ~~-----~~~~~~~li~S~~~~T~vl~~~~~~~~~e~~~~~f~~~~~Tl~~~~~~~~-~~vQVT~~~i~l~~~~~~~~~~ 167 (774)
.. .+..+.|+++|..++|+||+.++ ++.|++.++|..+++||++|+++++ ++|||||+++|+++.+. ..++
T Consensus 543 ~~~~~~~~~~~h~~lilS~e~~t~il~tge--~~~Ev~~s~f~~~~~Tl~~gnlg~~rriVQVtp~~~rllDg~~-r~lq 619 (1366)
T KOG1896|consen 543 KGRKREEDNTQHLYLILSTESRTMILETGE--ELLEVSGSGFTRDGPTLFAGNLGNERRIVQVTPSGLRLLDGDL-RMLQ 619 (1366)
T ss_pred eccccccccCcceEEEeecccchhhhhccc--hhhhcccceeEeccceEEEEecCCceEEEEEccceeEEecCcc-hhee
Confidence 32 12347899999999999997654 6999999999999999999999876 99999999999999864 4677
Q ss_pred eEeCCCCCcEEEEEECCCEEEEEEcCCeEEEEEEcCc--eEEEEEe-----------ccCCceeEEEE-e----------
Q 004094 168 EWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDG--ILTEVKH-----------AQLEYEISCLD-I---------- 223 (774)
Q Consensus 168 ~~~~~~~~~I~~a~~~~~~lvv~~~~~~~~~~~~~~~--~l~~~~~-----------~~l~~~is~l~-~---------- 223 (774)
....+.+..++.+++.+..++|...++.+..|.++.+ +|..-.. ..+..-++-+. +
T Consensus 620 ~i~fd~~~~vv~~sv~dpyv~v~~~~g~i~~~~l~~~s~rl~~~~~~s~~~~sv~~~~dlsg~f~~~s~l~~k~~~~~gr 699 (1366)
T KOG1896|consen 620 RIPFDSGAIVVQTSVADPYVAVRSSEGRITLYDLEEKSHRLALHDPMSFKVVSVSLPADLSGMFTTLSDLSLKGNEANGR 699 (1366)
T ss_pred EeccccCCcEEEEeccCceEEEEEcCCceEEEEeccccchhhccCcccceeEEEechhhhccceEEEeeecccCcccccc
Confidence 7777777777888876666666666777777777542 1111000 01111111000 0
Q ss_pred -C------CCC----CCC----CCcceEEEEEecCCEEEEEECCCCCeeEEecC---------------C-CccCcee--
Q 004094 224 -N------PIG----ENP----SYSQIAAVGMWTDISVRIFSLPDLNLITKEHL---------------G-GEIIPRS-- 270 (774)
Q Consensus 224 -~------~~~----~~~----~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l---------------~-~~~~p~s-- 270 (774)
. ..+ +.+ ....++++.+..+|.++||++|++..++.... + .....++
T Consensus 700 ~~~~~~~~~~~~kv~~~egg~~~~~~~~~~~~~e~g~leiy~~pd~~lVf~v~~f~~~~~~L~~~~~~~~~~~~~s~~~~ 779 (1366)
T KOG1896|consen 700 SSEAEGLQSLPCKVDDEEGGSPEQEPYWCVFVTESGTLEIYALPDFDLVFEVDMFDTGNRVLMDSRLRGPTTNKESEDLE 779 (1366)
T ss_pred cccccccccCCccccCCCCCCcccCceEEEEEcCCCceEEEccCCcceEEEeeccCCCcceEEeecccCccccccccchH
Confidence 0 000 000 00115555555599999999999888754211 0 0000111
Q ss_pred ---EEeeee-----cCeeEEEEEeCCCcEEEEEEec--CCCc--ccccee----------------ee----------cC
Q 004094 271 ---VLLCAF-----EGISYLLCALGDGHLLNFLLNM--KTGE--LTDRKK----------------VS----------LG 312 (774)
Q Consensus 271 ---i~~~~~-----~~~~~L~vgl~~G~l~~y~~~~--~~~~--l~~~~~----------------~~----------lG 312 (774)
+.+.++ ..+++|+.-..+|.+..|+..+ ..++ +.+++. .. .+
T Consensus 780 l~q~~~~~L~~e~~~~e~~L~lv~~~~eil~Ykaf~~~~~~~~~~~f~kvp~~~~~~~~~p~~~~~~~~~~~~e~~~~~~ 859 (1366)
T KOG1896|consen 780 LKQLFVNPLGSEIVFKEPHLFLVVSDNEILIYKAFPQLSQGNLKVFFKKVPHNLNIRTDKPHFLCKKREGGGAEEGASVS 859 (1366)
T ss_pred HHHhhccccchhhhccCCceEEEEeCceEEEEeeccccCccchhhhhhhCCHhhcccccCCcccchhhcccccccccccc
Confidence 111222 2468899999999999999875 2231 111110 00 11
Q ss_pred CCCeEEEEE-EeCCcceEEEecCCCeEEEe-cCCcEEEeeecc-cCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCC-
Q 004094 313 TQPITLRTF-SSKNTTHVFAASDRPTVIYS-SNKKLLYSNVNL-KEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDI- 387 (774)
Q Consensus 313 ~~pv~l~~~-~~~~~~~v~~~~~~p~~l~~-~~~~~~~~~~~~-~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~- 387 (774)
..-.++++| .+++++++|++|.+|+|+.. .++.++++|+.. .++.+++||++.+||++++|++ ++.++||.++..
T Consensus 860 ~~~~~m~~f~~i~ghsgvfv~Gs~P~~il~t~rg~lr~h~~~gngpv~sfapfhnvn~p~gfiyvd~~~~l~i~~lp~~~ 939 (1366)
T KOG1896|consen 860 VIVQRMTYFEDIGGHSGVFVTGSKPYLILLTFRGVLRFHPVFGNGPVGSFAPFHNVNCPRGFIYVDRQGELVICVLPEAL 939 (1366)
T ss_pred ceeeeEEeeccccCeeEEEEecCCceEEEEEcccccceeeeecCCcceeeeeeeccCCCcceEEECCCceEEEEEcchhc
Confidence 112467888 57889999999999966654 577788888775 6899999999999999999986 689999999886
Q ss_pred ---CCeEEEEEeCCCcccEEEEecCCCEEEEEEeccC------CCCCc-------------eeeeEEEEEECCCceEEEE
Q 004094 388 ---QKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQ------SCAEE-------------SEMHFVRLLDDQTFEFIST 445 (774)
Q Consensus 388 ---~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~------~~~~~-------------~~~~~l~l~d~~~~~~i~~ 445 (774)
++|+.|+||++.||+.++||++.+.|+|.++.+. ..+++ ..++.+.|++|.+|+.++.
T Consensus 940 ~Ydn~wPvkkIpl~~T~~~vvYh~e~~vy~v~t~~~~~~~~~~~d~~e~~~~~de~~~~p~~~~f~i~LisP~sw~vi~~ 1019 (1366)
T KOG1896|consen 940 SYDNKWPVKKIPLRKTPHQVVYHYEKKVYAVITSTPVPYERLGEDGEEEVISRDENVIHPEGEQFSIQLISPESWEVIDK 1019 (1366)
T ss_pred ccCCCCcccccccccchhheeeeccceEEEEEEeccceeeecccccccccccccccccccccccceeEEecCCccccccc
Confidence 4899999999999999999999999999987651 01111 2468999999999999999
Q ss_pred EECCCCceEEEEEEEEEcC-----CCceEEEEEeeeeCCCCCCCcceEEEEEEEe-----------CCeEEEEEEEeecC
Q 004094 446 YPLDTFEYGCSILSCSFSD-----DSNVYYCVGTAYVLPEENEPTKGRILVFIVE-----------DGKLQLIAEKETKG 509 (774)
Q Consensus 446 ~~~~~~E~~~si~~~~~~~-----~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~-----------~~kl~~~~~~~~~g 509 (774)
++|+++|++++++.+.+.. ++++|++|||++.. +|+.+++||+++|++. ++|+|.++.++++|
T Consensus 1020 iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~-gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KG 1098 (1366)
T KOG1896|consen 1020 IEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQ-GEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKG 1098 (1366)
T ss_pred cccCccceeeEEEEEEEEecccccCCcceEEEEEeecc-cccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhccc
Confidence 9999999999999999865 34899999999998 8999999999999998 46999999999999
Q ss_pred ceeEeccccCeEEEEECCEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEE
Q 004094 510 AVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEE 589 (774)
Q Consensus 510 ~v~~i~~~~~~lv~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~ 589 (774)
+|.++|.++|+|+.+.|+||++|+|+. .-.|.+++|.+.+.|+.++.+.+|+|++||+|+|++|++|++++.+|++
T Consensus 1099 tVsavceV~G~l~~~~GqKI~v~~l~r----~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL 1174 (1366)
T KOG1896|consen 1099 TVSAVCEVRGHLLSSQGQKIIVRKLDR----DSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSL 1174 (1366)
T ss_pred ceEEEEEeccEEEEccCcEEEEEEecc----CCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEE
Confidence 999999999999999999999999953 2369999999999999999999999999999999999999999999999
Q ss_pred EeccCCcceeEEEEEeeCCe---EEEEccCCcEEEEeeCCCCCCccccceeeeEEEEEcCcccceEEeeeeeecCCCCCC
Q 004094 590 RARDYNANWMSAVEILDDDI---YLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDV 666 (774)
Q Consensus 590 ~a~D~~~~~v~~~~~l~~~~---~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~ 666 (774)
++||..++.+++.+||.++. ++++|.+|||++|.|.|+++++..|+||.++++||+|..+++|.+.... ..+.-.
T Consensus 1175 ~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~~eS~~G~RLv~radfhvg~~vs~m~~lp~~--~~~e~~ 1252 (1366)
T KOG1896|consen 1175 LSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPENIESLSGQRLVRRADFHVGAHVSTMFRLPCH--QNAEFG 1252 (1366)
T ss_pred eecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCCccccCcceeeeeeeeEeccceeeeEecccc--ccchhc
Confidence 99999999999999998763 8899999999999999999999999999999999999999999875521 111011
Q ss_pred CCccEE--EEEccccceEEEEecChhHHHHHHHHHHHHHhcccCCCCCCcccccccccCc-ccCCCCcEEehhHHHHHhc
Q 004094 667 GQIPTV--IFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEK-KTVDAKNFLDGDLIESFLD 743 (774)
Q Consensus 667 ~~~~~i--l~~t~~Gsi~~i~~l~~~~~~~L~~lq~~l~~~~~~~~gl~~~~~R~~~~~~-~~~~~~~~iDGdll~~fl~ 743 (774)
.+.+.. +++|+||+++++.|++|+.||+|..||++|...++|+|||||++||..+... ...+.+.+|||++|.+|..
T Consensus 1253 ~~~~~~~~v~gtlDG~l~~~~Pl~e~~YRRL~~lQn~L~~~~~hv~GLNPr~yR~~~s~~~~~n~~r~ilDg~ll~~f~y 1332 (1366)
T KOG1896|consen 1253 SNSPMFYEVFGTLDGGLGHLVPLDEKTYRRLLMLQNALMDRLPHVGGLNPRAYRLLDSSLQLSNSLRSILDGELLNRFSY 1332 (1366)
T ss_pred cCCchhhhhhcccCCceeEEecCCHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhhccchhhhcCCCcccchHhHHHHhhc
Confidence 123333 4899999999999999999999999999999999999999999999988776 5678899999999999999
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Q 004094 744 LSRTRMDEISKTMNVSVEELCKRVEELTRL 773 (774)
Q Consensus 744 l~~~~q~~i~~~~~~~~~~i~~~l~~l~~~ 773 (774)
|+-++|.++|+++|+++.+|+++|-||.++
T Consensus 1333 l~~~er~elA~kiGt~~~eIl~DLvel~~~ 1362 (1366)
T KOG1896|consen 1333 LSMSEREELAHKIGTTRKEILDDLVELDRL 1362 (1366)
T ss_pred cchhhHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999875
No 4
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=100.00 E-value=8.1e-68 Score=563.02 Aligned_cols=729 Identities=16% Similarity=0.214 Sum_probs=547.2
Q ss_pred Cc-EEEeeeccCcCcccceEEecCC--------CCCCCeEEEEEecCCCCcEEEEecCCceeEEEeeeCCCcceeeeeec
Q 004094 23 SY-VEVLERYVNLGPIVDFCVVDLE--------RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRS 93 (774)
Q Consensus 23 s~-~~~~~~~~n~~Pi~D~~v~~~~--------~~~~~~l~~~sG~g~~g~L~~lr~gi~~~~~~~~~l~~~~~iw~~~~ 93 (774)
+| +++++.+.|.|||.||++.+.+ +-+..++++.+|.+..|.|.+++..+.|++.+.+.+-++..+|+++.
T Consensus 469 p~d~el~~~l~n~gpitdfavgkv~v~kglP~pN~g~l~lV~t~G~ds~~~l~V~~ts~~P~I~~~~~fi~~e~vw~~kI 548 (1319)
T COG5161 469 PYDAELFNALSNAGPITDFAVGKVDVEKGLPIPNIGLLNLVVTKGSDSEAALAVEGTSLEPCICTVSSFIPLEIVWSQKI 548 (1319)
T ss_pred cchhHHhhhhccCCcccceeeeeccceecCCCCCccceeeEEeccCCCcceEEEEeccccceeeehccccchhheeehhc
Confidence 45 6889999999999999998754 12456899999999999999999999999999999999999999987
Q ss_pred CCC---CCCceEEEEEecCceEEEEecCCCCeeeeeecCccccCcceeeeecCCC-eEEEEecCcEEEEecCCCceeeeE
Q 004094 94 STD---DPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYN-QLVQVTSGSVRLVSSTSRELRNEW 169 (774)
Q Consensus 94 ~~~---~~~~~~li~S~~~~T~vl~~~~~~~~~e~~~~~f~~~~~Tl~~~~~~~~-~~vQVT~~~i~l~~~~~~~~~~~~ 169 (774)
... ...-.|.++|...+|.||+.++ ++.+.....|..+..|++.+.++++ ++|||||+.+++++.+. +.++.+
T Consensus 549 ~g~lr~~~~~~~~~ls~~s~S~If~~~e--~f~l~~~g~~~rd~~Tl~~~~fgee~rvVQvtp~~l~~yD~~l-R~l~~~ 625 (1319)
T COG5161 549 RGYLRCSRALDFYILSRVSDSRIFRWSE--EFLLEVSGEYTRDVNTLLFVEFGEENRVVQVTPSYLLRYDQDL-RMLGRV 625 (1319)
T ss_pred cceehhcceeeEEEeecccccceeeccc--cceeeecceeeccccEEEeeeccCcceEEEecchHhhhhcccc-eeeeeE
Confidence 531 1124688999999999998865 5777667889999999999999864 99999999999998775 344555
Q ss_pred eCCCCCcEEEEEEC-CCEEEEEEcCCeEEEEEEcC--ceEEEEEecc-CC-ceeEEEEeCCC--------C-CCCCCcce
Q 004094 170 KSPPGYSVNVATAN-ASQVLLATGGGHLVYLEIGD--GILTEVKHAQ-LE-YEISCLDINPI--------G-ENPSYSQI 235 (774)
Q Consensus 170 ~~~~~~~I~~a~~~-~~~lvv~~~~~~~~~~~~~~--~~l~~~~~~~-l~-~~is~l~~~~~--------~-~~~~~~~~ 235 (774)
.... +.|.+.++. ++.+++.. ++.+..|+.+. .+|.++.... +. ....++-+... . ...+....
T Consensus 626 ~F~~-~~V~~~Sv~Dp~ilvv~~-~g~i~~f~~~ekn~rL~k~dl~~~l~d~k~~s~v~~dsN~~g~f~ig~~~Sq~e~~ 703 (1319)
T COG5161 626 EFAS-RAVEARSVRDPLILVVRD-SGKILTFYDREKNMRLFKIDLVTCLADAKNKSFVLSDSNSLGIFDIGKRISQLEPC 703 (1319)
T ss_pred eece-eeeEEEeccCCEEEEEEe-cCceEEEEehhhhchhccCChHHHHHhhhhheEeccCcccccceecccchhhhchh
Confidence 4432 236666765 55555555 55555545543 2322221000 00 00111100000 0 00111222
Q ss_pred EEEEEecCCEEEEEECCCCCeeE---------------EecCCCcc--Cc--eeEEeeeec---CeeEEEEEeCCCcEEE
Q 004094 236 AAVGMWTDISVRIFSLPDLNLIT---------------KEHLGGEI--IP--RSVLLCAFE---GISYLLCALGDGHLLN 293 (774)
Q Consensus 236 ~~vg~~~~~~i~i~~l~~~~~~~---------------~~~l~~~~--~p--~si~~~~~~---~~~~L~vgl~~G~l~~ 293 (774)
+..++..+..+--..-+.+..+. +.++..+. .| ..+++..++ .++||+.-+..|+++.
T Consensus 704 l~~~~~~~~q~~~~~s~~~D~~~e~dg~dQlte~~~~~tynl~d~~f~lpsi~~~mVa~lg~D~keeyLf~~s~~~EI~~ 783 (1319)
T COG5161 704 LVKGLPYAIQFSPEASPAMDLAGEEDGDDQLTEISMSLTYNLIDMLFRLPSIGNYMVAYLGLDLKEEYLFDNSLSSEIVF 783 (1319)
T ss_pred hhhcCcccceeccccCcchhhccccccchhhhhHHHHHHHhhhhhhccChhhhhhhhHhhcccccchheehhhcCceEEE
Confidence 23232212222111111111111 11111111 23 122333333 3678999999999999
Q ss_pred EEEecCCCc---ccccee-eecCCCC-------------eEEEEEEeCCcceEEEecCCCeEEEecC-CcEEEeeecccC
Q 004094 294 FLLNMKTGE---LTDRKK-VSLGTQP-------------ITLRTFSSKNTTHVFAASDRPTVIYSSN-KKLLYSNVNLKE 355 (774)
Q Consensus 294 y~~~~~~~~---l~~~~~-~~lG~~p-------------v~l~~~~~~~~~~v~~~~~~p~~l~~~~-~~~~~~~~~~~~ 355 (774)
|+-...... +.-.|. ..+-..| +.+...+..|++.+|++|..|+++.+.. ..-.+.+..--+
T Consensus 784 yk~~l~r~~~f~~nvTRndlAitGaPdna~~Ka~sSV~ri~m~f~~~vghs~~fvTg~~pfl~~s~~~s~~k~f~~gNIP 863 (1319)
T COG5161 784 YKTHLPRHVSFNLNVTRNDLAITGAPDNADIKAFSSVGRIDMVFIKAVGHSFMFVTGKGPFLCRSRYTSSSKAFHRGNIP 863 (1319)
T ss_pred EeecccccchhhhhcchhhhhccCCCcchhhhhcccccceeEEEeeccCeEEEEEcCCccEEEEEeccCCcceeecCCCc
Confidence 986542210 100000 0111111 2333335668999999999999986642 222223333457
Q ss_pred ceeeecccCCCCCCcEEEEe-CCeEEEEEEcCC-----CCeEEEEEeCCCcccEEEEecCCCEEEEEEeccC---CCCCc
Q 004094 356 VSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDI-----QKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQ---SCAEE 426 (774)
Q Consensus 356 i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~-----~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~---~~~~~ 426 (774)
+.+++||+. .++++++ ...+++++.... ++|+.+++|++.|..+++||+....|+|.++.+. +.+|+
T Consensus 864 lvsv~p~s~----rgy~~Vd~~~~vr~~~~~~dn~y~gnK~p~k~~~~~Ktlqklvyh~~~~~~~Vgsc~~~~f~~~gEd 939 (1319)
T COG5161 864 LVSVIPLSK----RGYLMVDNVLGVRASQYVFDNGYVGNKNPVKRTPKHKTLQKLVYHCAGRYMVVGSCEEAGFSPKGED 939 (1319)
T ss_pred eeeeeeccc----ccEEEEecccceeEEEEEeccceecccCceeeccccccccceeeeccceEEEEEeeeecCccccCCC
Confidence 889999975 5777776 467888887554 4899999999999999999999999999888752 22222
Q ss_pred ---------------eeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcC-----CCceEEEEEeeeeCCCCCCCcc
Q 004094 427 ---------------SEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSD-----DSNVYYCVGTAYVLPEENEPTK 486 (774)
Q Consensus 427 ---------------~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~-----~~~~~i~VGT~~~~~~e~~~~~ 486 (774)
..++.+.|++|++|++|++|+|+++|.+.+++...+.. .+++||+|||++.. +|+.|.+
T Consensus 940 gE~~i~~D~Nvphaeg~~~~vdL~spksw~vID~yef~~ne~v~~i~~~~l~~~~~tk~k~pyi~vgtt~~~-gED~p~r 1018 (1319)
T COG5161 940 GESGIPVDTNVPHAEGYRFYVDLYSPKSWEVIDTYEFDENEYVFHIKYLILDDMQGTKGKSPYILVGTTFIE-GEDRPAR 1018 (1319)
T ss_pred CCccCccCCCCcccccceeeEEEecCcceeEeeeeecccceeeeeeeeeeeeccccccCCCceEEEEeeecc-cCccCCc
Confidence 35799999999999999999999999999999887754 35899999999988 8999999
Q ss_pred eEEEEEEEe-----------CCeEEEEEEEeecCceeEeccccCeEEEEECCEEEEEEeeecCCCchhhhhhcccccceE
Q 004094 487 GRILVFIVE-----------DGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHIL 555 (774)
Q Consensus 487 Grl~v~~i~-----------~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~ 555 (774)
|++++|+|. +.|||++..++++|.|.-+|+++|+++.|+|+||.++++++. + -++++++++.+++
T Consensus 1019 G~~hv~eII~VVP~pg~P~t~~KLK~~~~Ee~kGTV~~vcEV~G~~~~~qgqKV~Vr~i~~~-~---~iipV~F~Dl~~f 1094 (1319)
T COG5161 1019 GRLHVLEIISVVPSPGSPFTDCKLKVLGIEETKGTVVRVCEVRGKIALCQGQKVMVRKIDRS-S---GIIPVGFYDLHIF 1094 (1319)
T ss_pred CceEEEEEEEecCCCCCCcccceeeEEehhhcccEEEEEEEEccEEEeccCcEEEEEEeccc-C---CcceeEEEeeeee
Confidence 999999998 569999999999999999999999999999999999998642 3 4889999999999
Q ss_pred EEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCC---eEEEEccCCcEEEEeeCCCCCCcc
Q 004094 556 ALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD---IYLGAENNFNLFTVRKNSEGATDE 632 (774)
Q Consensus 556 ~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~---~~l~~D~~gnl~~l~~~~~~~~~~ 632 (774)
..++++.+|++++||++++++|+.|++++.+|+++++....+.+++.+||..+ .++++|.+||++.+.|+|+.+.+.
T Consensus 1095 t~s~k~~~Nlll~gD~~qg~~F~gF~~ePyRm~l~s~s~~~~n~~s~efLv~G~~lyf~~~Da~gnih~l~Y~P~np~S~ 1174 (1319)
T COG5161 1095 TSSIKVVKNLLLAGDIYQGLSFFGFQSEPYRMHLISSSEPLRNATSTEFLVTGNELYFLCCDAKGNIHGLTYSPNNPISM 1174 (1319)
T ss_pred eehhhhhhheeehhhhhcCcEEEEecCCcEEEEEecCCchhhcchhhHhhccCCeeEEEEEcCCCCEEEEecCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999764 378999999999999999999999
Q ss_pred ccceeeeEEEEEcCcccceEEeeeeeecCC--CCCCCCccEEEEEccccceEEEEecChhHHHHHHHHHHHHHhcccCCC
Q 004094 633 ERGRLEVVGEYHLGEFVNRFRHGSLVMRLP--DSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVG 710 (774)
Q Consensus 633 ~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~--~~~~~~~~~il~~t~~Gsi~~i~~l~~~~~~~L~~lq~~l~~~~~~~~ 710 (774)
.|+||..++.||+|+..++|.-. |+.. ........+.+|+-+||++.++.|++++.|++|..+|+++...+.++|
T Consensus 1175 sG~RLV~rssFtlhs~~~~m~ll---Prn~efG~~~~~~f~~v~~~sdG~l~~vvpisd~~YrrL~~IQ~~i~~r~~~vg 1251 (1319)
T COG5161 1175 SGARLVKRSSFTLHSAEIKMNLL---PRNSEFGAGFKKNFIMVYSRSDGMLIHVVPISDAHYRRLLGIQTAIMARLKSVG 1251 (1319)
T ss_pred CcceeEeeccccccchhhhhhhc---cchhhhCCCCCCceeEEEEccCCcEEEEeccCHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999887543 2221 123345568999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCc-ccCCCCcEEehhHHHHHhcCCHHHHHHHHHhcCCCH-HHHHHHHH
Q 004094 711 GLNHEQWRSFNNEK-KTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSV-EELCKRVE 768 (774)
Q Consensus 711 gl~~~~~R~~~~~~-~~~~~~~~iDGdll~~fl~l~~~~q~~i~~~~~~~~-~~i~~~l~ 768 (774)
||||++||-....+ ...+.+.++|+.+|.+|-.|+-+.|+++|+++|+-. .++++.|+
T Consensus 1252 GLNpr~yRL~~d~~~~~~s~r~~ld~~ii~~F~y~~~~~r~sva~kaGr~~~~e~~D~i~ 1311 (1319)
T COG5161 1252 GLNPRDYRLNSDIHLHSLSLRSPLDLHIINLFSYFDMSTRESVASKAGRIDRKEISDMIA 1311 (1319)
T ss_pred CCChhhhhhccCHHHhcCCcccchhhhhhhhhhhcchhhhhHHHhhcCCchHHHHHHHHH
Confidence 99999999765443 345678899999999999999999999999999764 35554443
No 5
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=100.00 E-value=1.4e-52 Score=446.42 Aligned_cols=310 Identities=38% Similarity=0.653 Sum_probs=257.8
Q ss_pred eeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCC---CceEEEEEeeeeCCCCCCCcceEEEEEEEeC-----CeEE
Q 004094 429 MHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDD---SNVYYCVGTAYVLPEENEPTKGRILVFIVED-----GKLQ 500 (774)
Q Consensus 429 ~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~---~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~-----~kl~ 500 (774)
+|+|+++|+.+|+++++++|+++|.++|++.|.|..+ .++||+|||++..+++..+.+|||++|++.+ .+|+
T Consensus 1 ~s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 1 ASSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp --EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred CcEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 3789999999999999999999999999999999875 4899999999998554445559999999997 3899
Q ss_pred EEEEEeecCceeEeccccCeEEEEECCEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEeccccEEEEEE
Q 004094 501 LIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIY 580 (774)
Q Consensus 501 ~~~~~~~~g~v~~i~~~~~~lv~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~ 580 (774)
++++++++|||++|+.++|+|++|+|++|++|+|+.. .+|.+.++++...+++++.+.+|+|++||+++|+++++|
T Consensus 81 ~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~----~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNS----KTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETT----SSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEE
T ss_pred EEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCc----ccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEE
Confidence 9999999999999999999999999999999999632 258899999988899999999999999999999999999
Q ss_pred EccCCeEEEEeccCCcceeEEEEEe-eCCeEEEEccCCcEEEEeeCCCCCCccccc-eeeeEEEEEcCcccceEEeeeee
Q 004094 581 KHEEGAIEERARDYNANWMSAVEIL-DDDIYLGAENNFNLFTVRKNSEGATDEERG-RLEVVGEYHLGEFVNRFRHGSLV 658 (774)
Q Consensus 581 ~~~~~~l~~~a~D~~~~~v~~~~~l-~~~~~l~~D~~gnl~~l~~~~~~~~~~~~~-~L~~~~~f~lg~~v~~~~~~~~~ 658 (774)
++++.+|.++|||+.++|++++.++ +++.++++|++||+++|+++++..++.+++ +|...++||+|+.|++++++++.
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI 236 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence 9988889999999999999999999 667899999999999999998888887888 99999999999999999999876
Q ss_pred ecCCCCCCCCccEEEEEccccceEEEEe-cChhHHHHHHHHHHHHHhcccCCCCCCcccccccccCcccCCCCcEEehhH
Q 004094 659 MRLPDSDVGQIPTVIFGTVNGVIGVIAS-LPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDL 737 (774)
Q Consensus 659 ~~~~~~~~~~~~~il~~t~~Gsi~~i~~-l~~~~~~~L~~lq~~l~~~~~~~~gl~~~~~R~~~~~~~~~~~~~~iDGdl 737 (774)
++..+.+....+.++|+|.+|+||.+.| ++++.|++|+.||++|.+.+++++|++|++||+++++ +...+++||||||
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l~p~l~~~~~~~L~~lQ~~l~~~~~~~~gl~~~~~R~~~~~-~~~~~~~~iDgdl 315 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVLIPFLSEEEYRFLQALQNNLRKHIPSLGGLNPRSFRSYKNP-RMKRSKGFIDGDL 315 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEEEE-E-HHHHHHHHHHHHHHHHHS--TTS--HHHHTSEEES-EEE--BSEEEHHH
T ss_pred ecCCCCcccccceEEEEecCCEEEEEEecCCHHHHHHHHHHHHHHHhhCCCCccCChHHhccccCc-cccCCCccCcHHH
Confidence 5411122224678999999999999999 8999999999999999999999999999999999986 3333899999999
Q ss_pred HHHHhc
Q 004094 738 IESFLD 743 (774)
Q Consensus 738 l~~fl~ 743 (774)
|++|++
T Consensus 316 l~~fl~ 321 (321)
T PF03178_consen 316 LEQFLE 321 (321)
T ss_dssp HHGGGG
T ss_pred HHHhhC
Confidence 999985
No 6
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=100.00 E-value=9.2e-33 Score=311.79 Aligned_cols=217 Identities=45% Similarity=0.738 Sum_probs=170.0
Q ss_pred CccceecCceEEEeecCCCCCCCcEEEeeeccCcCcccceEEecCCCCCCC------eEEEEEecCCCCcEEEEecCCce
Q 004094 1 MLTFYVLPKQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQG------QVVTCSGAYKDGSLRIVRNGIGI 74 (774)
Q Consensus 1 ~~~~~~gds~l~~~~~~~~~~~s~~~~~~~~~n~~Pi~D~~v~~~~~~~~~------~l~~~sG~g~~g~L~~lr~gi~~ 74 (774)
|+||++|||+|+|+... .++++++++|||||+||++++...+++. +|++|||.|++|+|+++|+|+++
T Consensus 272 f~gs~~gds~l~~~~~~------~l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~ 345 (504)
T PF10433_consen 272 FVGSEFGDSQLLQISLS------NLEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGI 345 (504)
T ss_dssp EEEESSS-EEEEEEESE------SEEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEE
T ss_pred EEEEecCCcEEEEEeCC------CcEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCc
Confidence 68999999999999943 3899999999999999999987655554 99999999999999999999999
Q ss_pred e--EEEeeeCCCcceeeeeecCCCCCCceEEEEEecCceEEEEecC---CCCeeeeeecCccccCcceeeeecCCCeEEE
Q 004094 75 N--EQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNL---EDELEETEIEGFCSQTQTLFCHDAIYNQLVQ 149 (774)
Q Consensus 75 ~--~~~~~~l~~~~~iw~~~~~~~~~~~~~li~S~~~~T~vl~~~~---~~~~~e~~~~~f~~~~~Tl~~~~~~~~~~vQ 149 (774)
+ .....++++++++|+++....+ +.||++|++++|+||+++. .++++|++..+|.++++||+|++++++.+||
T Consensus 346 ~~~~~~~~~l~~v~~iW~l~~~~~~--~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQ 423 (504)
T PF10433_consen 346 EGLELASSELPGVTGIWTLKLSSSD--HSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQ 423 (504)
T ss_dssp E--EEEEEEESTEEEEEEE-SSSSS--BSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEE
T ss_pred eeeeeeccCCCCceEEEEeeecCCC--ceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEE
Confidence 9 8888999999999999875433 8999999999999999962 3567777445999999999999999999999
Q ss_pred EecCcEEEEecCCCceeeeEeCCCCCcEEEEEECCCEEEEEEcCCeEEEEEEcCceEEEEEe----ccCCceeEEEEeCC
Q 004094 150 VTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKH----AQLEYEISCLDINP 225 (774)
Q Consensus 150 VT~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~~~lvv~~~~~~~~~~~~~~~~l~~~~~----~~l~~~is~l~~~~ 225 (774)
||+++||+++....+...+|.+|.+..|++|++++.+++|+..++.+++|+++...+..... ..++.+|+|+++.|
T Consensus 424 Vt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 424 VTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASINDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EESSEEEEEESSSTSEEEEEE-TTS---SEEEESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EecCeEEEEECCCCeEEEEEeCCCCCeEEEEEECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 99999999987777788999999999999999999999999999999999998755543222 24789999999865
No 7
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=2e-06 Score=93.07 Aligned_cols=408 Identities=15% Similarity=0.128 Sum_probs=212.5
Q ss_pred CCCcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEeccC-CceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEE
Q 004094 173 PGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQL-EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249 (774)
Q Consensus 173 ~~~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l-~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~ 249 (774)
.|..|=+.+++ +..+.|.+++|.+.+|.+.++.++-...+.- ...+-|+++.+ ....++.|+- ||.|.+|
T Consensus 109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~------~~~~i~~Gs~-Dg~Iriw 181 (691)
T KOG2048|consen 109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP------TGTKIAGGSI-DGVIRIW 181 (691)
T ss_pred CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC------CccEEEeccc-CceEEEE
Confidence 44566666655 5588888888888888877666654333322 36678888854 2455888888 9999999
Q ss_pred ECCCCCeeEEe--cC---CC--ccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEE-
Q 004094 250 SLPDLNLITKE--HL---GG--EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTF- 321 (774)
Q Consensus 250 ~l~~~~~~~~~--~l---~~--~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~- 321 (774)
++.....+... .+ .. ..+.=|+++++ ...+..|-..|.+..|.... |.|...-+...+. | ..+
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr---d~tI~sgDS~G~V~FWd~~~--gTLiqS~~~h~ad--V--l~La 252 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR---DSTIASGDSAGTVTFWDSIF--GTLIQSHSCHDAD--V--LALA 252 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEee---cCcEEEecCCceEEEEcccC--cchhhhhhhhhcc--e--eEEE
Confidence 99876555421 22 11 11222444332 34577788888887765443 4443321111111 1 112
Q ss_pred EeCCcceEEEecCCC-eEEEecCCc-EEEe-----eecccCceeeecccCCCCCCcEEEEeC--CeEEEEEEcCCC-CeE
Q 004094 322 SSKNTTHVFAASDRP-TVIYSSNKK-LLYS-----NVNLKEVSHMCPFNSAAFPDSLAIAKE--GELTIGTIDDIQ-KLH 391 (774)
Q Consensus 322 ~~~~~~~v~~~~~~p-~~l~~~~~~-~~~~-----~~~~~~i~~~~~f~~~~~~~~l~~~~~--~~l~i~~l~~~~-~~~ 391 (774)
-.+.++.+|+.|-.| .+-|...+. -.+. ......+.+++.+.+ +++..+ ..|.++.....+ .-+
T Consensus 253 v~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~------~l~sgG~d~~l~i~~s~~~~~~~h 326 (691)
T KOG2048|consen 253 VADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN------ALISGGRDFTLAICSSREFKNMDH 326 (691)
T ss_pred EcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc------eEEecceeeEEEEccccccCchhh
Confidence 123457899988555 444543221 1111 122245677776643 344432 334444433322 112
Q ss_pred EEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceee-eEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEE
Q 004094 392 IRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEM-HFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYY 470 (774)
Q Consensus 392 ~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~-~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i 470 (774)
.++.+....++ +.-.++ +.+.+.-... ..+.|+ ++.-.=-.....-+-.+..++.|.+.|.+.. ...+.|
T Consensus 327 ~~~~~~p~~~~-v~~a~~-~~L~~~w~~h---~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiS----Pdg~~I 397 (691)
T KOG2048|consen 327 RQKNLFPASDR-VSVAPE-NRLLVLWKAH---GVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAIS----PDGNLI 397 (691)
T ss_pred hccccccccce-eecCcc-ceEEEEeccc---cccceeccCcccccccChhhheeeecCCccceeeeccC----CCCCEE
Confidence 22222211111 111222 2222221111 000010 0100000123334456677788888776543 236889
Q ss_pred EEEeeeeCCCCCCCcceEEEEEEEe-CCeEEEEEEEeec---CceeEeccc--cCeEEEEECCEEEEEEeeecCCCchhh
Q 004094 471 CVGTAYVLPEENEPTKGRILVFIVE-DGKLQLIAEKETK---GAVYSLNAF--NGKLLAAINQKIQLYKWMLRDDGTREL 544 (774)
Q Consensus 471 ~VGT~~~~~~e~~~~~Grl~v~~i~-~~kl~~~~~~~~~---g~v~~i~~~--~~~lv~~~g~~l~v~~~~~~~~~~~~l 544 (774)
++||.. |+.+|++. .+++++..-.+.+ -++.++.-. +++++++..+..-+..++......+++
T Consensus 398 a~st~~-----------~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel 466 (691)
T KOG2048|consen 398 AISTVS-----------RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKEL 466 (691)
T ss_pred EEeecc-----------ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhh
Confidence 999953 55666665 2244333322221 233333322 455555443333333333222334566
Q ss_pred hhhcccccceEEEE--EEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEe--eCCeEEEEccCCcEE
Q 004094 545 QSECGHHGHILALY--VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEIL--DDDIYLGAENNFNLF 620 (774)
Q Consensus 545 ~~~~~~~~~~~~~~--l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l--~~~~~l~~D~~gnl~ 620 (774)
..........++.. .+.+||+|.|.+-...|.+ |+-+..+...+.-+.. ..+|++.+- +.+++++++.++.++
T Consensus 467 ~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v--~nl~~~~~~~l~~rln-~~vTa~~~~~~~~~~lvvats~nQv~ 543 (691)
T KOG2048|consen 467 KSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFV--YNLETLESHLLKVRLN-IDVTAAAFSPFVRNRLVVATSNNQVF 543 (691)
T ss_pred hccccccCCCcceeEEEcCCCCEEEEEeccceEEE--EEcccceeecchhccC-cceeeeeccccccCcEEEEecCCeEE
Confidence 65544322233333 3558999999997777766 5556666777775655 888888776 345788999999999
Q ss_pred EEeeC
Q 004094 621 TVRKN 625 (774)
Q Consensus 621 ~l~~~ 625 (774)
-|..+
T Consensus 544 efdi~ 548 (691)
T KOG2048|consen 544 EFDIE 548 (691)
T ss_pred EEecc
Confidence 88884
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.11 E-value=2.7e-06 Score=89.41 Aligned_cols=379 Identities=16% Similarity=0.164 Sum_probs=206.9
Q ss_pred cCCeEEEEEEcCc-eEEEEE-eccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCce
Q 004094 192 GGGHLVYLEIGDG-ILTEVK-HAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPR 269 (774)
Q Consensus 192 ~~~~~~~~~~~~~-~l~~~~-~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~ 269 (774)
++++++.|.-..| ++-+++ ......-|-+++.+|- +..++-. ..|.+++||.+.+.+++.+-.++.. ..
T Consensus 210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD------s~~~~T~-SaDkt~KIWdVs~~slv~t~~~~~~--v~ 280 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD------STQFLTV-SADKTIKIWDVSTNSLVSTWPMGST--VE 280 (603)
T ss_pred CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC------CceEEEe-cCCceEEEEEeeccceEEEeecCCc--hh
Confidence 4455555443332 233443 3345566777777652 3344433 3388999999998877766555432 22
Q ss_pred eEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCeEEEecCCc---E
Q 004094 270 SVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKK---L 346 (774)
Q Consensus 270 si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~~~~---~ 346 (774)
+..+--+=.+.+|+.-.-+|.+-.|+.+..+ .+ +.+.=-.+++.-.... .+...+|-.+-.-.+..++.+. -
T Consensus 281 dqqvG~lWqkd~lItVSl~G~in~ln~~d~~-~~---~~i~GHnK~ITaLtv~-~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 281 DQQVGCLWQKDHLITVSLSGTINYLNPSDPS-VL---KVISGHNKSITALTVS-PDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred ceEEEEEEeCCeEEEEEcCcEEEEecccCCC-hh---heecccccceeEEEEc-CCCCEEEeeccCceEEEEecCCcccc
Confidence 2222111124567777778888877765422 11 1111111222111111 1122232222222333332211 0
Q ss_pred EEe-eecccCceeeecccCCCCCCcEEEE-eCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCC
Q 004094 347 LYS-NVNLKEVSHMCPFNSAAFPDSLAIA-KEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCA 424 (774)
Q Consensus 347 ~~~-~~~~~~i~~~~~f~~~~~~~~l~~~-~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~ 424 (774)
++. ..+...|.+++.-.+ +.++-+ =++.|+...+....--....++++..|+-++-.++..+.+|+|..
T Consensus 356 ~~~g~~h~nqI~~~~~~~~----~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~----- 426 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMAASES----GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS----- 426 (603)
T ss_pred ccccccccceEEEEeecCC----CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecC-----
Confidence 000 001112222221110 112212 256666555533222223347999999999999888899999865
Q ss_pred CceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeE-EEEE
Q 004094 425 EESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKL-QLIA 503 (774)
Q Consensus 425 ~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl-~~~~ 503 (774)
.|.++...+.-..-...|+ ..+++. . ..+.+++||- ..|.+++|.+....+ +...
T Consensus 427 ------~iv~l~~~~~~~~~~~~y~----~s~vAv---~-~~~~~vaVGG----------~Dgkvhvysl~g~~l~ee~~ 482 (603)
T KOG0318|consen 427 ------DIVLLQDQTKVSSIPIGYE----SSAVAV---S-PDGSEVAVGG----------QDGKVHVYSLSGDELKEEAK 482 (603)
T ss_pred ------cEEEEecCCcceeeccccc----cceEEE---c-CCCCEEEEec----------ccceEEEEEecCCcccceee
Confidence 4666654332211112222 233332 1 3477899996 238899999987554 4445
Q ss_pred EEeecCceeEeccc-cCeEEEEE--CCEEEEEEeeecCCCchhhhhhcccccceEEEEEEEe-CC-EEEEEeccccEEEE
Q 004094 504 EKETKGAVYSLNAF-NGKLLAAI--NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTR-GD-FIVVGDLMKSISLL 578 (774)
Q Consensus 504 ~~~~~g~v~~i~~~-~~~lv~~~--g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~-~I~vgD~~~Sv~~~ 578 (774)
..++++++++|..- ++..+++. ..++.+|+...+ ..+..+-+++...+ .++.+. +| ++.-|-+-..|.++
T Consensus 483 ~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~---~~~~~~w~FHtakI--~~~aWsP~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 483 LLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASR---EVKTNRWAFHTAKI--NCVAWSPNNKLVATGSLDTNVIIY 557 (603)
T ss_pred eecccCCceEEEECCCCcEEEEeccCCcEEEEEcccC---ceecceeeeeeeeE--EEEEeCCCceEEEeccccceEEEE
Confidence 67889999999966 44455554 468889886422 22343444444333 445554 33 66668888888776
Q ss_pred EEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccCCcEEEEee
Q 004094 579 IYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRK 624 (774)
Q Consensus 579 ~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~ 624 (774)
..+.- .+ ....++.++..|+++.++++.+++.+-.+.|+.+...
T Consensus 558 sv~kP-~~-~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 558 SVKKP-AK-HIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred EccCh-hh-heEeccccccCceeEEEecCceEEeccCcceeEEecc
Confidence 65432 22 2778899999999999999999998888888876654
No 9
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.01 E-value=1.3e-06 Score=95.40 Aligned_cols=392 Identities=14% Similarity=0.142 Sum_probs=223.8
Q ss_pred EEEEecCcEEEEecCCCce-eeeEeCCCCCcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEe
Q 004094 147 LVQVTSGSVRLVSSTSREL-RNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDI 223 (774)
Q Consensus 147 ~vQVT~~~i~l~~~~~~~~-~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~ 223 (774)
+.-.+.+.|..++..+++. +......+...|++-++. +..++.+..+..+..++++.+++....+...+.++--|++
T Consensus 34 L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~ 113 (775)
T KOG0319|consen 34 LYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAF 113 (775)
T ss_pred EEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEE
Confidence 3334455555565555444 333333334467777755 3356656556666677887777776666667888888888
Q ss_pred CCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCC-ccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCc
Q 004094 224 NPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGE 302 (774)
Q Consensus 224 ~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~ 302 (774)
.+. +..++.|-- +|.+.+|++....+.+ .+.+ +.+..++++.+......|..|-.||.+..|++......
T Consensus 114 ~~~------g~LlAtgga-D~~v~VWdi~~~~~th--~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tc 184 (775)
T KOG0319|consen 114 DPT------GTLLATGGA-DGRVKVWDIKNGYCTH--SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTC 184 (775)
T ss_pred cCC------CceEEeccc-cceEEEEEeeCCEEEE--EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchH
Confidence 652 456777767 9999999998766644 3332 12445555544333455788999999999998753321
Q ss_pred cccceeeecCCCCeEEEEEEeCCcceEEEecC-CCeEEEec--CCcEEEeeecccCceeeecccCCCCCC-cEEEEeCC-
Q 004094 303 LTDRKKVSLGTQPITLRTFSSKNTTHVFAASD-RPTVIYSS--NKKLLYSNVNLKEVSHMCPFNSAAFPD-SLAIAKEG- 377 (774)
Q Consensus 303 l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~-~p~~l~~~--~~~~~~~~~~~~~i~~~~~f~~~~~~~-~l~~~~~~- 377 (774)
+.-. ..-.+.|.=..+..+ ...++..|. +...++.. ...++..|+. +.+.++.-.+.+.-.. .+++..++
T Consensus 185 l~~~---~~H~S~vtsL~~~~d-~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~~~~~~~~~TaG~~ 259 (775)
T KOG0319|consen 185 LHTM---ILHKSAVTSLAFSED-SLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREELGGKGEYIITAGGS 259 (775)
T ss_pred HHHH---HhhhhheeeeeeccC-CceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhcCCcceEEEEecCC
Confidence 1100 000111110111111 223444443 33334332 2335666766 5667777665532222 34555443
Q ss_pred -eEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEE
Q 004094 378 -ELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCS 456 (774)
Q Consensus 378 -~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~s 456 (774)
.++........-...++.+-++...+.++.+..+.++.++.+. .+.|+|..+.+...++ ...||+|..
T Consensus 260 g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQ----------nl~l~d~~~l~i~k~i-vG~ndEI~D 328 (775)
T KOG0319|consen 260 GVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQ----------NLFLYDEDELTIVKQI-VGYNDEILD 328 (775)
T ss_pred ceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccc----------eEEEEEccccEEehhh-cCCchhhee
Confidence 4444443333323344444344577888888888888888775 6889988877665544 346778888
Q ss_pred EEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEEEEC--CEEEEEE
Q 004094 457 ILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAIN--QKIQLYK 533 (774)
Q Consensus 457 i~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~~g--~~l~v~~ 533 (774)
|+.| .+..++++|.|+ ++++.+|+...-..+++. -+...|.++... .|-++++.+ +++.+|+
T Consensus 329 m~~l---G~e~~~laVATN----------s~~lr~y~~~~~~c~ii~--GH~e~vlSL~~~~~g~llat~sKD~svilWr 393 (775)
T KOG0319|consen 329 MKFL---GPEESHLAVATN----------SPELRLYTLPTSYCQIIP--GHTEAVLSLDVWSSGDLLATGSKDKSVILWR 393 (775)
T ss_pred eeec---CCccceEEEEeC----------CCceEEEecCCCceEEEe--CchhheeeeeecccCcEEEEecCCceEEEEE
Confidence 8765 334789999995 367888876655566554 347788888855 454555554 6889988
Q ss_pred eeecCCCchhhhhhcccccc---eEEEEEEEeCC-EEEEEeccccEEEEEEE
Q 004094 534 WMLRDDGTRELQSECGHHGH---ILALYVQTRGD-FIVVGDLMKSISLLIYK 581 (774)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~~~---~~~~~l~~~~~-~I~vgD~~~Sv~~~~~~ 581 (774)
++ ++..+....+...++ +.++.++.-+- +.+-+---..+.+..+.
T Consensus 394 ~~---~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~ 442 (775)
T KOG0319|consen 394 LN---NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLP 442 (775)
T ss_pred ec---CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCC
Confidence 83 222333333333333 23444433332 44444444445554443
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.31 E-value=0.011 Score=65.60 Aligned_cols=351 Identities=16% Similarity=0.189 Sum_probs=188.2
Q ss_pred ceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCc---cccceeee
Q 004094 234 QIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGE---LTDRKKVS 310 (774)
Q Consensus 234 ~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~---l~~~~~~~ 310 (774)
.-++|.+.+|+.|.+|+|.+..+..+.--. ..-.-.+++. ...|+.+.+++.+.+|++...+.+ .+......
T Consensus 161 ~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~-r~Eiw~l~~~----~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~ 235 (888)
T KOG0306|consen 161 DSFLVSVSKDSMIKFWDLETQHCFETHVDH-RGEIWALVLD----EKLLVTAGTDSELKVWELAFEDDEKETNRYISTKL 235 (888)
T ss_pred CeEEEEeccCceEEEEecccceeeeEEecc-cceEEEEEEe----cceEEEEecCCceEEEEeecccccccccccceeec
Confidence 456677778999999999886654332111 0112233333 256888999999999999543221 11111111
Q ss_pred cC-------CCCeEEEEEEeCCcceEEEecCCCeE----EEec-------CC-----cE-EEe-----eec---------
Q 004094 311 LG-------TQPITLRTFSSKNTTHVFAASDRPTV----IYSS-------NK-----KL-LYS-----NVN--------- 352 (774)
Q Consensus 311 lG-------~~pv~l~~~~~~~~~~v~~~~~~p~~----l~~~-------~~-----~~-~~~-----~~~--------- 352 (774)
.| .+++.|.. + .....+.|.|....+ +... .. +. ... .+.
T Consensus 236 ~G~~~rqsk~R~i~l~~-d-~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r 313 (888)
T KOG0306|consen 236 RGTFIRQSKGREINLVT-D-FSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKR 313 (888)
T ss_pred cceeeeccCCceeEEee-c-CcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHH
Confidence 22 23444432 1 112223333332221 1111 00 00 000 000
Q ss_pred ------ccCceeeecccCCCCCCcEEEEeCCeEEEEEEcCCCC-----eEEEEEeCCC---cccEEEEecCCCEEEEEEe
Q 004094 353 ------LKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQK-----LHIRSIPLGE---HPRRICHQEQSRTFAICSL 418 (774)
Q Consensus 353 ------~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~-----~~~~~i~l~~---tp~~i~y~~~~~~~~v~~~ 418 (774)
..-+.++.-.+....++.+++.+++.+....++...+ ..++.|.+++ .+|.++++.++. ++++.
T Consensus 314 ~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~--~~~Sg 391 (888)
T KOG0306|consen 314 LETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSI--LLASG 391 (888)
T ss_pred HHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCce--eeeec
Confidence 0112333333333334567788899999999887322 2344454443 467777776543 33332
Q ss_pred ccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe
Q 004094 419 KNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK 498 (774)
Q Consensus 419 ~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~k 498 (774)
. ..++++.+.++.+.+-+++-. .+.|.+.+ .+..|+++|+ ..|.|.+|++....
T Consensus 392 a---------~~SikiWn~~t~kciRTi~~~---y~l~~~Fv----pgd~~Iv~G~----------k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 392 A---------GESIKIWNRDTLKCIRTITCG---YILASKFV----PGDRYIVLGT----------KNGELQVFDLASAS 445 (888)
T ss_pred C---------CCcEEEEEccCcceeEEeccc---cEEEEEec----CCCceEEEec----------cCCceEEEEeehhh
Confidence 2 137999999999988877654 44544433 3578999999 56999999997543
Q ss_pred -EEEEEEEeecCceeEeccc---cCeEEEEECCEEEEEEeeecCC--Cch-hhhh---hc--ccccceEEEEEEEeCCEE
Q 004094 499 -LQLIAEKETKGAVYSLNAF---NGKLLAAINQKIQLYKWMLRDD--GTR-ELQS---EC--GHHGHILALYVQTRGDFI 566 (774)
Q Consensus 499 -l~~~~~~~~~g~v~~i~~~---~~~lv~~~g~~l~v~~~~~~~~--~~~-~l~~---~~--~~~~~~~~~~l~~~~~~I 566 (774)
++.+- .+.|++-+|+.. .|.+.++..++|.+|++..... |.+ +.+. .. ...-.+.+++++..+.++
T Consensus 446 l~Eti~--AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~L 523 (888)
T KOG0306|consen 446 LVETIR--AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLL 523 (888)
T ss_pred hhhhhh--ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEE
Confidence 33333 568888887766 2446677778999988753222 221 2111 11 111122334444457788
Q ss_pred EEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCC-eEEEEccCCcEEEEee
Q 004094 567 VVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD-IYLGAENNFNLFTVRK 624 (774)
Q Consensus 567 ~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~-~~l~~D~~gnl~~l~~ 624 (774)
.||=+-.-|.+|-.+.-.-.+.+-+ +...|.++..--+. .++.+-.+.|+-+.-.
T Consensus 524 aVsLLdnTVkVyflDtlKFflsLYG---HkLPV~smDIS~DSklivTgSADKnVKiWGL 579 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTLKFFLSLYG---HKLPVLSMDISPDSKLIVTGSADKNVKIWGL 579 (888)
T ss_pred EEEeccCeEEEEEecceeeeeeecc---cccceeEEeccCCcCeEEeccCCCceEEecc
Confidence 8887777787775554333333333 34556555533233 3555555666654444
No 11
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.31 E-value=0.00012 Score=72.53 Aligned_cols=263 Identities=19% Similarity=0.246 Sum_probs=151.4
Q ss_pred ceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEE
Q 004094 216 YEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFL 295 (774)
Q Consensus 216 ~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~ 295 (774)
..||.+.+.+ .+..++|++| ||++.+|+++..+........ .+ ++=..+.+....+.|.-||.+..|.
T Consensus 14 d~IS~v~f~~------~~~~LLvssW-DgslrlYdv~~~~l~~~~~~~--~p---lL~c~F~d~~~~~~G~~dg~vr~~D 81 (323)
T KOG1036|consen 14 DGISSVKFSP------SSSDLLVSSW-DGSLRLYDVPANSLKLKFKHG--AP---LLDCAFADESTIVTGGLDGQVRRYD 81 (323)
T ss_pred hceeeEEEcC------cCCcEEEEec-cCcEEEEeccchhhhhheecC--Cc---eeeeeccCCceEEEeccCceEEEEE
Confidence 4588998864 2567889999 999999999875432111111 01 1113455567899999999999999
Q ss_pred EecCCCccccceeeecCC--CCeEEEEEEeCCcceEEEec--CCCeEEEecCCcE-EEeeecccCceeeecccCCCCCCc
Q 004094 296 LNMKTGELTDRKKVSLGT--QPITLRTFSSKNTTHVFAAS--DRPTVIYSSNKKL-LYSNVNLKEVSHMCPFNSAAFPDS 370 (774)
Q Consensus 296 ~~~~~~~l~~~~~~~lG~--~pv~l~~~~~~~~~~v~~~~--~~p~~l~~~~~~~-~~~~~~~~~i~~~~~f~~~~~~~~ 370 (774)
++..+. .++|+ .|++..... -..+.+++| ++..-++..+++. ...--+.+.|.++. ...+.
T Consensus 82 ln~~~~-------~~igth~~~i~ci~~~--~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~-----v~g~~ 147 (323)
T KOG1036|consen 82 LNTGNE-------DQIGTHDEGIRCIEYS--YEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMD-----VSGNR 147 (323)
T ss_pred ecCCcc-------eeeccCCCceEEEEee--ccCCeEEEcccCccEEEEeccccccccccccCceEEEEe-----ccCCE
Confidence 886432 23443 455543221 123344444 2222222222111 00000111222222 12345
Q ss_pred EEE-EeCCeEEEEEEcCCC-CeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEE--
Q 004094 371 LAI-AKEGELTIGTIDDIQ-KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTY-- 446 (774)
Q Consensus 371 l~~-~~~~~l~i~~l~~~~-~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~-- 446 (774)
|++ ..+..+.+..+.+.. .+..|.-+++...|.|+..|...-|++.+.+- +-.+.++|+.....-..|
T Consensus 148 LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG--------RVavE~~d~s~~~~skkyaF 219 (323)
T KOG1036|consen 148 LVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEG--------RVAVEYFDDSEEAQSKKYAF 219 (323)
T ss_pred EEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecc--------eEEEEccCCchHHhhhceeE
Confidence 555 567888888888765 34566667888889999999888888887762 446667776410000111
Q ss_pred -----ECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeC-CeEEEEEEEeecCceeEecc--cc
Q 004094 447 -----PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVED-GKLQLIAEKETKGAVYSLNA--FN 518 (774)
Q Consensus 447 -----~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~-~kl~~~~~~~~~g~v~~i~~--~~ 518 (774)
..+..|.++.+-.+.|.. .+..++-|. +.|.+.+|+..+ ++|+.+++. ++.|.+++- -.
T Consensus 220 kCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgG----------sDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG 286 (323)
T KOG1036|consen 220 KCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGG----------SDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDG 286 (323)
T ss_pred EeeecccCCceEEEEeceeEecc-ccceEEecC----------CCceEEEccCcchhhhhhccCC--CCceEEEEeccCC
Confidence 224557777777776753 244455443 449999999984 468888866 454544443 23
Q ss_pred CeEEEEE
Q 004094 519 GKLLAAI 525 (774)
Q Consensus 519 ~~lv~~~ 525 (774)
..|++|.
T Consensus 287 ~~LAia~ 293 (323)
T KOG1036|consen 287 SLLAIAS 293 (323)
T ss_pred CeEEEEe
Confidence 3344443
No 12
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.29 E-value=0.0088 Score=63.43 Aligned_cols=380 Identities=14% Similarity=0.215 Sum_probs=205.2
Q ss_pred EEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEE----EeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEE
Q 004094 177 VNVATAN--ASQVLLATGGGHLVYLEIGDGILTEV----KHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFS 250 (774)
Q Consensus 177 I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~----~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~ 250 (774)
+..|+.. +..++|+...+.+.|++...+.|.+. ++.+- +-|.|+.|.+ ...++-|-. +|.|.||+
T Consensus 203 v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~e-------ngdviTgDS-~G~i~Iw~ 273 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLE-------NGDVITGDS-GGNILIWS 273 (626)
T ss_pred EEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccc-eEEEEEEEcC-------CCCEEeecC-CceEEEEe
Confidence 4455554 55888888888898887766555442 22222 6789999964 223444544 89999999
Q ss_pred CCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEE---------EEEecCCCccccceeeec--CCCCeEEE
Q 004094 251 LPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLN---------FLLNMKTGELTDRKKVSL--GTQPITLR 319 (774)
Q Consensus 251 l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~---------y~~~~~~~~l~~~~~~~l--G~~pv~l~ 319 (774)
-....+..... . -+ +..+-++-++||.|+. |. . ..+..+...+ -.-|++-.
T Consensus 274 ~~~~~~~k~~~-a---H~---------ggv~~L~~lr~GtllSGgKDRki~~Wd--~---~y~k~r~~elPe~~G~iRtv 335 (626)
T KOG2106|consen 274 KGTNRISKQVH-A---HD---------GGVFSLCMLRDGTLLSGGKDRKIILWD--D---NYRKLRETELPEQFGPIRTV 335 (626)
T ss_pred CCCceEEeEee-e---cC---------CceEEEEEecCccEeecCccceEEecc--c---cccccccccCchhcCCeeEE
Confidence 75544322111 1 11 2334445555555543 32 1 1111111111 11233332
Q ss_pred EEEeCCcceEEEecCCCeEEEec-CCcEEEe-eecccCceeeecccCCCCCCcEEEE-eCCeEEEEEEcCCCCeEEEEEe
Q 004094 320 TFSSKNTTHVFAASDRPTVIYSS-NKKLLYS-NVNLKEVSHMCPFNSAAFPDSLAIA-KEGELTIGTIDDIQKLHIRSIP 396 (774)
Q Consensus 320 ~~~~~~~~~v~~~~~~p~~l~~~-~~~~~~~-~~~~~~i~~~~~f~~~~~~~~l~~~-~~~~l~i~~l~~~~~~~~~~i~ 396 (774)
. + +...+++-..|-.++..+ ++++... ....+....++.-. ..+-|+-+ ....+.+.+ + .+ ..-+..
T Consensus 336 ~-e--~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp---s~~q~~T~gqdk~v~lW~-~--~k-~~wt~~ 405 (626)
T KOG2106|consen 336 A-E--GKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP---SKNQLLTCGQDKHVRLWN-D--HK-LEWTKI 405 (626)
T ss_pred e-c--CCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC---ChhheeeccCcceEEEcc-C--Cc-eeEEEE
Confidence 1 2 334466666777777665 3444322 22223344433221 11233333 356666666 2 22 223334
Q ss_pred CCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeee
Q 004094 397 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAY 476 (774)
Q Consensus 397 l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~ 476 (774)
+.+..+...|||.. .+++.+.. ...-++|-.+-..+.- .-+ +|.++++. +. ....+++||+-
T Consensus 406 ~~d~~~~~~fhpsg-~va~Gt~~----------G~w~V~d~e~~~lv~~-~~d-~~~ls~v~---ys-p~G~~lAvgs~- 467 (626)
T KOG2106|consen 406 IEDPAECADFHPSG-VVAVGTAT----------GRWFVLDTETQDLVTI-HTD-NEQLSVVR---YS-PDGAFLAVGSH- 467 (626)
T ss_pred ecCceeEeeccCcc-eEEEeecc----------ceEEEEecccceeEEE-Eec-CCceEEEE---Ec-CCCCEEEEecC-
Confidence 56677889999987 77777654 3667778777444433 223 88877765 33 34689999994
Q ss_pred eCCCCCCCcceEEEEEEEeCC--eEEEEEEEeecCceeEeccc-cCeEEEEECCEEEEEEeeecCCCchhhhh--hcccc
Q 004094 477 VLPEENEPTKGRILVFIVEDG--KLQLIAEKETKGAVYSLNAF-NGKLLAAINQKIQLYKWMLRDDGTRELQS--ECGHH 551 (774)
Q Consensus 477 ~~~~e~~~~~Grl~v~~i~~~--kl~~~~~~~~~g~v~~i~~~-~~~lv~~~g~~l~v~~~~~~~~~~~~l~~--~~~~~ 551 (774)
.+.||+|++..+ +++.+.+..- .|++.+.-- ++..+.+....-.+.-|... .-++..+ ...+.
T Consensus 468 ---------d~~iyiy~Vs~~g~~y~r~~k~~g-s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~--~~~~~ts~kDvkW~ 535 (626)
T KOG2106|consen 468 ---------DNHIYIYRVSANGRKYSRVGKCSG-SPITHLDWSSDSQFLVSNSGDYEILYWKPS--ECKQITSVKDVKWA 535 (626)
T ss_pred ---------CCeEEEEEECCCCcEEEEeeeecC-ceeEEeeecCCCceEEeccCceEEEEEccc--cCcccceecceeee
Confidence 379999999943 5555555544 788887643 44455544333333334221 1111111 01111
Q ss_pred cce----------------EEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCe-EEEEc
Q 004094 552 GHI----------------LALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI-YLGAE 614 (774)
Q Consensus 552 ~~~----------------~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~-~l~~D 614 (774)
+.. .+++-+-.++.+..||..--+.+++|-....+-.-.-.--+...++++.|+-++. ++.+-
T Consensus 536 t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg 615 (626)
T KOG2106|consen 536 TYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTG 615 (626)
T ss_pred eeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecC
Confidence 111 0112223567888999999999999875443322222234567899999997765 45444
Q ss_pred cCCcEEEEe
Q 004094 615 NNFNLFTVR 623 (774)
Q Consensus 615 ~~gnl~~l~ 623 (774)
+|-.++..+
T Consensus 616 ~D~Si~qW~ 624 (626)
T KOG2106|consen 616 KDTSIMQWR 624 (626)
T ss_pred CCceEEEEE
Confidence 666665443
No 13
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=0.0077 Score=60.40 Aligned_cols=144 Identities=15% Similarity=0.232 Sum_probs=98.6
Q ss_pred CCcEEEEe---CCeEEEEEEcCCCCeEEEEEeCCC----cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCc
Q 004094 368 PDSLAIAK---EGELTIGTIDDIQKLHIRSIPLGE----HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTF 440 (774)
Q Consensus 368 ~~~l~~~~---~~~l~i~~l~~~~~~~~~~i~l~~----tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~ 440 (774)
|++++++. ++.+++..+-...+=+.+++.++. .-..+.|+++.+.+++.+.. +.+.++|.-++
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~----------s~~~~lDAf~G 219 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA----------SFIYLLDAFDG 219 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC----------CcEEEEEccCC
Confidence 56777764 347888888776555566666652 34678999999887777644 57999999999
Q ss_pred eEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccC-
Q 004094 441 EFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNG- 519 (774)
Q Consensus 441 ~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~- 519 (774)
..+.+++..+++--..+. ..|.. ..+|++.|. ..|+|++|++..++-.........+++.++. ++-
T Consensus 220 ~~~~tfs~~~~~~~~~~~-a~ftP-ds~Fvl~gs----------~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~-fnP~ 286 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLS-ATFTP-DSKFVLSGS----------DDGTIHVWNLETGKKVAVLRGPNGGPVSCVR-FNPR 286 (311)
T ss_pred cEeeeEeeccCCCCccee-EEECC-CCcEEEEec----------CCCcEEEEEcCCCcEeeEecCCCCCCccccc-cCCc
Confidence 999999988887644332 33432 356776665 3499999999765544444434567777777 754
Q ss_pred e-EEEEECCEEEEEEe
Q 004094 520 K-LLAAINQKIQLYKW 534 (774)
Q Consensus 520 ~-lv~~~g~~l~v~~~ 534 (774)
+ .+++.+.++.+|-.
T Consensus 287 ~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 287 YAMFVSASSNLVFWLP 302 (311)
T ss_pred eeeeeecCceEEEEec
Confidence 3 56777788877654
No 14
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.22 E-value=0.0053 Score=62.89 Aligned_cols=272 Identities=17% Similarity=0.186 Sum_probs=143.9
Q ss_pred CCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEE
Q 004094 214 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLN 293 (774)
Q Consensus 214 l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~ 293 (774)
....|+|+++.+ ...+++++.. +|.+.+|++.+.+......... .....+...+ +..+++++..+|.+..
T Consensus 8 h~~~i~~~~~~~------~~~~l~~~~~-~g~i~i~~~~~~~~~~~~~~~~-~~i~~~~~~~--~~~~l~~~~~~~~i~i 77 (289)
T cd00200 8 HTGGVTCVAFSP------DGKLLATGSG-DGTIKVWDLETGELLRTLKGHT-GPVRDVAASA--DGTYLASGSSDKTIRL 77 (289)
T ss_pred cCCCEEEEEEcC------CCCEEEEeec-CcEEEEEEeeCCCcEEEEecCC-cceeEEEECC--CCCEEEEEcCCCeEEE
Confidence 346799999865 2467888877 9999999998655432211110 1112333332 3357888889999999
Q ss_pred EEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEe-c-CCCeEEEecC-CcEEE-eeecccCceeeecccCCCCCC
Q 004094 294 FLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAA-S-DRPTVIYSSN-KKLLY-SNVNLKEVSHMCPFNSAAFPD 369 (774)
Q Consensus 294 y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~-~-~~p~~l~~~~-~~~~~-~~~~~~~i~~~~~f~~~~~~~ 369 (774)
|++.... . .+.......++.-..+. ....+++. + +....++..+ ++... .......+.+++ |+.. ..
T Consensus 78 ~~~~~~~--~--~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~--~~ 148 (289)
T cd00200 78 WDLETGE--C--VRTLTGHTSYVSSVAFS--PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA-FSPD--GT 148 (289)
T ss_pred EEcCccc--c--eEEEeccCCcEEEEEEc--CCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE-EcCc--CC
Confidence 9886421 1 11111111122222221 12234444 3 3333344333 22211 111112333333 2211 22
Q ss_pred cEEEEe-CCeEEEEEEcCCCCeEEEEEeCC-CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEE
Q 004094 370 SLAIAK-EGELTIGTIDDIQKLHIRSIPLG-EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP 447 (774)
Q Consensus 370 ~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~-~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~ 447 (774)
.++... ++.+.+..+..... .+.+... ..+..+.+++..+.+++++.+ ..++++|..+++.+..+.
T Consensus 149 ~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----------~~i~i~d~~~~~~~~~~~ 216 (289)
T cd00200 149 FVASSSQDGTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSD----------GTIKLWDLSTGKCLGTLR 216 (289)
T ss_pred EEEEEcCCCcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCC----------CcEEEEECCCCceecchh
Confidence 333444 78888888764332 2233333 367889999988777777643 378999988777766553
Q ss_pred CCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEecccc-CeEEEEE-
Q 004094 448 LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFN-GKLLAAI- 525 (774)
Q Consensus 448 ~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~-~~lv~~~- 525 (774)
.. ...+.++. +..+ ..+++.|. ..|++++|++..++...... ...+++++++-.. +.++++.
T Consensus 217 ~~-~~~i~~~~---~~~~-~~~~~~~~----------~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 217 GH-ENGVNSVA---FSPD-GYLLASGS----------EDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred hc-CCceEEEE---EcCC-CcEEEEEc----------CCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEec
Confidence 22 22444443 3332 45555444 24899999987554333222 4467788887654 2433333
Q ss_pred -CCEEEEE
Q 004094 526 -NQKIQLY 532 (774)
Q Consensus 526 -g~~l~v~ 532 (774)
++.+.+|
T Consensus 281 ~d~~i~iw 288 (289)
T cd00200 281 ADGTIRIW 288 (289)
T ss_pred CCCeEEec
Confidence 3456654
No 15
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.21 E-value=0.019 Score=64.58 Aligned_cols=389 Identities=13% Similarity=0.109 Sum_probs=208.3
Q ss_pred CCeEEEEecCcEEEEecCCCceeeeEeCCCCCcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEeccC-CceeEE
Q 004094 144 YNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQL-EYEISC 220 (774)
Q Consensus 144 ~~~~vQVT~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l-~~~is~ 220 (774)
|..++=.+...+.+++..+++.+.++.. -+.+|+++.-. -+++.|.+.+|+++.|.+..++.. -++.. ...|+.
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~v~~f~~-~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil--~sFk~d~g~Vts 249 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKVVYTFQE-FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL--MSFKQDWGRVTS 249 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcEEEEecc-cccceeEeccCCcceEEEEeccCceEEEEEcccCcEE--EEEEccccceeE
Confidence 3344446667777777777666655543 22578887644 458888888999999988654432 23344 489999
Q ss_pred EEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEec-CCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecC
Q 004094 221 LDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEH-LGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMK 299 (774)
Q Consensus 221 l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~-l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~ 299 (774)
++|.. ++ ...++.|.- .|.+.+|+|++-.++.... .....++... -+.+++.|+-...|..+..|-+|..
T Consensus 250 lSFrt--DG---~p~las~~~-~G~m~~wDLe~kkl~~v~~nah~~sv~~~~---fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 250 LSFRT--DG---NPLLASGRS-NGDMAFWDLEKKKLINVTRNAHYGSVTGAT---FLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred EEecc--CC---CeeEEeccC-CceEEEEEcCCCeeeeeeeccccCCcccce---ecCCCceEeeccCCCceeEEEeeCC
Confidence 99953 22 456777766 8999999998755433211 1101122111 1235677777778899999999876
Q ss_pred CCccccceeeecCCCCeEEEEEEeCCcceEEEec---CCCeEEEec-----C---Cc---------EE-Eee--ecccCc
Q 004094 300 TGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS---DRPTVIYSS-----N---KK---------LL-YSN--VNLKEV 356 (774)
Q Consensus 300 ~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~---~~p~~l~~~-----~---~~---------~~-~~~--~~~~~i 356 (774)
+|..+..|.+.=-..|....+|- +.++.|+.+ |+.+..+.- + +. +. +.+ ...+++
T Consensus 321 dg~pR~LR~R~GHs~Pp~~irfy--~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i 398 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHSAPPSCIRFY--GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI 398 (910)
T ss_pred CCcchheeeccCCCCCchheeee--ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence 66544444333224554333332 344555543 343443321 0 11 00 000 111233
Q ss_pred eeeecccC-CCCCCcEEEEeCCeEEEEEEcCCCCeE------EEEE-eCCCcccEEEEecCCCEEEEEEeccCCCCCcee
Q 004094 357 SHMCPFNS-AAFPDSLAIAKEGELTIGTIDDIQKLH------IRSI-PLGEHPRRICHQEQSRTFAICSLKNQSCAEESE 428 (774)
Q Consensus 357 ~~~~~f~~-~~~~~~l~~~~~~~l~i~~l~~~~~~~------~~~i-~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~ 428 (774)
..++.=.. +...+.++.+..+.......+..++.. .++. +.+.+.+.++.++=.|..++.++.
T Consensus 399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~--------- 469 (910)
T KOG1539|consen 399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK--------- 469 (910)
T ss_pred eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccC---------
Confidence 33321111 122235555554444444433322111 1100 123345555555555544444433
Q ss_pred eeEEEEEECCCceEEEEE--ECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEe
Q 004094 429 MHFVRLLDDQTFEFISTY--PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE 506 (774)
Q Consensus 429 ~~~l~l~d~~~~~~i~~~--~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~ 506 (774)
+.|..++-+++-...+| .-...+.++.+.. |+.+-++|.++ ..|-+.+|+.+++. ++++..
T Consensus 470 -G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~-----D~~n~~~vsa~---------~~Gilkfw~f~~k~--l~~~l~ 532 (910)
T KOG1539|consen 470 -GTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAV-----DGTNRLLVSAG---------ADGILKFWDFKKKV--LKKSLR 532 (910)
T ss_pred -CeEEEEEcccCeeecccccCccccCceeEEEe-----cCCCceEEEcc---------CcceEEEEecCCcc--eeeeec
Confidence 36777777666555555 1234455555542 44455555553 56999999986533 666777
Q ss_pred ecCceeEecccc--CeEEEEEC-CEEEEEEeeecCCCchhhhhhcc-cccceEEEEEEEeCCEEEEEeccccEEE
Q 004094 507 TKGAVYSLNAFN--GKLLAAIN-QKIQLYKWMLRDDGTRELQSECG-HHGHILALYVQTRGDFIVVGDLMKSISL 577 (774)
Q Consensus 507 ~~g~v~~i~~~~--~~lv~~~g-~~l~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~l~~~~~~I~vgD~~~Sv~~ 577 (774)
...++.++.... +.++++.+ -.|.+++ ...++++|.-. +...+...+.+..|.-|+.+++-.++-+
T Consensus 533 l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD-----~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~ 602 (910)
T KOG1539|consen 533 LGSSITGIVYHRVSDLLAIALDDFSIRVVD-----VVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT 602 (910)
T ss_pred cCCCcceeeeeehhhhhhhhcCceeEEEEE-----chhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE
Confidence 777777777653 34444444 3456655 33456665422 3233444555556777777777677654
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.19 E-value=0.021 Score=63.58 Aligned_cols=407 Identities=14% Similarity=0.192 Sum_probs=207.6
Q ss_pred CCCCcEEEEEECCC--EEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEE
Q 004094 172 PPGYSVNVATANAS--QVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249 (774)
Q Consensus 172 ~~~~~I~~a~~~~~--~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~ 249 (774)
+.+..|..-+.+++ .++.....|..++..+.. + ..+.++.+...+.|+.++| ...+++||+ .+.++||
T Consensus 53 e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~-r-~Vlh~f~fk~~v~~i~fSP------ng~~fav~~--gn~lqiw 122 (893)
T KOG0291|consen 53 ETRYNITRIALSPDGTLLLAVDERGRALLVSLLS-R-SVLHRFNFKRGVGAIKFSP------NGKFFAVGC--GNLLQIW 122 (893)
T ss_pred ecCCceEEEEeCCCceEEEEEcCCCcEEEEeccc-c-eeeEEEeecCccceEEECC------CCcEEEEEe--cceeEEE
Confidence 35567888887754 555555566666665432 1 1234456778889998875 245666654 4578888
Q ss_pred ECCCC-C----e--eEEecC-----------CCc-----------------------cCce-------eEEeeeec-Cee
Q 004094 250 SLPDL-N----L--ITKEHL-----------GGE-----------------------IIPR-------SVLLCAFE-GIS 280 (774)
Q Consensus 250 ~l~~~-~----~--~~~~~l-----------~~~-----------------------~~p~-------si~~~~~~-~~~ 280 (774)
..|+. + + .+...+ ..+ ..|. .++-.-++ +..
T Consensus 123 ~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~ 202 (893)
T KOG0291|consen 123 HAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSL 202 (893)
T ss_pred ecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcc
Confidence 88752 2 1 011000 000 0010 11111122 456
Q ss_pred EEEEEeCCCcEEEEEEecCCCcc--------------------------ccce--eeecCCCCeEEEEEEeCCcceEEEe
Q 004094 281 YLLCALGDGHLLNFLLNMKTGEL--------------------------TDRK--KVSLGTQPITLRTFSSKNTTHVFAA 332 (774)
Q Consensus 281 ~L~vgl~~G~l~~y~~~~~~~~l--------------------------~~~~--~~~lG~~pv~l~~~~~~~~~~v~~~ 332 (774)
.|+.-.+||.+.+|+.+...+.. ...+ +..+-..++++++...+....++++
T Consensus 203 ~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvv 282 (893)
T KOG0291|consen 203 DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVV 282 (893)
T ss_pred eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEE
Confidence 68888899999999987211100 0011 1123333455554433333444444
Q ss_pred cCC--CeEEEecCCcEEEeee--cccCceeeecccCCCCCCcEEEEe--CCeEEEEEEcCCCCeEEEEEeCCCcccEEEE
Q 004094 333 SDR--PTVIYSSNKKLLYSNV--NLKEVSHMCPFNSAAFPDSLAIAK--EGELTIGTIDDIQKLHIRSIPLGEHPRRICH 406 (774)
Q Consensus 333 ~~~--p~~l~~~~~~~~~~~~--~~~~i~~~~~f~~~~~~~~l~~~~--~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y 406 (774)
|=. -..+|.--+--.++.+ ...+|..++ |+. -.+-+.+-. -++|.+.+..... +..|.-.=-.....++|
T Consensus 283 gFssG~f~LyelP~f~lih~LSis~~~I~t~~-~N~--tGDWiA~g~~klgQLlVweWqsEs-YVlKQQgH~~~i~~l~Y 358 (893)
T KOG0291|consen 283 GFSSGEFGLYELPDFNLIHSLSISDQKILTVS-FNS--TGDWIAFGCSKLGQLLVWEWQSES-YVLKQQGHSDRITSLAY 358 (893)
T ss_pred EecCCeeEEEecCCceEEEEeecccceeeEEE-ecc--cCCEEEEcCCccceEEEEEeeccc-eeeeccccccceeeEEE
Confidence 321 1222221111111222 222232222 321 123344333 2466666654422 11111100012346899
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcc
Q 004094 407 QEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTK 486 (774)
Q Consensus 407 ~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~ 486 (774)
+|+...++.++.+. .+|+.|..+.-++-+| .++-. .+..+.|.. ....++..+ --
T Consensus 359 SpDgq~iaTG~eDg----------KVKvWn~~SgfC~vTF--teHts--~Vt~v~f~~--~g~~llssS---------LD 413 (893)
T KOG0291|consen 359 SPDGQLIATGAEDG----------KVKVWNTQSGFCFVTF--TEHTS--GVTAVQFTA--RGNVLLSSS---------LD 413 (893)
T ss_pred CCCCcEEEeccCCC----------cEEEEeccCceEEEEe--ccCCC--ceEEEEEEe--cCCEEEEee---------cC
Confidence 99999888887653 6888887665444443 33222 222233432 233444443 24
Q ss_pred eEEEEEEEeCCe-EEEEEEEeecCceeEecc-c--cCeEEEEECCEE-EEEEeeecCCCchhhhh-hcccccceEEEEEE
Q 004094 487 GRILVFIVEDGK-LQLIAEKETKGAVYSLNA-F--NGKLLAAINQKI-QLYKWMLRDDGTRELQS-ECGHHGHILALYVQ 560 (774)
Q Consensus 487 Grl~v~~i~~~k-l~~~~~~~~~g~v~~i~~-~--~~~lv~~~g~~l-~v~~~~~~~~~~~~l~~-~~~~~~~~~~~~l~ 560 (774)
|++..|++++.+ ++. ...+.|+..-|. + .|-||+|-++.. -||-|+.+ .| +|+. ...+.+++...+.+
T Consensus 414 GtVRAwDlkRYrNfRT---ft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q-TG--qllDiLsGHEgPVs~l~f~ 487 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRT---FTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ-TG--QLLDILSGHEGPVSGLSFS 487 (893)
T ss_pred CeEEeeeecccceeee---ecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee-cC--eeeehhcCCCCcceeeEEc
Confidence 999999998654 222 223455543332 2 355666666543 35556543 23 3433 35566666666778
Q ss_pred EeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeC-CeEEEEccCCcEEEEeeCC
Q 004094 561 TRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDD-DIYLGAENNFNLFTVRKNS 626 (774)
Q Consensus 561 ~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~-~~~l~~D~~gnl~~l~~~~ 626 (774)
..++.++-|---+-|-++..-...++.+.+. .+..++++.|=.+ ..+.++--+|+|.+++...
T Consensus 488 ~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~---i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 488 PDGSLLASGSWDKTVRIWDIFSSSGTVETLE---IRSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred cccCeEEeccccceEEEEEeeccCceeeeEe---eccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 8888887787777776543322333444443 2345566666544 4577888999999999754
No 17
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.18 E-value=0.0095 Score=63.78 Aligned_cols=184 Identities=13% Similarity=0.114 Sum_probs=100.5
Q ss_pred CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEE-----EEECCCCceEEEEEEEEEcCCCceEEEE
Q 004094 398 GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIS-----TYPLDTFEYGCSILSCSFSDDSNVYYCV 472 (774)
Q Consensus 398 ~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~-----~~~~~~~E~~~si~~~~~~~~~~~~i~V 472 (774)
...|+.++++|+.+.++|+.... ..|.++|..+...+. ....+.++.+..+ .|..+ .+++.|
T Consensus 125 ~~~~~~~~~~p~g~~l~v~~~~~---------~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~---~~~pd-g~~lyv 191 (330)
T PRK11028 125 LEGCHSANIDPDNRTLWVPCLKE---------DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHM---VFHPN-QQYAYC 191 (330)
T ss_pred CCcccEeEeCCCCCEEEEeeCCC---------CEEEEEEECCCCcccccCCCceecCCCCCCceE---EECCC-CCEEEE
Confidence 35688888999888777766542 368888775532221 2344455555444 34433 345555
Q ss_pred EeeeeCCCCCCCcceEEEEEEEeC--CeEEEEEEEee-----cCcee--E--eccccCeEEEEE--CCEEEEEEeeecCC
Q 004094 473 GTAYVLPEENEPTKGRILVFIVED--GKLQLIAEKET-----KGAVY--S--LNAFNGKLLAAI--NQKIQLYKWMLRDD 539 (774)
Q Consensus 473 GT~~~~~~e~~~~~Grl~v~~i~~--~kl~~~~~~~~-----~g~v~--~--i~~~~~~lv~~~--g~~l~v~~~~~~~~ 539 (774)
... ..+.+.+|++.. ++++.+..... .++-. + +.+-+.+++++. .+.|.+|+++.. .
T Consensus 192 ~~~---------~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~-~ 261 (330)
T PRK11028 192 VNE---------LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED-G 261 (330)
T ss_pred Eec---------CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC-C
Confidence 432 358999999983 46766554321 22222 2 223234566664 368899887531 2
Q ss_pred CchhhhhhcccccceEEEEEEEeCCEEEEEec-cccEEEEEEEccCCeEEEEeccCCcceeEEEEE
Q 004094 540 GTRELQSECGHHGHILALYVQTRGDFIVVGDL-MKSISLLIYKHEEGAIEERARDYNANWMSAVEI 604 (774)
Q Consensus 540 ~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~-~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~ 604 (774)
+..++.........+..+.++..|.+++++.. -..+.+++.+.+.+.|..+.+=....+..++.+
T Consensus 262 ~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 262 SVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred CeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence 22223222111111223445557889999886 456888877766667766653222333334443
No 18
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.04 E-value=0.0019 Score=64.12 Aligned_cols=271 Identities=15% Similarity=0.210 Sum_probs=144.5
Q ss_pred CceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCC-CCeeEE--ecCCCccCceeEEeeeecCeeEEEEEeCCCcE
Q 004094 215 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD-LNLITK--EHLGGEIIPRSVLLCAFEGISYLLCALGDGHL 291 (774)
Q Consensus 215 ~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~-~~~~~~--~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l 291 (774)
+..||+|+|+|. ....++.|.| ||.+++|.+.+ ...+.+ ..++ .++-+++-. .+...++.|.-||.+
T Consensus 27 ~DsIS~l~FSP~-----~~~~~~A~SW-D~tVR~wevq~~g~~~~ka~~~~~--~PvL~v~Ws--ddgskVf~g~~Dk~~ 96 (347)
T KOG0647|consen 27 EDSISALAFSPQ-----ADNLLAAGSW-DGTVRIWEVQNSGQLVPKAQQSHD--GPVLDVCWS--DDGSKVFSGGCDKQA 96 (347)
T ss_pred ccchheeEeccc-----cCceEEeccc-CCceEEEEEecCCcccchhhhccC--CCeEEEEEc--cCCceEEeeccCCce
Confidence 456899999873 2467778999 99999999875 232222 1222 122233222 245789999999999
Q ss_pred EEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCC-CeEEEec-CCcEEEeeecc-cCceeeecccCCCCC
Q 004094 292 LNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDR-PTVIYSS-NKKLLYSNVNL-KEVSHMCPFNSAAFP 368 (774)
Q Consensus 292 ~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~-p~~l~~~-~~~~~~~~~~~-~~i~~~~~f~~~~~~ 368 (774)
-.|.+.. +. ...+..-..||+-.++-.+...-.+++|+= ..+=|++ +.......+.. +.+.++.-. .|
T Consensus 97 k~wDL~S--~Q---~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~----~p 167 (347)
T KOG0647|consen 97 KLWDLAS--GQ---VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL----YP 167 (347)
T ss_pred EEEEccC--CC---eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc----Cc
Confidence 9988764 22 223344456776555421112234455421 1111221 11111111111 112221111 11
Q ss_pred CcEEEEeCCeEEEEEEcCCC-CeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEE
Q 004094 369 DSLAIAKEGELTIGTIDDIQ-KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP 447 (774)
Q Consensus 369 ~~l~~~~~~~l~i~~l~~~~-~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~ 447 (774)
=.++...+..+.+.+|.+.. .+..-.-||+-..|.|+-.++...++++..+ .+-.|+-+|+.+- .+.|.
T Consensus 168 m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE--------Grv~iq~id~~~~--~~nFt 237 (347)
T KOG0647|consen 168 MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE--------GRVAIQYIDDPNP--KDNFT 237 (347)
T ss_pred eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec--------ceEEEEecCCCCc--cCcee
Confidence 12233458889999995543 2333334677777888888888888888765 2445666766311 11111
Q ss_pred CC-------CCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cC
Q 004094 448 LD-------TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG 519 (774)
Q Consensus 448 ~~-------~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~ 519 (774)
|+ -+..|+++-.+.|......+.-+|. -|++-+|+-+ .+-++......+.||++.+-- +|
T Consensus 238 FkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs-----------DGtf~FWDkd-ar~kLk~s~~~~qpItcc~fn~~G 305 (347)
T KOG0647|consen 238 FKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS-----------DGTFSFWDKD-ARTKLKTSETHPQPITCCSFNRNG 305 (347)
T ss_pred EEEeccCCCCCCceEEecceEeecccceEEEecC-----------CceEEEecch-hhhhhhccCcCCCccceeEecCCC
Confidence 11 1224566666656432234444443 3888888754 234444556678888876633 34
Q ss_pred e-EEEEEC
Q 004094 520 K-LLAAIN 526 (774)
Q Consensus 520 ~-lv~~~g 526 (774)
. +++|.|
T Consensus 306 ~ifaYA~g 313 (347)
T KOG0647|consen 306 SIFAYALG 313 (347)
T ss_pred CEEEEEee
Confidence 4 345655
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.02 E-value=0.044 Score=61.17 Aligned_cols=433 Identities=15% Similarity=0.170 Sum_probs=216.2
Q ss_pred ceEEEEEecCceEEEEecCCCCeeeeeecCccccC-------cceeeeecCCCeEEEEec--CcEEEEecCCCceeeeEe
Q 004094 100 DTFLVVSFISETRILAMNLEDELEETEIEGFCSQT-------QTLFCHDAIYNQLVQVTS--GSVRLVSSTSRELRNEWK 170 (774)
Q Consensus 100 ~~~li~S~~~~T~vl~~~~~~~~~e~~~~~f~~~~-------~Tl~~~~~~~~~~vQVT~--~~i~l~~~~~~~~~~~~~ 170 (774)
..+++++..+--.|++.++ ++++ +...|.... ......-..+++++-++. -.+|++..+..+...-.
T Consensus 108 g~~fav~~gn~lqiw~~P~--~~~~-~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~- 183 (893)
T KOG0291|consen 108 GKFFAVGCGNLLQIWHAPG--EIKN-EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTY- 183 (893)
T ss_pred CcEEEEEecceeEEEecCc--chhc-ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceE-
Confidence 4567777777666666554 2332 223333211 111111112345555532 34566654431111111
Q ss_pred CCCC--CcEEEEEE--CCCEEEEEEcCCeEEEEEEcC--c----------------------e-----E-EEEEeccCC-
Q 004094 171 SPPG--YSVNVATA--NASQVLLATGGGHLVYLEIGD--G----------------------I-----L-TEVKHAQLE- 215 (774)
Q Consensus 171 ~~~~--~~I~~a~~--~~~~lvv~~~~~~~~~~~~~~--~----------------------~-----l-~~~~~~~l~- 215 (774)
+-.| ..|++|-. +..-+.....+|.+.+++++. . + + ....+.-+.
T Consensus 184 ~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~ 263 (893)
T KOG0291|consen 184 ALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQ 263 (893)
T ss_pred eccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecc
Confidence 1122 24777653 444555555678888888761 0 0 0 001111122
Q ss_pred --ceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeC-CCcEE
Q 004094 216 --YEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALG-DGHLL 292 (774)
Q Consensus 216 --~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~-~G~l~ 292 (774)
..++|.++.+ ..+.+++|+. +|...+|.+|++++++...++. .....+.+.. ...+|-+|.+ -|+|+
T Consensus 264 ~~~kvtaa~fH~------~t~~lvvgFs-sG~f~LyelP~f~lih~LSis~-~~I~t~~~N~--tGDWiA~g~~klgQLl 333 (893)
T KOG0291|consen 264 NSSKVTAAAFHK------GTNLLVVGFS-SGEFGLYELPDFNLIHSLSISD-QKILTVSFNS--TGDWIAFGCSKLGQLL 333 (893)
T ss_pred cccceeeeeccC------CceEEEEEec-CCeeEEEecCCceEEEEeeccc-ceeeEEEecc--cCCEEEEcCCccceEE
Confidence 4566666632 3677888888 9999999999999988766652 1223333332 2467777655 59999
Q ss_pred EEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEec--CCCeEEEecCCcEEEeeecccCceeeecccCCCCCCc
Q 004094 293 NFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS--DRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDS 370 (774)
Q Consensus 293 ~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~--~~p~~l~~~~~~~~~~~~~~~~i~~~~~f~~~~~~~~ 370 (774)
+|++...+--++.+ |-.+ ++..+......-++++| |...-++.....+.+.... ++-.+++.+.-....+.
T Consensus 334 VweWqsEsYVlKQQ-----gH~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-eHts~Vt~v~f~~~g~~ 406 (893)
T KOG0291|consen 334 VWEWQSESYVLKQQ-----GHSD-RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-EHTSGVTAVQFTARGNV 406 (893)
T ss_pred EEEeeccceeeecc-----cccc-ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-cCCCceEEEEEEecCCE
Confidence 99998654322211 1111 22222222233355554 2223333333334333222 11122222211112223
Q ss_pred EEEEe-CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC
Q 004094 371 LAIAK-EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 449 (774)
Q Consensus 371 l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~ 449 (774)
++.++ ++.++...+...+.+-.-..|-.-....++.+|....++.+.- ..+.|.+.+.+|++.++. +.
T Consensus 407 llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~---------d~F~IfvWS~qTGqllDi--Ls 475 (893)
T KOG0291|consen 407 LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQ---------DSFEIFVWSVQTGQLLDI--LS 475 (893)
T ss_pred EEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeecc---------ceEEEEEEEeecCeeeeh--hc
Confidence 33333 6777777776655544444444444455666665554333332 357899999999998874 44
Q ss_pred CCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC--eEEEEEEEeecCceeEeccc--cCeEEE-E
Q 004094 450 TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG--KLQLIAEKETKGAVYSLNAF--NGKLLA-A 524 (774)
Q Consensus 450 ~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~--kl~~~~~~~~~g~v~~i~~~--~~~lv~-~ 524 (774)
-+|-+.+-.. |+.. ...++-|. .. -.+.+|++-.. ..+. .++..-|+++..- +..|.+ .
T Consensus 476 GHEgPVs~l~--f~~~-~~~LaS~S-WD---------kTVRiW~if~s~~~vEt---l~i~sdvl~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 476 GHEGPVSGLS--FSPD-GSLLASGS-WD---------KTVRIWDIFSSSGTVET---LEIRSDVLAVSFRPDGKELAVAT 539 (893)
T ss_pred CCCCcceeeE--Eccc-cCeEEecc-cc---------ceEEEEEeeccCceeee---EeeccceeEEEEcCCCCeEEEEE
Confidence 5666544322 3322 23444332 21 25667777532 3332 3445566666643 334644 4
Q ss_pred ECCEEEEEEeeecC-----CCchhhhhh--------ccc--cc-ceEEEEEEEeCCEEEEEeccccEEEEEE
Q 004094 525 INQKIQLYKWMLRD-----DGTRELQSE--------CGH--HG-HILALYVQTRGDFIVVGDLMKSISLLIY 580 (774)
Q Consensus 525 ~g~~l~v~~~~~~~-----~~~~~l~~~--------~~~--~~-~~~~~~l~~~~~~I~vgD~~~Sv~~~~~ 580 (774)
...+|.+|+..+.- +|.+.+.+. +.. .+ .+..++.+..|+.|+.|-.-+++.+|..
T Consensus 540 ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 540 LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred ecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 45678887643100 122222211 110 11 1234566678999999999999988654
No 20
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.01 E-value=0.035 Score=59.44 Aligned_cols=348 Identities=14% Similarity=0.176 Sum_probs=197.6
Q ss_pred ceeeeecC-CC-eEEEEe-cCcEEEEecCCCceeeeEeCCCC--CcEEEEEECCC-EEEEEEcCCeEEEEEEcCceEEEE
Q 004094 136 TLFCHDAI-YN-QLVQVT-SGSVRLVSSTSRELRNEWKSPPG--YSVNVATANAS-QVLLATGGGHLVYLEIGDGILTEV 209 (774)
Q Consensus 136 Tl~~~~~~-~~-~~vQVT-~~~i~l~~~~~~~~~~~~~~~~~--~~I~~a~~~~~-~lvv~~~~~~~~~~~~~~~~l~~~ 209 (774)
-||+-... ++ .++-+. .+++++.+..+...+..|..+.. ..-+.+-...+ .+.|++ +|.+-||+.++.....
T Consensus 237 sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl-~G~in~ln~~d~~~~~- 314 (603)
T KOG0318|consen 237 SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSL-SGTINYLNPSDPSVLK- 314 (603)
T ss_pred cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEc-CcEEEEecccCCChhh-
Confidence 46665543 43 666665 46788888877778888865432 11122333334 444444 7888888776533111
Q ss_pred EeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeee---ecCeeEEEEEe
Q 004094 210 KHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCA---FEGISYLLCAL 286 (774)
Q Consensus 210 ~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~---~~~~~~L~vgl 286 (774)
...-..+.|+|+++.+ ...++.-|.+ ||.|.=|....... ..+.. .++.-.+.. -+...+.-+|.
T Consensus 315 ~i~GHnK~ITaLtv~~------d~~~i~Sgsy-DG~I~~W~~~~g~~---~~~~g--~~h~nqI~~~~~~~~~~~~t~g~ 382 (603)
T KOG0318|consen 315 VISGHNKSITALTVSP------DGKTIYSGSY-DGHINSWDSGSGTS---DRLAG--KGHTNQIKGMAASESGELFTIGW 382 (603)
T ss_pred eecccccceeEEEEcC------CCCEEEeecc-CceEEEEecCCccc---ccccc--ccccceEEEEeecCCCcEEEEec
Confidence 1234457799999864 2477888888 99999998765321 11110 111111111 11123333444
Q ss_pred CCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCeEEEecCCcEEEeeeccc-CceeeecccCC
Q 004094 287 GDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLK-EVSHMCPFNSA 365 (774)
Q Consensus 287 ~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~~~~~~~~~~~~~-~i~~~~~f~~~ 365 (774)
. ..|-+..+.. +.........+|.+|..+.... ++..+++.+..-..++.+.+++.-.|+.+. +..+++|-
T Consensus 383 D-d~l~~~~~~~--~~~t~~~~~~lg~QP~~lav~~--d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~--- 454 (603)
T KOG0318|consen 383 D-DTLRVISLKD--NGYTKSEVVKLGSQPKGLAVLS--DGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD--- 454 (603)
T ss_pred C-CeEEEEeccc--CcccccceeecCCCceeEEEcC--CCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC---
Confidence 3 3454444322 1122333468999998776533 445677777777777776665544444332 22222221
Q ss_pred CCCCcEEEE--eCCeEEEEEEcCCC-CeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceE
Q 004094 366 AFPDSLAIA--KEGELTIGTIDDIQ-KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEF 442 (774)
Q Consensus 366 ~~~~~l~~~--~~~~l~i~~l~~~~-~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~ 442 (774)
...+.+ .++.+++.+|.... .-..+.++..+.+.-|+|+|+...++++-..+ .+-++|..+.+.
T Consensus 455 ---~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~r----------kvv~yd~~s~~~ 521 (603)
T KOG0318|consen 455 ---GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASR----------KVVLYDVASREV 521 (603)
T ss_pred ---CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCC----------cEEEEEcccCce
Confidence 123333 46789999998754 33457788888999999999977655543322 566777766555
Q ss_pred EE-EEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC-eEEEEEEEeecCceeEeccccCe
Q 004094 443 IS-TYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG-KLQLIAEKETKGAVYSLNAFNGK 520 (774)
Q Consensus 443 i~-~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~-kl~~~~~~~~~g~v~~i~~~~~~ 520 (774)
.. ..-| ..-++.|+. |.- ...+++-|. .. -.+++|++++- +- +..+..+.+.|+++.=.+..
T Consensus 522 ~~~~w~F-HtakI~~~a-WsP---~n~~vATGS--lD--------t~Viiysv~kP~~~-i~iknAH~~gVn~v~wlde~ 585 (603)
T KOG0318|consen 522 KTNRWAF-HTAKINCVA-WSP---NNKLVATGS--LD--------TNVIIYSVKKPAKH-IIIKNAHLGGVNSVAWLDES 585 (603)
T ss_pred ecceeee-eeeeEEEEE-eCC---CceEEEecc--cc--------ceEEEEEccChhhh-eEeccccccCceeEEEecCc
Confidence 21 1222 223456654 432 244555443 22 37899999852 22 44444567779999988888
Q ss_pred EEEEECCEEEEEEe
Q 004094 521 LLAAINQKIQLYKW 534 (774)
Q Consensus 521 lv~~~g~~l~v~~~ 534 (774)
=+++.|+.--+..|
T Consensus 586 tvvSsG~Da~iK~W 599 (603)
T KOG0318|consen 586 TVVSSGQDANIKVW 599 (603)
T ss_pred eEEeccCcceeEEe
Confidence 77777764433334
No 21
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.00 E-value=0.0059 Score=65.09 Aligned_cols=193 Identities=14% Similarity=0.112 Sum_probs=119.8
Q ss_pred CCEEEEEEeccCCCCCceeeeEEEEEECCC-------ceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCC
Q 004094 410 SRTFAICSLKNQSCAEESEMHFVRLLDDQT-------FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEEN 482 (774)
Q Consensus 410 ~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~-------~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~ 482 (774)
...++|++....+.+.+...+++.+++-.. ++.+...++ ...+++++.+ +.++++|.+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~--~g~V~ai~~~------~~~lv~~~g------- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV--KGPVTAICSF------NGRLVVAVG------- 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE--SS-EEEEEEE------TTEEEEEET-------
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee--cCcceEhhhh------CCEEEEeec-------
Confidence 455666666543222222337888887654 234455555 4557888765 234777763
Q ss_pred CCcceEEEEEEEeCCe-EEEEEEEeecCceeEeccccCeEEEEEC-CEEEEEEeeecCCCchhhhhhcccccceEEEEEE
Q 004094 483 EPTKGRILVFIVEDGK-LQLIAEKETKGAVYSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQ 560 (774)
Q Consensus 483 ~~~~Grl~v~~i~~~k-l~~~~~~~~~g~v~~i~~~~~~lv~~~g-~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 560 (774)
++|++|++.+.+ +...+..+.+-.++++..++++|+++-- +.+.+++|+.. ..+|...+.-.....++++.
T Consensus 107 ----~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~---~~~l~~va~d~~~~~v~~~~ 179 (321)
T PF03178_consen 107 ----NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEE---NNKLILVARDYQPRWVTAAE 179 (321)
T ss_dssp ----TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETT---TE-EEEEEEESS-BEEEEEE
T ss_pred ----CEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEcc---CCEEEEEEecCCCccEEEEE
Confidence 599999999887 9999988888899999999999888754 78899988642 23344443222223344444
Q ss_pred E--eCCEEEEEeccccEEEEEEEcc------CC-eEEEEeccCCcceeEEE---EEee----CC-----eEEEEccCCcE
Q 004094 561 T--RGDFIVVGDLMKSISLLIYKHE------EG-AIEERARDYNANWMSAV---EILD----DD-----IYLGAENNFNL 619 (774)
Q Consensus 561 ~--~~~~I~vgD~~~Sv~~~~~~~~------~~-~l~~~a~D~~~~~v~~~---~~l~----~~-----~~l~~D~~gnl 619 (774)
. .++.++++|....+.+++++++ .. +|...+.=.....+++. .+.. .+ .++.+-.+|.|
T Consensus 180 ~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~I 259 (321)
T PF03178_consen 180 FLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSI 259 (321)
T ss_dssp EE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-E
T ss_pred EecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEE
Confidence 3 3569999999999999999863 23 67777655445555554 2222 11 26777789999
Q ss_pred EEEee
Q 004094 620 FTVRK 624 (774)
Q Consensus 620 ~~l~~ 624 (774)
..+..
T Consensus 260 g~l~p 264 (321)
T PF03178_consen 260 GVLIP 264 (321)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 86654
No 22
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.95 E-value=0.016 Score=59.28 Aligned_cols=218 Identities=19% Similarity=0.193 Sum_probs=122.4
Q ss_pred EEEEe-CCeEEEEEEcCCCCeEEEEEeCCC-cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEEC
Q 004094 371 LAIAK-EGELTIGTIDDIQKLHIRSIPLGE-HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPL 448 (774)
Q Consensus 371 l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~-tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~ 448 (774)
++... ++.+.+..++... ..+.+.... ....+.+.+..+.+++++.+ ..++++|..+.+.+..+..
T Consensus 24 l~~~~~~g~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----------~~i~i~~~~~~~~~~~~~~ 91 (289)
T cd00200 24 LATGSGDGTIKVWDLETGE--LLRTLKGHTGPVRDVAASADGTYLASGSSD----------KTIRLWDLETGECVRTLTG 91 (289)
T ss_pred EEEeecCcEEEEEEeeCCC--cEEEEecCCcceeEEEECCCCCEEEEEcCC----------CeEEEEEcCcccceEEEec
Confidence 44443 6778888877543 222333222 33478888887776666543 3788888877655555442
Q ss_pred CCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEecccc-Ce-EEEEE-
Q 004094 449 DTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFN-GK-LLAAI- 525 (774)
Q Consensus 449 ~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~-~~-lv~~~- 525 (774)
....+.++. +..+ ..++++|. ..|.+.+|++...+...... ...+++++++... +. ++++.
T Consensus 92 -~~~~i~~~~---~~~~-~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~ 155 (289)
T cd00200 92 -HTSYVSSVA---FSPD-GRILSSSS----------RDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQ 155 (289)
T ss_pred -cCCcEEEEE---EcCC-CCEEEEec----------CCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcC
Confidence 223455554 2322 45565554 24899999987554433222 4567888888664 44 44444
Q ss_pred CCEEEEEEeeecCCCchhhhhh-cccccceEEEEEEE--eCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEE
Q 004094 526 NQKIQLYKWMLRDDGTRELQSE-CGHHGHILALYVQT--RGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAV 602 (774)
Q Consensus 526 g~~l~v~~~~~~~~~~~~l~~~-~~~~~~~~~~~l~~--~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~ 602 (774)
++.+++|+... + +.... ..... .+.++.. .++.++++.....+.++ +....+....-. .....+.++
T Consensus 156 ~~~i~i~d~~~---~--~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~~~~i~i~--d~~~~~~~~~~~-~~~~~i~~~ 225 (289)
T cd00200 156 DGTIKLWDLRT---G--KCVATLTGHTG--EVNSVAFSPDGEKLLSSSSDGTIKLW--DLSTGKCLGTLR-GHENGVNSV 225 (289)
T ss_pred CCcEEEEEccc---c--ccceeEecCcc--ccceEEECCCcCEEEEecCCCcEEEE--ECCCCceecchh-hcCCceEEE
Confidence 67888887531 1 11111 11111 2333444 44488888886666664 433322221111 223366667
Q ss_pred EEeeCCeE-EEEccCCcEEEEeeCC
Q 004094 603 EILDDDIY-LGAENNFNLFTVRKNS 626 (774)
Q Consensus 603 ~~l~~~~~-l~~D~~gnl~~l~~~~ 626 (774)
.+..++.+ ++++.+|.+.++....
T Consensus 226 ~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 226 AFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred EEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 66655554 4566699999998753
No 23
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.93 E-value=0.07 Score=60.33 Aligned_cols=223 Identities=15% Similarity=0.191 Sum_probs=114.8
Q ss_pred cceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecC
Q 004094 233 SQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLG 312 (774)
Q Consensus 233 ~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG 312 (774)
+.+.+..+- +.+..+|+...+.+++.. ...|..+..+.- .+.+.+++.++ .+..|.-.. ++.. ....+
T Consensus 46 ~~~~vtt~v-gksfqvYd~~kl~ll~vs----~~lp~~I~alas-~~~~vy~A~g~-~i~~~~rgk---~i~~--~~~~~ 113 (910)
T KOG1539|consen 46 STFYVTTCV-GKSFQVYDVNKLNLLFVS----KPLPDKITALAS-DKDYVYVASGN-KIYAYARGK---HIRH--TTLLH 113 (910)
T ss_pred ceEEEEEec-CceEEEEeccceEEEEec----CCCCCceEEEEe-cCceEEEecCc-EEEEEEccc---eEEE--Eeccc
Confidence 344444444 889999999998887643 125566643321 35778888765 344454221 0000 01111
Q ss_pred CCCe-EEEEEEeCCcceEEEec-CCCeEEEecCC-----cE--EEeeecccCceeeecccCCCCCC-cEEEEeCCeEEEE
Q 004094 313 TQPI-TLRTFSSKNTTHVFAAS-DRPTVIYSSNK-----KL--LYSNVNLKEVSHMCPFNSAAFPD-SLAIAKEGELTIG 382 (774)
Q Consensus 313 ~~pv-~l~~~~~~~~~~v~~~~-~~p~~l~~~~~-----~~--~~~~~~~~~i~~~~~f~~~~~~~-~l~~~~~~~l~i~ 382 (774)
..-| .|.+|. . .++++- ++-..++.... .+ .+.+...+.|.+++.- ..+-+ -++..+++.|++.
T Consensus 114 ~a~v~~l~~fG---e-~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP--~TYLNKIvvGs~~G~lql~ 187 (910)
T KOG1539|consen 114 GAKVHLLLPFG---E-HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHP--STYLNKIVVGSSQGRLQLW 187 (910)
T ss_pred cceEEEEeeec---c-eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecc--hhheeeEEEeecCCcEEEE
Confidence 1112 223331 1 222222 22222222111 11 2233333334443322 22223 3455789999999
Q ss_pred EEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEE
Q 004094 383 TIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSF 462 (774)
Q Consensus 383 ~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~ 462 (774)
++.+.+.++.-+ ......+.+.-.|.....+|.+.. +.|-+++-+..+.+-+|+-+ .-.|++ +.|
T Consensus 188 Nvrt~K~v~~f~-~~~s~IT~ieqsPaLDVVaiG~~~----------G~ViifNlK~dkil~sFk~d-~g~Vts---lSF 252 (910)
T KOG1539|consen 188 NVRTGKVVYTFQ-EFFSRITAIEQSPALDVVAIGLEN----------GTVIIFNLKFDKILMSFKQD-WGRVTS---LSF 252 (910)
T ss_pred EeccCcEEEEec-ccccceeEeccCCcceEEEEeccC----------ceEEEEEcccCcEEEEEEcc-ccceeE---EEe
Confidence 998765332221 111334445556777777777643 47888888877887776654 344444 346
Q ss_pred cCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe
Q 004094 463 SDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK 498 (774)
Q Consensus 463 ~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~k 498 (774)
..++.+.+++|+.+ |.+.+|++++++
T Consensus 253 rtDG~p~las~~~~----------G~m~~wDLe~kk 278 (910)
T KOG1539|consen 253 RTDGNPLLASGRSN----------GDMAFWDLEKKK 278 (910)
T ss_pred ccCCCeeEEeccCC----------ceEEEEEcCCCe
Confidence 66777888877642 555555555433
No 24
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.76 E-value=0.092 Score=56.52 Aligned_cols=241 Identities=17% Similarity=0.262 Sum_probs=137.9
Q ss_pred CCCEEEEEEc----CCeEEEEEEcC--ceEEEEEecc-CCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCC-C
Q 004094 183 NASQVLLATG----GGHLVYLEIGD--GILTEVKHAQ-LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD-L 254 (774)
Q Consensus 183 ~~~~lvv~~~----~~~~~~~~~~~--~~l~~~~~~~-l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~-~ 254 (774)
++..+.++.. .+.+..|.+++ ++|..+.+.. ....+..+++.+ ...+++++.+.+|++.+|.+.+ .
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~------~g~~l~vany~~g~v~v~~l~~~g 120 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP------DGRFLYVANYGGGSVSVFPLDDDG 120 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT------TSSEEEEEETTTTEEEEEEECTTS
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec------CCCEEEEEEccCCeEEEEEccCCc
Confidence 3445555543 35787888876 6888876655 456666777754 2678888888899999999975 2
Q ss_pred CeeEE---ecC---------CCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccce--eeecCCCCeEEEE
Q 004094 255 NLITK---EHL---------GGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRK--KVSLGTQPITLRT 320 (774)
Q Consensus 255 ~~~~~---~~l---------~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~--~~~lG~~pv~l~~ 320 (774)
.+... ... .....|+.+.+.+- ++..+...++...+..|.++...+.|.... ....|.-|..+.
T Consensus 121 ~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd-g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~- 198 (345)
T PF10282_consen 121 SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD-GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA- 198 (345)
T ss_dssp EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT-SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE-
T ss_pred ccceeeeecccCCCCCcccccccccceeEEECCC-CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEE-
Confidence 22111 100 11234666655432 234445588999999999998766665433 335688887664
Q ss_pred EEeCCcceEEEecCCCeEE--E-ec--CCcEEEe---eecccCc---eeeecccCCCCCC-cEEEEe---CCeEEEEEEc
Q 004094 321 FSSKNTTHVFAASDRPTVI--Y-SS--NKKLLYS---NVNLKEV---SHMCPFNSAAFPD-SLAIAK---EGELTIGTID 385 (774)
Q Consensus 321 ~~~~~~~~v~~~~~~p~~l--~-~~--~~~~~~~---~~~~~~i---~~~~~f~~~~~~~-~l~~~~---~~~l~i~~l~ 385 (774)
|.. +...+++.++...-+ + .. .+.+... +...... ...+.+. ..|+ .++|++ .+.+.+..++
T Consensus 199 f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~--ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 199 FSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA--ISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp E-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE--E-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE--EecCCCEEEEEeccCCEEEEEEEe
Confidence 322 345677776544322 2 22 3333221 1110000 0111111 1133 355554 5889999996
Q ss_pred CC-CCe-EEEEEeC-CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEE--ECCCceEE
Q 004094 386 DI-QKL-HIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLL--DDQTFEFI 443 (774)
Q Consensus 386 ~~-~~~-~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~--d~~~~~~i 443 (774)
.. ..+ .+..++. |..||.++.+|+.+.++|++... ..|.++ |+.+....
T Consensus 276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s---------~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 276 PATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS---------NTVSVFDIDPDTGKLT 329 (345)
T ss_dssp TTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT---------TEEEEEEEETTTTEEE
T ss_pred cCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC---------CeEEEEEEeCCCCcEE
Confidence 54 333 5667787 56699999999998888876442 134443 66776544
No 25
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.72 E-value=0.11 Score=56.08 Aligned_cols=284 Identities=20% Similarity=0.242 Sum_probs=160.6
Q ss_pred EEEEEeCC----CcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCC----CeEE-Ee--cC-CcEEE
Q 004094 281 YLLCALGD----GHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDR----PTVI-YS--SN-KKLLY 348 (774)
Q Consensus 281 ~L~vgl~~----G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~----p~~l-~~--~~-~~~~~ 348 (774)
.++||+.+ +-+..|++|..++.|........+..|-.|.. ......+++..+. ..+. |. .+ +.+..
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~--~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~ 78 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAV--SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL 78 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE---TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEE--EeCCCEEEEEEccccCCCCEEEEEECCCcceeEE
Confidence 36888887 78999999988888876655556667755542 2245677777663 2332 22 22 44433
Q ss_pred eeecccCceeeecccCCCCCC-cEEE-Ee--CCeEEEEEEcCCCCeEEE--EE-----------eCCCcccEEEEecCCC
Q 004094 349 SNVNLKEVSHMCPFNSAAFPD-SLAI-AK--EGELTIGTIDDIQKLHIR--SI-----------PLGEHPRRICHQEQSR 411 (774)
Q Consensus 349 ~~~~~~~i~~~~~f~~~~~~~-~l~~-~~--~~~l~i~~l~~~~~~~~~--~i-----------~l~~tp~~i~y~~~~~ 411 (774)
..-. ....-.|-+-...++ .+++ +. ++.+.+..++....+... .+ .-+..|+.+.++|+.+
T Consensus 79 ~~~~--~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 79 LNSV--PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp EEEE--EESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred eeee--ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 2110 000111111111122 3444 43 789999999876433221 22 1235688999999988
Q ss_pred EEEEEEeccCCCCCceeeeEEEEEEC--CC--ceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcce
Q 004094 412 TFAICSLKNQSCAEESEMHFVRLLDD--QT--FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKG 487 (774)
Q Consensus 412 ~~~v~~~~~~~~~~~~~~~~l~l~d~--~~--~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~G 487 (774)
.++|..... -.|.+++. .+ .+....+.++++.-+-.+. |..+++.++++.- ..+
T Consensus 157 ~v~v~dlG~---------D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~---f~pdg~~~Yv~~e----------~s~ 214 (345)
T PF10282_consen 157 FVYVPDLGA---------DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA---FSPDGKYAYVVNE----------LSN 214 (345)
T ss_dssp EEEEEETTT---------TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE---E-TTSSEEEEEET----------TTT
T ss_pred EEEEEecCC---------CEEEEEEEeCCCceEEEeeccccccCCCCcEEE---EcCCcCEEEEecC----------CCC
Confidence 777665432 14555544 33 3334566777777766554 4444444445432 457
Q ss_pred EEEEEEEe--CCeEEEEEEEeec-----C--ceeEeccc-cC-eEEEEEC--CEEEEEEeeecCCCchhhhhhccccc--
Q 004094 488 RILVFIVE--DGKLQLIAEKETK-----G--AVYSLNAF-NG-KLLAAIN--QKIQLYKWMLRDDGTRELQSECGHHG-- 552 (774)
Q Consensus 488 rl~v~~i~--~~kl~~~~~~~~~-----g--~v~~i~~~-~~-~lv~~~g--~~l~v~~~~~~~~~~~~l~~~~~~~~-- 552 (774)
.|.+|++. +++++.+.....- + ...+|.-- +| +|+++.. +.|.+|+++.. .|. |.......+
T Consensus 215 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-~g~--l~~~~~~~~~G 291 (345)
T PF10282_consen 215 TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA-TGT--LTLVQTVPTGG 291 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-TTT--EEEEEEEEESS
T ss_pred cEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC-CCc--eEEEEEEeCCC
Confidence 99999999 6677776655431 1 23344433 34 4666553 58999998532 233 332222221
Q ss_pred c-eEEEEEEEeCCEEEEEecc-ccEEEEEEEccCCeEEEEecc
Q 004094 553 H-ILALYVQTRGDFIVVGDLM-KSISLLIYKHEEGAIEERARD 593 (774)
Q Consensus 553 ~-~~~~~l~~~~~~I~vgD~~-~Sv~~~~~~~~~~~l~~~a~D 593 (774)
. +..+.++-.|++++|+... +.|.+++.+.+.+.|..+++.
T Consensus 292 ~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~ 334 (345)
T PF10282_consen 292 KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSS 334 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEeccc
Confidence 1 2233444578899998855 468888888888899888754
No 26
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.57 E-value=0.038 Score=58.27 Aligned_cols=199 Identities=17% Similarity=0.125 Sum_probs=117.6
Q ss_pred ceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCeEEEecC--Cc
Q 004094 268 PRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSN--KK 345 (774)
Q Consensus 268 p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~~--~~ 345 (774)
..|+.+.+ ..+.|+++--||.|-.|.+|-.... ...+..+-..|+.=..|..+|.+.||..|.++++...+= .+
T Consensus 216 I~sv~FHp--~~plllvaG~d~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 216 ITSVQFHP--TAPLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred ceEEEecC--CCceEEEecCCCcEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 34554443 4577888888999999999864332 122345556665444444456668888888888765541 22
Q ss_pred E-EEeeecccCceeeecccCCCCCCcEEEEeCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCC
Q 004094 346 L-LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCA 424 (774)
Q Consensus 346 ~-~~~~~~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~ 424 (774)
+ .+.|+....=.++-.|....+.+ ++.+.++.=.|.-|....+-.+-++.+.+.++-++++.+++.+++++..
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~----- 365 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT----- 365 (514)
T ss_pred cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC-----
Confidence 2 33344332212333342222222 5555443334444444445567778888999999999888777666543
Q ss_pred CceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe
Q 004094 425 EESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE 495 (774)
Q Consensus 425 ~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~ 495 (774)
+.|-++|-.+..++.++.=+-.=..+++|. . .+..|+++|+ .+|-+-+|+..
T Consensus 366 -----GeV~v~nl~~~~~~~rf~D~G~v~gts~~~---S-~ng~ylA~GS----------~~GiVNIYd~~ 417 (514)
T KOG2055|consen 366 -----GEVYVWNLRQNSCLHRFVDDGSVHGTSLCI---S-LNGSYLATGS----------DSGIVNIYDGN 417 (514)
T ss_pred -----ceEEEEecCCcceEEEEeecCccceeeeee---c-CCCceEEecc----------CcceEEEeccc
Confidence 356667776666666555444444455543 1 2356999998 35777777754
No 27
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.56 E-value=0.17 Score=54.12 Aligned_cols=269 Identities=16% Similarity=0.156 Sum_probs=141.3
Q ss_pred CCeEEEEEEcC-ceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCC-CCeeEEecCCCccCcee
Q 004094 193 GGHLVYLEIGD-GILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD-LNLITKEHLGGEIIPRS 270 (774)
Q Consensus 193 ~~~~~~~~~~~-~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~-~~~~~~~~l~~~~~p~s 270 (774)
++.+..+.++. +++..+...+....++.+++++ ..++++++.+.++.+.+|++.+ .++......+....|..
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~sp------d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISP------DKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCCCCccEEECC------CCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 56666777753 5666555555556677888865 2567888888889999999863 23211112221124555
Q ss_pred EEeeeecCeeEEEE-EeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCeEE-EecCCcEEE
Q 004094 271 VLLCAFEGISYLLC-ALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI-YSSNKKLLY 348 (774)
Q Consensus 271 i~~~~~~~~~~L~v-gl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l-~~~~~~~~~ 348 (774)
+.+.+ +..+|++ ...+|.+.+|.++.. +.+.. ++.. +. + ...|.-+ +..+++
T Consensus 85 i~~~~--~g~~l~v~~~~~~~v~v~~~~~~-g~~~~---------~~~~--~~--~-------~~~~~~~~~~p~g~--- 138 (330)
T PRK11028 85 ISTDH--QGRFLFSASYNANCVSVSPLDKD-GIPVA---------PIQI--IE--G-------LEGCHSANIDPDNR--- 138 (330)
T ss_pred EEECC--CCCEEEEEEcCCCeEEEEEECCC-CCCCC---------ceee--cc--C-------CCcccEeEeCCCCC---
Confidence 55443 3345555 445888998888642 22110 0000 00 0 0011110 011111
Q ss_pred eeecccCceeeecccCCCCCCcEEEE--eCCeEEEEEEcCCCCe-----EEEEEeCCCcccEEEEecCCCEEEEEEeccC
Q 004094 349 SNVNLKEVSHMCPFNSAAFPDSLAIA--KEGELTIGTIDDIQKL-----HIRSIPLGEHPRRICHQEQSRTFAICSLKNQ 421 (774)
Q Consensus 349 ~~~~~~~i~~~~~f~~~~~~~~l~~~--~~~~l~i~~l~~~~~~-----~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~ 421 (774)
.++.+ ..+.+.+..+++...+ ...+++.+..|+.++++|+.+.+.|+...
T Consensus 139 ---------------------~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-- 195 (330)
T PRK11028 139 ---------------------TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-- 195 (330)
T ss_pred ---------------------EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC--
Confidence 11111 1355666666543222 22345678899999999998877776532
Q ss_pred CCCCceeeeEEEEEECC----CceEEEEEEC-CC---CceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEE
Q 004094 422 SCAEESEMHFVRLLDDQ----TFEFISTYPL-DT---FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFI 493 (774)
Q Consensus 422 ~~~~~~~~~~l~l~d~~----~~~~i~~~~~-~~---~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~ 493 (774)
...|.+++-. +++.+.++.. ++ ++. .. ..+.+..+ .+++.|+.. ..+.|.+|+
T Consensus 196 -------~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~-~~i~~~pd-g~~lyv~~~---------~~~~I~v~~ 256 (330)
T PRK11028 196 -------NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTR-WA-ADIHITPD-GRHLYACDR---------TASLISVFS 256 (330)
T ss_pred -------CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCc-cc-eeEEECCC-CCEEEEecC---------CCCeEEEEE
Confidence 2356665542 3344444432 11 111 11 12334433 456666521 246899999
Q ss_pred EeC--CeEEEEEEEeecCceeEeccc-cC-eEEEEE--CCEEEEEEee
Q 004094 494 VED--GKLQLIAEKETKGAVYSLNAF-NG-KLLAAI--NQKIQLYKWM 535 (774)
Q Consensus 494 i~~--~kl~~~~~~~~~g~v~~i~~~-~~-~lv~~~--g~~l~v~~~~ 535 (774)
+.. .+++++........+..+.-- +| +|+++. .++|.+|+++
T Consensus 257 i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 257 VSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 973 466766665543344444432 34 566554 3589998875
No 28
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.55 E-value=0.052 Score=57.65 Aligned_cols=272 Identities=13% Similarity=0.112 Sum_probs=157.5
Q ss_pred CceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEE-ecCCCccCceeEEeeeecCeeEEEEEeCCCcEEE
Q 004094 215 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITK-EHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLN 293 (774)
Q Consensus 215 ~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~-~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~ 293 (774)
...|++++|+|.+ ...++|.+ +-.+.||+....+..-+ ..+. -...|+.+- .+...|.+|-..|.+-+
T Consensus 26 ~~~vssl~fsp~~-----P~d~aVt~--S~rvqly~~~~~~~~k~~srFk--~~v~s~~fR--~DG~LlaaGD~sG~V~v 94 (487)
T KOG0310|consen 26 HNSVSSLCFSPKH-----PYDFAVTS--SVRVQLYSSVTRSVRKTFSRFK--DVVYSVDFR--SDGRLLAAGDESGHVKV 94 (487)
T ss_pred cCcceeEecCCCC-----CCceEEec--ccEEEEEecchhhhhhhHHhhc--cceeEEEee--cCCeEEEccCCcCcEEE
Confidence 3567888997643 33445533 45788998766444221 1111 122343332 24566788999999999
Q ss_pred EEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecC-CCeEEEec-CCcEEEeeecc--cCceeeecccCCCCCC
Q 004094 294 FLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASD-RPTVIYSS-NKKLLYSNVNL--KEVSHMCPFNSAAFPD 369 (774)
Q Consensus 294 y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~-~p~~l~~~-~~~~~~~~~~~--~~i~~~~~f~~~~~~~ 369 (774)
|.+.+. .-.|.......|++...|... .+-+|+.|+ ....-|++ .+......+.. +-+.+.+-.+ ..+
T Consensus 95 fD~k~r----~iLR~~~ah~apv~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~---~~~ 166 (487)
T KOG0310|consen 95 FDMKSR----VILRQLYAHQAPVHVTKFSPQ-DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISP---AND 166 (487)
T ss_pred eccccH----HHHHHHhhccCceeEEEeccc-CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecccc---CCC
Confidence 874331 011223445678888877533 345666554 33333443 22221112221 2233322111 112
Q ss_pred cEEEEe--CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEE
Q 004094 370 SLAIAK--EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP 447 (774)
Q Consensus 370 ~l~~~~--~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~ 447 (774)
.+++.- ++.+++...-... -.+..+.=|..+..++|.|....++-+.. ..++++|-.++..+-.-.
T Consensus 167 hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgG-----------n~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 167 HIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGG-----------NSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred eEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCC-----------CeEEEEEecCCceehhhh
Confidence 344433 4666666654433 34666677788899999998776665542 379999886443333333
Q ss_pred CCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEecccc--CeEEEEE
Q 004094 448 LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFN--GKLLAAI 525 (774)
Q Consensus 448 ~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~--~~lv~~~ 525 (774)
+..+..++|+... .++...+-.|- -|++.+|++. ..+++|...++|||.++.-.. ..++++.
T Consensus 235 ~~H~KtVTcL~l~---s~~~rLlS~sL-----------D~~VKVfd~t--~~Kvv~s~~~~~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 235 FNHNKTVTCLRLA---SDSTRLLSGSL-----------DRHVKVFDTT--NYKVVHSWKYPGPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred hcccceEEEEEee---cCCceEeeccc-----------ccceEEEEcc--ceEEEEeeecccceeeEEecCCCceEEEec
Confidence 4477889998754 33333333332 3899999864 588899999999999999874 4588888
Q ss_pred CCEEEEEE
Q 004094 526 NQKIQLYK 533 (774)
Q Consensus 526 g~~l~v~~ 533 (774)
++-+..++
T Consensus 299 snGlv~~r 306 (487)
T KOG0310|consen 299 SNGLVSIR 306 (487)
T ss_pred ccceeeee
Confidence 88776544
No 29
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=97.47 E-value=0.044 Score=55.93 Aligned_cols=269 Identities=16% Similarity=0.189 Sum_probs=139.1
Q ss_pred CceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCc-cCceeEEeeeecCeeEEEEEeCCCcEEE
Q 004094 215 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGE-IIPRSVLLCAFEGISYLLCALGDGHLLN 293 (774)
Q Consensus 215 ~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~-~~p~si~~~~~~~~~~L~vgl~~G~l~~ 293 (774)
-..|-|+++.|. ..+++-|.- |+++.||++...++..+ +++- ...+.+++... .+|||+...|+.+-+
T Consensus 151 lgWVr~vavdP~------n~wf~tgs~-DrtikIwDlatg~Lklt--ltGhi~~vr~vavS~r--HpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 151 LGWVRSVAVDPG------NEWFATGSA-DRTIKIWDLATGQLKLT--LTGHIETVRGVAVSKR--HPYLFSAGEDKQVKC 219 (460)
T ss_pred cceEEEEeeCCC------ceeEEecCC-CceeEEEEcccCeEEEe--ecchhheeeeeeeccc--CceEEEecCCCeeEE
Confidence 367889999763 466666666 99999999987554322 2211 24566665543 589999999999999
Q ss_pred EEEecCCCccccceee--ec-CCCCeEEEEEEeCCcceEEEecCCCeEEEec--CCcEEEeeecc--cCceeeecccCCC
Q 004094 294 FLLNMKTGELTDRKKV--SL-GTQPITLRTFSSKNTTHVFAASDRPTVIYSS--NKKLLYSNVNL--KEVSHMCPFNSAA 366 (774)
Q Consensus 294 y~~~~~~~~l~~~~~~--~l-G~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~--~~~~~~~~~~~--~~i~~~~~f~~~~ 366 (774)
|.+.... ..|.. ++ |...+.++| .-.++++|.|-..+-.. +.+..++-+.. .++..+. + .+.
T Consensus 220 wDLe~nk----vIR~YhGHlS~V~~L~lhP-----Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~-~-~~~ 288 (460)
T KOG0285|consen 220 WDLEYNK----VIRHYHGHLSGVYCLDLHP-----TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM-C-QPT 288 (460)
T ss_pred Eechhhh----hHHHhccccceeEEEeccc-----cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEE-e-ecC
Confidence 9886421 11111 01 111122222 23456665555443222 23333222221 2222211 0 111
Q ss_pred CCCcEEEEeCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEE
Q 004094 367 FPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTY 446 (774)
Q Consensus 367 ~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~ 446 (774)
.|.-+-...++.+++..+-..+. ..--..-+.+++.++.||..++|+-++.++ ++-.+....+.+..+
T Consensus 289 dpqvit~S~D~tvrlWDl~agkt-~~tlt~hkksvral~lhP~e~~fASas~dn-----------ik~w~~p~g~f~~nl 356 (460)
T KOG0285|consen 289 DPQVITGSHDSTVRLWDLRAGKT-MITLTHHKKSVRALCLHPKENLFASASPDN-----------IKQWKLPEGEFLQNL 356 (460)
T ss_pred CCceEEecCCceEEEeeeccCce-eEeeecccceeeEEecCCchhhhhccCCcc-----------ceeccCCccchhhcc
Confidence 12122233466777776654321 111122234778888899888877766553 111111111111110
Q ss_pred ECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeC-CeEEEEEEEeecC------ceeEeccc--
Q 004094 447 PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVED-GKLQLIAEKETKG------AVYSLNAF-- 517 (774)
Q Consensus 447 ~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~-~kl~~~~~~~~~g------~v~~i~~~-- 517 (774)
. ..+-.++++. .....++++|. .+|.+..|+.+. .+.+.......+| .|++.|.-
T Consensus 357 s-gh~~iintl~-----~nsD~v~~~G~----------dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDkt 420 (460)
T KOG0285|consen 357 S-GHNAIINTLS-----VNSDGVLVSGG----------DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKT 420 (460)
T ss_pred c-cccceeeeee-----eccCceEEEcC----------CceEEEEEecCcCcccccccccccCCccccccceeEEeeccc
Confidence 0 1222333332 23467888886 359999999984 3555554444455 45555533
Q ss_pred cCeEEE-EECCEEEEEE
Q 004094 518 NGKLLA-AINQKIQLYK 533 (774)
Q Consensus 518 ~~~lv~-~~g~~l~v~~ 533 (774)
+-+|+. ..+++|.+|+
T Consensus 421 g~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 421 GSRLITGEADKTIKMYK 437 (460)
T ss_pred CceEEeccCCcceEEEe
Confidence 335654 4668899877
No 30
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.45 E-value=0.05 Score=62.08 Aligned_cols=233 Identities=16% Similarity=0.153 Sum_probs=130.2
Q ss_pred CCEEEEEEcCCeEEEEEEcCceEEEEEecc-CCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCe---eEE
Q 004094 184 ASQVLLATGGGHLVYLEIGDGILTEVKHAQ-LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNL---ITK 259 (774)
Q Consensus 184 ~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~-l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~---~~~ 259 (774)
+.+++++-+++.+..++.... ..+=.... ....|+|++.. +++++.|+- ++++..|.+|..+. +..
T Consensus 25 gefi~tcgsdg~ir~~~~~sd-~e~P~ti~~~g~~v~~ia~~--------s~~f~~~s~-~~tv~~y~fps~~~~~iL~R 94 (933)
T KOG1274|consen 25 GEFICTCGSDGDIRKWKTNSD-EEEPETIDISGELVSSIACY--------SNHFLTGSE-QNTVLRYKFPSGEEDTILAR 94 (933)
T ss_pred CCEEEEecCCCceEEeecCCc-ccCCchhhccCceeEEEeec--------ccceEEeec-cceEEEeeCCCCCccceeee
Confidence 446666666666666553221 11111112 34556777652 467777877 99999999997543 222
Q ss_pred ecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecC-CCCeEEEEEEeCCcceEEEecCCCeE
Q 004094 260 EHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLG-TQPITLRTFSSKNTTHVFAASDRPTV 338 (774)
Q Consensus 260 ~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG-~~pv~l~~~~~~~~~~v~~~~~~p~~ 338 (774)
..+ +.+.+++. +++.++..|..|=.+...+.++.+.. +..-| ..||.=..+. .....++.
T Consensus 95 ftl----p~r~~~v~--g~g~~iaagsdD~~vK~~~~~D~s~~-----~~lrgh~apVl~l~~~--p~~~fLAv------ 155 (933)
T KOG1274|consen 95 FTL----PIRDLAVS--GSGKMIAAGSDDTAVKLLNLDDSSQE-----KVLRGHDAPVLQLSYD--PKGNFLAV------ 155 (933)
T ss_pred eec----cceEEEEe--cCCcEEEeecCceeEEEEeccccchh-----eeecccCCceeeeeEc--CCCCEEEE------
Confidence 222 23444433 45677888888877777776654311 11111 2233211111 11111111
Q ss_pred EEecCCcEEEeeecccCceeeecccCCCCCCcEEEEeCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEe
Q 004094 339 IYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSL 418 (774)
Q Consensus 339 l~~~~~~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~ 418 (774)
...+|.+++..+..+.+...- ..++..... .+.+...+.++||.+..+++.+.
T Consensus 156 -ss~dG~v~iw~~~~~~~~~tl---------------------~~v~k~n~~-----~~s~i~~~~aW~Pk~g~la~~~~ 208 (933)
T KOG1274|consen 156 -SSCDGKVQIWDLQDGILSKTL---------------------TGVDKDNEF-----ILSRICTRLAWHPKGGTLAVPPV 208 (933)
T ss_pred -EecCceEEEEEcccchhhhhc---------------------ccCCccccc-----cccceeeeeeecCCCCeEEeecc
Confidence 112334433333211110000 000000000 01234567899999999999998
Q ss_pred ccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe
Q 004094 419 KNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE 495 (774)
Q Consensus 419 ~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~ 495 (774)
++ +|+++++.+|+....+..+..+...+...|. . ...||+-|| ..|.|.||+++
T Consensus 209 d~----------~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ws--P-nG~YiAAs~----------~~g~I~vWnv~ 262 (933)
T KOG1274|consen 209 DN----------TVKVYSRKGWELQFKLRDKLSSSKFSDLQWS--P-NGKYIAAST----------LDGQILVWNVD 262 (933)
T ss_pred CC----------eEEEEccCCceeheeecccccccceEEEEEc--C-CCcEEeeec----------cCCcEEEEecc
Confidence 86 8999999999998888777777766666653 2 368999888 45899999998
No 31
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.44 E-value=0.025 Score=56.69 Aligned_cols=206 Identities=15% Similarity=0.207 Sum_probs=106.5
Q ss_pred EEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEE-EECCCCceEEEEEEEEEcCCCceE
Q 004094 391 HIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST-YPLDTFEYGCSILSCSFSDDSNVY 469 (774)
Q Consensus 391 ~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~-~~~~~~E~~~si~~~~~~~~~~~~ 469 (774)
..++|.+...+-...|||...--+|+|.-++ ...+.-+++..-..+.. -+-..++...+. +-+.+.+|
T Consensus 99 ~l~rirf~spv~~~q~hp~k~n~~va~~~~~-------sp~vi~~s~~~h~~Lp~d~d~dln~sas~~----~fdr~g~y 167 (405)
T KOG1273|consen 99 PLKRIRFDSPVWGAQWHPRKRNKCVATIMEE-------SPVVIDFSDPKHSVLPKDDDGDLNSSASHG----VFDRRGKY 167 (405)
T ss_pred ceeEEEccCccceeeeccccCCeEEEEEecC-------CcEEEEecCCceeeccCCCccccccccccc----cccCCCCE
Confidence 5666666667777778877666666665531 12233333211122110 011112222211 22235789
Q ss_pred EEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc----cCe-EEE-EECCEEEEEEeeecC----C
Q 004094 470 YCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF----NGK-LLA-AINQKIQLYKWMLRD----D 539 (774)
Q Consensus 470 i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~----~~~-lv~-~~g~~l~v~~~~~~~----~ 539 (774)
|++|| .+|.+++|+.. .++.++...+.. +++|.++ +|. +++ +....|+.|+..+-+ +
T Consensus 168 IitGt----------sKGkllv~~a~--t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 168 IITGT----------SKGKLLVYDAE--TLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD 234 (405)
T ss_pred EEEec----------CcceEEEEecc--hheeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc
Confidence 99999 46999999864 467777666544 5666554 444 444 445667888764211 1
Q ss_pred Cc----hh---hhhhcccccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEE
Q 004094 540 GT----RE---LQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLG 612 (774)
Q Consensus 540 ~~----~~---l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~ 612 (774)
+. .| ++.+..+.. .+.+-.|.||++|. .+.-.+|.|...-+.|+.+-.-...-....+.-=--..+++
T Consensus 235 ~e~e~~~K~qDvVNk~~Wk~----ccfs~dgeYv~a~s-~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~ 309 (405)
T KOG1273|consen 235 GEVEPEHKLQDVVNKLQWKK----CCFSGDGEYVCAGS-ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIA 309 (405)
T ss_pred CCcChhHHHHHHHhhhhhhh----eeecCCccEEEecc-ccceeEEEEecCCcceeeeecCCchhheeecccccceeeee
Confidence 11 12 222323321 22234677998888 55566788887777775543222100000000000024666
Q ss_pred EccCCcEEEEeeC
Q 004094 613 AENNFNLFTVRKN 625 (774)
Q Consensus 613 ~D~~gnl~~l~~~ 625 (774)
+-..|++++....
T Consensus 310 si~sg~v~iw~~~ 322 (405)
T KOG1273|consen 310 SIASGVVYIWAVV 322 (405)
T ss_pred eccCCceEEEEee
Confidence 6678998887764
No 32
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.41 E-value=0.2 Score=51.44 Aligned_cols=312 Identities=14% Similarity=0.150 Sum_probs=151.9
Q ss_pred cEEEEEECCCEEEEEEcCCeEE--EEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCC
Q 004094 176 SVNVATANASQVLLATGGGHLV--YLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD 253 (774)
Q Consensus 176 ~I~~a~~~~~~lvv~~~~~~~~--~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~ 253 (774)
++-+++++|+.=+++..++.=+ .+++.++.+ ..........|+|++|+. .+.+++-|-- +|.+.||...+
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~-~~eltgHKDSVt~~~Fsh------dgtlLATGdm-sG~v~v~~~st 137 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF-AGELTGHKDSVTCCSFSH------DGTLLATGDM-SGKVLVFKVST 137 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCCcc-eeEecCCCCceEEEEEcc------CceEEEecCC-CccEEEEEccc
Confidence 4556677766555555444322 334444442 112234456799999964 2466666655 99999999876
Q ss_pred CCeeEEecCCCccCceeEEeeeecC-eeEEEEEeCCCcEEEEEEecCCCccccceeeecC-CCCeEEEEEEeCCcceEEE
Q 004094 254 LNLITKEHLGGEIIPRSVLLCAFEG-ISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLG-TQPITLRTFSSKNTTHVFA 331 (774)
Q Consensus 254 ~~~~~~~~l~~~~~p~si~~~~~~~-~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG-~~pv~l~~~~~~~~~~v~~ 331 (774)
-....... .....+.=+..+. ...|+.|..||.+..|++... + .. +..-| +.|+.--.|.. ++..+++
T Consensus 138 g~~~~~~~----~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~---~~-kv~~Gh~~~ct~G~f~p-dGKr~~t 207 (399)
T KOG0296|consen 138 GGEQWKLD----QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-A---LC-KVMSGHNSPCTCGEFIP-DGKRILT 207 (399)
T ss_pred CceEEEee----cccCceEEEEecccccEEEeecCCCcEEEEECCCc-c---ee-eEecCCCCCcccccccC-CCceEEE
Confidence 44332211 0122333233332 345889999999999998753 1 11 12223 23433222211 2334444
Q ss_pred ecCCCeEEEe-cCCcEEEeeeccc-----Cceeeecc---cCCCCCCc-EEEEe--CCeEEEEEEcCCCCeEEEEEeCCC
Q 004094 332 ASDRPTVIYS-SNKKLLYSNVNLK-----EVSHMCPF---NSAAFPDS-LAIAK--EGELTIGTIDDIQKLHIRSIPLGE 399 (774)
Q Consensus 332 ~~~~p~~l~~-~~~~~~~~~~~~~-----~i~~~~~f---~~~~~~~~-l~~~~--~~~l~i~~l~~~~~~~~~~i~l~~ 399 (774)
..+.-.++.+ .+..-.++.++.. +-.++..- -.....++ +.++. .+.+..+..++...+....=...+
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e 287 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE 287 (399)
T ss_pred EecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence 3333333322 2211111111100 00000000 00011122 22222 233333333322222222222233
Q ss_pred cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCC
Q 004094 400 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 479 (774)
Q Consensus 400 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~ 479 (774)
.+..+..+....+++++..+ ..|.++|-..++.-...+.+. -++.++ +. +.+|++-+++
T Consensus 288 sve~~~~ss~lpL~A~G~vd----------G~i~iyD~a~~~~R~~c~he~--~V~~l~---w~--~t~~l~t~c~---- 346 (399)
T KOG0296|consen 288 SVESIPSSSKLPLAACGSVD----------GTIAIYDLAASTLRHICEHED--GVTKLK---WL--NTDYLLTACA---- 346 (399)
T ss_pred hhhhcccccccchhhccccc----------ceEEEEecccchhheeccCCC--ceEEEE---Ec--Ccchheeecc----
Confidence 34444444455555555544 478999988776654444433 344443 22 3678887774
Q ss_pred CCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEEEEC--CEEEEEE
Q 004094 480 EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAIN--QKIQLYK 533 (774)
Q Consensus 480 ~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~~g--~~l~v~~ 533 (774)
.|.++.|+..-+.++..+ .-+.-+|+++.-- +.++++.++ ++..||+
T Consensus 347 ------~g~v~~wDaRtG~l~~~y-~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 347 ------NGKVRQWDARTGQLKFTY-TGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred ------CceEEeeeccccceEEEE-ecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 599999999877777554 3456677776654 455554443 5666665
No 33
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.38 E-value=0.02 Score=64.60 Aligned_cols=183 Identities=14% Similarity=0.128 Sum_probs=114.5
Q ss_pred cEEEEe--CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEE-EeccCCCCCceeeeEEEEEECCCceEEEEE
Q 004094 370 SLAIAK--EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAIC-SLKNQSCAEESEMHFVRLLDDQTFEFISTY 446 (774)
Q Consensus 370 ~l~~~~--~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~-~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~ 446 (774)
.|++.+ +...++..+....- .+-+.=..-++.|+|+|--.-|.+. |.+ ..+||.+-...++++=+
T Consensus 381 ~fLLSSSMDKTVRLWh~~~~~C--L~~F~HndfVTcVaFnPvDDryFiSGSLD----------~KvRiWsI~d~~Vv~W~ 448 (712)
T KOG0283|consen 381 NFLLSSSMDKTVRLWHPGRKEC--LKVFSHNDFVTCVAFNPVDDRYFISGSLD----------GKVRLWSISDKKVVDWN 448 (712)
T ss_pred CeeEeccccccEEeecCCCcce--eeEEecCCeeEEEEecccCCCcEeecccc----------cceEEeecCcCeeEeeh
Confidence 444443 67777777764332 2333334567789999977777764 433 36888887777787777
Q ss_pred ECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEE------Eee-cCceeEeccc--
Q 004094 447 PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAE------KET-KGAVYSLNAF-- 517 (774)
Q Consensus 447 ~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~------~~~-~g~v~~i~~~-- 517 (774)
+++ |.|++++. ..+ .++.+||| ..|..++|++.+.++..-.. +.. .+.||.++.+
T Consensus 449 Dl~--~lITAvcy---~Pd-Gk~avIGt----------~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~ 512 (712)
T KOG0283|consen 449 DLR--DLITAVCY---SPD-GKGAVIGT----------FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPG 512 (712)
T ss_pred hhh--hhheeEEe---ccC-CceEEEEE----------eccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCC
Confidence 776 78888764 333 78999999 44999999998877654322 122 2359998877
Q ss_pred -cCeE-EEEECCEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEeccccEEEEEEEc
Q 004094 518 -NGKL-LAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKH 582 (774)
Q Consensus 518 -~~~l-v~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~ 582 (774)
.+.+ |.+...+|+||+..+++. ..++........++. .++...|.+|+.|---+.|.+++++.
T Consensus 513 ~~~~vLVTSnDSrIRI~d~~~~~l-v~KfKG~~n~~SQ~~-Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 513 DPDEVLVTSNDSRIRIYDGRDKDL-VHKFKGFRNTSSQIS-ASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CCCeEEEecCCCceEEEeccchhh-hhhhcccccCCccee-eeEccCCCEEEEeecCceEEEEeCCC
Confidence 2344 556668999998632211 123322222222232 34556889999998666666655543
No 34
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.37 E-value=0.29 Score=52.37 Aligned_cols=337 Identities=15% Similarity=0.156 Sum_probs=172.7
Q ss_pred EEEEEecCCEEEEEECCCCCeeEEecCCCccCc-eeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCC
Q 004094 236 AAVGMWTDISVRIFSLPDLNLITKEHLGGEIIP-RSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQ 314 (774)
Q Consensus 236 ~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p-~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~ 314 (774)
+.+.+- .+-+..|.+....+.-++.+-.. .- .-+.-+.|++.-.++-|-.+|.+.+|.-.. . ...|..+.-..
T Consensus 215 liit~G-k~H~~Fw~~~~~~l~k~~~~fek-~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~--~--~~~k~~~aH~g 288 (626)
T KOG2106|consen 215 LIITCG-KGHLYFWTLRGGSLVKRQGIFEK-REKKFVLCVTFLENGDVITGDSGGNILIWSKGT--N--RISKQVHAHDG 288 (626)
T ss_pred EEEEeC-CceEEEEEccCCceEEEeecccc-ccceEEEEEEEcCCCCEEeecCCceEEEEeCCC--c--eEEeEeeecCC
Confidence 344333 77888998876555444443210 11 122223454455678899999999886532 1 11111111111
Q ss_pred Ce-EEEEEEeCCcceEEEecCCCeEEE-ecC--CcEEEeee--cccCceeeecccCCCCCCcEEEEeCCeEEEEEEcCCC
Q 004094 315 PI-TLRTFSSKNTTHVFAASDRPTVIY-SSN--KKLLYSNV--NLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQ 388 (774)
Q Consensus 315 pv-~l~~~~~~~~~~v~~~~~~p~~l~-~~~--~~~~~~~~--~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~ 388 (774)
-| .|..+ .++-++.|.+--.+. +++ .+++-..+ ..++++.+++= -++.++-.+.|.+..+++....
T Consensus 289 gv~~L~~l----r~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~----~~di~vGTtrN~iL~Gt~~~~f 360 (626)
T KOG2106|consen 289 GVFSLCML----RDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEG----KGDILVGTTRNFILQGTLENGF 360 (626)
T ss_pred ceEEEEEe----cCccEeecCccceEEeccccccccccccCchhcCCeeEEecC----CCcEEEeeccceEEEeeecCCc
Confidence 11 12221 134444454433222 221 11211111 12345555433 2345666789999999998753
Q ss_pred CeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCce
Q 004094 389 KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468 (774)
Q Consensus 389 ~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~ 468 (774)
.+.+. -=++.---++-||..+.|+-+.-+. .++|.+. -+.+-+..++ +.+.|+. |.. ..
T Consensus 361 ~~~v~--gh~delwgla~hps~~q~~T~gqdk----------~v~lW~~--~k~~wt~~~~--d~~~~~~---fhp--sg 419 (626)
T KOG2106|consen 361 TLTVQ--GHGDELWGLATHPSKNQLLTCGQDK----------HVRLWND--HKLEWTKIIE--DPAECAD---FHP--SG 419 (626)
T ss_pred eEEEE--ecccceeeEEcCCChhheeeccCcc----------eEEEccC--CceeEEEEec--CceeEee---ccC--cc
Confidence 32211 1122333466688877777665443 5777762 2333333332 2223332 322 23
Q ss_pred EEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc--cCeEEEE-ECCEEEEEEeeecCCCchhhh
Q 004094 469 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF--NGKLLAA-INQKIQLYKWMLRDDGTRELQ 545 (774)
Q Consensus 469 ~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~--~~~lv~~-~g~~l~v~~~~~~~~~~~~l~ 545 (774)
.+++||+ .||.+++++++..+-.++.. ..|+.++..- ..+|.++ -++.||+|+.+. + ..++.
T Consensus 420 ~va~Gt~----------~G~w~V~d~e~~~lv~~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~--~-g~~y~ 484 (626)
T KOG2106|consen 420 VVAVGTA----------TGRWFVLDTETQDLVTIHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA--N-GRKYS 484 (626)
T ss_pred eEEEeec----------cceEEEEecccceeEEEEec--CCceEEEEEcCCCCEEEEecCCCeEEEEEECC--C-CcEEE
Confidence 8999994 59999999988666666655 6666666533 4456554 457899999753 2 34555
Q ss_pred hhcccccceEEEEEEEe-CCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEee-------C----------
Q 004094 546 SECGHHGHILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD-------D---------- 607 (774)
Q Consensus 546 ~~~~~~~~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~-------~---------- 607 (774)
+.....+ .+++.|++. ++..+++-.-+- -++-|.+..-+..--.||. .|.+.-+-+. +
T Consensus 485 r~~k~~g-s~ithLDwS~Ds~~~~~~S~d~-eiLyW~~~~~~~~ts~kDv--kW~t~~c~lGF~v~g~s~~t~i~a~~rs 560 (626)
T KOG2106|consen 485 RVGKCSG-SPITHLDWSSDSQFLVSNSGDY-EILYWKPSECKQITSVKDV--KWATYTCTLGFEVFGGSDGTDINAVARS 560 (626)
T ss_pred EeeeecC-ceeEEeeecCCCceEEeccCce-EEEEEccccCcccceecce--eeeeeEEEEEEEEecccCCchHHHhhhh
Confidence 4433333 456777653 333344433332 2344554322211114553 4554433221 1
Q ss_pred ---CeEEEEccCCcEEEEeeCC
Q 004094 608 ---DIYLGAENNFNLFTVRKNS 626 (774)
Q Consensus 608 ---~~~l~~D~~gnl~~l~~~~ 626 (774)
+....+|.+|.+++|+|+-
T Consensus 561 ~~~~~lA~gdd~g~v~lf~yPc 582 (626)
T KOG2106|consen 561 HCEKLLASGDDFGKVHLFSYPC 582 (626)
T ss_pred hhhhhhhccccCceEEEEcccc
Confidence 1245789999999999964
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.36 E-value=0.4 Score=53.75 Aligned_cols=424 Identities=16% Similarity=0.164 Sum_probs=213.2
Q ss_pred CcEEEEecCCCceeeeEeCCCCCcEEEEEECCCEEEEEEc--CCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCC
Q 004094 153 GSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATG--GGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENP 230 (774)
Q Consensus 153 ~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~~~lvv~~~--~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~ 230 (774)
.-+++++.+++..+..|+.-...++..-++++..-+++.. ++.+....+.++..... -+-++..|+++.|.+..
T Consensus 84 ~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~-fkG~gGvVssl~F~~~~--- 159 (775)
T KOG0319|consen 84 QLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHS-FKGHGGVVSSLLFHPHW--- 159 (775)
T ss_pred ceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEE-ecCCCceEEEEEeCCcc---
Confidence 3446666666666777776333455555565554555553 35666666665333221 23567889999886532
Q ss_pred CCcceEEEEEecCCEEEEEECCCCCe-eEE--ecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccce
Q 004094 231 SYSQIAAVGMWTDISVRIFSLPDLNL-ITK--EHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRK 307 (774)
Q Consensus 231 ~~~~~~~vg~~~~~~i~i~~l~~~~~-~~~--~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~ 307 (774)
....++.|.. |+.+++|++.+-.. +.. ...+ ...++.+.. +...++-+.||-.+..|++..-. ..+
T Consensus 160 -~~~lL~sg~~-D~~v~vwnl~~~~tcl~~~~~H~S---~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~----~l~ 228 (775)
T KOG0319|consen 160 -NRWLLASGAT-DGTVRVWNLNDKRTCLHTMILHKS---AVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYK----KLK 228 (775)
T ss_pred -chhheeecCC-CceEEEEEcccCchHHHHHHhhhh---heeeeeecc--CCceEEEeccCcEEEEeehhhhh----hhh
Confidence 2345666666 99999999975322 211 1111 223444332 34557778899888888873210 111
Q ss_pred eeec--CCCC-eEEEEEEeCC-cceEEEecCCCeEEEecC--CcEEE--eeecccCceeeecccCCCCCCcEEEEeCCeE
Q 004094 308 KVSL--GTQP-ITLRTFSSKN-TTHVFAASDRPTVIYSSN--KKLLY--SNVNLKEVSHMCPFNSAAFPDSLAIAKEGEL 379 (774)
Q Consensus 308 ~~~l--G~~p-v~l~~~~~~~-~~~v~~~~~~p~~l~~~~--~~~~~--~~~~~~~i~~~~~f~~~~~~~~l~~~~~~~l 379 (774)
..++ +-.. +.+.. ..++ ...++..|++-.+-+.+. +...+ ..-..+.+....+... ...-++..++.+|
T Consensus 229 ~lp~ye~~E~vv~l~~-~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~--~~~~l~vtaeQnl 305 (775)
T KOG0319|consen 229 TLPLYESLESVVRLRE-ELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIES--MSQLLLVTAEQNL 305 (775)
T ss_pred eechhhheeeEEEech-hcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccc--cCceEEEEccceE
Confidence 1111 0001 11211 1111 124555566655544331 11111 0000222444443322 1223444556777
Q ss_pred EEEEEcCCCCeEEEEE-eCCCcccEEEEe-cCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEE
Q 004094 380 TIGTIDDIQKLHIRSI-PLGEHPRRICHQ-EQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSI 457 (774)
Q Consensus 380 ~i~~l~~~~~~~~~~i-~l~~tp~~i~y~-~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si 457 (774)
.+...++. -.+++| --.+...-+.|. |+.+.++|++.. +++|+++..+...- +--...|.++|+
T Consensus 306 ~l~d~~~l--~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs----------~~lr~y~~~~~~c~--ii~GH~e~vlSL 371 (775)
T KOG0319|consen 306 FLYDEDEL--TIVKQIVGYNDEILDMKFLGPEESHLAVATNS----------PELRLYTLPTSYCQ--IIPGHTEAVLSL 371 (775)
T ss_pred EEEEcccc--EEehhhcCCchhheeeeecCCccceEEEEeCC----------CceEEEecCCCceE--EEeCchhheeee
Confidence 77644432 112222 122334444443 566788888755 38999977655432 333456788888
Q ss_pred EEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEE---EEEeecCceeEeccccCe--EEEEEC--CEEE
Q 004094 458 LSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLI---AEKETKGAVYSLNAFNGK--LLAAIN--QKIQ 530 (774)
Q Consensus 458 ~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~---~~~~~~g~v~~i~~~~~~--lv~~~g--~~l~ 530 (774)
..|. ..-+|+-|. . --.+.+|++.++.-+.. ...-+.+.|.+++.-.++ ++++++ .++.
T Consensus 372 ~~~~----~g~llat~s-K---------D~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK 437 (775)
T KOG0319|consen 372 DVWS----SGDLLATGS-K---------DKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK 437 (775)
T ss_pred eecc----cCcEEEEec-C---------CceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence 7542 123444333 2 24788898854422221 123457788888875433 555554 4667
Q ss_pred EEEeeecCCCchhhhhhccc-----ccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCe-EEEEeccCCcceeEEEEE
Q 004094 531 LYKWMLRDDGTRELQSECGH-----HGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA-IEERARDYNANWMSAVEI 604 (774)
Q Consensus 531 v~~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~-l~~~a~D~~~~~v~~~~~ 604 (774)
+|.+....+......-.+.+ +--+..+.+.-.+..|..|-.-|-..++.+. +.. +..++. +.|.+-++.|
T Consensus 438 ~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le--~~~l~~vLsG--H~RGvw~V~F 513 (775)
T KOG0319|consen 438 LWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE--QLRLLGVLSG--HTRGVWCVSF 513 (775)
T ss_pred EecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc--CceEEEEeeC--CccceEEEEe
Confidence 76653210110001111111 1112234444344466667777777776554 333 344443 3455556777
Q ss_pred eeCCeEE-EEccCCcEEEEeeCC
Q 004094 605 LDDDIYL-GAENNFNLFTVRKNS 626 (774)
Q Consensus 605 l~~~~~l-~~D~~gnl~~l~~~~ 626 (774)
--.|.++ .+-.|+.+.+.....
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~ 536 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSIST 536 (775)
T ss_pred ccccceeEeccCCceEEEEEecc
Confidence 6656554 566688888888764
No 36
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.34 E-value=0.34 Score=52.49 Aligned_cols=317 Identities=16% Similarity=0.193 Sum_probs=148.4
Q ss_pred cCcEEEEecCCCceeeeEeCCCCCcEEEE--EE--CCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCC
Q 004094 152 SGSVRLVSSTSRELRNEWKSPPGYSVNVA--TA--NASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIG 227 (774)
Q Consensus 152 ~~~i~l~~~~~~~~~~~~~~~~~~~I~~a--~~--~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~ 227 (774)
.++|.+++.++.+.+..+.. +... ++ .. ++..+.++..++.+..+.+..+++ +.........-++++++
T Consensus 15 ~~~v~viD~~t~~~~~~i~~--~~~~-h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~--v~~i~~G~~~~~i~~s~-- 87 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPT--GGAP-HAGLKFSPDGRYLYVANRDGTVSVIDLATGKV--VATIKVGGNPRGIAVSP-- 87 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE---STTE-EEEEE-TT-SSEEEEEETTSEEEEEETTSSSE--EEEEE-SSEEEEEEE----
T ss_pred CCEEEEEECCCCeEEEEEcC--CCCc-eeEEEecCCCCEEEEEcCCCeEEEEECCcccE--EEEEecCCCcceEEEcC--
Confidence 47889999887666776654 2333 22 22 356788887777777666655443 23345566677888864
Q ss_pred CCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCC---Cc-cCceeEEeeeecCeeEEEEEeCC-CcEEEEEEecCCCc
Q 004094 228 ENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLG---GE-IIPRSVLLCAFEGISYLLCALGD-GHLLNFLLNMKTGE 302 (774)
Q Consensus 228 ~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~---~~-~~p~si~~~~~~~~~~L~vgl~~-G~l~~y~~~~~~~~ 302 (774)
...++++++|.++.+.|++..+++++..-... .+ ..++-..+.....+...++.+.+ |++........ ..
T Consensus 88 ----DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~-~~ 162 (369)
T PF02239_consen 88 ----DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP-KN 162 (369)
T ss_dssp ----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS-SC
T ss_pred ----CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc-cc
Confidence 25789999988999999999999887643221 11 12343444444445555555554 77765432221 11
Q ss_pred cccceeeecCCCCeEEEEEEeCCcceEEEe-cCCCeEEE-ecC-CcEEE-eeecccCce--eeecccCCCCCCcEEEE-e
Q 004094 303 LTDRKKVSLGTQPITLRTFSSKNTTHVFAA-SDRPTVIY-SSN-KKLLY-SNVNLKEVS--HMCPFNSAAFPDSLAIA-K 375 (774)
Q Consensus 303 l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~-~~~p~~l~-~~~-~~~~~-~~~~~~~i~--~~~~f~~~~~~~~l~~~-~ 375 (774)
+ ..+....|..|--.. +. .+...+++. .....+.. ..+ +++.. .+.. +... -.+.|....+ +-+.. .
T Consensus 163 ~-~~~~i~~g~~~~D~~-~d-pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g-~~p~~~~~~~~php~~--g~vw~~~ 236 (369)
T PF02239_consen 163 L-KVTTIKVGRFPHDGG-FD-PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG-KKPHPGPGANFPHPGF--GPVWATS 236 (369)
T ss_dssp E-EEEEEE--TTEEEEE-E--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S-SSBEETTEEEEEETTT--EEEEEEE
T ss_pred c-ceeeecccccccccc-cC-cccceeeecccccceeEEEeeccceEEEEeecc-ccccccccccccCCCc--ceEEeec
Confidence 1 112334454443221 11 112223331 12222222 222 22221 1110 0000 0111111111 22222 2
Q ss_pred -CCeEEEEEEcCC-------CCe-EEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEE
Q 004094 376 -EGELTIGTIDDI-------QKL-HIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTY 446 (774)
Q Consensus 376 -~~~l~i~~l~~~-------~~~-~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~ 446 (774)
.+...+..+... ..| .+++|++.+.|..+..||+++.+.|...-.. ....|.++|..+++.+.++
T Consensus 237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~------~~~~v~viD~~tl~~~~~i 310 (369)
T PF02239_consen 237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNP------DADTVQVIDKKTLKVVKTI 310 (369)
T ss_dssp BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-S------SHT-EEEEECCGTEEEE-H
T ss_pred cccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCC------CCceEEEEECcCcceeEEE
Confidence 222222233222 123 7899999999988999999997777633321 1458999999999887766
Q ss_pred ECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEe
Q 004094 447 PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE 506 (774)
Q Consensus 447 ~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~ 506 (774)
...++-.+. -.+|..++++.++ ..-. ..|+|.+|+... ++++....
T Consensus 311 ~~~~~~~~~---h~ef~~dG~~v~v-S~~~--------~~~~i~v~D~~T--l~~~~~i~ 356 (369)
T PF02239_consen 311 TPGPGKRVV---HMEFNPDGKEVWV-SVWD--------GNGAIVVYDAKT--LKEKKRIP 356 (369)
T ss_dssp HHHHT--EE---EEEE-TTSSEEEE-EEE----------TTEEEEEETTT--TEEEEEEE
T ss_pred eccCCCcEe---ccEECCCCCEEEE-EEec--------CCCEEEEEECCC--cEEEEEEE
Confidence 544443333 3457766654444 2221 335999998543 44444433
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.24 E-value=0.36 Score=58.37 Aligned_cols=222 Identities=14% Similarity=0.134 Sum_probs=126.0
Q ss_pred CCeEEEEEEcCCCCeEEEEEeC-CCcccEEEEecCC-CEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCce
Q 004094 376 EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQS-RTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEY 453 (774)
Q Consensus 376 ~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~-~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~ 453 (774)
++.+++..+...+. .+.+.- ...+..+.+++.. +.++.++.+ ..+++.|..+.+.+..+.. ...
T Consensus 554 Dg~v~lWd~~~~~~--~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D----------g~v~iWd~~~~~~~~~~~~--~~~ 619 (793)
T PLN00181 554 EGVVQVWDVARSQL--VTEMKEHEKRVWSIDYSSADPTLLASGSDD----------GSVKLWSINQGVSIGTIKT--KAN 619 (793)
T ss_pred CCeEEEEECCCCeE--EEEecCCCCCEEEEEEcCCCCCEEEEEcCC----------CEEEEEECCCCcEEEEEec--CCC
Confidence 67888888765432 222221 2346788898744 444444433 3799999988877776653 234
Q ss_pred EEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCe-EEEE-ECCEEEE
Q 004094 454 GCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK-LLAA-INQKIQL 531 (774)
Q Consensus 454 ~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~-lv~~-~g~~l~v 531 (774)
+.|+. +......++++|+. .|.|++|++.+.+..+.....+.++|+++.-.++. |+.+ ..+.|.+
T Consensus 620 v~~v~---~~~~~g~~latgs~----------dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~iki 686 (793)
T PLN00181 620 ICCVQ---FPSESGRSLAFGSA----------DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKL 686 (793)
T ss_pred eEEEE---EeCCCCCEEEEEeC----------CCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEE
Confidence 44443 43344677888863 48999999976543222223467889988866554 4443 3468889
Q ss_pred EEeeecCC--CchhhhhhcccccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEE----------EeccCCccee
Q 004094 532 YKWMLRDD--GTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEE----------RARDYNANWM 599 (774)
Q Consensus 532 ~~~~~~~~--~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~----------~a~D~~~~~v 599 (774)
|++..... ....+.....+......++....+++|++|..-+.+.++........... ..-+....++
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V 766 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFI 766 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEE
Confidence 87632100 00111111111112233445556789999998888877543211111100 0012233457
Q ss_pred EEEEEeeCC-eEEEEccCCcEEEEee
Q 004094 600 SAVEILDDD-IYLGAENNFNLFTVRK 624 (774)
Q Consensus 600 ~~~~~l~~~-~~l~~D~~gnl~~l~~ 624 (774)
.++.+-.+. .+++++.+|+|.+++.
T Consensus 767 ~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 767 SSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEcCCCCeEEEecCCCcEEEEec
Confidence 777665444 4678889999999874
No 38
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.18 E-value=0.0095 Score=62.94 Aligned_cols=257 Identities=13% Similarity=0.196 Sum_probs=139.6
Q ss_pred CCeEEEEEEcCCCCeEEEEEeC-CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceE
Q 004094 376 EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYG 454 (774)
Q Consensus 376 ~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~ 454 (774)
++.+.+..+....+. +|...- ...++.+.+.+....|+-+..+. .+++.|..|++++.++. .++.+
T Consensus 236 D~~vklW~vy~~~~~-lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~----------~lKlwDtETG~~~~~f~--~~~~~ 302 (503)
T KOG0282|consen 236 DGLVKLWNVYDDRRC-LRTFKGHRKPVRDASFNNCGTSFLSASFDR----------FLKLWDTETGQVLSRFH--LDKVP 302 (503)
T ss_pred CceEEEEEEecCcce-ehhhhcchhhhhhhhccccCCeeeeeecce----------eeeeeccccceEEEEEe--cCCCc
Confidence 577888888764332 222221 12355677888777777777664 89999999999887665 46777
Q ss_pred EEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEecccc-C-eEEEEE-CCEEEE
Q 004094 455 CSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFN-G-KLLAAI-NQKIQL 531 (774)
Q Consensus 455 ~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~-~-~lv~~~-g~~l~v 531 (774)
+|++ |..++.+.+++|+. .|+|.-|++..+++-.-+ ...-|+|..|.-+. | +.+.+. .+.+.+
T Consensus 303 ~cvk---f~pd~~n~fl~G~s----------d~ki~~wDiRs~kvvqeY-d~hLg~i~~i~F~~~g~rFissSDdks~ri 368 (503)
T KOG0282|consen 303 TCVK---FHPDNQNIFLVGGS----------DKKIRQWDIRSGKVVQEY-DRHLGAILDITFVDEGRRFISSSDDKSVRI 368 (503)
T ss_pred eeee---cCCCCCcEEEEecC----------CCcEEEEeccchHHHHHH-HhhhhheeeeEEccCCceEeeeccCccEEE
Confidence 7765 55555788899984 489999999877632211 13467888888773 3 344444 478899
Q ss_pred EEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEeccccEEEE----EEEccCCeEEEEeccCCcceeEEEEEeeC
Q 004094 532 YKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLL----IYKHEEGAIEERARDYNANWMSAVEILDD 607 (774)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~----~~~~~~~~l~~~a~D~~~~~v~~~~~l~~ 607 (774)
|+|... ...++.....+.+++ .+.+...++.+++=.+-.-+.++ +|+....+ ...+-..+-....+.|-.+
T Consensus 369 We~~~~--v~ik~i~~~~~hsmP-~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK--~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 369 WENRIP--VPIKNIADPEMHTMP-CLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK--RFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred EEcCCC--ccchhhcchhhccCc-ceecCCCCCeehhhccCceEEEEecccccccCHhh--hhcceeccCceeeEEEcCC
Confidence 887532 112222211111111 22222233322222222222221 12211110 0011111222234555555
Q ss_pred Ce-EEEEccCCcEEEEeeCCCCCCccccceeeeEEEEEcCcccceEEeeeeeecCCCCCCCCccEEEEEccccceEE
Q 004094 608 DI-YLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGV 683 (774)
Q Consensus 608 ~~-~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gsi~~ 683 (774)
+. ++.+|.+|.++++..++. +|......|-+-.+. ...+ | .....++.++.+|.|..
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~--------kl~~~lkah~~~ci~-----v~wH--P----~e~Skvat~~w~G~Iki 501 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTT--------KLVSKLKAHDQPCIG-----VDWH--P----VEPSKVATCGWDGLIKI 501 (503)
T ss_pred CCeEEeecCCccEEEeechhh--------hhhhccccCCcceEE-----EEec--C----CCcceeEecccCceeEe
Confidence 44 557999999999999863 443333333222221 1111 1 22356777788998864
No 39
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=97.17 E-value=0.62 Score=52.05 Aligned_cols=72 Identities=24% Similarity=0.337 Sum_probs=48.6
Q ss_pred EEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEE----ecCCC-----------------ccCceeEEeeeec
Q 004094 219 SCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITK----EHLGG-----------------EIIPRSVLLCAFE 277 (774)
Q Consensus 219 s~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~----~~l~~-----------------~~~p~si~~~~~~ 277 (774)
.|+.++ +.++++||. +|.+++|+-.++.-+.+ +.++. ...|..+++.--+
T Consensus 264 nCIcVs--------~r~I~cgCa-~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fde 334 (1080)
T KOG1408|consen 264 NCICVS--------SRLIACGCA-KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDE 334 (1080)
T ss_pred ceeeee--------cceEEEeec-cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecC
Confidence 477663 689999999 99999998766543321 12211 1345566544223
Q ss_pred CeeEEEEEeCCCcEEEEEEecC
Q 004094 278 GISYLLCALGDGHLLNFLLNMK 299 (774)
Q Consensus 278 ~~~~L~vgl~~G~l~~y~~~~~ 299 (774)
...+|-|-..|..|++|.+++.
T Consensus 335 t~~klscVYndhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 335 TTDKLSCVYNDHSLYVWDVRDV 356 (1080)
T ss_pred CCceEEEEEcCceEEEEecccc
Confidence 5678999999999999988764
No 40
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.48 Score=48.95 Aligned_cols=278 Identities=21% Similarity=0.278 Sum_probs=140.4
Q ss_pred ceEEEEEec---CCEEEEEECCC----CCeeEEecCCCccCceeEEeeeecCeeEEEEEeC---CCcEEEEEEecCCCcc
Q 004094 234 QIAAVGMWT---DISVRIFSLPD----LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALG---DGHLLNFLLNMKTGEL 303 (774)
Q Consensus 234 ~~~~vg~~~---~~~i~i~~l~~----~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~---~G~l~~y~~~~~~~~l 303 (774)
..+.||+++ +.-|++|.+.. +..+ +.......|.=+.+.+ ++.+|+++-+ .|.+..|++|+.+|.|
T Consensus 3 ~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~--~~v~~~~nptyl~~~~--~~~~LY~v~~~~~~ggvaay~iD~~~G~L 78 (346)
T COG2706 3 QTVYIGTYTKRESQGIYVFNLDTKTGELSLL--QLVAELGNPTYLAVNP--DQRHLYVVNEPGEEGGVAAYRIDPDDGRL 78 (346)
T ss_pred eEEEEeeecccCCCceEEEEEeCcccccchh--hhccccCCCceEEECC--CCCEEEEEEecCCcCcEEEEEEcCCCCeE
Confidence 356789887 56799999873 2221 1111112333333322 3445766555 4889999999988988
Q ss_pred ccceeeec-CCCCeEEEEEEeCCcceEEEecCCCeE--EEe--cCCcEEEe----eeccc--Cceeeec-ccCC-CCCCc
Q 004094 304 TDRKKVSL-GTQPITLRTFSSKNTTHVFAASDRPTV--IYS--SNKKLLYS----NVNLK--EVSHMCP-FNSA-AFPDS 370 (774)
Q Consensus 304 ~~~~~~~l-G~~pv~l~~~~~~~~~~v~~~~~~p~~--l~~--~~~~~~~~----~~~~~--~i~~~~~-f~~~-~~~~~ 370 (774)
+......+ |..|..+. +. .....||+..=..-. ++. .+|.+.-. .-... .....++ -|.. ..|++
T Consensus 79 t~ln~~~~~g~~p~yvs-vd-~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~ 156 (346)
T COG2706 79 TFLNRQTLPGSPPCYVS-VD-EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG 156 (346)
T ss_pred EEeeccccCCCCCeEEE-EC-CCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC
Confidence 76544333 44554332 21 123355554321111 111 12222100 00000 0000011 1111 12343
Q ss_pred -EEEE-e--CCeEEEEEEcCCC--CeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEE--ECC--Cc
Q 004094 371 -LAIA-K--EGELTIGTIDDIQ--KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLL--DDQ--TF 440 (774)
Q Consensus 371 -l~~~-~--~~~l~i~~l~~~~--~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~--d~~--~~ 440 (774)
++++ + .+.+.+..++... ....-.++=|.-||+|+|||..+..-+++-= .+.|.++ |+. .+
T Consensus 157 ~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL---------~stV~v~~y~~~~g~~ 227 (346)
T COG2706 157 RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL---------NSTVDVLEYNPAVGKF 227 (346)
T ss_pred CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEecc---------CCEEEEEEEcCCCceE
Confidence 4443 3 5888888888432 2334455678899999999998855554421 2334433 332 22
Q ss_pred eEEEEEE-CCCC-ceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe--CCeEEEEEEEeecCc-eeEec
Q 004094 441 EFISTYP-LDTF-EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE--DGKLQLIAEKETKGA-VYSLN 515 (774)
Q Consensus 441 ~~i~~~~-~~~~-E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~--~~kl~~~~~~~~~g~-v~~i~ 515 (774)
+.+.++. ++++ .--.....+.+..+ .+|+.+.- + ..-.|-+|.+. .++|+++......|- +....
T Consensus 228 ~~lQ~i~tlP~dF~g~~~~aaIhis~d-GrFLYasN---R------g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~ 297 (346)
T COG2706 228 EELQTIDTLPEDFTGTNWAAAIHISPD-GRFLYASN---R------GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFN 297 (346)
T ss_pred EEeeeeccCccccCCCCceeEEEECCC-CCEEEEec---C------CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccce
Confidence 3333221 1111 11122333445543 34555442 2 11288899998 468999998888886 66554
Q ss_pred cc-cCeEEEEECC---EEEEEEeee
Q 004094 516 AF-NGKLLAAINQ---KIQLYKWML 536 (774)
Q Consensus 516 ~~-~~~lv~~~g~---~l~v~~~~~ 536 (774)
-- .|+++++.++ .|.+|+.+.
T Consensus 298 i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 298 INPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred eCCCCCEEEEEccCCCcEEEEEEcC
Confidence 32 3555555553 688999763
No 41
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.07 E-value=0.064 Score=56.60 Aligned_cols=122 Identities=15% Similarity=0.238 Sum_probs=64.8
Q ss_pred eeeeEeCCCCCcEEEEEEC--CCEEEEEEcCCeEEE-EEEcCceEEEEEec-cCC-ceeEEEEeCCCCCCCCCcceEEEE
Q 004094 165 LRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVY-LEIGDGILTEVKHA-QLE-YEISCLDINPIGENPSYSQIAAVG 239 (774)
Q Consensus 165 ~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~~~~-~~~~~~~l~~~~~~-~l~-~~is~l~~~~~~~~~~~~~~~~vg 239 (774)
.++.... .+.+|..|... +...+++.+....+| +.+...++.++.+. .++ .-+-.+.+++ .++++++.
T Consensus 249 ~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh------d~~fia~~ 321 (514)
T KOG2055|consen 249 KLQSIHL-EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH------DSNFIAIA 321 (514)
T ss_pred hheeeee-ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC------CCCeEEEc
Confidence 4444443 33567777654 443555543344333 23333444443211 111 0111233333 24577776
Q ss_pred EecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEec
Q 004094 240 MWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 240 ~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 298 (774)
-- +|.|+++...+.+.+.+..+++ ...++++. .+...|++..++|++.+|.+..
T Consensus 322 G~-~G~I~lLhakT~eli~s~KieG--~v~~~~fs--Sdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 322 GN-NGHIHLLHAKTKELITSFKIEG--VVSDFTFS--SDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred cc-CceEEeehhhhhhhhheeeecc--EEeeEEEe--cCCcEEEEEcCCceEEEEecCC
Confidence 66 8899999887777665544542 33444443 2346678888899998887764
No 42
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.03 E-value=0.3 Score=49.24 Aligned_cols=245 Identities=18% Similarity=0.256 Sum_probs=126.8
Q ss_pred cCcEEEEecCCCceeeeEeCCCCCcEEEEEE-CCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCC
Q 004094 152 SGSVRLVSSTSRELRNEWKSPPGYSVNVATA-NASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENP 230 (774)
Q Consensus 152 ~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~-~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~ 230 (774)
..++|+++..........+ .+.+|+.|+. ++..+++..-++.+..+.+..+.-..+. ..+..+.|+....
T Consensus 34 DgslrlYdv~~~~l~~~~~--~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~ig--th~~~i~ci~~~~----- 104 (323)
T KOG1036|consen 34 DGSLRLYDVPANSLKLKFK--HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIG--THDEGIRCIEYSY----- 104 (323)
T ss_pred cCcEEEEeccchhhhhhee--cCCceeeeeccCCceEEEeccCceEEEEEecCCcceeec--cCCCceEEEEeec-----
Confidence 4456666655422222222 3457888884 5567777666777777676543322332 4456788997643
Q ss_pred CCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeee
Q 004094 231 SYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVS 310 (774)
Q Consensus 231 ~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~ 310 (774)
....++.|.| |++|++|+...-..+.. + -.+..+--... ....|+||+.+-.+..|.+..... ...++..+
T Consensus 105 -~~~~vIsgsW-D~~ik~wD~R~~~~~~~--~---d~~kkVy~~~v-~g~~LvVg~~~r~v~iyDLRn~~~-~~q~reS~ 175 (323)
T KOG1036|consen 105 -EVGCVISGSW-DKTIKFWDPRNKVVVGT--F---DQGKKVYCMDV-SGNRLVVGTSDRKVLIYDLRNLDE-PFQRRESS 175 (323)
T ss_pred -cCCeEEEccc-CccEEEEeccccccccc--c---ccCceEEEEec-cCCEEEEeecCceEEEEEcccccc-hhhhcccc
Confidence 2456778999 99999999764222111 1 12333321222 246799999999999999864221 11222211
Q ss_pred c--CCCCeEEEEEEeCCcceEEEec--CCCeEEEecC------Cc--EEEeeecccCceeeecccCCCCCC---cEEEEe
Q 004094 311 L--GTQPITLRTFSSKNTTHVFAAS--DRPTVIYSSN------KK--LLYSNVNLKEVSHMCPFNSAAFPD---SLAIAK 375 (774)
Q Consensus 311 l--G~~pv~l~~~~~~~~~~v~~~~--~~p~~l~~~~------~~--~~~~~~~~~~i~~~~~f~~~~~~~---~l~~~~ 375 (774)
+ -++-|.+.| ...+.++.+ .|..+=|-+. .+ |+.+....+...-+-|.|+-++.. .|+-..
T Consensus 176 lkyqtR~v~~~p----n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG 251 (323)
T KOG1036|consen 176 LKYQTRCVALVP----NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG 251 (323)
T ss_pred ceeEEEEEEEec----CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecC
Confidence 1 122233333 122333332 2222222211 12 344555555554455554433221 232222
Q ss_pred -CCeEEEEEEcCCCCeEEEEEeC-CCcccEEEEecCCCEEEEEEecc
Q 004094 376 -EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLKN 420 (774)
Q Consensus 376 -~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~ 420 (774)
++-+.+..+.+.+++ +.++= ....-.++++.+..++|++++-.
T Consensus 252 sDG~V~~Wd~~~rKrl--~q~~~~~~SI~slsfs~dG~~LAia~sy~ 296 (323)
T KOG1036|consen 252 SDGIVNIWDLFNRKRL--KQLAKYETSISSLSFSMDGSLLAIASSYQ 296 (323)
T ss_pred CCceEEEccCcchhhh--hhccCCCCceEEEEeccCCCeEEEEechh
Confidence 344555555443321 11111 12356788999999999998875
No 43
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=96.96 E-value=0.18 Score=49.22 Aligned_cols=225 Identities=14% Similarity=0.143 Sum_probs=130.4
Q ss_pred EEEEeCCeEEEEEEcCCCCeEEEEEeCC-CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC
Q 004094 371 LAIAKEGELTIGTIDDIQKLHIRSIPLG-EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 449 (774)
Q Consensus 371 l~~~~~~~l~i~~l~~~~~~~~~~i~l~-~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~ 449 (774)
+..+....+++..+.+.+.-++.++... ..+..+.|+.+.+-..-.. +-+.+|+.|-.+... .-+|+
T Consensus 55 LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs----------eDgt~kIWdlR~~~~--qR~~~ 122 (311)
T KOG0315|consen 55 LAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGS----------EDGTVKIWDLRSLSC--QRNYQ 122 (311)
T ss_pred hhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecC----------CCceEEEEeccCccc--chhcc
Confidence 3344466778888877665566666543 3444555554444322221 124788887765332 22344
Q ss_pred CCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEEEECC-
Q 004094 450 TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAINQ- 527 (774)
Q Consensus 450 ~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~~g~- 527 (774)
.+-.++++. +. .+..-+++|+ .+|.|.+|++.++.+...---+..-+|+++... +|..++|+++
T Consensus 123 ~~spVn~vv---lh-pnQteLis~d----------qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnk 188 (311)
T KOG0315|consen 123 HNSPVNTVV---LH-PNQTELISGD----------QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNK 188 (311)
T ss_pred CCCCcceEE---ec-CCcceEEeec----------CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCC
Confidence 445566654 22 3455677787 469999999987643322112334677777765 6777777775
Q ss_pred -EEEEEEeeecCCCchhhhhhcccccce-EEEE--EEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEE
Q 004094 528 -KIQLYKWMLRDDGTRELQSECGHHGHI-LALY--VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVE 603 (774)
Q Consensus 528 -~l~v~~~~~~~~~~~~l~~~~~~~~~~-~~~~--l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~ 603 (774)
++|++++-. ..+..+|.++..++.+. ++++ ++..+.+++.+-+-+-+.+ |+.++.-..++.-+-..+|+-.|.
T Consensus 189 G~cyvW~l~~-~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~i--wn~~~~~kle~~l~gh~rWvWdc~ 265 (311)
T KOG0315|consen 189 GNCYVWRLLN-HQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKI--WNTDDFFKLELVLTGHQRWVWDCA 265 (311)
T ss_pred ccEEEEEccC-CCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEE--EecCCceeeEEEeecCCceEEeee
Confidence 466666532 22334566665555442 4443 3334558888888888766 555555223333455669999999
Q ss_pred EeeCCeEEEE-ccCCcEEEEee
Q 004094 604 ILDDDIYLGA-ENNFNLFTVRK 624 (774)
Q Consensus 604 ~l~~~~~l~~-D~~gnl~~l~~ 624 (774)
|-.++.+|++ ..++-..+...
T Consensus 266 FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 266 FSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred eccCccEEEecCCCCceeeccc
Confidence 9988887754 34544444443
No 44
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.94 E-value=0.96 Score=50.37 Aligned_cols=116 Identities=17% Similarity=0.147 Sum_probs=69.5
Q ss_pred CCCCcEEEEEEC-CCEEEEEEcCCeEEEEEEcCceEEE-EEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEE
Q 004094 172 PPGYSVNVATAN-ASQVLLATGGGHLVYLEIGDGILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249 (774)
Q Consensus 172 ~~~~~I~~a~~~-~~~lvv~~~~~~~~~~~~~~~~l~~-~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~ 249 (774)
|++.+|.+-+.. +.-++=+--++.+..+.+-+ +.+ ...-.....|-++++.+. +..++|||. +|.+..+
T Consensus 67 ~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~--lk~~~~~d~~gg~IWsiai~p~------~~~l~Igcd-dGvl~~~ 137 (691)
T KOG2048|consen 67 PEDRSIESLAWAEGGRLFSSGLSGSITEWDLHT--LKQKYNIDSNGGAIWSIAINPE------NTILAIGCD-DGVLYDF 137 (691)
T ss_pred CCCCceeeEEEccCCeEEeecCCceEEEEeccc--CceeEEecCCCcceeEEEeCCc------cceEEeecC-CceEEEE
Confidence 556678777744 33443333356666655432 222 122344567888888763 578999999 9988888
Q ss_pred ECCCCCeeEEecCCCccCceeEEeeeec-CeeEEEEEeCCCcEEEEEEec
Q 004094 250 SLPDLNLITKEHLGGEIIPRSVLLCAFE-GISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 250 ~l~~~~~~~~~~l~~~~~p~si~~~~~~-~~~~L~vgl~~G~l~~y~~~~ 298 (774)
+...-.+.+...+... ..|-+.+ .+. +..+++.|+.||.+.++....
T Consensus 138 s~~p~~I~~~r~l~rq-~sRvLsl-sw~~~~~~i~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 138 SIGPDKITYKRSLMRQ-KSRVLSL-SWNPTGTKIAGGSIDGVIRIWDVKS 185 (691)
T ss_pred ecCCceEEEEeecccc-cceEEEE-EecCCccEEEecccCceEEEEEcCC
Confidence 8755455444444321 1222222 333 455699999999999987654
No 45
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.90 E-value=0.16 Score=51.14 Aligned_cols=186 Identities=15% Similarity=0.163 Sum_probs=107.3
Q ss_pred eEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCcc-CceeEEeeeecCeeEEEEEeCCCcEEEEEE
Q 004094 218 ISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEI-IPRSVLLCAFEGISYLLCALGDGHLLNFLL 296 (774)
Q Consensus 218 is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~-~p~si~~~~~~~~~~L~vgl~~G~l~~y~~ 296 (774)
..|+.|++ -+.++++||. +|.+.||.+.++.+-- .++.-. +..|++-.+ +.-.|+-.++|-.+..|.+
T Consensus 26 a~~~~Fs~------~G~~lAvGc~-nG~vvI~D~~T~~iar--~lsaH~~pi~sl~WS~--dgr~LltsS~D~si~lwDl 94 (405)
T KOG1273|consen 26 AECCQFSR------WGDYLAVGCA-NGRVVIYDFDTFRIAR--MLSAHVRPITSLCWSR--DGRKLLTSSRDWSIKLWDL 94 (405)
T ss_pred cceEEecc------Ccceeeeecc-CCcEEEEEccccchhh--hhhccccceeEEEecC--CCCEeeeecCCceeEEEec
Confidence 45777754 3689999999 9999999998765411 111111 223443332 3456888889988888876
Q ss_pred ecCCCccccceeeecCCCCeEEEEEEeCCcceEE--EecCCCeEEEecCCcEEEeeeccc-CceeeecccCCCCCCc-EE
Q 004094 297 NMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVF--AASDRPTVIYSSNKKLLYSNVNLK-EVSHMCPFNSAAFPDS-LA 372 (774)
Q Consensus 297 ~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~--~~~~~p~~l~~~~~~~~~~~~~~~-~i~~~~~f~~~~~~~~-l~ 372 (774)
-. |.+ .+.+.+ ..||....+.-...+.++ ..-..|.++-.+++.-.+.|.+.+ .....+. +....+.+ .+
T Consensus 95 ~~--gs~--l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas-~~~fdr~g~yI 168 (405)
T KOG1273|consen 95 LK--GSP--LKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSAS-HGVFDRRGKYI 168 (405)
T ss_pred cC--CCc--eeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccc-cccccCCCCEE
Confidence 54 332 111222 455544333212223222 235668877665555555565532 2222222 11111222 33
Q ss_pred E--EeCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEecc
Q 004094 373 I--AKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKN 420 (774)
Q Consensus 373 ~--~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~ 420 (774)
+ ..+|.+.+...++..-...-+|..-...+.|.+....+.+++-|+++
T Consensus 169 itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDR 218 (405)
T KOG1273|consen 169 ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDR 218 (405)
T ss_pred EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCc
Confidence 3 35788888888887655555666556778888888888888888775
No 46
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.90 E-value=0.6 Score=47.34 Aligned_cols=256 Identities=14% Similarity=0.193 Sum_probs=143.4
Q ss_pred ccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEE-EEEeeeeCC
Q 004094 401 PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYY-CVGTAYVLP 479 (774)
Q Consensus 401 p~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i-~VGT~~~~~ 479 (774)
+..+.+..+..+|+|++.. .+++++-+.++...+-++.. ....+..+-+. .+|+ +||.+..
T Consensus 8 ~lsvs~NQD~ScFava~~~-----------Gfriyn~~P~ke~~~r~~~~--~G~~~veMLfR---~N~laLVGGg~~-- 69 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDT-----------GFRIYNCDPFKESASRQFID--GGFKIVEMLFR---SNYLALVGGGSR-- 69 (346)
T ss_pred eeEEEEccCCceEEEEecC-----------ceEEEecCchhhhhhhcccc--CchhhhhHhhh---hceEEEecCCCC--
Confidence 3447888888999999865 46666544444333222221 11222222222 3444 4564321
Q ss_pred CCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEECCEEEEEEeeecC------------CC-------
Q 004094 480 EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRD------------DG------- 540 (774)
Q Consensus 480 ~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g~~l~v~~~~~~~------------~~------- 540 (774)
..-..-.+++|+ +.+=+.+.+.++.++|.+|+--.++|++..-++|+||.+...- .|
T Consensus 70 --pky~pNkviIWD--D~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~ 145 (346)
T KOG2111|consen 70 --PKYPPNKVIIWD--DLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT 145 (346)
T ss_pred --CCCCCceEEEEe--cccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCC
Confidence 112446788887 6566677788899999999988999999999999999975100 00
Q ss_pred --------------chhhhhhccc-----------ccceEEEEEEEeCCEEEEEeccccEEEEEEEccC-CeEEEEeccC
Q 004094 541 --------------TRELQSECGH-----------HGHILALYVQTRGDFIVVGDLMKSISLLIYKHEE-GAIEERARDY 594 (774)
Q Consensus 541 --------------~~~l~~~~~~-----------~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~-~~l~~~a~D~ 594 (774)
+.++...+.. ++.+..+.|...|. .++.-..+|--+=-|+.++ ..+.++-|-.
T Consensus 146 ~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RRG~ 224 (346)
T KOG2111|consen 146 SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRRGV 224 (346)
T ss_pred CCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeecCC
Confidence 0001000000 00111123333454 3444455665444577654 5678888888
Q ss_pred CcceeEEEEEeeCCeEE-EEccCCcEEEEeeCCCCCCcccccee--------------eeEEEEEcCcccceEEeeeeee
Q 004094 595 NANWMSAVEILDDDIYL-GAENNFNLFTVRKNSEGATDEERGRL--------------EVVGEYHLGEFVNRFRHGSLVM 659 (774)
Q Consensus 595 ~~~~v~~~~~l~~~~~l-~~D~~gnl~~l~~~~~~~~~~~~~~L--------------~~~~~f~lg~~v~~~~~~~~~~ 659 (774)
.+-.+.++.|=.+..++ ++-..|.+++|.......+..+...+ -..+.|++.+.-..+.
T Consensus 225 d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~------ 298 (346)
T KOG2111|consen 225 DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCII------ 298 (346)
T ss_pred chheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEE------
Confidence 88888877776555554 66678999999986533221100001 1233444443211111
Q ss_pred cCCCCCCCCccEEEEEccccceEEEEecCh
Q 004094 660 RLPDSDVGQIPTVIFGTVNGVIGVIASLPH 689 (774)
Q Consensus 660 ~~~~~~~~~~~~il~~t~~Gsi~~i~~l~~ 689 (774)
.| ....+.++..+.||+.+.+.--.+
T Consensus 299 ~f----g~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 299 AF----GSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred Ee----cCCCCeEEEEEeCCcEEEEEeccc
Confidence 01 112267888889999987766644
No 47
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.88 E-value=0.72 Score=47.92 Aligned_cols=261 Identities=16% Similarity=0.155 Sum_probs=129.6
Q ss_pred EEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEE-EEEeCCCcEEEEEEecCCCccccceeeecCCCC
Q 004094 237 AVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYL-LCALGDGHLLNFLLNMKTGELTDRKKVSLGTQP 315 (774)
Q Consensus 237 ~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L-~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~p 315 (774)
++..-.++.+.+|++.+.+.+...... ..|+++.+.+ +...+ +++..+|.+..|+... +++. +....+..|
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~--~~~~~l~~~~--dg~~l~~~~~~~~~v~~~d~~~--~~~~--~~~~~~~~~ 75 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPVG--QRPRGITLSK--DGKLLYVCASDSDTIQVIDLAT--GEVI--GTLPSGPDP 75 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEECC--CCCCceEECC--CCCEEEEEECCCCeEEEEECCC--CcEE--EeccCCCCc
Confidence 333334899999999876665433322 2355555443 23345 4567788888877543 3221 122233334
Q ss_pred eEEEEEEeCCcceEEEecC--CCeEEEecC-Cc-EEEeeecccCceeeecccCCCCCC--cEEEEeCCeEEEEEEcCCCC
Q 004094 316 ITLRTFSSKNTTHVFAASD--RPTVIYSSN-KK-LLYSNVNLKEVSHMCPFNSAAFPD--SLAIAKEGELTIGTIDDIQK 389 (774)
Q Consensus 316 v~l~~~~~~~~~~v~~~~~--~p~~l~~~~-~~-~~~~~~~~~~i~~~~~f~~~~~~~--~l~~~~~~~l~i~~l~~~~~ 389 (774)
..+ .+. .+.+.+++.+. ....++..+ .+ +...+.. ..+.++ .| .|+ .++....+.-.+..++....
T Consensus 76 ~~~-~~~-~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~-~~----~~dg~~l~~~~~~~~~~~~~d~~~~ 147 (300)
T TIGR03866 76 ELF-ALH-PNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGM-AV----SPDGKIVVNTSETTNMAHFIDTKTY 147 (300)
T ss_pred cEE-EEC-CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceE-EE----CCCCCEEEEEecCCCeEEEEeCCCC
Confidence 332 222 22345666542 223333222 22 1111111 011111 11 122 23333332211222233223
Q ss_pred eEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCc----eEEEEEEEEEcCC
Q 004094 390 LHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE----YGCSILSCSFSDD 465 (774)
Q Consensus 390 ~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E----~~~si~~~~~~~~ 465 (774)
-..+.++.+..|+.+.++++.+.+++.+.. ...+.++|..+++.+.++.+.... ... ...+.+..+
T Consensus 148 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---------~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~s~d 217 (300)
T TIGR03866 148 EIVDNVLVDQRPRFAEFTADGKELWVSSEI---------GGTVSVIDVATRKVIKKITFEIPGVHPEAVQ-PVGIKLTKD 217 (300)
T ss_pred eEEEEEEcCCCccEEEECCCCCEEEEEcCC---------CCEEEEEEcCcceeeeeeeecccccccccCC-ccceEECCC
Confidence 344556677889899999988877665432 136999999988887776654211 111 111224433
Q ss_pred CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cC-eEEEEE--CCEEEEEEee
Q 004094 466 SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAI--NQKIQLYKWM 535 (774)
Q Consensus 466 ~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~-~lv~~~--g~~l~v~~~~ 535 (774)
++ +++++.+ ..+++.+|+....++.. .....+.+.+++-- +| +|+++. .++|++|+..
T Consensus 218 g~-~~~~~~~---------~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 218 GK-TAFVALG---------PANRVAVVDAKTYEVLD--YLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred CC-EEEEEcC---------CCCeEEEEECCCCcEEE--EEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 33 3444332 12578999886555432 22345677777643 34 465554 4688887753
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=1.4 Score=48.69 Aligned_cols=176 Identities=12% Similarity=0.118 Sum_probs=102.8
Q ss_pred EEEecCceEEEEecCCCCeeeeeecCccccCcceeeeecCCCeEEEEecCcEEEEecCCCceeeeEeCCCCCcEEEEEEC
Q 004094 104 VVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATAN 183 (774)
Q Consensus 104 i~S~~~~T~vl~~~~~~~~~e~~~~~f~~~~~Tl~~~~~~~~~~vQVT~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~ 183 (774)
+..+..+|+|=++.-.+ ..+...-|.--...+.+|.- ...||+++.++..++..+..-.+ =|.+-++.
T Consensus 39 IWnyetqtmVksfeV~~--~PvRa~kfiaRknWiv~GsD---------D~~IrVfnynt~ekV~~FeAH~D-yIR~iavH 106 (794)
T KOG0276|consen 39 IWNYETQTMVKSFEVSE--VPVRAAKFIARKNWIVTGSD---------DMQIRVFNYNTGEKVKTFEAHSD-YIRSIAVH 106 (794)
T ss_pred EEecccceeeeeeeecc--cchhhheeeeccceEEEecC---------CceEEEEecccceeeEEeecccc-ceeeeeec
Confidence 34455566664442110 01233445555555555532 34678999998888888876443 37777777
Q ss_pred CC--EEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEec
Q 004094 184 AS--QVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEH 261 (774)
Q Consensus 184 ~~--~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~ 261 (774)
|. .++-+.++-.+..+..+++=..+..-.-.++-|-+++|.|-. .+..+-++- |+++.||++..-.+.++..
T Consensus 107 Pt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD-----~ntFaS~sL-DrTVKVWslgs~~~nfTl~ 180 (794)
T KOG0276|consen 107 PTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD-----PNTFASASL-DRTVKVWSLGSPHPNFTLE 180 (794)
T ss_pred CCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCC-----ccceeeeec-cccEEEEEcCCCCCceeee
Confidence 55 444444455666666654211111112356778899997632 344454555 9999999996544433211
Q ss_pred CCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEec
Q 004094 262 LGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 262 l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 298 (774)
+-+.-...+.....++++||+-|..|-.+-+|....
T Consensus 181 -gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 181 -GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred -ccccCcceEEeccCCCcceEEecCCCceEEEeecch
Confidence 111223455555556889999999888888877654
No 49
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.51 E-value=0.29 Score=50.48 Aligned_cols=154 Identities=17% Similarity=0.222 Sum_probs=102.9
Q ss_pred cceeeeecCCCeEEEEecCcEEEEecCCCceeee---EeCCCCCcEEEEEECCCEEEEEE----cCCeEEEEEEcCceEE
Q 004094 135 QTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNE---WKSPPGYSVNVATANASQVLLAT----GGGHLVYLEIGDGILT 207 (774)
Q Consensus 135 ~Tl~~~~~~~~~~vQVT~~~i~l~~~~~~~~~~~---~~~~~~~~I~~a~~~~~~lvv~~----~~~~~~~~~~~~~~l~ 207 (774)
..|.+-.|...++|-+-+..|.+++.+..+.++. |. |......+-+.+.....++. +.|.++.|...+ +.
T Consensus 88 t~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~-~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--l~ 164 (391)
T KOG2110|consen 88 TSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTP-PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--LQ 164 (391)
T ss_pred CceEEEEEccceEEEEEcccEEEEecccceeehhhhccC-CCccceEeeccCCCCceEEecCCCCCceEEEEEccc--ce
Confidence 3477778877889989999999999887554443 42 33344444455554344444 246777777643 33
Q ss_pred EEEec-cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeec-CeeEEEEE
Q 004094 208 EVKHA-QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFE-GISYLLCA 285 (774)
Q Consensus 208 ~~~~~-~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~-~~~~L~vg 285 (774)
....+ ..+..+.||+|++ .+..+|-+..+.-.|++|++|+.+.+....-+. .|.++.-+.|. +..+|-+.
T Consensus 165 ~v~~I~aH~~~lAalafs~------~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~--~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 165 PVNTINAHKGPLAALAFSP------DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT--YPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred eeeEEEecCCceeEEEECC------CCCEEEEeccCceEEEEEEcCCccEeeeeeCCc--eeeEEEEEEECCCCCeEEEe
Confidence 32211 4678899999975 257777777745578999999988877665553 35554333343 45688899
Q ss_pred eCCCcEEEEEEecC
Q 004094 286 LGDGHLLNFLLNMK 299 (774)
Q Consensus 286 l~~G~l~~y~~~~~ 299 (774)
..++.+..|+++..
T Consensus 237 S~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 237 SNTETVHIFKLEKV 250 (391)
T ss_pred cCCCeEEEEEeccc
Confidence 99999999999754
No 50
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.51 E-value=1.3 Score=46.00 Aligned_cols=272 Identities=17% Similarity=0.220 Sum_probs=148.1
Q ss_pred eCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceE
Q 004094 375 KEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYG 454 (774)
Q Consensus 375 ~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~ 454 (774)
+.++.++.+.++..++..+ ..=+...--.+|+ +.++|++..+. .-.+++++.+...+|..+.|+.
T Consensus 24 s~~Gyk~~~~~~~~k~~~~-~~~~~~IvEmLFS--SSLvaiV~~~q--------pr~Lkv~~~Kk~~~ICe~~fpt---- 88 (391)
T KOG2110|consen 24 SKDGYKIFSCSPFEKCFSK-DTEGVSIVEMLFS--SSLVAIVSIKQ--------PRKLKVVHFKKKTTICEIFFPT---- 88 (391)
T ss_pred CCCceeEEecCchHHhhcc-cCCCeEEEEeecc--cceeEEEecCC--------CceEEEEEcccCceEEEEecCC----
Confidence 4666777777665441111 1111112223333 24455554421 1479999998888888888863
Q ss_pred EEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeec-C---ceeEeccccC--eEEEEE---
Q 004094 455 CSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETK-G---AVYSLNAFNG--KLLAAI--- 525 (774)
Q Consensus 455 ~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~-g---~v~~i~~~~~--~lv~~~--- 525 (774)
++..+++. ++-++|.- .+.||+|++++ ++++|..+.. - .+.|+..-.+ +|.+-.
T Consensus 89 -~IL~VrmN---r~RLvV~L-----------ee~IyIydI~~--MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t 151 (391)
T KOG2110|consen 89 -SILAVRMN---RKRLVVCL-----------EESIYIYDIKD--MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT 151 (391)
T ss_pred -ceEEEEEc---cceEEEEE-----------cccEEEEeccc--ceeehhhhccCCCccceEeeccCCCCceEEecCCCC
Confidence 34445554 44555554 24699999965 6666654432 2 3444443332 555432
Q ss_pred CCEEEEEEeeecCCCchhhhhhc---ccccceEEEEEEEeCCEEEEEeccccEEEEEEE-ccCCeEEEEeccCCcceeEE
Q 004094 526 NQKIQLYKWMLRDDGTRELQSEC---GHHGHILALYVQTRGDFIVVGDLMKSISLLIYK-HEEGAIEERARDYNANWMSA 601 (774)
Q Consensus 526 g~~l~v~~~~~~~~~~~~l~~~~---~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~-~~~~~l~~~a~D~~~~~v~~ 601 (774)
...|++|+.. .|.+.. .+.+...++..+..|.+|..+--..-| +=.|. ++..++.++-|-..+..+.+
T Consensus 152 ~GdV~l~d~~-------nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTV-IRVf~v~~G~kl~eFRRG~~~~~IyS 223 (391)
T KOG2110|consen 152 SGDVVLFDTI-------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTV-IRVFSVPEGQKLYEFRRGTYPVSIYS 223 (391)
T ss_pred CceEEEEEcc-------cceeeeEEEecCCceeEEEECCCCCEEEEeccCceE-EEEEEcCCccEeeeeeCCceeeEEEE
Confidence 3467887742 244332 334445556666677766554433332 22233 45678899999988888888
Q ss_pred EEEeeCCeEE-EEccCCcEEEEeeCCCCCCc-----ccc---ceeeeEEEEEcCcccceEEee--eeee-cCCCC-----
Q 004094 602 VEILDDDIYL-GAENNFNLFTVRKNSEGATD-----EER---GRLEVVGEYHLGEFVNRFRHG--SLVM-RLPDS----- 664 (774)
Q Consensus 602 ~~~l~~~~~l-~~D~~gnl~~l~~~~~~~~~-----~~~---~~L~~~~~f~lg~~v~~~~~~--~~~~-~~~~~----- 664 (774)
..|=.+..+| ++-..+.+++|+......+. ... .++...+.-+++.+|.++.-. ++.. .-|.+
T Consensus 224 L~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~ 303 (391)
T KOG2110|consen 224 LSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNI 303 (391)
T ss_pred EEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccce
Confidence 8886666666 55568999999985422110 011 111111111556666544110 0100 00111
Q ss_pred ----CCCCccEEEEEccccceEEEEe
Q 004094 665 ----DVGQIPTVIFGTVNGVIGVIAS 686 (774)
Q Consensus 665 ----~~~~~~~il~~t~~Gsi~~i~~ 686 (774)
+....+.+..+|.+|-++.+..
T Consensus 304 ~~l~~~~~~~~v~vas~dG~~y~y~l 329 (391)
T KOG2110|consen 304 CSLSSIQKIPRVLVASYDGHLYSYRL 329 (391)
T ss_pred EEeeccCCCCEEEEEEcCCeEEEEEc
Confidence 1235578899999999997653
No 51
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.49 E-value=2.2 Score=48.34 Aligned_cols=309 Identities=17% Similarity=0.241 Sum_probs=162.5
Q ss_pred EEEEEEcCCeEEEEEEcC-ceE-------EEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCee
Q 004094 186 QVLLATGGGHLVYLEIGD-GIL-------TEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLI 257 (774)
Q Consensus 186 ~lvv~~~~~~~~~~~~~~-~~l-------~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~ 257 (774)
..+|.+.++.+.++.++. +.. ..+...-...+|-+++++ ++.++++.-.++++.||+...++++
T Consensus 336 ~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS--------~d~~~~~Sga~~SikiWn~~t~kci 407 (888)
T KOG0306|consen 336 NTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVS--------SDSILLASGAGESIKIWNRDTLKCI 407 (888)
T ss_pred eeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEee--------cCceeeeecCCCcEEEEEccCccee
Confidence 345556677777766654 111 111111223566677764 2334555555789999999988776
Q ss_pred EEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCC-CCeEEEEEEeCCcceEEEecCCC
Q 004094 258 TKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGT-QPITLRTFSSKNTTHVFAASDRP 336 (774)
Q Consensus 258 ~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~-~pv~l~~~~~~~~~~v~~~~~~p 336 (774)
.+ ++++ ......++ .+..++++|+++|.|-.|.+...+ +-....-+-|. =|+.+.| ++...|-...|+.
T Consensus 408 RT--i~~~-y~l~~~Fv--pgd~~Iv~G~k~Gel~vfdlaS~~--l~Eti~AHdgaIWsi~~~p---D~~g~vT~saDkt 477 (888)
T KOG0306|consen 408 RT--ITCG-YILASKFV--PGDRYIVLGTKNGELQVFDLASAS--LVETIRAHDGAIWSISLSP---DNKGFVTGSADKT 477 (888)
T ss_pred EE--eccc-cEEEEEec--CCCceEEEeccCCceEEEEeehhh--hhhhhhccccceeeeeecC---CCCceEEecCCcE
Confidence 43 2211 00011112 356789999999999999987532 21111001110 0111111 1111111112222
Q ss_pred eEEEecCCcEEEeeecccCceeeecccCCCCCCcEEEEeCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEE
Q 004094 337 TVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAIC 416 (774)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~ 416 (774)
..++. - .+. ... | +.+=++.++. +.|.+.+.+++..+.++|+.+.++|.
T Consensus 478 VkfWd-f-~l~------------~~~-----~-------gt~~k~lsl~-----~~rtLel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 478 VKFWD-F-KLV------------VSV-----P-------GTQKKVLSLK-----HTRTLELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred EEEEe-E-EEE------------ecc-----C-------cccceeeeec-----cceEEeccccEEEEEEcCCCcEEEEE
Confidence 21111 0 000 000 0 0000111222 57888999999999999999999998
Q ss_pred EeccCCCCCceeeeEEEEEECCCce---EEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEE
Q 004094 417 SLKNQSCAEESEMHFVRLLDDQTFE---FISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFI 493 (774)
Q Consensus 417 ~~~~~~~~~~~~~~~l~l~d~~~~~---~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~ 493 (774)
-..+ .++++--.+++ .++.+.++ +.||. +.. ....++-|.+- -.+.+|-
T Consensus 527 LLdn----------TVkVyflDtlKFflsLYGHkLP----V~smD---IS~-DSklivTgSAD----------KnVKiWG 578 (888)
T KOG0306|consen 527 LLDN----------TVKVYFLDTLKFFLSLYGHKLP----VLSMD---ISP-DSKLIVTGSAD----------KNVKIWG 578 (888)
T ss_pred eccC----------eEEEEEecceeeeeeecccccc----eeEEe---ccC-CcCeEEeccCC----------CceEEec
Confidence 7764 45555444443 33444553 45554 222 24556555542 2445554
Q ss_pred EeCCeEEEEEE--EeecCceeEeccc-cCeEEEEECCEEEEEEeeecCCCchhhhhhcccccc---eEEEEEEEeCCEEE
Q 004094 494 VEDGKLQLIAE--KETKGAVYSLNAF-NGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGH---ILALYVQTRGDFIV 567 (774)
Q Consensus 494 i~~~kl~~~~~--~~~~g~v~~i~~~-~~~lv~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~---~~~~~l~~~~~~I~ 567 (774)
++=+. .|+ +.+...|.++.-+ +.++..++|+.=++-.|+- .++.-.--++++ ++...+...|.+++
T Consensus 579 LdFGD---CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg-----~kFe~iq~L~~H~~ev~cLav~~~G~~vv 650 (888)
T KOG0306|consen 579 LDFGD---CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDG-----EKFEEIQKLDGHHSEVWCLAVSPNGSFVV 650 (888)
T ss_pred cccch---hhhhhhcccCceeEEEEcccceeEEEecCcceEEeech-----hhhhhheeeccchheeeeeEEcCCCCeEE
Confidence 43111 221 2457888888877 4668899998777777742 223222223333 45556666788888
Q ss_pred EEeccccEEEEE
Q 004094 568 VGDLMKSISLLI 579 (774)
Q Consensus 568 vgD~~~Sv~~~~ 579 (774)
-+---+|+-++.
T Consensus 651 s~shD~sIRlwE 662 (888)
T KOG0306|consen 651 SSSHDKSIRLWE 662 (888)
T ss_pred eccCCceeEeee
Confidence 888889987753
No 52
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.47 E-value=0.3 Score=53.19 Aligned_cols=76 Identities=17% Similarity=0.200 Sum_probs=51.6
Q ss_pred ceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCC-------ccCceeEEee--eec----CeeEE
Q 004094 216 YEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG-------EIIPRSVLLC--AFE----GISYL 282 (774)
Q Consensus 216 ~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~-------~~~p~si~~~--~~~----~~~~L 282 (774)
.+|||++.+. --+++||+- +|.+.|+++..-.+++...+.. ...+.++.+. ..+ ....|
T Consensus 87 g~vtal~~S~-------iGFvaigy~-~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 87 GPVTALKNSD-------IGFVAIGYE-SGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp -SEEEEEE-B-------TSEEEEEET-TSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred CcEeEEecCC-------CcEEEEEec-CCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 5667776643 357899886 9999999998888887755542 1233344332 333 24789
Q ss_pred EEEeCCCcEEEEEEecC
Q 004094 283 LCALGDGHLLNFLLNMK 299 (774)
Q Consensus 283 ~vgl~~G~l~~y~~~~~ 299 (774)
+||+..|.++.|++.+.
T Consensus 159 ~vGTn~G~v~~fkIlp~ 175 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPS 175 (395)
T ss_dssp EEEETTSEEEEEEEEE-
T ss_pred EEEeCCCCEEEEEEecC
Confidence 99999999999999863
No 53
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.40 E-value=0.64 Score=46.78 Aligned_cols=199 Identities=10% Similarity=0.010 Sum_probs=114.1
Q ss_pred CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCC-ceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeee
Q 004094 399 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQT-FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYV 477 (774)
Q Consensus 399 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~-~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~ 477 (774)
.+...++|+|...-++++.+ |-+.+|..+... ...+.+-.-.-+--+++++ | .+++ ..+..|.
T Consensus 28 DsIS~l~FSP~~~~~~~A~S---------WD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~-W--sddg-skVf~g~--- 91 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGS---------WDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVC-W--SDDG-SKVFSGG--- 91 (347)
T ss_pred cchheeEeccccCceEEecc---------cCCceEEEEEecCCcccchhhhccCCCeEEEE-E--ccCC-ceEEeec---
Confidence 45667899995555554543 335677766533 2333222222233455544 2 3444 4455554
Q ss_pred CCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeE--EEEEC---CEEEEEEeeecCCCchhhhhhccccc
Q 004094 478 LPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKL--LAAIN---QKIQLYKWMLRDDGTRELQSECGHHG 552 (774)
Q Consensus 478 ~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~l--v~~~g---~~l~v~~~~~~~~~~~~l~~~~~~~~ 552 (774)
+.|.+.+|++..+.+..+. .+.+||.++.-+++.. ..+.| ++|+.|+. +. ... .+....
T Consensus 92 -------~Dk~~k~wDL~S~Q~~~v~--~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~--R~---~~p--v~t~~L 155 (347)
T KOG0647|consen 92 -------CDKQAKLWDLASGQVSQVA--AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT--RS---SNP--VATLQL 155 (347)
T ss_pred -------cCCceEEEEccCCCeeeee--ecccceeEEEEecCCCcceeEecccccceeeccc--CC---CCe--eeeeec
Confidence 4478899999988777766 4589999998887765 44555 56666442 11 111 121222
Q ss_pred ceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEE-EEeeCCeEEEEccCCcEEEEeeCCCCCC
Q 004094 553 HILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAV-EILDDDIYLGAENNFNLFTVRKNSEGAT 630 (774)
Q Consensus 553 ~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~-~~l~~~~~l~~D~~gnl~~l~~~~~~~~ 630 (774)
+--..++++.....+|+.+-++|.++.....+..+-... .+..-.+.++ .|-+.+.++.+--+|-+.+...++..+.
T Consensus 156 PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~-SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~ 233 (347)
T KOG0647|consen 156 PERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIE-SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK 233 (347)
T ss_pred cceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhc-CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc
Confidence 222344667788999999999998877644332221111 1111122222 3556677777778999999888764443
No 54
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.39 E-value=0.59 Score=49.72 Aligned_cols=104 Identities=19% Similarity=0.155 Sum_probs=64.1
Q ss_pred EECCCEEEEEEcC-CeEEEEEEcC-ceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeE
Q 004094 181 TANASQVLLATGG-GHLVYLEIGD-GILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLIT 258 (774)
Q Consensus 181 ~~~~~~lvv~~~~-~~~~~~~~~~-~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~ 258 (774)
++++..++.+... ..+.+.++.+ .++. .+..++..++|++..+ ...+++.|+- .+.|++|.+.+..++.
T Consensus 47 ~l~~~yllsaq~~rp~l~vw~i~k~~~~~--q~~v~Pg~v~al~s~n------~G~~l~ag~i-~g~lYlWelssG~LL~ 117 (476)
T KOG0646|consen 47 ALNNEYLLSAQLKRPLLHVWEILKKDQVV--QYIVLPGPVHALASSN------LGYFLLAGTI-SGNLYLWELSSGILLN 117 (476)
T ss_pred hhchhheeeecccCccccccccCchhhhh--hhcccccceeeeecCC------CceEEEeecc-cCcEEEEEeccccHHH
Confidence 3556666666543 3444545433 1222 3456788899997754 2567777777 8999999998755532
Q ss_pred EecCCCccCceeEEeeee-cCeeEEEEEeCCCcEEEEEEe
Q 004094 259 KEHLGGEIIPRSVLLCAF-EGISYLLCALGDGHLLNFLLN 297 (774)
Q Consensus 259 ~~~l~~~~~p~si~~~~~-~~~~~L~vgl~~G~l~~y~~~ 297 (774)
. +.. .=.++-.+.+ ++..+++-|..||.+++|.+-
T Consensus 118 v--~~a--HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 118 V--LSA--HYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred H--HHh--hccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 1 000 0012222233 456789999999999999874
No 55
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.26 E-value=1.8 Score=44.90 Aligned_cols=266 Identities=9% Similarity=0.176 Sum_probs=126.2
Q ss_pred cEEEEecCCCceeeeEeCCCCCcEEEEEEC--CCEEEEEE-cCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCC
Q 004094 154 SVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLAT-GGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENP 230 (774)
Q Consensus 154 ~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~-~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~ 230 (774)
.+++++.++++.+..+... ..+...+.+ +..++++. .++.+..+....+++.. ..+....+.++++.+
T Consensus 12 ~v~~~d~~t~~~~~~~~~~--~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~----- 82 (300)
T TIGR03866 12 TISVIDTATLEVTRTFPVG--QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG--TLPSGPDPELFALHP----- 82 (300)
T ss_pred EEEEEECCCCceEEEEECC--CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE--eccCCCCccEEEECC-----
Confidence 4455555443344444321 122333333 33444443 34566666655444322 122233455666643
Q ss_pred CCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeee
Q 004094 231 SYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVS 310 (774)
Q Consensus 231 ~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~ 310 (774)
....++++...++.+.+|++.+.+.+..... ...|.++.+.+ +...++++..++....+ ++..++.+. ....
T Consensus 83 -~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~--dg~~l~~~~~~~~~~~~-~d~~~~~~~--~~~~ 154 (300)
T TIGR03866 83 -NGKILYIANEDDNLVTVIDIETRKVLAEIPV--GVEPEGMAVSP--DGKIVVNTSETTNMAHF-IDTKTYEIV--DNVL 154 (300)
T ss_pred -CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--CCCcceEEECC--CCCEEEEEecCCCeEEE-EeCCCCeEE--EEEE
Confidence 1355666666588999999987655443222 22456665543 34567777766654332 343333221 1122
Q ss_pred cCCCCeEEEEEEeCCcceEEEecCC-C-eEEEecC-CcE-EEeeecccCc--eeeecccCCCCCC-cEEEE---eCCeEE
Q 004094 311 LGTQPITLRTFSSKNTTHVFAASDR-P-TVIYSSN-KKL-LYSNVNLKEV--SHMCPFNSAAFPD-SLAIA---KEGELT 380 (774)
Q Consensus 311 lG~~pv~l~~~~~~~~~~v~~~~~~-p-~~l~~~~-~~~-~~~~~~~~~i--~~~~~f~~~~~~~-~l~~~---~~~~l~ 380 (774)
.+..|..+ .+.. +...+++.++. . ..++..+ ++. .-.......+ ..+.+......++ ..+++ .++.+.
T Consensus 155 ~~~~~~~~-~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 155 VDQRPRFA-EFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred cCCCccEE-EECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 34444332 2221 23345555432 2 2233222 221 1001000000 0111110001122 23222 245666
Q ss_pred EEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC
Q 004094 381 IGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 449 (774)
Q Consensus 381 i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~ 449 (774)
+..+.+. + ..+.+..+..|..+.++|..+.+++.... ...|.++|..+++.+.++++.
T Consensus 233 v~d~~~~-~-~~~~~~~~~~~~~~~~~~~g~~l~~~~~~---------~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 233 VVDAKTY-E-VLDYLLVGQRVWQLAFTPDEKYLLTTNGV---------SNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred EEECCCC-c-EEEEEEeCCCcceEEECCCCCEEEEEcCC---------CCeEEEEECCCCcEEEEEEcc
Confidence 6655432 2 23455667788899999988866554322 247999999999988888763
No 56
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.14 E-value=0.13 Score=54.59 Aligned_cols=221 Identities=12% Similarity=0.111 Sum_probs=132.4
Q ss_pred CCcEEEEe-CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCC-CEEEEEEeccCCCCCceeeeEEEEEECCCceEEEE
Q 004094 368 PDSLAIAK-EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQS-RTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 445 (774)
Q Consensus 368 ~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~-~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~ 445 (774)
...|+.+. +..+++.-..+ +-...+..++..|..+.|+|+. +.|++..++. .|+.+|-.+.+++..
T Consensus 270 g~~fLS~sfD~~lKlwDtET--G~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~----------ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 270 GTSFLSASFDRFLKLWDTET--GQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDK----------KIRQWDIRSGKVVQE 337 (503)
T ss_pred CCeeeeeecceeeeeecccc--ceEEEEEecCCCceeeecCCCCCcEEEEecCCC----------cEEEEeccchHHHHH
Confidence 33455554 66677665554 4567888999999999999998 8888887764 788888887776543
Q ss_pred EECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeC-CeEEEEEEE-eecCceeEeccccCeEEE
Q 004094 446 YPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVED-GKLQLIAEK-ETKGAVYSLNAFNGKLLA 523 (774)
Q Consensus 446 ~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~-~kl~~~~~~-~~~g~v~~i~~~~~~lv~ 523 (774)
| +++.-++..+.|-.+++.|+- |. | -+.+.+|+..- -.++.+... .+.-|..++.+.++.+++
T Consensus 338 Y----d~hLg~i~~i~F~~~g~rFis--sS-----D----dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a 402 (503)
T KOG0282|consen 338 Y----DRHLGAILDITFVDEGRRFIS--SS-----D----DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAA 402 (503)
T ss_pred H----HhhhhheeeeEEccCCceEee--ec-----c----CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehh
Confidence 3 234445555666665555543 21 1 24788888762 235544433 234455555655555543
Q ss_pred -EECCEEEEEEeeecCCCchhhhhhcccccc---eEEEEEEE--eCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcc
Q 004094 524 -AINQKIQLYKWMLRDDGTRELQSECGHHGH---ILALYVQT--RGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNAN 597 (774)
Q Consensus 524 -~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~---~~~~~l~~--~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~ 597 (774)
+.++.+++|...++ .++.+.-.+.++ -|++.+.. .|.+++-||.-..+.++.|+... +.-.-+-. ..
T Consensus 403 Qs~dN~i~ifs~~~~----~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k--l~~~lkah-~~ 475 (503)
T KOG0282|consen 403 QSMDNYIAIFSTVPP----FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK--LVSKLKAH-DQ 475 (503)
T ss_pred hccCceEEEEecccc----cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh--hhhccccC-Cc
Confidence 56788888885432 233332222222 35555544 57799999999999988776532 11111111 12
Q ss_pred eeEEEEEee--CCeEEEEccCCcEEEE
Q 004094 598 WMSAVEILD--DDIYLGAENNFNLFTV 622 (774)
Q Consensus 598 ~v~~~~~l~--~~~~l~~D~~gnl~~l 622 (774)
-|+.+..-. .+.++.++-+|-|.+.
T Consensus 476 ~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 476 PCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred ceEEEEecCCCcceeEecccCceeEec
Confidence 233333332 2457778888887654
No 57
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.13 E-value=0.17 Score=57.40 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=77.8
Q ss_pred cEEEEEECCCEEEEEEc-CCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCC
Q 004094 176 SVNVATANASQVLLATG-GGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDL 254 (774)
Q Consensus 176 ~I~~a~~~~~~lvv~~~-~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~ 254 (774)
.|+..+.+.+.++++.+ +..+.++++.... -+..+....-|||++|.|.. .++++-|+- ||.++||++++.
T Consensus 371 DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~--CL~~F~HndfVTcVaFnPvD-----DryFiSGSL-D~KvRiWsI~d~ 442 (712)
T KOG0283|consen 371 DILDLSWSKNNFLLSSSMDKTVRLWHPGRKE--CLKVFSHNDFVTCVAFNPVD-----DRYFISGSL-DGKVRLWSISDK 442 (712)
T ss_pred hheecccccCCeeEeccccccEEeecCCCcc--eeeEEecCCeeEEEEecccC-----CCcEeeccc-ccceEEeecCcC
Confidence 47788866555555544 6677777765322 22345666779999998875 467777777 999999999998
Q ss_pred CeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEec
Q 004094 255 NLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 255 ~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 298 (774)
+++.-..+. -+..++++.+ +..+.+||+-+|....|....
T Consensus 443 ~Vv~W~Dl~--~lITAvcy~P--dGk~avIGt~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 443 KVVDWNDLR--DLITAVCYSP--DGKGAVIGTFNGYCRFYDTEG 482 (712)
T ss_pred eeEeehhhh--hhheeEEecc--CCceEEEEEeccEEEEEEccC
Confidence 887543443 2445566554 357789999999999998653
No 58
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.13 E-value=1.5 Score=47.10 Aligned_cols=190 Identities=13% Similarity=0.084 Sum_probs=116.9
Q ss_pred ccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCC-ceEEEEEEEEEcCCCceEEEEEeeeeCC
Q 004094 401 PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF-EYGCSILSCSFSDDSNVYYCVGTAYVLP 479 (774)
Q Consensus 401 p~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~-E~~~si~~~~~~~~~~~~i~VGT~~~~~ 479 (774)
.+.+-|+|..++.++.+++. ..+++.|..+-.+ .+++..+ ..+-|.... . ...+++|..+
T Consensus 113 v~~~~f~~~d~t~l~s~sDd---------~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~---~-~~~hivvtGs---- 173 (487)
T KOG0310|consen 113 VHVTKFSPQDNTMLVSGSDD---------KVVKYWDLSTAYV--QAELSGHTDYVRCGDIS---P-ANDHIVVTGS---- 173 (487)
T ss_pred eeEEEecccCCeEEEecCCC---------ceEEEEEcCCcEE--EEEecCCcceeEeeccc---c-CCCeEEEecC----
Confidence 45567889999988888763 3677777766554 5555444 345554432 2 2344444333
Q ss_pred CCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccC-e-EEEEECCEEEEEEeeecCCCchhhhhhcccccceEEE
Q 004094 480 EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNG-K-LLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILAL 557 (774)
Q Consensus 480 ~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~-~-lv~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~ 557 (774)
.-|.|.+|++.... ..+.+....-||-.++.+.+ . |+.|.|+.+.+|++. .|.+.+.....+. =.++
T Consensus 174 -----YDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~---~G~qll~~~~~H~--KtVT 242 (487)
T KOG0310|consen 174 -----YDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLT---TGGQLLTSMFNHN--KTVT 242 (487)
T ss_pred -----CCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEec---CCceehhhhhccc--ceEE
Confidence 34899999987443 56677788899999999843 5 566778999998863 2433443333222 2345
Q ss_pred EEEE--eCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCC-eEEEEccCCcEEEEee
Q 004094 558 YVQT--RGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD-IYLGAENNFNLFTVRK 624 (774)
Q Consensus 558 ~l~~--~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~-~~l~~D~~gnl~~l~~ 624 (774)
||.. .+.+++-|-+-.-|.++. ..+.++ +.+=..|-.+.++..-++| +++++=.+|-+.+-+.
T Consensus 243 cL~l~s~~~rLlS~sLD~~VKVfd--~t~~Kv--v~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 243 CLRLASDSTRLLSGSLDRHVKVFD--TTNYKV--VHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred EEEeecCCceEeecccccceEEEE--ccceEE--EEeeecccceeeEEecCCCceEEEecccceeeeehh
Confidence 5554 446888888888887754 334333 3333345566666665555 4455555777666644
No 59
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.12 E-value=2.3 Score=45.07 Aligned_cols=211 Identities=15% Similarity=0.129 Sum_probs=113.2
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCce-E
Q 004094 376 EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEY-G 454 (774)
Q Consensus 376 ~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~-~ 454 (774)
+..+++...+... -+.-.++..+.++.+.-||....++-+..+ ++..|-|-.+...+..+.-+..+. .
T Consensus 282 d~~i~vws~~~~s-~~~~~~~h~~~V~~ls~h~tgeYllsAs~d----------~~w~Fsd~~~g~~lt~vs~~~s~v~~ 350 (506)
T KOG0289|consen 282 DEIIRVWSVPLSS-EPTSSRPHEEPVTGLSLHPTGEYLLSASND----------GTWAFSDISSGSQLTVVSDETSDVEY 350 (506)
T ss_pred cceEEeecccccc-CccccccccccceeeeeccCCcEEEEecCC----------ceEEEEEccCCcEEEEEeecccccee
Confidence 4556666665543 223334445555666667766655444433 366666766666665554433332 2
Q ss_pred EEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEe-ecCceeEeccc-cCe-EEEEECCE-EE
Q 004094 455 CSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE-TKGAVYSLNAF-NGK-LLAAINQK-IQ 530 (774)
Q Consensus 455 ~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~-~~g~v~~i~~~-~~~-lv~~~g~~-l~ 530 (774)
+|+. |..+ =++.||+. ..|-+.+|++++.. -+..+. +.|||.+|.-- ||| |+.+.... |+
T Consensus 351 ts~~---fHpD---gLifgtgt--------~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~ 414 (506)
T KOG0289|consen 351 TSAA---FHPD---GLIFGTGT--------PDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVK 414 (506)
T ss_pred EEee---EcCC---ceEEeccC--------CCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEE
Confidence 3332 3322 24445543 45899999998654 233332 58899999854 787 66677765 88
Q ss_pred EEEeeecCCCchhhhhhcc--cccc--eEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEE--eccCCcceeEEEEE
Q 004094 531 LYKWMLRDDGTRELQSECG--HHGH--ILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEER--ARDYNANWMSAVEI 604 (774)
Q Consensus 531 v~~~~~~~~~~~~l~~~~~--~~~~--~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~--a~D~~~~~v~~~~~ 604 (774)
+|++. |+...-. .+.. ...++++-.|.++.++ -..+.+|.|+....+-.++ -.|.. -..+.+.|
T Consensus 415 lwDLR-------Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~--g~~l~Vy~~~k~~k~W~~~~~~~~~s-g~st~v~F 484 (506)
T KOG0289|consen 415 LWDLR-------KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA--GSDLQVYICKKKTKSWTEIKELADHS-GLSTGVRF 484 (506)
T ss_pred EEEeh-------hhcccceeeccccccceeEEEcCCCCeEEee--cceeEEEEEecccccceeeehhhhcc-cccceeee
Confidence 87752 2222111 1111 2345556667888887 6778888887543322222 12222 12344555
Q ss_pred eeCCeEEE-EccCCcEEEEe
Q 004094 605 LDDDIYLG-AENNFNLFTVR 623 (774)
Q Consensus 605 l~~~~~l~-~D~~gnl~~l~ 623 (774)
=+...+++ +-.+.++.++.
T Consensus 485 g~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 485 GEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred cccceEEeeccchhheEEee
Confidence 44445554 33355554443
No 60
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.91 E-value=0.49 Score=53.43 Aligned_cols=141 Identities=20% Similarity=0.234 Sum_probs=85.0
Q ss_pred CCcEEEEeCCeEEEEEEcCCCCeEEEEEeCC--CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEE
Q 004094 368 PDSLAIAKEGELTIGTIDDIQKLHIRSIPLG--EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 445 (774)
Q Consensus 368 ~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~--~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~ 445 (774)
|.++.|++.+.=+-+++........-+|-.| ..+..+.|||..+..+-.+++. .+|+.|..++..+.-
T Consensus 503 P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~----------tVRlWDv~~G~~VRi 572 (707)
T KOG0263|consen 503 PRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDR----------TVRLWDVSTGNSVRI 572 (707)
T ss_pred CCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCc----------eEEEEEcCCCcEEEE
Confidence 5577777643333333333222233344343 3567799999888766665554 788888877766655
Q ss_pred EECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEEE
Q 004094 446 YPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAA 524 (774)
Q Consensus 446 ~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~ 524 (774)
|.= ..-.+++++ +.. -..|++-|. .-|+|.+|++.++++-.... .+.|.|+++.-- +|.++++
T Consensus 573 F~G-H~~~V~al~---~Sp-~Gr~LaSg~----------ed~~I~iWDl~~~~~v~~l~-~Ht~ti~SlsFS~dg~vLas 636 (707)
T KOG0263|consen 573 FTG-HKGPVTALA---FSP-CGRYLASGD----------EDGLIKIWDLANGSLVKQLK-GHTGTIYSLSFSRDGNVLAS 636 (707)
T ss_pred ecC-CCCceEEEE---EcC-CCceEeecc----------cCCcEEEEEcCCCcchhhhh-cccCceeEEEEecCCCEEEe
Confidence 422 222344444 332 356777664 34999999999866443322 229999999854 5665544
Q ss_pred --ECCEEEEEEe
Q 004094 525 --INQKIQLYKW 534 (774)
Q Consensus 525 --~g~~l~v~~~ 534 (774)
.++.|.+|++
T Consensus 637 gg~DnsV~lWD~ 648 (707)
T KOG0263|consen 637 GGADNSVRLWDL 648 (707)
T ss_pred cCCCCeEEEEEc
Confidence 4478888765
No 61
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.84 E-value=2 Score=41.86 Aligned_cols=257 Identities=14% Similarity=0.181 Sum_probs=128.5
Q ss_pred cceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecC
Q 004094 233 SQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLG 312 (774)
Q Consensus 233 ~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG 312 (774)
.++++ .+-.+.++++|+.-...++.+..=- ..-..++.+. .+...+-.+-+|-.+..|.+. +|... ++++
T Consensus 29 GnY~l-tcGsdrtvrLWNp~rg~liktYsgh-G~EVlD~~~s--~Dnskf~s~GgDk~v~vwDV~--TGkv~----Rr~r 98 (307)
T KOG0316|consen 29 GNYCL-TCGSDRTVRLWNPLRGALIKTYSGH-GHEVLDAALS--SDNSKFASCGGDKAVQVWDVN--TGKVD----RRFR 98 (307)
T ss_pred CCEEE-EcCCCceEEeecccccceeeeecCC-Cceeeecccc--ccccccccCCCCceEEEEEcc--cCeee----eecc
Confidence 45654 3444889999996554444321110 0001111111 123334444455555555444 45432 1232
Q ss_pred CCCeEEEEEEeCCcceEEEecC--CCeEEEecCCcEEEeeecc--cCceeeecccCCCCCCcEEE--EeCCeEEEEEEcC
Q 004094 313 TQPITLRTFSSKNTTHVFAASD--RPTVIYSSNKKLLYSNVNL--KEVSHMCPFNSAAFPDSLAI--AKEGELTIGTIDD 386 (774)
Q Consensus 313 ~~pv~l~~~~~~~~~~v~~~~~--~p~~l~~~~~~~~~~~~~~--~~i~~~~~f~~~~~~~~l~~--~~~~~l~i~~l~~ 386 (774)
..-.++...+.+..+.|++.|. +..-++..+.+ .+.|++. ..-.++..+. ..+..++ ..++.++-..+-.
T Consensus 99 gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~-s~ePiQildea~D~V~Si~---v~~heIvaGS~DGtvRtydiR~ 174 (307)
T KOG0316|consen 99 GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR-SFEPIQILDEAKDGVSSID---VAEHEIVAGSVDGTVRTYDIRK 174 (307)
T ss_pred cccceeeEEEecCcceEEEeccccceeEEEEcccC-CCCccchhhhhcCceeEEE---ecccEEEeeccCCcEEEEEeec
Confidence 2222333334446778888774 33334433322 1223331 1111111110 1112222 2244444443322
Q ss_pred CCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCC-ceEEEEEEEEEcCC
Q 004094 387 IQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF-EYGCSILSCSFSDD 465 (774)
Q Consensus 387 ~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~-E~~~si~~~~~~~~ 465 (774)
.+ .-+=-++...+.+.++++.++.++.+.. +.++|+|..|++.+..|.=-.| |.=+..+ +. +
T Consensus 175 G~---l~sDy~g~pit~vs~s~d~nc~La~~l~----------stlrLlDk~tGklL~sYkGhkn~eykldc~---l~-q 237 (307)
T KOG0316|consen 175 GT---LSSDYFGHPITSVSFSKDGNCSLASSLD----------STLRLLDKETGKLLKSYKGHKNMEYKLDCC---LN-Q 237 (307)
T ss_pred ce---eehhhcCCcceeEEecCCCCEEEEeecc----------ceeeecccchhHHHHHhcccccceeeeeee---ec-c
Confidence 11 1111345667788999999998888865 5899999999999887754333 3222111 22 2
Q ss_pred CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeec-Cc-eeEeccc--cCeEEEEECCEEEEE
Q 004094 466 SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETK-GA-VYSLNAF--NGKLLAAINQKIQLY 532 (774)
Q Consensus 466 ~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~-g~-v~~i~~~--~~~lv~~~g~~l~v~ 532 (774)
...+++-|. ..|.+|+|++.+.++ +.+..+. .+ |+++... ...++.|.|+....+
T Consensus 238 sdthV~sgS----------EDG~Vy~wdLvd~~~--~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~ 296 (307)
T KOG0316|consen 238 SDTHVFSGS----------EDGKVYFWDLVDETQ--ISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFW 296 (307)
T ss_pred cceeEEecc----------CCceEEEEEecccee--eeeeccCCceeEEeeecccCccceeEecCCceece
Confidence 334444343 349999999987543 3333443 34 5666655 456888888877653
No 62
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=95.77 E-value=3 Score=43.47 Aligned_cols=309 Identities=15% Similarity=0.146 Sum_probs=155.7
Q ss_pred CCCcEEEEEECCC--EEEEEEcCCeEEEEEEcCc-eEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEE
Q 004094 173 PGYSVNVATANAS--QVLLATGGGHLVYLEIGDG-ILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249 (774)
Q Consensus 173 ~~~~I~~a~~~~~--~lvv~~~~~~~~~~~~~~~-~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~ 249 (774)
.+..|.++...+. .++-...+..+.+..++.. .+. .-+...+.|.|++.+|- ...++-|+- +|+|.+|
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~--t~KgH~~WVlcvawsPD------gk~iASG~~-dg~I~lw 184 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF--TCKGHKNWVLCVAWSPD------GKKIASGSK-DGSIRLW 184 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce--eecCCccEEEEEEECCC------cchhhcccc-CCeEEEe
Confidence 3456777776643 3333323345556554431 111 12356789999999762 567888877 9999999
Q ss_pred ECCCCCeeEEecCCCcc-CceeEEeeeec---CeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCC
Q 004094 250 SLPDLNLITKEHLGGEI-IPRSVLLCAFE---GISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKN 325 (774)
Q Consensus 250 ~l~~~~~~~~~~l~~~~-~p~si~~~~~~---~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~ 325 (774)
+....+.+.. .|+.-. -..+++..+++ +--+|.-+.+||.+.++....... .+...--+.||. .++- |
T Consensus 185 dpktg~~~g~-~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~----~~~lsgHT~~VT--Cvrw-G 256 (480)
T KOG0271|consen 185 DPKTGQQIGR-ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC----VRTLSGHTASVT--CVRW-G 256 (480)
T ss_pred cCCCCCcccc-cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE----EEEeccCccceE--EEEE-c
Confidence 9765444321 222110 11122222221 122566788899999988664210 011111123332 2222 3
Q ss_pred cceEEEecCC--CeEEEec-CCcE-----------EEeeecccCceeeecccCC-CC----------------------C
Q 004094 326 TTHVFAASDR--PTVIYSS-NKKL-----------LYSNVNLKEVSHMCPFNSA-AF----------------------P 368 (774)
Q Consensus 326 ~~~v~~~~~~--p~~l~~~-~~~~-----------~~~~~~~~~i~~~~~f~~~-~~----------------------~ 368 (774)
+.+++..|++ ..-++.. +|++ .-..++.+-+....+|+.. .+ +
T Consensus 257 G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~ 336 (480)
T KOG0271|consen 257 GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG 336 (480)
T ss_pred CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence 3455555533 2223322 1221 1111111111111223211 11 1
Q ss_pred CcEEEEe-CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEE
Q 004094 369 DSLAIAK-EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP 447 (774)
Q Consensus 369 ~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~ 447 (774)
+.++-.+ +..|.+.+-....+...|.-.=..-+..+.|+|+.+.++-++.++ +++|.|..+++-+.++.
T Consensus 337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk----------SVkLW~g~tGk~lasfR 406 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK----------SVKLWDGRTGKFLASFR 406 (480)
T ss_pred ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc----------ceeeeeCCCcchhhhhh
Confidence 2355443 444444443222222222212223467899999999888888775 89999999988777654
Q ss_pred CCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEee---cCceeEeccc-cCeEEE
Q 004094 448 LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKET---KGAVYSLNAF-NGKLLA 523 (774)
Q Consensus 448 ~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~---~g~v~~i~~~-~~~lv~ 523 (774)
= ++-.+..+.-.. ..-++|..+. -..|.+|++..+|++. +. ...|+++.-- +|..++
T Consensus 407 G----Hv~~VYqvawsa--DsRLlVS~Sk---------DsTLKvw~V~tkKl~~----DLpGh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 407 G----HVAAVYQVAWSA--DSRLLVSGSK---------DSTLKVWDVRTKKLKQ----DLPGHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred h----ccceeEEEEecc--CccEEEEcCC---------CceEEEEEeeeeeecc----cCCCCCceEEEEEecCCCceee
Confidence 1 112222222222 2234444432 2589999998777653 33 4567877754 566666
Q ss_pred EECC
Q 004094 524 AINQ 527 (774)
Q Consensus 524 ~~g~ 527 (774)
+-|+
T Consensus 468 sggk 471 (480)
T KOG0271|consen 468 SGGK 471 (480)
T ss_pred cCCC
Confidence 6664
No 63
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=95.71 E-value=2.6 Score=42.18 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=81.1
Q ss_pred cCcEEEEecCCCceeeeEeCCCCCcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCC
Q 004094 152 SGSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGEN 229 (774)
Q Consensus 152 ~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~ 229 (774)
...+|+-|..+++..+.+.. ....+...+++ +.+++-...++.+..+.+..+...++..-.-...|+|+.|.|..
T Consensus 84 D~~lrlWDl~~g~~t~~f~G-H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~-- 160 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVG-HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE-- 160 (315)
T ss_pred cceEEEEEecCCcEEEEEEe-cCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC--
Confidence 34567888777655555543 23456777765 33666555566776665432222222211116789999998743
Q ss_pred CCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecC
Q 004094 230 PSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMK 299 (774)
Q Consensus 230 ~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~ 299 (774)
.+.+++-+.| |+++++|++.+++..... ++.......+.+.+ +...+.-|-+||+.+-+.++..
T Consensus 161 --~~p~Ivs~s~-DktvKvWnl~~~~l~~~~-~gh~~~v~t~~vSp--DGslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 161 --SNPIIVSASW-DKTVKVWNLRNCQLRTTF-IGHSGYVNTVTVSP--DGSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred --CCcEEEEccC-CceEEEEccCCcchhhcc-ccccccEEEEEECC--CCCEEecCCCCceEEEEEccCC
Confidence 2456666778 999999999987763221 11001111222221 3344555888999999888763
No 64
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=95.70 E-value=0.45 Score=51.88 Aligned_cols=139 Identities=17% Similarity=0.153 Sum_probs=79.6
Q ss_pred EEEEEEcCCeEEEEEEcCceEEEEEeccCC-ceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCC
Q 004094 186 QVLLATGGGHLVYLEIGDGILTEVKHAQLE-YEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG 264 (774)
Q Consensus 186 ~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~-~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~ 264 (774)
..+++ ++.++.-|.++.|++- .++..+ .++.|+.+.+. ...+++|+- +|.++.|.-.+-+.+.+...+.
T Consensus 148 ly~~g-sg~evYRlNLEqGrfL--~P~~~~~~~lN~v~in~~------hgLla~Gt~-~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 148 LYLVG-SGSEVYRLNLEQGRFL--NPFETDSGELNVVSINEE------HGLLACGTE-DGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred EEEee-cCcceEEEEccccccc--cccccccccceeeeecCc------cceEEeccc-CceEEEecchhhhhheeeeccc
Confidence 44444 4778888888777652 223333 56777777653 456788887 9999999876544433211111
Q ss_pred --ccCc-----eeEEeeeec-CeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCC
Q 004094 265 --EIIP-----RSVLLCAFE-GISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRP 336 (774)
Q Consensus 265 --~~~p-----~si~~~~~~-~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p 336 (774)
+..| .++.-+.+. +..++-||+++|.++.|.+.....- ..+.+.+.-|+....+.-.+....+++.+.-
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl---~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~ 294 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL---LVKDHGYELPIKKLDWQDTDQQNKVVSMDKR 294 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce---eecccCCccceeeecccccCCCceEEecchH
Confidence 0111 122223343 3678999999999999998764321 1234566667655444222333444444444
Q ss_pred e
Q 004094 337 T 337 (774)
Q Consensus 337 ~ 337 (774)
.
T Consensus 295 ~ 295 (703)
T KOG2321|consen 295 I 295 (703)
T ss_pred H
Confidence 3
No 65
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=95.69 E-value=0.38 Score=47.01 Aligned_cols=130 Identities=15% Similarity=0.223 Sum_probs=91.1
Q ss_pred eCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceE
Q 004094 375 KEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYG 454 (774)
Q Consensus 375 ~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~ 454 (774)
..+.+++...-+ ..-++++.++..|+.+-++++.+.+.++. .+.|+|.|++++..+.+|+++-+-.
T Consensus 163 dd~tVRLWD~rT--gt~v~sL~~~s~VtSlEvs~dG~ilTia~-----------gssV~Fwdaksf~~lKs~k~P~nV~- 228 (334)
T KOG0278|consen 163 DDKTVRLWDHRT--GTEVQSLEFNSPVTSLEVSQDGRILTIAY-----------GSSVKFWDAKSFGLLKSYKMPCNVE- 228 (334)
T ss_pred cCCceEEEEecc--CcEEEEEecCCCCcceeeccCCCEEEEec-----------CceeEEeccccccceeeccCccccc-
Confidence 356666655543 34678889999999999999887665554 3589999999999999998875533
Q ss_pred EEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC-eEEEEEEEeecCceeEeccccCeEEEEEC---CEEE
Q 004094 455 CSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG-KLQLIAEKETKGAVYSLNAFNGKLLAAIN---QKIQ 530 (774)
Q Consensus 455 ~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~-kl~~~~~~~~~g~v~~i~~~~~~lv~~~g---~~l~ 530 (774)
+..|.. +++++|-|- |+ +.+|.|+...+ .+.. +.+...|||.|+.--.+..++|.| .+|+
T Consensus 229 ----SASL~P-~k~~fVaGg------ed----~~~~kfDy~TgeEi~~-~nkgh~gpVhcVrFSPdGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 229 ----SASLHP-KKEFFVAGG------ED----FKVYKFDYNTGEEIGS-YNKGHFGPVHCVRFSPDGELYASGSEDGTIR 292 (334)
T ss_pred ----cccccC-CCceEEecC------cc----eEEEEEeccCCceeee-cccCCCCceEEEEECCCCceeeccCCCceEE
Confidence 333443 356666664 22 67888877643 3332 456789999999977677677776 4788
Q ss_pred EEEe
Q 004094 531 LYKW 534 (774)
Q Consensus 531 v~~~ 534 (774)
+|..
T Consensus 293 lWQt 296 (334)
T KOG0278|consen 293 LWQT 296 (334)
T ss_pred EEEe
Confidence 8664
No 66
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=95.65 E-value=3.8 Score=43.71 Aligned_cols=262 Identities=12% Similarity=0.085 Sum_probs=131.2
Q ss_pred CcEEEEecCCCceeeeEeCCCCCcEEEEEECCCEEEEEEc---------C-CeEEEEEEcCceEEEEEeccCCce-----
Q 004094 153 GSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATG---------G-GHLVYLEIGDGILTEVKHAQLEYE----- 217 (774)
Q Consensus 153 ~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~~~lvv~~~---------~-~~~~~~~~~~~~l~~~~~~~l~~~----- 217 (774)
+.|.++|.++.+.+..+.....-.. ..+-++..+.++.. + ..+..+.. ..+..+..+++...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~--~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDP--QTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-eECCCCCEEEEEeccccccccCCCCCEEEEEEC--ccCcEEeEEccCCCchhhc
Confidence 6677888776555555543111111 13334556666655 2 23333333 23333333343222
Q ss_pred ---eEEEEeCCCCCCCCCcceEEEEEec-CCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEE
Q 004094 218 ---ISCLDINPIGENPSYSQIAAVGMWT-DISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLN 293 (774)
Q Consensus 218 ---is~l~~~~~~~~~~~~~~~~vg~~~-~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~ 293 (774)
...+++++ ...+++|..+. ++++.++++...+.+..-..+. ...++..-++....+ ..||.+..
T Consensus 104 ~~~~~~~~ls~------dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~----~~~vy~t~e~~~~~~--~~Dg~~~~ 171 (352)
T TIGR02658 104 GTYPWMTSLTP------DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD----CYHIFPTANDTFFMH--CRDGSLAK 171 (352)
T ss_pred cCccceEEECC------CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC----CcEEEEecCCccEEE--eecCceEE
Confidence 12344543 25778888876 7899999998877766544432 122222222333344 46999999
Q ss_pred EEEecCCCccccceee--------ecCCCCeEEEEEEeCCcceEEEecCCCeEEEe-cCCcEEE-eeec---ccCc----
Q 004094 294 FLLNMKTGELTDRKKV--------SLGTQPITLRTFSSKNTTHVFAASDRPTVIYS-SNKKLLY-SNVN---LKEV---- 356 (774)
Q Consensus 294 y~~~~~~~~l~~~~~~--------~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l~~-~~~~~~~-~~~~---~~~i---- 356 (774)
+.++.. |+.. .+.. .++..| .+ ...++..+|+..+....+.. ......+ .++. ....
T Consensus 172 v~~d~~-g~~~-~~~~~vf~~~~~~v~~rP-~~---~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~w 245 (352)
T TIGR02658 172 VGYGTK-GNPK-IKPTEVFHPEDEYLINHP-AY---SNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGW 245 (352)
T ss_pred EEecCC-CceE-EeeeeeecCCccccccCC-ce---EcCCCcEEEEecCCeEEEEecCCCcceecceeeecccccccccc
Confidence 988764 3321 1111 223555 11 11133556666553322221 1111100 0000 0000
Q ss_pred --ee--eecccCCCCCCcEEE--EeC--------CeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCC
Q 004094 357 --SH--MCPFNSAAFPDSLAI--AKE--------GELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQS 422 (774)
Q Consensus 357 --~~--~~~f~~~~~~~~l~~--~~~--------~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~ 422 (774)
.. ...++. +..-+| ..+ +.=.+.-++....=.+++|+++..|..++++++.+-.+.++.+.
T Consensus 246 rP~g~q~ia~~~---dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~-- 320 (352)
T TIGR02658 246 RPGGWQQVAYHR---ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTG-- 320 (352)
T ss_pred CCCcceeEEEcC---CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCC--
Confidence 00 011111 112222 211 11245556655566789999999999999999988444444331
Q ss_pred CCCceeeeEEEEEECCCceEEEEE
Q 004094 423 CAEESEMHFVRLLDDQTFEFISTY 446 (774)
Q Consensus 423 ~~~~~~~~~l~l~d~~~~~~i~~~ 446 (774)
...|.++|..+.+.+.++
T Consensus 321 ------s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 321 ------DKTLYIFDAETGKELSSV 338 (352)
T ss_pred ------CCcEEEEECcCCeEEeee
Confidence 236889999998888776
No 67
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.61 E-value=3.1 Score=42.99 Aligned_cols=221 Identities=17% Similarity=0.107 Sum_probs=115.4
Q ss_pred CeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCe-EEEEEEeCCcceEEEecCCCeEEEecC---CcE-E----E
Q 004094 278 GISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPI-TLRTFSSKNTTHVFAASDRPTVIYSSN---KKL-L----Y 348 (774)
Q Consensus 278 ~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv-~l~~~~~~~~~~v~~~~~~p~~l~~~~---~~~-~----~ 348 (774)
.+..|++|+.+| |+.|+.....+ . . ......++ ++..++ ..+.+++.+++-..++.-+ ... . .
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~-~--~--~i~~~~~I~ql~vl~--~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSK-P--T--RILKLSSITQLSVLP--ELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcc-c--e--eEeecceEEEEEEec--ccCEEEEEcCCccEEEEchhhccccccccccc
Confidence 457899999999 88888822111 1 1 11112222 233222 3456777777555544311 000 0 0
Q ss_pred -------eeec-ccCceeeecccCCCCC-CcEEEEeCCeEEEEEEcCC-CC--eEEEEEeCCCcccEEEEecCCCEEEEE
Q 004094 349 -------SNVN-LKEVSHMCPFNSAAFP-DSLAIAKEGELTIGTIDDI-QK--LHIRSIPLGEHPRRICHQEQSRTFAIC 416 (774)
Q Consensus 349 -------~~~~-~~~i~~~~~f~~~~~~-~~l~~~~~~~l~i~~l~~~-~~--~~~~~i~l~~tp~~i~y~~~~~~~~v~ 416 (774)
..+. .+.+..++.- ..... ..++++.+..+.+.+.... .. -..+.+.+.++|+.+.+. .+.++|+
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~-~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVN-GGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred cccccccccccccCCeeEEeec-cccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEE
Confidence 0111 1233344400 11111 2466677889999998774 33 488999999999999999 4667777
Q ss_pred EeccCCCCCceeeeEEEEEECCCceEEEEEECCC--------CceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceE
Q 004094 417 SLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDT--------FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGR 488 (774)
Q Consensus 417 ~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~--------~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gr 488 (774)
+.+ ...++|..+.....-+.... .+....+....+.+ .+++++-... |-
T Consensus 155 ~~~-----------~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~Ll~~~~~----------g~ 211 (275)
T PF00780_consen 155 TSK-----------GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD--NEFLLCYDNI----------GV 211 (275)
T ss_pred eCC-----------ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC--ceEEEEecce----------EE
Confidence 644 35556655443322222111 12222233333332 3555532211 11
Q ss_pred EEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEECCEEEEEEee
Q 004094 489 ILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWM 535 (774)
Q Consensus 489 l~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g~~l~v~~~~ 535 (774)
+ .+. .++..--.....++.+.+++....+|++...+.|.|+...
T Consensus 212 f--v~~-~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~~~iEV~~~~ 255 (275)
T PF00780_consen 212 F--VNK-NGEPSRKSTIQWSSAPQSVAYSSPYLIAFSSNSIEVRSLE 255 (275)
T ss_pred E--EcC-CCCcCcccEEEcCCchhEEEEECCEEEEECCCEEEEEECc
Confidence 0 011 1211112334557788888888889888888889998864
No 68
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=95.56 E-value=4 Score=43.34 Aligned_cols=142 Identities=17% Similarity=0.192 Sum_probs=85.9
Q ss_pred CCcEEEEeC-CeEEEEEEcCCCCeEEEEEe-CCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEE
Q 004094 368 PDSLAIAKE-GELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 445 (774)
Q Consensus 368 ~~~l~~~~~-~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~ 445 (774)
.+.|+-+++ +..-|..+.+...+..-+-. -+-..+..++||+...|+..+.+ +.++++|-++...+.
T Consensus 315 geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d----------~~vkiwdlks~~~~a- 383 (506)
T KOG0289|consen 315 GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPD----------GVVKIWDLKSQTNVA- 383 (506)
T ss_pred CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCC----------ceEEEEEcCCccccc-
Confidence 356666664 44455555554444333332 12235678999999888877654 589999988766544
Q ss_pred EECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe-EEEEEEEeecCceeEeccc-cCeEEE
Q 004094 446 YPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK-LQLIAEKETKGAVYSLNAF-NGKLLA 523 (774)
Q Consensus 446 ~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~k-l~~~~~~~~~g~v~~i~~~-~~~lv~ 523 (774)
.|+.++-. +..+.|.. +.-|+++++. .|.+.+|++.+.+ ++.+...+ +.+|-+++-- .|.+++
T Consensus 384 -~Fpght~~--vk~i~FsE-NGY~Lat~ad----------d~~V~lwDLRKl~n~kt~~l~~-~~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 384 -KFPGHTGP--VKAISFSE-NGYWLATAAD----------DGSVKLWDLRKLKNFKTIQLDE-KKEVNSLSFDQSGTYLG 448 (506)
T ss_pred -cCCCCCCc--eeEEEecc-CceEEEEEec----------CCeEEEEEehhhcccceeeccc-cccceeEEEcCCCCeEE
Confidence 55554432 45566764 4556777662 3679999986433 22222222 2256666633 455666
Q ss_pred EECCEEEEEEee
Q 004094 524 AINQKIQLYKWM 535 (774)
Q Consensus 524 ~~g~~l~v~~~~ 535 (774)
+.|+.|+||.+.
T Consensus 449 ~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 449 IAGSDLQVYICK 460 (506)
T ss_pred eecceeEEEEEe
Confidence 669999999875
No 69
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.50 E-value=3.4 Score=42.10 Aligned_cols=195 Identities=12% Similarity=0.118 Sum_probs=111.7
Q ss_pred eEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecC
Q 004094 430 HFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKG 509 (774)
Q Consensus 430 ~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g 509 (774)
+.|.+.+.+.|+.+.++.--.+- ++.+.+- ..++--+.||+. +.+..|++.+++--.+.......
T Consensus 107 G~i~iw~~~~W~~~~slK~H~~~-Vt~lsiH---PS~KLALsVg~D-----------~~lr~WNLV~Gr~a~v~~L~~~a 171 (362)
T KOG0294|consen 107 GHIIIWRVGSWELLKSLKAHKGQ-VTDLSIH---PSGKLALSVGGD-----------QVLRTWNLVRGRVAFVLNLKNKA 171 (362)
T ss_pred CcEEEEEcCCeEEeeeecccccc-cceeEec---CCCceEEEEcCC-----------ceeeeehhhcCccceeeccCCcc
Confidence 47888999999999887655544 5555432 223555666652 46667777655433222211111
Q ss_pred ceeEeccccCeEEEEECCEEEEEEeeecCCCchhhhhhcccccceEEEEEEE-eCCEEEEEeccccEEEEEEEccCCeEE
Q 004094 510 AVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQT-RGDFIVVGDLMKSISLLIYKHEEGAIE 588 (774)
Q Consensus 510 ~v~~i~~~~~~lv~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~-~~~~I~vgD~~~Sv~~~~~~~~~~~l~ 588 (774)
....-.+-+++.++..-++|-+|..+. -++.+..... .-+.++.+ .+++++||---.-+.+ ++.++. ..
T Consensus 172 t~v~w~~~Gd~F~v~~~~~i~i~q~d~-----A~v~~~i~~~--~r~l~~~~l~~~~L~vG~d~~~i~~--~D~ds~-~~ 241 (362)
T KOG0294|consen 172 TLVSWSPQGDHFVVSGRNKIDIYQLDN-----ASVFREIENP--KRILCATFLDGSELLVGGDNEWISL--KDTDSD-TP 241 (362)
T ss_pred eeeEEcCCCCEEEEEeccEEEEEeccc-----HhHhhhhhcc--ccceeeeecCCceEEEecCCceEEE--eccCCC-cc
Confidence 111111235678888899999998642 2333332222 11233333 4667777765555543 454432 11
Q ss_pred EEeccCCcceeEEEEEeeC--CeE-EEEccCCcEEEEeeCCCCCCccccceeeeEEEEEcCcccceEEe
Q 004094 589 ERARDYNANWMSAVEILDD--DIY-LGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRH 654 (774)
Q Consensus 589 ~~a~D~~~~~v~~~~~l~~--~~~-l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~ 654 (774)
+.--+.++..|.++.++.+ ..+ +.+-++|-|.+...+-+.. .+-...+++++|.++|++.-
T Consensus 242 ~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k-----~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 242 LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK-----KRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred ceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccccc-----CCcceeEEeecCCccceeee
Confidence 1122345666777765543 234 4567899999999875432 24456799999999999874
No 70
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=95.41 E-value=4 Score=42.41 Aligned_cols=231 Identities=17% Similarity=0.196 Sum_probs=127.9
Q ss_pred CCeEEEEEEcC--ceEEEEEeccCCcee-EEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCC-CCe--e-EE-ecCCC
Q 004094 193 GGHLVYLEIGD--GILTEVKHAQLEYEI-SCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD-LNL--I-TK-EHLGG 264 (774)
Q Consensus 193 ~~~~~~~~~~~--~~l~~~~~~~l~~~i-s~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~-~~~--~-~~-~~l~~ 264 (774)
.+.+..|++++ |+|..+++..++... ..+++++ ...+++++.+..|+|.+|-+.+ ..+ + .. .....
T Consensus 63 ~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~------~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~ 136 (346)
T COG2706 63 EGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE------DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS 136 (346)
T ss_pred cCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC------CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCC
Confidence 35666778986 789888777766544 5677753 3678999999889999999954 222 1 11 11111
Q ss_pred c-----cC--ceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccce--eeecCCCCeEEEEEEeCCcceEEEecC-
Q 004094 265 E-----II--PRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRK--KVSLGTQPITLRTFSSKNTTHVFAASD- 334 (774)
Q Consensus 265 ~-----~~--p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~--~~~lG~~pv~l~~~~~~~~~~v~~~~~- 334 (774)
. .. +++..+.+- ++..+.+-|+-..+..|.+++ |.|.... ..+-|.-|..+. |.- ....+++.++
T Consensus 137 ~p~~rQ~~~h~H~a~~tP~-~~~l~v~DLG~Dri~~y~~~d--g~L~~~~~~~v~~G~GPRHi~-FHp-n~k~aY~v~EL 211 (346)
T COG2706 137 GPHERQESPHVHSANFTPD-GRYLVVPDLGTDRIFLYDLDD--GKLTPADPAEVKPGAGPRHIV-FHP-NGKYAYLVNEL 211 (346)
T ss_pred CCCccccCCccceeeeCCC-CCEEEEeecCCceEEEEEccc--CccccccccccCCCCCcceEE-EcC-CCcEEEEEecc
Confidence 0 11 233333321 244566799999999999984 6554332 224455565432 322 3345566553
Q ss_pred -CCeEEEecC---CcEEEee------ecccCceeeecccCCCCCCcEEEEe---CCeEEEEEEcCCCC-e-EEEEEeCCC
Q 004094 335 -RPTVIYSSN---KKLLYSN------VNLKEVSHMCPFNSAAFPDSLAIAK---EGELTIGTIDDIQK-L-HIRSIPLGE 399 (774)
Q Consensus 335 -~p~~l~~~~---~~~~~~~------~~~~~i~~~~~f~~~~~~~~l~~~~---~~~l~i~~l~~~~~-~-~~~~i~l~~ 399 (774)
....++..+ +++.-.+ -....-...+.++-..+. .|+|++ -+.|.+.+++.... + .+...+..+
T Consensus 212 ~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg 290 (346)
T COG2706 212 NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEG 290 (346)
T ss_pred CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCC
Confidence 223333332 3332111 111112233333333222 466665 37888999988743 3 455566665
Q ss_pred c-ccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceE
Q 004094 400 H-PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEF 442 (774)
Q Consensus 400 t-p~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~ 442 (774)
. ||...+.+..+.++++- ++ ...-.+--+|+.|++.
T Consensus 291 ~~PR~F~i~~~g~~Liaa~-q~------sd~i~vf~~d~~TG~L 327 (346)
T COG2706 291 QFPRDFNINPSGRFLIAAN-QK------SDNITVFERDKETGRL 327 (346)
T ss_pred cCCccceeCCCCCEEEEEc-cC------CCcEEEEEEcCCCceE
Confidence 5 99999888776555553 32 1222334457777754
No 71
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.37 E-value=9.2 Score=46.33 Aligned_cols=219 Identities=15% Similarity=0.166 Sum_probs=115.6
Q ss_pred CCeEEEEEEcCCC------CeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC
Q 004094 376 EGELTIGTIDDIQ------KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 449 (774)
Q Consensus 376 ~~~l~i~~l~~~~------~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~ 449 (774)
++.+++..+.... ..+...+.-...+..+++++..+.+++.+.. .+.|++.|..+.+.+..++-
T Consensus 504 D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~---------Dg~v~lWd~~~~~~~~~~~~- 573 (793)
T PLN00181 504 NKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNF---------EGVVQVWDVARSQLVTEMKE- 573 (793)
T ss_pred CCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeC---------CCeEEEEECCCCeEEEEecC-
Confidence 6778888765321 1223333333445677887765444444432 24899999888877765543
Q ss_pred CCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc--cCe-EEEEE-
Q 004094 450 TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF--NGK-LLAAI- 525 (774)
Q Consensus 450 ~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~--~~~-lv~~~- 525 (774)
....+.++. +......+++.|. ..|.+.+|++..++. +......+.|.++.-. ++. |+++.
T Consensus 574 H~~~V~~l~---~~p~~~~~L~Sgs----------~Dg~v~iWd~~~~~~--~~~~~~~~~v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 574 HEKRVWSID---YSSADPTLLASGS----------DDGSVKLWSINQGVS--IGTIKTKANICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred CCCCEEEEE---EcCCCCCEEEEEc----------CCCEEEEEECCCCcE--EEEEecCCCeEEEEEeCCCCCEEEEEeC
Confidence 223355554 3322346777775 238999999875432 2222345677777642 344 44433
Q ss_pred CCEEEEEEeeecCCCchhhhhhcccccceEEEEEEE-eCCEEEEEeccccEEEEEEEcc-----CCeEEEEeccCCccee
Q 004094 526 NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQT-RGDFIVVGDLMKSISLLIYKHE-----EGAIEERARDYNANWM 599 (774)
Q Consensus 526 g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~-~~~~I~vgD~~~Sv~~~~~~~~-----~~~l~~~a~D~~~~~v 599 (774)
.+.|++|++. .+...+.....+.. .+.++.. .+++++.|..-..+.++..... ...+..+. .+...+
T Consensus 639 dg~I~iwD~~---~~~~~~~~~~~h~~--~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i 711 (793)
T PLN00181 639 DHKVYYYDLR---NPKLPLCTMIGHSK--TVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTNVK 711 (793)
T ss_pred CCeEEEEECC---CCCccceEecCCCC--CEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCCCe
Confidence 4678887753 11111111111111 2333443 4678888887777777544321 11222221 112233
Q ss_pred EEEEEeeCC-eEEEEccCCcEEEEeeCC
Q 004094 600 SAVEILDDD-IYLGAENNFNLFTVRKNS 626 (774)
Q Consensus 600 ~~~~~l~~~-~~l~~D~~gnl~~l~~~~ 626 (774)
..+.+-.++ .++++..+|.++++....
T Consensus 712 ~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 712 NFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred eEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 333333333 455667799999988653
No 72
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.33 E-value=3.1 Score=40.62 Aligned_cols=243 Identities=18% Similarity=0.222 Sum_probs=132.0
Q ss_pred cCcEEEEecCCCceeeeEeCCCCCcEEEEEEC-CCEEEEEEc-CCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCC
Q 004094 152 SGSVRLVSSTSRELRNEWKSPPGYSVNVATAN-ASQVLLATG-GGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGEN 229 (774)
Q Consensus 152 ~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~-~~~lvv~~~-~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~ 229 (774)
.+.||+.++..+..+.... ..|.+|..|+.. ++.=+-+.. +..+.++.+..|+..... .....+|-.+.+..
T Consensus 38 drtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNe---- 111 (307)
T KOG0316|consen 38 DRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNE---- 111 (307)
T ss_pred CceEEeecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEecC----
Confidence 5678888887766666654 367889888754 332222322 345667777766643321 24567888888853
Q ss_pred CCCcceEEEEEecCCEEEEEECCC--CCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccce
Q 004094 230 PSYSQIAAVGMWTDISVRIFSLPD--LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRK 307 (774)
Q Consensus 230 ~~~~~~~~vg~~~~~~i~i~~l~~--~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~ 307 (774)
.+..++-|.. |.++++|.-.. .+++....-..+ ...|+-+. +..++.|.-||.+-.|.+... .+.
T Consensus 112 --esSVv~Sgsf-D~s~r~wDCRS~s~ePiQildea~D-~V~Si~v~----~heIvaGS~DGtvRtydiR~G--~l~--- 178 (307)
T KOG0316|consen 112 --ESSVVASGSF-DSSVRLWDCRSRSFEPIQILDEAKD-GVSSIDVA----EHEIVAGSVDGTVRTYDIRKG--TLS--- 178 (307)
T ss_pred --cceEEEeccc-cceeEEEEcccCCCCccchhhhhcC-ceeEEEec----ccEEEeeccCCcEEEEEeecc--eee---
Confidence 2566777777 99999998643 455322111111 22344333 456888999999999998753 221
Q ss_pred eeecCCCCeEEEEEEeCCcceEEEecCCCeE--EEecCCcEE--EeeecccCceeeecccCCCCCCcEEE--EeCCeEEE
Q 004094 308 KVSLGTQPITLRTFSSKNTTHVFAASDRPTV--IYSSNKKLL--YSNVNLKEVSHMCPFNSAAFPDSLAI--AKEGELTI 381 (774)
Q Consensus 308 ~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~--l~~~~~~~~--~~~~~~~~i~~~~~f~~~~~~~~l~~--~~~~~l~i 381 (774)
.-.+| .|+.=..|. .+.++.++.+=...+ +-.+.|++- |-......-.-=|.++.. +.-++ ..++.+.+
T Consensus 179 sDy~g-~pit~vs~s-~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qs---dthV~sgSEDG~Vy~ 253 (307)
T KOG0316|consen 179 SDYFG-HPITSVSFS-KDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS---DTHVFSGSEDGKVYF 253 (307)
T ss_pred hhhcC-CcceeEEec-CCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccc---ceeEEeccCCceEEE
Confidence 11233 454333332 345777776533332 323333321 110000011111222211 11222 22455555
Q ss_pred EEEcCCCCeEEEEEeCCCcc--cEEEEecCCCEEEEEEecc
Q 004094 382 GTIDDIQKLHIRSIPLGEHP--RRICHQEQSRTFAICSLKN 420 (774)
Q Consensus 382 ~~l~~~~~~~~~~i~l~~tp--~~i~y~~~~~~~~v~~~~~ 420 (774)
..|-+. -.+.+.+...+| ..+.|||....|.++..+.
T Consensus 254 wdLvd~--~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~ 292 (307)
T KOG0316|consen 254 WDLVDE--TQISKLSVVSTVIVTDLSCHPTMDDFITATGHG 292 (307)
T ss_pred EEeccc--eeeeeeccCCceeEEeeecccCccceeEecCCc
Confidence 665543 234455555554 6688999999999887663
No 73
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=95.30 E-value=3.3 Score=40.78 Aligned_cols=134 Identities=14% Similarity=0.152 Sum_probs=77.8
Q ss_pred CcEEEEecCCCceeeeEeCCCCCcEEEEEECCC--EEEEEEcCCeEEEEEEcCceEEEEEeccC-CceeEEEEeCCCCCC
Q 004094 153 GSVRLVSSTSRELRNEWKSPPGYSVNVATANAS--QVLLATGGGHLVYLEIGDGILTEVKHAQL-EYEISCLDINPIGEN 229 (774)
Q Consensus 153 ~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~~--~lvv~~~~~~~~~~~~~~~~l~~~~~~~l-~~~is~l~~~~~~~~ 229 (774)
..||+....++.....+.-+++ .+..-.+.++ .+..+ .+..+..|.+..+.-.++..++. .+.|+++.|..
T Consensus 20 hTIRfWqa~tG~C~rTiqh~ds-qVNrLeiTpdk~~LAaa-~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~---- 93 (311)
T KOG0315|consen 20 HTIRFWQALTGICSRTIQHPDS-QVNRLEITPDKKDLAAA-GNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC---- 93 (311)
T ss_pred ceeeeeehhcCeEEEEEecCcc-ceeeEEEcCCcchhhhc-cCCeeEEEEccCCCCCceeEEeccCCceEEEEEee----
Confidence 3455554444433333333332 2333344332 33333 35567677776533234433433 36788888843
Q ss_pred CCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecC
Q 004094 230 PSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMK 299 (774)
Q Consensus 230 ~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~ 299 (774)
.+.++.-|.. ||+++||.+..+.+.-....+ .+..++++.+ .+..|++|..+|.+-++.+...
T Consensus 94 --dgrWMyTgse-Dgt~kIWdlR~~~~qR~~~~~--spVn~vvlhp--nQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 94 --DGRWMYTGSE-DGTVKIWDLRSLSCQRNYQHN--SPVNTVVLHP--NQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred --cCeEEEecCC-CceEEEEeccCcccchhccCC--CCcceEEecC--CcceEEeecCCCcEEEEEccCC
Confidence 2567777766 999999999875442221222 3456666653 3678999999999999987653
No 74
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=95.27 E-value=0.98 Score=49.37 Aligned_cols=206 Identities=14% Similarity=0.140 Sum_probs=112.5
Q ss_pred eeE-EEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCeEEEecCCcEEEe---eeccc
Q 004094 279 ISY-LLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYS---NVNLK 354 (774)
Q Consensus 279 ~~~-L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~~~~~~~~---~~~~~ 354 (774)
..| |-.|.--=.+-+|.+...+ |++ .+.+-..+|.|.++..+-...||+.++|..=+..-.| ..|. |-...
T Consensus 63 GqY~lAtG~YKP~ikvydlanLS--LKF--ERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G-~hy~~RIP~~GR 137 (703)
T KOG2321|consen 63 GQYLLATGTYKPQIKVYDLANLS--LKF--ERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG-RHYRTRIPKFGR 137 (703)
T ss_pred CcEEEEecccCCceEEEEcccce--eee--eecccccceeEEEeccchhhheEeecCceeeehhhcC-eeeeeecCcCCc
Confidence 344 4457777788888876532 333 3567778899998864444678888888664443222 2221 21111
Q ss_pred CceeeecccCCCCCCcEEEEeCCeEEEEEEcCCCCeEEEEEeCC-CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEE
Q 004094 355 EVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLG-EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVR 433 (774)
Q Consensus 355 ~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~-~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~ 433 (774)
++ .++.+.|. +|+.+.+..+.+++-.++-..+.+.+. +....+-..+...++++.+. .+.+.
T Consensus 138 Dm----~y~~~scD---ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~----------~g~VE 200 (703)
T KOG2321|consen 138 DM----KYHKPSCD---LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTE----------DGVVE 200 (703)
T ss_pred cc----cccCCCcc---EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEeccc----------CceEE
Confidence 11 13334443 333333334444443332222222222 12233444455555555442 35899
Q ss_pred EEECCCceEEEEEECCCC-------ceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEe
Q 004094 434 LLDDQTFEFISTYPLDTF-------EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE 506 (774)
Q Consensus 434 l~d~~~~~~i~~~~~~~~-------E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~ 506 (774)
++||.+.....+++...+ ...-++..+.|.++ .-.++||| +.|.+|+|++.-.+--++..+.
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGt----------s~G~v~iyDLRa~~pl~~kdh~ 269 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGT----------STGSVLIYDLRASKPLLVKDHG 269 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCC-ceeEEeec----------cCCcEEEEEcccCCceeecccC
Confidence 999987776666555433 11122444556643 56789999 4599999999865555555555
Q ss_pred ecCceeEeccc
Q 004094 507 TKGAVYSLNAF 517 (774)
Q Consensus 507 ~~g~v~~i~~~ 517 (774)
..-|+-.+.-.
T Consensus 270 ~e~pi~~l~~~ 280 (703)
T KOG2321|consen 270 YELPIKKLDWQ 280 (703)
T ss_pred Cccceeeeccc
Confidence 55566665543
No 75
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.27 E-value=0.99 Score=48.41 Aligned_cols=184 Identities=14% Similarity=0.123 Sum_probs=100.3
Q ss_pred cEEEEeCCeEEEEEEcCCC-CeEEEEEeCC-CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEE
Q 004094 370 SLAIAKEGELTIGTIDDIQ-KLHIRSIPLG-EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP 447 (774)
Q Consensus 370 ~l~~~~~~~l~i~~l~~~~-~~~~~~i~l~-~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~ 447 (774)
+++.++++.=.+.+|.+.+ ++..|+..=. .|+..+.|. .+..|+...+. .+.|-+....+..--..+.
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN-~~DeyiAsvs~---------gGdiiih~~~t~~~tt~f~ 160 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN-NTDEYIASVSD---------GGDIIIHGTKTKQKTTTFT 160 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEec-CCcceeEEecc---------CCcEEEEecccCcccccee
Confidence 3444544333333333332 4444443221 355556665 33444444332 2345566655554444555
Q ss_pred CCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEec--cccCeEEEEE
Q 004094 448 LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLN--AFNGKLLAAI 525 (774)
Q Consensus 448 ~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~--~~~~~lv~~~ 525 (774)
.+.+..+ ..+.+..- +.+++ +++- ..|-+.+|++...+-..-+.+.++.|...|| +.+..|++++
T Consensus 161 ~~sgqsv---Rll~ys~s-kr~lL-~~as--------d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV 227 (673)
T KOG4378|consen 161 IDSGQSV---RLLRYSPS-KRFLL-SIAS--------DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV 227 (673)
T ss_pred cCCCCeE---EEeecccc-cceee-Eeec--------cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe
Confidence 5555554 22333322 23333 3332 4599999999755444444445566666555 4578899888
Q ss_pred C--CEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEeccccEEEEEEE
Q 004094 526 N--QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYK 581 (774)
Q Consensus 526 g--~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~ 581 (774)
| ++|++|+. +.+++...-.|..+...+...-+|-++.+|....-+..|...
T Consensus 228 G~Dkki~~yD~-----~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 228 GYDKKINIYDI-----RSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred cccceEEEeec-----ccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence 7 67777763 345565555555555556666677788888888877654433
No 76
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=95.24 E-value=3.2 Score=43.85 Aligned_cols=204 Identities=17% Similarity=0.250 Sum_probs=107.3
Q ss_pred cceEEEEEecCCEEEEEECCCCCeeEEecCCCc-cCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCC------Ccccc
Q 004094 233 SQIAAVGMWTDISVRIFSLPDLNLITKEHLGGE-IIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKT------GELTD 305 (774)
Q Consensus 233 ~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~-~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~------~~l~~ 305 (774)
++.++-|.| +|.+.+|+.|+++.+.+ +-+- .-...+.+.+..+...|.-+..||.+..|.++..+ |++..
T Consensus 187 s~~laT~sw-sG~~kvW~~~~~~~~~~--l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~R 263 (459)
T KOG0272|consen 187 SKHLATGSW-SGLVKVWSVPQCNLLQT--LRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLAR 263 (459)
T ss_pred CCeEEEeec-CCceeEeecCCcceeEE--EeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhh
Confidence 688999999 99999999998765432 1100 00111222222123457778889999998876532 22211
Q ss_pred c-ee------eecCC-------------------------CCeEEEEEEeCCcceEEEecCCCeE--EEecC-Cc-EEEe
Q 004094 306 R-KK------VSLGT-------------------------QPITLRTFSSKNTTHVFAASDRPTV--IYSSN-KK-LLYS 349 (774)
Q Consensus 306 ~-~~------~~lG~-------------------------~pv~l~~~~~~~~~~v~~~~~~p~~--l~~~~-~~-~~~~ 349 (774)
. +. ..+|+ .+|.=..|+ ....+.++|.--.+ ++.-+ ++ +-|.
T Consensus 264 Vs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~--~DGSL~~tGGlD~~~RvWDlRtgr~im~L 341 (459)
T KOG0272|consen 264 VSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ--PDGSLAATGGLDSLGRVWDLRTGRCIMFL 341 (459)
T ss_pred heeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEec--CCCceeeccCccchhheeecccCcEEEEe
Confidence 0 00 01111 111111111 11133344322211 11111 22 2222
Q ss_pred eecccCceeeecccCCCCCCcEEEEe---CCeEEEEEEcCCCCeEEEEEeCCC-cccEEEEecCCCEEEEEEeccCCCCC
Q 004094 350 NVNLKEVSHMCPFNSAAFPDSLAIAK---EGELTIGTIDDIQKLHIRSIPLGE-HPRRICHQEQSRTFAICSLKNQSCAE 425 (774)
Q Consensus 350 ~~~~~~i~~~~~f~~~~~~~~l~~~~---~~~l~i~~l~~~~~~~~~~i~l~~-tp~~i~y~~~~~~~~v~~~~~~~~~~ 425 (774)
.-+.++|.+++ -.|+++.+++ ++..++..|-.... .-.||=.. -+.++.|.|..+.|++.++-.
T Consensus 342 ~gH~k~I~~V~-----fsPNGy~lATgs~Dnt~kVWDLR~r~~--ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD----- 409 (459)
T KOG0272|consen 342 AGHIKEILSVA-----FSPNGYHLATGSSDNTCKVWDLRMRSE--LYTIPAHSNLVSQVKYSPQEGYFLVTASYD----- 409 (459)
T ss_pred cccccceeeEe-----ECCCceEEeecCCCCcEEEeeeccccc--ceecccccchhhheEecccCCeEEEEcccC-----
Confidence 22233443332 3478888877 46677766654333 44455433 378899999888888866542
Q ss_pred ceeeeEEEEEECCCceEEEEEECCCCceEEEEE
Q 004094 426 ESEMHFVRLLDDQTFEFISTYPLDTFEYGCSIL 458 (774)
Q Consensus 426 ~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~ 458 (774)
..+++.++.+|..+.+..=-+++ |.|+.
T Consensus 410 ----~t~kiWs~~~~~~~ksLaGHe~k-V~s~D 437 (459)
T KOG0272|consen 410 ----NTVKIWSTRTWSPLKSLAGHEGK-VISLD 437 (459)
T ss_pred ----cceeeecCCCcccchhhcCCccc-eEEEE
Confidence 48999999999988765543333 44443
No 77
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.22 E-value=6.8 Score=43.93 Aligned_cols=241 Identities=19% Similarity=0.261 Sum_probs=133.6
Q ss_pred CceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCC--eeEEecCCC-ccCceeEEeeeecCeeEEEEEeCCCcE
Q 004094 215 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLN--LITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHL 291 (774)
Q Consensus 215 ~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~--~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l 291 (774)
..-++|+++++. ...++.+.+ ++.+.+|.....+ +.. .+.. .....++++.. +..+++-+..|+.+
T Consensus 159 ~~sv~~~~fs~~------g~~l~~~~~-~~~i~~~~~~~~~~~~~~--~l~~h~~~v~~~~fs~--d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 159 CPSVTCVDFSPD------GRALAAASS-DGLIRIWKLEGIKSNLLR--ELSGHTRGVSDVAFSP--DGSYLLSGSDDKTL 227 (456)
T ss_pred cCceEEEEEcCC------CCeEEEccC-CCcEEEeecccccchhhc--cccccccceeeeEECC--CCcEEEEecCCceE
Confidence 455788888652 455665556 9999999985444 211 1111 11233444332 34478889999999
Q ss_pred EEEEEecCCCccccceeeecCC-CCeEEEEEEeCCcceEEE-ecCCCeEEEecCC-c-EEEeeecccCceeeecccCCCC
Q 004094 292 LNFLLNMKTGELTDRKKVSLGT-QPITLRTFSSKNTTHVFA-ASDRPTVIYSSNK-K-LLYSNVNLKEVSHMCPFNSAAF 367 (774)
Q Consensus 292 ~~y~~~~~~~~l~~~~~~~lG~-~pv~l~~~~~~~~~~v~~-~~~~p~~l~~~~~-~-~~~~~~~~~~i~~~~~f~~~~~ 367 (774)
-.|.+.. .+. ..+... |- .+|.=..|.-.+ +-++. ..|....++.-+. . ....+...+.+.++ .|+..
T Consensus 228 riwd~~~-~~~--~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~-~f~~d-- 299 (456)
T KOG0266|consen 228 RIWDLKD-DGR--NLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGL-AFSPD-- 299 (456)
T ss_pred EEeeccC-CCe--EEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEE-EECCC--
Confidence 9998822 111 122222 32 233222333223 22222 2344444444332 2 22223232334333 34321
Q ss_pred CCcEEEEe-CCeEEEEEEcCCCCeEEEEEeCCCcc---cEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEE
Q 004094 368 PDSLAIAK-EGELTIGTIDDIQKLHIRSIPLGEHP---RRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFI 443 (774)
Q Consensus 368 ~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~tp---~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i 443 (774)
...++..+ ++.+++..+........+.+.-...+ +.+.++|+.+.+++++.+. .+++.|......+
T Consensus 300 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~----------~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 300 GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR----------TLKLWDLRSGKSV 369 (456)
T ss_pred CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC----------eEEEEEccCCcce
Confidence 12233333 67788888876653333444444455 7788999988888777654 7899888877777
Q ss_pred EEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeC
Q 004094 444 STYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVED 496 (774)
Q Consensus 444 ~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~ 496 (774)
..+.-..++ ..|+..... .....+++.|. ..+.+++|++..
T Consensus 370 ~~~~~~~~~-~~~~~~~~~-~~~~~~i~sg~----------~d~~v~~~~~~s 410 (456)
T KOG0266|consen 370 GTYTGHSNL-VRCIFSPTL-STGGKLIYSGS----------EDGSVYVWDSSS 410 (456)
T ss_pred eeecccCCc-ceeEecccc-cCCCCeEEEEe----------CCceEEEEeCCc
Confidence 776666665 355544433 23567888886 338899998874
No 78
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=95.18 E-value=4.8 Score=42.02 Aligned_cols=279 Identities=17% Similarity=0.193 Sum_probs=134.8
Q ss_pred CCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeec-CeeEEEEEeCCCcEE
Q 004094 214 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFE-GISYLLCALGDGHLL 292 (774)
Q Consensus 214 l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~-~~~~L~vgl~~G~l~ 292 (774)
.+..||++.. .+.+++-|+| ||.++||++..-..... .+......+++-+..+ ....++.+..|-.+.
T Consensus 104 hdDWVSsv~~--------~~~~IltgsY-Dg~~riWd~~Gk~~~~~--~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~ 172 (423)
T KOG0313|consen 104 HDDWVSSVKG--------ASKWILTGSY-DGTSRIWDLKGKSIKTI--VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLR 172 (423)
T ss_pred chhhhhhhcc--------cCceEEEeec-CCeeEEEecCCceEEEE--ecCCcceeeeEEEecCCccceEEEecCCceEE
Confidence 3455555544 2688999999 99999999876332111 1111123444333222 233466788888899
Q ss_pred EEEEecCCCccccceeeecCC-CCeEEEEEEeCCcceEEEecCCCeEE--Ee--cC---------Cc----EEEeeecc-
Q 004094 293 NFLLNMKTGELTDRKKVSLGT-QPITLRTFSSKNTTHVFAASDRPTVI--YS--SN---------KK----LLYSNVNL- 353 (774)
Q Consensus 293 ~y~~~~~~~~l~~~~~~~lG~-~pv~l~~~~~~~~~~v~~~~~~p~~l--~~--~~---------~~----~~~~~~~~- 353 (774)
.|.++.....+...+..+ |- .+|. .......+..||.|.--..+ .. .+ .+ -+..+...
T Consensus 173 Lw~~~~~~~~~~~~~~~~-GHk~~V~--sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~ 249 (423)
T KOG0313|consen 173 LWKWNVGENKVKALKVCR-GHKRSVD--SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT 249 (423)
T ss_pred EEEecCchhhhhHHhHhc-cccccee--EEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence 999987543332222111 32 2332 12223344567766443322 22 00 00 00000000
Q ss_pred -cCceeee----cccCCC-CCCcEEEEe--CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCC
Q 004094 354 -KEVSHMC----PFNSAA-FPDSLAIAK--EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAE 425 (774)
Q Consensus 354 -~~i~~~~----~f~~~~-~~~~l~~~~--~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~ 425 (774)
.++..+. +..... ++...+|.. +-.++...+.... .+.++..+.....|.|++..++++.+++++
T Consensus 250 r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~--~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr----- 322 (423)
T KOG0313|consen 250 RTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGG--LKSTLTTNKSLNCISYSPLSKLLASGSSDR----- 322 (423)
T ss_pred cCceEEecccccceeeEEEcCCCceEeecccceEEEEEeeccc--ceeeeecCcceeEeecccccceeeecCCCC-----
Confidence 0010000 000000 111223322 3445544444332 233444455667789999888888888775
Q ss_pred ceeeeEEEEEECCCce-EEEEEECCCCc-eEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe--EEE
Q 004094 426 ESEMHFVRLLDDQTFE-FISTYPLDTFE-YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK--LQL 501 (774)
Q Consensus 426 ~~~~~~l~l~d~~~~~-~i~~~~~~~~E-~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~k--l~~ 501 (774)
-++|.||.+.. -+-++.|--+- .+.++ .|. ...+|..|..++ -|.+.+|++..-+ |--
T Consensus 323 -----~irl~DPR~~~gs~v~~s~~gH~nwVssv-kws---p~~~~~~~S~S~---------D~t~klWDvRS~k~plyd 384 (423)
T KOG0313|consen 323 -----HIRLWDPRTGDGSVVSQSLIGHKNWVSSV-KWS---PTNEFQLVSGSY---------DNTVKLWDVRSTKAPLYD 384 (423)
T ss_pred -----ceeecCCCCCCCceeEEeeecchhhhhhe-ecC---CCCceEEEEEec---------CCeEEEEEeccCCCccee
Confidence 69999997643 22333443222 33333 232 124555555443 2677888876332 333
Q ss_pred EEEEeecCceeEeccccCeEEEEEC--CEEEEEE
Q 004094 502 IAEKETKGAVYSLNAFNGKLLAAIN--QKIQLYK 533 (774)
Q Consensus 502 ~~~~~~~g~v~~i~~~~~~lv~~~g--~~l~v~~ 533 (774)
++. ....|.++.=-++.++++-| ++|++|+
T Consensus 385 I~~--h~DKvl~vdW~~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 385 IAG--HNDKVLSVDWNEGGLIVSGGADNKLRIFK 416 (423)
T ss_pred ecc--CCceEEEEeccCCceEEeccCcceEEEec
Confidence 332 25666666644554444433 6777766
No 79
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=95.18 E-value=2.2 Score=46.20 Aligned_cols=241 Identities=16% Similarity=0.176 Sum_probs=125.3
Q ss_pred ccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEE-----EEC----CCCce--EEEEEEEEEcCCCceE
Q 004094 401 PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST-----YPL----DTFEY--GCSILSCSFSDDSNVY 469 (774)
Q Consensus 401 p~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~-----~~~----~~~E~--~~si~~~~~~~~~~~~ 469 (774)
.+.+.|++..+.++|++... ..+++|...++.+.. |.- -+++. ++|.+ |.-. .+..|
T Consensus 217 i~sl~ys~Tg~~iLvvsg~a----------qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~-whP~-~k~~F 284 (641)
T KOG0772|consen 217 INSLQYSVTGDQILVVSGSA----------QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGC-WHPD-NKEEF 284 (641)
T ss_pred cceeeecCCCCeEEEEecCc----------ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccc-cccC-cccce
Confidence 45688999999999998664 688888876665422 211 11221 12211 2111 11222
Q ss_pred EEEEeeeeCCCCCCCcceEEEEEEEeCCe--EEEEEEEeecC---ceeEeccc-cCe-EEEEE-CCEEEEEEeeecCCCc
Q 004094 470 YCVGTAYVLPEENEPTKGRILVFIVEDGK--LQLIAEKETKG---AVYSLNAF-NGK-LLAAI-NQKIQLYKWMLRDDGT 541 (774)
Q Consensus 470 i~VGT~~~~~~e~~~~~Grl~v~~i~~~k--l~~~~~~~~~g---~v~~i~~~-~~~-lv~~~-g~~l~v~~~~~~~~~~ 541 (774)
+- ++ .-|.+.+|++.+.| ++++......| +|++++-- +|. |.+|+ ...|.+|++ +.
T Consensus 285 lT--~s---------~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~-----~~ 348 (641)
T KOG0772|consen 285 LT--CS---------YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDK-----GS 348 (641)
T ss_pred EE--ec---------CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeec-----CC
Confidence 21 21 23899999998643 55444433332 56554432 355 44444 478888663 11
Q ss_pred hhhh-----hhcccccc-eEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEE---
Q 004094 542 RELQ-----SECGHHGH-ILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLG--- 612 (774)
Q Consensus 542 ~~l~-----~~~~~~~~-~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~--- 612 (774)
+-.. +.+-..+. +..++.+..||+++-=-.-+++.++..+.-+..|.....=+.+...+.|+|-.++.+|+
T Consensus 349 ~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 349 RTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGT 428 (641)
T ss_pred cccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecc
Confidence 1111 11211111 22333445677776655556666654433233333332234445566777766665443
Q ss_pred ----EccCCcEEEEeeCCCCCCccccceeeeEEEEEcCcccceEEeeeeeecCCCCCCCCccEEEEEccccceEEEEecC
Q 004094 613 ----AENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLP 688 (774)
Q Consensus 613 ----~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gsi~~i~~l~ 688 (774)
.+..|+|++|.. ..|+.+....+.. .+..+. + | ...-++|+.|+.+|.+.++..=+
T Consensus 429 S~~~~~~~g~L~f~d~----------~t~d~v~ki~i~~--aSvv~~-~---W----hpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 429 SAPNGMTAGTLFFFDR----------MTLDTVYKIDIST--ASVVRC-L---W----HPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred cccCCCCCceEEEEec----------cceeeEEEecCCC--ceEEEE-e---e----cchhhheeeecCCCceEEEECcc
Confidence 235678888875 3455555554431 111111 1 1 11346899999999998876654
Q ss_pred h
Q 004094 689 H 689 (774)
Q Consensus 689 ~ 689 (774)
+
T Consensus 489 ~ 489 (641)
T KOG0772|consen 489 E 489 (641)
T ss_pred c
Confidence 4
No 80
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.18 E-value=0.83 Score=50.14 Aligned_cols=259 Identities=17% Similarity=0.169 Sum_probs=126.0
Q ss_pred eeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEE
Q 004094 217 EISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLL 296 (774)
Q Consensus 217 ~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~ 296 (774)
.|.||++.+ ...+++-|.. +|+++||-+-+..++.+..+.. ..++++..+..+...|.+..++-.++ +
T Consensus 402 ~Vr~iSvdp------~G~wlasGsd-DGtvriWEi~TgRcvr~~~~d~--~I~~vaw~P~~~~~vLAvA~~~~~~i---v 469 (733)
T KOG0650|consen 402 LVRSISVDP------SGEWLASGSD-DGTVRIWEIATGRCVRTVQFDS--EIRSVAWNPLSDLCVLAVAVGECVLI---V 469 (733)
T ss_pred eEEEEEecC------CcceeeecCC-CCcEEEEEeecceEEEEEeecc--eeEEEEecCCCCceeEEEEecCceEE---e
Confidence 344665543 3678888877 9999999999888877666543 55677666666666667766655222 2
Q ss_pred ecCCC-ccccce-eeecCCCCeEEEEEEeCCcceEEEecCCCeEEEecC----CcEEEeeecccCceeeecccCCCCCCc
Q 004094 297 NMKTG-ELTDRK-KVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSN----KKLLYSNVNLKEVSHMCPFNSAAFPDS 370 (774)
Q Consensus 297 ~~~~~-~l~~~~-~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~~----~~~~~~~~~~~~i~~~~~f~~~~~~~~ 370 (774)
++.=| .+.... ...++..|. .....+..+ .|.-.+. ..++..=-..++|..++ .| .-.+.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~------~~~p~~~~~-----~W~~~~~~e~~~~v~~~I~~~k~i~~vt-WH--rkGDY 535 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPN------ESEPDAAVV-----TWSRASLDELEKGVCIVIKHPKSIRQVT-WH--RKGDY 535 (733)
T ss_pred CccccchhhhcchhhhhhcCCC------ccCCcccce-----eechhhhhhhccceEEEEecCCccceee-ee--cCCce
Confidence 22111 010000 011111110 000000000 1111100 01111100011111111 01 01122
Q ss_pred EEEE--e--CCeEEEEEEcCCCC-eEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEE
Q 004094 371 LAIA--K--EGELTIGTIDDIQK-LHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 445 (774)
Q Consensus 371 l~~~--~--~~~l~i~~l~~~~~-~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~ 445 (774)
|..+ + +..+.|.+|..... .+.++ .+++|.++.|||....++|++-+ .++++|-...+.+.
T Consensus 536 latV~~~~~~~~VliHQLSK~~sQ~PF~k--skG~vq~v~FHPs~p~lfVaTq~-----------~vRiYdL~kqelvK- 601 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKRKSQSPFRK--SKGLVQRVKFHPSKPYLFVATQR-----------SVRIYDLSKQELVK- 601 (733)
T ss_pred EEEeccCCCcceEEEEecccccccCchhh--cCCceeEEEecCCCceEEEEecc-----------ceEEEehhHHHHHH-
Confidence 3222 2 24566667665431 22222 25789999999999999998855 68999875433221
Q ss_pred EECCCCceE-EEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC-e-EEEEEEEeecCceeEeccccCeEE
Q 004094 446 YPLDTFEYG-CSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG-K-LQLIAEKETKGAVYSLNAFNGKLL 522 (774)
Q Consensus 446 ~~~~~~E~~-~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~-k-l~~~~~~~~~g~v~~i~~~~~~lv 522 (774)
++.++-.. .+|. +.. +..-+++|+. -+++.+|+++-+ | .+.+ .-++.+|++++....+=+
T Consensus 602 -kL~tg~kwiS~ms---ihp-~GDnli~gs~----------d~k~~WfDldlsskPyk~l--r~H~~avr~Va~H~ryPL 664 (733)
T KOG0650|consen 602 -KLLTGSKWISSMS---IHP-NGDNLILGSY----------DKKMCWFDLDLSSKPYKTL--RLHEKAVRSVAFHKRYPL 664 (733)
T ss_pred -HHhcCCeeeeeee---ecC-CCCeEEEecC----------CCeeEEEEcccCcchhHHh--hhhhhhhhhhhhccccce
Confidence 22233222 2222 222 3345666763 379999998732 2 1111 123667888887666634
Q ss_pred EEEC---CEEEEE
Q 004094 523 AAIN---QKIQLY 532 (774)
Q Consensus 523 ~~~g---~~l~v~ 532 (774)
+|.| +.++||
T Consensus 665 fas~sdDgtv~Vf 677 (733)
T KOG0650|consen 665 FASGSDDGTVIVF 677 (733)
T ss_pred eeeecCCCcEEEE
Confidence 4443 345443
No 81
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.17 E-value=4.6 Score=41.69 Aligned_cols=240 Identities=15% Similarity=0.175 Sum_probs=117.3
Q ss_pred EEEECCCEEEEEEcCCeEEEEEEcC-ceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCee
Q 004094 179 VATANASQVLLATGGGHLVYLEIGD-GILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLI 257 (774)
Q Consensus 179 ~a~~~~~~lvv~~~~~~~~~~~~~~-~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~ 257 (774)
+++..+..++|+.++| +..++++. ....++.+. ..|+-+.+.+ + .+. ++... |+.+.+|+++.+...
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~---~~I~ql~vl~--~----~~~-llvLs-d~~l~~~~L~~l~~~ 69 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL---SSITQLSVLP--E----LNL-LLVLS-DGQLYVYDLDSLEPV 69 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCCccceeEeec---ceEEEEEEec--c----cCE-EEEEc-CCccEEEEchhhccc
Confidence 3455688999998777 44446622 222222111 1166555432 1 223 33445 799999999876554
Q ss_pred EEe-------------cCCCccCceeEE-eeeecCeeEEEEEeCCCcEEEEEEecCCCcc-ccceeeecCCCCeEEEEEE
Q 004094 258 TKE-------------HLGGEIIPRSVL-LCAFEGISYLLCALGDGHLLNFLLNMKTGEL-TDRKKVSLGTQPITLRTFS 322 (774)
Q Consensus 258 ~~~-------------~l~~~~~p~si~-~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l-~~~~~~~lG~~pv~l~~~~ 322 (774)
... .++...-....+ .....+...|++..+. .+..|++....... ...+...+-..|..+.-+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~- 147 (275)
T PF00780_consen 70 STSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL- 147 (275)
T ss_pred cccccccccccccccccccccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEEcCCCcEEEEEe-
Confidence 321 111100111111 0112345678888777 88889998743333 444555666666655433
Q ss_pred eCCcceEEEecCCCeEEEecC-CcE-EEeeecccCc------eeeecccCCCCC-CcEEEEeCCeEEEEEEcCCCCeEEE
Q 004094 323 SKNTTHVFAASDRPTVIYSSN-KKL-LYSNVNLKEV------SHMCPFNSAAFP-DSLAIAKEGELTIGTIDDIQKLHIR 393 (774)
Q Consensus 323 ~~~~~~v~~~~~~p~~l~~~~-~~~-~~~~~~~~~i------~~~~~f~~~~~~-~~l~~~~~~~l~i~~l~~~~~~~~~ 393 (774)
.+.+++...+-+.++.-+ +.. .+.+...... ....|......+ +-++++-++.-.+....- ......
T Consensus 148 ---~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~~G-~~~r~~ 223 (275)
T PF00780_consen 148 ---GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNKNG-EPSRKS 223 (275)
T ss_pred ---CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEEEEcCCC-CcCccc
Confidence 234444445555544332 222 1111111110 000000000011 122222222111111111 111234
Q ss_pred EEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC
Q 004094 394 SIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 449 (774)
Q Consensus 394 ~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~ 449 (774)
.|.-...|..++|... |+++..++ .|++.+..+.+.+.++.++
T Consensus 224 ~i~W~~~p~~~~~~~p---yli~~~~~----------~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 224 TIQWSSAPQSVAYSSP---YLIAFSSN----------SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEEcCCchhEEEEECC---EEEEECCC----------EEEEEECcCCcEEEEEECC
Confidence 7777889999999753 77776553 6888888888777776654
No 82
>PTZ00420 coronin; Provisional
Probab=95.09 E-value=8.2 Score=44.18 Aligned_cols=197 Identities=13% Similarity=0.106 Sum_probs=97.6
Q ss_pred CcccEEEEecC-CCEEEEEEeccCCCCCceeeeEEEEEECCCce-EEE-----EEECCCC-ceEEEEEEEEEcCCCceEE
Q 004094 399 EHPRRICHQEQ-SRTFAICSLKNQSCAEESEMHFVRLLDDQTFE-FIS-----TYPLDTF-EYGCSILSCSFSDDSNVYY 470 (774)
Q Consensus 399 ~tp~~i~y~~~-~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~-~i~-----~~~~~~~-E~~~si~~~~~~~~~~~~i 470 (774)
..+..+.++|. .+.++.++.+ +.|++.|..+.. ... ...+..+ ..+.++ .+...+..++
T Consensus 75 ~~V~~lafsP~~~~lLASgS~D----------gtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sV---af~P~g~~iL 141 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSED----------LTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII---DWNPMNYYIM 141 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCC----------CeEEEEECCCCCccccccccceEEeecCCCcEEEE---EECCCCCeEE
Confidence 45678899987 4555545433 368888864321 110 0122222 233333 2333333334
Q ss_pred EEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEEEE--CCEEEEEEeeecCCCchhhhhh
Q 004094 471 CVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQLYKWMLRDDGTRELQSE 547 (774)
Q Consensus 471 ~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~~--g~~l~v~~~~~~~~~~~~l~~~ 547 (774)
+.|. ..|.+.+|++..++.. ......++|++++-- +|.++++. +++|++|+.. .+ ..+...
T Consensus 142 aSgS----------~DgtIrIWDl~tg~~~--~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~R---sg-~~i~tl 205 (568)
T PTZ00420 142 CSSG----------FDSFVNIWDIENEKRA--FQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR---KQ-EIASSF 205 (568)
T ss_pred EEEe----------CCCeEEEEECCCCcEE--EEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECC---CC-cEEEEE
Confidence 4443 2379999999866532 222346788888743 56665543 5789998753 11 111111
Q ss_pred cccccceE--EEE---EEEeCCEEEEEecc----ccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeC--Ce-EEEEcc
Q 004094 548 CGHHGHIL--ALY---VQTRGDFIVVGDLM----KSISLLIYKHEEGAIEERARDYNANWMSAVEILDD--DI-YLGAEN 615 (774)
Q Consensus 548 ~~~~~~~~--~~~---l~~~~~~I~vgD~~----~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~--~~-~l~~D~ 615 (774)
..+..... .+. +...+++|+.+-.- +.|.++..+.....+..+.-|..+-.++. +.+. +. ++++-.
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p--~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP--HYDESTGLIYLIGKG 283 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE--eeeCCCCCEEEEEEC
Confidence 11211111 111 11245677764433 24666443322333444333433322221 2232 23 567778
Q ss_pred CCcEEEEeeCC
Q 004094 616 NFNLFTVRKNS 626 (774)
Q Consensus 616 ~gnl~~l~~~~ 626 (774)
++++.++++..
T Consensus 284 D~tIr~~e~~~ 294 (568)
T PTZ00420 284 DGNCRYYQHSL 294 (568)
T ss_pred CCeEEEEEccC
Confidence 99999999864
No 83
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=95.06 E-value=4.2 Score=40.71 Aligned_cols=135 Identities=14% Similarity=0.163 Sum_probs=80.3
Q ss_pred cCcEEEEecCCCceeeeEeCCCCCcEEEEEECCC-EEEEE-EcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCC
Q 004094 152 SGSVRLVSSTSRELRNEWKSPPGYSVNVATANAS-QVLLA-TGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGEN 229 (774)
Q Consensus 152 ~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~~-~lvv~-~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~ 229 (774)
.+.+++.+.+..+..+.... ...-+..++++++ -++.+ -.++++++..+++++- +..++....|.+++|.|
T Consensus 171 DktvKvWnl~~~~l~~~~~g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~--lysl~a~~~v~sl~fsp---- 243 (315)
T KOG0279|consen 171 DKTVKVWNLRNCQLRTTFIG-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN--LYSLEAFDIVNSLCFSP---- 243 (315)
T ss_pred CceEEEEccCCcchhhcccc-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCce--eEeccCCCeEeeEEecC----
Confidence 35567777765443333222 2233566667644 33332 2346788877766432 23345556788899975
Q ss_pred CCCcceEEEEEecCCEEEEEECCCCCeeEEecCCC------ccCceeEEeeeecCeeEEEEEeCCCcEEEEEEe
Q 004094 230 PSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG------EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLN 297 (774)
Q Consensus 230 ~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~------~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~ 297 (774)
....++.++ +.+|.||++..-.++..-.+.. ...|+.+.+.-..+...||.|..||.+.++++.
T Consensus 244 --nrywL~~at--~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 244 --NRYWLCAAT--ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred --CceeEeecc--CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 234455443 4579999998755543222210 124666665555567889999999999998864
No 84
>PTZ00421 coronin; Provisional
Probab=95.01 E-value=8 Score=43.65 Aligned_cols=78 Identities=19% Similarity=0.102 Sum_probs=47.9
Q ss_pred CCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeE-----EecCCC-ccCceeEEeeeecCeeEEEEEeC
Q 004094 214 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLIT-----KEHLGG-EIIPRSVLLCAFEGISYLLCALG 287 (774)
Q Consensus 214 l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~-----~~~l~~-~~~p~si~~~~~~~~~~L~vgl~ 287 (774)
....|.++++.+.. ...++.|.+ |++|.||++++..... ...+.. .....++.+.+. +...|+.|..
T Consensus 74 H~~~V~~v~fsP~d-----~~~LaSgS~-DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~-~~~iLaSgs~ 146 (493)
T PTZ00421 74 QEGPIIDVAFNPFD-----PQKLFTASE-DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS-AMNVLASAGA 146 (493)
T ss_pred CCCCEEEEEEcCCC-----CCEEEEEeC-CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC-CCCEEEEEeC
Confidence 45679999997532 457888888 9999999997532100 011211 011223333221 2357888999
Q ss_pred CCcEEEEEEec
Q 004094 288 DGHLLNFLLNM 298 (774)
Q Consensus 288 ~G~l~~y~~~~ 298 (774)
||.+..|.+..
T Consensus 147 DgtVrIWDl~t 157 (493)
T PTZ00421 147 DMVVNVWDVER 157 (493)
T ss_pred CCEEEEEECCC
Confidence 99999998764
No 85
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.95 E-value=3.3 Score=44.17 Aligned_cols=133 Identities=20% Similarity=0.203 Sum_probs=88.2
Q ss_pred eCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCC---
Q 004094 375 KEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF--- 451 (774)
Q Consensus 375 ~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~--- 451 (774)
.+..+++.+++...++..+ +-...+..++|..+ ..|+..+. .+.|.|.+-...+.+.++....+
T Consensus 306 rDrT~rlwKi~eesqlifr--g~~~sidcv~~In~-~HfvsGSd----------nG~IaLWs~~KKkplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 306 RDRTVRLWKIPEESQLIFR--GGEGSIDCVAFIND-EHFVSGSD----------NGSIALWSLLKKKPLFTSRLAHGVIP 372 (479)
T ss_pred ccceeEEEeccccceeeee--CCCCCeeeEEEecc-cceeeccC----------CceEEEeeecccCceeEeeccccccC
Confidence 5778888888765443322 23456777777644 33444432 25788888877777766554322
Q ss_pred c--------eEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC--eEEEEEEEeecCceeEeccc-cCe
Q 004094 452 E--------YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG--KLQLIAEKETKGAVYSLNAF-NGK 520 (774)
Q Consensus 452 E--------~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~--kl~~~~~~~~~g~v~~i~~~-~~~ 520 (774)
+ .++++..+ .+..+++-|. ..|.+.+|.+..+ .+.++++..+.|-|.+|+-. +|+
T Consensus 373 ~~~~~~~~~Witsla~i----~~sdL~asGS----------~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVI----PGSDLLASGS----------WSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGK 438 (479)
T ss_pred CccccccccceeeeEec----ccCceEEecC----------CCCceEEEEecCCccccceeeecccccEEEEEEEccCCC
Confidence 1 34454443 1244555444 5699999999966 79999999999999999944 555
Q ss_pred -EEEEECCEEEEEEe
Q 004094 521 -LLAAINQKIQLYKW 534 (774)
Q Consensus 521 -lv~~~g~~l~v~~~ 534 (774)
|++++|+.=++=+|
T Consensus 439 ~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 439 RIVAGIGKEHRLGRW 453 (479)
T ss_pred EEEEeccccccccee
Confidence 99999987665444
No 86
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=94.70 E-value=0.88 Score=44.41 Aligned_cols=145 Identities=19% Similarity=0.336 Sum_probs=91.7
Q ss_pred CceEEEEEeeeeCCCCCCCcceEEEEEEEe---------CCeEEEEEEEeecCceeEeccccCeEEEEECCEEEEEEeee
Q 004094 466 SNVYYCVGTAYVLPEENEPTKGRILVFIVE---------DGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWML 536 (774)
Q Consensus 466 ~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~---------~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g~~l~v~~~~~ 536 (774)
.++|+++|..+ |.|-+++++ .+|++++.+...+||+|.+...+..|+.|-...|+=+.|.+
T Consensus 21 ~~~~l~agn~~----------G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E 90 (325)
T KOG0649|consen 21 SKQYLFAGNLF----------GDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNE 90 (325)
T ss_pred cceEEEEecCC----------CeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehh
Confidence 47889988754 889999987 45888999889999999999999998888888888888864
Q ss_pred cC--CCchhhhhh-ccccc------ceEEEEEEEe-CCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEee
Q 004094 537 RD--DGTRELQSE-CGHHG------HILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD 606 (774)
Q Consensus 537 ~~--~~~~~l~~~-~~~~~------~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~ 606 (774)
.. ++.++|-.. .-++. -+.++.+.-. +..+++| =+++ ++.++-|++++...-|-.. -++-++ ...
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag--GD~~-~y~~dlE~G~i~r~~rGHt-DYvH~v-v~R 165 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG--GDGV-IYQVDLEDGRIQREYRGHT-DYVHSV-VGR 165 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec--CCeE-EEEEEecCCEEEEEEcCCc-ceeeee-eec
Confidence 22 233333221 11111 1124555533 4455555 3444 6788888888766654321 122111 111
Q ss_pred --CCeEEEEccCCcEEEEeeC
Q 004094 607 --DDIYLGAENNFNLFTVRKN 625 (774)
Q Consensus 607 --~~~~l~~D~~gnl~~l~~~ 625 (774)
...++.+-.||.+.+....
T Consensus 166 ~~~~qilsG~EDGtvRvWd~k 186 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTK 186 (325)
T ss_pred ccCcceeecCCCccEEEEecc
Confidence 1347777778888777653
No 87
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=94.68 E-value=0.67 Score=48.50 Aligned_cols=251 Identities=15% Similarity=0.175 Sum_probs=132.6
Q ss_pred CeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCeEEEecCCc-EEEeeecccCc
Q 004094 278 GISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKK-LLYSNVNLKEV 356 (774)
Q Consensus 278 ~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~~~~-~~~~~~~~~~i 356 (774)
+.-.|++|+.+|++.-++... +.+.-..+.-.+||+= +-...+..|++..+++. ++|...+...+
T Consensus 107 eGRRLltgs~SGEFtLWNg~~----fnFEtilQaHDs~Vr~----------m~ws~~g~wmiSgD~gG~iKyWqpnmnnV 172 (464)
T KOG0284|consen 107 EGRRLLTGSQSGEFTLWNGTS----FNFETILQAHDSPVRT----------MKWSHNGTWMISGDKGGMIKYWQPNMNNV 172 (464)
T ss_pred CCceeEeecccccEEEecCce----eeHHHHhhhhccccee----------EEEccCCCEEEEcCCCceEEecccchhhh
Confidence 345799999999998876421 1111112333455542 22233445566665543 55554443332
Q ss_pred eeeecccCCC------C-CC-cEE-EEeCCeEEEEEEcCCCCeEEEEE-eCCCcccEEEEecCCCEEEEEEeccCCCCCc
Q 004094 357 SHMCPFNSAA------F-PD-SLA-IAKEGELTIGTIDDIQKLHIRSI-PLGEHPRRICHQEQSRTFAICSLKNQSCAEE 426 (774)
Q Consensus 357 ~~~~~f~~~~------~-~~-~l~-~~~~~~l~i~~l~~~~~~~~~~i-~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~ 426 (774)
..+-.-+.++ . .| -|+ +.+++.++|...-... ..+.+ -=|..|+.+..||....++.+..++
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k--ee~vL~GHgwdVksvdWHP~kgLiasgskDn------ 244 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK--EERVLRGHGWDVKSVDWHPTKGLIASGSKDN------ 244 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc--hhheeccCCCCcceeccCCccceeEEccCCc------
Confidence 2211111110 0 12 244 4457888887664332 11222 1245688899999988877776543
Q ss_pred eeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEE-E
Q 004094 427 SEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAE-K 505 (774)
Q Consensus 427 ~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~-~ 505 (774)
-++|.||++.+.+.+.-- +=.++..++|..++ ++++-|.. | -.+.+|++. .++.+.. .
T Consensus 245 ----lVKlWDprSg~cl~tlh~----HKntVl~~~f~~n~-N~Llt~sk------D----~~~kv~DiR--~mkEl~~~r 303 (464)
T KOG0284|consen 245 ----LVKLWDPRSGSCLATLHG----HKNTVLAVKFNPNG-NWLLTGSK------D----QSCKVFDIR--TMKELFTYR 303 (464)
T ss_pred ----eeEeecCCCcchhhhhhh----ccceEEEEEEcCCC-CeeEEccC------C----ceEEEEehh--HhHHHHHhh
Confidence 899999999988765321 11345555666544 78876542 1 267788875 2332222 2
Q ss_pred eecCceeEe--ccccCeEEEEEC--CEEEEEEeeecCCCchhhhh-hcccccceEEEEEEE--eCCEEEEEeccccEEE
Q 004094 506 ETKGAVYSL--NAFNGKLLAAIN--QKIQLYKWMLRDDGTRELQS-ECGHHGHILALYVQT--RGDFIVVGDLMKSISL 577 (774)
Q Consensus 506 ~~~g~v~~i--~~~~~~lv~~~g--~~l~v~~~~~~~~~~~~l~~-~~~~~~~~~~~~l~~--~~~~I~vgD~~~Sv~~ 577 (774)
..+.-|+++ .+++..|+...| ..|+.|.+.. .+.+.. .-.++.. +-+|.. .|..+.-|+--+.+-|
T Consensus 304 ~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~----~~p~~~i~~AHd~~--iwsl~~hPlGhil~tgsnd~t~rf 376 (464)
T KOG0284|consen 304 GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL----EEPLGEIPPAHDGE--IWSLAYHPLGHILATGSNDRTVRF 376 (464)
T ss_pred cchhhheeeccccccccceeeccCCCceEEEeccc----cccccCCCcccccc--eeeeeccccceeEeecCCCcceee
Confidence 245566777 556666666555 5666666531 111111 1112222 334443 5666666777777644
No 88
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=2.7 Score=44.19 Aligned_cols=223 Identities=13% Similarity=0.141 Sum_probs=106.7
Q ss_pred eEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCC
Q 004094 235 IAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQ 314 (774)
Q Consensus 235 ~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~ 314 (774)
.+.++.- ++.|.|++++.-..+...... ..+-|.+.- +.+..+++.|+.+|.+++|.+...++.+... .-.+...
T Consensus 208 Ll~~asl-~nkiki~dlet~~~vssy~a~--~~~wSC~wD-lde~h~IYaGl~nG~VlvyD~R~~~~~~~e~-~a~~t~~ 282 (463)
T KOG1645|consen 208 LLGLASL-GNKIKIMDLETSCVVSSYIAY--NQIWSCCWD-LDERHVIYAGLQNGMVLVYDMRQPEGPLMEL-VANVTIN 282 (463)
T ss_pred eeeeecc-CceEEEEecccceeeeheecc--CCceeeeec-cCCcceeEEeccCceEEEEEccCCCchHhhh-hhhhccC
Confidence 3444444 889999999876555443333 345565543 3457889999999999999987554433211 0112233
Q ss_pred Ce-EEEEEE---eCCcceEEEecCCCeEEE---ecCCcE-EEeeecccCceeeecccCCCCCCcEEE-EeC------CeE
Q 004094 315 PI-TLRTFS---SKNTTHVFAASDRPTVIY---SSNKKL-LYSNVNLKEVSHMCPFNSAAFPDSLAI-AKE------GEL 379 (774)
Q Consensus 315 pv-~l~~~~---~~~~~~v~~~~~~p~~l~---~~~~~~-~~~~~~~~~i~~~~~f~~~~~~~~l~~-~~~------~~l 379 (774)
|| ++.+.. .....+++++...-+-.| .+.+.+ ...++..+.+ +..+...+..+.++. .+. ...
T Consensus 283 pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~--cismqy~~~snh~l~tyRs~pn~p~~r~ 360 (463)
T KOG1645|consen 283 PVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGI--CISMQYHGVSNHLLLTYRSNPNFPQSRF 360 (463)
T ss_pred cceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcc--eeeeeecCccceEEEEecCCCCCcccee
Confidence 43 333331 111223333322111111 111110 1111110000 000100111111111 111 011
Q ss_pred EEEEEcCCCC---eEEEEEeCCC--c---ccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCC
Q 004094 380 TIGTIDDIQK---LHIRSIPLGE--H---PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF 451 (774)
Q Consensus 380 ~i~~l~~~~~---~~~~~i~l~~--t---p~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~ 451 (774)
..++++...+ +..|..-.|. + -+.....++.+.++|...+ ....+.+.|+.+++.+.++.+.
T Consensus 361 il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd--------~tn~lil~D~~s~evvQ~l~~~-- 430 (463)
T KOG1645|consen 361 ILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD--------STNELILQDPHSFEVVQTLALS-- 430 (463)
T ss_pred eeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecC--------CcceeEEeccchhheeeecccC--
Confidence 1112322222 2222222221 1 1223344555677776654 2457999999999998887775
Q ss_pred ceEEEEEEEEEcCCCceEEEEEeee
Q 004094 452 EYGCSILSCSFSDDSNVYYCVGTAY 476 (774)
Q Consensus 452 E~~~si~~~~~~~~~~~~i~VGT~~ 476 (774)
|.+..++.+... +..|+++=|.+
T Consensus 431 epv~Dicp~~~n--~~syLa~LTd~ 453 (463)
T KOG1645|consen 431 EPVLDICPNDTN--GSSYLALLTDD 453 (463)
T ss_pred cceeecceeecC--Ccchhhheecc
Confidence 888888876553 57788877743
No 89
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.64 E-value=9.3 Score=42.61 Aligned_cols=203 Identities=12% Similarity=0.157 Sum_probs=106.6
Q ss_pred CceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEE
Q 004094 215 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNF 294 (774)
Q Consensus 215 ~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y 294 (774)
...|-|+++-| ...+++.+.+ +|.++||+-+++..+-...+. +.+.|+..++. .++++++|..|+++-+|
T Consensus 13 SdRVKsVd~HP------tePw~la~Ly-nG~V~IWnyetqtmVksfeV~-~~PvRa~kfia--RknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 13 SDRVKSVDFHP------TEPWILAALY-NGDVQIWNYETQTMVKSFEVS-EVPVRAAKFIA--RKNWIVTGSDDMQIRVF 82 (794)
T ss_pred CCceeeeecCC------CCceEEEeee-cCeeEEEecccceeeeeeeec-ccchhhheeee--ccceEEEecCCceEEEE
Confidence 45677888865 2578888999 999999999887776554443 23456655442 46899999999999999
Q ss_pred EEecCCCccccceeeecCCCCeEEEEEEeC-CcceEEEecCCCeEEEe-cCCcEEEeeecccCceeee--cccCCCCCCc
Q 004094 295 LLNMKTGELTDRKKVSLGTQPITLRTFSSK-NTTHVFAASDRPTVIYS-SNKKLLYSNVNLKEVSHMC--PFNSAAFPDS 370 (774)
Q Consensus 295 ~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~-~~~~v~~~~~~p~~l~~-~~~~~~~~~~~~~~i~~~~--~f~~~~~~~~ 370 (774)
+.+... |...+-..|=-++.+... ..+.++-.+|...+=.+ .++.........++-+.+- .| ++..++.
T Consensus 83 nynt~e------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f-nPkD~nt 155 (794)
T KOG0276|consen 83 NYNTGE------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF-NPKDPNT 155 (794)
T ss_pred ecccce------eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe-cCCCccc
Confidence 987532 111111111111111111 12233333333333221 1233322222222222222 13 2334456
Q ss_pred EEEEe-CCeEEEEEEcCCCCeEEEEEeC-CCcccEEEEecCC-CEEEEEEeccCCCCCceeeeEEEEEECCCceEEEE
Q 004094 371 LAIAK-EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQS-RTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 445 (774)
Q Consensus 371 l~~~~-~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~-~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~ 445 (774)
|+-++ +..+++.++.... +..++.= ..-+..|.|.+-. +-|++..++. ..+++.|-.|..++.+
T Consensus 156 FaS~sLDrTVKVWslgs~~--~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD---------~tiKvWDyQtk~CV~T 222 (794)
T KOG0276|consen 156 FASASLDRTVKVWSLGSPH--PNFTLEGHEKGVNCVDYYTGGDKPYLISGADD---------LTIKVWDYQTKSCVQT 222 (794)
T ss_pred eeeeeccccEEEEEcCCCC--CceeeeccccCcceEEeccCCCcceEEecCCC---------ceEEEeecchHHHHHH
Confidence 66555 7888888887542 1222221 1235567765533 2344433331 2677777766555443
No 90
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.51 E-value=8.7 Score=41.76 Aligned_cols=101 Identities=19% Similarity=0.186 Sum_probs=61.7
Q ss_pred EECCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeE-EEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEE
Q 004094 181 TANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS-CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITK 259 (774)
Q Consensus 181 ~~~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is-~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~ 259 (774)
.+.++.+++...++.+..|+..+|+. +.+..+...+. ...+ ....+++++. ++.+.-++..+.+++++
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~--~W~~~~~~~~~~~p~v--------~~~~v~v~~~-~g~l~ald~~tG~~~W~ 130 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKR--LWRVDLDERLSGGVGA--------DGGLVFVGTE-KGEVIALDAEDGKELWR 130 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcE--eeeecCCCCcccceEE--------cCCEEEEEcC-CCEEEEEECCCCcEeee
Confidence 34577777777677787776655543 34444444332 1222 1456778888 89999999888888876
Q ss_pred ecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEe
Q 004094 260 EHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLN 297 (774)
Q Consensus 260 ~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~ 297 (774)
..++... .+..+. ....++++..+|.|..+...
T Consensus 131 ~~~~~~~--~~~p~v---~~~~v~v~~~~g~l~a~d~~ 163 (377)
T TIGR03300 131 AKLSSEV--LSPPLV---ANGLVVVRTNDGRLTALDAA 163 (377)
T ss_pred eccCcee--ecCCEE---ECCEEEEECCCCeEEEEEcC
Confidence 6554321 111111 13468888999988776544
No 91
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=94.41 E-value=8.4 Score=41.14 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=51.2
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCC
Q 004094 404 ICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENE 483 (774)
Q Consensus 404 i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~ 483 (774)
++++++.+.+.|+......-........+.++|..+++.+.++.... .+..+. +..++++.+.+-..
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~--~~~~ia---vS~Dgkp~lyvtn~-------- 319 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH--EIDSIN---VSQDAKPLLYALST-------- 319 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC--ceeeEE---ECCCCCeEEEEeCC--------
Confidence 99999999888876442100000122479999999999999888753 444443 56666655554331
Q ss_pred CcceEEEEEEEeCC
Q 004094 484 PTKGRILVFIVEDG 497 (774)
Q Consensus 484 ~~~Grl~v~~i~~~ 497 (774)
..|.|.+++...+
T Consensus 320 -~s~~VsViD~~t~ 332 (352)
T TIGR02658 320 -GDKTLYIFDAETG 332 (352)
T ss_pred -CCCcEEEEECcCC
Confidence 3467888887654
No 92
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.38 E-value=5.1 Score=40.75 Aligned_cols=101 Identities=14% Similarity=0.244 Sum_probs=67.4
Q ss_pred eEEEEEEC------CCceEEEEEE-----CCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC-
Q 004094 430 HFVRLLDD------QTFEFISTYP-----LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG- 497 (774)
Q Consensus 430 ~~l~l~d~------~~~~~i~~~~-----~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~- 497 (774)
+.||+++. ..|.....+. ...++......+|...+...++|+||. +|+.+..+++++|+..++
T Consensus 136 G~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs-----~e~a~~~~~~~Iye~~e~~ 210 (361)
T KOG2445|consen 136 GILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGS-----DEDAPHLNKVKIYEYNENG 210 (361)
T ss_pred cEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEc-----ccCCccccceEEEEecCCc
Confidence 36777643 3455443222 235666677778886666789999998 456788899999998842
Q ss_pred -eEEEEEEE-eecCceeEeccc----cCe--EEEEECCEEEEEEee
Q 004094 498 -KLQLIAEK-ETKGAVYSLNAF----NGK--LLAAINQKIQLYKWM 535 (774)
Q Consensus 498 -kl~~~~~~-~~~g~v~~i~~~----~~~--lv~~~g~~l~v~~~~ 535 (774)
|+..+.+. ++..||++|+-- ..+ |.+|.+.-|+||.+.
T Consensus 211 rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~ 256 (361)
T KOG2445|consen 211 RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVK 256 (361)
T ss_pred ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEEe
Confidence 55555543 568899999743 223 445665559998864
No 93
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=94.32 E-value=3.9 Score=46.36 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=48.7
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCe--eEEecCCCccCceeE--Eee-eecCeeEEEEEeC
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNL--ITKEHLGGEIIPRSV--LLC-AFEGISYLLCALG 287 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~--~~~~~l~~~~~p~si--~~~-~~~~~~~L~vgl~ 287 (774)
.-..+|+|+++.+.+ .+.++.|++ +|.|.+|.+....- ...-.......+..+ .+- .-.....++.+..
T Consensus 240 ~~~s~v~~~~f~p~~-----p~ll~gG~y-~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss 313 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFD-----PNLLAGGCY-NGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS 313 (555)
T ss_pred ecCCceeEEEeccCC-----cceEEeecc-CceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec
Confidence 445788999998753 678888999 99999999865322 211011000111222 111 1112245788888
Q ss_pred CCcEEEEEEec
Q 004094 288 DGHLLNFLLNM 298 (774)
Q Consensus 288 ~G~l~~y~~~~ 298 (774)
||.+..++.+.
T Consensus 314 DG~i~~W~~~~ 324 (555)
T KOG1587|consen 314 DGSICSWDTDM 324 (555)
T ss_pred CCcEeeeeccc
Confidence 99999998764
No 94
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=7.2 Score=39.76 Aligned_cols=243 Identities=17% Similarity=0.229 Sum_probs=120.9
Q ss_pred cCcEEEEecCCCceeeeEeCCCCCcEEEEE-EC-CCEEEEEEc--CCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCC
Q 004094 152 SGSVRLVSSTSRELRNEWKSPPGYSVNVAT-AN-ASQVLLATG--GGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIG 227 (774)
Q Consensus 152 ~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~-~~-~~~lvv~~~--~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~ 227 (774)
.+.+++++...++.+....... ..+-.+. .. +..++-+.. +..+.||.+.+++....- .-....|..|+.+|..
T Consensus 35 dDsl~LYd~~~g~~~~ti~skk-yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF-~GH~~~V~sL~~sP~~ 112 (311)
T KOG1446|consen 35 DDSLRLYDSLSGKQVKTINSKK-YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYF-PGHKKRVNSLSVSPKD 112 (311)
T ss_pred CCeEEEEEcCCCceeeEeeccc-ccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEc-CCCCceEEEEEecCCC
Confidence 4478888877655554443322 2344444 33 344444433 457889887654443321 1245678899887742
Q ss_pred CCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeec-CeeEEEEEeCCCcEEEEEEecC-CCcccc
Q 004094 228 ENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFE-GISYLLCALGDGHLLNFLLNMK-TGELTD 305 (774)
Q Consensus 228 ~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~-~~~~L~vgl~~G~l~~y~~~~~-~~~l~~ 305 (774)
+. ++....|.++++|.+..-++...-.+. ++.+ ..+. +...+-++...+.+-.|.+..- .|.+.
T Consensus 113 ------d~-FlS~S~D~tvrLWDlR~~~cqg~l~~~----~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~- 178 (311)
T KOG1446|consen 113 ------DT-FLSSSLDKTVRLWDLRVKKCQGLLNLS----GRPI--AAFDPEGLIFALANGSELIKLYDLRSFDKGPFT- 178 (311)
T ss_pred ------Ce-EEecccCCeEEeeEecCCCCceEEecC----CCcc--eeECCCCcEEEEecCCCeEEEEEecccCCCCce-
Confidence 33 334444899999998743432222222 1222 1222 1233445666666666776432 12111
Q ss_pred ceeeecCCC-CeEEEEEE-eCCcceEEEecCCCeE--EEecCCcEEEeeecc----cCceeeecccCCCCCCc-EEEE--
Q 004094 306 RKKVSLGTQ-PITLRTFS-SKNTTHVFAASDRPTV--IYSSNKKLLYSNVNL----KEVSHMCPFNSAAFPDS-LAIA-- 374 (774)
Q Consensus 306 ~~~~~lG~~-pv~l~~~~-~~~~~~v~~~~~~p~~--l~~~~~~~~~~~~~~----~~i~~~~~f~~~~~~~~-l~~~-- 374 (774)
...++.. -.+-..++ ..++..++++.+..++ +-..+|.+. ..... ..+..-+.| .|++ |++.
T Consensus 179 --tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~-~tfs~~~~~~~~~~~a~f----tPds~Fvl~gs 251 (311)
T KOG1446|consen 179 --TFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVK-STFSGYPNAGNLPLSATF----TPDSKFVLSGS 251 (311)
T ss_pred --eEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEe-eeEeeccCCCCcceeEEE----CCCCcEEEEec
Confidence 1122211 11222111 1245577777666643 333344421 11111 111122222 2554 5544
Q ss_pred eCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEE
Q 004094 375 KEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICS 417 (774)
Q Consensus 375 ~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~ 417 (774)
.++.+.+..+.+..+...-+=|.+..++.+-|.|-.-.|+-++
T Consensus 252 ~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~ 294 (311)
T KOG1446|consen 252 DDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS 294 (311)
T ss_pred CCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC
Confidence 4689999999877666555555455555666776555555444
No 95
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=93.97 E-value=7.3 Score=38.77 Aligned_cols=221 Identities=15% Similarity=0.219 Sum_probs=112.1
Q ss_pred cCcEEEEecCCCceeeeEeCCCCCcEEEEE-ECCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCC
Q 004094 152 SGSVRLVSSTSRELRNEWKSPPGYSVNVAT-ANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENP 230 (774)
Q Consensus 152 ~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~-~~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~ 230 (774)
.+.||+.+...++.++.... .+..|..+- -++.++++...+..+.++...+ .......++..++--+...
T Consensus 86 dk~ir~wd~r~~k~~~~i~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~--~~~~~~~~~~~e~ne~~w~------ 156 (313)
T KOG1407|consen 86 DKTIRIWDIRSGKCTARIET-KGENINITWSPDGEYIAVGNKDDRITFIDART--YKIVNEEQFKFEVNEISWN------ 156 (313)
T ss_pred CceEEEEEeccCcEEEEeec-cCcceEEEEcCCCCEEEEecCcccEEEEEecc--cceeehhcccceeeeeeec------
Confidence 34566665544444444332 223343332 3344555555556666665432 2222334455555444443
Q ss_pred CCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeec-CeeEEEEEeCCCcEEEEEEecCCCccccceee
Q 004094 231 SYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFE-GISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309 (774)
Q Consensus 231 ~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~-~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~ 309 (774)
..+.+++.+...|.|+|++.|.|+++.. +. +.|.....+++. ..-|+-+|..|-.+-.|.+++ |...|..
T Consensus 157 -~~nd~Fflt~GlG~v~ILsypsLkpv~s--i~--AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E----LiC~R~i 227 (313)
T KOG1407|consen 157 -NSNDLFFLTNGLGCVEILSYPSLKPVQS--IK--AHPSNCICIEFDPDGRYFATGSADALVSLWDVDE----LICERCI 227 (313)
T ss_pred -CCCCEEEEecCCceEEEEeccccccccc--cc--cCCcceEEEEECCCCceEeeccccceeeccChhH----hhhheee
Confidence 1455677777679999999999988642 22 122211122332 456788898887666665543 3222222
Q ss_pred ecCCCCeEEEEEEeCCcceEEEecCCCeEEEecCCcEEEeeecccCceeeecccCCCCCCcEEEEeC-CeEEEEEEcCCC
Q 004094 310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKE-GELTIGTIDDIQ 388 (774)
Q Consensus 310 ~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~~~~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~~-~~l~i~~l~~~~ 388 (774)
.==.-||+-..|.. ++++ +..+++ --+-|+.+++..
T Consensus 228 sRldwpVRTlSFS~-------------------dg~~------------------------lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 228 SRLDWPVRTLSFSH-------------------DGRM------------------------LASASEDHFIDIAEVETGD 264 (313)
T ss_pred ccccCceEEEEecc-------------------Ccce------------------------eeccCccceEEeEecccCC
Confidence 11123443333321 1111 011111 112344444433
Q ss_pred CeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEE
Q 004094 389 KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLD 436 (774)
Q Consensus 389 ~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d 436 (774)
+ +..||-.+.--.++.||...+++-+|.+..+ +...+.+.++++-
T Consensus 265 ~--~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~-d~~reag~vKiFG 309 (313)
T KOG1407|consen 265 R--VWEIPCEGPTFTVAWHPKRPLLAYACDDKDG-DSNREAGTVKIFG 309 (313)
T ss_pred e--EEEeeccCCceeEEecCCCceeeEEecCCCC-ccccccceeEEec
Confidence 2 4456665656679999999999999988632 1112345666653
No 96
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.81 E-value=4.5 Score=42.40 Aligned_cols=91 Identities=23% Similarity=0.314 Sum_probs=65.7
Q ss_pred eeEEEEEECCCc-eEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEee
Q 004094 429 MHFVRLLDDQTF-EFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKET 507 (774)
Q Consensus 429 ~~~l~l~d~~~~-~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~ 507 (774)
.+.++++|+... +.+.++.|. |.+.+.. .+. .+.++|.+|. ++|.+-.|+...+++--..-..+
T Consensus 225 ~hqvR~YDt~~qRRPV~~fd~~--E~~is~~--~l~-p~gn~Iy~gn----------~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 225 YHQVRLYDTRHQRRPVAQFDFL--ENPISST--GLT-PSGNFIYTGN----------TKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred ceeEEEecCcccCcceeEeccc--cCcceee--eec-CCCcEEEEec----------ccchhheecccCceeeccccCCc
Confidence 468999999654 467777765 4443322 222 2467788887 56889999998878777767788
Q ss_pred cCceeEeccccC-eEEEEEC--CEEEEEEe
Q 004094 508 KGAVYSLNAFNG-KLLAAIN--QKIQLYKW 534 (774)
Q Consensus 508 ~g~v~~i~~~~~-~lv~~~g--~~l~v~~~ 534 (774)
.|.+.+|.-..+ .+++++| .-|+||+.
T Consensus 290 tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 290 TGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred cCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 999999998855 5777776 66788775
No 97
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=93.81 E-value=2.9 Score=41.09 Aligned_cols=142 Identities=12% Similarity=0.089 Sum_probs=88.7
Q ss_pred CCeEEE-EecCcEEEEecCCCceeeeEeCCCCCcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEE
Q 004094 144 YNQLVQ-VTSGSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISC 220 (774)
Q Consensus 144 ~~~~vQ-VT~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~ 220 (774)
+..|+- --.+.||+.+..++++++....+. .++.+.+. +..+.++. ++.+.|++.+ .|..+.+..++..|.+
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~ilTia~-gssV~Fwdak--sf~~lKs~k~P~nV~S 229 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRILTIAY-GSSVKFWDAK--SFGLLKSYKMPCNVES 229 (334)
T ss_pred CceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeeccCCCEEEEec-CceeEEeccc--cccceeeccCcccccc
Confidence 445555 446789999988888888776653 46677654 55666665 7778887653 4656667788888877
Q ss_pred EEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecC
Q 004094 221 LDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMK 299 (774)
Q Consensus 221 l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~ 299 (774)
-++.|- ..+++.|-- +..++-|...+.+.+....-.-..+.+.+.+.+ +...--.|+.||.+..|+..+.
T Consensus 230 ASL~P~------k~~fVaGge-d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP--dGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 230 ASLHPK------KEFFVAGGE-DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP--DGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred ccccCC------CceEEecCc-ceEEEEEeccCCceeeecccCCCCceEEEEECC--CCceeeccCCCceEEEEEecCC
Confidence 666541 244444555 777888887654433221111001234443332 3444567999999999998764
No 98
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.74 E-value=13 Score=40.77 Aligned_cols=140 Identities=14% Similarity=0.172 Sum_probs=75.4
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccC-----------CCCCcee-eeEEEEEECCCceEE
Q 004094 376 EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQ-----------SCAEESE-MHFVRLLDDQTFEFI 443 (774)
Q Consensus 376 ~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~-----------~~~~~~~-~~~l~l~d~~~~~~i 443 (774)
++.|.|.+=+.. ...+.+|----|-=++|.+.++.|+++.+... ..+.+.+ .....-.. ...+..
T Consensus 154 DG~L~~feqe~~--~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~-~~k~l~ 230 (418)
T PF14727_consen 154 DGSLSFFEQESF--AFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDIS-SGKKLN 230 (418)
T ss_pred CceEEEEeCCcE--EEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccccc-cccccc
Confidence 566666553321 22444444445666999999999999887631 0000000 00000000 011111
Q ss_pred EEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEecccc-----
Q 004094 444 STYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFN----- 518 (774)
Q Consensus 444 ~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~----- 518 (774)
..-.|.-+|.+..|..+.+.......+|.|.. .|++++- ++ ++.+.+..+..+.|++.|.
T Consensus 231 ~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger------------~Lf~l~~-~G--~l~~~krLd~~p~~~~~Y~~~~~~ 295 (418)
T PF14727_consen 231 PDWSFNLGEQALDIQVVRFSSSESDIVVLGER------------SLFCLKD-NG--SLRFQKRLDYNPSCFCPYRVPWYN 295 (418)
T ss_pred ceeEEECCceeEEEEEEEcCCCCceEEEEecc------------eEEEEcC-CC--eEEEEEecCCceeeEEEEEeeccc
Confidence 22345568999999998876544556666643 3334432 34 3344455577777777651
Q ss_pred --C----eEEEEECCEEEEEE
Q 004094 519 --G----KLLAAINQKIQLYK 533 (774)
Q Consensus 519 --~----~lv~~~g~~l~v~~ 533 (774)
+ .|+++..+.+.||+
T Consensus 296 ~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 296 EPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred CCCCceEEEEEecCCeEEEEe
Confidence 1 45666778999988
No 99
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=93.68 E-value=3.3 Score=41.96 Aligned_cols=230 Identities=14% Similarity=0.190 Sum_probs=114.0
Q ss_pred EEEEEECCC-EEEEEE-cCCeEEEEEEcCceEEE-EEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCC
Q 004094 177 VNVATANAS-QVLLAT-GGGHLVYLEIGDGILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD 253 (774)
Q Consensus 177 I~~a~~~~~-~lvv~~-~~~~~~~~~~~~~~l~~-~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~ 253 (774)
|......+. .++++- .++.+.+|.+.+..... ...++-...|-|+++-| ..++++||+. -..+++|++.+
T Consensus 175 vn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP------sGefllvgTd-Hp~~rlYdv~T 247 (430)
T KOG0640|consen 175 VNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP------SGEFLLVGTD-HPTLRLYDVNT 247 (430)
T ss_pred ccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC------CCceEEEecC-CCceeEEeccc
Confidence 444444432 444443 35778888765411100 01123346678998865 3689999998 88999999988
Q ss_pred CCeeEEecCCCccCceeEEeeeecCeeEEE-EEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEe
Q 004094 254 LNLITKEHLGGEIIPRSVLLCAFEGISYLL-CALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAA 332 (774)
Q Consensus 254 ~~~~~~~~l~~~~~p~si~~~~~~~~~~L~-vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~ 332 (774)
.++..... |.+....++.-+.....-.|+ -|..||.+-.|. ..++.....-...-|...|-=-.|. .+...++-.
T Consensus 248 ~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwD--GVS~rCv~t~~~AH~gsevcSa~Ft-kn~kyiLsS 323 (430)
T KOG0640|consen 248 YQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWD--GVSNRCVRTIGNAHGGSEVCSAVFT-KNGKYILSS 323 (430)
T ss_pred eeEeeecC-cccccccceeEEEecCCccEEEEeccCCcEEeec--cccHHHHHHHHhhcCCceeeeEEEc-cCCeEEeec
Confidence 76633211 322222233222222223344 489999988764 2222111000111122222111121 122334444
Q ss_pred cCCCeEEEec--CCc--EEEeeecc---cCceeeecccCCCCCCcEEEEeCCeEEEEEEcCCCCeEEEEEeCC--CcccE
Q 004094 333 SDRPTVIYSS--NKK--LLYSNVNL---KEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLG--EHPRR 403 (774)
Q Consensus 333 ~~~p~~l~~~--~~~--~~~~~~~~---~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~--~tp~~ 403 (774)
|.....-.+. .+| ..|..-.. +....-+.|+.. .+.+++.++..-.+|.-+....--....++| +.||-
T Consensus 324 G~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNht--EdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~ 401 (430)
T KOG0640|consen 324 GKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHT--EDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRW 401 (430)
T ss_pred CCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCc--cceEEccccccCceeeccccchhhhhhcccCCCCCceE
Confidence 4333222221 233 22322110 112233445431 3466777877777777666543344555665 45888
Q ss_pred EEEecCCCEEEEEEec
Q 004094 404 ICHQEQSRTFAICSLK 419 (774)
Q Consensus 404 i~y~~~~~~~~v~~~~ 419 (774)
|.++|....|..++.+
T Consensus 402 i~HSP~~p~FmTcsdD 417 (430)
T KOG0640|consen 402 IVHSPVEPAFMTCSDD 417 (430)
T ss_pred EEeCCCCCceeeeccc
Confidence 9999888777766544
No 100
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=93.59 E-value=4.2 Score=43.49 Aligned_cols=203 Identities=13% Similarity=0.102 Sum_probs=105.7
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEEEECCEEEEEEeeecC----CCc
Q 004094 467 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAINQKIQLYKWMLRD----DGT 541 (774)
Q Consensus 467 ~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~~g~~l~v~~~~~~~----~~~ 541 (774)
..|++.|| .+|.||+|++..++|-.+. ..+-.+|+++... +|..+++.|+.=.|+-|...+ +..
T Consensus 93 G~~l~ag~----------i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~ 161 (476)
T KOG0646|consen 93 GYFLLAGT----------ISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND 161 (476)
T ss_pred ceEEEeec----------ccCcEEEEEeccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC
Confidence 56666676 4699999999977643222 3456789999876 566777777654444443211 111
Q ss_pred hhhhhhcccccce-EEEEEEEe----CCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeC--CeEEEEc
Q 004094 542 RELQSECGHHGHI-LALYVQTR----GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDD--DIYLGAE 614 (774)
Q Consensus 542 ~~l~~~~~~~~~~-~~~~l~~~----~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~--~~~l~~D 614 (774)
....+.+.+..+. .++++.+- +.+++-.-.-+-+-++ +-..+.|..- =..|..++|+ .+|. ..+.++-
T Consensus 162 ~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~w--dlS~g~LLlt--i~fp~si~av-~lDpae~~~yiGt 236 (476)
T KOG0646|consen 162 HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLW--DLSLGVLLLT--ITFPSSIKAV-ALDPAERVVYIGT 236 (476)
T ss_pred CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEE--EeccceeeEE--EecCCcceeE-EEcccccEEEecC
Confidence 1122233333332 34555442 2366655555555543 3222332222 2233434433 2332 3455677
Q ss_pred cCCcEEEEeeCCCCCCcccc----cee--e--eEEEEEcC-cccceEEeeeeeecCCCCCCCCccEEEEEccccceEEEE
Q 004094 615 NNFNLFTVRKNSEGATDEER----GRL--E--VVGEYHLG-EFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIA 685 (774)
Q Consensus 615 ~~gnl~~l~~~~~~~~~~~~----~~L--~--~~~~f~lg-~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gsi~~i~ 685 (774)
.+|+|++..+..-...+.+- .-. . +...=|-+ ..|+++.- ..+..-++-|..||.+-.--
T Consensus 237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai-----------s~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI-----------STDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE-----------ecCccEEEeeCCCCCEEEEe
Confidence 99999999986544322210 000 0 11111222 34444432 23456788888899888776
Q ss_pred ecChhHHHHHH
Q 004094 686 SLPHEQYLFLE 696 (774)
Q Consensus 686 ~l~~~~~~~L~ 696 (774)
+-+.+..|.|.
T Consensus 306 i~S~Q~iRtl~ 316 (476)
T KOG0646|consen 306 IYSKQCIRTLQ 316 (476)
T ss_pred cchHHHHHHHh
Confidence 66776655554
No 101
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.56 E-value=9.9 Score=38.93 Aligned_cols=227 Identities=19% Similarity=0.266 Sum_probs=115.9
Q ss_pred CCeEEEEEecCCCC-----cEEEEecCCceeEEEeeeCC-CcceeeeeecCCCCCCceEEEEEecCceEEEEecCCC---
Q 004094 50 QGQVVTCSGAYKDG-----SLRIVRNGIGINEQASVELQ-GIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLED--- 120 (774)
Q Consensus 50 ~~~l~~~sG~g~~g-----~L~~lr~gi~~~~~~~~~l~-~~~~iw~~~~~~~~~~~~~li~S~~~~T~vl~~~~~~--- 120 (774)
+..+++..|.|+++ ++-+.- -..-+.+.++++. .|+.+..- +..|++-.++.-.|+++..+-
T Consensus 57 R~N~laLVGGg~~pky~pNkviIWD-D~k~~~i~el~f~~~I~~V~l~--------r~riVvvl~~~I~VytF~~n~k~l 127 (346)
T KOG2111|consen 57 RSNYLALVGGGSRPKYPPNKVIIWD-DLKERCIIELSFNSEIKAVKLR--------RDRIVVVLENKIYVYTFPDNPKLL 127 (346)
T ss_pred hhceEEEecCCCCCCCCCceEEEEe-cccCcEEEEEEeccceeeEEEc--------CCeEEEEecCeEEEEEcCCChhhe
Confidence 34678888877754 233333 2333333344443 34443322 234777777777788876431
Q ss_pred -Ceeeee-ecCccccC----cceeeeecCCCeEEEEecCcEEEEecCCCce--eeeEeCCCCCcEEEEEEC--CCEEEEE
Q 004094 121 -ELEETE-IEGFCSQT----QTLFCHDAIYNQLVQVTSGSVRLVSSTSREL--RNEWKSPPGYSVNVATAN--ASQVLLA 190 (774)
Q Consensus 121 -~~~e~~-~~~f~~~~----~Tl~~~~~~~~~~vQVT~~~i~l~~~~~~~~--~~~~~~~~~~~I~~a~~~--~~~lvv~ 190 (774)
.++... ..|...-. .++.|..-.. ...|.+.+...... -..+. .....|.+.+.+ +..+.-+
T Consensus 128 ~~~et~~NPkGlC~~~~~~~k~~LafPg~k-------~GqvQi~dL~~~~~~~p~~I~-AH~s~Iacv~Ln~~Gt~vATa 199 (346)
T KOG2111|consen 128 HVIETRSNPKGLCSLCPTSNKSLLAFPGFK-------TGQVQIVDLASTKPNAPSIIN-AHDSDIACVALNLQGTLVATA 199 (346)
T ss_pred eeeecccCCCceEeecCCCCceEEEcCCCc-------cceEEEEEhhhcCcCCceEEE-cccCceeEEEEcCCccEEEEe
Confidence 122112 23443222 2222211111 12334444332111 01111 233568777766 4455555
Q ss_pred EcCCeEE-EEEEcCc-eEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCe--e--EEecCCC
Q 004094 191 TGGGHLV-YLEIGDG-ILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNL--I--TKEHLGG 264 (774)
Q Consensus 191 ~~~~~~~-~~~~~~~-~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~--~--~~~~l~~ 264 (774)
...|.++ .|...+| .+.|..+=.-.++|-||+|++ .+.+++|+.. -|+++||+|.+-.. - +..++..
T Consensus 200 StkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp------~~s~LavsSd-KgTlHiF~l~~~~~~~~~~SSl~~~~ 272 (346)
T KOG2111|consen 200 STKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP------NSSWLAVSSD-KGTLHIFSLRDTENTEDESSSLSFKR 272 (346)
T ss_pred ccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC------CccEEEEEcC-CCeEEEEEeecCCCCccccccccccc
Confidence 4455554 4444444 466665444557899999976 3678888877 89999999965221 1 1111100
Q ss_pred ccCce----------------eEEeeeecCe-eEEEEEeCCCcEEEEEEecCC
Q 004094 265 EIIPR----------------SVLLCAFEGI-SYLLCALGDGHLLNFLLNMKT 300 (774)
Q Consensus 265 ~~~p~----------------si~~~~~~~~-~~L~vgl~~G~l~~y~~~~~~ 300 (774)
...|+ +.+++.++.+ +.+++-..||....|.+++.+
T Consensus 273 ~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~~ 325 (346)
T KOG2111|consen 273 LVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFDPKN 325 (346)
T ss_pred cccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEecccc
Confidence 01121 2234455544 556666678999999998764
No 102
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=93.55 E-value=13 Score=40.28 Aligned_cols=198 Identities=17% Similarity=0.188 Sum_probs=106.8
Q ss_pred cceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecC
Q 004094 233 SQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLG 312 (774)
Q Consensus 233 ~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG 312 (774)
.+.++|..-.+|++.+++..+.+.+........ .+.++.+. .+..++++..+||.+..+.+. +++ ..+.++.|
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s--~Dgr~~yv~~rdg~vsviD~~--~~~--~v~~i~~G 77 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGA-PHAGLKFS--PDGRYLYVANRDGTVSVIDLA--TGK--VVATIKVG 77 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STT-EEEEEE-T--T-SSEEEEEETTSEEEEEETT--SSS--EEEEEE-S
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCC-ceeEEEec--CCCCEEEEEcCCCeEEEEECC--ccc--EEEEEecC
Confidence 466777777689999999988887765433221 22233222 234578888899987765543 333 34567788
Q ss_pred CCCeEEEEEEeCCcceEEEecCC-CeEEEec-C-Cc-EEEeeecccCc----eeeecccCCCCCCcEEEEe--CCeEEEE
Q 004094 313 TQPITLRTFSSKNTTHVFAASDR-PTVIYSS-N-KK-LLYSNVNLKEV----SHMCPFNSAAFPDSLAIAK--EGELTIG 382 (774)
Q Consensus 313 ~~pv~l~~~~~~~~~~v~~~~~~-p~~l~~~-~-~~-~~~~~~~~~~i----~~~~~f~~~~~~~~l~~~~--~~~l~i~ 382 (774)
..|..+. +. .+...+++.+.. +.+...+ + .+ ++..|....+. ..++.+-.......++++- .+++.+.
T Consensus 78 ~~~~~i~-~s-~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 78 GNPRGIA-VS-PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp SEEEEEE-E---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred CCcceEE-Ec-CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence 8886543 22 244567766533 3333222 2 11 23223221110 0111111111223456553 3566555
Q ss_pred EEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEEC
Q 004094 383 TIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPL 448 (774)
Q Consensus 383 ~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~ 448 (774)
...+...+.++.++.+..|+-..++|..+.|+++.... ..+-++|.++.+.+...+.
T Consensus 156 dy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s---------n~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 156 DYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS---------NKIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp ETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG---------TEEEEEETTTTEEEEEEE-
T ss_pred EeccccccceeeecccccccccccCcccceeeeccccc---------ceeEEEeeccceEEEEeec
Confidence 54555678889999999999999999988887765442 2677888887766554443
No 103
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=93.52 E-value=2.1 Score=47.12 Aligned_cols=183 Identities=15% Similarity=0.215 Sum_probs=104.2
Q ss_pred eCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCce---------EEEE
Q 004094 375 KEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFE---------FIST 445 (774)
Q Consensus 375 ~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~---------~i~~ 445 (774)
+.+.++|..+-+. -.+|++.+++..+.|++.|..+.-+++.+-.+ ++.+++|.-+. .+.+
T Consensus 420 dDGtvriWEi~Tg--Rcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~---------~~~ivnp~~G~~~e~~~t~ell~~ 488 (733)
T KOG0650|consen 420 DDGTVRIWEIATG--RCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGE---------CVLIVNPIFGDRLEVGPTKELLAS 488 (733)
T ss_pred CCCcEEEEEeecc--eEEEEEeecceeEEEEecCCCCceeEEEEecC---------ceEEeCccccchhhhcchhhhhhc
Confidence 3577888888764 46889999999999999998876666544321 24444442211 1111
Q ss_pred E----------------ECCCCceEEEEEEEEEcC-------CCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEE
Q 004094 446 Y----------------PLDTFEYGCSILSCSFSD-------DSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLI 502 (774)
Q Consensus 446 ~----------------~~~~~E~~~si~~~~~~~-------~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~ 502 (774)
. ..++.|.-.|+.+...+. .+..||++-... ...-++++.++.+++-+ .
T Consensus 489 ~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~-------~~~~~VliHQLSK~~sQ-~ 560 (733)
T KOG0650|consen 489 APNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD-------SGNKSVLIHQLSKRKSQ-S 560 (733)
T ss_pred CCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC-------CCcceEEEEeccccccc-C
Confidence 1 111122222332222211 124566654321 12347888887765433 2
Q ss_pred EEEeecCceeEecc--ccCeEEEEECCEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEeccccEEEEEE
Q 004094 503 AEKETKGAVYSLNA--FNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIY 580 (774)
Q Consensus 503 ~~~~~~g~v~~i~~--~~~~lv~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~ 580 (774)
.-..-+|-|.++.- ...++++|.-..|++|++..+. -.++|...+.+. ..+++...|+-+++|..-+-+..+-.
T Consensus 561 PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqe-lvKkL~tg~kwi---S~msihp~GDnli~gs~d~k~~WfDl 636 (733)
T KOG0650|consen 561 PFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQE-LVKKLLTGSKWI---SSMSIHPNGDNLILGSYDKKMCWFDL 636 (733)
T ss_pred chhhcCCceeEEEecCCCceEEEEeccceEEEehhHHH-HHHHHhcCCeee---eeeeecCCCCeEEEecCCCeeEEEEc
Confidence 22244777777663 3678999999999999975321 224444444432 23445667788889888888655433
No 104
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=93.41 E-value=10 Score=38.73 Aligned_cols=250 Identities=16% Similarity=0.196 Sum_probs=118.1
Q ss_pred CCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCC---CeeEEecCCCccCceeEEeeeec---CeeEEEEEeC
Q 004094 214 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDL---NLITKEHLGGEIIPRSVLLCAFE---GISYLLCALG 287 (774)
Q Consensus 214 l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~---~~~~~~~l~~~~~p~si~~~~~~---~~~~L~vgl~ 287 (774)
....++|+|++ ..+++-|.. |-+|+||+++.- ..+... ..++-.+.+. +..+|+.|..
T Consensus 42 H~~sitavAVs--------~~~~aSGss-DetI~IYDm~k~~qlg~ll~H-------agsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 42 HAGSITALAVS--------GPYVASGSS-DETIHIYDMRKRKQLGILLSH-------AGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred cccceeEEEec--------ceeEeccCC-CCcEEEEeccchhhhcceecc-------ccceEEEEecCCcchhheeeecC
Confidence 35678899884 466666655 889999999862 222110 1111111121 2348999999
Q ss_pred CCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCeEEEec--CCcEEE-eeecccCceeeecccC
Q 004094 288 DGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSS--NKKLLY-SNVNLKEVSHMCPFNS 364 (774)
Q Consensus 288 ~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~--~~~~~~-~~~~~~~i~~~~~f~~ 364 (774)
||.++.|+..+ ..+ .+...--...|....+.- .+.-.+..|..-.+=.++ ++|..| .++. .......|.
T Consensus 106 DG~i~iw~~~~--W~~--~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~--~~at~v~w~- 177 (362)
T KOG0294|consen 106 DGHIIIWRVGS--WEL--LKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLK--NKATLVSWS- 177 (362)
T ss_pred CCcEEEEEcCC--eEE--eeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccC--CcceeeEEc-
Confidence 99999998653 111 111111111122222211 112222223222221111 233211 1221 111122232
Q ss_pred CCCCCcEEEEeCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEE
Q 004094 365 AAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIS 444 (774)
Q Consensus 365 ~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~ 444 (774)
.-.+.|++...+.+-|.+++...-+ +.+....-+..+.+. +.+.++|+... ..+++.|..+...
T Consensus 178 -~~Gd~F~v~~~~~i~i~q~d~A~v~--~~i~~~~r~l~~~~l-~~~~L~vG~d~----------~~i~~~D~ds~~~-- 241 (362)
T KOG0294|consen 178 -PQGDHFVVSGRNKIDIYQLDNASVF--REIENPKRILCATFL-DGSELLVGGDN----------EWISLKDTDSDTP-- 241 (362)
T ss_pred -CCCCEEEEEeccEEEEEecccHhHh--hhhhccccceeeeec-CCceEEEecCC----------ceEEEeccCCCcc--
Confidence 1234688888999999999875311 111111112223333 33444444432 2677888766332
Q ss_pred EEECCCCc-eEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe---CCeEEEEEEEeecCceeEec
Q 004094 445 TYPLDTFE-YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE---DGKLQLIAEKETKGAVYSLN 515 (774)
Q Consensus 445 ~~~~~~~E-~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~---~~kl~~~~~~~~~g~v~~i~ 515 (774)
-.+|..+| +|-++... .++...|| +|+- +-|.|.+|+++ +.+-+++.........+|+.
T Consensus 242 ~~~~~AH~~RVK~i~~~--~~~~~~~l--vTaS--------SDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~ 304 (362)
T KOG0294|consen 242 LTEFLAHENRVKDIASY--TNPEHEYL--VTAS--------SDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLR 304 (362)
T ss_pred ceeeecchhheeeeEEE--ecCCceEE--EEec--------cCceEEEEEccccccCCcceeEEeecCCccceee
Confidence 23444444 34455433 22223333 3442 45999999987 22345666655555555544
No 105
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=93.38 E-value=13 Score=39.95 Aligned_cols=245 Identities=19% Similarity=0.262 Sum_probs=131.9
Q ss_pred CCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCe-eEEecCCCccCceeEEeeee-cCeeEEEEEeCCCcE
Q 004094 214 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNL-ITKEHLGGEIIPRSVLLCAF-EGISYLLCALGDGHL 291 (774)
Q Consensus 214 l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~-~~~~~l~~~~~p~si~~~~~-~~~~~L~vgl~~G~l 291 (774)
-..+|+|++.+. ....++.|.. +|.++||+.+.-.+ ...++-. +.-++ .. +..+||+.|..||..
T Consensus 234 ~nkdVT~L~Wn~------~G~~LatG~~-~G~~riw~~~G~l~~tl~~Hkg---PI~sl---KWnk~G~yilS~~vD~tt 300 (524)
T KOG0273|consen 234 SNKDVTSLDWNN------DGTLLATGSE-DGEARIWNKDGNLISTLGQHKG---PIFSL---KWNKKGTYILSGGVDGTT 300 (524)
T ss_pred ccCCcceEEecC------CCCeEEEeec-CcEEEEEecCchhhhhhhccCC---ceEEE---EEcCCCCEEEeccCCccE
Confidence 347899999854 2678999999 99999999876222 1111111 11122 22 356899999999999
Q ss_pred EEEEEecCCCccccceeeecCCCC-eEEEEEEeCCcceEEEecCCC--eEEEec---CCcEEEeeecccCceeeecccCC
Q 004094 292 LNFLLNMKTGELTDRKKVSLGTQP-ITLRTFSSKNTTHVFAASDRP--TVIYSS---NKKLLYSNVNLKEVSHMCPFNSA 365 (774)
Q Consensus 292 ~~y~~~~~~~~l~~~~~~~lG~~p-v~l~~~~~~~~~~v~~~~~~p--~~l~~~---~~~~~~~~~~~~~i~~~~~f~~~ 365 (774)
+.|.... |..... ..+-..| +-+- -. .+.-|++++.- ..++.- .+.-.+.. +.++|.++ .|
T Consensus 301 ilwd~~~--g~~~q~--f~~~s~~~lDVd--W~--~~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~al-k~--- 367 (524)
T KOG0273|consen 301 ILWDAHT--GTVKQQ--FEFHSAPALDVD--WQ--SNDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNAL-KW--- 367 (524)
T ss_pred EEEeccC--ceEEEe--eeeccCCccceE--Ee--cCceEeecCCCceEEEEEecCCCcceeeec-ccCceEEE-EE---
Confidence 9876543 332221 1122333 1110 00 12234444332 222211 11112211 22233221 12
Q ss_pred CCCCc-EEE--EeCCeEEEEEEcCCCC-----------eEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeE
Q 004094 366 AFPDS-LAI--AKEGELTIGTIDDIQK-----------LHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHF 431 (774)
Q Consensus 366 ~~~~~-l~~--~~~~~l~i~~l~~~~~-----------~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~ 431 (774)
+|.+ |+. .+++.|+|..+..... +.++..|.+. +.-+|..+..++.++. .+.
T Consensus 368 -n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~----v~~n~~~~~~l~sas~---------dst 433 (524)
T KOG0273|consen 368 -NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP----VTSNPNMNLMLASASF---------DST 433 (524)
T ss_pred -CCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC----ccCCCcCCceEEEeec---------CCe
Confidence 2333 332 2478999999866531 2344444432 3345555665555544 268
Q ss_pred EEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCce
Q 004094 432 VRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAV 511 (774)
Q Consensus 432 l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v 511 (774)
+++.|......+.++. +..|-+++++ |. ....|++-|. ..|++.+|.+.-+++ +++..-.|.|
T Consensus 434 V~lwdv~~gv~i~~f~-kH~~pVysva---fS-~~g~ylAsGs----------~dg~V~iws~~~~~l--~~s~~~~~~I 496 (524)
T KOG0273|consen 434 VKLWDVESGVPIHTLM-KHQEPVYSVA---FS-PNGRYLASGS----------LDGCVHIWSTKTGKL--VKSYQGTGGI 496 (524)
T ss_pred EEEEEccCCceeEeec-cCCCceEEEE---ec-CCCcEEEecC----------CCCeeEeccccchhe--eEeecCCCeE
Confidence 9999998887776532 4567777765 33 3467888775 458999998754443 3333335555
Q ss_pred eEec
Q 004094 512 YSLN 515 (774)
Q Consensus 512 ~~i~ 515 (774)
..+|
T Consensus 497 fel~ 500 (524)
T KOG0273|consen 497 FELC 500 (524)
T ss_pred EEEE
Confidence 5555
No 106
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=93.31 E-value=9.7 Score=38.11 Aligned_cols=257 Identities=14% Similarity=0.159 Sum_probs=140.8
Q ss_pred CCeEEEEEEcCCCCeEEEEEe---CCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEEC--CCceEEEEEECCC
Q 004094 376 EGELTIGTIDDIQKLHIRSIP---LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDD--QTFEFISTYPLDT 450 (774)
Q Consensus 376 ~~~l~i~~l~~~~~~~~~~i~---l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~--~~~~~i~~~~~~~ 450 (774)
+..++|........|.-|.+- =.+++|+++.+|..+.++.++.+. .+.+... ..|+.++.+|=.+
T Consensus 36 Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~----------t~~Iw~k~~~efecv~~lEGHE 105 (312)
T KOG0645|consen 36 DKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA----------TVVIWKKEDGEFECVATLEGHE 105 (312)
T ss_pred CceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc----------eEEEeecCCCceeEEeeeeccc
Confidence 566777777654456666554 236889999999999888887763 3333322 4688889888888
Q ss_pred CceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe-CCeEEEEE-----EEeecCceeEeccccCeEE-E
Q 004094 451 FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE-DGKLQLIA-----EKETKGAVYSLNAFNGKLL-A 523 (774)
Q Consensus 451 ~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~-~~kl~~~~-----~~~~~g~v~~i~~~~~~lv-~ 523 (774)
+|. +.+.+.. ...|++.++- .-.+.++++. +..++... ..+++..+ -.+-.+.|+ +
T Consensus 106 nEV----K~Vaws~-sG~~LATCSR----------DKSVWiWe~deddEfec~aVL~~HtqDVK~V~--WHPt~dlL~S~ 168 (312)
T KOG0645|consen 106 NEV----KCVAWSA-SGNYLATCSR----------DKSVWIWEIDEDDEFECIAVLQEHTQDVKHVI--WHPTEDLLFSC 168 (312)
T ss_pred cce----eEEEEcC-CCCEEEEeeC----------CCeEEEEEecCCCcEEEEeeeccccccccEEE--EcCCcceeEEe
Confidence 884 3334443 4678886652 2378899987 33444333 22223221 111134444 3
Q ss_pred EECCEEEEEEeeecCCCchhhhhhcccccc---eEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeE
Q 004094 524 AINQKIQLYKWMLRDDGTRELQSECGHHGH---ILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 600 (774)
Q Consensus 524 ~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~---~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~ 600 (774)
+..++|.+|+-.. ++.++++. .+..+ +..+...-.|++++.++--.-+.+.++-.. + ...+.+.+.
T Consensus 169 SYDnTIk~~~~~~--dddW~c~~--tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~------~-~~~~sr~~Y 237 (312)
T KOG0645|consen 169 SYDNTIKVYRDED--DDDWECVQ--TLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD------L-SGMHSRALY 237 (312)
T ss_pred ccCCeEEEEeecC--CCCeeEEE--EecCccceEEEEEecCCCceEEEecCCcceEeeeeccC------c-chhcccceE
Confidence 4468999988532 33444432 22333 223333445678777777766777663311 1 122334443
Q ss_pred EEEEeeCCeEEEEccCCcEEEEeeCCCCCCccccceeee-EEEEEcCcccceEEeeeeeecCCCCCCCCccEEEEEcccc
Q 004094 601 AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEV-VGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNG 679 (774)
Q Consensus 601 ~~~~l~~~~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~-~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~~G 679 (774)
.+.- ..+.+..+-.++-|.+|+....+... .-.+.. .... .+..||+++-. +.....++.++-||
T Consensus 238 ~v~W-~~~~IaS~ggD~~i~lf~~s~~~d~p--~~~l~~~~~~a-He~dVNsV~w~----------p~~~~~L~s~~DDG 303 (312)
T KOG0645|consen 238 DVPW-DNGVIASGGGDDAIRLFKESDSPDEP--SWNLLAKKEGA-HEVDVNSVQWN----------PKVSNRLASGGDDG 303 (312)
T ss_pred eeee-cccceEeccCCCEEEEEEecCCCCCc--hHHHHHhhhcc-cccccceEEEc----------CCCCCceeecCCCc
Confidence 3322 23456555668888888876322111 111211 1122 23467776531 12245677778887
Q ss_pred ceEEE
Q 004094 680 VIGVI 684 (774)
Q Consensus 680 si~~i 684 (774)
.+-..
T Consensus 304 ~v~~W 308 (312)
T KOG0645|consen 304 IVNFW 308 (312)
T ss_pred eEEEE
Confidence 76543
No 107
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=93.09 E-value=16 Score=40.01 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=61.6
Q ss_pred EECCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeC---CCCCCC-CCcceEEEEEecCCEEEEEECCCCCe
Q 004094 181 TANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDIN---PIGENP-SYSQIAAVGMWTDISVRIFSLPDLNL 256 (774)
Q Consensus 181 ~~~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~---~~~~~~-~~~~~~~vg~~~~~~i~i~~l~~~~~ 256 (774)
++.++.+.+...++.+..|+..+|+. +++.++..+..-+.-. ....+. .....++++.. ++.+.-++..+.++
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-~g~l~ald~~tG~~ 142 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKE--IWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-KGQVYALNAEDGEV 142 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcE--eeEEcCCCcccccccccccccccccEEECCEEEEEcC-CCEEEEEECCCCCC
Confidence 34577777777677887777665543 3333333210000000 000000 01356777777 88888888888888
Q ss_pred eEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCcc
Q 004094 257 ITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGEL 303 (774)
Q Consensus 257 ~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l 303 (774)
+++..++.... .+-++. ...++++..+|.|..++. .+|+.
T Consensus 143 ~W~~~~~~~~~-ssP~v~----~~~v~v~~~~g~l~ald~--~tG~~ 182 (394)
T PRK11138 143 AWQTKVAGEAL-SRPVVS----DGLVLVHTSNGMLQALNE--SDGAV 182 (394)
T ss_pred cccccCCCcee-cCCEEE----CCEEEEECCCCEEEEEEc--cCCCE
Confidence 87766653211 111121 346888999998776554 44553
No 108
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=93.09 E-value=15 Score=40.11 Aligned_cols=292 Identities=12% Similarity=0.135 Sum_probs=143.6
Q ss_pred eeEeCCCCCcEEEEE-ECCC-EEEEE-EcCCeEEEEEEcC--c---eEEEEEeccCCceeEEEEeCCCCCCCCCcceEEE
Q 004094 167 NEWKSPPGYSVNVAT-ANAS-QVLLA-TGGGHLVYLEIGD--G---ILTEVKHAQLEYEISCLDINPIGENPSYSQIAAV 238 (774)
Q Consensus 167 ~~~~~~~~~~I~~a~-~~~~-~lvv~-~~~~~~~~~~~~~--~---~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~v 238 (774)
++...+.|..|+.|- +++. .=+++ .-++.+.++.+.. . .+.++.+ .-.+.|-++..++. .+.++|
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P-~E~h~i~sl~ys~T------g~~iLv 231 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP-CETHQINSLQYSVT------GDQILV 231 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc-ccccccceeeecCC------CCeEEE
Confidence 455556677777664 6633 22222 2245666665532 1 1222211 11355666666542 334444
Q ss_pred EEecCCEEEEEECCCCCeeEE----e---cCCC--ccC--ceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccce
Q 004094 239 GMWTDISVRIFSLPDLNLITK----E---HLGG--EII--PRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRK 307 (774)
Q Consensus 239 g~~~~~~i~i~~l~~~~~~~~----~---~l~~--~~~--p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~ 307 (774)
..- +....+|.-..++++-. + .+.. ..+ -.+.+-.+.. +...+-...||.|-.|+++....++...|
T Consensus 232 vsg-~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~-k~~FlT~s~DgtlRiWdv~~~k~q~qVik 309 (641)
T KOG0772|consen 232 VSG-SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN-KEEFLTCSYDGTLRIWDVNNTKSQLQVIK 309 (641)
T ss_pred Eec-CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc-ccceEEecCCCcEEEEecCCchhheeEEe
Confidence 333 55677777766655421 1 1110 000 1111222222 33344555799999999875433343334
Q ss_pred eeecCCC--CeEEEEEEeCCcceEEEecCCCeEEEecCCc------EEEeeecc--cCceeeecccCCCCCCc-EEEEe-
Q 004094 308 KVSLGTQ--PITLRTFSSKNTTHVFAASDRPTVIYSSNKK------LLYSNVNL--KEVSHMCPFNSAAFPDS-LAIAK- 375 (774)
Q Consensus 308 ~~~lG~~--pv~l~~~~~~~~~~v~~~~~~p~~l~~~~~~------~~~~~~~~--~~i~~~~~f~~~~~~~~-l~~~~- 375 (774)
.+..|.. |+.-+.++-++ .-+-+.|..-.+-.+..+. +.+..-+. ..|.+++ |.. ++ .++.+
T Consensus 310 ~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~-FS~----dg~~LlSRg 383 (641)
T KOG0772|consen 310 TKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSIS-FSY----DGNYLLSRG 383 (641)
T ss_pred eccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEE-ecc----ccchhhhcc
Confidence 4444433 44434433222 2222222222222222121 22221111 1343332 321 22 23333
Q ss_pred -CCeEEEEEEcCCCC-eEEEE-EeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCc
Q 004094 376 -EGELTIGTIDDIQK-LHIRS-IPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 452 (774)
Q Consensus 376 -~~~l~i~~l~~~~~-~~~~~-i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E 452 (774)
++.|++..|...++ ++++. ++....-.-.+|+|.-++++..++-.. ......|.|+|+.+++.+..+.+....
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~----~~~~g~L~f~d~~t~d~v~ki~i~~aS 459 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPN----GMTAGTLFFFDRMTLDTVYKIDISTAS 459 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccC----CCCCceEEEEeccceeeEEEecCCCce
Confidence 68899999988764 33332 222223345789998887777766531 112347999999999999998887332
Q ss_pred eEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEE
Q 004094 453 YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVF 492 (774)
Q Consensus 453 ~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~ 492 (774)
.+- +.|.- +-+-|.+|++. |-+++|
T Consensus 460 vv~--~~Whp---kLNQi~~gsgd----------G~~~vy 484 (641)
T KOG0772|consen 460 VVR--CLWHP---KLNQIFAGSGD----------GTAHVY 484 (641)
T ss_pred EEE--Eeecc---hhhheeeecCC----------CceEEE
Confidence 222 33532 34567788853 666666
No 109
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.08 E-value=18 Score=43.18 Aligned_cols=224 Identities=11% Similarity=0.131 Sum_probs=133.8
Q ss_pred cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEEC--CCCceEEEEEEEEEcCCCceEEEEEeeee
Q 004094 400 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPL--DTFEYGCSILSCSFSDDSNVYYCVGTAYV 477 (774)
Q Consensus 400 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~--~~~E~~~si~~~~~~~~~~~~i~VGT~~~ 477 (774)
.|+.+.+||-...++++-.+ ..+++.|-...+.+..|.. .+.-.|+.++.+ +.+....+++|+.
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r----------~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~li--Ne~D~aLlLtas~-- 1131 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDR----------ERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELI--NEQDDALLLTASS-- 1131 (1387)
T ss_pred CCceeeecCCCceeEEcCCc----------ceEEEEecccCceeccccCCCCCCCccceeeee--cccchhheeeecc--
Confidence 47888999998887777533 3788888766677766643 345666777654 3345788888873
Q ss_pred CCCCCCCcceEEEEEEEe-C--CeEEEEEEEe----------ecCceeEeccccCeEEEEEC-CEEEEEEeeecCCCchh
Q 004094 478 LPEENEPTKGRILVFIVE-D--GKLQLIAEKE----------TKGAVYSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRE 543 (774)
Q Consensus 478 ~~~e~~~~~Grl~v~~i~-~--~kl~~~~~~~----------~~g~v~~i~~~~~~lv~~~g-~~l~v~~~~~~~~~~~~ 543 (774)
.|-|.+|+=- + ++.+++.... -.|.|+.=.+..|+|+++-+ ..|+||+.. ++.
T Consensus 1132 --------dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~-----~E~ 1198 (1387)
T KOG1517|consen 1132 --------DGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH-----KEQ 1198 (1387)
T ss_pred --------CceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc-----cce
Confidence 4888888533 2 4677776431 12466666666888877765 334565532 112
Q ss_pred hhhhcccccceEEEEEEE---eCCEEEEEeccccEEEEEEEc-cCCeEEEEeccCCcc-eeEEEEEeeC--CeEEEEccC
Q 004094 544 LQSECGHHGHILALYVQT---RGDFIVVGDLMKSISLLIYKH-EEGAIEERARDYNAN-WMSAVEILDD--DIYLGAENN 616 (774)
Q Consensus 544 l~~~~~~~~~~~~~~l~~---~~~~I~vgD~~~Sv~~~~~~~-~~~~l~~~a~D~~~~-~v~~~~~l~~--~~~l~~D~~ 616 (774)
+....-+.+...+++|+. .||.|++|=.-.|+-+|.-.. .++.++-+.|..... .+..+.+-.. +.++.+-.+
T Consensus 1199 ~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1199 VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC
Confidence 221111122334454543 579999999999988764332 234455555443322 1555555432 347777789
Q ss_pred CcEEEEeeCCCCCCccccceeeeEEEEEcCcccceEEe
Q 004094 617 FNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRH 654 (774)
Q Consensus 617 gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~ 654 (774)
|.+.+++..-... ..-+..+.+..-|+-.++|..
T Consensus 1279 G~I~~~DlR~~~~----e~~~~iv~~~~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1279 GDIQLLDLRMSSK----ETFLTIVAHWEYGSALTALTV 1312 (1387)
T ss_pred CeEEEEecccCcc----cccceeeeccccCccceeeee
Confidence 9999998864311 123455555556776666643
No 110
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=93.06 E-value=18 Score=40.40 Aligned_cols=102 Identities=18% Similarity=0.249 Sum_probs=73.6
Q ss_pred CCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCc
Q 004094 388 QKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSN 467 (774)
Q Consensus 388 ~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~ 467 (774)
++..+.+||++..+...+.+|+...++++|.+ ++|.++|.....+... ..+.+-....|.- ..
T Consensus 249 qrvsvtsipL~s~v~~ca~sp~E~kLvlGC~D----------gSiiLyD~~~~~t~~~----ka~~~P~~iaWHp---~g 311 (545)
T PF11768_consen 249 QRVSVTSIPLPSQVICCARSPSEDKLVLGCED----------GSIILYDTTRGVTLLA----KAEFIPTLIAWHP---DG 311 (545)
T ss_pred eEEEEEEEecCCcceEEecCcccceEEEEecC----------CeEEEEEcCCCeeeee----eecccceEEEEcC---CC
Confidence 35578999999999999999999999999977 4899999865543311 2223233455642 35
Q ss_pred eEEEEEeeeeCCCCCCCcceEEEEEEEeCC--eEEEEEEEeecCceeEecc
Q 004094 468 VYYCVGTAYVLPEENEPTKGRILVFIVEDG--KLQLIAEKETKGAVYSLNA 516 (774)
Q Consensus 468 ~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~--kl~~~~~~~~~g~v~~i~~ 516 (774)
.+++||. .+|.+.+|++.-+ +++++.+...+.++..+..
T Consensus 312 ai~~V~s----------~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~ 352 (545)
T PF11768_consen 312 AIFVVGS----------EQGELQCFDMALSPIKMQLLSEDATPKSTLQLSK 352 (545)
T ss_pred cEEEEEc----------CCceEEEEEeecCccceeeccccCCCccEEeeeh
Confidence 7899997 5799999999843 5667777666777666553
No 111
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=92.89 E-value=16 Score=42.62 Aligned_cols=219 Identities=14% Similarity=0.158 Sum_probs=114.9
Q ss_pred eEEEEEecCCCCcEEEEecCCceeEEEeeeCCCcceeeeeecCCCCCCceEEEEEecCceE-EEEecCCCCee----e--
Q 004094 52 QVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETR-ILAMNLEDELE----E-- 124 (774)
Q Consensus 52 ~l~~~sG~g~~g~L~~lr~gi~~~~~~~~~l~~~~~iw~~~~~~~~~~~~~li~S~~~~T~-vl~~~~~~~~~----e-- 124 (774)
+.++.|| .+|.++++.-....+.=-.++..|..-.|.-.. ..+++.+..+.|. ++.++.. +.+ -
T Consensus 26 efi~tcg--sdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~------s~~f~~~s~~~tv~~y~fps~-~~~~iL~Rft 96 (933)
T KOG1274|consen 26 EFICTCG--SDGDIRKWKTNSDEEEPETIDISGELVSSIACY------SNHFLTGSEQNTVLRYKFPSG-EEDTILARFT 96 (933)
T ss_pred CEEEEec--CCCceEEeecCCcccCCchhhccCceeEEEeec------ccceEEeeccceEEEeeCCCC-Cccceeeeee
Confidence 4445554 577788877766532212222233333443322 2345555555554 4445442 111 1
Q ss_pred --eeecCccccCcceeeeecCCCeEEEEecCcEEEEecCCCceeeeEeCCCCCcEEEEEEC--CCEEEEEEcCCeEEEEE
Q 004094 125 --TEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLE 200 (774)
Q Consensus 125 --~~~~~f~~~~~Tl~~~~~~~~~~vQVT~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~~~~~~ 200 (774)
+....|.-+..-+++|.- ...|.+++.++......... ...++.+.+.+ +.+++++..+|.+..++
T Consensus 97 lp~r~~~v~g~g~~iaagsd---------D~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 97 LPIRDLAVSGSGKMIAAGSD---------DTAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred ccceEEEEecCCcEEEeecC---------ceeEEEEeccccchheeecc-cCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 122334444445555432 34566666655333222222 33468888876 55777777788888888
Q ss_pred EcCceEEEE-Ee--ccCC---cee-EEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEe
Q 004094 201 IGDGILTEV-KH--AQLE---YEI-SCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLL 273 (774)
Q Consensus 201 ~~~~~l~~~-~~--~~l~---~~i-s~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~ 273 (774)
++++.+... .. ...+ ..+ +-++..| .+-.+++-.- ++.|.+|+..+.+..+.-... .....+..
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P------k~g~la~~~~-d~~Vkvy~r~~we~~f~Lr~~--~~ss~~~~ 237 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHP------KGGTLAVPPV-DNTVKVYSRKGWELQFKLRDK--LSSSKFSD 237 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecC------CCCeEEeecc-CCeEEEEccCCceeheeeccc--ccccceEE
Confidence 876443221 10 1111 222 2335543 1233444455 789999998887665432221 11111333
Q ss_pred eeec-CeeEEEEEeCCCcEEEEEEec
Q 004094 274 CAFE-GISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 274 ~~~~-~~~~L~vgl~~G~l~~y~~~~ 298 (774)
+.+. ...||-.|..||.+++|+++.
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEeccc
Confidence 3432 357899999999999999884
No 112
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.81 E-value=16 Score=39.27 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=38.8
Q ss_pred cceEEEEEecCCEEEEEECCCC-CeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEec
Q 004094 233 SQIAAVGMWTDISVRIFSLPDL-NLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 233 ~~~~~vg~~~~~~i~i~~l~~~-~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 298 (774)
...+.||-- |.++++|.+|+- ++++.-. ...+..++++ +..+++.|..||.+.-|.+-.
T Consensus 298 eR~vtVGgr-DrT~rlwKi~eesqlifrg~---~~sidcv~~I---n~~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 298 ERCVTVGGR-DRTVRLWKIPEESQLIFRGG---EGSIDCVAFI---NDEHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred cceEEeccc-cceeEEEeccccceeeeeCC---CCCeeeEEEe---cccceeeccCCceEEEeeecc
Confidence 556666666 888999998763 3333211 1234445444 468899999999999887653
No 113
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=21 Score=39.65 Aligned_cols=253 Identities=15% Similarity=0.169 Sum_probs=132.2
Q ss_pred CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCC
Q 004094 184 ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLG 263 (774)
Q Consensus 184 ~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~ 263 (774)
.+.+.|++ +..+....-..+.+.++.... ...|+++...+ ...+++||+- +|.+.||+..+...+......
T Consensus 188 ~n~laVal-g~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~------~G~~LavG~~-~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 188 ANVLAVAL-GQSVYLWSASSGSVTELCSFG-EELVTSVKWSP------DGSHLAVGTS-DGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred CCeEEEEe-cceEEEEecCCCceEEeEecC-CCceEEEEECC------CCCEEEEeec-CCeEEEEehhhccccccccCC
Confidence 55777776 333433333335555554444 78899998854 3689999999 999999998765443221110
Q ss_pred CccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCC--CeEEEe
Q 004094 264 GEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDR--PTVIYS 341 (774)
Q Consensus 264 ~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~--p~~l~~ 341 (774)
..++-.+ +... ...+..|.++|.++.+.+........ ....-.+-| +-++-.....-++.|.. -..++.
T Consensus 259 --h~~rvg~-laW~-~~~lssGsr~~~I~~~dvR~~~~~~~---~~~~H~qeV--CgLkws~d~~~lASGgnDN~~~Iwd 329 (484)
T KOG0305|consen 259 --HASRVGS-LAWN-SSVLSSGSRDGKILNHDVRISQHVVS---TLQGHRQEV--CGLKWSPDGNQLASGGNDNVVFIWD 329 (484)
T ss_pred --cCceeEE-Eecc-CceEEEecCCCcEEEEEEecchhhhh---hhhccccee--eeeEECCCCCeeccCCCccceEecc
Confidence 1222222 2222 45688999999999998764321111 000001111 11111111123333322 122221
Q ss_pred c---CCcEEEeeecccCc--eeeecccCCCCCCcEEEEe----CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCE
Q 004094 342 S---NKKLLYSNVNLKEV--SHMCPFNSAAFPDSLAIAK----EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRT 412 (774)
Q Consensus 342 ~---~~~~~~~~~~~~~i--~~~~~f~~~~~~~~l~~~~----~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~ 412 (774)
. .+.+.+.... ..+ .+.||+. .+++.+- +..++|.... ..-.++.+..+..+..+++++..+-
T Consensus 330 ~~~~~p~~~~~~H~-aAVKA~awcP~q-----~~lLAsGGGs~D~~i~fwn~~--~g~~i~~vdtgsQVcsL~Wsk~~kE 401 (484)
T KOG0305|consen 330 GLSPEPKFTFTEHT-AAVKALAWCPWQ-----SGLLATGGGSADRCIKFWNTN--TGARIDSVDTGSQVCSLIWSKKYKE 401 (484)
T ss_pred CCCccccEEEeccc-eeeeEeeeCCCc-----cCceEEcCCCcccEEEEEEcC--CCcEecccccCCceeeEEEcCCCCE
Confidence 1 2334443322 122 2334443 2444332 3456666655 4557888999999999999999887
Q ss_pred EEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEee
Q 004094 413 FAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTA 475 (774)
Q Consensus 413 ~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~ 475 (774)
++..-... ...|.+.+-.+++.+... .....+++.+.. .. ...++++|.+
T Consensus 402 i~sthG~s--------~n~i~lw~~ps~~~~~~l-~gH~~RVl~la~---SP-dg~~i~t~a~ 451 (484)
T KOG0305|consen 402 LLSTHGYS--------ENQITLWKYPSMKLVAEL-LGHTSRVLYLAL---SP-DGETIVTGAA 451 (484)
T ss_pred EEEecCCC--------CCcEEEEeccccceeeee-cCCcceeEEEEE---CC-CCCEEEEecc
Confidence 77654322 125677666555444322 123344555432 22 3567787775
No 114
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.40 E-value=22 Score=39.84 Aligned_cols=244 Identities=13% Similarity=0.083 Sum_probs=118.6
Q ss_pred cEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEE-EeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECC
Q 004094 176 SVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEV-KHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 252 (774)
Q Consensus 176 ~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~-~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~ 252 (774)
.|.+..+. +..++-+..++.+........+.... ........|+++++++. ..+ +++.+.|++|+||+++
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d------~~~-l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD------GSY-LLSGSDDKTLRIWDLK 233 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCC------CcE-EEEecCCceEEEeecc
Confidence 45555433 44433333455555544432220011 11234567888888652 234 4455559999999995
Q ss_pred CC-CeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEE
Q 004094 253 DL-NLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFA 331 (774)
Q Consensus 253 ~~-~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~ 331 (774)
+. ..+.+.. +-.....++++...+ ..++.|..||.+..|.+.. ++ ..+....-..++.-..|.. ....++
T Consensus 234 ~~~~~~~~l~-gH~~~v~~~~f~p~g--~~i~Sgs~D~tvriWd~~~--~~--~~~~l~~hs~~is~~~f~~--d~~~l~ 304 (456)
T KOG0266|consen 234 DDGRNLKTLK-GHSTYVTSVAFSPDG--NLLVSGSDDGTVRIWDVRT--GE--CVRKLKGHSDGISGLAFSP--DGNLLV 304 (456)
T ss_pred CCCeEEEEec-CCCCceEEEEecCCC--CEEEEecCCCcEEEEeccC--Ce--EEEeeeccCCceEEEEECC--CCCEEE
Confidence 43 3332211 111223455555433 6788899999999998764 32 2233344445665555542 234555
Q ss_pred ecCC--CeEEEecC-CcEE-Eeeec--ccC-ceeeecccCCCCCC--cEEEEe-CCeEEEEEEcCCCCeEEEEEeCCC--
Q 004094 332 ASDR--PTVIYSSN-KKLL-YSNVN--LKE-VSHMCPFNSAAFPD--SLAIAK-EGELTIGTIDDIQKLHIRSIPLGE-- 399 (774)
Q Consensus 332 ~~~~--p~~l~~~~-~~~~-~~~~~--~~~-i~~~~~f~~~~~~~--~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~-- 399 (774)
.++. -..++... +.+. ..-+. ... ....+.|+ |+ .++... ++.+++..+......-..+-....
T Consensus 305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs----p~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~ 380 (456)
T KOG0266|consen 305 SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS----PNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVR 380 (456)
T ss_pred EcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEEC----CCCcEEEEecCCCeEEEEEccCCcceeeecccCCcce
Confidence 4433 33333332 3321 11111 111 22333443 33 334333 558888888765322111111111
Q ss_pred cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC
Q 004094 400 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 449 (774)
Q Consensus 400 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~ 449 (774)
...+..+++....++..+.+ ..+++.|..+...+..++..
T Consensus 381 ~~~~~~~~~~~~~i~sg~~d----------~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 381 CIFSPTLSTGGKLIYSGSED----------GSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred eEecccccCCCCeEEEEeCC----------ceEEEEeCCccchhhhhcCC
Confidence 12223334444433333322 48999999887766655554
No 115
>PTZ00420 coronin; Provisional
Probab=92.28 E-value=25 Score=40.28 Aligned_cols=113 Identities=14% Similarity=0.010 Sum_probs=66.0
Q ss_pred CcEEEEEECC---CEEEEEEcCCeEEEEEEcCc-e-EE----EEEe-ccCCceeEEEEeCCCCCCCCCcceEEEEEecCC
Q 004094 175 YSVNVATANA---SQVLLATGGGHLVYLEIGDG-I-LT----EVKH-AQLEYEISCLDINPIGENPSYSQIAAVGMWTDI 244 (774)
Q Consensus 175 ~~I~~a~~~~---~~lvv~~~~~~~~~~~~~~~-~-l~----~~~~-~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~ 244 (774)
..|.+.+.++ ..++.+..++.+..+.+..+ . .. .+.. ......|.++++.+.. ...++.|.+ |+
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g-----~~iLaSgS~-Dg 148 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN-----YYIMCSSGF-DS 148 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC-----CeEEEEEeC-CC
Confidence 3566666553 35555555677777776542 1 11 1111 1245678999987521 234455667 99
Q ss_pred EEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEe
Q 004094 245 SVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLN 297 (774)
Q Consensus 245 ~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~ 297 (774)
.|.||++...+.+.....+ ....++.+.. +...|.++..||.+..|.+.
T Consensus 149 tIrIWDl~tg~~~~~i~~~--~~V~Slswsp--dG~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 149 FVNIWDIENEKRAFQINMP--KKLSSLKWNI--KGNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred eEEEEECCCCcEEEEEecC--CcEEEEEECC--CCCEEEEEecCCEEEEEECC
Confidence 9999999876654332221 2334444432 34567778889999888754
No 116
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=92.11 E-value=1.6 Score=44.12 Aligned_cols=273 Identities=17% Similarity=0.232 Sum_probs=146.6
Q ss_pred EEEEeCCC--cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCC-------CceEEEEEEEEE
Q 004094 392 IRSIPLGE--HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDT-------FEYGCSILSCSF 462 (774)
Q Consensus 392 ~~~i~l~~--tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~-------~E~~~si~~~~~ 462 (774)
.|+|..|. -|..-.|+|+.+.++-.+.+ +.|.+.+-.+++.-.-..... +..+.|+. |
T Consensus 205 ~r~IKFg~KSh~EcA~FSPDgqyLvsgSvD----------GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~---F 271 (508)
T KOG0275|consen 205 ARSIKFGQKSHVECARFSPDGQYLVSGSVD----------GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCIS---F 271 (508)
T ss_pred hhheecccccchhheeeCCCCceEeecccc----------ceeeeehhccchhhhhhhhhhhcceeecccceEEEe---e
Confidence 45555543 35567788887755544433 356666655554332222221 23344443 4
Q ss_pred cCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEecccc--CeEEE-EECCEEEEEEeeecCC
Q 004094 463 SDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFN--GKLLA-AINQKIQLYKWMLRDD 539 (774)
Q Consensus 463 ~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~--~~lv~-~~g~~l~v~~~~~~~~ 539 (774)
.+ ..++++-|. ..|.|.+|+|..+.+--.+...+...|+|+.--+ ..|+. +..+.++++.+. .
T Consensus 272 SR-DsEMlAsGs----------qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK---S 337 (508)
T KOG0275|consen 272 SR-DSEMLASGS----------QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK---S 337 (508)
T ss_pred cc-cHHHhhccC----------cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc---c
Confidence 43 356666554 4599999999866544444455667788887553 34554 456788898863 2
Q ss_pred CchhhhhhcccccceEEEEEEEeCCEEEEEeccccEEEEEEEccC--CeEEEEeccCCcceeEEEEEeeC--CeEEEEcc
Q 004094 540 GTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEE--GAIEERARDYNANWMSAVEILDD--DIYLGAEN 615 (774)
Q Consensus 540 ~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~--~~l~~~a~D~~~~~v~~~~~l~~--~~~l~~D~ 615 (774)
| +-|.....+..++.-......|++|+-+..-.+|.++.-+..+ .++...+.|+. |.++..+.. ..++++.+
T Consensus 338 G-K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~---vnsv~~~PKnpeh~iVCNr 413 (508)
T KOG0275|consen 338 G-KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYP---VNSVILLPKNPEHFIVCNR 413 (508)
T ss_pred c-hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCccc---ceeEEEcCCCCceEEEEcC
Confidence 2 2222222221112112234478899888888888775433321 23444454543 344555543 46899999
Q ss_pred CCcEEEEeeCCCCCCccccceeeeEEEEEcCcccceEEeeeeeecCCCCCCCCccEEEEEccccceEEEEecChhHHHHH
Q 004094 616 NFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFL 695 (774)
Q Consensus 616 ~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gsi~~i~~l~~~~~~~L 695 (774)
...++++....+...+. ..+.=.-|+.|++... ..+.=+.+.+.||-+|+|.-++-..
T Consensus 414 sntv~imn~qGQvVrsf------sSGkREgGdFi~~~lS------------pkGewiYcigED~vlYCF~~~sG~L---- 471 (508)
T KOG0275|consen 414 SNTVYIMNMQGQVVRSF------SSGKREGGDFINAILS------------PKGEWIYCIGEDGVLYCFSVLSGKL---- 471 (508)
T ss_pred CCeEEEEeccceEEeee------ccCCccCCceEEEEec------------CCCcEEEEEccCcEEEEEEeecCce----
Confidence 99999998864321110 0111123444544321 1234455567778888777775432
Q ss_pred HHHHHHHHhcccCCCCCCccccccc
Q 004094 696 EKLQTNLRKVIKGVGGLNHEQWRSF 720 (774)
Q Consensus 696 ~~lq~~l~~~~~~~~gl~~~~~R~~ 720 (774)
|+.|.-+.+-+-|+.|-.++..
T Consensus 472 ---E~tl~VhEkdvIGl~HHPHqNl 493 (508)
T KOG0275|consen 472 ---ERTLPVHEKDVIGLTHHPHQNL 493 (508)
T ss_pred ---eeeeecccccccccccCcccch
Confidence 2223333344556666555543
No 117
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=92.10 E-value=1.5 Score=46.09 Aligned_cols=117 Identities=21% Similarity=0.332 Sum_probs=76.2
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEE
Q 004094 376 EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGC 455 (774)
Q Consensus 376 ~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~ 455 (774)
+..+++..+-. .-..+.+|+++-...+-.+++...+.. |++. -.+.++|..+.++...|.-+..-...
T Consensus 321 DkkvRfwD~Rs--~~~~~sv~~gg~vtSl~ls~~g~~lLs-ssRD---------dtl~viDlRt~eI~~~~sA~g~k~as 388 (459)
T KOG0288|consen 321 DKKVRFWDIRS--ADKTRSVPLGGRVTSLDLSMDGLELLS-SSRD---------DTLKVIDLRTKEIRQTFSAEGFKCAS 388 (459)
T ss_pred ccceEEEeccC--CceeeEeecCcceeeEeeccCCeEEee-ecCC---------CceeeeecccccEEEEeecccccccc
Confidence 34455554432 235778888887777777766554443 3332 26889999988888776544333222
Q ss_pred EEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecC-ceeEec
Q 004094 456 SILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKG-AVYSLN 515 (774)
Q Consensus 456 si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g-~v~~i~ 515 (774)
..--+.|.. +..|++.|. +.|++|+|++..+|++.+-+..... +++++.
T Consensus 389 DwtrvvfSp-d~~YvaAGS----------~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~ 438 (459)
T KOG0288|consen 389 DWTRVVFSP-DGSYVAAGS----------ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLS 438 (459)
T ss_pred ccceeEECC-CCceeeecc----------CCCcEEEEEccCceEEEEeccCCCCcceEEEE
Confidence 222233553 578999887 4599999999999999887766654 677665
No 118
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=91.99 E-value=32 Score=40.85 Aligned_cols=165 Identities=10% Similarity=0.075 Sum_probs=104.9
Q ss_pred CCeEEEEEEEeec--CceeEeccc------cCeEEEEEC-----------CEEEEEEeeecCCCchhhhhhcccccceEE
Q 004094 496 DGKLQLIAEKETK--GAVYSLNAF------NGKLLAAIN-----------QKIQLYKWMLRDDGTRELQSECGHHGHILA 556 (774)
Q Consensus 496 ~~kl~~~~~~~~~--g~v~~i~~~------~~~lv~~~g-----------~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~ 556 (774)
.+.++.++.+++. ..+.+++.. +-+++++.+ ..|.+|++.+ .+ +|...+++...-.+
T Consensus 757 ~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e--~~--~L~~v~e~~v~Gav 832 (1096)
T KOG1897|consen 757 QNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE--LN--SLELVAETVVKGAV 832 (1096)
T ss_pred CCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec--CC--ceeeeeeeeeccce
Confidence 5789988887764 456666633 235777754 3688888863 23 34444444444445
Q ss_pred EEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEee-CCeEEEEccCCcEEEEeeCCCCCCccccc
Q 004094 557 LYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD-DDIYLGAENNFNLFTVRKNSEGATDEERG 635 (774)
Q Consensus 557 ~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~-~~~~l~~D~~gnl~~l~~~~~~~~~~~~~ 635 (774)
.+|...+.++++ -+-.+|.+++|..+ +.|..-++-..+ +++..... .|.++++|.-+.+.++.|..+. .
T Consensus 833 ~aL~~fngkllA-~In~~vrLye~t~~-~eLr~e~~~~~~--~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e------g 902 (1096)
T KOG1897|consen 833 YALVEFNGKLLA-GINQSVRLYEWTTE-RELRIECNISNP--IIALDLQVKGDEIAVGDLMRSITLLQYKGDE------G 902 (1096)
T ss_pred eehhhhCCeEEE-ecCcEEEEEEcccc-ceehhhhcccCC--eEEEEEEecCcEEEEeeccceEEEEEEeccC------C
Confidence 667777777655 48889999888654 345444444333 33443333 3678899999999999997632 3
Q ss_pred eeeeEEEEEcCcccceEEeeeeeecCCCCCCCCccEEEEEccccceEEEEe
Q 004094 636 RLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIAS 686 (774)
Q Consensus 636 ~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gsi~~i~~ 686 (774)
.+..+|....|.-+++..- ......+.+..+|-++.+..
T Consensus 903 ~f~evArD~~p~Wmtavei------------l~~d~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 903 NFEEVARDYNPNWMTAVEI------------LDDDTYLGAENSGNLFTVRK 941 (1096)
T ss_pred ceEEeehhhCccceeeEEE------------ecCceEEeecccccEEEEEe
Confidence 4666776666665544322 23456788888999986554
No 119
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=91.64 E-value=23 Score=38.45 Aligned_cols=132 Identities=15% Similarity=0.190 Sum_probs=74.8
Q ss_pred cEEEEecCCCceeeeEeCCCCCcEEEE-EECCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCC
Q 004094 154 SVRLVSSTSRELRNEWKSPPGYSVNVA-TANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSY 232 (774)
Q Consensus 154 ~i~l~~~~~~~~~~~~~~~~~~~I~~a-~~~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~ 232 (774)
.+..++.++++.+ |....+..+..+ ++++..+++...++.+..|...+|++ +.+..+..++.+-.+ + .
T Consensus 76 ~v~a~d~~tG~~~--W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~--~W~~~~~~~~~~~p~--v-----~ 144 (377)
T TIGR03300 76 TVVALDAETGKRL--WRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKE--LWRAKLSSEVLSPPL--V-----A 144 (377)
T ss_pred eEEEEEccCCcEe--eeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcE--eeeeccCceeecCCE--E-----E
Confidence 4667776665554 543333334322 35677888877778888887665654 233444444432111 0 1
Q ss_pred cceEEEEEecCCEEEEEECCCCCeeEEecCCCccC----ceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCcc
Q 004094 233 SQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEII----PRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGEL 303 (774)
Q Consensus 233 ~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~----p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l 303 (774)
...+++++. ++.+..++..+.+.+++........ ..+..+. ...++++..+|.+..+. ..+|++
T Consensus 145 ~~~v~v~~~-~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~----~~~v~~~~~~g~v~ald--~~tG~~ 212 (377)
T TIGR03300 145 NGLVVVRTN-DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA----DGGVLVGFAGGKLVALD--LQTGQP 212 (377)
T ss_pred CCEEEEECC-CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE----CCEEEEECCCCEEEEEE--ccCCCE
Confidence 345667766 8899999988877777654432110 0111111 13678899999876654 444543
No 120
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=91.64 E-value=5.6 Score=44.89 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=66.7
Q ss_pred EEeCCeEEEEEEcCCCCe--EEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCC
Q 004094 373 IAKEGELTIGTIDDIQKL--HIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDT 450 (774)
Q Consensus 373 ~~~~~~l~i~~l~~~~~~--~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~ 450 (774)
.+.+.+++|..+...+.. .-..-.=.+++-|+..+|....++..|+++ .|.++|..+.+.+.+ -+..
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdk----------tl~~~Df~sgEcvA~-m~GH 682 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDK----------TLCFVDFVSGECVAQ-MTGH 682 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCC----------ceEEEEeccchhhhh-hcCc
Confidence 345788999998875421 111112236788899888877666677665 799999988887765 3567
Q ss_pred CceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe
Q 004094 451 FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE 495 (774)
Q Consensus 451 ~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~ 495 (774)
.|.++.++ |..+=++.|-|. ..|.|++|++-
T Consensus 683 sE~VTG~k---F~nDCkHlISvs-----------gDgCIFvW~lp 713 (1080)
T KOG1408|consen 683 SEAVTGVK---FLNDCKHLISVS-----------GDGCIFVWKLP 713 (1080)
T ss_pred chheeeee---ecccchhheeec-----------CCceEEEEECc
Confidence 78888876 454445555543 23899999886
No 121
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.63 E-value=13 Score=41.14 Aligned_cols=171 Identities=16% Similarity=0.156 Sum_probs=82.2
Q ss_pred CCeEEEEEEeCCcceEEEecCCCeEEEecCC-cEEEeeecccCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCCCCeE
Q 004094 314 QPITLRTFSSKNTTHVFAASDRPTVIYSSNK-KLLYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLH 391 (774)
Q Consensus 314 ~pv~l~~~~~~~~~~v~~~~~~p~~l~~~~~-~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~ 391 (774)
.|..|.. ...+..|.++|+..+.+|+..+ +-.. . +....++ |.. .+.++..+ ++.+.|. .+...-.
T Consensus 34 ~p~~ls~--npngr~v~V~g~geY~iyt~~~~r~k~---~-G~g~~~v-w~~---~n~yAv~~~~~~I~I~--kn~~~~~ 101 (443)
T PF04053_consen 34 YPQSLSH--NPNGRFVLVCGDGEYEIYTALAWRNKA---F-GSGLSFV-WSS---RNRYAVLESSSTIKIY--KNFKNEV 101 (443)
T ss_dssp --SEEEE---TTSSEEEEEETTEEEEEETTTTEEEE---E-EE-SEEE-E-T---SSEEEEE-TTS-EEEE--ETTEE-T
T ss_pred CCeeEEE--CCCCCEEEEEcCCEEEEEEccCCcccc---c-CceeEEE-Eec---CccEEEEECCCeEEEE--EcCcccc
Confidence 3444432 2245688899999999998532 1111 1 1111111 211 23455554 5667664 2222334
Q ss_pred EEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEE
Q 004094 392 IRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC 471 (774)
Q Consensus 392 ~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~ 471 (774)
.++++++.++.+|.+ ..++++.+.. .|.|+|-.+.+.+.+++..+ +..+ .| . +..++++
T Consensus 102 ~k~i~~~~~~~~If~---G~LL~~~~~~-----------~i~~yDw~~~~~i~~i~v~~---vk~V-~W--s-~~g~~va 160 (443)
T PF04053_consen 102 VKSIKLPFSVEKIFG---GNLLGVKSSD-----------FICFYDWETGKLIRRIDVSA---VKYV-IW--S-DDGELVA 160 (443)
T ss_dssp T-----SS-EEEEE----SSSEEEEETT-----------EEEEE-TTT--EEEEESS-E----EEE-EE----TTSSEEE
T ss_pred ceEEcCCcccceEEc---CcEEEEECCC-----------CEEEEEhhHcceeeEEecCC---CcEE-EE--E-CCCCEEE
Confidence 578888888889987 4555554422 69999999999999988763 2222 34 2 3456777
Q ss_pred EEeeeeCCCCCCCcceEEEEEEEeCC------------eEEEEEEEeecCceeEeccccCeEEEEECCEEE
Q 004094 472 VGTAYVLPEENEPTKGRILVFIVEDG------------KLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQ 530 (774)
Q Consensus 472 VGT~~~~~~e~~~~~Grl~v~~i~~~------------kl~~~~~~~~~g~v~~i~~~~~~lv~~~g~~l~ 530 (774)
+.|. -.+++++.... .++.+++ +...|.+.+=.++-++....+.|.
T Consensus 161 l~t~-----------~~i~il~~~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d~fiYtT~~~lk 218 (443)
T PF04053_consen 161 LVTK-----------DSIYILKYNLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVEDCFIYTTSNHLK 218 (443)
T ss_dssp EE-S------------SEEEEEE-HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETTEEEEE-TTEEE
T ss_pred EEeC-----------CeEEEEEecchhcccccccCchhceEEEEE--ecceeEEEEEEcCEEEEEcCCeEE
Confidence 7663 25677766543 5666664 355555555445555555555543
No 122
>PTZ00421 coronin; Provisional
Probab=90.96 E-value=32 Score=38.87 Aligned_cols=115 Identities=14% Similarity=0.053 Sum_probs=71.0
Q ss_pred CcEEEEEECC---CEEEEEEcCCeEEEEEEcCceEE-----EEEe-ccCCceeEEEEeCCCCCCCCCcceEEEEEecCCE
Q 004094 175 YSVNVATANA---SQVLLATGGGHLVYLEIGDGILT-----EVKH-AQLEYEISCLDINPIGENPSYSQIAAVGMWTDIS 245 (774)
Q Consensus 175 ~~I~~a~~~~---~~lvv~~~~~~~~~~~~~~~~l~-----~~~~-~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~ 245 (774)
..|...+.++ ..++.+..++.+..+++..+.+. .+.. ......|.++++.+.. .++++.|.+ |+.
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-----~~iLaSgs~-Dgt 149 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-----MNVLASAGA-DMV 149 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-----CCEEEEEeC-CCE
Confidence 3577777653 45666666788888787543211 1111 2345678999996521 357788888 999
Q ss_pred EEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEec
Q 004094 246 VRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 246 i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 298 (774)
|.||++...+.+....-- .....++.+.. +...|..|..||.+..|.+..
T Consensus 150 VrIWDl~tg~~~~~l~~h-~~~V~sla~sp--dG~lLatgs~Dg~IrIwD~rs 199 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCH-SDQITSLEWNL--DGSLLCTTSKDKKLNIIDPRD 199 (493)
T ss_pred EEEEECCCCeEEEEEcCC-CCceEEEEEEC--CCCEEEEecCCCEEEEEECCC
Confidence 999999875544321110 11233444332 345788899999999887653
No 123
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.90 E-value=15 Score=35.96 Aligned_cols=145 Identities=12% Similarity=0.133 Sum_probs=84.0
Q ss_pred eCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCC--------------CCceeeeEEEEEEC---
Q 004094 375 KEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSC--------------AEESEMHFVRLLDD--- 437 (774)
Q Consensus 375 ~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~--------------~~~~~~~~l~l~d~--- 437 (774)
.+..+....+.....-..-+++.=+.+.+++|.+..+.++.+..+.... .++..+-++++.-.
T Consensus 36 ~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~ 115 (215)
T PF14761_consen 36 SGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHRVT 115 (215)
T ss_pred CCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcccccc
Confidence 4555555555533333344455556667777777776655555553211 11122233444431
Q ss_pred ----C-CceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC-----eEEEEEE---
Q 004094 438 ----Q-TFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG-----KLQLIAE--- 504 (774)
Q Consensus 438 ----~-~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~-----kl~~~~~--- 504 (774)
. ....+.-+|++..|.+.|+..|.++. =++||+. .++.+|+.+.. ++..+.-
T Consensus 116 ~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG----~LlVg~~-----------~~l~lf~l~~~~~~~~~~~~lDFe~~ 180 (215)
T PF14761_consen 116 PSFNESSKDQLEIIELPLSEPPLCIACCPVTG----NLLVGCG-----------NKLVLFTLKYQTIQSEKFSFLDFERS 180 (215)
T ss_pred cCCCCccccceEEEEecCCCCCCEEEecCCCC----CEEEEcC-----------CEEEEEEEEEEEEecccccEEechhh
Confidence 0 11134557888899999999987763 2777864 47777777622 2232221
Q ss_pred ---EeecCceeEeccccCeEEEEECCEEEEEEe
Q 004094 505 ---KETKGAVYSLNAFNGKLLAAINQKIQLYKW 534 (774)
Q Consensus 505 ---~~~~g~v~~i~~~~~~lv~~~g~~l~v~~~ 534 (774)
......+..++-..+|+.+.....+.++++
T Consensus 181 l~~~~~~~~p~~v~ic~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 181 LIDHIDNFKPTQVAICEGYIAVMSDLEVLVLKL 213 (215)
T ss_pred hhheecCceEEEEEEEeeEEEEecCCEEEEEEE
Confidence 223456777777788988888888888775
No 124
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=90.55 E-value=22 Score=37.93 Aligned_cols=134 Identities=19% Similarity=0.220 Sum_probs=71.7
Q ss_pred cEEE-EeCCeEEEEEEcCCCCe-----EEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEE
Q 004094 370 SLAI-AKEGELTIGTIDDIQKL-----HIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFI 443 (774)
Q Consensus 370 ~l~~-~~~~~l~i~~l~~~~~~-----~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i 443 (774)
.++- +.++..++..++....+ |.. -+-+++|||..+.++-+|.+. .-++.|..+.+.+
T Consensus 233 ~lat~s~Dgtvklw~~~~e~~l~~l~gH~~------RVs~VafHPsG~~L~TasfD~----------tWRlWD~~tk~El 296 (459)
T KOG0272|consen 233 NLATASADGTVKLWKLSQETPLQDLEGHLA------RVSRVAFHPSGKFLGTASFDS----------TWRLWDLETKSEL 296 (459)
T ss_pred ceeeeccCCceeeeccCCCcchhhhhcchh------hheeeeecCCCceeeeccccc----------chhhcccccchhh
Confidence 4443 34788888888875321 222 345899999999999998874 4455555444332
Q ss_pred EEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEE
Q 004094 444 STYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLL 522 (774)
Q Consensus 444 ~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv 522 (774)
-..+= ..+.+.++ .|..+ ...++-|.- .+-|| ||++..++..+... .+..+|++|.-- +||.+
T Consensus 297 L~QEG-Hs~~v~~i---af~~D-GSL~~tGGl--------D~~~R--vWDlRtgr~im~L~-gH~k~I~~V~fsPNGy~l 360 (459)
T KOG0272|consen 297 LLQEG-HSKGVFSI---AFQPD-GSLAATGGL--------DSLGR--VWDLRTGRCIMFLA-GHIKEILSVAFSPNGYHL 360 (459)
T ss_pred Hhhcc-ccccccee---EecCC-CceeeccCc--------cchhh--eeecccCcEEEEec-ccccceeeEeECCCceEE
Confidence 11111 11222332 23222 222322221 13355 45665555444333 267788888754 67766
Q ss_pred EEEC--CEEEEEEee
Q 004094 523 AAIN--QKIQLYKWM 535 (774)
Q Consensus 523 ~~~g--~~l~v~~~~ 535 (774)
+..+ +++.||++.
T Consensus 361 ATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 361 ATGSSDNTCKVWDLR 375 (459)
T ss_pred eecCCCCcEEEeeec
Confidence 5444 566776653
No 125
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=90.25 E-value=14 Score=38.32 Aligned_cols=175 Identities=22% Similarity=0.305 Sum_probs=94.1
Q ss_pred EEEecCcEEEEecCCCceeeeEeCCCCC--cEEEEEE-CCCEEEEEEcCCeEEEEEEcC-ceEEEEEeccC-CceeEEEE
Q 004094 148 VQVTSGSVRLVSSTSRELRNEWKSPPGY--SVNVATA-NASQVLLATGGGHLVYLEIGD-GILTEVKHAQL-EYEISCLD 222 (774)
Q Consensus 148 vQVT~~~i~l~~~~~~~~~~~~~~~~~~--~I~~a~~-~~~~lvv~~~~~~~~~~~~~~-~~l~~~~~~~l-~~~is~l~ 222 (774)
+=....+||+++..+++.+.+++.+.+. .+..+++ .+..+..+.++|.+..+.+.. ++...+....- ...-+|++
T Consensus 45 v~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld 124 (376)
T KOG1188|consen 45 VSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLD 124 (376)
T ss_pred EEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEee
Confidence 3355789999999887788887654332 2344444 466777777789998887753 22222211111 24456887
Q ss_pred eCCCCCCCCCcceEEEEEec---CCEEEEEECCCCCe-eE--EecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEE
Q 004094 223 INPIGENPSYSQIAAVGMWT---DISVRIFSLPDLNL-IT--KEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLL 296 (774)
Q Consensus 223 ~~~~~~~~~~~~~~~vg~~~---~~~i~i~~l~~~~~-~~--~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~ 296 (774)
... +...++.|+-. +-.+.+|.+..-+. +. .+.=..+ ...+.+++- +.+.|+-|+-||.+-.|.+
T Consensus 125 ~nc------k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DD--VT~lrFHP~-~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 125 LNC------KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDD--VTQLRFHPS-DPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred ccC------cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCc--ceeEEecCC-CCCeEEeecccceEEeeec
Confidence 742 24566666643 34677787754222 11 1100001 112333321 3467888999999999987
Q ss_pred ecCC--CccccceeeecCCCCeEEEEEEeCCcceEEEecC
Q 004094 297 NMKT--GELTDRKKVSLGTQPITLRTFSSKNTTHVFAASD 334 (774)
Q Consensus 297 ~~~~--~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~ 334 (774)
...+ ..|.. ....|+ .+....+..+++..|+|.+.
T Consensus 196 ~~d~EeDaL~~--viN~~s-SI~~igw~~~~ykrI~clTH 232 (376)
T KOG1188|consen 196 KKDNEEDALLH--VINHGS-SIHLIGWLSKKYKRIMCLTH 232 (376)
T ss_pred CCCcchhhHHH--hhcccc-eeeeeeeecCCcceEEEEEc
Confidence 5432 12211 111222 23333343445566777664
No 126
>KOG4328 consensus WD40 protein [Function unknown]
Probab=89.94 E-value=31 Score=37.15 Aligned_cols=278 Identities=14% Similarity=0.145 Sum_probs=131.7
Q ss_pred CcEEEEEEC---C-CEEEEEEcCCeEEEEEEcC-----ceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCE
Q 004094 175 YSVNVATAN---A-SQVLLATGGGHLVYLEIGD-----GILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDIS 245 (774)
Q Consensus 175 ~~I~~a~~~---~-~~lvv~~~~~~~~~~~~~~-----~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~ 245 (774)
.+|++.+.. + ..|++....|.+-+..++. .++.. -.+...+|+||.|.|.+ ...+....+ ||+
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~--f~~hs~~Vs~l~F~P~n-----~s~i~ssSy-DGt 258 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL--FTPHSGPVSGLKFSPAN-----TSQIYSSSY-DGT 258 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEE--eccCCccccceEecCCC-----hhheeeecc-Cce
Confidence 356555543 2 2444445567777777631 11111 12456789999998754 344555666 999
Q ss_pred EEEEECCC--CCeeEEecCCCccCceeEEeeee-cCeeEEEEEeCCCcEEEEEEecCCCccccc--eeeecCCCCeEEEE
Q 004094 246 VRIFSLPD--LNLITKEHLGGEIIPRSVLLCAF-EGISYLLCALGDGHLLNFLLNMKTGELTDR--KKVSLGTQPITLRT 320 (774)
Q Consensus 246 i~i~~l~~--~~~~~~~~l~~~~~p~si~~~~~-~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~--~~~~lG~~pv~l~~ 320 (774)
|+.-++.. ++.+.. +.++.. .+.-..+ .+...++.|..=|.+-++.......+.... .+..++ .+.+.|
T Consensus 259 iR~~D~~~~i~e~v~s--~~~d~~--~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~--sv~~NP 332 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLS--LDTDNI--WFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT--SVALNP 332 (498)
T ss_pred eeeeeecchhhHHHhh--cCccce--eeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccc--eeecCC
Confidence 99988865 233221 111100 0011112 123445555555655555544322111110 011221 122222
Q ss_pred EEeCCcceEEEec--CCCeEEEecC---CcE--EEeeecccCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCCC--Ce
Q 004094 321 FSSKNTTHVFAAS--DRPTVIYSSN---KKL--LYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQ--KL 390 (774)
Q Consensus 321 ~~~~~~~~v~~~~--~~p~~l~~~~---~~~--~~~~~~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~--~~ 390 (774)
+ ..-+|+++ ++..-|+.-+ ++- ..+.+........+-|.-. ...++... ++.+++....-.. -.
T Consensus 333 ~----~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs--~gtl~TT~~D~~IRv~dss~~sa~~~ 406 (498)
T KOG4328|consen 333 V----CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS--GGTLLTTCQDNEIRVFDSSCISAKDE 406 (498)
T ss_pred C----CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC--CCceEeeccCCceEEeecccccccCC
Confidence 2 12334433 2222233211 111 1122222212222223211 11233332 6777777653111 11
Q ss_pred EEEEEeC----C--CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcC
Q 004094 391 HIRSIPL----G--EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSD 464 (774)
Q Consensus 391 ~~~~i~l----~--~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~ 464 (774)
+...|+= + -||-|-+++|..+.++|+-... .|.++|+...+.+..+-.+.--.|.|+..|.-.
T Consensus 407 p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r----------~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~- 475 (498)
T KOG4328|consen 407 PLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPR----------PIDVFDGNGGQMVCELHDPESSTIPSVNEFHPM- 475 (498)
T ss_pred ccceeeccCcccccccchhheeCCCccEEEEeccCc----------ceeEEcCCCCEEeeeccCccccccccceeeccc-
Confidence 2222221 1 1577788899888777775543 599999998887776555544456666666422
Q ss_pred CCceEEEEEeeeeCCCCCCCcceEEEEEEE
Q 004094 465 DSNVYYCVGTAYVLPEENEPTKGRILVFIV 494 (774)
Q Consensus 465 ~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i 494 (774)
+.-++-|.+ ..|.+|+|.-
T Consensus 476 --~~~~~aG~~---------s~Gki~vft~ 494 (498)
T KOG4328|consen 476 --RDTLAAGGN---------SSGKIYVFTN 494 (498)
T ss_pred --ccceeccCC---------ccceEEEEec
Confidence 222555542 5699999864
No 127
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=89.64 E-value=6.7 Score=33.91 Aligned_cols=66 Identities=24% Similarity=0.290 Sum_probs=50.2
Q ss_pred EEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEecccc-CeEEEE-ECCEEEE
Q 004094 454 GCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFN-GKLLAA-INQKIQL 531 (774)
Q Consensus 454 ~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~-~~lv~~-~g~~l~v 531 (774)
+.+|+.+-+..++.+-|+|||.- ..|.+|+ .=+++++....+.|++++.+. +++.+| .+.+|-+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D----------~~IRvf~----~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGv 67 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDD----------FEIRVFK----GDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGV 67 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCC----------cEEEEEe----CCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEE
Confidence 57888888888888999999943 4677774 236777788899999999984 555554 5678989
Q ss_pred EE
Q 004094 532 YK 533 (774)
Q Consensus 532 ~~ 533 (774)
|+
T Consensus 68 Y~ 69 (111)
T PF14783_consen 68 YD 69 (111)
T ss_pred Ee
Confidence 87
No 128
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=89.28 E-value=36 Score=36.88 Aligned_cols=275 Identities=18% Similarity=0.260 Sum_probs=136.3
Q ss_pred CCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCC-C-----CeeEEecC--CCccCc--eeEEeeeec-CeeEE
Q 004094 214 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD-L-----NLITKEHL--GGEIIP--RSVLLCAFE-GISYL 282 (774)
Q Consensus 214 l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~-~-----~~~~~~~l--~~~~~p--~si~~~~~~-~~~~L 282 (774)
..+||.|-+..|+. ...++.|.- +...++|++.. - +.+..+.. .....| +++--+..+ +...|
T Consensus 177 ~~~~V~~~~WnP~~-----~~llasg~~-~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 177 HESEVFICAWNPLR-----DGLLASGSG-DSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred CCCceEEEecCchh-----hhhhhccCC-ccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 56778777776642 235566655 67788888874 1 11111111 111122 233223332 56778
Q ss_pred EEEeCCCcEEEEEEecCCCccccceeeecC--CCCeEEEEEE-eCCcceEEEec-CCCeEEEecC-CcE-EEeeecccCc
Q 004094 283 LCALGDGHLLNFLLNMKTGELTDRKKVSLG--TQPITLRTFS-SKNTTHVFAAS-DRPTVIYSSN-KKL-LYSNVNLKEV 356 (774)
Q Consensus 283 ~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG--~~pv~l~~~~-~~~~~~v~~~~-~~p~~l~~~~-~~~-~~~~~~~~~i 356 (774)
..|.-||++..|..+ |.+.. .+| ..|+ ..++ .+.++.++..| |+..+++... +.. +..+....+
T Consensus 251 atG~~~G~~riw~~~---G~l~~----tl~~HkgPI--~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~- 320 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKD---GNLIS----TLGQHKGPI--FSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP- 320 (524)
T ss_pred EEeecCcEEEEEecC---chhhh----hhhccCCce--EEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC-
Confidence 899999999999866 33321 122 2343 2222 22234455544 4444444332 221 111211111
Q ss_pred eeeecccCC-CCCCcEEEE-eCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEE
Q 004094 357 SHMCPFNSA-AFPDSLAIA-KEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRL 434 (774)
Q Consensus 357 ~~~~~f~~~-~~~~~l~~~-~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l 434 (774)
..+.+ ...+.|+.. +++.+.+|+++...+. ...+-=...+..+-|.|...+++-++.+ ..+++
T Consensus 321 ----~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~-~t~~GH~g~V~alk~n~tg~LLaS~SdD----------~Tlki 385 (524)
T KOG0273|consen 321 ----ALDVDWQSNDEFATSSTDGCIHVCKVGEDRPV-KTFIGHHGEVNALKWNPTGSLLASCSDD----------GTLKI 385 (524)
T ss_pred ----ccceEEecCceEeecCCCceEEEEEecCCCcc-eeeecccCceEEEEECCCCceEEEecCC----------CeeEe
Confidence 01110 011345543 5788999999875431 1222223446678888876665555443 36777
Q ss_pred EECCCceEEEEEECCCCc-eEEEEEEEEEcC----C-CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE-ee
Q 004094 435 LDDQTFEFISTYPLDTFE-YGCSILSCSFSD----D-SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK-ET 507 (774)
Q Consensus 435 ~d~~~~~~i~~~~~~~~E-~~~si~~~~~~~----~-~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~-~~ 507 (774)
.+-..-.. ...|..++ .++++. |.-.. . .....+...+ ..+.+.+|+++.+.. +|.. ++
T Consensus 386 Ws~~~~~~--~~~l~~Hskei~t~~-wsp~g~v~~n~~~~~~l~sas---------~dstV~lwdv~~gv~--i~~f~kH 451 (524)
T KOG0273|consen 386 WSMGQSNS--VHDLQAHSKEIYTIK-WSPTGPVTSNPNMNLMLASAS---------FDSTVKLWDVESGVP--IHTLMKH 451 (524)
T ss_pred eecCCCcc--hhhhhhhccceeeEe-ecCCCCccCCCcCCceEEEee---------cCCeEEEEEccCCce--eEeeccC
Confidence 76432221 22333222 334443 32111 0 1122222222 347899999876543 3333 67
Q ss_pred cCceeEeccc-cCeEEEE--ECCEEEEEE
Q 004094 508 KGAVYSLNAF-NGKLLAA--INQKIQLYK 533 (774)
Q Consensus 508 ~g~v~~i~~~-~~~lv~~--~g~~l~v~~ 533 (774)
..|||+++-. +|++++. .++.|.++.
T Consensus 452 ~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 452 QEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred CCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 8999999976 4554432 345677755
No 129
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=89.09 E-value=8.9 Score=41.50 Aligned_cols=146 Identities=11% Similarity=0.081 Sum_probs=78.7
Q ss_pred CcceeeeecCCCeEEEEecCcEEEEecCCCceeeeEeCCCCCcEEEEEEC---CCEEEEEEcCCeEEEEEEcCceEEEEE
Q 004094 134 TQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATAN---ASQVLLATGGGHLVYLEIGDGILTEVK 210 (774)
Q Consensus 134 ~~Tl~~~~~~~~~~vQVT~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~---~~~lvv~~~~~~~~~~~~~~~~l~~~~ 210 (774)
...|+++..+...+|.=+... +....+..+.|..+...... -..+.++.++|.+.++.+....-..-.
T Consensus 133 DeyiAsvs~gGdiiih~~~t~---------~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~ 203 (673)
T KOG4378|consen 133 DEYIASVSDGGDIIIHGTKTK---------QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA 203 (673)
T ss_pred cceeEEeccCCcEEEEecccC---------ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch
Confidence 345666666555554444333 33445555667766555433 225555555677777665431100011
Q ss_pred eccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCc
Q 004094 211 HAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGH 290 (774)
Q Consensus 211 ~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~ 290 (774)
......+.+-++++|.+ ..++|..-.|..|.+|......... .|..+.+-.++++.+ ...+|.+|...|.
T Consensus 204 ~~~HsAP~~gicfspsn------e~l~vsVG~Dkki~~yD~~s~~s~~--~l~y~~Plstvaf~~--~G~~L~aG~s~G~ 273 (673)
T KOG4378|consen 204 SEAHSAPCRGICFSPSN------EALLVSVGYDKKINIYDIRSQASTD--RLTYSHPLSTVAFSE--CGTYLCAGNSKGE 273 (673)
T ss_pred hhhccCCcCcceecCCc------cceEEEecccceEEEeecccccccc--eeeecCCcceeeecC--CceEEEeecCCce
Confidence 12334445556676643 3344444348899999986432211 121112223444432 4688999999999
Q ss_pred EEEEEEec
Q 004094 291 LLNFLLNM 298 (774)
Q Consensus 291 l~~y~~~~ 298 (774)
|+.|.+..
T Consensus 274 ~i~YD~R~ 281 (673)
T KOG4378|consen 274 LIAYDMRS 281 (673)
T ss_pred EEEEeccc
Confidence 99998764
No 130
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=89.03 E-value=22 Score=39.14 Aligned_cols=89 Identities=22% Similarity=0.403 Sum_probs=58.4
Q ss_pred cCceeEeccc-cCeEEEEEC--CEEEEEEeeecCCCchhhhhh-cccccceEEEEEEEeCCEEEEEeccccEEEEEEEcc
Q 004094 508 KGAVYSLNAF-NGKLLAAIN--QKIQLYKWMLRDDGTRELQSE-CGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHE 583 (774)
Q Consensus 508 ~g~v~~i~~~-~~~lv~~~g--~~l~v~~~~~~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~ 583 (774)
+|++...+.. +|+.+++++ ..++||.|+ +.+|+.. -+|-+-...++-+-.|.||++|---+=|+++.|-
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd-----t~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~-- 362 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFD-----TQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE-- 362 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeecc-----HHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec--
Confidence 4555555544 566666665 578899885 3566654 3454445555555678899999999999987664
Q ss_pred CCeEEEEeccC-CcceeEEEEEe
Q 004094 584 EGAIEERARDY-NANWMSAVEIL 605 (774)
Q Consensus 584 ~~~l~~~a~D~-~~~~v~~~~~l 605 (774)
+.+ ++||-. +.-||+.+.|=
T Consensus 363 erR--VVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 363 ERR--VVARGQGHKSWVSVVAFD 383 (636)
T ss_pred cce--EEEeccccccceeeEeec
Confidence 344 466643 45699888764
No 131
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.42 E-value=28 Score=34.63 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=52.6
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEe-CCeEEEEEEEeecCceeEeccc---cCeEEEEEC-CEEEEEEee
Q 004094 467 NVYYCVGTAYVLPEENEPTKGRILVFIVE-DGKLQLIAEKETKGAVYSLNAF---NGKLLAAIN-QKIQLYKWM 535 (774)
Q Consensus 467 ~~~i~VGT~~~~~~e~~~~~Grl~v~~i~-~~kl~~~~~~~~~g~v~~i~~~---~~~lv~~~g-~~l~v~~~~ 535 (774)
.++++|.|+-.+ ...-.|||+++++. ...+.+....+....++.++=- .+.+++|+| ..+++|+..
T Consensus 21 ~nrLavAt~q~y---Gl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 21 ENRLAVATAQHY---GLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred cchhheeehhhc---ccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 467889998776 35678999999996 5679999999999999988743 345777777 789998854
No 132
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.40 E-value=65 Score=38.77 Aligned_cols=241 Identities=16% Similarity=0.151 Sum_probs=123.7
Q ss_pred cceEEEEEecCCEEEEEECCCCCeeEEecCCC--ccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeee
Q 004094 233 SQIAAVGMWTDISVRIFSLPDLNLITKEHLGG--EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVS 310 (774)
Q Consensus 233 ~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~--~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~ 310 (774)
+..++++.. .-.|.||+..+.+......... +.-..++.+++-.+...|++++.||.+-+|+-....
T Consensus 1076 ~p~i~~ad~-r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~---------- 1144 (1387)
T KOG1517|consen 1076 EPQIAAADD-RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK---------- 1144 (1387)
T ss_pred CceeEEcCC-cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc----------
Confidence 444554433 4478888887766544333321 122345655543456678999999999888743310
Q ss_pred cCCCCeEEEE-EEeCCcceEEEecCCCeEEEecCCcEEEeeecccCceeeecccCCCCCCcEEEEeCCeEEEEEE-cCCC
Q 004094 311 LGTQPITLRT-FSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTI-DDIQ 388 (774)
Q Consensus 311 lG~~pv~l~~-~~~~~~~~v~~~~~~p~~l~~~~~~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l-~~~~ 388 (774)
-.+.+|.. .. ++ ++ .+...++ ...+... ....+.++++++ .++-++ |...
T Consensus 1145 --~~~~eLVTaw~-----~L---s~---~~~~~r~-----------~~~v~dW---qQ~~G~Ll~tGd-~r~IRIWDa~~ 1196 (1387)
T KOG1517|consen 1145 --WKKPELVTAWS-----SL---SD---QLPGARG-----------TGLVVDW---QQQSGHLLVTGD-VRSIRIWDAHK 1196 (1387)
T ss_pred --cCCceeEEeec-----cc---cc---cCccCCC-----------CCeeeeh---hhhCCeEEecCC-eeEEEEEeccc
Confidence 01112221 10 00 00 0000000 0011111 111345566655 444444 3334
Q ss_pred CeEEEEEeCCCc--ccEE-EEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCc---eEEEEE-ECCCCceEEEEEEEE
Q 004094 389 KLHIRSIPLGEH--PRRI-CHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTF---EFISTY-PLDTFEYGCSILSCS 461 (774)
Q Consensus 389 ~~~~~~i~l~~t--p~~i-~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~---~~i~~~-~~~~~E~~~si~~~~ 461 (774)
....+.||.+.. ++.+ ++.++.+.+++.+.+ ++++++|...- ..+..+ ++...|.| ....
T Consensus 1197 E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaD----------GsvRvyD~R~a~~ds~v~~~R~h~~~~~I---v~~s 1263 (1387)
T KOG1517|consen 1197 EQVVADIPYGSSTLVTALSADLVHGNIIAAGFAD----------GSVRVYDRRMAPPDSLVCVYREHNDVEPI---VHLS 1263 (1387)
T ss_pred ceeEeecccCCCccceeecccccCCceEEEeecC----------CceEEeecccCCccccceeecccCCcccc---eeEE
Confidence 566777777632 3443 345567888888866 47899887421 112222 23333332 2233
Q ss_pred EcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC----eEEEEEEEeecCceeEeccccCe-EEE-EECCEEEEEEee
Q 004094 462 FSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG----KLQLIAEKETKGAVYSLNAFNGK-LLA-AINQKIQLYKWM 535 (774)
Q Consensus 462 ~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~----kl~~~~~~~~~g~v~~i~~~~~~-lv~-~~g~~l~v~~~~ 535 (774)
+..++-..++-|. ..|+|+++++.-. -+.++...+.-+..+++.....- |++ +.++.+.||+..
T Consensus 1264 lq~~G~~elvSgs----------~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1264 LQRQGLGELVSGS----------QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS 1333 (1387)
T ss_pred eecCCCcceeeec----------cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecC
Confidence 4443333344443 4599999999742 24455555556679999877554 444 444889998863
No 133
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.40 E-value=44 Score=35.64 Aligned_cols=279 Identities=14% Similarity=0.131 Sum_probs=132.9
Q ss_pred cceeeeeecCCCCCCceEEEEEecCceEE-EEecCCCCeeeeeecCccccCcceeeeecCCCeEEEEe--cCcEEEEecC
Q 004094 85 IKGMWSLRSSTDDPFDTFLVVSFISETRI-LAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVT--SGSVRLVSST 161 (774)
Q Consensus 85 ~~~iw~~~~~~~~~~~~~li~S~~~~T~v-l~~~~~~~~~e~~~~~f~~~~~Tl~~~~~~~~~~vQVT--~~~i~l~~~~ 161 (774)
...+|.+..+. +..||.-+..+.|.+ +.+..+..++.. ..-.....+-+|..-.++++.+-.+ ...+++-+.+
T Consensus 224 tdEVWfl~FS~---nGkyLAsaSkD~Taiiw~v~~d~~~kl~-~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~ 299 (519)
T KOG0293|consen 224 TDEVWFLQFSH---NGKYLASASKDSTAIIWIVVYDVHFKLK-KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVD 299 (519)
T ss_pred CCcEEEEEEcC---CCeeEeeccCCceEEEEEEecCcceeee-eeeecccCceEEEEECCCCCeEEecCchHheeeccCC
Confidence 35799998854 468899888888874 555554443322 1111111222222222333222222 2335555655
Q ss_pred CCceeeeEeCCCCCcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEE
Q 004094 162 SRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVG 239 (774)
Q Consensus 162 ~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg 239 (774)
++..........|.+..+|+-. +..++....++.++.+..+. .+...+.-.-...|.++++.+ + ..+++..
T Consensus 300 tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~--D----gk~vl~v 372 (519)
T KOG0293|consen 300 TGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITY--D----GKYVLLV 372 (519)
T ss_pred cchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcC--C----CcEEEEE
Confidence 5444443332223556666633 33555544456666666553 322222112224588888853 2 3444444
Q ss_pred EecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeE--
Q 004094 240 MWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPIT-- 317 (774)
Q Consensus 240 ~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~-- 317 (774)
+- |..+.+|+..+..... -+..+.+..|..+. ++..+.++.+.+-.+..|.+.+ ..+.. +..|-+.-.
T Consensus 373 ~~-d~~i~l~~~e~~~dr~--lise~~~its~~iS--~d~k~~LvnL~~qei~LWDl~e--~~lv~---kY~Ghkq~~fi 442 (519)
T KOG0293|consen 373 TV-DKKIRLYNREARVDRG--LISEEQPITSFSIS--KDGKLALVNLQDQEIHLWDLEE--NKLVR---KYFGHKQGHFI 442 (519)
T ss_pred ec-ccceeeechhhhhhhc--cccccCceeEEEEc--CCCcEEEEEcccCeeEEeecch--hhHHH---HhhcccccceE
Confidence 44 8899999987532211 01111122344333 2456678888888888877763 11111 123433212
Q ss_pred EEEEEeCCcc-eEEEecCCCeE--EEec-CCcE-EEeeecccCceeeecccCCCCCCcEEEE-eCCeEEEEEEcCC
Q 004094 318 LRTFSSKNTT-HVFAASDRPTV--IYSS-NKKL-LYSNVNLKEVSHMCPFNSAAFPDSLAIA-KEGELTIGTIDDI 387 (774)
Q Consensus 318 l~~~~~~~~~-~v~~~~~~p~~--l~~~-~~~~-~~~~~~~~~i~~~~~f~~~~~~~~l~~~-~~~~l~i~~l~~~ 387 (774)
++.| .+|.+ ..++.|+.-.- |+.. .+++ ...+-+.+.+.+++ . ++..|.-|.-+ +++.++|....+.
T Consensus 443 IrSC-Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVs-w-NP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 443 IRSC-FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVS-W-NPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EEec-cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEe-c-CCCCHHHhhccCCCCeEEEecCCcc
Confidence 2233 22344 44455543333 3222 3443 22222223444433 1 23334444444 4788898877643
No 134
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.33 E-value=34 Score=34.26 Aligned_cols=195 Identities=14% Similarity=0.056 Sum_probs=0.0
Q ss_pred CCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeee
Q 004094 397 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAY 476 (774)
Q Consensus 397 l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~ 476 (774)
+++.| ++..++++++++..++. ..+.-+|++++..+-.-++...-+...+.. ..++++|+
T Consensus 11 VDasp--LVV~~dskT~v~igSHs---------~~~~avd~~sG~~~We~ilg~RiE~sa~vv-------gdfVV~GC-- 70 (354)
T KOG4649|consen 11 VDASP--LVVCNDSKTLVVIGSHS---------GIVIAVDPQSGNLIWEAILGVRIECSAIVV-------GDFVVLGC-- 70 (354)
T ss_pred ccCCc--EEEecCCceEEEEecCC---------ceEEEecCCCCcEEeehhhCceeeeeeEEE-------CCEEEEEE--
Q ss_pred eCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEECCEEEEEEeeecCCCchhhhhhcccccceEE
Q 004094 477 VLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILA 556 (774)
Q Consensus 477 ~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~ 556 (774)
.+|.+|++..+.+..--.+...-.=.+.+.+.+.+.++.+-...=..|.++.+ .+.=+-+..-.+.+++
T Consensus 71 --------y~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~---~~~cVykskcgG~~f~ 139 (354)
T KOG4649|consen 71 --------YSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPK---TYGCVYKSKCGGGTFV 139 (354)
T ss_pred --------ccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccc---ccceEEecccCCceec
Q ss_pred EEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccCCcEEEEe
Q 004094 557 LYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVR 623 (774)
Q Consensus 557 ~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~ 623 (774)
.-.-..++-=+......|. +++..+.+....++-.-..-..+.+--......++.+--+|++..|.
T Consensus 140 sP~i~~g~~sly~a~t~G~-vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~ 205 (354)
T KOG4649|consen 140 SPVIAPGDGSLYAAITAGA-VLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFD 205 (354)
T ss_pred cceecCCCceEEEEeccce-EEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEc
No 135
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=87.26 E-value=1.8 Score=31.12 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=31.6
Q ss_pred EEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECC
Q 004094 207 TEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 252 (774)
Q Consensus 207 ~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~ 252 (774)
..+..+.+..+|++++.+| ..+.+++|+. +|.|.+|.+.
T Consensus 3 ~~~~~k~l~~~v~~~~w~P------~mdLiA~~t~-~g~v~v~Rl~ 41 (47)
T PF12894_consen 3 RQLGEKNLPSRVSCMSWCP------TMDLIALGTE-DGEVLVYRLN 41 (47)
T ss_pred ceecccCCCCcEEEEEECC------CCCEEEEEEC-CCeEEEEECC
Confidence 3455667888899999987 3578999998 9999999983
No 136
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=87.00 E-value=43 Score=35.12 Aligned_cols=274 Identities=17% Similarity=0.144 Sum_probs=136.0
Q ss_pred CCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeee-cCeeEEEEEeCCCcEE
Q 004094 214 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAF-EGISYLLCALGDGHLL 292 (774)
Q Consensus 214 l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~-~~~~~L~vgl~~G~l~ 292 (774)
...++-|+++.| ..+.++-|-- |..-.+|.+.+.+.... ++. .-.|+.-+.| .+..+|--|--+|.|.
T Consensus 63 H~~svFavsl~P------~~~l~aTGGg-DD~AflW~~~~ge~~~e--ltg--HKDSVt~~~FshdgtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 63 HTDSVFAVSLHP------NNNLVATGGG-DDLAFLWDISTGEFAGE--LTG--HKDSVTCCSFSHDGTLLATGDMSGKVL 131 (399)
T ss_pred cCCceEEEEeCC------CCceEEecCC-CceEEEEEccCCcceeE--ecC--CCCceEEEEEccCceEEEecCCCccEE
Confidence 345677777765 2456665555 77888898876553221 111 1124433333 3567788888899999
Q ss_pred EEEEecCCCccccceeee-cCCCCeEEEEEEeCCcceEEEecC--CCeEEEecCC-c-EEEeeecccCceeeecccCCCC
Q 004094 293 NFLLNMKTGELTDRKKVS-LGTQPITLRTFSSKNTTHVFAASD--RPTVIYSSNK-K-LLYSNVNLKEVSHMCPFNSAAF 367 (774)
Q Consensus 293 ~y~~~~~~~~l~~~~~~~-lG~~pv~l~~~~~~~~~~v~~~~~--~p~~l~~~~~-~-~~~~~~~~~~i~~~~~f~~~~~ 367 (774)
+++.... .. +.+.. -+..-+.|. -.....+++.|. ...|.+.-.+ . .+..+-+..++.+ -.| .
T Consensus 132 v~~~stg--~~--~~~~~~e~~dieWl~---WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~-G~f----~ 199 (399)
T KOG0296|consen 132 VFKVSTG--GE--QWKLDQEVEDIEWLK---WHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTC-GEF----I 199 (399)
T ss_pred EEEcccC--ce--EEEeecccCceEEEE---ecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccc-ccc----c
Confidence 9987653 21 11110 011112221 112335666663 3344444322 2 2222211111111 112 2
Q ss_pred CCc---EEEEeCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEE
Q 004094 368 PDS---LAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIS 444 (774)
Q Consensus 368 ~~~---l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~ 444 (774)
|++ +...+++.+++..+.+.+.++.-+-.=+..-.-+....... .++.|.+ .+.+++++..+.+++.
T Consensus 200 pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~-~~~~g~~---------e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 200 PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGS-TLTKGNS---------EGVACGVNNGSGKVVN 269 (399)
T ss_pred CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccc-eeEeccC---------CccEEEEccccceEEE
Confidence 332 33456788888877766554433200011111122222222 2223322 2356666666666665
Q ss_pred EEE-----C--CCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc
Q 004094 445 TYP-----L--DTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF 517 (774)
Q Consensus 445 ~~~-----~--~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~ 517 (774)
... + ...+...|++...+.. .-+..++|. .-|+|.+|+....+++ +..+++.+|+.+.-.
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss-~lpL~A~G~----------vdG~i~iyD~a~~~~R--~~c~he~~V~~l~w~ 336 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSS-KLPLAACGS----------VDGTIAIYDLAASTLR--HICEHEDGVTKLKWL 336 (399)
T ss_pred ecCCCCccccccchhhhhhhhhccccc-ccchhhccc----------ccceEEEEecccchhh--eeccCCCceEEEEEc
Confidence 433 1 2233345554433221 235555554 4599999998654454 455667889999877
Q ss_pred c-CeEE-EEECCEEEEEE
Q 004094 518 N-GKLL-AAINQKIQLYK 533 (774)
Q Consensus 518 ~-~~lv-~~~g~~l~v~~ 533 (774)
+ .+|+ ++.+.+|+.|+
T Consensus 337 ~t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 337 NTDYLLTACANGKVRQWD 354 (399)
T ss_pred CcchheeeccCceEEeee
Confidence 7 5665 45567777654
No 137
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.65 E-value=73 Score=37.42 Aligned_cols=200 Identities=17% Similarity=0.237 Sum_probs=98.5
Q ss_pred cEEEEEECCCEEEEEEcCCeEEEEEEcCceEEEEEec-cCCc-eeEEEEeCCCCCCCCCcceEEEEEecC--C-EEEEEE
Q 004094 176 SVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHA-QLEY-EISCLDINPIGENPSYSQIAAVGMWTD--I-SVRIFS 250 (774)
Q Consensus 176 ~I~~a~~~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~-~l~~-~is~l~~~~~~~~~~~~~~~~vg~~~~--~-~i~i~~ 250 (774)
.|.+++.+...+++....|.++.+. ..+..+..+ ..+. .+..+.+.. +.+-.+.+|-... . .+.||+
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln---~s~~~~~~fqa~~~siv~~L~~~~-----~~~~L~sv~Ed~~~np~llkiw~ 98 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILN---SSFQLIRGFQAYEQSIVQFLYILN-----KQNFLFSVGEDEQGNPVLLKIWD 98 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEec---ccceeeehheecchhhhhHhhccc-----CceEEEEEeecCCCCceEEEEec
Confidence 5666666677788877777777654 223221111 1111 133332211 1133445555422 1 689999
Q ss_pred CCCC---C-e--eEEe-----cCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEE
Q 004094 251 LPDL---N-L--ITKE-----HLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLR 319 (774)
Q Consensus 251 l~~~---~-~--~~~~-----~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~ 319 (774)
++.. + + +... ..|.+..|-+.+.+. ++-..+.||..||.++.|+=|.....-...+-..-|..|+.=-
T Consensus 99 lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs-~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL 177 (933)
T KOG2114|consen 99 LEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVS-EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGL 177 (933)
T ss_pred ccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEE-ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceee
Confidence 8532 2 2 2111 233333444443322 1345688999999999998543211101112234577776544
Q ss_pred EEEeCCcceEEEecCCCeEEEecCCc---EEEeeecccCceeeecccCCCCCCcEEEEeCCeEEEEEEcCC
Q 004094 320 TFSSKNTTHVFAASDRPTVIYSSNKK---LLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDI 387 (774)
Q Consensus 320 ~~~~~~~~~v~~~~~~p~~l~~~~~~---~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~ 387 (774)
.+..++...+|+....-..+|.-.++ .....-+.-++.+ ..|+.. ...|+++.++.+.+...+..
T Consensus 178 ~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnC-ss~~~~--t~qfIca~~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 178 ALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNC-SSFSDG--TYQFICAGSEFLYFYDSDGR 245 (933)
T ss_pred EEecCCceeEEEEecceeEEEEecCCCcceeeeccCCcccee-eecCCC--CccEEEecCceEEEEcCCCc
Confidence 44555555578776665555543332 2211111112222 112111 12488888999999887753
No 138
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=86.62 E-value=38 Score=34.07 Aligned_cols=267 Identities=17% Similarity=0.157 Sum_probs=146.7
Q ss_pred ccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCC
Q 004094 401 PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 480 (774)
Q Consensus 401 p~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~ 480 (774)
.+.|.|..+..++.-+.-+. ..-+.-..+++.+.+|+=-.+-..+|-..| ...+++-|.+-
T Consensus 13 lTqiKyN~eGDLlFscaKD~----------~~~vw~s~nGerlGty~GHtGavW~~Did~-----~s~~liTGSAD---- 73 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDS----------TPTVWYSLNGERLGTYDGHTGAVWCCDIDW-----DSKHLITGSAD---- 73 (327)
T ss_pred cceEEecCCCcEEEEecCCC----------CceEEEecCCceeeeecCCCceEEEEEecC-----Ccceeeecccc----
Confidence 45677887777555443332 122222235677777765554443332222 35677777754
Q ss_pred CCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCe-EEEEE----CCE--EEEEEeeecCCCchhhhhh-cccc
Q 004094 481 ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGK-LLAAI----NQK--IQLYKWMLRDDGTRELQSE-CGHH 551 (774)
Q Consensus 481 e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~-lv~~~----g~~--l~v~~~~~~~~~~~~l~~~-~~~~ 551 (774)
-.+.+|++..+|. ++..+++.||..+.-. +|. ++++. |+. |.+|+.. ++.. .+... ..+.
T Consensus 74 ------~t~kLWDv~tGk~--la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~--~~~~-~~~s~ep~~k 142 (327)
T KOG0643|consen 74 ------QTAKLWDVETGKQ--LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIR--DDSS-DIDSEEPYLK 142 (327)
T ss_pred ------ceeEEEEcCCCcE--EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEcc--CChh-hhcccCceEE
Confidence 2577899887654 4556778888887754 444 45543 433 4555543 2211 11111 1111
Q ss_pred cc---eEEEE--EEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCe-EEEEccCCcEEEEeeC
Q 004094 552 GH---ILALY--VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI-YLGAENNFNLFTVRKN 625 (774)
Q Consensus 552 ~~---~~~~~--l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~-~l~~D~~gnl~~l~~~ 625 (774)
.. .-+++ ....+.+|+.|+--.++.. |+...+....-+.+-+...++.+++-.+.+ |+.+-++.+-.++...
T Consensus 143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~--~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGETIIAGHEDGSISI--YDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR 220 (327)
T ss_pred ecCCccceeeeeecccCCEEEEecCCCcEEE--EEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecc
Confidence 11 11222 2346889999999999874 676665444444444556777777765554 5667777777777663
Q ss_pred CCCCCccccceeeeEEEEEcCcccceEEeeeeeecCCCCCCCCccEEEEEccccceEEEEec--ChhHHHHHH-HHHHHH
Q 004094 626 SEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASL--PHEQYLFLE-KLQTNL 702 (774)
Q Consensus 626 ~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gsi~~i~~l--~~~~~~~L~-~lq~~l 702 (774)
.|+..-.|..-..||+....+ .....|+.|+.+-.=..-+.- .+-+.|++. .+|..+
T Consensus 221 ----------tl~v~Kty~te~PvN~aaisP----------~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEi 280 (327)
T KOG0643|consen 221 ----------TLEVLKTYTTERPVNTAAISP----------LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEI 280 (327)
T ss_pred ----------ceeeEEEeeecccccceeccc----------ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHh
Confidence 466667777777777643321 122344443332221111111 122234443 467788
Q ss_pred HhcccCCCCCCcccccc
Q 004094 703 RKVIKGVGGLNHEQWRS 719 (774)
Q Consensus 703 ~~~~~~~~gl~~~~~R~ 719 (774)
.+.-.|+|-+|-.+|..
T Consensus 281 grvkGHFGPINsvAfhP 297 (327)
T KOG0643|consen 281 GRVKGHFGPINSVAFHP 297 (327)
T ss_pred ccccccccCcceeEECC
Confidence 88888888888777653
No 139
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=86.52 E-value=18 Score=41.47 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=66.4
Q ss_pred eeeeecCCCeEEEEecCcEEEEecCCCceeeeEeCCCC----------CcEEEEEEC--CCEEEEEEcCCeEEEEEEcCc
Q 004094 137 LFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPG----------YSVNVATAN--ASQVLLATGGGHLVYLEIGDG 204 (774)
Q Consensus 137 l~~~~~~~~~~vQVT~~~i~l~~~~~~~~~~~~~~~~~----------~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~ 204 (774)
|++|.+.+-.-|+++|++-.+.++..-+.+..|+.-.| .+|++.+.+ +-.++-+...+.+.++.+..+
T Consensus 530 ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 55555554455666666665555433234445544322 245555554 446666666788888888775
Q ss_pred eEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCC
Q 004094 205 ILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD 253 (774)
Q Consensus 205 ~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~ 253 (774)
++...- +.....|.++.|+. .+.++++|.- |+++.+|++..
T Consensus 610 ~~v~~l-~~Ht~ti~SlsFS~------dg~vLasgg~-DnsV~lWD~~~ 650 (707)
T KOG0263|consen 610 SLVKQL-KGHTGTIYSLSFSR------DGNVLASGGA-DNSVRLWDLTK 650 (707)
T ss_pred cchhhh-hcccCceeEEEEec------CCCEEEecCC-CCeEEEEEchh
Confidence 543321 12266788888853 2677888777 99999998754
No 140
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=85.94 E-value=95 Score=38.05 Aligned_cols=94 Identities=19% Similarity=0.205 Sum_probs=68.7
Q ss_pred EEEEEEEe-CCeEEEEEEEeecCceeEeccccCeEEEE-ECCEEEEEEeeecCCCchhh--hhhcccccceEEEEEEEeC
Q 004094 488 RILVFIVE-DGKLQLIAEKETKGAVYSLNAFNGKLLAA-INQKIQLYKWMLRDDGTREL--QSECGHHGHILALYVQTRG 563 (774)
Q Consensus 488 rl~v~~i~-~~kl~~~~~~~~~g~v~~i~~~~~~lv~~-~g~~l~v~~~~~~~~~~~~l--~~~~~~~~~~~~~~l~~~~ 563 (774)
.|+++.++ +..|.-++-.+.+--|+++..++++|++| +-+.+.+..|+++ .++| ..+.+-....+++..-+.|
T Consensus 1117 KI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqee---p~rlsL~srd~~~l~v~s~EFLVdg 1193 (1366)
T KOG1896|consen 1117 KIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEE---PYRLSLLSRDFEPLNVYSTEFLVDG 1193 (1366)
T ss_pred EEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccC---ceEEEEeecCCchhhceeeeeEEcC
Confidence 78899984 55677777777788888888899998776 5688888888642 1233 2232223344666677777
Q ss_pred C--EEEEEeccccEEEEEEEccC
Q 004094 564 D--FIVVGDLMKSISLLIYKHEE 584 (774)
Q Consensus 564 ~--~I~vgD~~~Sv~~~~~~~~~ 584 (774)
+ +.+|.|+.+-+.++.|.++.
T Consensus 1194 ~~L~flvsDa~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1194 SNLSFLVSDADRNIHVYMYAPEN 1216 (1366)
T ss_pred CeeEEEEEcCCCcEEEEEeCCCC
Confidence 6 78899999999999999864
No 141
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=85.88 E-value=6.5 Score=39.62 Aligned_cols=77 Identities=12% Similarity=0.222 Sum_probs=53.2
Q ss_pred CceeEEEEeCC-CCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEee-eec-CeeEEEEEeCCCcE
Q 004094 215 EYEISCLDINP-IGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLC-AFE-GISYLLCALGDGHL 291 (774)
Q Consensus 215 ~~~is~l~~~~-~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~-~~~-~~~~L~vgl~~G~l 291 (774)
...|+||+.-. ...+......+++|+. +|.|.|++-..++++.+..++ .+|-.+... .+. ....++|.+|||.+
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE-~~~i~iLd~~af~il~~~~lp--svPv~i~~~G~~devdyRI~Va~Rdg~i 252 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTE-SGEIYILDPQAFTILKQVQLP--SVPVFISVSGQYDEVDYRIVVACRDGKI 252 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEec-CCeEEEECchhheeEEEEecC--CCceEEEEEeeeeccceEEEEEeCCCEE
Confidence 46688885421 1112224668899999 999999998888888777776 366665433 332 45679999999988
Q ss_pred EEE
Q 004094 292 LNF 294 (774)
Q Consensus 292 ~~y 294 (774)
+..
T Consensus 253 y~i 255 (257)
T PF14779_consen 253 YTI 255 (257)
T ss_pred EEE
Confidence 754
No 142
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.79 E-value=11 Score=39.62 Aligned_cols=131 Identities=10% Similarity=0.145 Sum_probs=72.1
Q ss_pred cCceeEeccccCeEEEEEC-CEEEEEEeeecCCCchhhhhhcccccceEEEEEEEe-CCEEEEEecc--ccEEEEEEEcc
Q 004094 508 KGAVYSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTR-GDFIVVGDLM--KSISLLIYKHE 583 (774)
Q Consensus 508 ~g~v~~i~~~~~~lv~~~g-~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~I~vgD~~--~Sv~~~~~~~~ 583 (774)
.++|-.+...+|.|+.|++ +.+.++.....|....+|...+... ..+.+.-... .+++..|-.. +-+-+ |+-+
T Consensus 105 ~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~-g~~~~r~~~~~p~Iva~GGke~~n~lki--wdle 181 (412)
T KOG3881|consen 105 TKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGP-GLYDVRQTDTDPYIVATGGKENINELKI--WDLE 181 (412)
T ss_pred cccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCC-ceeeeccCCCCCceEecCchhcccceee--eecc
Confidence 6777788888899888876 4666765433332233343332211 1122211111 2233335444 22222 3433
Q ss_pred CCeEEEEecc--------CCcceeEEEEEeeC--C-eEEEEccCCcEEEEeeCCCCCCccccceeeeEEEEEcCcccc
Q 004094 584 EGAIEERARD--------YNANWMSAVEILDD--D-IYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVN 650 (774)
Q Consensus 584 ~~~l~~~a~D--------~~~~~v~~~~~l~~--~-~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~ 650 (774)
..+-+.-|+. ..|.|.+++.|+.. . .|+.+-+.+.+.+|...+. -.++++|-..+.+.
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q---------RRPV~~fd~~E~~i 250 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ---------RRPVAQFDFLENPI 250 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc---------CcceeEeccccCcc
Confidence 3333444433 34789999999976 2 4778889999999887532 12566776666553
No 143
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=85.74 E-value=70 Score=36.33 Aligned_cols=40 Identities=10% Similarity=0.207 Sum_probs=27.3
Q ss_pred cEEEEeCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEec
Q 004094 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK 419 (774)
Q Consensus 370 ~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~ 419 (774)
.+-+.+.++++++++.....|-- + ++.+|.++.+++.|.+
T Consensus 245 ~L~~fTR~GvrLGTvg~~D~WIW-t---------V~~~PNsQ~v~~GCqD 284 (1081)
T KOG1538|consen 245 QLSLFTRDGVRLGTVGEQDSWIW-T---------VQAKPNSQYVVVGCQD 284 (1081)
T ss_pred ceEEEeecCeEEeeccccceeEE-E---------EEEccCCceEEEEEcc
Confidence 45556667777777776555422 1 4558899999999976
No 144
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=85.71 E-value=65 Score=35.92 Aligned_cols=206 Identities=12% Similarity=0.062 Sum_probs=106.4
Q ss_pred CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEE---EcCC---------
Q 004094 398 GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCS---FSDD--------- 465 (774)
Q Consensus 398 ~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~---~~~~--------- 465 (774)
.+.+..+.|.++.+.++|.+... .+++.|..+.+.+..+......++-|+. |. +..+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g----------~v~iwD~~~~k~~~~~~~~h~~rvg~la-W~~~~lssGsr~~~I~~~ 285 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDG----------TVQIWDVKEQKKTRTLRGSHASRVGSLA-WNSSVLSSGSRDGKILNH 285 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCC----------eEEEEehhhccccccccCCcCceeEEEe-ccCceEEEecCCCcEEEE
Confidence 67788999999999999998763 6777776555544444332333443332 21 0000
Q ss_pred -------------CceEEEEEeeeeCCCCCCC---cceEEEEEEEeCCeEEEEEEEeecCceeEec--cccCeEE-EEEC
Q 004094 466 -------------SNVYYCVGTAYVLPEENEP---TKGRILVFIVEDGKLQLIAEKETKGAVYSLN--AFNGKLL-AAIN 526 (774)
Q Consensus 466 -------------~~~~i~VGT~~~~~~e~~~---~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~--~~~~~lv-~~~g 526 (774)
.+.--+=|-.....+...+ ...++.+|+... .--+++-.++.++|.|++ +++..|+ .|-|
T Consensus 286 dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~-~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG 364 (484)
T KOG0305|consen 286 DVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS-PEPKFTFTEHTAAVKALAWCPWQSGLLATGGG 364 (484)
T ss_pred EEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC-ccccEEEeccceeeeEeeeCCCccCceEEcCC
Confidence 0000111111111111111 124677776621 222344467789998875 5565555 4555
Q ss_pred CE---EEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCE--EE--EEeccccEEEEEEEccCCeEEEEeccCCccee
Q 004094 527 QK---IQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDF--IV--VGDLMKSISLLIYKHEEGAIEERARDYNANWM 599 (774)
Q Consensus 527 ~~---l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~--I~--vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v 599 (774)
.. |++|... .| ..+... ++...+.+|.+.+++ |+ .|....-|.+++|-.- ..+..+.. +...|
T Consensus 365 s~D~~i~fwn~~---~g-~~i~~v---dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l~g--H~~RV 434 (484)
T KOG0305|consen 365 SADRCIKFWNTN---TG-ARIDSV---DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAELLG--HTSRV 434 (484)
T ss_pred CcccEEEEEEcC---CC-cEeccc---ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeeecC--Cccee
Confidence 43 4443321 22 222222 233456677775543 44 4888888999888542 12222211 11223
Q ss_pred EEEEEeeC--CeEEEEccCCcEEEEeeCC
Q 004094 600 SAVEILDD--DIYLGAENNFNLFTVRKNS 626 (774)
Q Consensus 600 ~~~~~l~~--~~~l~~D~~gnl~~l~~~~ 626 (774)
... .++. ..++.+..|.+|.++..-+
T Consensus 435 l~l-a~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 435 LYL-ALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EEE-EECCCCCEEEEecccCcEEeccccC
Confidence 332 2333 3577888999999988754
No 145
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=85.66 E-value=47 Score=34.24 Aligned_cols=255 Identities=13% Similarity=0.134 Sum_probs=128.1
Q ss_pred CCcEEEEE--ECCCEEEEEEcCCeEEEEEEcCceEEE---E-EeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEE
Q 004094 174 GYSVNVAT--ANASQVLLATGGGHLVYLEIGDGILTE---V-KHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVR 247 (774)
Q Consensus 174 ~~~I~~a~--~~~~~lvv~~~~~~~~~~~~~~~~l~~---~-~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~ 247 (774)
+..|+..+ .++..++-+..++.+..+.+++-...+ + ...+.+ .++.+.|++- -.-++|.+-+.++++
T Consensus 86 ~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V~FapD------c~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-HPTRVVFAPD------CKSVVVSVKRGNKLC 158 (420)
T ss_pred CCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC-CceEEEECCC------cceEEEEEccCCEEE
Confidence 34676665 345577767778888888876511111 1 123445 4778888652 233566666678999
Q ss_pred EEECCCCCe-------eEEecCCCccCc--eeEEeeeec---CeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCC
Q 004094 248 IFSLPDLNL-------ITKEHLGGEIIP--RSVLLCAFE---GISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQP 315 (774)
Q Consensus 248 i~~l~~~~~-------~~~~~l~~~~~p--~si~~~~~~---~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~p 315 (774)
+|.+...+- +....+ ..| +++.+...+ +..++.-...|-.++.|.+.... |......++...-
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~---~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~--L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNL---EFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQL--LQSIDTNQSSNYD 233 (420)
T ss_pred EEEeeecccCCCCccccccccc---ccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCce--eeeeccccccccc
Confidence 998753111 111111 011 233333222 23344445555556666544110 1111111222221
Q ss_pred eEEEEEEeCCcceEEEecCCCeE-----EEecCCcEE----Eeeecc-cCceeeecccCCCCCCcEEE-EeCCeEEEEEE
Q 004094 316 ITLRTFSSKNTTHVFAASDRPTV-----IYSSNKKLL----YSNVNL-KEVSHMCPFNSAAFPDSLAI-AKEGELTIGTI 384 (774)
Q Consensus 316 v~l~~~~~~~~~~v~~~~~~p~~-----l~~~~~~~~----~~~~~~-~~i~~~~~f~~~~~~~~l~~-~~~~~l~i~~l 384 (774)
..+.| .+..+.++|=.|=+ +|..+|.++ ...+.. +.......|++. ....+- ..++..++...
T Consensus 234 aavSP----~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~--S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 234 AAVSP----DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS--STRAVTVSKDGKWRIWDT 307 (420)
T ss_pred eeeCC----CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC--cceeEEEecCCcEEEeec
Confidence 22222 23345555544422 344444431 122221 222223345432 123443 34788888877
Q ss_pred cCCC------C-eEEEEEeC---CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceE
Q 004094 385 DDIQ------K-LHIRSIPL---GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYG 454 (774)
Q Consensus 385 ~~~~------~-~~~~~i~l---~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~ 454 (774)
+-.- + +..-.+|+ |..|.|+..+|+.+.+++... +.|+++...+.+..+.++--..+.|
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-----------s~l~~~~se~g~~~~~~e~~h~~~I 376 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-----------SDLKVFASEDGKDYPELEDIHSTTI 376 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-----------CceEEEEcccCccchhHHHhhcCce
Confidence 6531 1 12223555 568999999999999988763 4799998877776665554444555
Q ss_pred EEE
Q 004094 455 CSI 457 (774)
Q Consensus 455 ~si 457 (774)
.|+
T Consensus 377 s~i 379 (420)
T KOG2096|consen 377 SSI 379 (420)
T ss_pred eeE
Confidence 544
No 146
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=85.58 E-value=28 Score=36.56 Aligned_cols=136 Identities=10% Similarity=0.117 Sum_probs=82.3
Q ss_pred CeEEEEEEcCCCCeEEEEEeCCC---cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCce
Q 004094 377 GELTIGTIDDIQKLHIRSIPLGE---HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEY 453 (774)
Q Consensus 377 ~~l~i~~l~~~~~~~~~~i~l~~---tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~ 453 (774)
+.+.+.+..+ ..|.+-..|+-. .+.-+.++|..+..+..|+-. .+|++.|-.+..--...-.+.+..
T Consensus 234 ~~I~lw~~~~-g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D---------gsIrIWDiRs~~~~~~~~~kAh~s 303 (440)
T KOG0302|consen 234 KGIHLWEPST-GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD---------GSIRIWDIRSGPKKAAVSTKAHNS 303 (440)
T ss_pred cceEeeeecc-CceeecCccccccccchhhhccCCccCceEEeeecC---------ceEEEEEecCCCccceeEeeccCC
Confidence 3455556555 677777777743 455677777666555555432 489998876652222222244443
Q ss_pred EEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeE-EEEEEEe-ecCceeEeccc--cCeEEEEEC--C
Q 004094 454 GCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKL-QLIAEKE-TKGAVYSLNAF--NGKLLAAIN--Q 527 (774)
Q Consensus 454 ~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl-~~~~~~~-~~g~v~~i~~~--~~~lv~~~g--~ 527 (774)
=.-+.+| . .+.++|+-|. -.|.+.++++..-+. +.++..+ +++|||+|.=- ....+++.| +
T Consensus 304 DVNVISW--n-r~~~lLasG~----------DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~ 370 (440)
T KOG0302|consen 304 DVNVISW--N-RREPLLASGG----------DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN 370 (440)
T ss_pred ceeeEEc--c-CCcceeeecC----------CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC
Confidence 3334445 2 2345777665 249999999985443 3455444 59999999743 456666555 6
Q ss_pred EEEEEEee
Q 004094 528 KIQLYKWM 535 (774)
Q Consensus 528 ~l~v~~~~ 535 (774)
+|.+|++.
T Consensus 371 QitiWDls 378 (440)
T KOG0302|consen 371 QITIWDLS 378 (440)
T ss_pred cEEEEEee
Confidence 88888875
No 147
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=85.58 E-value=20 Score=36.29 Aligned_cols=159 Identities=13% Similarity=0.090 Sum_probs=99.1
Q ss_pred EEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC--eEEEEEEEeecCceeEecccc------CeEEEEE
Q 004094 454 GCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG--KLQLIAEKETKGAVYSLNAFN------GKLLAAI 525 (774)
Q Consensus 454 ~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~--kl~~~~~~~~~g~v~~i~~~~------~~lv~~~ 525 (774)
+.++ .|....+.+..++||+-... ..-+|.++..+.. .+.....++++-|++.+--+. -.|++..
T Consensus 47 lya~-~Ws~~~~~~~rla~gS~~Ee------~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs 119 (364)
T KOG0290|consen 47 LYAM-NWSVRPDKKFRLAVGSFIEE------YNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS 119 (364)
T ss_pred eeee-ccccCCCcceeEEEeeeccc------cCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc
Confidence 3444 35445567889999986522 4467777777643 444445568899999887552 2489999
Q ss_pred CCEEEEEEeeecCCCchhhhhh------cccccceEEEEEEE---eCCEEEEEeccccEEEEEEEcc-C--CeEEEEecc
Q 004094 526 NQKIQLYKWMLRDDGTRELQSE------CGHHGHILALYVQT---RGDFIVVGDLMKSISLLIYKHE-E--GAIEERARD 593 (774)
Q Consensus 526 g~~l~v~~~~~~~~~~~~l~~~------~~~~~~~~~~~l~~---~~~~I~vgD~~~Sv~~~~~~~~-~--~~l~~~a~D 593 (774)
|..+++|+..+. +...++... ..+.. ..++..+ .-++|.+.-+-.-++++..... . -+-.++|.|
T Consensus 120 ~D~LRlWri~~e-e~~~~~~~~L~~~kns~~~a--PlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD 196 (364)
T KOG0290|consen 120 SDFLRLWRIGDE-ESRVELQSVLNNNKNSEFCA--PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD 196 (364)
T ss_pred cCeEEEEeccCc-CCceehhhhhccCcccccCC--cccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecC
Confidence 999999987532 222222111 11111 2244443 3468888888887777544332 1 145667776
Q ss_pred CCcceeEEEEEeeC--CeEEEEccCCcEEEEeeC
Q 004094 594 YNANWMSAVEILDD--DIYLGAENNFNLFTVRKN 625 (774)
Q Consensus 594 ~~~~~v~~~~~l~~--~~~l~~D~~gnl~~l~~~ 625 (774)
..|..+.|+.. +.|...-.+|.+.+|...
T Consensus 197 ---KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 197 ---KEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ---cceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 45677788863 457666789999999864
No 148
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=85.40 E-value=74 Score=36.33 Aligned_cols=156 Identities=10% Similarity=-0.012 Sum_probs=82.2
Q ss_pred eEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe--E----EEE-EEEeecCceeEecc--ccCeEEE
Q 004094 453 YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK--L----QLI-AEKETKGAVYSLNA--FNGKLLA 523 (774)
Q Consensus 453 ~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~k--l----~~~-~~~~~~g~v~~i~~--~~~~lv~ 523 (774)
...+...+.|.......++|||- .|.|+.-.-.+.+ . +.+ +..-..|||+++.. |...++.
T Consensus 346 ~~~~~t~~~F~~~~p~~FiVGTe----------~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fl 415 (555)
T KOG1587|consen 346 KAVGATSLKFEPTDPNHFIVGTE----------EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFL 415 (555)
T ss_pred cccceeeEeeccCCCceEEEEcC----------CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceee
Confidence 34455556666666778999993 3777663332211 2 222 22345899999975 3444444
Q ss_pred EE-CCEEEEEEeeecCCCchhhhhhcccccce-EEEEEEEe---CCEEEEEeccccEEEEEEEccCCeEEEEeccCCcce
Q 004094 524 AI-NQKIQLYKWMLRDDGTRELQSECGHHGHI-LALYVQTR---GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANW 598 (774)
Q Consensus 524 ~~-g~~l~v~~~~~~~~~~~~l~~~~~~~~~~-~~~~l~~~---~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~ 598 (774)
++ +-.+++|. ..- .-.+...++... +.+++.+. --.++++|.+.-+.+..+. .+....+++......
T Consensus 416 s~gDW~vriWs--~~~----~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl--~~~~~Pv~s~~~~~~ 487 (555)
T KOG1587|consen 416 SVGDWTVRIWS--EDV----IASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL--QDDEEPVLSQKVCSP 487 (555)
T ss_pred eeccceeEecc--ccC----CCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh--ccccCCccccccccc
Confidence 44 45777755 210 111112222221 23444443 2256667777776664333 233333443332233
Q ss_pred eEEEEEeeC-Ce-EEEEccCCcEEEEeeCC
Q 004094 599 MSAVEILDD-DI-YLGAENNFNLFTVRKNS 626 (774)
Q Consensus 599 v~~~~~l~~-~~-~l~~D~~gnl~~l~~~~ 626 (774)
+....+... .. +.++|..|++++++.++
T Consensus 488 ~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 488 ALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 333444444 33 56899999999999964
No 149
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=85.36 E-value=47 Score=34.35 Aligned_cols=222 Identities=20% Similarity=0.188 Sum_probs=114.8
Q ss_pred EeCCeEEEEEEcCCC-------C-----eEEEEEeCCCcccE-EEE------ecCCCEEEEEEeccCCCCCceeeeEEEE
Q 004094 374 AKEGELTIGTIDDIQ-------K-----LHIRSIPLGEHPRR-ICH------QEQSRTFAICSLKNQSCAEESEMHFVRL 434 (774)
Q Consensus 374 ~~~~~l~i~~l~~~~-------~-----~~~~~i~l~~tp~~-i~y------~~~~~~~~v~~~~~~~~~~~~~~~~l~l 434 (774)
...+.|.+..++... . -..-+.+-|+|+-- .-| .|+++.+++..-++ -|++
T Consensus 68 sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~----------PIh~ 137 (406)
T KOG2919|consen 68 SEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ----------PIHL 137 (406)
T ss_pred cccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC----------ceee
Confidence 457888888887642 1 12334455555432 223 45666555544333 5899
Q ss_pred EECCCceEEEEEEC-CCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeC-C-eEEEE---E--EEe
Q 004094 435 LDDQTFEFISTYPL-DTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVED-G-KLQLI---A--EKE 506 (774)
Q Consensus 435 ~d~~~~~~i~~~~~-~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~-~-kl~~~---~--~~~ 506 (774)
+|.-+.+.-.+|.. +.-++++...++.|..++...+ .|- +-.|.+|++.+ + +.... . +.-
T Consensus 138 wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf-aGy-----------krcirvFdt~RpGr~c~vy~t~~~~k~g 205 (406)
T KOG2919|consen 138 WDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF-AGY-----------KRCIRVFDTSRPGRDCPVYTTVTKGKFG 205 (406)
T ss_pred eeccccccccchhhhhhHHhhhhheeEEecCCCCeEe-ecc-----------cceEEEeeccCCCCCCcchhhhhccccc
Confidence 99988888777643 4446667777777887655444 353 24788898852 2 22211 1 233
Q ss_pred ecCceeEecc--ccCe-EE-EEECCEEEEEEeeecCCCchhhhhhcccccceEEEEEEE--eCCEEEEEeccccEEEEEE
Q 004094 507 TKGAVYSLNA--FNGK-LL-AAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQT--RGDFIVVGDLMKSISLLIY 580 (774)
Q Consensus 507 ~~g~v~~i~~--~~~~-lv-~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~--~~~~I~vgD~~~Sv~~~~~ 580 (774)
+.|.+.+++. .+.. +. -+.|+.+-+|.++.. .-|.-.-...+ -++.|.. .||++++| ++++-.++.|
T Consensus 206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~g--GvThL~~~edGn~lfsG-aRk~dkIl~W 278 (406)
T KOG2919|consen 206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGG--GVTHLQWCEDGNKLFSG-ARKDDKILCW 278 (406)
T ss_pred ccceeeeeeccCCCCcceeeecccceeeeEecCCC----CceeeecccCC--CeeeEEeccCcCeeccc-ccCCCeEEEE
Confidence 4565555443 3443 43 356789999886421 11111111111 2345554 45655554 3444444455
Q ss_pred EccCC-----eEEEEeccCCcceeEEEEEeeCCeEE-EEccCCcEEEEeeCC
Q 004094 581 KHEEG-----AIEERARDYNANWMSAVEILDDDIYL-GAENNFNLFTVRKNS 626 (774)
Q Consensus 581 ~~~~~-----~l~~~a~D~~~~~v~~~~~l~~~~~l-~~D~~gnl~~l~~~~ 626 (774)
+.-.. +|.-.-.|...|-..... ..+.+| .+|.+|-+.+.+...
T Consensus 279 DiR~~~~pv~~L~rhv~~TNQRI~FDld--~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 279 DIRYSRDPVYALERHVGDTNQRILFDLD--PKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred eehhccchhhhhhhhccCccceEEEecC--CCCceeeccCCCccEEEEecCC
Confidence 43211 111111233333221110 123565 567899999988754
No 150
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=85.28 E-value=42 Score=33.34 Aligned_cols=172 Identities=12% Similarity=0.079 Sum_probs=91.3
Q ss_pred eEEEEEECCCceEEEEEECCCC-ceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeec
Q 004094 430 HFVRLLDDQTFEFISTYPLDTF-EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETK 508 (774)
Q Consensus 430 ~~l~l~d~~~~~~i~~~~~~~~-E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~ 508 (774)
+.|.-+|+.+.+.+-++.+++. ....+.. +. ...++++++ ..|.|+.|+...+++ +.+.+.+
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~---~~--~~~~v~~~~----------~~~~l~~~d~~tG~~--~W~~~~~ 65 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGPGIGGPVATA---VP--DGGRVYVAS----------GDGNLYALDAKTGKV--LWRFDLP 65 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSSSCSSEEETE---EE--ETTEEEEEE----------TTSEEEEEETTTSEE--EEEEECS
T ss_pred CEEEEEECCCCCEEEEEECCCCCCCccceE---EE--eCCEEEEEc----------CCCEEEEEECCCCCE--EEEeecc
Confidence 4688899999999999988542 2222111 11 134455554 458999998877754 4444545
Q ss_pred CceeEe-ccccCeEEEEEC-CEEEEEEeeecCCCchhhh-hhcccc--cceEEEEEEEeCCEEEEEeccccEEEEEEEcc
Q 004094 509 GAVYSL-NAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQ-SECGHH--GHILALYVQTRGDFIVVGDLMKSISLLIYKHE 583 (774)
Q Consensus 509 g~v~~i-~~~~~~lv~~~g-~~l~v~~~~~~~~~~~~l~-~~~~~~--~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~ 583 (774)
+++... ...++.++++.. +.++. ++. .+|+..+. ...... .........+.++++++++.-..+ +.++.+
T Consensus 66 ~~~~~~~~~~~~~v~v~~~~~~l~~--~d~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l--~~~d~~ 140 (238)
T PF13360_consen 66 GPISGAPVVDGGRVYVGTSDGSLYA--LDA-KTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKL--VALDPK 140 (238)
T ss_dssp SCGGSGEEEETTEEEEEETTSEEEE--EET-TTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEE--EEEETT
T ss_pred ccccceeeecccccccccceeeeEe--ccc-CCcceeeeeccccccccccccccCceEecCEEEEEeccCcE--EEEecC
Confidence 554443 334677776664 54554 432 24543332 111100 111223344558888888885554 456766
Q ss_pred CCeEEEEeccCCcce---------eEEEEEeeCCeEEEEccCCcEEEEe
Q 004094 584 EGAIEERARDYNANW---------MSAVEILDDDIYLGAENNFNLFTVR 623 (774)
Q Consensus 584 ~~~l~~~a~D~~~~~---------v~~~~~l~~~~~l~~D~~gnl~~l~ 623 (774)
.+++.--..-..+.. ..+...+.++.+.+++.+|.++.+.
T Consensus 141 tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 141 TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVD 189 (238)
T ss_dssp TTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEE
T ss_pred CCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEE
Confidence 666522221111111 1223334456777888888755553
No 151
>PHA02713 hypothetical protein; Provisional
Probab=84.96 E-value=19 Score=41.49 Aligned_cols=152 Identities=11% Similarity=0.088 Sum_probs=82.0
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEECCE------------------
Q 004094 467 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK------------------ 528 (774)
Q Consensus 467 ~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g~~------------------ 528 (774)
...+++|.... . .....+..|+...++.+.+.....+-.-.+++.++|+|++.-|..
T Consensus 352 g~IYviGG~~~---~--~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 352 DTIYAIGGQNG---T--NVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred CEEEEECCcCC---C--CCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence 46777776321 1 123457788887777776654433222234555688877655421
Q ss_pred ----E-EEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEE-Eecc---ccE-EEEEEEccC-CeEEEEeccCCcc
Q 004094 529 ----I-QLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVV-GDLM---KSI-SLLIYKHEE-GAIEERARDYNAN 597 (774)
Q Consensus 529 ----l-~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~v-gD~~---~Sv-~~~~~~~~~-~~l~~~a~D~~~~ 597 (774)
+ .++.|+... .+ +...+.+...-...++.+.++.|+| |... ... .+.+|+++. ++-..++.=+.+|
T Consensus 427 ~~~~~~~ve~YDP~t-d~--W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 427 DTHSSNKVIRYDTVN-NI--WETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred cccccceEEEECCCC-Ce--EeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 0 133343322 22 3323322222122345567787765 5332 111 356899987 7888888667777
Q ss_pred eeEEEEEeeCCeEEEEccCCcEEEEeeCC
Q 004094 598 WMSAVEILDDDIYLGAENNFNLFTVRKNS 626 (774)
Q Consensus 598 ~v~~~~~l~~~~~l~~D~~gnl~~l~~~~ 626 (774)
....+..+++.-++++..+|.-.+-.||+
T Consensus 504 ~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 504 SALHTILHDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred ccceeEEECCEEEEEeeecceeehhhcCc
Confidence 77677777655566555566444444554
No 152
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=84.91 E-value=76 Score=36.05 Aligned_cols=140 Identities=20% Similarity=0.247 Sum_probs=85.4
Q ss_pred CCCcEEEEe-CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEE
Q 004094 367 FPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 445 (774)
Q Consensus 367 ~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~ 445 (774)
..+.+..++ +..|.|.+++- +.--+.-.|+-.|..|.|.+.....++..++. .++++-.+. -.+.+
T Consensus 192 ~~di~aV~DW~qTLSFy~LsG--~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk----------~L~~fTR~G-vrLGT 258 (1081)
T KOG1538|consen 192 RNDILAVADWGQTLSFYQLSG--KQIGKDRALNFDPCCISYFTNGEYILLGGSDK----------QLSLFTRDG-VRLGT 258 (1081)
T ss_pred ccceEEEEeccceeEEEEecc--eeecccccCCCCchhheeccCCcEEEEccCCC----------ceEEEeecC-eEEee
Confidence 334555666 77888888874 33444557888999999999988877776654 566665432 22222
Q ss_pred E-ECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeC--------------CeE-----E-EEEE
Q 004094 446 Y-PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVED--------------GKL-----Q-LIAE 504 (774)
Q Consensus 446 ~-~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~--------------~kl-----~-~~~~ 504 (774)
+ +++ .. +-.+.+. .+.++++||+- .|.|--|++.- .+. + +++.
T Consensus 259 vg~~D--~W---IWtV~~~-PNsQ~v~~GCq----------DGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~ 322 (1081)
T KOG1538|consen 259 VGEQD--SW---IWTVQAK-PNSQYVVVGCQ----------DGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITE 322 (1081)
T ss_pred ccccc--ee---EEEEEEc-cCCceEEEEEc----------cCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhc
Confidence 2 221 11 1222222 35789999983 37777776650 000 0 1111
Q ss_pred ----EeecCceeEeccccCeEEEEECCEEEEEEee
Q 004094 505 ----KETKGAVYSLNAFNGKLLAAINQKIQLYKWM 535 (774)
Q Consensus 505 ----~~~~g~v~~i~~~~~~lv~~~g~~l~v~~~~ 535 (774)
..-+.-|.-|+-++++|.+-.-.+|.+|+..
T Consensus 323 qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~ 357 (1081)
T KOG1538|consen 323 QKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELY 357 (1081)
T ss_pred ceeeeeHHHHHHHHHhhhhhheecccceEEEEecc
Confidence 1224456667778999999999999999975
No 153
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=84.75 E-value=47 Score=33.46 Aligned_cols=186 Identities=17% Similarity=0.163 Sum_probs=96.1
Q ss_pred EEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC----CCceEEEEEEEEEcCCCc
Q 004094 392 IRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD----TFEYGCSILSCSFSDDSN 467 (774)
Q Consensus 392 ~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~----~~E~~~si~~~~~~~~~~ 467 (774)
.+.+.+.. |.-++++...+.++++... .+.++|+.+.+...-.... +.-.++.++ +..++.
T Consensus 34 ~~~~~~~~-~~G~~~~~~~g~l~v~~~~-----------~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~---vd~~G~ 98 (246)
T PF08450_consen 34 VEVIDLPG-PNGMAFDRPDGRLYVADSG-----------GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVA---VDPDGN 98 (246)
T ss_dssp EEEEESSS-EEEEEEECTTSEEEEEETT-----------CEEEEETTTTEEEEEEEEETTCSCTEEEEEEE---E-TTS-
T ss_pred EEEEecCC-CceEEEEccCCEEEEEEcC-----------ceEEEecCCCcEEEEeeccCCCcccCCCceEE---EcCCCC
Confidence 34466666 7788888444666666543 3566698877554444432 334445443 344333
Q ss_pred eEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cC-eEEEEE--CCEEEEEEeeecCCCchh
Q 004094 468 VYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAI--NQKIQLYKWMLRDDGTRE 543 (774)
Q Consensus 468 ~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~-~lv~~~--g~~l~v~~~~~~~~~~~~ 543 (774)
+.+++...... .....|++|.++.. ++++.+... + ..+..|+-- ++ .|+++- .++|+.|.++. .+ .+
T Consensus 99 --ly~t~~~~~~~-~~~~~g~v~~~~~~-~~~~~~~~~-~-~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~--~~-~~ 169 (246)
T PF08450_consen 99 --LYVTDSGGGGA-SGIDPGSVYRIDPD-GKVTVVADG-L-GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA--DG-GE 169 (246)
T ss_dssp --EEEEEECCBCT-TCGGSEEEEEEETT-SEEEEEEEE-E-SSEEEEEEETTSSEEEEEETTTTEEEEEEEET--TT-CC
T ss_pred --EEEEecCCCcc-ccccccceEEECCC-CeEEEEecC-c-ccccceEECCcchheeecccccceeEEEeccc--cc-cc
Confidence 66666543211 11112999888876 677766543 2 333444433 34 465553 46777766642 11 11
Q ss_pred hhhh---ccccc---ceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEe
Q 004094 544 LQSE---CGHHG---HILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEIL 605 (774)
Q Consensus 544 l~~~---~~~~~---~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l 605 (774)
+... ..... .+-.+.+...| .|+|++...+- +.+|+++...+..+. -+.+ .++++.|-
T Consensus 170 ~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~-I~~~~p~G~~~~~i~-~p~~-~~t~~~fg 233 (246)
T PF08450_consen 170 LSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGR-IVVFDPDGKLLREIE-LPVP-RPTNCAFG 233 (246)
T ss_dssp EEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTE-EEEEETTSCEEEEEE--SSS-SEEEEEEE
T ss_pred eeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCE-EEEECCCccEEEEEc-CCCC-CEEEEEEE
Confidence 2111 11111 12234444444 58888876663 567898855454444 3333 67777774
No 154
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=84.62 E-value=58 Score=34.44 Aligned_cols=101 Identities=17% Similarity=0.114 Sum_probs=62.5
Q ss_pred cCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeE
Q 004094 192 GGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSV 271 (774)
Q Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si 271 (774)
.+|++.++.-..|+..--.-.-....|+||+..|.+-.+. .. .++...+||+++||++..-.++.. +.. ...++
T Consensus 177 ~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~-~r-~las~skDg~vrIWd~~~~~~~~~--lsg--HT~~V 250 (480)
T KOG0271|consen 177 KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPP-CR-RLASSSKDGSVRIWDTKLGTCVRT--LSG--HTASV 250 (480)
T ss_pred cCCeEEEecCCCCCcccccccCcccceeEEeecccccCCC-cc-ceecccCCCCEEEEEccCceEEEE--ecc--Cccce
Confidence 3566666543233211111123457899999988654322 22 444566699999999876444332 211 12244
Q ss_pred EeeeecCeeEEEEEeCCCcEEEEEEec
Q 004094 272 LLCAFEGISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 272 ~~~~~~~~~~L~vgl~~G~l~~y~~~~ 298 (774)
-.+..+++.+++-|+.|+.+-+|+...
T Consensus 251 TCvrwGG~gliySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 251 TCVRWGGEGLIYSGSQDRTIKVWRALD 277 (480)
T ss_pred EEEEEcCCceEEecCCCceEEEEEccc
Confidence 446778889999999999999998764
No 155
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=84.52 E-value=69 Score=35.20 Aligned_cols=146 Identities=16% Similarity=0.245 Sum_probs=94.7
Q ss_pred cceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecC---C---------
Q 004094 233 SQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMK---T--------- 300 (774)
Q Consensus 233 ~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~---~--------- 300 (774)
.++++|=.- ||.+.+|.=+.. .+...++.-..|.-+++++ ....+++...+..|..|+.... +
T Consensus 145 ~~~IcVQS~-DG~L~~feqe~~--~f~~~lp~~llPgPl~Y~~--~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~ 219 (418)
T PF14727_consen 145 RDFICVQSM-DGSLSFFEQESF--AFSRFLPDFLLPGPLCYCP--RTDSFVTASSSWTLECYKYQDLASASEASSRQSGT 219 (418)
T ss_pred ceEEEEEec-CceEEEEeCCcE--EEEEEcCCCCCCcCeEEee--cCCEEEEecCceeEEEecHHHhhhccccccccccc
Confidence 567777666 999999985432 2344555545677676654 2355677777889999986311 0
Q ss_pred -------CccccceeeecCCCCeEEEEEEe-CCcceEEEecCCCeEEEecCCcEEEeeecccCceeeecccCC--CCCC-
Q 004094 301 -------GELTDRKKVSLGTQPITLRTFSS-KNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSA--AFPD- 369 (774)
Q Consensus 301 -------~~l~~~~~~~lG~~pv~l~~~~~-~~~~~v~~~~~~p~~l~~~~~~~~~~~~~~~~i~~~~~f~~~--~~~~- 369 (774)
..+...++..+|...+.+..++. ...+.|++.|+|..+...++|.+++..--.-...++++|... ..++
T Consensus 220 ~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~ 299 (418)
T PF14727_consen 220 EQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKDNGSLRFQKRLDYNPSCFCPYRVPWYNEPST 299 (418)
T ss_pred cccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEcCCCeEEEEEecCCceeeEEEEEeecccCCCC
Confidence 01222334578999888876653 256789999999999999888887764333445677777662 2222
Q ss_pred --cEEEE-eCCeEEEEE
Q 004094 370 --SLAIA-KEGELTIGT 383 (774)
Q Consensus 370 --~l~~~-~~~~l~i~~ 383 (774)
.++++ +++.|.+.+
T Consensus 300 ~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 300 RLNLLVGTHTGTLLVYE 316 (418)
T ss_pred ceEEEEEecCCeEEEEe
Confidence 24444 467777766
No 156
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=84.23 E-value=54 Score=33.79 Aligned_cols=199 Identities=15% Similarity=0.219 Sum_probs=107.7
Q ss_pred CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEE----EEECCCCceEEEEEEEEEcCCCceEEEEEe
Q 004094 399 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIS----TYPLDTFEYGCSILSCSFSDDSNVYYCVGT 474 (774)
Q Consensus 399 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~----~~~~~~~E~~~si~~~~~~~~~~~~i~VGT 474 (774)
..+.-++|+.+.+.++-+|.+. .|++.+.+.|+.-. +..++.+ +++-+ .|..+-+ -++|..
T Consensus 87 ~~vt~~~FsSdGK~lat~~~Dr----------~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V---~FapDc~-s~vv~~ 151 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGDR----------SIRLWDVRDFENKEHRCIRQNVEYD-HPTRV---VFAPDCK-SVVVSV 151 (420)
T ss_pred CceeeeEEcCCCceeEEEeCCc----------eEEEEecchhhhhhhhHhhccccCC-CceEE---EECCCcc-eEEEEE
Confidence 3566789999999999888775 78888877654321 1122222 33332 2443323 344444
Q ss_pred eeeCCCCCCCcceEEEEEEEeC---CeE--EEE------EEEeecCceeEecccc-C-eEE-EEECCEEEEEEeeecCCC
Q 004094 475 AYVLPEENEPTKGRILVFIVED---GKL--QLI------AEKETKGAVYSLNAFN-G-KLL-AAINQKIQLYKWMLRDDG 540 (774)
Q Consensus 475 ~~~~~~e~~~~~Grl~v~~i~~---~kl--~~~------~~~~~~g~v~~i~~~~-~-~lv-~~~g~~l~v~~~~~~~~~ 540 (774)
. ....|++|...+ +++ ..+ +....+-++..+-.-+ + +|. ++.+++|.+|.+. |
T Consensus 152 ~---------~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk----G 218 (420)
T KOG2096|consen 152 K---------RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK----G 218 (420)
T ss_pred c---------cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC----C
Confidence 3 123778887762 221 111 1122334444443333 2 343 4567899997753 2
Q ss_pred chhhhhhcccccceEEEEEEEeCCEEEEEeccccEEEEE--EEccCCeEEEEeccCC----cceeEEEEEeeCC-eEEEE
Q 004094 541 TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLI--YKHEEGAIEERARDYN----ANWMSAVEILDDD-IYLGA 613 (774)
Q Consensus 541 ~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~--~~~~~~~l~~~a~D~~----~~~v~~~~~l~~~-~~l~~ 613 (774)
+.|...-..+...+-..++-+|.+|+++-..--|.++. |+. ++.+.++.|-+. .--|++..|-.+. .++..
T Consensus 219 -q~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k-dG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 219 -QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK-DGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred -ceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEecc-CcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 12222211122222233556788998887777776654 333 344544444432 2345556665443 47777
Q ss_pred ccCCcEEEEeeCCC
Q 004094 614 ENNFNLFTVRKNSE 627 (774)
Q Consensus 614 D~~gnl~~l~~~~~ 627 (774)
.++|...++..+-.
T Consensus 297 SkDG~wriwdtdVr 310 (420)
T KOG2096|consen 297 SKDGKWRIWDTDVR 310 (420)
T ss_pred ecCCcEEEeeccce
Confidence 89999999987653
No 157
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=84.23 E-value=26 Score=35.03 Aligned_cols=144 Identities=15% Similarity=0.217 Sum_probs=89.7
Q ss_pred cccEEEEe-cCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeC
Q 004094 400 HPRRICHQ-EQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 478 (774)
Q Consensus 400 tp~~i~y~-~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~ 478 (774)
.+..++.+ ++.+.|+.++... .+++.|..+.+.+...+..-.+. . ..|. ...+|++||-..
T Consensus 66 svdql~w~~~~~d~~atas~dk----------~ir~wd~r~~k~~~~i~~~~eni-~--i~ws---p~g~~~~~~~kd-- 127 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDK----------TIRIWDIRSGKCTARIETKGENI-N--ITWS---PDGEYIAVGNKD-- 127 (313)
T ss_pred chhhheeCCCCCcceEEecCCc----------eEEEEEeccCcEEEEeeccCcce-E--EEEc---CCCCEEEEecCc--
Confidence 34455554 4556777777654 79999998888888877754443 2 2342 235788888632
Q ss_pred CCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc--cCeEEEEEC-CEEEEEEeeecCCCchhhhhhcccccce-
Q 004094 479 PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF--NGKLLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHI- 554 (774)
Q Consensus 479 ~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~--~~~lv~~~g-~~l~v~~~~~~~~~~~~l~~~~~~~~~~- 554 (774)
-+|.++++.+ .+.+.+.+++--+..++-- ++..+...| .+|.|.+|. .|.++.....++
T Consensus 128 --------D~it~id~r~--~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp-------sLkpv~si~AH~s 190 (313)
T KOG1407|consen 128 --------DRITFIDART--YKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP-------SLKPVQSIKAHPS 190 (313)
T ss_pred --------ccEEEEEecc--cceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecc-------ccccccccccCCc
Confidence 3666776644 4445555556555555543 445666777 789998884 244443333333
Q ss_pred --EEEEEEEeCCEEEEEeccccEEEE
Q 004094 555 --LALYVQTRGDFIVVGDLMKSISLL 578 (774)
Q Consensus 555 --~~~~l~~~~~~I~vgD~~~Sv~~~ 578 (774)
+.+.+.-.|.|..+|-+--.+++.
T Consensus 191 nCicI~f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 191 NCICIEFDPDGRYFATGSADALVSLW 216 (313)
T ss_pred ceEEEEECCCCceEeeccccceeecc
Confidence 345555578899998877777773
No 158
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=84.11 E-value=57 Score=33.97 Aligned_cols=191 Identities=16% Similarity=0.138 Sum_probs=96.2
Q ss_pred eEEEEEecCceE-EEEecCCCCeeeeeecCccccCcceeeee-cCCCeEEEEecCcEEEEecCCCc--eeeeEeCCCCCc
Q 004094 101 TFLVVSFISETR-ILAMNLEDELEETEIEGFCSQTQTLFCHD-AIYNQLVQVTSGSVRLVSSTSRE--LRNEWKSPPGYS 176 (774)
Q Consensus 101 ~~li~S~~~~T~-vl~~~~~~~~~e~~~~~f~~~~~Tl~~~~-~~~~~~vQVT~~~i~l~~~~~~~--~~~~~~~~~~~~ 176 (774)
..++++..+.+. +|.....+-+++..-+.=.++. +=+++. -+++.+.--|...||+++....+ ....|....+..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~-vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNG-VRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccc-eEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 458888888774 4443332334443211111111 111111 12233333445589999876532 234454433333
Q ss_pred EEEEEE--CCCEEEEEE----cCCeEEEEEEcC-ceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEE
Q 004094 177 VNVATA--NASQVLLAT----GGGHLVYLEIGD-GILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249 (774)
Q Consensus 177 I~~a~~--~~~~lvv~~----~~~~~~~~~~~~-~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~ 249 (774)
-.+-+. ++.++.... +.-.++++.+.+ .++...-.-....+|+++.|-|. ..+.++-|.- ||-+.+|
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-----~pnlLlSGSv-DGLvnlf 193 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-----DPNLLLSGSV-DGLVNLF 193 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-----CCCeEEeecc-cceEEee
Confidence 333333 333333322 123455555543 22111111245578999999763 3567777777 9999999
Q ss_pred ECCCCCeeEEecCCC-ccCceeEEeeeecCee--EEEEEeCCCcEEEEEEecCC
Q 004094 250 SLPDLNLITKEHLGG-EIIPRSVLLCAFEGIS--YLLCALGDGHLLNFLLNMKT 300 (774)
Q Consensus 250 ~l~~~~~~~~~~l~~-~~~p~si~~~~~~~~~--~L~vgl~~G~l~~y~~~~~~ 300 (774)
++..-.. ..+|-. --...||..+.+.++- .++|-+-.+.+..|++...+
T Consensus 194 D~~~d~E--eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 194 DTKKDNE--EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred ecCCCcc--hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 9853110 001100 0012345444443333 58999999999999998754
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=84.05 E-value=68 Score=34.75 Aligned_cols=202 Identities=17% Similarity=0.193 Sum_probs=93.0
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeE-EecCCCccCceeEEee--ee--cCeeEEEEEeC
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLIT-KEHLGGEIIPRSVLLC--AF--EGISYLLCALG 287 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~-~~~l~~~~~p~si~~~--~~--~~~~~L~vgl~ 287 (774)
..+..|+|+++-|.. ....+++|-- .|.|-+|++...+... ..-+ ..|+|.-+. .+ .+...++..+-
T Consensus 184 v~~~Rit~l~fHPt~----~~~lva~GdK-~G~VG~Wn~~~~~~d~d~v~~---f~~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTE----NRKLVAVGDK-GGQVGLWNFGTQEKDKDGVYL---FTPHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred ecccceEEEEecccC----cceEEEEccC-CCcEEEEecCCCCCccCceEE---eccCCccccceEecCCChhheeeecc
Confidence 346778999997632 1366777755 8999999995222210 0011 134433222 11 13456777888
Q ss_pred CCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcc-eEEEecCCC--eEE-EecCCc-EEEeeecccCceeeecc
Q 004094 288 DGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTT-HVFAASDRP--TVI-YSSNKK-LLYSNVNLKEVSHMCPF 362 (774)
Q Consensus 288 ~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~-~v~~~~~~p--~~l-~~~~~~-~~~~~~~~~~i~~~~~f 362 (774)
||.+-.-.+.....+. ...+-+.-..|..++...++ .|+...+-- .++ ...++. +.-.-++..-|.+++ +
T Consensus 256 DGtiR~~D~~~~i~e~----v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~-~ 330 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEE----VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA-L 330 (498)
T ss_pred CceeeeeeecchhhHH----HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceee-c
Confidence 9987665554311110 00010122233333322222 233322222 111 111111 111111112232222 1
Q ss_pred cCCCCCCcEEEEe-CCeEEEEEEcCCC-C--eEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECC
Q 004094 363 NSAAFPDSLAIAK-EGELTIGTIDDIQ-K--LHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQ 438 (774)
Q Consensus 363 ~~~~~~~~l~~~~-~~~l~i~~l~~~~-~--~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~ 438 (774)
++.+|..++-+. +..++|..+-... + .....++=...+....|+|.+..++.-|.+. .|+++|..
T Consensus 331 -NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~----------~IRv~dss 399 (498)
T KOG4328|consen 331 -NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN----------EIRVFDSS 399 (498)
T ss_pred -CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC----------ceEEeecc
Confidence 234454444443 5666677665543 1 1233333344566677899888844444443 78888874
No 160
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=83.42 E-value=24 Score=40.62 Aligned_cols=112 Identities=11% Similarity=0.122 Sum_probs=73.9
Q ss_pred cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCC
Q 004094 400 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 479 (774)
Q Consensus 400 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~ 479 (774)
.|..+.-+. .+.++++-. .++.+.+.|-..........|+.++.|..+. |....++...++||-.
T Consensus 31 ~~~li~gss-~~k~a~V~~---------~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLD-Wtst~d~qsiLaVGf~---- 95 (631)
T PF12234_consen 31 NPSLISGSS-IKKIAVVDS---------SRSELTIWDTRSGVLEYEESFSEDDPIRDLD-WTSTPDGQSILAVGFP---- 95 (631)
T ss_pred CcceEeecc-cCcEEEEEC---------CCCEEEEEEcCCcEEEEeeeecCCCceeece-eeecCCCCEEEEEEcC----
Confidence 455665555 444444422 2468999998877766777888888887775 6666678899999974
Q ss_pred CCCCCcceEEEEEEEe-----CC-----eEEEEEEEe-ecCceeEeccc-cCeEEEEECCEEEEEE
Q 004094 480 EENEPTKGRILVFIVE-----DG-----KLQLIAEKE-TKGAVYSLNAF-NGKLLAAINQKIQLYK 533 (774)
Q Consensus 480 ~e~~~~~Grl~v~~i~-----~~-----kl~~~~~~~-~~g~v~~i~~~-~~~lv~~~g~~l~v~~ 533 (774)
.++.+|.-. +. .++.+.-.+ .+.||.+.+=. +|.+++|.|++++||+
T Consensus 96 -------~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~d 154 (631)
T PF12234_consen 96 -------HHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFD 154 (631)
T ss_pred -------cEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEEC
Confidence 245555332 11 233333333 34677776655 6789999999999986
No 161
>PHA03098 kelch-like protein; Provisional
Probab=83.38 E-value=39 Score=38.77 Aligned_cols=135 Identities=10% Similarity=0.032 Sum_probs=68.4
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEEC--------CEEEEEEeeecC
Q 004094 467 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN--------QKIQLYKWMLRD 538 (774)
Q Consensus 467 ~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g--------~~l~v~~~~~~~ 538 (774)
...+++|.... ......+..|+...++.+.+.....+..-.+.+.++|+|++.-| +.+..|+. .
T Consensus 343 ~~lyv~GG~~~-----~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~--~- 414 (534)
T PHA03098 343 NRIYVIGGIYN-----SISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSL--N- 414 (534)
T ss_pred CEEEEEeCCCC-----CEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeC--C-
Confidence 45777775321 12345677888777777665543333223344556888776655 23455543 2
Q ss_pred CCchhhhhhcccccceEEEEEEEeCCEEEE-Eeccc------cEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEE
Q 004094 539 DGTRELQSECGHHGHILALYVQTRGDFIVV-GDLMK------SISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYL 611 (774)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~l~~~~~~I~v-gD~~~------Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l 611 (774)
.++ +.............+..+.+++|++ |-... --.+..|+++.++-..++.-+.+++-.++..+++..++
T Consensus 415 t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv 492 (534)
T PHA03098 415 TNK--WSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYV 492 (534)
T ss_pred CCe--eeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEE
Confidence 222 2222222211122334456776665 32110 01267788888777777655556655555455433333
No 162
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=83.06 E-value=65 Score=33.84 Aligned_cols=248 Identities=13% Similarity=0.151 Sum_probs=130.2
Q ss_pred cCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCC-CeeEEecCCCccCcee
Q 004094 192 GGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDL-NLITKEHLGGEIIPRS 270 (774)
Q Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~-~~~~~~~l~~~~~p~s 270 (774)
+.+.+..|...++++..- -.-...-+-.+++.. +...++.+..|-.+.+|++... +++ ...+.-+....+
T Consensus 128 ~d~tikv~D~~tg~~e~~-LrGHt~sv~di~~~a-------~Gk~l~tcSsDl~~~LWd~~~~~~c~-ks~~gh~h~vS~ 198 (406)
T KOG0295|consen 128 EDATIKVFDTETGELERS-LRGHTDSVFDISFDA-------SGKYLATCSSDLSAKLWDFDTFFRCI-KSLIGHEHGVSS 198 (406)
T ss_pred CCceEEEEEccchhhhhh-hhccccceeEEEEec-------CccEEEecCCccchhheeHHHHHHHH-HHhcCcccceee
Confidence 467777777666666221 112223355556642 2345566666766888887652 221 111222344567
Q ss_pred EEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCC-CeEEEEEEeCCcceEEEecCCCeEE----EecC--
Q 004094 271 VLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQ-PITLRTFSSKNTTHVFAASDRPTVI----YSSN-- 343 (774)
Q Consensus 271 i~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~-pv~l~~~~~~~~~~v~~~~~~p~~l----~~~~-- 343 (774)
+.+.+.+ .+++-..+|-.+..++++.. ...+..-|-. =|++.. ...+..+++.|+...-+ ...+
T Consensus 199 V~f~P~g--d~ilS~srD~tik~We~~tg-----~cv~t~~~h~ewvr~v~--v~~DGti~As~s~dqtl~vW~~~t~~~ 269 (406)
T KOG0295|consen 199 VFFLPLG--DHILSCSRDNTIKAWECDTG-----YCVKTFPGHSEWVRMVR--VNQDGTIIASCSNDQTLRVWVVATKQC 269 (406)
T ss_pred EEEEecC--CeeeecccccceeEEecccc-----eeEEeccCchHhEEEEE--ecCCeeEEEecCCCceEEEEEeccchh
Confidence 7777765 78888889999988888752 1111111111 144433 33445677777554322 2222
Q ss_pred -CcEEEeeecccCceeeecccC-----CCCCC----cEE--EEeCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCC
Q 004094 344 -KKLLYSNVNLKEVSHMCPFNS-----AAFPD----SLA--IAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSR 411 (774)
Q Consensus 344 -~~~~~~~~~~~~i~~~~~f~~-----~~~~~----~l~--~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~ 411 (774)
..++-+.... ...+.+|+.. ++-++ -++ ...+..++|..+++. .....-...+.=++-++++|..+
T Consensus 270 k~~lR~hEh~v-Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~ghdnwVr~~af~p~Gk 347 (406)
T KOG0295|consen 270 KAELREHEHPV-ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGHDNWVRGVAFSPGGK 347 (406)
T ss_pred hhhhhccccce-EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEecccceeeeeEEcCCCe
Confidence 1122111110 1122333321 11111 122 234788999988875 22223334455678899998755
Q ss_pred EEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEe
Q 004094 412 TFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGT 474 (774)
Q Consensus 412 ~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT 474 (774)
|++.|.+. ..|++.|-++.+.+...+ ++|...... -|.. ..+|++-|.
T Consensus 348 -yi~ScaDD---------ktlrvwdl~~~~cmk~~~--ah~hfvt~l--Dfh~-~~p~VvTGs 395 (406)
T KOG0295|consen 348 -YILSCADD---------KTLRVWDLKNLQCMKTLE--AHEHFVTSL--DFHK-TAPYVVTGS 395 (406)
T ss_pred -EEEEEecC---------CcEEEEEeccceeeeccC--CCcceeEEE--ecCC-CCceEEecc
Confidence 77777664 489999998888776555 555543222 2332 345655453
No 163
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=83.03 E-value=14 Score=38.14 Aligned_cols=108 Identities=19% Similarity=0.285 Sum_probs=67.5
Q ss_pred EEEEEcCC-CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCe--EEEEE--CCEEEEE
Q 004094 458 LSCSFSDD-SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK--LLAAI--NQKIQLY 532 (774)
Q Consensus 458 ~~~~~~~~-~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~--lv~~~--g~~l~v~ 532 (774)
+.|.+... +.+|+|+|. .+|-|+++++.++++.--. ..+-++|..|.....+ |+.+. .+.|+++
T Consensus 95 csw~yd~~~~~p~la~~G----------~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGG----------YLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLW 163 (385)
T ss_pred EEEEecCCCCCeeEEeec----------ceeEEEEEecchhhhccce-eccCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence 45666554 689999886 4699999998866543211 2345677777666433 55444 3678887
Q ss_pred EeeecCCCchhhhh-hc---ccccceEEEEEEEeCCEEEEEeccccEEEEEEE
Q 004094 533 KWMLRDDGTRELQS-EC---GHHGHILALYVQTRGDFIVVGDLMKSISLLIYK 581 (774)
Q Consensus 533 ~~~~~~~~~~~l~~-~~---~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~ 581 (774)
... ++ ..+. .. .+...+..+..+..|++|+-+-+-+|+.+.+.+
T Consensus 164 nI~--~~---~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 164 NIQ--TD---VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred ecc--CC---eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence 753 11 1111 11 222234445555678899999999999998766
No 164
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=82.72 E-value=4.8 Score=40.82 Aligned_cols=137 Identities=14% Similarity=0.194 Sum_probs=76.8
Q ss_pred CCeEEEEEEcCCC-CeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceE
Q 004094 376 EGELTIGTIDDIQ-KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYG 454 (774)
Q Consensus 376 ~~~l~i~~l~~~~-~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~ 454 (774)
++.+++..+.... +--.|-+.=-+.++.|.|||....++|++.++ .++|+|-.|++..-+-. +...+-
T Consensus 193 D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp----------~~rlYdv~T~Qcfvsan-Pd~qht 261 (430)
T KOG0640|consen 193 DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHP----------TLRLYDVNTYQCFVSAN-PDDQHT 261 (430)
T ss_pred CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCC----------ceeEEeccceeEeeecC-cccccc
Confidence 5566666554321 11111112223466788999998888888665 79999999887654433 333333
Q ss_pred EEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc--cCeEEEEECC--EEE
Q 004094 455 CSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF--NGKLLAAINQ--KIQ 530 (774)
Q Consensus 455 ~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~--~~~lv~~~g~--~l~ 530 (774)
-++..+..... ...++-|. ..|.|.+|+=..+++..-....+.|+-.+-+.| +++.+.+.|. .++
T Consensus 262 ~ai~~V~Ys~t-~~lYvTaS----------kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vk 330 (430)
T KOG0640|consen 262 GAITQVRYSST-GSLYVTAS----------KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVK 330 (430)
T ss_pred cceeEEEecCC-ccEEEEec----------cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceee
Confidence 34444555542 33444333 458898887654443333333445544333444 6777766664 556
Q ss_pred EEEe
Q 004094 531 LYKW 534 (774)
Q Consensus 531 v~~~ 534 (774)
+|++
T Consensus 331 LWEi 334 (430)
T KOG0640|consen 331 LWEI 334 (430)
T ss_pred eeee
Confidence 6554
No 165
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=82.64 E-value=41 Score=38.85 Aligned_cols=190 Identities=13% Similarity=0.111 Sum_probs=105.8
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeEEEEEECC--CceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCC
Q 004094 404 ICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQ--TFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEE 481 (774)
Q Consensus 404 i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~--~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e 481 (774)
++.. ....|+++.... .....+.+..+||. +|..+....-.- .....+.+ ....+|||-....
T Consensus 328 ~~~~-~~~lYv~GG~~~----~~~~l~~ve~YD~~~~~W~~~a~M~~~R----~~~~v~~l---~g~iYavGG~dg~--- 392 (571)
T KOG4441|consen 328 VAVL-NGKLYVVGGYDS----GSDRLSSVERYDPRTNQWTPVAPMNTKR----SDFGVAVL---DGKLYAVGGFDGE--- 392 (571)
T ss_pred EEEE-CCEEEEEccccC----CCcccceEEEecCCCCceeccCCccCcc----ccceeEEE---CCEEEEEeccccc---
Confidence 4434 335677665441 11234678888884 465543222111 11112222 2567788864411
Q ss_pred CCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEEC--------CEEEEEEeeecCCCchhhhhhcccccc
Q 004094 482 NEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN--------QKIQLYKWMLRDDGTRELQSECGHHGH 553 (774)
Q Consensus 482 ~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g--------~~l~v~~~~~~~~~~~~l~~~~~~~~~ 553 (774)
..-..+-.|+...++.+.+......-.=.+++.++|+|++.-| +.+..|+ .. .++++.. +.+...
T Consensus 393 --~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YD--P~-t~~W~~~--~~M~~~ 465 (571)
T KOG4441|consen 393 --KSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYD--PE-TNTWTLI--APMNTR 465 (571)
T ss_pred --cccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEc--CC-CCceeec--CCcccc
Confidence 1223556666667788888876665555677778999888777 3444544 22 2334433 322222
Q ss_pred eEEEEEEEeCCEEEE-Eec-----cccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccCC
Q 004094 554 ILALYVQTRGDFIVV-GDL-----MKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNF 617 (774)
Q Consensus 554 ~~~~~l~~~~~~I~v-gD~-----~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~g 617 (774)
-....+.+.+++|++ |.. .++ +-+|+++.++-..++--..++....+..++...++++..+|
T Consensus 466 R~~~g~a~~~~~iYvvGG~~~~~~~~~--VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 466 RSGFGVAVLNGKIYVVGGFDGTSALSS--VERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDG 533 (571)
T ss_pred cccceEEEECCEEEEECCccCCCccce--EEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccC
Confidence 122335677887775 442 333 55789998888888777777776666666655555443333
No 166
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=81.54 E-value=26 Score=37.26 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=57.6
Q ss_pred cCcEEEEecCCCceeeeEeCCCCCcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEE---EeccCCceeEEEEeCCC
Q 004094 152 SGSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEV---KHAQLEYEISCLDINPI 226 (774)
Q Consensus 152 ~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~---~~~~l~~~is~l~~~~~ 226 (774)
.+.||+++..+.....+ .|.|..|++.+.+ +..++.+..+..+-.+.+....+... .-+...++.+..-|+|
T Consensus 321 DkkvRfwD~Rs~~~~~s--v~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp- 397 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRS--VPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP- 397 (459)
T ss_pred ccceEEEeccCCceeeE--eecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-
Confidence 45578877554444443 3566688888865 33444444345554444332222221 1123345566666755
Q ss_pred CCCCCCcceEEEEEecCCEEEEEECCCCCeeEE
Q 004094 227 GENPSYSQIAAVGMWTDISVRIFSLPDLNLITK 259 (774)
Q Consensus 227 ~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~ 259 (774)
...|++.|.. ||+++||++.+.++...
T Consensus 398 -----d~~YvaAGS~-dgsv~iW~v~tgKlE~~ 424 (459)
T KOG0288|consen 398 -----DGSYVAAGSA-DGSVYIWSVFTGKLEKV 424 (459)
T ss_pred -----CCceeeeccC-CCcEEEEEccCceEEEE
Confidence 2678998988 99999999987555443
No 167
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.26 E-value=15 Score=38.93 Aligned_cols=144 Identities=14% Similarity=0.098 Sum_probs=80.9
Q ss_pred EEEEeCCeEEEEEEcCCCCeEEEE-EeCCCcccEEEEe--cCCCEEEEEEeccCCCCCceeeeEEEEEECCCceE----E
Q 004094 371 LAIAKEGELTIGTIDDIQKLHIRS-IPLGEHPRRICHQ--EQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEF----I 443 (774)
Q Consensus 371 l~~~~~~~l~i~~l~~~~~~~~~~-i~l~~tp~~i~y~--~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~----i 443 (774)
++.+..+.+++....+...|..+. ..-++...++-|. +....+.++.... ....+...+-..|.- .
T Consensus 201 lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~-------~~~~v~~~~~~~w~~~~~l~ 273 (398)
T KOG0771|consen 201 LASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQF-------PGGGVRLCDISLWSGSNFLR 273 (398)
T ss_pred EEEecCCceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecC-------CCCceeEEEeeeeccccccc
Confidence 556677788888887763332222 1111222222222 2223444444332 112344444333332 1
Q ss_pred EEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEecccc--CeE
Q 004094 444 STYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFN--GKL 521 (774)
Q Consensus 444 ~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~--~~l 521 (774)
.+-....+|.+.|+.+ ++..+|+++||. .|.+.+|+..+-+.-+..++.+.+-||+++-.. .++
T Consensus 274 ~~~~~~~~~siSsl~V----S~dGkf~AlGT~----------dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~ 339 (398)
T KOG0771|consen 274 LRKKIKRFKSISSLAV----SDDGKFLALGTM----------DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYL 339 (398)
T ss_pred hhhhhhccCcceeEEE----cCCCcEEEEecc----------CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcc
Confidence 2223445678888764 346789999993 589999998765555666677888999888652 333
Q ss_pred E-EEECCEEEEEEee
Q 004094 522 L-AAINQKIQLYKWM 535 (774)
Q Consensus 522 v-~~~g~~l~v~~~~ 535 (774)
. ++.+++..+..+.
T Consensus 340 ~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 340 ASVSSDNEAAVTKLA 354 (398)
T ss_pred cccccCCceeEEEEe
Confidence 3 5666777777664
No 168
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=80.70 E-value=37 Score=38.24 Aligned_cols=152 Identities=15% Similarity=0.126 Sum_probs=83.2
Q ss_pred CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEE-----EEEEEeecCceeEeccccC--eEEEEEC-CEEEEEEeeec
Q 004094 466 SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQ-----LIAEKETKGAVYSLNAFNG--KLLAAIN-QKIQLYKWMLR 537 (774)
Q Consensus 466 ~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~-----~~~~~~~~g~v~~i~~~~~--~lv~~~g-~~l~v~~~~~~ 537 (774)
.++.|+|+- ..|.+.+|+....+.+ +..-..+.++|..+....| .||.+.| +++++|+....
T Consensus 63 ~eHiLavad----------E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 63 KEHILAVAD----------EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccceEEEec----------CCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 467777774 2388889988744333 3333456889999888855 3666666 78899776421
Q ss_pred CC-Cc-------hhhhhhcccccceEEEEEEEeCCEEEEEeccccE--EEEEE--------EccCCeEEEEec-------
Q 004094 538 DD-GT-------RELQSECGHHGHILALYVQTRGDFIVVGDLMKSI--SLLIY--------KHEEGAIEERAR------- 592 (774)
Q Consensus 538 ~~-~~-------~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv--~~~~~--------~~~~~~l~~~a~------- 592 (774)
.. |. .-+...|++.....+...--.++-|++-|++-.- .+.+| +..+......++
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 11 11 1122234444433333333455667777776654 11111 110101111111
Q ss_pred --cCCcceeEEEEEeeCCeEEEEcc-CCcEEEEeeCCC
Q 004094 593 --DYNANWMSAVEILDDDIYLGAEN-NFNLFTVRKNSE 627 (774)
Q Consensus 593 --D~~~~~v~~~~~l~~~~~l~~D~-~gnl~~l~~~~~ 627 (774)
....-.||.+.|.|+++++.+-. |+.|.++++...
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence 11122467778888888875444 899988887543
No 169
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=80.69 E-value=93 Score=33.99 Aligned_cols=105 Identities=12% Similarity=0.128 Sum_probs=60.1
Q ss_pred ECCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEE-EeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEe
Q 004094 182 ANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCL-DINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKE 260 (774)
Q Consensus 182 ~~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l-~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~ 260 (774)
+.++.+++...++.+..|+..+|++ +++.++..++.+- .+ ....+++++. ++.+.-++..+.+.++..
T Consensus 118 v~~~~v~v~~~~g~l~ald~~tG~~--~W~~~~~~~~~ssP~v--------~~~~v~v~~~-~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 118 VAGGKVYIGSEKGQVYALNAEDGEV--AWQTKVAGEALSRPVV--------SDGLVLVHTS-NGMLQALNESDGAVKWTV 186 (394)
T ss_pred EECCEEEEEcCCCEEEEEECCCCCC--cccccCCCceecCCEE--------ECCEEEEECC-CCEEEEEEccCCCEeeee
Confidence 4567777777677887777655543 3334444433221 11 1345667666 888888898888888765
Q ss_pred cCCCccC----ceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCcc
Q 004094 261 HLGGEII----PRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGEL 303 (774)
Q Consensus 261 ~l~~~~~----p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l 303 (774)
....... ..+-++. ...++++..+|.+..+.. .+|+.
T Consensus 187 ~~~~~~~~~~~~~sP~v~----~~~v~~~~~~g~v~a~d~--~~G~~ 227 (394)
T PRK11138 187 NLDVPSLTLRGESAPATA----FGGAIVGGDNGRVSAVLM--EQGQL 227 (394)
T ss_pred cCCCCcccccCCCCCEEE----CCEEEEEcCCCEEEEEEc--cCChh
Confidence 5431100 0011111 235888999998876554 34543
No 170
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=80.45 E-value=74 Score=32.71 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=42.6
Q ss_pred eEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCee---EEecCCCccC--ceeEEeeeec-CeeEEEEEeCCCcE
Q 004094 218 ISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLI---TKEHLGGEII--PRSVLLCAFE-GISYLLCALGDGHL 291 (774)
Q Consensus 218 is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~---~~~~l~~~~~--p~si~~~~~~-~~~~L~vgl~~G~l 291 (774)
+-|-.|+| ...+++-|.- ||-|++|+.-+.++- ..++-. .+. -..+..+.+. +...|-.|..||.+
T Consensus 216 ~EcA~FSP------DgqyLvsgSv-DGFiEVWny~~GKlrKDLkYQAqd-~fMMmd~aVlci~FSRDsEMlAsGsqDGkI 287 (508)
T KOG0275|consen 216 VECARFSP------DGQYLVSGSV-DGFIEVWNYTTGKLRKDLKYQAQD-NFMMMDDAVLCISFSRDSEMLASGSQDGKI 287 (508)
T ss_pred hhheeeCC------CCceEeeccc-cceeeeehhccchhhhhhhhhhhc-ceeecccceEEEeecccHHHhhccCcCCcE
Confidence 44555654 2578877777 999999997543321 011100 011 0112222333 34557779999999
Q ss_pred EEEEEecC
Q 004094 292 LNFLLNMK 299 (774)
Q Consensus 292 ~~y~~~~~ 299 (774)
-+|++...
T Consensus 288 KvWri~tG 295 (508)
T KOG0275|consen 288 KVWRIETG 295 (508)
T ss_pred EEEEEecc
Confidence 99998763
No 171
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=80.34 E-value=1.1e+02 Score=34.84 Aligned_cols=180 Identities=14% Similarity=0.143 Sum_probs=96.6
Q ss_pred ceEEEEEecCceE-EEEecCCCCeeeeeecCccccCcceeeeecCCCeEEEEe-cCcEEEEecCCCceeeeEeCCCCCcE
Q 004094 100 DTFLVVSFISETR-ILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVT-SGSVRLVSSTSRELRNEWKSPPGYSV 177 (774)
Q Consensus 100 ~~~li~S~~~~T~-vl~~~~~~~~~e~~~~~f~~~~~Tl~~~~~~~~~~vQVT-~~~i~l~~~~~~~~~~~~~~~~~~~I 177 (774)
+.+++....++|. ++..... .+......|=.-...+++... +++.++=.. ...+|+-+..+++....... ..++
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~-~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g--h~st 293 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNG-YLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQG--HTSS 293 (537)
T ss_pred cCeEEecCCCceeEEeecccc-eEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecC--CCce
Confidence 3455566666666 4333222 111111222222334444433 233333333 66777777666555444321 1233
Q ss_pred EEEEECCCEEEEE-EcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCe
Q 004094 178 NVATANASQVLLA-TGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNL 256 (774)
Q Consensus 178 ~~a~~~~~~lvv~-~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~ 256 (774)
..+-......+++ ..++.+..+++.++....+..- ....|-|+.+. ...++.|+. +++|.+|+...+++
T Consensus 294 v~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~--------~~~lvsgs~-d~~v~VW~~~~~~c 363 (537)
T KOG0274|consen 294 VRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD--------EPLLVSGSY-DGTVKVWDPRTGKC 363 (537)
T ss_pred EEEEEccCceEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEec--------CCEEEEEec-CceEEEEEhhhcee
Confidence 3333333344444 3356777778887654443222 56778898873 577888888 99999999887666
Q ss_pred eEEecCCCc-cCceeEEeeeecCeeEEEEEeCCCcEEEEEEec
Q 004094 257 ITKEHLGGE-IIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 257 ~~~~~l~~~-~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 298 (774)
+.+ +..- .-..++ .+++..+++-|.-|+.+.++.+..
T Consensus 364 l~s--l~gH~~~V~sl---~~~~~~~~~Sgs~D~~IkvWdl~~ 401 (537)
T KOG0274|consen 364 LKS--LSGHTGRVYSL---IVDSENRLLSGSLDTTIKVWDLRT 401 (537)
T ss_pred eee--ecCCcceEEEE---EecCcceEEeeeeccceEeecCCc
Confidence 543 2210 011222 122227888899999898887764
No 172
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=80.15 E-value=89 Score=33.46 Aligned_cols=216 Identities=14% Similarity=0.117 Sum_probs=109.9
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEE
Q 004094 376 EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGC 455 (774)
Q Consensus 376 ~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~ 455 (774)
+..+.+...++....+.-.-.++-++...+..|+...|++.+.+. .+...|.. ...++.-+--..-.+.
T Consensus 290 ~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr----------~i~~wdlD-gn~~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDR----------TIIMWDLD-GNILGNWEGVRDPKVH 358 (519)
T ss_pred hHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCC----------cEEEecCC-cchhhcccccccceeE
Confidence 344555555554322222222567888999999999888887663 12222221 1111111111112233
Q ss_pred EEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEecccc-CeE-EE-EECCEEEEE
Q 004094 456 SILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFN-GKL-LA-AINQKIQLY 532 (774)
Q Consensus 456 si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~-~~l-v~-~~g~~l~v~ 532 (774)
+ +.+..+++.+++|++.. ++.+|..+.. +. +.......|+++++--+ +++ ++ -..+.+++|
T Consensus 359 d---lait~Dgk~vl~v~~d~-----------~i~l~~~e~~-~d-r~lise~~~its~~iS~d~k~~LvnL~~qei~LW 422 (519)
T KOG0293|consen 359 D---LAITYDGKYVLLVTVDK-----------KIRLYNREAR-VD-RGLISEEQPITSFSISKDGKLALVNLQDQEIHLW 422 (519)
T ss_pred E---EEEcCCCcEEEEEeccc-----------ceeeechhhh-hh-hccccccCceeEEEEcCCCcEEEEEcccCeeEEe
Confidence 3 34566788888888532 4444443311 00 00123467888887653 443 33 456888987
Q ss_pred EeeecCCCchhhhhhcc-cccceEEEEEEEeC----CEEEEEeccccEEEEEEEccCCeE-EEEeccCCcceeEEEEEee
Q 004094 533 KWMLRDDGTRELQSECG-HHGHILALYVQTRG----DFIVVGDLMKSISLLIYKHEEGAI-EERARDYNANWMSAVEILD 606 (774)
Q Consensus 533 ~~~~~~~~~~~l~~~~~-~~~~~~~~~l~~~~----~~I~vgD~~~Sv~~~~~~~~~~~l-~~~a~D~~~~~v~~~~~l~ 606 (774)
++. +.+++++-+ +....+++. +++| .+|+-|---.-| +.|....+++ .++..-.....|.+-..-+
T Consensus 423 Dl~-----e~~lv~kY~Ghkq~~fiIr-SCFgg~~~~fiaSGSED~kv--yIWhr~sgkll~~LsGHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 423 DLE-----ENKLVRKYFGHKQGHFIIR-SCFGGGNDKFIASGSEDSKV--YIWHRISGKLLAVLSGHSKTVNCVSWNPAD 494 (519)
T ss_pred ecc-----hhhHHHHhhcccccceEEE-eccCCCCcceEEecCCCceE--EEEEccCCceeEeecCCcceeeEEecCCCC
Confidence 764 235555421 222223332 2322 255555544444 4566665554 4554444344444444444
Q ss_pred CCeEEEEccCCcEEEEeeCC
Q 004094 607 DDIYLGAENNFNLFTVRKNS 626 (774)
Q Consensus 607 ~~~~l~~D~~gnl~~l~~~~ 626 (774)
..++..+-.+|.+.+....+
T Consensus 495 p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 495 PEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred HHHhhccCCCCeEEEecCCc
Confidence 44677777789998887654
No 173
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=79.29 E-value=21 Score=37.30 Aligned_cols=270 Identities=16% Similarity=0.252 Sum_probs=126.5
Q ss_pred ceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEE
Q 004094 216 YEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFL 295 (774)
Q Consensus 216 ~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~ 295 (774)
.-|+||+-.|- .-..++-|.. ||.+.||++...++..+..-- +.+.+-+++.. ...+-|| .|-.+-.|.
T Consensus 67 dGV~~lakhp~-----~ls~~aSGs~-DG~VkiWnlsqR~~~~~f~AH-~G~V~Gi~v~~---~~~~tvg-dDKtvK~wk 135 (433)
T KOG0268|consen 67 DGVSCLAKHPN-----KLSTVASGSC-DGEVKIWNLSQRECIRTFKAH-EGLVRGICVTQ---TSFFTVG-DDKTVKQWK 135 (433)
T ss_pred cccchhhcCcc-----hhhhhhcccc-CceEEEEehhhhhhhheeecc-cCceeeEEecc---cceEEec-CCcceeeee
Confidence 34667654331 1245666777 999999999875443221000 11344454443 2334444 344455566
Q ss_pred EecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCeEEEecC--CcEEEeeecccCceeeecccCCCCCCcEE-
Q 004094 296 LNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSN--KKLLYSNVNLKEVSHMCPFNSAAFPDSLA- 372 (774)
Q Consensus 296 ~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~~--~~~~~~~~~~~~i~~~~~f~~~~~~~~l~- 372 (774)
++.. .. ...+|..-+ .-++....+.+|++|..-.=|+..+ ..++-.....+.+.++ .|+. ...+++
T Consensus 136 ~~~~-----p~-~tilg~s~~--~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~sv-kfNp--vETsILa 204 (433)
T KOG0268|consen 136 IDGP-----PL-HTILGKSVY--LGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSV-KFNP--VETSILA 204 (433)
T ss_pred ccCC-----cc-eeeeccccc--cccccccccccccccCceeeecccccCCccceeecCCCceeEE-ecCC--Ccchhee
Confidence 5431 11 112333221 1122223467888776544333221 1122122222333332 2321 111333
Q ss_pred EE-eCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCC
Q 004094 373 IA-KEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF 451 (774)
Q Consensus 373 ~~-~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~ 451 (774)
.+ +++.+.+..+- +.-+.+++-++.-+.+|++.|+.-.|+++.-+ +++-.+|-...+.--.. -.
T Consensus 205 s~~sDrsIvLyD~R--~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED----------~nlY~~DmR~l~~p~~v---~~ 269 (433)
T KOG0268|consen 205 SCASDRSIVLYDLR--QASPLKKVILTMRTNTICWNPEAFNFVAANED----------HNLYTYDMRNLSRPLNV---HK 269 (433)
T ss_pred eeccCCceEEEecc--cCCccceeeeeccccceecCccccceeecccc----------ccceehhhhhhcccchh---hc
Confidence 22 45666665543 45678899999999999999954444444321 34555554322211011 11
Q ss_pred ceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-c-CeEEEEEC-CE
Q 004094 452 EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-N-GKLLAAIN-QK 528 (774)
Q Consensus 452 E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~-~~lv~~~g-~~ 528 (774)
.++.++..+-|+..+++|+. | ++ --.|.+|.+..++=+-++.+.-=..|.|+.-- + .+|+.+.. .+
T Consensus 270 dhvsAV~dVdfsptG~Efvs-g-sy---------DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~n 338 (433)
T KOG0268|consen 270 DHVSAVMDVDFSPTGQEFVS-G-SY---------DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGN 338 (433)
T ss_pred ccceeEEEeccCCCcchhcc-c-cc---------cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcc
Confidence 23444555556554455432 2 22 13567777764432222222222345555533 3 34555554 56
Q ss_pred EEEEE
Q 004094 529 IQLYK 533 (774)
Q Consensus 529 l~v~~ 533 (774)
|++|+
T Consensus 339 vRlWk 343 (433)
T KOG0268|consen 339 VRLWK 343 (433)
T ss_pred eeeee
Confidence 77765
No 174
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=79.22 E-value=33 Score=38.73 Aligned_cols=176 Identities=13% Similarity=0.188 Sum_probs=90.9
Q ss_pred EEEEEECCCceEEEEEE-CCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEE-----
Q 004094 431 FVRLLDDQTFEFISTYP-LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAE----- 504 (774)
Q Consensus 431 ~l~l~d~~~~~~i~~~~-~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~----- 504 (774)
.+++.++....+-+.-. -.....+.|+... .+...+++..+. .++|.+|++.-+--++++.
T Consensus 96 TVK~W~~~~~~~~c~stir~H~DYVkcla~~----ak~~~lvaSgGL---------D~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFCMSTIRTHKDYVKCLAYI----AKNNELVASGGL---------DRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred eEEEeecccCcchhHhhhhcccchheeeeec----ccCceeEEecCC---------CccEEEEEccCcchhhhhhccccc
Confidence 67777764321111001 1234566777653 234445544433 2689999997331112221
Q ss_pred -E----eecCceeEecccc-CeEEEEEC--CEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEeccccEE
Q 004094 505 -K----ETKGAVYSLNAFN-GKLLAAIN--QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSIS 576 (774)
Q Consensus 505 -~----~~~g~v~~i~~~~-~~lv~~~g--~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~ 576 (774)
. -.+.+||+++.-+ |.++++-| +.|++|+. +. .+++.+...+...+-++-+.-.|++++-|-.-.-|-
T Consensus 163 ~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDp--rt--~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIr 238 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDP--RT--CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIR 238 (735)
T ss_pred cccCCCCCccceeeeecCCcceEEEecCcccceEEecc--cc--ccceeeeeccccceEEEEEcCCCCeEeecCCCceEE
Confidence 1 2346888888764 55776655 45677653 21 234433333333344444455677887776666666
Q ss_pred EEEEEccCCeEEEEe-ccCCcceeEEEEEeeCCeEEEEccCCcEEEEeeCC
Q 004094 577 LLIYKHEEGAIEERA-RDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNS 626 (774)
Q Consensus 577 ~~~~~~~~~~l~~~a-~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~ 626 (774)
+.....+.-..+..+ +|- .|...+. -+-+.+..+|++||++.-....
T Consensus 239 lWdLgqQrCl~T~~vH~e~--VWaL~~~-~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 239 LWDLGQQRCLATYIVHKEG--VWALQSS-PSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred eeeccccceeeeEEeccCc--eEEEeeC-CCcceEEecCCCCcEEecccCC
Confidence 644433322222222 232 5654443 1113577899999998777643
No 175
>PHA02713 hypothetical protein; Provisional
Probab=79.08 E-value=80 Score=36.40 Aligned_cols=138 Identities=16% Similarity=0.169 Sum_probs=72.4
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEECC-------EEEEEEeeecCC
Q 004094 467 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQ-------KIQLYKWMLRDD 539 (774)
Q Consensus 467 ~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g~-------~l~v~~~~~~~~ 539 (774)
...+++|.... .......++.|+...++...+.....+-.=.+++.++|+|++.-|. .+..|+. ..
T Consensus 304 ~~IYviGG~~~----~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp--~~- 376 (557)
T PHA02713 304 NEIIIAGGYNF----NNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTM--GD- 376 (557)
T ss_pred CEEEEEcCCCC----CCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEEC--CC-
Confidence 46677775311 1112356888888777766555433322233556667777655442 2455553 21
Q ss_pred CchhhhhhcccccceEEEEEEEeCCEEEE-Eeccc---------------------cEEEEEEEccCCeEEEEeccCCcc
Q 004094 540 GTRELQSECGHHGHILALYVQTRGDFIVV-GDLMK---------------------SISLLIYKHEEGAIEERARDYNAN 597 (774)
Q Consensus 540 ~~~~l~~~~~~~~~~~~~~l~~~~~~I~v-gD~~~---------------------Sv~~~~~~~~~~~l~~~a~D~~~~ 597 (774)
. ++...+.+.......+..+.+++|+| |-... .-.+..|+++.++-..++.=+.++
T Consensus 377 ~--~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r 454 (557)
T PHA02713 377 D--KWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT 454 (557)
T ss_pred C--eEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc
Confidence 2 23333333222222234456777776 43211 123667999888888777655566
Q ss_pred eeEEEEEeeCCeEEEE
Q 004094 598 WMSAVEILDDDIYLGA 613 (774)
Q Consensus 598 ~v~~~~~l~~~~~l~~ 613 (774)
.-.++..+++.-++++
T Consensus 455 ~~~~~~~~~~~IYv~G 470 (557)
T PHA02713 455 IRPGVVSHKDDIYVVC 470 (557)
T ss_pred ccCcEEEECCEEEEEe
Confidence 5445555654445544
No 176
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=78.86 E-value=1.5e+02 Score=35.38 Aligned_cols=231 Identities=15% Similarity=0.156 Sum_probs=118.9
Q ss_pred CeEEE--EecCcEEEEecCCCceeeeEeCCCCCcEEEEE-------ECCCEEEEEEcCCeEEEEEEcC--ceEEEE--Ee
Q 004094 145 NQLVQ--VTSGSVRLVSSTSRELRNEWKSPPGYSVNVAT-------ANASQVLLATGGGHLVYLEIGD--GILTEV--KH 211 (774)
Q Consensus 145 ~~~vQ--VT~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~-------~~~~~lvv~~~~~~~~~~~~~~--~~l~~~--~~ 211 (774)
..++| .-++.+.-+|.+.++.+.+|+......|..-+ ..+...++.++.+.+..+...- .++... ..
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 36666 35678888888889999999987655454332 2356778888777775543221 233221 12
Q ss_pred ccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCc-cCceeEEeeeecCeeEEEEEeCCCc
Q 004094 212 AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGE-IIPRSVLLCAFEGISYLLCALGDGH 290 (774)
Q Consensus 212 ~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~-~~p~si~~~~~~~~~~L~vgl~~G~ 290 (774)
..-...-+|++-.. .-+++||.- +|.|++|+--. .-.+..+|+- .+...|-+. .+..++++.+.. +
T Consensus 574 Y~~~~~Fs~~aTt~-------~G~iavgs~-~G~IRLyd~~g--~~AKT~lp~lG~pI~~iDvt--~DGkwilaTc~t-y 640 (794)
T PF08553_consen 574 YSSKNNFSCFATTE-------DGYIAVGSN-KGDIRLYDRLG--KRAKTALPGLGDPIIGIDVT--ADGKWILATCKT-Y 640 (794)
T ss_pred cccCCCceEEEecC-------CceEEEEeC-CCcEEeecccc--hhhhhcCCCCCCCeeEEEec--CCCcEEEEeecc-e
Confidence 23345667886532 567899988 99999997321 1123334421 111222222 234455554443 4
Q ss_pred EEEEEEe--cC--CCcccc-----------ceeee--------c---CCCCeEEEEEEeC----CcceEEEecCCCeEEE
Q 004094 291 LLNFLLN--MK--TGELTD-----------RKKVS--------L---GTQPITLRTFSSK----NTTHVFAASDRPTVIY 340 (774)
Q Consensus 291 l~~y~~~--~~--~~~l~~-----------~~~~~--------l---G~~pv~l~~~~~~----~~~~v~~~~~~p~~l~ 340 (774)
|+.+... .. .|.+-+ .|... + +..|+.|++...+ ....-++++..|+++.
T Consensus 641 LlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~ 720 (794)
T PF08553_consen 641 LLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVT 720 (794)
T ss_pred EEEEEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEE
Confidence 4443321 11 111111 11111 1 3466777665321 2345667777788877
Q ss_pred ec-----CCc---EEEeeecccCceeeecccCCCCCCcEEEEeCCeEEEEEEcCCCCeE
Q 004094 341 SS-----NKK---LLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLH 391 (774)
Q Consensus 341 ~~-----~~~---~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~ 391 (774)
++ +++ .++.... ..|.+ ..|.- +-.+.++++..+.+.+......++..
T Consensus 721 Wnf~kV~~g~~~~Y~ikry~-~~V~~-dnF~f-g~d~~vival~~dV~m~~~~~~kkp~ 776 (794)
T PF08553_consen 721 WNFKKVKRGKKDPYQIKRYD-ENVVA-DNFKF-GSDKNVIVALPNDVNMVKKKSLKKPT 776 (794)
T ss_pred EEHHHHhCCCCCceEEEEcC-CceEE-cccee-CCCCcEEEEccchhhhhhhhhccCCC
Confidence 65 232 2222211 22222 22221 11246777777777766666555433
No 177
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=78.83 E-value=49 Score=38.21 Aligned_cols=171 Identities=16% Similarity=0.147 Sum_probs=100.0
Q ss_pred eeEEEEEECCC--ceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEe
Q 004094 429 MHFVRLLDDQT--FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE 506 (774)
Q Consensus 429 ~~~l~l~d~~~--~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~ 506 (774)
...++.+||.+ |..+....-+.. -.+++.+ +...+++|--.. ....--.+..|+...++...+....
T Consensus 300 ~~~ve~yd~~~~~w~~~a~m~~~r~--~~~~~~~-----~~~lYv~GG~~~----~~~~l~~ve~YD~~~~~W~~~a~M~ 368 (571)
T KOG4441|consen 300 LRSVECYDPKTNEWSSLAPMPSPRC--RVGVAVL-----NGKLYVVGGYDS----GSDRLSSVERYDPRTNQWTPVAPMN 368 (571)
T ss_pred cceeEEecCCcCcEeecCCCCcccc--cccEEEE-----CCEEEEEccccC----CCcccceEEEecCCCCceeccCCcc
Confidence 45788888855 444433222222 2333332 246677775331 1124457778887777777666665
Q ss_pred ecCceeEeccccCeEEEEECC-------EEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEE-Ee------cc
Q 004094 507 TKGAVYSLNAFNGKLLAAINQ-------KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVV-GD------LM 572 (774)
Q Consensus 507 ~~g~v~~i~~~~~~lv~~~g~-------~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~v-gD------~~ 572 (774)
.+-.=.+++.++|.|++.-|. .+..|+ .. ..++...+.+...-......+.+.+|++ |= .+
T Consensus 369 ~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YD--p~---~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l 443 (571)
T KOG4441|consen 369 TKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYD--PV---TNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCL 443 (571)
T ss_pred CccccceeEEECCEEEEEeccccccccccEEEec--CC---CCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcccc
Confidence 555555666666666555443 244444 22 2244445544443445556677776665 32 34
Q ss_pred ccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccCC
Q 004094 573 KSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNF 617 (774)
Q Consensus 573 ~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~g 617 (774)
+| +-.|++..++=..++.=..+|....+..+++..++++..+|
T Consensus 444 ~s--ve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 444 NS--VECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG 486 (571)
T ss_pred ce--EEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccC
Confidence 44 45789998888888877788887778888766666665555
No 178
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=78.36 E-value=1.2e+02 Score=33.77 Aligned_cols=153 Identities=17% Similarity=0.192 Sum_probs=81.8
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEECCEEEEEEeeecCCCchhhhh
Q 004094 467 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQS 546 (774)
Q Consensus 467 ~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g~~l~v~~~~~~~~~~~~l~~ 546 (774)
..+++|.|+. .+|+|.-++.+-.++..- -.+.+.-+.+-+.+.++.-|..+.+|.++ |..-+.+
T Consensus 331 Y~hLvvaTs~-----------qvyiys~knwntpiiidg-re~tr~lieq~ek~fli~dgsSi~lytye----gR~~~np 394 (737)
T KOG1524|consen 331 YGHLVVATSL-----------QVYIYSEKNWNTPIIIDG-REDTRNLIEQGEKYFLILDGSSIWLYTYE----GRLHLNP 394 (737)
T ss_pred eeEEEEEecc-----------EEEEEecCCccCcEEEec-cccchhHhhhhhhheEEecCcEEEEEEec----CceecCC
Confidence 5677777753 566665543322221110 01222223334566788888999999984 3222222
Q ss_pred hcccccce----EEEEEEEeCCEEEEEeccccEEEEEEEc-cCCe-------------EEEEeccCCcceeEEEEEeeCC
Q 004094 547 ECGHHGHI----LALYVQTRGDFIVVGDLMKSISLLIYKH-EEGA-------------IEERARDYNANWMSAVEILDDD 608 (774)
Q Consensus 547 ~~~~~~~~----~~~~l~~~~~~I~vgD~~~Sv~~~~~~~-~~~~-------------l~~~a~D~~~~~v~~~~~l~~~ 608 (774)
. ++++. ..-+++...+.+.+-|--++=.+..|+. ..++ +.++|-|. +....|.
T Consensus 395 ~--~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldq-------kG~tnDr 465 (737)
T KOG1524|consen 395 R--YPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQ-------KGLTNDR 465 (737)
T ss_pred C--CCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhc-------cCCCccc
Confidence 2 22221 1234666677888888888877777776 2211 12222221 2223334
Q ss_pred eEEEEccCCcEEEEeeCCCCCCccccceeeeEEEEEcCcccceEE
Q 004094 609 IYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFR 653 (774)
Q Consensus 609 ~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~ 653 (774)
.+..-|+++.+++-.......+ .--+.+|.+|..+.
T Consensus 466 kVAFiDknrdl~ItsvKrfgke---------e~I~KiGTmVhtLa 501 (737)
T KOG1524|consen 466 KVAFIDKNRDLFITSVKRFGKE---------EEIYKIGTMVHTLA 501 (737)
T ss_pred eEEEEecCCcEEEEeehhcCch---------hhhhhhhhhhhhhh
Confidence 5667899999988776433222 12356788776543
No 179
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=77.33 E-value=1.9e+02 Score=35.66 Aligned_cols=89 Identities=15% Similarity=0.275 Sum_probs=58.7
Q ss_pred eeeeEeCC----CCCcEEEEE--ECCCEEEEEEcCCeEEEEEEcC----ceEEEEEeccCCceeEEEEeCCCCCCCCCcc
Q 004094 165 LRNEWKSP----PGYSVNVAT--ANASQVLLATGGGHLVYLEIGD----GILTEVKHAQLEYEISCLDINPIGENPSYSQ 234 (774)
Q Consensus 165 ~~~~~~~~----~~~~I~~a~--~~~~~lvv~~~~~~~~~~~~~~----~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~ 234 (774)
.+..|..+ .+..|+... .+...+++++.+|.++.+..+. ..++.+. .++..|.|++.+|- ..
T Consensus 62 ~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG--~vd~GI~a~~WSPD------~E 133 (928)
T PF04762_consen 62 VLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG--SVDSGILAASWSPD------EE 133 (928)
T ss_pred EEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE--EEcCcEEEEEECCC------cC
Confidence 45566532 345677766 3466888888899988874432 3444444 55778999999762 56
Q ss_pred eEEEEEecCCEEEEEECCCCCeeEEecCC
Q 004094 235 IAAVGMWTDISVRIFSLPDLNLITKEHLG 263 (774)
Q Consensus 235 ~~~vg~~~~~~i~i~~l~~~~~~~~~~l~ 263 (774)
.+++.+- ++.+.+++ .+++++...++.
T Consensus 134 lla~vT~-~~~l~~mt-~~fd~i~E~~l~ 160 (928)
T PF04762_consen 134 LLALVTG-EGNLLLMT-RDFDPISEVPLD 160 (928)
T ss_pred EEEEEeC-CCEEEEEe-ccceEEEEeecC
Confidence 7777776 77887775 567777665554
No 180
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=77.15 E-value=74 Score=30.85 Aligned_cols=129 Identities=15% Similarity=0.172 Sum_probs=72.5
Q ss_pred EEEEEEcCCCCeEEEEEeCC--CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEE
Q 004094 379 LTIGTIDDIQKLHIRSIPLG--EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCS 456 (774)
Q Consensus 379 l~i~~l~~~~~~~~~~i~l~--~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~s 456 (774)
..+..++.. ..++..+.+. +.++.++++|..+.|+|+.... ...+.|+|.+ .+.+.. |+. ....+
T Consensus 39 ~~l~~~~~~-~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~--------~~~v~lyd~~-~~~i~~--~~~-~~~n~ 105 (194)
T PF08662_consen 39 FELFYLNEK-NIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSM--------PAKVTLYDVK-GKKIFS--FGT-QPRNT 105 (194)
T ss_pred EEEEEEecC-CCccceeeccCCCceEEEEECcCCCEEEEEEccC--------CcccEEEcCc-ccEeEe--ecC-CCceE
Confidence 344444332 2356666664 3588899999999999886532 2378999986 444443 433 23343
Q ss_pred EEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCe-EEEEE-------CC
Q 004094 457 ILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGK-LLAAI-------NQ 527 (774)
Q Consensus 457 i~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~-lv~~~-------g~ 527 (774)
+. +.. ..+++++|..- ...|.+.+|++.+ .+.+...+... ++.++=- +|+ ++.+. .+
T Consensus 106 i~---wsP-~G~~l~~~g~~-------n~~G~l~~wd~~~--~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dn 171 (194)
T PF08662_consen 106 IS---WSP-DGRFLVLAGFG-------NLNGDLEFWDVRK--KKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDN 171 (194)
T ss_pred EE---ECC-CCCEEEEEEcc-------CCCcEEEEEECCC--CEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccc
Confidence 32 332 35677776532 1459999999864 44455555444 3333311 455 44332 34
Q ss_pred EEEEEEe
Q 004094 528 KIQLYKW 534 (774)
Q Consensus 528 ~l~v~~~ 534 (774)
.+.+|.+
T Consensus 172 g~~Iw~~ 178 (194)
T PF08662_consen 172 GFKIWSF 178 (194)
T ss_pred cEEEEEe
Confidence 5566665
No 181
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=77.12 E-value=1e+02 Score=32.56 Aligned_cols=231 Identities=17% Similarity=0.107 Sum_probs=114.8
Q ss_pred CEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCc-EEEEEEecCCC-c---cccceeeecCCCC--e
Q 004094 244 ISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGH-LLNFLLNMKTG-E---LTDRKKVSLGTQP--I 316 (774)
Q Consensus 244 ~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~-l~~y~~~~~~~-~---l~~~~~~~lG~~p--v 316 (774)
-.|.+|+..++++.....+|. .||..++. ....+.-+.||. +++|++.+.+. . +..+|...-=..| .
T Consensus 67 Dvv~~~D~~TL~~~~EI~iP~--k~R~~~~~----~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~ 140 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEIPP--KPRAQVVP----YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCW 140 (342)
T ss_dssp EEEEEEETTTTEEEEEEEETT--S-B--BS------GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEE
T ss_pred eEEEEEecCcCcccceEecCC--cchheecc----cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEE
Confidence 368889988888876555652 23443222 122344444554 56677766432 1 1122221110122 1
Q ss_pred EEEEEEeCCcceEEEecCCCeEEEe--cCCcEEE--eeecccCceeeecccCCC---CCCcEEEEe-CCeEEEEEEcCCC
Q 004094 317 TLRTFSSKNTTHVFAASDRPTVIYS--SNKKLLY--SNVNLKEVSHMCPFNSAA---FPDSLAIAK-EGELTIGTIDDIQ 388 (774)
Q Consensus 317 ~l~~~~~~~~~~v~~~~~~p~~l~~--~~~~~~~--~~~~~~~i~~~~~f~~~~---~~~~l~~~~-~~~l~i~~l~~~~ 388 (774)
.+.|. .+.....+|+|-..+-+. .+|+... +++... -. =..|.+.. ..+.++|.+ ++.+.-..+....
T Consensus 141 ~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~-~~-dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 141 LIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDP-DD-DPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp EEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESST-TT-S-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred EEEec--CCCceEEEecCCceEEEEECCCCCEeEeeccccCC-CC-cccccccceECCCCeEEEEecCCEEEEEeccCCc
Confidence 22332 223344556666655432 2344321 111100 00 00122222 123477776 7888887887665
Q ss_pred CeEEEEEeCCCc-----------ccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEE
Q 004094 389 KLHIRSIPLGEH-----------PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSI 457 (774)
Q Consensus 389 ~~~~~~i~l~~t-----------p~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si 457 (774)
--..+++++-.. -.-++||+.++.+.|+......-........|-.+|.++.+.+.+++++. .+.||
T Consensus 217 ~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si 294 (342)
T PF06433_consen 217 AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSI 294 (342)
T ss_dssp EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EESEE
T ss_pred ccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC--ccceE
Confidence 334455655311 13489999888777776543211111234679999999999999999853 34454
Q ss_pred EEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe
Q 004094 458 LSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK 498 (774)
Q Consensus 458 ~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~k 498 (774)
. +..+.++.+..-+. ..|-|++|+...+|
T Consensus 295 ~---Vsqd~~P~L~~~~~---------~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 295 A---VSQDDKPLLYALSA---------GDGTLDVYDAATGK 323 (342)
T ss_dssp E---EESSSS-EEEEEET---------TTTEEEEEETTT--
T ss_pred E---EccCCCcEEEEEcC---------CCCeEEEEeCcCCc
Confidence 4 45566776653331 23789999877654
No 182
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=74.39 E-value=2.2e+02 Score=35.05 Aligned_cols=75 Identities=17% Similarity=0.146 Sum_probs=44.3
Q ss_pred CceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeec--CeeEEEEEeCCCcEE
Q 004094 215 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFE--GISYLLCALGDGHLL 292 (774)
Q Consensus 215 ~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~--~~~~L~vgl~~G~l~ 292 (774)
+..|..|..++ .++.++|-+ ...|++|...+...-.++.+...... .+..+.+. ....|.+++.+|.+.
T Consensus 304 ~~~v~~l~Wn~------ds~iLAv~~--~~~vqLWt~~NYHWYLKqei~~~~~~-~~~~~~Wdpe~p~~L~v~t~~g~~~ 374 (928)
T PF04762_consen 304 EEKVIELAWNS------DSEILAVWL--EDRVQLWTRSNYHWYLKQEIRFSSSE-SVNFVKWDPEKPLRLHVLTSNGQYE 374 (928)
T ss_pred CceeeEEEECC------CCCEEEEEe--cCCceEEEeeCCEEEEEEEEEccCCC-CCCceEECCCCCCEEEEEecCCcEE
Confidence 34566777653 267788744 44599999887554333333211010 11112332 345699999999999
Q ss_pred EEEEec
Q 004094 293 NFLLNM 298 (774)
Q Consensus 293 ~y~~~~ 298 (774)
.|++..
T Consensus 375 ~~~~~~ 380 (928)
T PF04762_consen 375 IYDFAW 380 (928)
T ss_pred EEEEEE
Confidence 888754
No 183
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=74.19 E-value=1.2e+02 Score=31.94 Aligned_cols=104 Identities=15% Similarity=0.245 Sum_probs=62.8
Q ss_pred eEEEEecCcEEEEecCCCceeeeEeCCCC------------------------CcEEEEEEC--CCEEEEEE-cCCeEEE
Q 004094 146 QLVQVTSGSVRLVSSTSRELRNEWKSPPG------------------------YSVNVATAN--ASQVLLAT-GGGHLVY 198 (774)
Q Consensus 146 ~~vQVT~~~i~l~~~~~~~~~~~~~~~~~------------------------~~I~~a~~~--~~~lvv~~-~~~~~~~ 198 (774)
++|||+.++..+-.....+.+..|....+ .+|..|.-+ +.+++.+. .++.+..
T Consensus 239 r~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~ 318 (406)
T KOG0295|consen 239 RMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI 318 (406)
T ss_pred EEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE
Confidence 57788877777765544444555533221 123334322 23444443 4667777
Q ss_pred EEEcCceE-EEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeE
Q 004094 199 LEIGDGIL-TEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLIT 258 (774)
Q Consensus 199 ~~~~~~~l-~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~ 258 (774)
.++..+.. -++ ..++..|..++|.| .+.+++- +-.|+++++|++...++..
T Consensus 319 wdv~tg~cL~tL--~ghdnwVr~~af~p------~Gkyi~S-caDDktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 319 WDVSTGMCLFTL--VGHDNWVRGVAFSP------GGKYILS-CADDKTLRVWDLKNLQCMK 370 (406)
T ss_pred EeccCCeEEEEE--ecccceeeeeEEcC------CCeEEEE-EecCCcEEEEEeccceeee
Confidence 77766542 222 35678899999965 2567654 4449999999999877644
No 184
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=72.74 E-value=1.1e+02 Score=33.87 Aligned_cols=198 Identities=18% Similarity=0.314 Sum_probs=98.2
Q ss_pred CeEEEEEecCCCCcEEEEecCCceeEEEeeeCCCc-ceeeeeecCCCCCCceEEEEEecCceEEEEecCCCCeeeeeecC
Q 004094 51 GQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEG 129 (774)
Q Consensus 51 ~~l~~~sG~g~~g~L~~lr~gi~~~~~~~~~l~~~-~~iw~~~~~~~~~~~~~li~S~~~~T~vl~~~~~~~~~e~~~~~ 129 (774)
+.++.|+. +|.+.+|.+.-+++...+..-..+ .+-|. ++.|-++..++|+.+..-.-+|
T Consensus 76 d~~~i~s~---DGkf~il~k~~rVE~sv~AH~~A~~~gRW~-----------------~dGtgLlt~GEDG~iKiWSrsG 135 (737)
T KOG1524|consen 76 DTLLICSN---DGRFVILNKSARVERSISAHAAAISSGRWS-----------------PDGAGLLTAGEDGVIKIWSRSG 135 (737)
T ss_pred ceEEEEcC---CceEEEecccchhhhhhhhhhhhhhhcccC-----------------CCCceeeeecCCceEEEEeccc
Confidence 45555553 566777776655554333211111 23343 2334455555543333222222
Q ss_pred c-----cccCcceeeeecCC--CeEEEEecCcEEEEecCCCceeeeEeCCCCCcEEEEEECCCEEEEEEcCCeEEEEEE-
Q 004094 130 F-----CSQTQTLFCHDAIY--NQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEI- 201 (774)
Q Consensus 130 f-----~~~~~Tl~~~~~~~--~~~vQVT~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~~~lvv~~~~~~~~~~~~- 201 (774)
. .-++..++|...+. +.++=.-.+.+.+=.......+..|+.-+| -|.+++.+...=+|+. +|+=.-|.+
T Consensus 136 MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~s-gGED~kfKvW 213 (737)
T KOG1524|consen 136 MLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIAS-GGEDFRFKIW 213 (737)
T ss_pred hHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCc-EEEEeecCccccceee-cCCceeEEee
Confidence 2 23455677766532 234433344444433333346778998765 3666666644333333 444333343
Q ss_pred cC-ceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeee-cCe
Q 004094 202 GD-GILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAF-EGI 279 (774)
Q Consensus 202 ~~-~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~-~~~ 279 (774)
|. |. ....+...++.|+++++.| ....++|.+ ++++ +..... .|+.-+.. .+.
T Consensus 214 D~~G~-~Lf~S~~~ey~ITSva~np-------d~~~~v~S~--nt~R---~~~p~~------------GSifnlsWS~DG 268 (737)
T KOG1524|consen 214 DAQGA-NLFTSAAEEYAITSVAFNP-------EKDYLLWSY--NTAR---FSSPRV------------GSIFNLSWSADG 268 (737)
T ss_pred cccCc-ccccCChhccceeeeeecc-------ccceeeeee--eeee---ecCCCc------------cceEEEEEcCCC
Confidence 33 22 1223456678899999975 244555444 2333 221111 12221122 256
Q ss_pred eEEEEEeCCCcEEEEE
Q 004094 280 SYLLCALGDGHLLNFL 295 (774)
Q Consensus 280 ~~L~vgl~~G~l~~y~ 295 (774)
..+-+|+++|+|+.-.
T Consensus 269 TQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 269 TQATCGTSTGQLIVAY 284 (737)
T ss_pred ceeeccccCceEEEee
Confidence 7899999999997743
No 185
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.17 E-value=19 Score=38.13 Aligned_cols=93 Identities=18% Similarity=0.182 Sum_probs=57.7
Q ss_pred cccEEEEecCCC-EEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeC
Q 004094 400 HPRRICHQEQSR-TFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 478 (774)
Q Consensus 400 tp~~i~y~~~~~-~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~ 478 (774)
..|-++++|..+ ++.++...+ .|+++|-.+-.++.+|... + .+-|+ .| ..+..++|.-|-
T Consensus 195 ~IrdlafSp~~~GLl~~asl~n----------kiki~dlet~~~vssy~a~-~-~~wSC-~w--Dlde~h~IYaGl---- 255 (463)
T KOG1645|consen 195 FIRDLAFSPFNEGLLGLASLGN----------KIKIMDLETSCVVSSYIAY-N-QIWSC-CW--DLDERHVIYAGL---- 255 (463)
T ss_pred hhhhhccCccccceeeeeccCc----------eEEEEecccceeeeheecc-C-Cceee-ee--ccCCcceeEEec----
Confidence 456688888877 444454443 7999999888788777664 2 22222 23 334578888776
Q ss_pred CCCCCCcceEEEEEEEeCC--eEEEEEEEeecCceeEeccc
Q 004094 479 PEENEPTKGRILVFIVEDG--KLQLIAEKETKGAVYSLNAF 517 (774)
Q Consensus 479 ~~e~~~~~Grl~v~~i~~~--kl~~~~~~~~~g~v~~i~~~ 517 (774)
.+|-+|+|++... -+-.+.......||..|+.+
T Consensus 256 ------~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~ 290 (463)
T KOG1645|consen 256 ------QNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPV 290 (463)
T ss_pred ------cCceEEEEEccCCCchHhhhhhhhccCcceeeccc
Confidence 4699999999832 12222222335566666655
No 186
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=72.05 E-value=1.2e+02 Score=31.04 Aligned_cols=155 Identities=19% Similarity=0.252 Sum_probs=79.6
Q ss_pred ceEEEEEeeeeCCCCCCC--cceEEEEEEEeCCeEE---EEEEEeecCce---eEeccccCe---EEEEECCEEEEEEee
Q 004094 467 NVYYCVGTAYVLPEENEP--TKGRILVFIVEDGKLQ---LIAEKETKGAV---YSLNAFNGK---LLAAINQKIQLYKWM 535 (774)
Q Consensus 467 ~~~i~VGT~~~~~~e~~~--~~Grl~v~~i~~~kl~---~~~~~~~~g~v---~~i~~~~~~---lv~~~g~~l~v~~~~ 535 (774)
.+.+++||-.-..+.... ..|++++|++.+.++. .+-.+++.+.- -++-..+|. +.+-.-..|.+|+.+
T Consensus 24 ~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~ 103 (339)
T KOG0280|consen 24 RNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRND 103 (339)
T ss_pred cceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeec
Confidence 459999997655442222 5799999999865533 22222222211 122223333 333344567777754
Q ss_pred ecCCCchhhhhhcccccce---EEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEE----eccCCcceeEEEEEeeCC
Q 004094 536 LRDDGTRELQSECGHHGHI---LALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEER----ARDYNANWMSAVEILDDD 608 (774)
Q Consensus 536 ~~~~~~~~l~~~~~~~~~~---~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~----a~D~~~~~v~~~~~l~~~ 608 (774)
+.. ..--|.+....+... ..+.++..+..|+++|..-++..+... ...|.-+ +.|+ +.|+.+..-...+
T Consensus 104 ~~~-ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t--~~~le~vq~wk~He~-E~Wta~f~~~~pn 179 (339)
T KOG0280|consen 104 EDE-SSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYET--EMVLEKVQTWKVHEF-EAWTAKFSDKEPN 179 (339)
T ss_pred cce-eeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecc--eeeeeecccccccce-eeeeeecccCCCc
Confidence 321 111222222112222 223445567889999999999854332 2222221 2232 4566544433334
Q ss_pred eEEEEccCCcEEEEeeC
Q 004094 609 IYLGAENNFNLFTVRKN 625 (774)
Q Consensus 609 ~~l~~D~~gnl~~l~~~ 625 (774)
.+..+-.+|.+..+...
T Consensus 180 lvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 180 LVYTGGDDGSLSCWDIR 196 (339)
T ss_pred eEEecCCCceEEEEEec
Confidence 44455567888887765
No 187
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=71.27 E-value=1.5e+02 Score=32.97 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=15.7
Q ss_pred eEEEEEeC-CCcccEEEEecCCCEEEEEEec
Q 004094 390 LHIRSIPL-GEHPRRICHQEQSRTFAICSLK 419 (774)
Q Consensus 390 ~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~ 419 (774)
++.|.+.- .-.|+.+.|+|..+.++| |.+
T Consensus 23 l~~k~lg~~~~~p~~ls~npngr~v~V-~g~ 52 (443)
T PF04053_consen 23 LSVKELGSCEIYPQSLSHNPNGRFVLV-CGD 52 (443)
T ss_dssp ---EEEEE-SS--SEEEE-TTSSEEEE-EET
T ss_pred EEeccCCCCCcCCeeEEECCCCCEEEE-EcC
Confidence 45555533 335999999998887777 543
No 188
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=71.20 E-value=57 Score=29.33 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=48.2
Q ss_pred CCceEEEEEEEEEc-CCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEecc--ccC--eEEEE
Q 004094 450 TFEYGCSILSCSFS-DDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNA--FNG--KLLAA 524 (774)
Q Consensus 450 ~~E~~~si~~~~~~-~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~--~~~--~lv~~ 524 (774)
-++.++|++.-.|+ .+.+..|+|||.. .|+.|++.+++ -++.++++..|.+|.- +.+ .=++-
T Consensus 46 in~~italaaG~l~~~~~~D~LliGt~t-----------~llaYDV~~N~--d~Fyke~~DGvn~i~~g~~~~~~~~l~i 112 (136)
T PF14781_consen 46 INQEITALAAGRLKPDDGRDCLLIGTQT-----------SLLAYDVENNS--DLFYKEVPDGVNAIVIGKLGDIPSPLVI 112 (136)
T ss_pred CCCceEEEEEEecCCCCCcCEEEEeccc-----------eEEEEEcccCc--hhhhhhCccceeEEEEEecCCCCCcEEE
Confidence 46778899888887 3568999999964 78999997542 2445566777776642 222 23444
Q ss_pred ECCEEEEEEee
Q 004094 525 INQKIQLYKWM 535 (774)
Q Consensus 525 ~g~~l~v~~~~ 535 (774)
+|....+..|+
T Consensus 113 vGGncsi~Gfd 123 (136)
T PF14781_consen 113 VGGNCSIQGFD 123 (136)
T ss_pred ECceEEEEEeC
Confidence 55555566654
No 189
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.09 E-value=1.2e+02 Score=30.47 Aligned_cols=77 Identities=21% Similarity=0.292 Sum_probs=47.6
Q ss_pred cCceEEEeecCCCCCCCcEEEeeeccCcCcccceEEecCCCCCCCeEEEEEecCCCCcEEEEecCCceeEEEeeeCCCcc
Q 004094 7 LPKQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIK 86 (774)
Q Consensus 7 gds~l~~~~~~~~~~~s~~~~~~~~~n~~Pi~D~~v~~~~~~~~~~l~~~sG~g~~g~L~~lr~gi~~~~~~~~~l~~~~ 86 (774)
|.+.|+-++..+ +++ +.++.++.----+.|.+=-+. ....+++|+| +|+|++.--+.+...+..+. ...+
T Consensus 36 G~G~L~ile~~~-~~g--i~e~~s~d~~D~LfdV~Wse~---~e~~~~~a~G---DGSLrl~d~~~~s~Pi~~~k-EH~~ 105 (311)
T KOG0277|consen 36 GNGRLFILEVTD-PKG--IQECQSYDTEDGLFDVAWSEN---HENQVIAASG---DGSLRLFDLTMPSKPIHKFK-EHKR 105 (311)
T ss_pred cCceEEEEecCC-CCC--eEEEEeeecccceeEeeecCC---CcceEEEEec---CceEEEeccCCCCcchhHHH-hhhh
Confidence 667777776532 122 677888776666777776553 3568999999 57888887665555444321 1234
Q ss_pred eeeeeec
Q 004094 87 GMWSLRS 93 (774)
Q Consensus 87 ~iw~~~~ 93 (774)
.++++.-
T Consensus 106 EV~Svdw 112 (311)
T KOG0277|consen 106 EVYSVDW 112 (311)
T ss_pred heEEecc
Confidence 5555543
No 190
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=70.21 E-value=1.7e+02 Score=34.10 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=83.4
Q ss_pred CcceEEEEEecCCEEEEEECCCC---Ce--eEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccc
Q 004094 232 YSQIAAVGMWTDISVRIFSLPDL---NL--ITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDR 306 (774)
Q Consensus 232 ~~~~~~vg~~~~~~i~i~~l~~~---~~--~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~ 306 (774)
..++++.+.. +|.|.+|+|... .. ++.+.- -..+.+-+...+ ..+|+-|..||.+-.|.+.......+++
T Consensus 99 ~~NlIAT~s~-nG~i~vWdlnk~~rnk~l~~f~EH~---Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~~S~~t~~ 173 (839)
T KOG0269|consen 99 YSNLIATCST-NGVISVWDLNKSIRNKLLTVFNEHE---RSANKLDFHSTE-PNILISGSQDGTVKCWDLRSKKSKSTFR 173 (839)
T ss_pred hhhhheeecC-CCcEEEEecCccccchhhhHhhhhc---cceeeeeeccCC-ccEEEecCCCceEEEEeeeccccccccc
Confidence 3566665544 999999998651 11 111111 112233333322 3567789999999999987543221111
Q ss_pred eeeecCCCCeEEEEEEeCCcceEEEec-CCCeEEEec--CCc---EEEeeecccCceeeecccCCCCCCcEEEEe---CC
Q 004094 307 KKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYSS--NKK---LLYSNVNLKEVSHMCPFNSAAFPDSLAIAK---EG 377 (774)
Q Consensus 307 ~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~l~~~--~~~---~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~---~~ 377 (774)
- -.-..+=|++.| ++...|+.+ +.-++..++ +++ +++.. +.+++.+ +.++ |+.-.+++ ++
T Consensus 174 ~-nSESiRDV~fsp----~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A-H~GpV~c-~nwh----Pnr~~lATGGRDK 242 (839)
T KOG0269|consen 174 S-NSESIRDVKFSP----GYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA-HNGPVLC-LNWH----PNREWLATGGRDK 242 (839)
T ss_pred c-cchhhhceeecc----CCCceEEEecCCceEEEeeccCchhHHHHhhc-ccCceEE-Eeec----CCCceeeecCCCc
Confidence 0 000011133332 223444443 333333332 111 11111 1122322 2232 45444554 56
Q ss_pred eEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCC
Q 004094 378 ELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSR 411 (774)
Q Consensus 378 ~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~ 411 (774)
.++|..+.....-..-.|.......|+.+-|+..
T Consensus 243 ~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~ 276 (839)
T KOG0269|consen 243 MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS 276 (839)
T ss_pred cEEEEeccCCCccceeEEeecceeeeeeeccCcc
Confidence 7888888766666677777777888888888765
No 191
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=69.85 E-value=1e+02 Score=32.87 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=90.8
Q ss_pred EEEEEEE-EcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeC-C-eEEEEEEEeecCceeEeccc--cCeEEEEEC-CE
Q 004094 455 CSILSCS-FSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVED-G-KLQLIAEKETKGAVYSLNAF--NGKLLAAIN-QK 528 (774)
Q Consensus 455 ~si~~~~-~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~-~-kl~~~~~~~~~g~v~~i~~~--~~~lv~~~g-~~ 528 (774)
.|...+. +..++..+++|++.- -+.++|+... . ..+++....++-..+++..+ .-+.+++.+ +.
T Consensus 61 ~~~a~~~~~~s~~~~llAv~~~~----------K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 61 LSLAPALVLTSDSGRLVAVATSS----------KQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred hhccccccccCCCceEEEEEeCC----------CceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCC
Confidence 4444332 334568899999852 2445555552 2 37788777777777777765 334444433 34
Q ss_pred EEEEE-eeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEeccccEEEEEEEccC--CeEEEEeccCCcceeEEEEEe
Q 004094 529 IQLYK-WMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEE--GAIEERARDYNANWMSAVEIL 605 (774)
Q Consensus 529 l~v~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~--~~l~~~a~D~~~~~v~~~~~l 605 (774)
++-++ |.. +.+ ...+...+-...+-+.++-.+.+|+.+|--.=|.+.+|.... .++.+=.++ .|+.....
T Consensus 131 ~~~~di~s~-~~~--~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e----FVS~isl~ 203 (390)
T KOG3914|consen 131 VYSFDILSA-DSG--RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE----FVSTISLT 203 (390)
T ss_pred ceeeeeecc-ccc--CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh----heeeeeec
Confidence 44333 221 112 222222223333444455567799999999999998885421 223222333 45556666
Q ss_pred eCCeEEEEccCCcEEEEeeCC
Q 004094 606 DDDIYLGAENNFNLFTVRKNS 626 (774)
Q Consensus 606 ~~~~~l~~D~~gnl~~l~~~~ 626 (774)
++..++.+--|++++..++..
T Consensus 204 ~~~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 204 DNYLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred cCceeeecCCCCcEEEEeccc
Confidence 666777777899999999864
No 192
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=69.85 E-value=91 Score=33.65 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=59.9
Q ss_pred CCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEE
Q 004094 193 GGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVL 272 (774)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~ 272 (774)
++.++.+.++.++-...- .....+|.|+++.+. ...+++-|++ ++++.++...+...... ....+.-.+.++
T Consensus 265 D~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~-----~p~~LLsGs~-D~~V~l~D~R~~~~s~~-~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 265 DKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPY-----EPSVLLSGSY-DGTVALKDCRDPSNSGK-EWKFDGEVEKVA 336 (463)
T ss_pred CceEEEEEcCCCCcceeh-hhcCCceeEEEecCC-----CceEEEeccc-cceEEeeeccCccccCc-eEEeccceEEEE
Confidence 467778788765543321 246789999998653 3678888999 99999998764211100 000011223332
Q ss_pred eeeecCeeEEEEEeCCCcEEEEEEec
Q 004094 273 LCAFEGISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 273 ~~~~~~~~~L~vgl~~G~l~~y~~~~ 298 (774)
... ......+||+.||.|..|.+..
T Consensus 337 w~~-~se~~f~~~tddG~v~~~D~R~ 361 (463)
T KOG0270|consen 337 WDP-HSENSFFVSTDDGTVYYFDIRN 361 (463)
T ss_pred ecC-CCceeEEEecCCceEEeeecCC
Confidence 222 2456789999999988876643
No 193
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=69.46 E-value=11 Score=25.14 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=24.5
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEE
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFS 250 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~ 250 (774)
.....|.|+++.+. ..+++.|.. |+.|++|+
T Consensus 9 ~h~~~i~~i~~~~~------~~~~~s~~~-D~~i~vwd 39 (39)
T PF00400_consen 9 GHSSSINSIAWSPD------GNFLASGSS-DGTIRVWD 39 (39)
T ss_dssp SSSSSEEEEEEETT------SSEEEEEET-TSEEEEEE
T ss_pred CCCCcEEEEEEecc------cccceeeCC-CCEEEEEC
Confidence 45678999999752 577888877 99999985
No 194
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=69.31 E-value=81 Score=32.85 Aligned_cols=116 Identities=19% Similarity=0.177 Sum_probs=78.3
Q ss_pred EeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEe
Q 004094 395 IPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGT 474 (774)
Q Consensus 395 i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT 474 (774)
|||..-.+-++.+|.....++...+. ...+.++|+.+.+.+..+.-+++.+.+.--. |..+++-+++ |
T Consensus 1 ~~lP~RgH~~a~~p~~~~avafaRRP--------G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~--fs~dG~~Lyt--T 68 (305)
T PF07433_consen 1 IPLPARGHGVAAHPTRPEAVAFARRP--------GTFALVFDCRTGQLLQRLWAPPGRHFYGHGV--FSPDGRLLYT--T 68 (305)
T ss_pred CCCCccccceeeCCCCCeEEEEEeCC--------CcEEEEEEcCCCceeeEEcCCCCCEEecCEE--EcCCCCEEEE--e
Confidence 35666677889999777666666553 2367888999998888877777777554332 4444443333 3
Q ss_pred eeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecC-ceeEeccc-cC-eEEEEECC
Q 004094 475 AYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKG-AVYSLNAF-NG-KLLAAINQ 527 (774)
Q Consensus 475 ~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g-~v~~i~~~-~~-~lv~~~g~ 527 (774)
. ++.+..+|+|=||+.. ..++.+.+...-| .+..+.-. +| .|++|.|.
T Consensus 69 E----nd~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG 119 (305)
T PF07433_consen 69 E----NDYETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG 119 (305)
T ss_pred c----cccCCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC
Confidence 2 3456789999999997 5788888776654 45555444 44 58888876
No 195
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=68.41 E-value=1.5e+02 Score=30.47 Aligned_cols=270 Identities=15% Similarity=0.139 Sum_probs=139.8
Q ss_pred CceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEe-eee-cCeeEEEEEeCCCcEE
Q 004094 215 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLL-CAF-EGISYLLCALGDGHLL 292 (774)
Q Consensus 215 ~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~-~~~-~~~~~L~vgl~~G~l~ 292 (774)
-..|.|++..+ .+..++- ...||.+-||+.-+-..++..+++ .+=++ ..+ .+..++-+|--|....
T Consensus 55 ~~Ki~~~~ws~------Dsr~ivS-aSqDGklIvWDs~TtnK~haipl~-----s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 55 LNKIYAMDWST------DSRRIVS-ASQDGKLIVWDSFTTNKVHAIPLP-----SSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred ccceeeeEecC------CcCeEEe-eccCCeEEEEEcccccceeEEecC-----ceeEEEEEECCCCCeEEecCcCceeE
Confidence 35688998864 1455544 445999999986443333322332 22111 122 2456788888888999
Q ss_pred EEEEecC--CCccccceeeecCCCCeEEEEEEeCCcceEEEe-cCCCeEEEecCCcEEEeeec--ccCceeeecccCCCC
Q 004094 293 NFLLNMK--TGELTDRKKVSLGTQPITLRTFSSKNTTHVFAA-SDRPTVIYSSNKKLLYSNVN--LKEVSHMCPFNSAAF 367 (774)
Q Consensus 293 ~y~~~~~--~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~-~~~p~~l~~~~~~~~~~~~~--~~~i~~~~~f~~~~~ 367 (774)
+|.+... .+.. +.++.+....--|..++.-+.+.++.. ||....++.-....+..... ..++.++.--. ..
T Consensus 123 iy~ls~~d~~g~~--~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p--~~ 198 (343)
T KOG0286|consen 123 IYPLSTRDAEGNV--RVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSP--SD 198 (343)
T ss_pred EEecccccccccc--eeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCC--CC
Confidence 9998643 2222 222223222222333332233344443 44444444323222222211 23444433211 12
Q ss_pred CCcEEEE-eCCeEEEEEEcCCCCeEEEEEeCCC-cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEE
Q 004094 368 PDSLAIA-KEGELTIGTIDDIQKLHIRSIPLGE-HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 445 (774)
Q Consensus 368 ~~~l~~~-~~~~l~i~~l~~~~~~~~~~i~l~~-tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~ 445 (774)
++.|+-- .+...++..+-. ....+.++-.+ ....+.|+|....|+-.+.+ ...+++|-...+.+..
T Consensus 199 ~ntFvSg~cD~~aklWD~R~--~~c~qtF~ghesDINsv~ffP~G~afatGSDD----------~tcRlyDlRaD~~~a~ 266 (343)
T KOG0286|consen 199 GNTFVSGGCDKSAKLWDVRS--GQCVQTFEGHESDINSVRFFPSGDAFATGSDD----------ATCRLYDLRADQELAV 266 (343)
T ss_pred CCeEEecccccceeeeeccC--cceeEeecccccccceEEEccCCCeeeecCCC----------ceeEEEeecCCcEEee
Confidence 3334322 233333333322 35677777654 48889999998877766543 3788999887777776
Q ss_pred EECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe-EEEEEEEeecCceeEeccccCeEEEE
Q 004094 446 YPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK-LQLIAEKETKGAVYSLNAFNGKLLAA 524 (774)
Q Consensus 446 ~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~k-l~~~~~~~~~g~v~~i~~~~~~lv~~ 524 (774)
|+- .-.+.-+-++-|.. ...++..|- ......+|+.-+++ .-.+. -+++.|+++..-.+...+|
T Consensus 267 ys~--~~~~~gitSv~FS~-SGRlLfagy----------~d~~c~vWDtlk~e~vg~L~--GHeNRvScl~~s~DG~av~ 331 (343)
T KOG0286|consen 267 YSH--DSIICGITSVAFSK-SGRLLFAGY----------DDFTCNVWDTLKGERVGVLA--GHENRVSCLGVSPDGMAVA 331 (343)
T ss_pred ecc--CcccCCceeEEEcc-cccEEEeee----------cCCceeEeeccccceEEEee--ccCCeeEEEEECCCCcEEE
Confidence 662 22223344444543 234555552 11356666654432 33333 4577888888776666677
Q ss_pred ECC
Q 004094 525 INQ 527 (774)
Q Consensus 525 ~g~ 527 (774)
.|.
T Consensus 332 TgS 334 (343)
T KOG0286|consen 332 TGS 334 (343)
T ss_pred ecc
Confidence 764
No 196
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=68.18 E-value=81 Score=27.41 Aligned_cols=89 Identities=8% Similarity=0.107 Sum_probs=53.4
Q ss_pred EecCcEEEEecCCCceeeeEeCCCCCcEEEEEECCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCC
Q 004094 150 VTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGEN 229 (774)
Q Consensus 150 VT~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~ 229 (774)
=....||++..+. .+.+....+ ..+..+...+..+.-++.+|.+-.++ +...+++..-.++++|++...+..+
T Consensus 22 s~D~~IRvf~~~e--~~~Ei~e~~-~v~~L~~~~~~~F~Y~l~NGTVGvY~----~~~RlWRiKSK~~~~~~~~~D~~gd 94 (111)
T PF14783_consen 22 SDDFEIRVFKGDE--IVAEITETD-KVTSLCSLGGGRFAYALANGTVGVYD----RSQRLWRIKSKNQVTSMAFYDINGD 94 (111)
T ss_pred cCCcEEEEEeCCc--EEEEEeccc-ceEEEEEcCCCEEEEEecCCEEEEEe----CcceeeeeccCCCeEEEEEEcCCCC
Confidence 3456788887764 666665432 23344456677788888888776554 3345555555667888865433321
Q ss_pred CCCcceEEEEEecCCEEEE
Q 004094 230 PSYSQIAAVGMWTDISVRI 248 (774)
Q Consensus 230 ~~~~~~~~vg~~~~~~i~i 248 (774)
...-++ ..|.+|.+.+
T Consensus 95 --G~~eLI-~GwsnGkve~ 110 (111)
T PF14783_consen 95 --GVPELI-VGWSNGKVEV 110 (111)
T ss_pred --CceEEE-EEecCCeEEe
Confidence 123344 4588998864
No 197
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=68.12 E-value=2.8e+02 Score=33.56 Aligned_cols=148 Identities=11% Similarity=0.132 Sum_probs=85.0
Q ss_pred eCCeEEEEEEcCCC--Ce---EEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC
Q 004094 375 KEGELTIGTIDDIQ--KL---HIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 449 (774)
Q Consensus 375 ~~~~l~i~~l~~~~--~~---~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~ 449 (774)
++..+++.+..+.. +. +....++.--.+|+-.+|+.+.+++.-.-+ ...+++.+++..+|++-. .|-
T Consensus 191 dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n------~~~~~~~IieR~tWk~~~--~Lv 262 (942)
T KOG0973|consen 191 DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN------GGKSTIAIIERGTWKVDK--DLV 262 (942)
T ss_pred CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc------CCcceeEEEecCCceeee--eee
Confidence 46778888865521 11 222334444468889999988877754443 346799999999998532 222
Q ss_pred CCceEEEEEEEEEcC-----CC---------ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEec
Q 004094 450 TFEYGCSILSCSFSD-----DS---------NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLN 515 (774)
Q Consensus 450 ~~E~~~si~~~~~~~-----~~---------~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~ 515 (774)
-++.++ ..+.|.. .. ..|.++.++- .-+.|.||....-+-=++...-+..+|..++
T Consensus 263 GH~~p~--evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS--------qDrSlSVW~T~~~RPl~vi~~lf~~SI~Dms 332 (942)
T KOG0973|consen 263 GHSAPV--EVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS--------QDRSLSVWNTALPRPLFVIHNLFNKSIVDMS 332 (942)
T ss_pred cCCCce--EEEEeChHHhccccccCCccCCCcceEEEEEec--------CCccEEEEecCCCCchhhhhhhhcCceeeee
Confidence 222221 2233321 10 2343444432 2378889877533333333344566777776
Q ss_pred cc-cCe--EEEEECCEEEEEEeeecCCC
Q 004094 516 AF-NGK--LLAAINQKIQLYKWMLRDDG 540 (774)
Q Consensus 516 ~~-~~~--lv~~~g~~l~v~~~~~~~~~ 540 (774)
=- +|+ ++++.+.+|+++.+++++.|
T Consensus 333 WspdG~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 333 WSPDGFSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred EcCCCCeEEEEecCCeEEEEEcchHHhC
Confidence 33 566 45667899999998765544
No 198
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=68.06 E-value=32 Score=36.96 Aligned_cols=91 Identities=23% Similarity=0.332 Sum_probs=58.0
Q ss_pred CcEEEEecCC-CceeeeEeCCCCCcEEEEEE---CCCEEEEEEcCCeEEEEEEcC-ceEEEEE-eccCCceeEEEEeCCC
Q 004094 153 GSVRLVSSTS-RELRNEWKSPPGYSVNVATA---NASQVLLATGGGHLVYLEIGD-GILTEVK-HAQLEYEISCLDINPI 226 (774)
Q Consensus 153 ~~i~l~~~~~-~~~~~~~~~~~~~~I~~a~~---~~~~lvv~~~~~~~~~~~~~~-~~l~~~~-~~~l~~~is~l~~~~~ 226 (774)
+.|++.+... ...-..|+...+ |...+. ++...++++++|.+.+|.+.+ ++ .+. ....+.+||+|++...
T Consensus 309 ~~V~l~D~R~~~~s~~~wk~~g~--VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~--~vwt~~AHd~~ISgl~~n~~ 384 (463)
T KOG0270|consen 309 GTVALKDCRDPSNSGKEWKFDGE--VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK--PVWTLKAHDDEISGLSVNIQ 384 (463)
T ss_pred ceEEeeeccCccccCceEEeccc--eEEEEecCCCceeEEEecCCceEEeeecCCCCC--ceeEEEeccCCcceEEecCC
Confidence 4455555432 234456887554 444443 466888888899999998876 32 221 2356789999998642
Q ss_pred CCCCCCcceEEEEEecCCEEEEEECCC
Q 004094 227 GENPSYSQIAAVGMWTDISVRIFSLPD 253 (774)
Q Consensus 227 ~~~~~~~~~~~vg~~~~~~i~i~~l~~ 253 (774)
....++-+. .++.+.+|+++.
T Consensus 385 -----~p~~l~t~s-~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 385 -----TPGLLSTAS-TDKVVKLWKFDV 405 (463)
T ss_pred -----CCcceeecc-ccceEEEEeecC
Confidence 233444443 489999999875
No 199
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=67.82 E-value=7.8 Score=25.23 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhc
Q 004094 748 RMDEISKTMNVSVEELCKRVEELTR 772 (774)
Q Consensus 748 ~q~~i~~~~~~~~~~i~~~l~~l~~ 772 (774)
.+++||+-+|.++|.+.+.+..|++
T Consensus 4 tr~diA~~lG~t~ETVSR~l~~l~~ 28 (32)
T PF00325_consen 4 TRQDIADYLGLTRETVSRILKKLER 28 (32)
T ss_dssp -HHHHHHHHTS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4689999999999999999998875
No 200
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=67.43 E-value=2e+02 Score=31.55 Aligned_cols=95 Identities=20% Similarity=0.322 Sum_probs=53.1
Q ss_pred eEEEEEECCCceEEEEEECC-------CCceEEEEEEE--EEcCCC--ceEEEEEeeeeCCCCCCCcceEEEEEEEe---
Q 004094 430 HFVRLLDDQTFEFISTYPLD-------TFEYGCSILSC--SFSDDS--NVYYCVGTAYVLPEENEPTKGRILVFIVE--- 495 (774)
Q Consensus 430 ~~l~l~d~~~~~~i~~~~~~-------~~E~~~si~~~--~~~~~~--~~~i~VGT~~~~~~e~~~~~Grl~v~~i~--- 495 (774)
+.+.++|-..=.+|..-.+. ..+.+++++.. .+..+. ...++|||+ .|.+++|.+.
T Consensus 107 G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn----------~G~v~~fkIlp~~ 176 (395)
T PF08596_consen 107 GSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN----------SGNVLTFKILPSS 176 (395)
T ss_dssp SEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET----------TSEEEEEEEEE-G
T ss_pred CcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC----------CCCEEEEEEecCC
Confidence 37888887666666654332 34667776543 333333 588999993 4999999998
Q ss_pred CC--eEEEEEEE-eecCceeEecccc------------------------CeEEEEECCEEEEEEe
Q 004094 496 DG--KLQLIAEK-ETKGAVYSLNAFN------------------------GKLLAAINQKIQLYKW 534 (774)
Q Consensus 496 ~~--kl~~~~~~-~~~g~v~~i~~~~------------------------~~lv~~~g~~l~v~~~ 534 (774)
++ ..+..... ..+++|.+|+.++ ++++++..+.+++|..
T Consensus 177 ~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~ 242 (395)
T PF08596_consen 177 NGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP 242 (395)
T ss_dssp GG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred CCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence 23 34444444 4578888887662 2566666677777663
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.35 E-value=28 Score=37.06 Aligned_cols=105 Identities=21% Similarity=0.268 Sum_probs=57.1
Q ss_pred eEEEEecCcEEEEecCCCceeeeEeCCCCC--cEEEEE--ECC--CEEEEEE---cCCeEEEEEEc--Cc-eEEEEEec-
Q 004094 146 QLVQVTSGSVRLVSSTSRELRNEWKSPPGY--SVNVAT--ANA--SQVLLAT---GGGHLVYLEIG--DG-ILTEVKHA- 212 (774)
Q Consensus 146 ~~vQVT~~~i~l~~~~~~~~~~~~~~~~~~--~I~~a~--~~~--~~lvv~~---~~~~~~~~~~~--~~-~l~~~~~~- 212 (774)
.++-|+.++.++.+.+++..++. ..|.+. .+..|- .++ ..+.++. ..+.+....+. .+ .+-+..++
T Consensus 200 ~lasig~d~~~VW~~~~g~~~a~-~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~ 278 (398)
T KOG0771|consen 200 FLASIGADSARVWSVNTGAALAR-KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI 278 (398)
T ss_pred EEEEecCCceEEEEeccCchhhh-cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh
Confidence 44558888888888776544332 332222 232332 112 2333333 12233222221 11 11111111
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeE
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLIT 258 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~ 258 (774)
.-...||||+++. ..+++++|+- +|.+.||...+++.+.
T Consensus 279 ~~~~siSsl~VS~------dGkf~AlGT~-dGsVai~~~~~lq~~~ 317 (398)
T KOG0771|consen 279 KRFKSISSLAVSD------DGKFLALGTM-DGSVAIYDAKSLQRLQ 317 (398)
T ss_pred hccCcceeEEEcC------CCcEEEEecc-CCcEEEEEeceeeeeE
Confidence 1234699999964 3689999999 9999999998888754
No 202
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=66.04 E-value=24 Score=40.52 Aligned_cols=139 Identities=13% Similarity=0.116 Sum_probs=80.1
Q ss_pred EeCCeEEEEEEcCC--CCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCC
Q 004094 374 AKEGELTIGTIDDI--QKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF 451 (774)
Q Consensus 374 ~~~~~l~i~~l~~~--~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~ 451 (774)
++++.+.+..|... +++..---.=.++++++.+|+....+++..++. +.++.+|-...+-..++ +...
T Consensus 107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQD---------g~vK~~DlR~~~S~~t~-~~nS 176 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQD---------GTVKCWDLRSKKSKSTF-RSNS 176 (839)
T ss_pred cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCC---------ceEEEEeeecccccccc-cccc
Confidence 45777888888762 111000000024677899998777666665543 58999887654443333 2255
Q ss_pred ceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCe-EEEEEC--CE
Q 004094 452 EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK-LLAAIN--QK 528 (774)
Q Consensus 452 E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~-lv~~~g--~~ 528 (774)
|.+-.++ |......+++-+- -.|-|..|++..-+.-......+.|||+++.--.++ .++..| ++
T Consensus 177 ESiRDV~---fsp~~~~~F~s~~----------dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~ 243 (839)
T KOG0269|consen 177 ESIRDVK---FSPGYGNKFASIH----------DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM 243 (839)
T ss_pred hhhhcee---eccCCCceEEEec----------CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc
Confidence 6554443 4432233333221 459999999974332222224579999999866555 444444 57
Q ss_pred EEEEEee
Q 004094 529 IQLYKWM 535 (774)
Q Consensus 529 l~v~~~~ 535 (774)
+.||++.
T Consensus 244 vkiWd~t 250 (839)
T KOG0269|consen 244 VKIWDMT 250 (839)
T ss_pred EEEEecc
Confidence 8888774
No 203
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=64.25 E-value=1.5e+02 Score=29.17 Aligned_cols=172 Identities=12% Similarity=0.050 Sum_probs=91.0
Q ss_pred eEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEE-EEEeec
Q 004094 430 HFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLI-AEKETK 508 (774)
Q Consensus 430 ~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~-~~~~~~ 508 (774)
..|..+|..+++.+-+++++ .+..... . .. ...++|++ ..|+++.++...+++.-. .....+
T Consensus 46 ~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~--~~---~~~v~v~~----------~~~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 46 GNLYALDAKTGKVLWRFDLP-GPISGAP-V--VD---GGRVYVGT----------SDGSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp SEEEEEETTTSEEEEEEECS-SCGGSGE-E--EE---TTEEEEEE----------TTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred CEEEEEECCCCCEEEEeecc-cccccee-e--ec---cccccccc----------ceeeeEecccCCcceeeeecccccc
Confidence 47889999999999998883 3321111 1 11 23445555 235888888776665433 222211
Q ss_pred --C--ceeEeccccCeEEEEE-CCEEEEEEeeecCCCchhhhhhcccc---cc-----eEEEEEEEeCCEEEEEeccccE
Q 004094 509 --G--AVYSLNAFNGKLLAAI-NQKIQLYKWMLRDDGTRELQSECGHH---GH-----ILALYVQTRGDFIVVGDLMKSI 575 (774)
Q Consensus 509 --g--~v~~i~~~~~~lv~~~-g~~l~v~~~~~~~~~~~~l~~~~~~~---~~-----~~~~~l~~~~~~I~vgD~~~Sv 575 (774)
+ ...+....++.++++. +..|+.++.. +|+.......... .. .....+...++.|++++....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~---tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~- 184 (238)
T PF13360_consen 109 PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPK---TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR- 184 (238)
T ss_dssp TCSTB--SEEEEETTEEEEEETCSEEEEEETT---TTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS-
T ss_pred ccccccccCceEecCEEEEEeccCcEEEEecC---CCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe-
Confidence 1 1112222266777777 7788776632 4432221111110 00 011233344568888887776
Q ss_pred EEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccCCcEEEEeeCC
Q 004094 576 SLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNS 626 (774)
Q Consensus 576 ~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~ 626 (774)
++.++...++... .++. ....+....+++.+++.+.+|+++.++...
T Consensus 185 -~~~~d~~tg~~~w-~~~~--~~~~~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 185 -VVAVDLATGEKLW-SKPI--SGIYSLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp -EEEEETTTTEEEE-EECS--S-ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred -EEEEECCCCCEEE-EecC--CCccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence 3445666665333 3332 222222334556676777899999998754
No 204
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=63.87 E-value=2.6e+02 Score=31.63 Aligned_cols=185 Identities=14% Similarity=0.104 Sum_probs=110.5
Q ss_pred cccEEEEecCCCEEEEEEecc--C-----CCCCceeeeEEEEEECC--CceEEEEEECCCCceEEEEEEEEEcC-CCceE
Q 004094 400 HPRRICHQEQSRTFAICSLKN--Q-----SCAEESEMHFVRLLDDQ--TFEFISTYPLDTFEYGCSILSCSFSD-DSNVY 469 (774)
Q Consensus 400 tp~~i~y~~~~~~~~v~~~~~--~-----~~~~~~~~~~l~l~d~~--~~~~i~~~~~~~~E~~~si~~~~~~~-~~~~~ 469 (774)
..|++...+..+.++|=-... + |...|..+..+.++.-. ..+.+..+.-+-+. . .+.|+. +..+.
T Consensus 147 ~~r~l~~N~~qDl~ivWW~~~~~e~~PWsP~~~e~draNl~L~~~~~~klEvL~yirTE~dP--l---~~~Fs~~~~~qi 221 (545)
T PF11768_consen 147 LERHLSVNSSQDLVIVWWPSAQDEVWPWSPISSEKDRANLHLLSCSGGKLEVLSYIRTENDP--L---DVEFSLNQPYQI 221 (545)
T ss_pred cceeEeeccCCCEEEEEecCCCCCcCCCCCccccchhccEEEEEecCCcEEEEEEEEecCCc--E---EEEccCCCCcEE
Confidence 356777776666665532221 1 22344455666666442 35666655544333 1 233443 45777
Q ss_pred EEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE--eecCceeEeccc--cCeE-EEEECCEEEEEEeeecCCCchhh
Q 004094 470 YCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK--ETKGAVYSLNAF--NGKL-LAAINQKIQLYKWMLRDDGTREL 544 (774)
Q Consensus 470 i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~--~~~g~v~~i~~~--~~~l-v~~~g~~l~v~~~~~~~~~~~~l 544 (774)
..|.-.....+| ..=.--+|++.++|++-+.-. ..+.+|.+.+-- .+++ +.|....|.+|+-.. ++
T Consensus 222 ~tVE~s~s~~g~---~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~------~~ 292 (545)
T PF11768_consen 222 HTVEQSISVKGE---PSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTR------GV 292 (545)
T ss_pred EEEEEecCCCCC---ceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCC------Ce
Confidence 888877655443 333445778878888866544 457777776643 4565 456678999988421 11
Q ss_pred hhhcccccceEEEEEEE--eCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeE
Q 004094 545 QSECGHHGHILALYVQT--RGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 600 (774)
Q Consensus 545 ~~~~~~~~~~~~~~l~~--~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~ 600 (774)
...+ +....|+.+.+ .|..++||.-..=++++..--.+-++.+++.|..|..+.
T Consensus 293 t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L 348 (545)
T PF11768_consen 293 TLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTL 348 (545)
T ss_pred eeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEE
Confidence 1111 22234566666 456999999998888754444566778888898887764
No 205
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=63.83 E-value=23 Score=35.75 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=50.7
Q ss_pred EEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc--cC------eEEEEEC
Q 004094 455 CSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF--NG------KLLAAIN 526 (774)
Q Consensus 455 ~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~--~~------~lv~~~g 526 (774)
.||...-+..++..-++||..-. ....-+|.+|+ -..+..+....+.+.+|+.| +. -|.+|.|
T Consensus 18 sC~~l~Dl~gDGd~kLvvaD~g~-----~~~~~kLKVyk----Gt~l~~E~~L~d~P~ai~sFy~d~~ep~~P~iAVA~G 88 (257)
T PF14779_consen 18 SCMALADLQGDGDYKLVVADLGT-----GDQNMKLKVYK----GTSLISEITLPDLPSAIVSFYMDEHEPRTPAIAVAAG 88 (257)
T ss_pred ceeEeeecCCCCeEEEEEEecCC-----cCCCceEEEEc----CCChhhcccccCCCeEEEEEeccCCCCCCCeEEEEeC
Confidence 46666666777888888887421 11223888883 45667778889999999998 11 3889999
Q ss_pred CEEEEEE
Q 004094 527 QKIQLYK 533 (774)
Q Consensus 527 ~~l~v~~ 533 (774)
+.|++|+
T Consensus 89 ~~vyiYk 95 (257)
T PF14779_consen 89 PSVYIYK 95 (257)
T ss_pred CEEEEEe
Confidence 9999987
No 206
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=63.49 E-value=2e+02 Score=35.54 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=69.2
Q ss_pred EeCCCCCcEEEEE-E-CCCEEEEEEcCCeEEEEEEcC--ce---EEEEEeccC--Cc-eeEEEEeCCCCCCCCCcceEEE
Q 004094 169 WKSPPGYSVNVAT-A-NASQVLLATGGGHLVYLEIGD--GI---LTEVKHAQL--EY-EISCLDINPIGENPSYSQIAAV 238 (774)
Q Consensus 169 ~~~~~~~~I~~a~-~-~~~~lvv~~~~~~~~~~~~~~--~~---l~~~~~~~l--~~-~is~l~~~~~~~~~~~~~~~~v 238 (774)
|.+ .|.++...+ + ++++++++.++|.+..+.++. .+ ........+ +. -+++-++.. . ..+..++.
T Consensus 1094 ys~-~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~--~--~~S~~lvy 1168 (1431)
T KOG1240|consen 1094 YSP-EGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTA--I--VQSHVLVY 1168 (1431)
T ss_pred Eec-cCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccc--c--ccceeEEE
Confidence 443 556666655 3 477999998889988888765 11 112222222 22 233333321 1 12445666
Q ss_pred EEecCCEEEEEECCCCCeeEEecCC-CccCceeEEeeeecCeeEEEEEeCCCcEEEEEEec
Q 004094 239 GMWTDISVRIFSLPDLNLITKEHLG-GEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 239 g~~~~~~i~i~~l~~~~~~~~~~l~-~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 298 (774)
++- .+.+..|......-.++...+ ......|+++-+ ...++++|+..|.+..|.+..
T Consensus 1169 ~T~-~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp--~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1169 ATD-LSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP--WCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred EEe-ccceEEecchhhhhHHhhhcCccccceeEEEecC--CceEEEEecCCceEEEEEeec
Confidence 665 678888887554333321111 012334555543 346999999999999998765
No 207
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=63.30 E-value=1e+02 Score=34.87 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=56.6
Q ss_pred eEEEEEeCCC--cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEEC--CCceEEEEEECCCCceEEEEEEEEEcCC
Q 004094 390 LHIRSIPLGE--HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDD--QTFEFISTYPLDTFEYGCSILSCSFSDD 465 (774)
Q Consensus 390 ~~~~~i~l~~--tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~--~~~~~i~~~~~~~~E~~~si~~~~~~~~ 465 (774)
...||+.+.+ .|.-|+|++..+..+|++..- ..|.+++- .++.-+.++.++.+|++-.+|. -.+
T Consensus 328 T~trKV~IPGILvPDliAfn~kaq~VAVASNTc---------n~ilVYSv~~s~mPniQqIqLe~~ERPKGiCF---ltd 395 (671)
T PF15390_consen 328 TTTRKVSIPGILVPDLIAFNPKAQVVAVASNTC---------NIILVYSVTPSSMPNIQQIQLESNERPKGICF---LTD 395 (671)
T ss_pred EEeeeeccccccccceeeeCCcCCEEEEEecCC---------cEEEEEEeccccCCCeeEEEcccCCCCceeeE---ccC
Confidence 3678888876 699999999999999987542 24555543 5677788999999999988874 345
Q ss_pred CceEEEEEeee
Q 004094 466 SNVYYCVGTAY 476 (774)
Q Consensus 466 ~~~~i~VGT~~ 476 (774)
+--.|.||--.
T Consensus 396 klLLilVGkqK 406 (671)
T PF15390_consen 396 KLLLILVGKQK 406 (671)
T ss_pred CeEEEEecccc
Confidence 66777888654
No 208
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=63.05 E-value=18 Score=41.87 Aligned_cols=119 Identities=18% Similarity=0.141 Sum_probs=70.7
Q ss_pred EEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCc--eeEeccccCeEE
Q 004094 445 TYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGA--VYSLNAFNGKLL 522 (774)
Q Consensus 445 ~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~--v~~i~~~~~~lv 522 (774)
.++|.....+.++.+|.- ..++++|..-.. ...|.+-+|-=. +. ...++.-| ++++|=....++
T Consensus 8 kIE~~Dsdavsti~SWHP---sePlfAVA~fS~------er~GSVtIfadt-GE----Pqr~Vt~P~hatSLCWHpe~~v 73 (1416)
T KOG3617|consen 8 KIEFLDSDAVSTISSWHP---SEPLFAVASFSP------ERGGSVTIFADT-GE----PQRDVTYPVHATSLCWHPEEFV 73 (1416)
T ss_pred eeecccccccccccccCC---CCceeEEEEecC------CCCceEEEEecC-CC----CCcccccceehhhhccChHHHH
Confidence 467777777888888853 378999986432 245788777322 11 12233333 445665566677
Q ss_pred EEECCE---EEEEEeeecCCCchhhhhh-cccccceEEEEEEEeCCEEEEEeccccEEEEEEEc
Q 004094 523 AAINQK---IQLYKWMLRDDGTRELQSE-CGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKH 582 (774)
Q Consensus 523 ~~~g~~---l~v~~~~~~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~ 582 (774)
.++|-. +.++. .+.++.... ..+...+..+.-+-.|+.++.+|.+.++.+++|+.
T Consensus 74 La~gwe~g~~~v~~-----~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 74 LAQGWEMGVSDVQK-----TNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred HhhccccceeEEEe-----cCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 777633 33433 122333322 22222233334445789999999999999999984
No 209
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=62.59 E-value=31 Score=33.74 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=42.9
Q ss_pred EeecCceeE--eccccCeEEEEECCEEEEEEeeecCCCchh--hhh----hcccccceEEEEEEEeCCEEEEEecccc
Q 004094 505 KETKGAVYS--LNAFNGKLLAAINQKIQLYKWMLRDDGTRE--LQS----ECGHHGHILALYVQTRGDFIVVGDLMKS 574 (774)
Q Consensus 505 ~~~~g~v~~--i~~~~~~lv~~~g~~l~v~~~~~~~~~~~~--l~~----~~~~~~~~~~~~l~~~~~~I~vgD~~~S 574 (774)
...+.++.+ .|++.|.|++|+++++.+|.+....-...+ +.. .......+.+..+..+++||.+-+-.+-
T Consensus 131 lPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic~~yiA~~s~~ev 208 (215)
T PF14761_consen 131 LPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAICEGYIAVMSDLEV 208 (215)
T ss_pred ecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEEEEeeEEEEecCCEE
Confidence 344556664 466789999999999999987532110111 111 1122223457788889999887655443
No 210
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=61.37 E-value=66 Score=36.26 Aligned_cols=104 Identities=17% Similarity=0.254 Sum_probs=62.3
Q ss_pred CCEEEEEEcCCeEEEEEEcCceEEEEEe------ccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCee
Q 004094 184 ASQVLLATGGGHLVYLEIGDGILTEVKH------AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLI 257 (774)
Q Consensus 184 ~~~lvv~~~~~~~~~~~~~~~~l~~~~~------~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~ 257 (774)
+..+.|+.+++.+-.+++..+.+.+... ......|..+.+-++. ++.++++.+ |.+|++|+|...+.-
T Consensus 640 ~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA-----advLa~asy-d~Ti~lWDl~~~~~~ 713 (1012)
T KOG1445|consen 640 DERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA-----ADVLAVASY-DSTIELWDLANAKLY 713 (1012)
T ss_pred hHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh-----hhHhhhhhc-cceeeeeehhhhhhh
Confidence 4578888888988888886644332211 1234568888887653 688999999 999999999765442
Q ss_pred EEecCCC-ccCceeEEeeeecCeeEEEEEeCCCcEEEEEEe
Q 004094 258 TKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLN 297 (774)
Q Consensus 258 ~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~ 297 (774)
+. +.. .-..-+++-.. +...+---.+||.+.+|+-.
T Consensus 714 ~~--l~gHtdqIf~~AWSp--dGr~~AtVcKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 714 SR--LVGHTDQIFGIAWSP--DGRRIATVCKDGTLRVYEPR 750 (1012)
T ss_pred he--eccCcCceeEEEECC--CCcceeeeecCceEEEeCCC
Confidence 11 100 00001111111 22334445689999998743
No 211
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=61.25 E-value=2.9e+02 Score=31.46 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=74.2
Q ss_pred EecCCCEEEEEEeccC--CCCCceeeeEEEEEECCCceEEEEE-ECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCC
Q 004094 406 HQEQSRTFAICSLKNQ--SCAEESEMHFVRLLDDQTFEFISTY-PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEEN 482 (774)
Q Consensus 406 y~~~~~~~~v~~~~~~--~~~~~~~~~~l~l~d~~~~~~i~~~-~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~ 482 (774)
.+++...|-|++.... ...+......|-++| .+++.+.+. .+.++|+|.|+..+ +...++|.=-...|
T Consensus 278 mdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~-----Gd~~Y~VTFrqvDP--- 348 (521)
T PF09826_consen 278 MDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLD-EDLKIVGSLEGLAPGERIYSVRFM-----GDRAYLVTFRQVDP--- 348 (521)
T ss_pred EeccCCEEEEEEecCcccccCCCCceEEEEEEC-CCCcEeEEccccCCCceEEEEEEe-----CCeEEEEEEeecCc---
Confidence 3555567777766532 123334567888888 678888776 68999999988654 23334443333332
Q ss_pred CCcceEEEEEEEeC-CeEEEEEEEeecCceeEeccccCeEEEEECCEE
Q 004094 483 EPTKGRILVFIVED-GKLQLIAEKETKGAVYSLNAFNGKLLAAINQKI 529 (774)
Q Consensus 483 ~~~~Grl~v~~i~~-~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g~~l 529 (774)
|+++++.+ .+-+++.+.+++|==.-+.++++..+.++|+.-
T Consensus 349 ------LfviDLsdP~~P~vlGeLKIPGfS~YLHP~~e~~LlGiG~~~ 390 (521)
T PF09826_consen 349 ------LFVIDLSDPANPKVLGELKIPGFSDYLHPYDENHLLGIGKDT 390 (521)
T ss_pred ------eEEEECCCCCCCceeeEEECccchhceeECCCCeEEEEcccC
Confidence 56777765 468899999999988888888888888888643
No 212
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=61.16 E-value=72 Score=35.97 Aligned_cols=92 Identities=14% Similarity=0.106 Sum_probs=53.9
Q ss_pred CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc--cCeEEEEECCEEEEEEeeecCCCchh
Q 004094 466 SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF--NGKLLAAINQKIQLYKWMLRDDGTRE 543 (774)
Q Consensus 466 ~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~--~~~lv~~~g~~l~v~~~~~~~~~~~~ 543 (774)
++..++|=|+... -.++++.-..-++.......|-|+|-|=- +.+|++|+|+.++-|-|+. .++.
T Consensus 123 k~~iL~VLT~~dv----------SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~---~qKt 189 (671)
T PF15390_consen 123 KKAILTVLTARDV----------SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS---AQKT 189 (671)
T ss_pred CCceEEEEecCce----------eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC---chhh
Confidence 4678888886422 13444443333344445678888887754 4579999999999999963 3455
Q ss_pred hhhhcccccce---EEEEEEEe-CCEEEEEe
Q 004094 544 LQSECGHHGHI---LALYVQTR-GDFIVVGD 570 (774)
Q Consensus 544 l~~~~~~~~~~---~~~~l~~~-~~~I~vgD 570 (774)
|.+..+...+. ++-++... +..|.|++
T Consensus 190 L~~CsfcPVFdv~~~Icsi~AT~dsqVAvaT 220 (671)
T PF15390_consen 190 LHRCSFCPVFDVGGYICSIEATVDSQVAVAT 220 (671)
T ss_pred hhhCCcceeecCCCceEEEEEeccceEEEEe
Confidence 66544433221 33334332 33555554
No 213
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.46 E-value=3.5e+02 Score=32.12 Aligned_cols=76 Identities=20% Similarity=0.175 Sum_probs=52.5
Q ss_pred ECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe---CCeEEEEEEEeecCceeEecccc-Ce--
Q 004094 447 PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE---DGKLQLIAEKETKGAVYSLNAFN-GK-- 520 (774)
Q Consensus 447 ~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~---~~kl~~~~~~~~~g~v~~i~~~~-~~-- 520 (774)
.++.++.+.|...++- .-..+|+|-+ .|.++.++=+ ++-.+......-++|||++.-.+ +.
T Consensus 120 ~np~~~~p~s~l~Vs~---~l~~Iv~Gf~----------nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 120 KNPTNPSPASSLAVSE---DLKTIVCGFT----------NGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred CCCCCCCcceEEEEEc---cccEEEEEec----------CcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 4556777777766543 2577888863 4888777533 23346666667799999998763 33
Q ss_pred EEEEECCEEEEEEee
Q 004094 521 LLAAINQKIQLYKWM 535 (774)
Q Consensus 521 lv~~~g~~l~v~~~~ 535 (774)
+.++.-+.|.+|.+.
T Consensus 187 lFv~Tt~~V~~y~l~ 201 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLS 201 (933)
T ss_pred EEEEecceeEEEEec
Confidence 577888889999875
No 214
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=60.31 E-value=19 Score=40.94 Aligned_cols=106 Identities=10% Similarity=0.209 Sum_probs=58.8
Q ss_pred CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc--cCeEEEEE--CCEEEEEEeeecCCCc
Q 004094 466 SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF--NGKLLAAI--NQKIQLYKWMLRDDGT 541 (774)
Q Consensus 466 ~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~--~~~lv~~~--g~~l~v~~~~~~~~~~ 541 (774)
...|+++|+ ..|.+|+|.-..++...+... ....+++++.+ .++++++. +..|.+|.++......
T Consensus 44 t~~~l~~Gs----------S~G~lyl~~R~~~~~~~~~~~-~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 44 TEEYLAMGS----------SAGSVYLYNRHTGEMRKLKNE-GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred CCceEEEec----------ccceEEEEecCchhhhccccc-CccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 478999998 569999998654444433321 23333333333 45665544 4566677654311111
Q ss_pred hhhhhhcccccceEEEEEEEeCC--EEEEEeccccEEEEEEEc
Q 004094 542 RELQSECGHHGHILALYVQTRGD--FIVVGDLMKSISLLIYKH 582 (774)
Q Consensus 542 ~~l~~~~~~~~~~~~~~l~~~~~--~I~vgD~~~Sv~~~~~~~ 582 (774)
....+.+.......++++.+..| +++.||...=|.+.+.+.
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11222221111234566777554 899999988777766554
No 215
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=59.62 E-value=1.3e+02 Score=31.37 Aligned_cols=250 Identities=19% Similarity=0.298 Sum_probs=126.4
Q ss_pred eEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCC
Q 004094 235 IAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQ 314 (774)
Q Consensus 235 ~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~ 314 (774)
.++-|.- |++|.||...+++++.. |.+ ...|++.+++.. -.++-|+.|..+.+|.++. |+.-. .-++-.
T Consensus 209 kiVSGlr-DnTikiWD~n~~~c~~~--L~G--HtGSVLCLqyd~-rviisGSSDsTvrvWDv~t--ge~l~---tlihHc 277 (499)
T KOG0281|consen 209 KIVSGLR-DNTIKIWDKNSLECLKI--LTG--HTGSVLCLQYDE-RVIVSGSSDSTVRVWDVNT--GEPLN---TLIHHC 277 (499)
T ss_pred hhhcccc-cCceEEeccccHHHHHh--hhc--CCCcEEeeeccc-eEEEecCCCceEEEEeccC--Cchhh---HHhhhc
Confidence 3444555 99999999988766321 211 223555555543 3577799999999988775 33211 122222
Q ss_pred CeEEE-EEEeCCcceEEEecCCCeEE-Eec--CCc-EEEeeecccCceeeecccCCCCCCcEEE-Ee-CCeEEEEEEcCC
Q 004094 315 PITLR-TFSSKNTTHVFAASDRPTVI-YSS--NKK-LLYSNVNLKEVSHMCPFNSAAFPDSLAI-AK-EGELTIGTIDDI 387 (774)
Q Consensus 315 pv~l~-~~~~~~~~~v~~~~~~p~~l-~~~--~~~-~~~~~~~~~~i~~~~~f~~~~~~~~l~~-~~-~~~l~i~~l~~~ 387 (774)
-..|+ .|. ++.+++|++-.-+ .++ .+. .....+- +-.-+..+...+.+-++. ++ +..++...+.+.
T Consensus 278 eaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVL---vGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~ 350 (499)
T KOG0281|consen 278 EAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVL---VGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTC 350 (499)
T ss_pred ceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHH---hhhhhheeeeccccceEEEecCCceEEEEeccce
Confidence 21222 122 3566655443221 111 111 0000000 011223333344444443 44 455676666543
Q ss_pred CCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCce-EEEEEEEEEcCCC
Q 004094 388 QKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEY-GCSILSCSFSDDS 466 (774)
Q Consensus 388 ~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~-~~si~~~~~~~~~ 466 (774)
. .+|.+ .+--|-|+-.+....++|..+.. ..|++.|-..+..+.. ++-+|. +-| +.|.
T Consensus 351 e--fvRtl--~gHkRGIAClQYr~rlvVSGSSD---------ntIRlwdi~~G~cLRv--LeGHEeLvRc---iRFd--- 409 (499)
T KOG0281|consen 351 E--FVRTL--NGHKRGIACLQYRDRLVVSGSSD---------NTIRLWDIECGACLRV--LEGHEELVRC---IRFD--- 409 (499)
T ss_pred e--eehhh--hcccccceehhccCeEEEecCCC---------ceEEEEeccccHHHHH--HhchHHhhhh---eeec---
Confidence 1 23322 23334566666667777765442 2789988876655432 233443 333 3454
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeC--------CeEEEEEEEeecCceeEeccccCe-EEEEE-CCEEEEEEe
Q 004094 467 NVYYCVGTAYVLPEENEPTKGRILVFIVED--------GKLQLIAEKETKGAVYSLNAFNGK-LLAAI-NQKIQLYKW 534 (774)
Q Consensus 467 ~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~--------~kl~~~~~~~~~g~v~~i~~~~~~-lv~~~-g~~l~v~~~ 534 (774)
.+-|+-|. ..|.|.+|++.- +.+-+.+--+..|.|..+. |+.+ |+++. ..+|.+|++
T Consensus 410 ~krIVSGa----------YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ-FD~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 410 NKRIVSGA----------YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ-FDEFQIISSSHDDTILIWDF 476 (499)
T ss_pred Cceeeecc----------ccceEEEEecccccCCcccccchHHHhhhhccceeEEEe-ecceEEEeccCCCeEEEEEc
Confidence 23455443 348999998861 2344444455677777766 5554 44333 356666665
No 216
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=58.76 E-value=2e+02 Score=30.03 Aligned_cols=109 Identities=20% Similarity=0.304 Sum_probs=63.4
Q ss_pred EEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC-eEEEEEEEeecCceeEecc--ccCeEEEEECCEEEEEEeeec
Q 004094 461 SFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG-KLQLIAEKETKGAVYSLNA--FNGKLLAAINQKIQLYKWMLR 537 (774)
Q Consensus 461 ~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~-kl~~~~~~~~~g~v~~i~~--~~~~lv~~~g~~l~v~~~~~~ 537 (774)
.|..-....++||+-. -++=+|.-.+. -|.+++ ...|.||.++- ..++|+.+..+.=+|..|+.+
T Consensus 214 a~sP~~~~~~a~gsY~----------q~~giy~~~~~~pl~llg--gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 214 AFSPMDSKTLAVGSYG----------QRVGIYNDDGRRPLQLLG--GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred eccCCCCcceeeeccc----------ceeeeEecCCCCceeeec--ccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 3444445688999843 23444544333 366666 67999998764 467898888765555556533
Q ss_pred CCC--chhhhhhcccccce-EEEEEEEeCCEEEEEeccccEEEEEEEc
Q 004094 538 DDG--TRELQSECGHHGHI-LALYVQTRGDFIVVGDLMKSISLLIYKH 582 (774)
Q Consensus 538 ~~~--~~~l~~~~~~~~~~-~~~~l~~~~~~I~vgD~~~Sv~~~~~~~ 582 (774)
.-. ..+|.+... ++.- .-..+...++.+.-||-..+|.++..+.
T Consensus 282 ~~~~pv~~L~rhv~-~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 282 YSRDPVYALERHVG-DTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hccchhhhhhhhcc-CccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 211 123333221 0111 1234566788888899999998866554
No 217
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=58.36 E-value=3.2e+02 Score=30.97 Aligned_cols=325 Identities=11% Similarity=0.139 Sum_probs=147.2
Q ss_pred CEEEEEEcCCeEEEEEEcC--ceE-EEE--EeccCC-------ceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECC
Q 004094 185 SQVLLATGGGHLVYLEIGD--GIL-TEV--KHAQLE-------YEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 252 (774)
Q Consensus 185 ~~lvv~~~~~~~~~~~~~~--~~l-~~~--~~~~l~-------~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~ 252 (774)
+.++|+.+.+.+..++++. .++ .+. ...++. ..-.-+++.| .+..++++.+ ++.+.||.+.
T Consensus 1 D~L~v~tdsg~l~~l~~~~~~~~~~~~~v~~~~~~~~~~~r~~~~G~~l~vDP------~~R~i~v~a~-e~~~~v~~l~ 73 (504)
T PF10433_consen 1 DSLVVTTDSGKLSILEYDPSTHGFFKEFVHQWEPLSKSGSRLSQPGQYLAVDP------SGRCIAVSAY-EGNFLVYPLN 73 (504)
T ss_dssp -EEEEEETTTEEEEEEEEEETTEE-E-EEEEEEE---SSSEB-TT--EEEE-T------TSSEEEEEEB-TTEEEEEE-S
T ss_pred CEEEEEECCCCEEEEEEECCCCccceeeEEEeEecCCCCCChhcCCcEEEECC------cCCEEEEEec-CCeEEEEEec
Confidence 3578888888888888764 232 211 011111 1112345544 3678889989 9999999986
Q ss_pred C-----C--CeeEEecCCCccCceeEEeee--ec-CeeEE--EEEeCCCc--EEEEEEecCCCcccccee--ee--c---
Q 004094 253 D-----L--NLITKEHLGGEIIPRSVLLCA--FE-GISYL--LCALGDGH--LLNFLLNMKTGELTDRKK--VS--L--- 311 (774)
Q Consensus 253 ~-----~--~~~~~~~l~~~~~p~si~~~~--~~-~~~~L--~vgl~~G~--l~~y~~~~~~~~l~~~~~--~~--l--- 311 (774)
. . ......++..+....+++++. .+ ..+.+ +.-..++. +..|+++...+-....++ .. +
T Consensus 74 ~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~ 153 (504)
T PF10433_consen 74 RSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNE 153 (504)
T ss_dssp S----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-EEEEEEEE--------EETTTTEEEE--EEE
T ss_pred ccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecccceeEEEeeecccccceeeeecccccccccc
Confidence 5 0 001111221112233444442 11 22222 22222222 455665433221111111 11 1
Q ss_pred CCCCeEEEEEEeCCcceEEEecCCCeEEEec---CCcEEEeeecc-----cCcee-ee-ccc---CCCCCCcEEEEe-CC
Q 004094 312 GTQPITLRTFSSKNTTHVFAASDRPTVIYSS---NKKLLYSNVNL-----KEVSH-MC-PFN---SAAFPDSLAIAK-EG 377 (774)
Q Consensus 312 G~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~---~~~~~~~~~~~-----~~i~~-~~-~f~---~~~~~~~l~~~~-~~ 377 (774)
-..|..|.|+.. ...+++++++.-.+.... .+...+.++.. .++.. .+ |.. .....+.+++.+ .|
T Consensus 154 ~~~p~~LIPlp~-~~ggllV~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G 232 (504)
T PF10433_consen 154 DELPSFLIPLPN-PPGGLLVGGENIIIYKNHLIGSGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDG 232 (504)
T ss_dssp E-TTEEEEEE-T-TT-SEEEEESSEEEEEE------TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTS
T ss_pred CCCccEEEEcCC-CCcEEEEECCEEEEEecccccccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCC
Confidence 134677888753 345677777765544421 12222223321 12211 11 111 111123455554 67
Q ss_pred eEEEEEEcCCC-CeEEEEEeC-CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEE
Q 004094 378 ELTIGTIDDIQ-KLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGC 455 (774)
Q Consensus 378 ~l~i~~l~~~~-~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~ 455 (774)
.|....+.... .+.++.+-- ...+..++|....+-++++.++. + -+.+.-+....++.++++. ..--+.
T Consensus 233 ~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~---g----ds~l~~~~~~~l~~~~~~~--N~~Pi~ 303 (504)
T PF10433_consen 233 DLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEF---G----DSQLLQISLSNLEVLDSLP--NWGPIV 303 (504)
T ss_dssp EEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESS---S-----EEEEEEESESEEEEEEE------SEE
T ss_pred eEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEec---C----CcEEEEEeCCCcEEEEecc--CcCCcc
Confidence 88888887654 344444432 34567788887653455555443 1 1344444555566665442 222355
Q ss_pred EEEEEEEcCCCce------EEEEEeeeeCCCCCCCcceEEEEEEEeCCeEE--EEEEEeecCceeEeccc------cCeE
Q 004094 456 SILSCSFSDDSNV------YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQ--LIAEKETKGAVYSLNAF------NGKL 521 (774)
Q Consensus 456 si~~~~~~~~~~~------~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~--~~~~~~~~g~v~~i~~~------~~~l 521 (774)
.++.......+.. -++.+++. -.+|.|.+++-. -..+ .+...+.+| |+.+=.+ ..+|
T Consensus 304 D~~v~~~~~~~~~~~~~~~~lv~~sG~-------g~~gsL~~lr~G-i~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~l 374 (504)
T PF10433_consen 304 DFCVVDSSNSGQPSNPSSDQLVACSGA-------GKRGSLRILRNG-IGIEGLELASSELPG-VTGIWTLKLSSSDHSYL 374 (504)
T ss_dssp EEEEE-TSSSSS-------EEEEEESS-------GGG-EEEEEEES-BEEE--EEEEEEEST-EEEEEEE-SSSSSBSEE
T ss_pred ceEEeccccCCCCcccccceEEEEECc-------CCCCcEEEEecc-CCceeeeeeccCCCC-ceEEEEeeecCCCceEE
Confidence 5555433322222 55555543 257999888642 1455 666677777 6665444 3478
Q ss_pred EEEECCEEEEEEee
Q 004094 522 LAAINQKIQLYKWM 535 (774)
Q Consensus 522 v~~~g~~l~v~~~~ 535 (774)
+++.-..-+++++.
T Consensus 375 v~S~~~~T~vl~~~ 388 (504)
T PF10433_consen 375 VLSFPNETRVLQIS 388 (504)
T ss_dssp EEEESSEEEEEEES
T ss_pred EEEcCCceEEEEEe
Confidence 88888888888874
No 218
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=58.12 E-value=2.3e+02 Score=29.25 Aligned_cols=133 Identities=11% Similarity=-0.008 Sum_probs=84.0
Q ss_pred EEEEEeCC----eEEEEEEEeecCceeEeccccCeEEEEEC-CEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCC
Q 004094 490 LVFIVEDG----KLQLIAEKETKGAVYSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGD 564 (774)
Q Consensus 490 ~v~~i~~~----kl~~~~~~~~~g~v~~i~~~~~~lv~~~g-~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 564 (774)
.++++.+- ...++.....++-+..+..-.++.++|-+ +-+++++....+ +-.+ ..++.+.-++-...+.||
T Consensus 64 ~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~--sP~~--~~~lnt~gyaygv~vsGn 139 (370)
T COG5276 64 AILDITNVSLQTHDVLLSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPD--SPTL--IGFLNTDGYAYGVYVSGN 139 (370)
T ss_pred eeccccCcccccCcceEEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCC--Ccce--eccccCCceEEEEEecCC
Confidence 45566532 23344445556666666655667666655 457887765332 1222 344444345555677899
Q ss_pred EEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccCCcEEEEeeCCC
Q 004094 565 FIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSE 627 (774)
Q Consensus 565 ~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~~ 627 (774)
+.+|+|.-.++-++.. .++.+=.+.+|-..+-|-+.-..++.+.-.+++.++.|.++.....
T Consensus 140 ~aYVadlddgfLivdv-sdpssP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp 201 (370)
T COG5276 140 YAYVADLDDGFLIVDV-SDPSSPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNP 201 (370)
T ss_pred EEEEeeccCcEEEEEC-CCCCCceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCC
Confidence 9999999999655432 2344456667776676665555667677778999999999998643
No 219
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=56.38 E-value=1.2e+02 Score=33.18 Aligned_cols=40 Identities=23% Similarity=0.210 Sum_probs=30.8
Q ss_pred EECCCCceEEEEEEEEEcCCC-------ceEEEEEeeeeCCCCCCCcceEEEEEEEe
Q 004094 446 YPLDTFEYGCSILSCSFSDDS-------NVYYCVGTAYVLPEENEPTKGRILVFIVE 495 (774)
Q Consensus 446 ~~~~~~E~~~si~~~~~~~~~-------~~~i~VGT~~~~~~e~~~~~Grl~v~~i~ 495 (774)
.+.+++|.|++++.+-+...+ ..+|+||+ +.|.|.+|.-.
T Consensus 51 l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~----------ssG~vrfyte~ 97 (415)
T PF14655_consen 51 LDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGT----------SSGYVRFYTEN 97 (415)
T ss_pred ccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEe----------cccEEEEEecc
Confidence 455566999999988874433 68999999 45999999764
No 220
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.67 E-value=1e+02 Score=36.05 Aligned_cols=178 Identities=14% Similarity=0.107 Sum_probs=0.0
Q ss_pred eEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeec--CeeEEEEEeCCCcEEEEE
Q 004094 218 ISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFE--GISYLLCALGDGHLLNFL 295 (774)
Q Consensus 218 is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~--~~~~L~vgl~~G~l~~y~ 295 (774)
+||.++. ..++++|+. .|.++++..+. .|.....+.-. +..|+..+..||.+++..
T Consensus 42 is~~av~--------~~~~~~GtH-~g~v~~~~~~~-------------~~~~~~~~s~~~~~Gey~asCS~DGkv~I~s 99 (846)
T KOG2066|consen 42 ISCCAVH--------DKFFALGTH-RGAVYLTTCQG-------------NPKTNFDHSSSILEGEYVASCSDDGKVVIGS 99 (846)
T ss_pred HHHHHhh--------cceeeeccc-cceEEEEecCC-------------cccccccccccccCCceEEEecCCCcEEEee
Q ss_pred EecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCC-eEEEecC--CcEEEeeecc--cCceeeecccCCCCCCc
Q 004094 296 LNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRP-TVIYSSN--KKLLYSNVNL--KEVSHMCPFNSAAFPDS 370 (774)
Q Consensus 296 ~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p-~~l~~~~--~~~~~~~~~~--~~i~~~~~f~~~~~~~~ 370 (774)
+.. +...-.-...--.+.|.|.|--+...+.=|+.|... .+++..+ ++..-.-+.. ++|.++.-- .+.
T Consensus 100 l~~--~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~-----g~l 172 (846)
T KOG2066|consen 100 LFT--DDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR-----GNL 172 (846)
T ss_pred ccC--CccceeEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec-----CcE
Q ss_pred EEEEeCCeEEEEEEcCCC-----CeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEE
Q 004094 371 LAIAKEGELTIGTIDDIQ-----KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLD 436 (774)
Q Consensus 371 l~~~~~~~l~i~~l~~~~-----~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d 436 (774)
+..+++.+++++..+..+ +++.++......|-++.+.++.++++ .|...|++..
T Consensus 173 IAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI------------GW~d~v~i~~ 231 (846)
T KOG2066|consen 173 IAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI------------GWGDSVKICS 231 (846)
T ss_pred EEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE------------ecCCeEEEEE
No 221
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=55.37 E-value=39 Score=38.05 Aligned_cols=109 Identities=14% Similarity=0.127 Sum_probs=63.4
Q ss_pred CCEEEEEEcCCeEEEEEEcCceEE--EE-EeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEE-
Q 004094 184 ASQVLLATGGGHLVYLEIGDGILT--EV-KHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITK- 259 (774)
Q Consensus 184 ~~~lvv~~~~~~~~~~~~~~~~l~--~~-~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~- 259 (774)
...+.++.+.|.+..|....-.+. +. -+..+.+.-.-+++...+ .+..+|.--.|.+++.|++..-+++..
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-----ge~~lVsasGDsT~r~Wdvk~s~l~G~~ 138 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-----GESLLVSASGDSTIRPWDVKTSRLVGGR 138 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-----CceeEEEccCCceeeeeeeccceeecce
Confidence 557777777777777665432222 21 122334444455655443 344556666689999999987555432
Q ss_pred ecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEec
Q 004094 260 EHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 260 ~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 298 (774)
..++.....+|+++...+ ...+..|.+||.++.|.+..
T Consensus 139 ~~~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illWD~R~ 176 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTN-PAVFCTGGRDGEILLWDCRC 176 (720)
T ss_pred eecccccccchhhhccCC-CcceeeccCCCcEEEEEEec
Confidence 122222344577766543 23344599999999998754
No 222
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=54.30 E-value=2.5e+02 Score=28.47 Aligned_cols=156 Identities=13% Similarity=0.194 Sum_probs=84.6
Q ss_pred eEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC-e-E------EEEE-EEeecCceeEeccc---cCe
Q 004094 453 YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG-K-L------QLIA-EKETKGAVYSLNAF---NGK 520 (774)
Q Consensus 453 ~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~-k-l------~~~~-~~~~~g~v~~i~~~---~~~ 520 (774)
.++|.. |.+..+...++++|- ..|.+.+|++..+ + + +.+. ...+++||.++..- +..
T Consensus 152 svmc~~-~~~~c~s~~lllaGy----------Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rG 220 (323)
T KOG0322|consen 152 SVMCQD-KDHACGSTFLLLAGY----------ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRG 220 (323)
T ss_pred ceeeee-ccccccceEEEEEec----------cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCC
Confidence 345554 445544556666663 4599999999743 1 1 1111 23568899988743 455
Q ss_pred EEEEECCEEEEEEeeecCCCchhhhhhccccc-ceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCccee
Q 004094 521 LLAAINQKIQLYKWMLRDDGTRELQSECGHHG-HILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWM 599 (774)
Q Consensus 521 lv~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v 599 (774)
+.-+.+.++..|.++.. .+...+...-.... -...+.|...+..+..+---+-+-++.|+.- +.|-++. ++.--|
T Consensus 221 isgga~dkl~~~Sl~~s-~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~pLAVLk--yHsagv 296 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHS-TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-NPLAVLK--YHSAGV 296 (323)
T ss_pred cCCCccccceeeeeccc-cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC-Cchhhhh--hhhcce
Confidence 77788889999888642 23332222111111 1223556555544444555556777777642 2233332 333455
Q ss_pred EEEEEeeCCe-EEEEccCCcEEEEe
Q 004094 600 SAVEILDDDI-YLGAENNFNLFTVR 623 (774)
Q Consensus 600 ~~~~~l~~~~-~l~~D~~gnl~~l~ 623 (774)
.++.|-.+.. +.++-+|+.|....
T Consensus 297 n~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 297 NAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred eEEEeCCCCchhhhccCCceEEeee
Confidence 5666655533 44566777766543
No 223
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=53.59 E-value=2.7e+02 Score=28.64 Aligned_cols=91 Identities=14% Similarity=0.175 Sum_probs=56.1
Q ss_pred eEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecC
Q 004094 430 HFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKG 509 (774)
Q Consensus 430 ~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g 509 (774)
..+++.|..|.++...|.|+. .+++-+.-... -++-.|++||-- -.+.++++..+.+...-+ -+++
T Consensus 124 htlKVWDtnTlQ~a~~F~me~--~VYshamSp~a-~sHcLiA~gtr~----------~~VrLCDi~SGs~sH~Ls-GHr~ 189 (397)
T KOG4283|consen 124 HTLKVWDTNTLQEAVDFKMEG--KVYSHAMSPMA-MSHCLIAAGTRD----------VQVRLCDIASGSFSHTLS-GHRD 189 (397)
T ss_pred ceEEEeecccceeeEEeecCc--eeehhhcChhh-hcceEEEEecCC----------CcEEEEeccCCcceeeec-cccC
Confidence 389999999999888888764 44432211111 135667777732 357788888776653321 3567
Q ss_pred ceeEeccc--cCeEEEEE--CCEEEEEEe
Q 004094 510 AVYSLNAF--NGKLLAAI--NQKIQLYKW 534 (774)
Q Consensus 510 ~v~~i~~~--~~~lv~~~--g~~l~v~~~ 534 (774)
.|.|+.=. .+++++.. ...+++|++
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDi 218 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDI 218 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEe
Confidence 78887643 45666543 357777664
No 224
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=53.25 E-value=3.3e+02 Score=31.39 Aligned_cols=107 Identities=15% Similarity=0.147 Sum_probs=58.3
Q ss_pred EEEEE-ECCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCC
Q 004094 177 VNVAT-ANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLN 255 (774)
Q Consensus 177 I~~a~-~~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~ 255 (774)
+...+ .++..++=+..++.+.+..++.+.+.+.. -...-+-|++.. .+.-++|.|-.|++++||+-. +
T Consensus 182 VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~--ghtn~vYsis~~-------~~~~~Ivs~gEDrtlriW~~~--e 250 (745)
T KOG0301|consen 182 VRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMH--GHTNFVYSISMA-------LSDGLIVSTGEDRTLRIWKKD--E 250 (745)
T ss_pred eeeeEEecCCCeEeecCCceEEEEeccCceeeeee--ccceEEEEEEec-------CCCCeEEEecCCceEEEeecC--c
Confidence 33444 33434444444567777776544444431 222224455421 134467777779999999977 3
Q ss_pred eeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEec
Q 004094 256 LITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 256 ~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 298 (774)
++..-.+|+. ..=++.+.. .--+++|..||.+.+|..+.
T Consensus 251 ~~q~I~lPtt-siWsa~~L~---NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 251 CVQVITLPTT-SIWSAKVLL---NGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eEEEEecCcc-ceEEEEEee---CCCEEEeccCceEEEEEecc
Confidence 3222234321 111222222 23489999999999998874
No 225
>PHA03098 kelch-like protein; Provisional
Probab=52.66 E-value=1.6e+02 Score=33.71 Aligned_cols=136 Identities=13% Similarity=0.133 Sum_probs=66.3
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEECC-------EEEEEEeeecCC
Q 004094 467 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQ-------KIQLYKWMLRDD 539 (774)
Q Consensus 467 ~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g~-------~l~v~~~~~~~~ 539 (774)
...+++|.... .......++.|+...++.+.+.....+-.-.+++.++++|++.-|. .+..|+ .. .
T Consensus 295 ~~lyv~GG~~~----~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd--~~-~ 367 (534)
T PHA03098 295 NVIYFIGGMNK----NNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWK--PG-E 367 (534)
T ss_pred CEEEEECCCcC----CCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEc--CC-C
Confidence 45667774321 1123356888888877776554332222233455567887665553 233333 22 2
Q ss_pred CchhhhhhcccccceEEEEEEEeCCEEEE-Eeccc----cEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEE
Q 004094 540 GTRELQSECGHHGHILALYVQTRGDFIVV-GDLMK----SISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYL 611 (774)
Q Consensus 540 ~~~~l~~~~~~~~~~~~~~l~~~~~~I~v-gD~~~----Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l 611 (774)
+ ++...+.+...-...+..+.++.|++ |-..+ .=.+.+|++..++-..++.-+.++...++...++..++
T Consensus 368 ~--~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv 442 (534)
T PHA03098 368 S--KWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYV 442 (534)
T ss_pred C--ceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEE
Confidence 2 23222222221122233456776665 32211 12356788877777766655555554444444433333
No 226
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.16 E-value=1.7e+02 Score=29.20 Aligned_cols=94 Identities=22% Similarity=0.340 Sum_probs=58.9
Q ss_pred cceEEEEEEEeCC-eEEEEEEE-eecCceeEeccc---cCeEEEEE--CCEEEEEEeeecCCCchhhhhhcccccce-EE
Q 004094 485 TKGRILVFIVEDG-KLQLIAEK-ETKGAVYSLNAF---NGKLLAAI--NQKIQLYKWMLRDDGTRELQSECGHHGHI-LA 556 (774)
Q Consensus 485 ~~Grl~v~~i~~~-kl~~~~~~-~~~g~v~~i~~~---~~~lv~~~--g~~l~v~~~~~~~~~~~~l~~~~~~~~~~-~~ 556 (774)
+-|.+.+|++.++ ..+++.+. -.+|||..+.=- -|.|++++ ..+|.+++.. +| ++.....+..+. ..
T Consensus 31 SD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~---~g--~w~k~~e~~~h~~SV 105 (299)
T KOG1332|consen 31 SDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE---NG--RWTKAYEHAAHSASV 105 (299)
T ss_pred CCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC---CC--chhhhhhhhhhcccc
Confidence 4489999999854 44665554 469999988744 35566554 5788887732 33 454444333332 22
Q ss_pred EEEEE----eCCEEEEEeccccEEEEEEEcc
Q 004094 557 LYVQT----RGDFIVVGDLMKSISLLIYKHE 583 (774)
Q Consensus 557 ~~l~~----~~~~I~vgD~~~Sv~~~~~~~~ 583 (774)
.++.. .|=.+++|-.-..|.++.|+.+
T Consensus 106 NsV~wapheygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 106 NSVAWAPHEYGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred eeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence 33333 2336667777788999999876
No 227
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=51.89 E-value=4.7e+02 Score=30.96 Aligned_cols=108 Identities=18% Similarity=0.255 Sum_probs=61.0
Q ss_pred CceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEEC-C--C--CCe--eEEecCCCccCceeEEeeeecCeeEEEEEeC
Q 004094 215 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL-P--D--LNL--ITKEHLGGEIIPRSVLLCAFEGISYLLCALG 287 (774)
Q Consensus 215 ~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l-~--~--~~~--~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~ 287 (774)
...++|.++++ .+.+++.|-- +|.|.+|+= . + ++. .+=+.- ...++.+. .+..+|+-|-+
T Consensus 205 tf~~t~~~~sp------n~~~~Aa~d~-dGrI~vw~d~~~~~~~~t~t~lHWH~~----~V~~L~fS--~~G~~LlSGG~ 271 (792)
T KOG1963|consen 205 TFNITCVALSP------NERYLAAGDS-DGRILVWRDFGSSDDSETCTLLHWHHD----EVNSLSFS--SDGAYLLSGGR 271 (792)
T ss_pred cccceeEEecc------ccceEEEecc-CCcEEEEeccccccccccceEEEeccc----ccceeEEe--cCCceEeeccc
Confidence 34478888865 3678887776 899999972 2 1 111 110000 01122221 25689999999
Q ss_pred CCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCeEEE
Q 004094 288 DGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIY 340 (774)
Q Consensus 288 ~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l~ 340 (774)
.|.|..|++.....++ --++|..-..+ .+..++....++++|+...+.
T Consensus 272 E~VLv~Wq~~T~~kqf----LPRLgs~I~~i-~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 272 EGVLVLWQLETGKKQF----LPRLGSPILHI-VVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred ceEEEEEeecCCCccc----ccccCCeeEEE-EEcCCCCeEEEEecCceEEEE
Confidence 9999999987632111 11354332222 223345566777787776554
No 228
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=51.82 E-value=4.2e+02 Score=30.35 Aligned_cols=110 Identities=11% Similarity=-0.004 Sum_probs=66.2
Q ss_pred EEEEEECCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCe
Q 004094 177 VNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNL 256 (774)
Q Consensus 177 I~~a~~~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~ 256 (774)
|++....++.++-......+..++..++.+....-.-....|.++++.. ....++-|.. |.++++|+..+.++
T Consensus 211 ~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~------~~~~lvsgS~-D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 211 VLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS------GGDKLVSGST-DKTERVWDCSTGEC 283 (537)
T ss_pred hhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec------CCCEEEEEec-CCcEEeEecCCCcE
Confidence 4444444455555544555644444444433332334456788888853 2566777776 99999999888777
Q ss_pred eEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEec
Q 004094 257 ITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 257 ~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 298 (774)
.+.... .+.++..+.. .+.++..|.+|-.+.+|++..
T Consensus 284 ~~~l~g----h~stv~~~~~-~~~~~~sgs~D~tVkVW~v~n 320 (537)
T KOG0274|consen 284 THSLQG----HTSSVRCLTI-DPFLLVSGSRDNTVKVWDVTN 320 (537)
T ss_pred EEEecC----CCceEEEEEc-cCceEeeccCCceEEEEeccC
Confidence 654332 2334433322 245566689999999998873
No 229
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=51.39 E-value=5.8e+02 Score=31.87 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=63.5
Q ss_pred EEEEEEcCCeEEEEEEcCceEEEEEec--cC-CceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecC
Q 004094 186 QVLLATGGGHLVYLEIGDGILTEVKHA--QL-EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHL 262 (774)
Q Consensus 186 ~lvv~~~~~~~~~~~~~~~~l~~~~~~--~l-~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l 262 (774)
.++.+...+.++++.+.. ....+.. ++ ..-||++++++ ..+++++|+. .|.+.+|++.=..++..-..
T Consensus 1165 ~lvy~T~~~~iv~~D~r~--~~~~w~lk~~~~hG~vTSi~idp------~~~WlviGts-~G~l~lWDLRF~~~i~sw~~ 1235 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRM--RHDAWRLKNQLRHGLVTSIVIDP------WCNWLVIGTS-RGQLVLWDLRFRVPILSWEH 1235 (1431)
T ss_pred eEEEEEeccceEEecchh--hhhHHhhhcCccccceeEEEecC------CceEEEEecC-CceEEEEEeecCceeecccC
Confidence 555556667787776432 1111111 22 24578888765 2569999998 89999999875455544344
Q ss_pred CCccCceeEEeeeecC--eeEEEEEe-CCCcEEEEEEec
Q 004094 263 GGEIIPRSVLLCAFEG--ISYLLCAL-GDGHLLNFLLNM 298 (774)
Q Consensus 263 ~~~~~p~si~~~~~~~--~~~L~vgl-~~G~l~~y~~~~ 298 (774)
|....++-+.+..+.. ...+..|. .++.|-.|++..
T Consensus 1236 P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1236 PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred cccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc
Confidence 4444566666666543 23345566 677777777654
No 230
>PF02978 SRP_SPB: Signal peptide binding domain; InterPro: IPR004125 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the M domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 2FFH_B 3NDB_B 2V3C_C 1QZW_G 1QZX_B 3KL4_A 2JQE_A 1HQ1_A 1RY1_W 1MFQ_C ....
Probab=51.31 E-value=24 Score=30.28 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcc
Q 004094 746 RTRMDEISKTMNVSVEELCKRVEELTRL 773 (774)
Q Consensus 746 ~~~q~~i~~~~~~~~~~i~~~l~~l~~~ 773 (774)
...+.+||++.|++++++.++|.+...+
T Consensus 73 ~sR~~RIA~GSG~~~~eV~~ll~~f~~~ 100 (104)
T PF02978_consen 73 ESRRRRIARGSGTTVQEVNELLKQFKQM 100 (104)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4889999999999999999999987754
No 231
>KOG3679 consensus Predicted coiled-coil protein [General function prediction only]
Probab=50.93 E-value=97 Score=32.35 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=48.8
Q ss_pred ecCCCCeEEE--EEEeCCcceEEEecCCCeEEEecCCcEEEeeecccCceeeecccCCCC--CCcEEEEeCCeEEEEE
Q 004094 310 SLGTQPITLR--TFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAF--PDSLAIAKEGELTIGT 383 (774)
Q Consensus 310 ~lG~~pv~l~--~~~~~~~~~v~~~~~~p~~l~~~~~~~~~~~~~~~~i~~~~~f~~~~~--~~~l~~~~~~~l~i~~ 383 (774)
.+|.+...+. .|+ ...+.||+.|+|.++...++|.++|..--.....++-|+.+..- -+.++-..++.|.|.+
T Consensus 195 nigeqaldicivsfn-qsassvfvlgernffclkdngqirfmkrldwspscflpycsvsegtintlignhnnmlhiyq 271 (802)
T KOG3679|consen 195 NIGEQALDICIVSFN-QSASSVFVLGERNFFCLKDNGQIRFMKRLDWSPSCFLPYCSVSEGTINTLIGNHNNMLHIYQ 271 (802)
T ss_pred ccChhhheEEEEEec-cccceEEEEeccceEEEccCCEEEEeeccCCCcccccccccccccchhhhhcCCCceEEeee
Confidence 4566654433 332 24578999999999999999888887654455667777765322 2355666677777776
No 232
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=49.95 E-value=1.9e+02 Score=34.43 Aligned_cols=145 Identities=12% Similarity=0.079 Sum_probs=79.0
Q ss_pred CceEEEEEecCceEEEEecCC-CCeeee-----eecCccccCcceeeeecCCCeEEEEecCcEEEEecCCCceeeeEeCC
Q 004094 99 FDTFLVVSFISETRILAMNLE-DELEET-----EIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSP 172 (774)
Q Consensus 99 ~~~~li~S~~~~T~vl~~~~~-~~~~e~-----~~~~f~~~~~Tl~~~~~~~~~~vQVT~~~i~l~~~~~~~~~~~~~~~ 172 (774)
++.++++.....|..++=... +.+... ..+.|+..+.+|.++....+..-=-....|.++|....+.+.-...|
T Consensus 186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~ 265 (1118)
T KOG1275|consen 186 NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP 265 (1118)
T ss_pred cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc
Confidence 357788888888877752221 111111 23678888888776655333333445666677766543333222233
Q ss_pred CCCcEEEEE-ECCCEEEEEEcCCeEEEEE---EcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEE
Q 004094 173 PGYSVNVAT-ANASQVLLATGGGHLVYLE---IGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRI 248 (774)
Q Consensus 173 ~~~~I~~a~-~~~~~lvv~~~~~~~~~~~---~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i 248 (774)
.|-.+..-. .-...++|+.+.|...+.+ +.+-.....--.+....++.+++++ ..+.+++|-. +|.|++
T Consensus 266 ~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs------n~~alafgd~-~g~v~~ 338 (1118)
T KOG1275|consen 266 YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS------NGDALAFGDH-EGHVNL 338 (1118)
T ss_pred cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC------CCceEEEecc-cCcEee
Confidence 332221111 1133566666667666654 2221111111123445588888865 3678899887 899999
Q ss_pred EE
Q 004094 249 FS 250 (774)
Q Consensus 249 ~~ 250 (774)
|.
T Consensus 339 wa 340 (1118)
T KOG1275|consen 339 WA 340 (1118)
T ss_pred ec
Confidence 98
No 233
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=49.90 E-value=3.5e+02 Score=28.85 Aligned_cols=47 Identities=9% Similarity=0.104 Sum_probs=30.5
Q ss_pred EEccCCeEEEEeccCCc------ceeEEEEEeeCCeEEEEccCCcEEEEeeCC
Q 004094 580 YKHEEGAIEERARDYNA------NWMSAVEILDDDIYLGAENNFNLFTVRKNS 626 (774)
Q Consensus 580 ~~~~~~~l~~~a~D~~~------~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~ 626 (774)
|+.-..++-++-.|..+ .-+.+|+|+++-.++.+-.+-||++.+++-
T Consensus 271 ~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 271 FDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred eeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCC
Confidence 44444444444445333 344578899887788777788999999864
No 234
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=49.65 E-value=47 Score=35.38 Aligned_cols=142 Identities=15% Similarity=0.215 Sum_probs=78.4
Q ss_pred eEEEEecCcEEEEecCCCceeeeEeC----------CCCCcEEEEEE--CCCEEEEEEcCCeEEEEEEcCceEEEEEecc
Q 004094 146 QLVQVTSGSVRLVSSTSRELRNEWKS----------PPGYSVNVATA--NASQVLLATGGGHLVYLEIGDGILTEVKHAQ 213 (774)
Q Consensus 146 ~~vQVT~~~i~l~~~~~~~~~~~~~~----------~~~~~I~~a~~--~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~ 213 (774)
..|+=||.+=|++.....-...-|.. ..+..|.+... ++.+++-+..++.+.|++..-... ++....
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~~~ah 178 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-KIIQAH 178 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-HHhhHh
Confidence 57888898888887654334455532 12344555553 355777666677888876321111 111123
Q ss_pred CCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECC--CCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcE
Q 004094 214 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP--DLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHL 291 (774)
Q Consensus 214 l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~--~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l 291 (774)
.+..|.|++|++ .+-.++++..||+|+||+.- ..+.+.. +-..-++++.=.+ .+-.++.|.+|. +
T Consensus 179 h~eaIRdlafSp-------nDskF~t~SdDg~ikiWdf~~~kee~vL~---GHgwdVksvdWHP--~kgLiasgskDn-l 245 (464)
T KOG0284|consen 179 HAEAIRDLAFSP-------NDSKFLTCSDDGTIKIWDFRMPKEERVLR---GHGWDVKSVDWHP--TKGLIASGSKDN-L 245 (464)
T ss_pred hhhhhheeccCC-------CCceeEEecCCCeEEEEeccCCchhheec---cCCCCcceeccCC--ccceeEEccCCc-e
Confidence 346789999976 22245567769999999963 2222211 0012344442221 234566777776 3
Q ss_pred EEEEEecCCCc
Q 004094 292 LNFLLNMKTGE 302 (774)
Q Consensus 292 ~~y~~~~~~~~ 302 (774)
+.+ +|+.+|+
T Consensus 246 VKl-WDprSg~ 255 (464)
T KOG0284|consen 246 VKL-WDPRSGS 255 (464)
T ss_pred eEe-ecCCCcc
Confidence 333 6776653
No 235
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=49.18 E-value=2.9e+02 Score=28.48 Aligned_cols=101 Identities=15% Similarity=0.086 Sum_probs=55.3
Q ss_pred EEEEEEcCCeEEEEEEcC----ceEEEEEeccCCc-eeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEe
Q 004094 186 QVLLATGGGHLVYLEIGD----GILTEVKHAQLEY-EISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKE 260 (774)
Q Consensus 186 ~lvv~~~~~~~~~~~~~~----~~l~~~~~~~l~~-~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~ 260 (774)
.++.+...+.+.+++.+. ..|.++..+.+.. +..|+++.+. +.-++++.. +|.+.+.+.....+...+
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~------~~~i~vs~s-~G~~~~v~~t~~~le~vq 159 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTS------GTKIFVSDS-RGSISGVYETEMVLEKVQ 159 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeecc------CceEEEEcC-CCcEEEEecceeeeeecc
Confidence 444455567777777653 2344444333332 3556677653 344777777 888886554432221111
Q ss_pred cCCCccCceeEEe--eeec--CeeEEEEEeCCCcEEEEEEe
Q 004094 261 HLGGEIIPRSVLL--CAFE--GISYLLCALGDGHLLNFLLN 297 (774)
Q Consensus 261 ~l~~~~~p~si~~--~~~~--~~~~L~vgl~~G~l~~y~~~ 297 (774)
.. .++.... ..++ ..+.++-|..||.+..|.+.
T Consensus 160 ~w----k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 160 TW----KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred cc----cccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence 11 2232221 1222 23567889999999999887
No 236
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=49.14 E-value=3.5e+02 Score=28.70 Aligned_cols=163 Identities=16% Similarity=0.206 Sum_probs=84.1
Q ss_pred CCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEE-EeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEE
Q 004094 243 DISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLC-ALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTF 321 (774)
Q Consensus 243 ~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~v-gl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~ 321 (774)
.-.|.||+..-..++.......+.+ .++.+.+. .+.++. +-.|+.++.|.+...+ ..+++.++.++=.+. .
T Consensus 166 Ge~i~IWD~~R~~Pv~smswG~Dti-~svkfNpv--ETsILas~~sDrsIvLyD~R~~~----Pl~KVi~~mRTN~Is-w 237 (433)
T KOG0268|consen 166 GEQIDIWDEQRDNPVSSMSWGADSI-SSVKFNPV--ETSILASCASDRSIVLYDLRQAS----PLKKVILTMRTNTIC-W 237 (433)
T ss_pred CceeeecccccCCccceeecCCCce-eEEecCCC--cchheeeeccCCceEEEecccCC----ccceeeeecccccee-c
Confidence 3468999886555555444443211 23333322 233444 4479999999876532 223444444432221 1
Q ss_pred EeCCcceEEEecCCCeEEEecCCcEEEeeec--ccCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCCCC---eEEEEE
Q 004094 322 SSKNTTHVFAASDRPTVIYSSNKKLLYSNVN--LKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQK---LHIRSI 395 (774)
Q Consensus 322 ~~~~~~~v~~~~~~p~~l~~~~~~~~~~~~~--~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~---~~~~~i 395 (774)
+.+...|+.++.-+=+|..+-|.--.|+. .+.+.++....-.....=|+-.+ +..++|.......+ ++.|+.
T Consensus 238 --nPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRM 315 (433)
T KOG0268|consen 238 --NPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRM 315 (433)
T ss_pred --CccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhh
Confidence 12456788887777777655442223433 24444444332211122244333 67888888876642 444443
Q ss_pred eCCCcccEEEEecCCCEEEEEEec
Q 004094 396 PLGEHPRRICHQEQSRTFAICSLK 419 (774)
Q Consensus 396 ~l~~tp~~i~y~~~~~~~~v~~~~ 419 (774)
. .+-.+.|+.+++ |++..++
T Consensus 316 q---~V~~Vk~S~Dsk-yi~SGSd 335 (433)
T KOG0268|consen 316 Q---HVFCVKYSMDSK-YIISGSD 335 (433)
T ss_pred h---eeeEEEEecccc-EEEecCC
Confidence 2 345577877655 5555444
No 237
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=48.74 E-value=55 Score=38.24 Aligned_cols=62 Identities=13% Similarity=0.233 Sum_probs=48.1
Q ss_pred CCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCC-------eEEEEccCCcEEEEee
Q 004094 563 GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD-------IYLGAENNFNLFTVRK 624 (774)
Q Consensus 563 ~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~-------~~l~~D~~gnl~~l~~ 624 (774)
-++|+|++=..+|+++.|...+.+............+-++.|++++ .++++|..|+++++++
T Consensus 177 ~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 177 SRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 4689999999999999998765544443333456777889999764 3568999999999988
No 238
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=48.05 E-value=1.6e+02 Score=32.53 Aligned_cols=101 Identities=10% Similarity=0.077 Sum_probs=58.3
Q ss_pred CCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecC
Q 004094 183 NASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHL 262 (774)
Q Consensus 183 ~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l 262 (774)
++++++|...++.+-.++....+-.++ ...+.-|-++.|... ..+ +|.+-+|+-+..|+.|-..-++...-
T Consensus 603 ~~dWlavGMens~vevlh~skp~kyql--hlheScVLSlKFa~c------Gkw-fvStGkDnlLnawrtPyGasiFqskE 673 (705)
T KOG0639|consen 603 TGDWLAVGMENSNVEVLHTSKPEKYQL--HLHESCVLSLKFAYC------GKW-FVSTGKDNLLNAWRTPYGASIFQSKE 673 (705)
T ss_pred CccceeeecccCcEEEEecCCccceee--cccccEEEEEEeccc------Cce-eeecCchhhhhhccCccccceeeccc
Confidence 477999999887776666543111111 122344556667542 233 45666688899999887665553222
Q ss_pred CCccCceeEEeeeecCeeEEEEEeCCCcEEEEEE
Q 004094 263 GGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLL 296 (774)
Q Consensus 263 ~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~ 296 (774)
...+...+|.. +..|++-|.+|-.-.+|++
T Consensus 674 ~SsVlsCDIS~----ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 SSSVLSCDISF----DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCcceeeeecc----CceEEEecCCCcceEEEEE
Confidence 21122233321 3456777888888888875
No 239
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=47.48 E-value=3.2e+02 Score=27.71 Aligned_cols=191 Identities=19% Similarity=0.266 Sum_probs=84.6
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEE
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLL 292 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~ 292 (774)
.+..++|.|+..+- ...+++.....+.|..+++. .+++....+....=++.+.++ ++..+++..=+++.|+
T Consensus 19 g~~~e~SGLTy~pd------~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~--g~~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 19 GILDELSGLTYNPD------TGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYL--GNGRYVLSEERDQRLY 89 (248)
T ss_dssp T--S-EEEEEEETT------TTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE---STTEEEEEETTTTEEE
T ss_pred CccCCccccEEcCC------CCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEE--CCCEEEEEEcCCCcEE
Confidence 44568999998652 23344444547888888864 455555556543457777654 4455566565789999
Q ss_pred EEEEecCCCccccc--eeeecCCCCe---EE--EEEEeCCcceEEEe-cCCCeEEEecCC---c--EEEee---ec----
Q 004094 293 NFLLNMKTGELTDR--KKVSLGTQPI---TL--RTFSSKNTTHVFAA-SDRPTVIYSSNK---K--LLYSN---VN---- 352 (774)
Q Consensus 293 ~y~~~~~~~~l~~~--~~~~lG~~pv---~l--~~~~~~~~~~v~~~-~~~p~~l~~~~~---~--~~~~~---~~---- 352 (774)
.++++..+..+... +...+|.... -+ ...+. ..+..|+. -..|..+|..++ . +.... +.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 99997644333222 2233432210 01 11121 22344444 455666654432 1 21111 00
Q ss_pred -ccCceeeecccCCCCCCcEEEEeCCeEEEEEEcCCCCeEEEEEeCCC----------cccEEEEecCCCEEEEEE
Q 004094 353 -LKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE----------HPRRICHQEQSRTFAICS 417 (774)
Q Consensus 353 -~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~----------tp~~i~y~~~~~~~~v~~ 417 (774)
...+++++ |+ +. .+.+++.++..=++..++...+ ..+..+|.. .|.-|+++++.+.|+|..
T Consensus 169 ~~~d~S~l~-~~-p~-t~~lliLS~es~~l~~~d~~G~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 169 FVRDLSGLS-YD-PR-TGHLLILSDESRLLLELDRQGR-VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp -SS---EEE-EE-TT-TTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred eeccccceE-Ec-CC-CCeEEEEECCCCeEEEECCCCC-EEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence 01122222 22 11 2334444443334455564332 445556654 688999999998888763
No 240
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=47.12 E-value=3.4e+02 Score=27.95 Aligned_cols=182 Identities=15% Similarity=0.168 Sum_probs=94.5
Q ss_pred ceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCC--Ce---eEEecCCCccCceeEEeeeecCeeEEEEEeCCCc
Q 004094 216 YEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDL--NL---ITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGH 290 (774)
Q Consensus 216 ~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~--~~---~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~ 290 (774)
..|-..+++|. +++++.|-- |+...||++..- +- +.. .++.- ..=+.-.++-+..+|+-|++|..
T Consensus 98 ~WVMtCA~sPS------g~~VAcGGL-dN~Csiy~ls~~d~~g~~~v~r-~l~gH--tgylScC~f~dD~~ilT~SGD~T 167 (343)
T KOG0286|consen 98 SWVMTCAYSPS------GNFVACGGL-DNKCSIYPLSTRDAEGNVRVSR-ELAGH--TGYLSCCRFLDDNHILTGSGDMT 167 (343)
T ss_pred eeEEEEEECCC------CCeEEecCc-CceeEEEecccccccccceeee-eecCc--cceeEEEEEcCCCceEecCCCce
Confidence 56767788763 577887777 889999998631 21 111 12210 00111223445678899999988
Q ss_pred EEEEEEecCCCccccceeeecCCCCeEEEEEEeCC-cceEEEec--CCCeEEEecC-C-cEEEeeecccCceeeecccCC
Q 004094 291 LLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKN-TTHVFAAS--DRPTVIYSSN-K-KLLYSNVNLKEVSHMCPFNSA 365 (774)
Q Consensus 291 l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~-~~~v~~~~--~~p~~l~~~~-~-~~~~~~~~~~~i~~~~~f~~~ 365 (774)
...|.+.. |... ..+-|-.- -+..+...+ ....|+.| |....++..+ + ..+-.+-+..+|.+++=|
T Consensus 168 CalWDie~--g~~~---~~f~GH~g-DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ff--- 238 (343)
T KOG0286|consen 168 CALWDIET--GQQT---QVFHGHTG-DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFF--- 238 (343)
T ss_pred EEEEEccc--ceEE---EEecCCcc-cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEc---
Confidence 88877654 3211 11112111 011111111 23456554 5555555433 2 234445555666666644
Q ss_pred CCCCcEEEEe---CCeEEEEEEcCCCCeEEE-EEeCCCcccEEEEecCCCEEEEEEe
Q 004094 366 AFPDSLAIAK---EGELTIGTIDDIQKLHIR-SIPLGEHPRRICHQEQSRTFAICSL 418 (774)
Q Consensus 366 ~~~~~l~~~~---~~~l~i~~l~~~~~~~~~-~i~l~~tp~~i~y~~~~~~~~v~~~ 418 (774)
|++..|++ ++..++..|-..+.+-+- +=+.......++|+...+++.....
T Consensus 239 --P~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~ 293 (343)
T KOG0286|consen 239 --PSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYD 293 (343)
T ss_pred --cCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeec
Confidence 55656655 455666666555443222 2233344567888877766555543
No 241
>PHA02790 Kelch-like protein; Provisional
Probab=46.83 E-value=2.9e+02 Score=31.11 Aligned_cols=137 Identities=14% Similarity=0.104 Sum_probs=68.0
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEECC----EEEEEEeeecCCCch
Q 004094 467 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQ----KIQLYKWMLRDDGTR 542 (774)
Q Consensus 467 ~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g~----~l~v~~~~~~~~~~~ 542 (774)
..++++|.... .. ..-.+..|+...++...+.....+-.-.+.+.++|+|++.-|. .+.. |+... +
T Consensus 272 ~~lyviGG~~~----~~-~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~--ydp~~-n-- 341 (480)
T PHA02790 272 EVVYLIGGWMN----NE-IHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVER--WFHGD-A-- 341 (480)
T ss_pred CEEEEEcCCCC----CC-cCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEE--EECCC-C--
Confidence 45677775321 11 1123556766666666555433322224455567887665552 3433 33221 1
Q ss_pred hhhhhcccccceEEEEEEEeCCEEEE-Eecccc-EEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEE
Q 004094 543 ELQSECGHHGHILALYVQTRGDFIVV-GDLMKS-ISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGA 613 (774)
Q Consensus 543 ~l~~~~~~~~~~~~~~l~~~~~~I~v-gD~~~S-v~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~ 613 (774)
++...+.+...-......+.+++|+| |-...+ -.+..|+++.++-..++.-+.++.-.++..+++.-++++
T Consensus 342 ~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G 414 (480)
T PHA02790 342 AWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG 414 (480)
T ss_pred eEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC
Confidence 23333333222222334567787776 332221 234568888888777776666665555545543334433
No 242
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=45.07 E-value=3.5e+02 Score=27.51 Aligned_cols=221 Identities=13% Similarity=0.097 Sum_probs=110.1
Q ss_pred cceEEEecC--CCeEEEecCC-cEEEeeecccCceeeecccCCCCCCcEE-EEeCCeEEEEEEcCCCCeEEEEEeCCCcc
Q 004094 326 TTHVFAASD--RPTVIYSSNK-KLLYSNVNLKEVSHMCPFNSAAFPDSLA-IAKEGELTIGTIDDIQKLHIRSIPLGEHP 401 (774)
Q Consensus 326 ~~~v~~~~~--~p~~l~~~~~-~~~~~~~~~~~i~~~~~f~~~~~~~~l~-~~~~~~l~i~~l~~~~~~~~~~i~l~~tp 401 (774)
+.-+|-|+. .|.+.|+.+| |+-...-+.+.|.++. ++ ...+.++ -+.++.+++..+++.+. .-+.+.+..+
T Consensus 22 GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~D-id--~~s~~liTGSAD~t~kLWDv~tGk~--la~~k~~~~V 96 (327)
T KOG0643|consen 22 GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCD-ID--WDSKHLITGSADQTAKLWDVETGKQ--LATWKTNSPV 96 (327)
T ss_pred CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEE-ec--CCcceeeeccccceeEEEEcCCCcE--EEEeecCCee
Confidence 456777764 3455566443 3421111123343332 11 1112222 23467788888887554 3455666778
Q ss_pred cEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCce-EEE----EEECCCC-ceEEEEEEEEEcCCCceEEEEEee
Q 004094 402 RRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFE-FIS----TYPLDTF-EYGCSILSCSFSDDSNVYYCVGTA 475 (774)
Q Consensus 402 ~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~-~i~----~~~~~~~-E~~~si~~~~~~~~~~~~i~VGT~ 475 (774)
+++-|+...+.+++.+.+.- ...+.|-++|-..-. .++ .+.++.. ..++++ .|- ...++|+-|-
T Consensus 97 k~~~F~~~gn~~l~~tD~~m-----g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a-~Wg---~l~~~ii~Gh- 166 (327)
T KOG0643|consen 97 KRVDFSFGGNLILASTDKQM-----GYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSA-LWG---PLGETIIAGH- 166 (327)
T ss_pred EEEeeccCCcEEEEEehhhc-----CcceEEEEEEccCChhhhcccCceEEecCCccceeee-eec---ccCCEEEEec-
Confidence 88889887776655553320 123456666543111 110 1122222 233332 231 1256777664
Q ss_pred eeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCe--EEE-EECCEEEEEEeeecCCCchhhhhhccccc
Q 004094 476 YVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK--LLA-AINQKIQLYKWMLRDDGTRELQSECGHHG 552 (774)
Q Consensus 476 ~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~--lv~-~~g~~l~v~~~~~~~~~~~~l~~~~~~~~ 552 (774)
..|.|-.|++.+++.-+-...++...+..++...++ .+- +-.++-.+++... .++++.-....
T Consensus 167 ---------e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t-----l~v~Kty~te~ 232 (327)
T KOG0643|consen 167 ---------EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT-----LEVLKTYTTER 232 (327)
T ss_pred ---------CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc-----eeeEEEeeecc
Confidence 459999999987765555556677788888887654 222 2234445544321 11211111111
Q ss_pred ceEEEEEEEeCCEEEEEeccccE
Q 004094 553 HILALYVQTRGDFIVVGDLMKSI 575 (774)
Q Consensus 553 ~~~~~~l~~~~~~I~vgD~~~Sv 575 (774)
++....+.-..|.|++|-=++..
T Consensus 233 PvN~aaisP~~d~VilgGGqeA~ 255 (327)
T KOG0643|consen 233 PVNTAAISPLLDHVILGGGQEAM 255 (327)
T ss_pred cccceecccccceEEecCCceee
Confidence 22233445556777776544443
No 243
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.13 E-value=78 Score=31.43 Aligned_cols=38 Identities=13% Similarity=0.037 Sum_probs=27.0
Q ss_pred ccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeE
Q 004094 212 AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLIT 258 (774)
Q Consensus 212 ~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~ 258 (774)
..+++.++.+... ..++++-+- +|.+++|+++..+.+.
T Consensus 9 i~Lgs~~~~l~~~--------~~~Ll~iT~-~G~l~vWnl~~~k~~~ 46 (219)
T PF07569_consen 9 IVLGSPVSFLECN--------GSYLLAITS-SGLLYVWNLKKGKAVL 46 (219)
T ss_pred EecCCceEEEEeC--------CCEEEEEeC-CCeEEEEECCCCeecc
Confidence 4566777776542 466666666 9999999999866643
No 244
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=42.65 E-value=31 Score=27.96 Aligned_cols=26 Identities=12% Similarity=0.346 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhc
Q 004094 747 TRMDEISKTMNVSVEELCKRVEELTR 772 (774)
Q Consensus 747 ~~q~~i~~~~~~~~~~i~~~l~~l~~ 772 (774)
--.++|++.+|.++..|++.|+.|+.
T Consensus 20 ~SGe~La~~LgiSRtaVwK~Iq~Lr~ 45 (79)
T COG1654 20 VSGEKLAEELGISRTAVWKHIQQLRE 45 (79)
T ss_pred ccHHHHHHHHCccHHHHHHHHHHHHH
Confidence 45678999999999999999999984
No 245
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=42.40 E-value=4.3e+02 Score=30.61 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=37.6
Q ss_pred cceEEEEEecCCEEEEEECCCC--CeeEE-e--cCCCccCceeEEeeee-cCeeEEEEEeCCCcEEEEEEe
Q 004094 233 SQIAAVGMWTDISVRIFSLPDL--NLITK-E--HLGGEIIPRSVLLCAF-EGISYLLCALGDGHLLNFLLN 297 (774)
Q Consensus 233 ~~~~~vg~~~~~~i~i~~l~~~--~~~~~-~--~l~~~~~p~si~~~~~-~~~~~L~vgl~~G~l~~y~~~ 297 (774)
+.+ ++...+|..+.+|..++. ..+.. . +++..+.+.+.+-... +....+-+|+..|.++.|+.+
T Consensus 630 e~~-FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 630 EKY-FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred cce-eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 344 445556999999999886 33322 1 1221223333322211 223356789999999999976
No 246
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=42.35 E-value=2.3e+02 Score=32.56 Aligned_cols=112 Identities=15% Similarity=0.214 Sum_probs=62.4
Q ss_pred ecCceeEeccccC-eEEEEEC-CEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEeccccEEEEEEEccC
Q 004094 507 TKGAVYSLNAFNG-KLLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEE 584 (774)
Q Consensus 507 ~~g~v~~i~~~~~-~lv~~~g-~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~ 584 (774)
+...|.+++.+.+ .++.|.+ .-|+.+.. +| ..|.+.-.+..++|.++. ..++.++|..--++- +-.|+.+
T Consensus 178 HtD~VRgL~vl~~~~flScsNDg~Ir~w~~----~g-e~l~~~~ghtn~vYsis~-~~~~~~Ivs~gEDrt-lriW~~~- 249 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDSHFLSCSNDGSIRLWDL----DG-EVLLEMHGHTNFVYSISM-ALSDGLIVSTGEDRT-LRIWKKD- 249 (745)
T ss_pred chhheeeeEEecCCCeEeecCCceEEEEec----cC-ceeeeeeccceEEEEEEe-cCCCCeEEEecCCce-EEEeecC-
Confidence 5778899998876 5555544 34555443 22 233333333334455442 344455555554442 2224443
Q ss_pred CeEEEEeccCCcc-eeEEEEEeeCCeEEEEccCCcEEEEeeCCCCC
Q 004094 585 GAIEERARDYNAN-WMSAVEILDDDIYLGAENNFNLFTVRKNSEGA 629 (774)
Q Consensus 585 ~~l~~~a~D~~~~-~v~~~~~l~~~~~l~~D~~gnl~~l~~~~~~~ 629 (774)
.....+ ..|- .+-++.++..+.++++-+||-+++|..+++..
T Consensus 250 e~~q~I---~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 250 ECVQVI---TLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred ceEEEE---ecCccceEEEEEeeCCCEEEeccCceEEEEEeccccc
Confidence 111111 1222 44478889888888888999999999876543
No 247
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=41.98 E-value=1e+02 Score=20.64 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=27.7
Q ss_pred cceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEe
Q 004094 233 SQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLL 273 (774)
Q Consensus 233 ~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~ 273 (774)
...+.++.|.+++|.+++..+.+.+.....+ ..|+.+++
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg--~~P~~i~~ 41 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVG--GYPFGVAV 41 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEECC--CCCceEEe
Confidence 4568888998899999998777766554443 35666543
No 248
>PHA02790 Kelch-like protein; Provisional
Probab=41.40 E-value=5.6e+02 Score=28.82 Aligned_cols=129 Identities=9% Similarity=0.010 Sum_probs=65.8
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEEC-----CEEEEEEeeecCCCc
Q 004094 467 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN-----QKIQLYKWMLRDDGT 541 (774)
Q Consensus 467 ~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g-----~~l~v~~~~~~~~~~ 541 (774)
...+++|.... ...+..|+...++...+.....+-.-.+.+.++|+|++.-| +.+..|+ .. .+.
T Consensus 319 ~~iYviGG~~~--------~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~yd--p~-~~~ 387 (480)
T PHA02790 319 NKLYVVGGLPN--------PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLL--PN-HDQ 387 (480)
T ss_pred CEEEEECCcCC--------CCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEe--CC-CCE
Confidence 46677775311 02355566555666655433221112245556787766544 2344443 22 222
Q ss_pred hhhhhhcccccceEEEEEEEeCCEEEE-EeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEE
Q 004094 542 RELQSECGHHGHILALYVQTRGDFIVV-GDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGA 613 (774)
Q Consensus 542 ~~l~~~~~~~~~~~~~~l~~~~~~I~v-gD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~ 613 (774)
+.. .+.+...-...+..+.+++|+| |- . .-.|+++.++=..++.-+.+|.-.++..+++.-++++
T Consensus 388 W~~--~~~m~~~r~~~~~~~~~~~IYv~GG---~--~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviG 453 (480)
T PHA02790 388 WQF--GPSTYYPHYKSCALVFGRRLFLVGR---N--AEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIG 453 (480)
T ss_pred EEe--CCCCCCccccceEEEECCEEEEECC---c--eEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEEC
Confidence 322 2222222122344567887776 42 2 2357887788777776566676666666665445543
No 249
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=41.38 E-value=1.4e+02 Score=34.39 Aligned_cols=111 Identities=12% Similarity=0.101 Sum_probs=64.6
Q ss_pred eEeccccCeEEEEEC-CEEEEEEeeecCCCchhhhhhccc-ccceEEEEEEEeCCEEEEEeccccEEEEEEEcc-CCeEE
Q 004094 512 YSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSECGH-HGHILALYVQTRGDFIVVGDLMKSISLLIYKHE-EGAIE 588 (774)
Q Consensus 512 ~~i~~~~~~lv~~~g-~~l~v~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~-~~~l~ 588 (774)
+++..-..+|.+|.. +.+|+|.- .+.+-+...... .+...+.+++....++++|...--|.++..+.. +..+.
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R----~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNR----HTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred EEeecCCceEEEecccceEEEEec----CchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 344444566766555 56787763 121112112222 223345556666667777888777877766653 34454
Q ss_pred EEec-cC-CcceeEEEEEeeCC-eEEEEccCCcEEEEeeCC
Q 004094 589 ERAR-DY-NANWMSAVEILDDD-IYLGAENNFNLFTVRKNS 626 (774)
Q Consensus 589 ~~a~-D~-~~~~v~~~~~l~~~-~~l~~D~~gnl~~l~~~~ 626 (774)
.+.. |. +++.|||++---+. .+..+|..|-+..-+.+.
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 4443 32 47788877643333 477899999998888765
No 250
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=39.43 E-value=4.7e+02 Score=27.38 Aligned_cols=201 Identities=15% Similarity=0.219 Sum_probs=88.1
Q ss_pred CCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEEC-CCceEEEEEECCCCceEEEEEEEEEcCCC
Q 004094 388 QKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDD-QTFEFISTYPLDTFEYGCSILSCSFSDDS 466 (774)
Q Consensus 388 ~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~-~~~~~i~~~~~~~~E~~~si~~~~~~~~~ 466 (774)
.+|...++|....+..|.|..+..-++|..... -++=-|. ++|+.... ..+ ++.-..+..+.+..
T Consensus 6 ~~W~~v~l~t~~~l~dV~F~d~~~G~~VG~~g~----------il~T~DGG~tW~~~~~-~~~-~~~~~~l~~I~f~~-- 71 (302)
T PF14870_consen 6 NSWQQVSLPTDKPLLDVAFVDPNHGWAVGAYGT----------ILKTTDGGKTWQPVSL-DLD-NPFDYHLNSISFDG-- 71 (302)
T ss_dssp --EEEEE-S-SS-EEEEEESSSS-EEEEETTTE----------EEEESSTTSS-EE------S------EEEEEEEET--
T ss_pred CCcEEeecCCCCceEEEEEecCCEEEEEecCCE----------EEEECCCCcccccccc-CCC-ccceeeEEEEEecC--
Confidence 468888899999999999998888888764321 1222233 56776542 111 12112233344543
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeC--CeEEEEE-EEeecCceeEeccccC-eEE-EEECCEEEEEEeeecCCCc
Q 004094 467 NVYYCVGTAYVLPEENEPTKGRILVFIVED--GKLQLIA-EKETKGAVYSLNAFNG-KLL-AAINQKIQLYKWMLRDDGT 541 (774)
Q Consensus 467 ~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~--~kl~~~~-~~~~~g~v~~i~~~~~-~lv-~~~g~~l~v~~~~~~~~~~ 541 (774)
.+-++||.. | ++|...+ ...+.+. ....+|.++.+..+++ ..+ ++....|+ + - .++.
T Consensus 72 ~~g~ivG~~-----------g--~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy--~--T-~DgG 133 (302)
T PF14870_consen 72 NEGWIVGEP-----------G--LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIY--R--T-TDGG 133 (302)
T ss_dssp TEEEEEEET-----------T--EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EE--E--E-SSTT
T ss_pred CceEEEcCC-----------c--eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEE--E--e-CCCC
Confidence 455677752 2 2444443 2455554 3356787777777744 333 33333443 3 1 2343
Q ss_pred hhhhhhc-ccccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccCCcEE
Q 004094 542 RELQSEC-GHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLF 620 (774)
Q Consensus 542 ~~l~~~~-~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~gnl~ 620 (774)
+.+.... .....+....-...|.+++|+ .++-.+..+++....-.+..|.. ++.+.++.|-.++.+....+.|.++
T Consensus 134 ~tW~~~~~~~~gs~~~~~r~~dG~~vavs--~~G~~~~s~~~G~~~w~~~~r~~-~~riq~~gf~~~~~lw~~~~Gg~~~ 210 (302)
T PF14870_consen 134 KTWQAVVSETSGSINDITRSSDGRYVAVS--SRGNFYSSWDPGQTTWQPHNRNS-SRRIQSMGFSPDGNLWMLARGGQIQ 210 (302)
T ss_dssp SSEEEEE-S----EEEEEE-TTS-EEEEE--TTSSEEEEE-TT-SS-EEEE--S-SS-EEEEEE-TTS-EEEEETTTEEE
T ss_pred CCeeEcccCCcceeEeEEECCCCcEEEEE--CcccEEEEecCCCccceEEccCc-cceehhceecCCCCEEEEeCCcEEE
Confidence 4443221 111112222112234566665 55554556666555567776663 4777788887666665555777766
Q ss_pred EEe
Q 004094 621 TVR 623 (774)
Q Consensus 621 ~l~ 623 (774)
.-.
T Consensus 211 ~s~ 213 (302)
T PF14870_consen 211 FSD 213 (302)
T ss_dssp EEE
T ss_pred Ecc
Confidence 655
No 251
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=38.77 E-value=6.2e+02 Score=28.55 Aligned_cols=62 Identities=15% Similarity=0.046 Sum_probs=35.6
Q ss_pred eeEEEEEECCCceEEEEEECCCCce-----EEEEEEEEE---cCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEE
Q 004094 429 MHFVRLLDDQTFEFISTYPLDTFEY-----GCSILSCSF---SDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQ 500 (774)
Q Consensus 429 ~~~l~l~d~~~~~~i~~~~~~~~E~-----~~si~~~~~---~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~ 500 (774)
.+.|-=+|.++.+.+-+++..+... ......... ..+...++++|+ ..|+++.++..++++.
T Consensus 255 ~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~----------~~G~l~ald~~tG~~~ 324 (488)
T cd00216 255 TDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAP----------KNGFFYVLDRTTGKLI 324 (488)
T ss_pred eeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEEC----------CCceEEEEECCCCcEe
Confidence 3466667888888887777654321 111111111 111234666776 4599999999877543
No 252
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=37.64 E-value=6.5e+02 Score=28.44 Aligned_cols=106 Identities=11% Similarity=0.148 Sum_probs=67.1
Q ss_pred CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEE-EeecCceeEecccc-CeEEEEECCEEEEEEeeecCCCchh
Q 004094 466 SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAE-KETKGAVYSLNAFN-GKLLAAINQKIQLYKWMLRDDGTRE 543 (774)
Q Consensus 466 ~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~-~~~~g~v~~i~~~~-~~lv~~~g~~l~v~~~~~~~~~~~~ 543 (774)
+..+++.|| .+|.+.+|.+..++++-... -.+.|+|.++..-+ -..+.++|...++-.|.+++ ++
T Consensus 69 ~t~~lvlgt----------~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~---~~ 135 (541)
T KOG4547|consen 69 DTSMLVLGT----------PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE---KV 135 (541)
T ss_pred CceEEEeec----------CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc---ce
Confidence 468899999 45999999999888876555 45789999988553 34778888877777776542 22
Q ss_pred hhhhccccc-ceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEE
Q 004094 544 LQSECGHHG-HILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIE 588 (774)
Q Consensus 544 l~~~~~~~~-~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~ 588 (774)
+. |.+.. ...+.++....+-=+.+.+.+.+.+ |+.+..++.
T Consensus 136 ~~--~~~~~~~~~~~sl~is~D~~~l~~as~~ik~--~~~~~kevv 177 (541)
T KOG4547|consen 136 II--RIWKEQKPLVSSLCISPDGKILLTASRQIKV--LDIETKEVV 177 (541)
T ss_pred ee--eeeccCCCccceEEEcCCCCEEEeccceEEE--EEccCceEE
Confidence 32 33322 2334555554442234556667665 455554443
No 253
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.47 E-value=1.9e+02 Score=35.24 Aligned_cols=79 Identities=19% Similarity=0.232 Sum_probs=53.6
Q ss_pred ccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecC-eeEEE-EEeCCC
Q 004094 212 AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEG-ISYLL-CALGDG 289 (774)
Q Consensus 212 ~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~-~~~L~-vgl~~G 289 (774)
..+...|..++|.+.+ .+.++-|-. +|.|.||++.+++.-+. .++...|..|..+..+. ..++| -|..+|
T Consensus 113 ~~h~G~V~gLDfN~~q-----~nlLASGa~-~geI~iWDlnn~~tP~~--~~~~~~~~eI~~lsWNrkvqhILAS~s~sg 184 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQ-----GNLLASGAD-DGEILIWDLNKPETPFT--PGSQAPPSEIKCLSWNRKVSHILASGSPSG 184 (1049)
T ss_pred cccCCceeeeeccccC-----CceeeccCC-CCcEEEeccCCcCCCCC--CCCCCCcccceEeccchhhhHHhhccCCCC
Confidence 3566788899997643 567777766 99999999987655322 21223566676666552 23444 478889
Q ss_pred cEEEEEEec
Q 004094 290 HLLNFLLNM 298 (774)
Q Consensus 290 ~l~~y~~~~ 298 (774)
...+|.+..
T Consensus 185 ~~~iWDlr~ 193 (1049)
T KOG0307|consen 185 RAVIWDLRK 193 (1049)
T ss_pred CceeccccC
Confidence 999988765
No 254
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=36.89 E-value=1.1e+02 Score=31.94 Aligned_cols=110 Identities=12% Similarity=0.186 Sum_probs=59.9
Q ss_pred EEEEEECCCEEEEEEcCCeEEEEEEcCceEEE-EEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCC-C
Q 004094 177 VNVATANASQVLLATGGGHLVYLEIGDGILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD-L 254 (774)
Q Consensus 177 I~~a~~~~~~lvv~~~~~~~~~~~~~~~~l~~-~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~-~ 254 (774)
|.++-.++.+++-..+++.+..+++..|.+-. ++ -.+.-|-|+.|. ...++-|.+ ||.|+||++.. +
T Consensus 363 IAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLe--GHEeLvRciRFd--------~krIVSGaY-DGkikvWdl~aal 431 (499)
T KOG0281|consen 363 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE--GHEELVRCIRFD--------NKRIVSGAY-DGKIKVWDLQAAL 431 (499)
T ss_pred ceehhccCeEEEecCCCceEEEEeccccHHHHHHh--chHHhhhheeec--------Cceeeeccc-cceEEEEeccccc
Confidence 44444555566555667888888876654211 11 112336688774 466788889 99999999864 2
Q ss_pred CeeE---EecCCCccCceeEEeeeec-CeeEEEEEeCCCcEEEEEEec
Q 004094 255 NLIT---KEHLGGEIIPRSVLLCAFE-GISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 255 ~~~~---~~~l~~~~~p~si~~~~~~-~~~~L~vgl~~G~l~~y~~~~ 298 (774)
.+-. +--+-. ..-++--+..+. +...++..+-|..++.|.++.
T Consensus 432 dpra~~~~~Cl~~-lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 432 DPRAPASTLCLRT-LVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred CCcccccchHHHh-hhhccceeEEEeecceEEEeccCCCeEEEEEcCC
Confidence 2200 000000 011121111111 344566777788888888764
No 255
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=36.47 E-value=1.4e+02 Score=22.88 Aligned_cols=40 Identities=8% Similarity=0.190 Sum_probs=27.5
Q ss_pred eEEEEEeeCCeEEEEccCCcEEEEeeCCCCCCccccceeeeEEEEE
Q 004094 599 MSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYH 644 (774)
Q Consensus 599 v~~~~~l~~~~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~ 644 (774)
.+++..|.+++|.+-|.+|.+.+|+|+++. ..+..+-+|.
T Consensus 21 ts~m~ql~~N~Fav~~e~~~iKIfkyd~~t------Nei~L~KE~~ 60 (63)
T PF14157_consen 21 TSNMTQLEHNHFAVVDEDGQIKIFKYDEDT------NEITLKKEFY 60 (63)
T ss_dssp -EEEEE-STTEEEEE-ETTEEEEEEEETTT------TEEEEEEEEE
T ss_pred cCceEEecCCEEEEEecCCeEEEEEeCCCC------CeEEEEEeee
Confidence 345667788899888999999999999743 3555555554
No 256
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=36.43 E-value=7.2e+02 Score=28.65 Aligned_cols=155 Identities=19% Similarity=0.131 Sum_probs=83.2
Q ss_pred eecCceeEecc-ccC-eEEEEEC--CEEEEEEeeecCCCchhhh------hhcccc-cc-eEEEEEEEeCC--EEEEEec
Q 004094 506 ETKGAVYSLNA-FNG-KLLAAIN--QKIQLYKWMLRDDGTRELQ------SECGHH-GH-ILALYVQTRGD--FIVVGDL 571 (774)
Q Consensus 506 ~~~g~v~~i~~-~~~-~lv~~~g--~~l~v~~~~~~~~~~~~l~------~~~~~~-~~-~~~~~l~~~~~--~I~vgD~ 571 (774)
+++.-|.|++. .++ .++++.| .+|++|+++ .+...++ ..+... ++ ..+.++....+ .|+-|+.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin---~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN---TGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEcc---CcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence 45777888887 444 4665544 789998874 2222222 122222 11 12344544433 6777888
Q ss_pred cccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCC-eEEEEccCCcEEEEeeCCCCCCccccceeeeEEEEEcCcccc
Q 004094 572 MKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD-IYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVN 650 (774)
Q Consensus 572 ~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~-~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~ 650 (774)
.+-+.++.-..-...+-+.+ +.-.|.++...+++ +++.+-++|-|.+..... ++- .+.|++.+...
T Consensus 192 ek~lr~wDprt~~kimkLrG---HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq--------QrC--l~T~~vH~e~V 258 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKLRG---HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ--------QRC--LATYIVHKEGV 258 (735)
T ss_pred ccceEEeccccccceeeeec---cccceEEEEEcCCCCeEeecCCCceEEeeeccc--------cce--eeeEEeccCce
Confidence 88877743222233344433 33345455445554 478888999999998864 232 23355544331
Q ss_pred eEEeeeeeecCCCCCCCCccEEEEEccccceEEEEec
Q 004094 651 RFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASL 687 (774)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~il~~t~~Gsi~~i~~l 687 (774)
+++.. ...=..+++|..+|-|+ .++|
T Consensus 259 ----WaL~~------~~sf~~vYsG~rd~~i~-~Tdl 284 (735)
T KOG0308|consen 259 ----WALQS------SPSFTHVYSGGRDGNIY-RTDL 284 (735)
T ss_pred ----EEEee------CCCcceEEecCCCCcEE-eccc
Confidence 22221 01124566677788877 4555
No 257
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=36.23 E-value=1e+02 Score=19.24 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=18.7
Q ss_pred CCcEEEEEECCCEEEEEEcCCeEEE
Q 004094 174 GYSVNVATANASQVLLATGGGHLVY 198 (774)
Q Consensus 174 ~~~I~~a~~~~~~lvv~~~~~~~~~ 198 (774)
|++|.+.+..+.++.++.+.+-+..
T Consensus 1 gE~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 1 GEEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred CceEEEEEccCCEEEEEeCCCeEEe
Confidence 3568888888899999887665543
No 258
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=35.85 E-value=41 Score=23.91 Aligned_cols=38 Identities=11% Similarity=0.284 Sum_probs=28.6
Q ss_pred hhHHHHHhcCCHHHHHHHHHhcCCCHHHHHHHHHHHhc
Q 004094 735 GDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTR 772 (774)
Q Consensus 735 Gdll~~fl~l~~~~q~~i~~~~~~~~~~i~~~l~~l~~ 772 (774)
-.+|....+=+.-.+.+||+.+|.+...+.+.|.+|..
T Consensus 6 ~~Il~~l~~~~~~t~~ela~~~~is~~tv~~~l~~L~~ 43 (48)
T PF13412_consen 6 RKILNYLRENPRITQKELAEKLGISRSTVNRYLKKLEE 43 (48)
T ss_dssp HHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34565666667788999999999999999988888753
No 259
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=34.71 E-value=1.4e+02 Score=20.02 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEe
Q 004094 376 EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQ 407 (774)
Q Consensus 376 ~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~ 407 (774)
.+.+.+ ++....-..++++++..|+.++++
T Consensus 13 ~~~v~~--id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 13 SNTVSV--IDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCEEEE--EECCCCeEEEEEECCCCCceEEeC
Confidence 355554 555556678899999999998864
No 260
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=33.54 E-value=79 Score=28.28 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=34.4
Q ss_pred hhHHHHHhcCCHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Q 004094 735 GDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRL 773 (774)
Q Consensus 735 Gdll~~fl~l~~~~q~~i~~~~~~~~~~i~~~l~~l~~~ 773 (774)
.--|+..++|++.+.+++.++.|.+.|+..+.+..+..|
T Consensus 90 ~~tLe~Llemsd~el~~~l~~~g~~~EE~rRL~~Al~~L 128 (129)
T PF13543_consen 90 VLTLEALLEMSDEELKEILNRCGAREEECRRLCRALSNL 128 (129)
T ss_pred hcCHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 345788899999999999999999999999998888765
No 261
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.50 E-value=5.7e+02 Score=26.56 Aligned_cols=92 Identities=22% Similarity=0.255 Sum_probs=54.1
Q ss_pred CceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECC-CCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEE
Q 004094 215 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP-DLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLN 293 (774)
Q Consensus 215 ~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~-~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~ 293 (774)
...+|++..++- .+.++..+. .+. .|.-+. +.+++.+-+|....-|+.+..+ ++..+.++-=+++.+..
T Consensus 85 ~~nvS~LTynp~------~rtLFav~n-~p~-~iVElt~~GdlirtiPL~g~~DpE~Ieyi--g~n~fvi~dER~~~l~~ 154 (316)
T COG3204 85 TANVSSLTYNPD------TRTLFAVTN-KPA-AIVELTKEGDLIRTIPLTGFSDPETIEYI--GGNQFVIVDERDRALYL 154 (316)
T ss_pred cccccceeeCCC------cceEEEecC-CCc-eEEEEecCCceEEEecccccCChhHeEEe--cCCEEEEEehhcceEEE
Confidence 455888888652 344444333 222 222222 2455555556544457777654 45678888889999999
Q ss_pred EEEecCCCccccce-eeecCCCCe
Q 004094 294 FLLNMKTGELTDRK-KVSLGTQPI 316 (774)
Q Consensus 294 y~~~~~~~~l~~~~-~~~lG~~pv 316 (774)
+.++..+..+.... +.++|..+-
T Consensus 155 ~~vd~~t~~~~~~~~~i~L~~~~k 178 (316)
T COG3204 155 FTVDADTTVISAKVQKIPLGTTNK 178 (316)
T ss_pred EEEcCCccEEeccceEEeccccCC
Confidence 99988654433222 566766553
No 262
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=33.00 E-value=1.3e+02 Score=33.54 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred eEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECC-CceEEEEEECCCCceEEE
Q 004094 378 ELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQ-TFEFISTYPLDTFEYGCS 456 (774)
Q Consensus 378 ~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~-~~~~i~~~~~~~~E~~~s 456 (774)
++.|++|.. +..++..++|.++.-..+..|+++.|+|+.... ....+.|+-+. +-....-+.--+.-.++.
T Consensus 426 n~eIfrire-KdIpve~velke~vi~FaWEP~gdkF~vi~g~~-------~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~ 497 (698)
T KOG2314|consen 426 NLEIFRIRE-KDIPVEVVELKESVIAFAWEPHGDKFAVISGNT-------VKNTVSFYAVETNIKKPSLVKELDKKFANT 497 (698)
T ss_pred eEEEEEeec-cCCCceeeecchheeeeeeccCCCeEEEEEccc-------cccceeEEEeecCCCchhhhhhhcccccce
Q ss_pred EEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCc
Q 004094 457 ILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGA 510 (774)
Q Consensus 457 i~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~ 510 (774)
+ +=..+..++||++ -...+|-++.|+.....++.+..-++.++
T Consensus 498 v----fwsPkG~fvvva~-------l~s~~g~l~F~D~~~a~~k~~~~~eh~~a 540 (698)
T KOG2314|consen 498 V----FWSPKGRFVVVAA-------LVSRRGDLEFYDTDYADLKDTASPEHFAA 540 (698)
T ss_pred E----EEcCCCcEEEEEE-------ecccccceEEEecchhhhhhccCcccccc
No 263
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=32.52 E-value=50 Score=26.06 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=22.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhc
Q 004094 749 MDEISKTMNVSVEELCKRVEELTR 772 (774)
Q Consensus 749 q~~i~~~~~~~~~~i~~~l~~l~~ 772 (774)
|++||+.+|++++.+.+.|.+|++
T Consensus 31 ~~~iA~~~g~sr~tv~r~l~~l~~ 54 (76)
T PF13545_consen 31 QEEIADMLGVSRETVSRILKRLKD 54 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 789999999999999999999875
No 264
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.98 E-value=5.4e+02 Score=25.88 Aligned_cols=229 Identities=16% Similarity=0.147 Sum_probs=109.6
Q ss_pred CCEEEEEEcCCeEEEEEEcC-ceEEEEE-eccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCC--eeEE
Q 004094 184 ASQVLLATGGGHLVYLEIGD-GILTEVK-HAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLN--LITK 259 (774)
Q Consensus 184 ~~~lvv~~~~~~~~~~~~~~-~~l~~~~-~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~--~~~~ 259 (774)
+..++-+.+++.+..|++.+ +....+. -.-...+|.-++... +.....++-+.+ ||.+-||.-.... ..+.
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wah----Pk~G~iLAScsY-DgkVIiWke~~g~w~k~~e 97 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAH----PKFGTILASCSY-DGKVIIWKEENGRWTKAYE 97 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecc----cccCcEeeEeec-CceEEEEecCCCchhhhhh
Confidence 33555555667777777765 3322221 123456677776643 124677777667 9999999865431 1111
Q ss_pred -ecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCcccccee---eecCCCCeEEEEEEeCC---------c
Q 004094 260 -EHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKK---VSLGTQPITLRTFSSKN---------T 326 (774)
Q Consensus 260 -~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~---~~lG~~pv~l~~~~~~~---------~ 326 (774)
.... ....+++..+-+-...|+|+..||.+-+++++.. |.-...|. -.+|...|.-.|-...| .
T Consensus 98 ~~~h~--~SVNsV~wapheygl~LacasSDG~vsvl~~~~~-g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~ 174 (299)
T KOG1332|consen 98 HAAHS--ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS-GGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAK 174 (299)
T ss_pred hhhhc--ccceeecccccccceEEEEeeCCCcEEEEEEcCC-CCccchhhhhccccccceeeecCcCCCccccccCcccc
Confidence 0111 1223444333333567999999999999998865 22111111 12343333322211000 0
Q ss_pred ceEEEec--CCCeEEEecCC-cE---EEeeecccCceeeecccCCCCCCc-EEEEe-CCeEEEEEEcCCC-CeEEEEEe-
Q 004094 327 THVFAAS--DRPTVIYSSNK-KL---LYSNVNLKEVSHMCPFNSAAFPDS-LAIAK-EGELTIGTIDDIQ-KLHIRSIP- 396 (774)
Q Consensus 327 ~~v~~~~--~~p~~l~~~~~-~~---~~~~~~~~~i~~~~~f~~~~~~~~-l~~~~-~~~l~i~~l~~~~-~~~~~~i~- 396 (774)
..=|+.| |+..-+...+. .. ++..-+.+=++.++--++..+|.+ +.-++ ++.+.|.+.+... .|..+-+.
T Consensus 175 ~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~ 254 (299)
T KOG1332|consen 175 VKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE 254 (299)
T ss_pred cceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc
Confidence 1113333 22222222111 10 000000011233332233344544 33333 6778888877432 33222211
Q ss_pred CCCcccEEEEecCCCEEEEEEecc
Q 004094 397 LGEHPRRICHQEQSRTFAICSLKN 420 (774)
Q Consensus 397 l~~tp~~i~y~~~~~~~~v~~~~~ 420 (774)
.....-++.++...+.++|.+.++
T Consensus 255 f~~~~w~vSWS~sGn~LaVs~GdN 278 (299)
T KOG1332|consen 255 FPDVVWRVSWSLSGNILAVSGGDN 278 (299)
T ss_pred CCcceEEEEEeccccEEEEecCCc
Confidence 122345677788888888888664
No 265
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=31.90 E-value=59 Score=23.81 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhc
Q 004094 747 TRMDEISKTMNVSVEELCKRVEELTR 772 (774)
Q Consensus 747 ~~q~~i~~~~~~~~~~i~~~l~~l~~ 772 (774)
-...++|+.+|+|...|.++|++|+.
T Consensus 16 it~~eLa~~l~vS~rTi~~~i~~L~~ 41 (55)
T PF08279_consen 16 ITAKELAEELGVSRRTIRRDIKELRE 41 (55)
T ss_dssp BEHHHHHHHCTS-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999875
No 266
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=31.48 E-value=1.8e+02 Score=31.85 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=51.6
Q ss_pred eeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeec
Q 004094 429 MHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETK 508 (774)
Q Consensus 429 ~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~ 508 (774)
.+.+-+.+|.+-+.+-..-. ..-.+.+++ +.++ ..|. +-|+.. -++.||++.+ ++.++....+
T Consensus 272 nGtVSlWSP~skePLvKiLc-H~g~V~siA---v~~~-G~YM-aTtG~D---------r~~kIWDlR~--~~ql~t~~tp 334 (545)
T KOG1272|consen 272 NGTVSLWSPNSKEPLVKILC-HRGPVSSIA---VDRG-GRYM-ATTGLD---------RKVKIWDLRN--FYQLHTYRTP 334 (545)
T ss_pred CceEEecCCCCcchHHHHHh-cCCCcceEE---ECCC-CcEE-eecccc---------cceeEeeecc--ccccceeecC
Confidence 46788888876654422111 111123332 3332 3333 334332 3788999864 4456665567
Q ss_pred CceeEeccc-cCeEEEEECCEEEEEE
Q 004094 509 GAVYSLNAF-NGKLLAAINQKIQLYK 533 (774)
Q Consensus 509 g~v~~i~~~-~~~lv~~~g~~l~v~~ 533 (774)
-|...++-- .|.|+++.|.-+.+|+
T Consensus 335 ~~a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 335 HPASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred CCccccccccccceeeecCCeeeeeh
Confidence 777777755 4678899999999976
No 267
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=31.09 E-value=5.3e+02 Score=29.04 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=39.1
Q ss_pred CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCC
Q 004094 184 ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLN 255 (774)
Q Consensus 184 ~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~ 255 (774)
.+..+.+..+..+.+|+...+.+..-.... ..-++|+++.+ ...+++.|.. ++++.+|++..-.
T Consensus 501 ~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~-~~svtslai~~------ng~~l~s~s~-d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 501 ADITFTAHEDRSIRFFDNKTGKILHSMVAH-KDSVTSLAIDP------NGPYLMSGSH-DGSVRLWKLDVKT 564 (577)
T ss_pred CCeeEecccCCceecccccccccchheeec-cceecceeecC------CCceEEeecC-Cceeehhhccchh
Confidence 445555666667777654434332211112 23478888865 3567888877 9999999986533
No 268
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=30.62 E-value=6.6e+02 Score=26.43 Aligned_cols=229 Identities=12% Similarity=0.103 Sum_probs=116.0
Q ss_pred CcEEEEeC--CeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEE
Q 004094 369 DSLAIAKE--GELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTY 446 (774)
Q Consensus 369 ~~l~~~~~--~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~ 446 (774)
+-|+.+.+ +-+++..+.. ..++-+-+.-|.....|-++|...-+++.+++. ..||+.+-.+...+.-+
T Consensus 105 ~p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD---------~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD---------HSVRLWNIQTDVCVAVF 174 (385)
T ss_pred CeeEEeecceeEEEEEecch-hhhccceeccCccchhhhcCCCCCcEEEEecCC---------ceEEEEeccCCeEEEEe
Confidence 34555543 3444443332 234445556677888889999887888877764 37888888777666433
Q ss_pred ---ECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe----CCeEEEE-----------------
Q 004094 447 ---PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE----DGKLQLI----------------- 502 (774)
Q Consensus 447 ---~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~----~~kl~~~----------------- 502 (774)
+--. .+++|+. +.-++. +|+-+ +.. =.|.+|++. .++++..
T Consensus 175 GG~egHr-deVLSvD---~~~~gd-~i~Sc-GmD---------hslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~ 239 (385)
T KOG1034|consen 175 GGVEGHR-DEVLSVD---FSLDGD-RIASC-GMD---------HSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKT 239 (385)
T ss_pred ccccccc-CcEEEEE---EcCCCC-eeecc-CCc---------ceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccc
Confidence 3222 2334443 332222 44322 221 267777776 1223222
Q ss_pred ------EEEeecCceeEeccccCeEEE-EECCEEEEEEe-eecCCCchhhhhh--cccc--cceEE--------EEEEEe
Q 004094 503 ------AEKETKGAVYSLNAFNGKLLA-AINQKIQLYKW-MLRDDGTRELQSE--CGHH--GHILA--------LYVQTR 562 (774)
Q Consensus 503 ------~~~~~~g~v~~i~~~~~~lv~-~~g~~l~v~~~-~~~~~~~~~l~~~--~~~~--~~~~~--------~~l~~~ 562 (774)
....++.+|-|+.-+.++++. ++++.|..++. ...+. -.+..+. +... .+.++ -+.+..
T Consensus 240 ~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~-~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~ 318 (385)
T KOG1034|consen 240 HFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEES-IHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW 318 (385)
T ss_pred ccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhh-hhccCCCccceeeeeEeccCccceEEEEEeecHH
Confidence 112346677788777888774 77788888764 11111 0011111 1000 00111 122345
Q ss_pred CCEEEEEeccccEEEEEEEcc-CCeEEEEeccCCcceeEEEEEeeCCeEE-EEccCCcEEEEe
Q 004094 563 GDFIVVGDLMKSISLLIYKHE-EGAIEERARDYNANWMSAVEILDDDIYL-GAENNFNLFTVR 623 (774)
Q Consensus 563 ~~~I~vgD~~~Sv~~~~~~~~-~~~l~~~a~D~~~~~v~~~~~l~~~~~l-~~D~~gnl~~l~ 623 (774)
...+++|-....+.++..+.. +.+..-+......+-|....|-.+..++ ..-.+|-++-+.
T Consensus 319 ~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 319 QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 667778888888877665543 2244333333333444444444444433 223355555443
No 269
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=30.26 E-value=6.5e+02 Score=26.26 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=34.9
Q ss_pred eEEEEEeeeeCCCCCCCcceEEEEEEEeC--CeEEEEEEEeecCceeEecccc--CeEEEEECCE--EEEEEee
Q 004094 468 VYYCVGTAYVLPEENEPTKGRILVFIVED--GKLQLIAEKETKGAVYSLNAFN--GKLLAAINQK--IQLYKWM 535 (774)
Q Consensus 468 ~~i~VGT~~~~~~e~~~~~Grl~v~~i~~--~kl~~~~~~~~~g~v~~i~~~~--~~lv~~~g~~--l~v~~~~ 535 (774)
.++++||. .|- |+.++.+ .++..+.. ..+|+++..+. +.|++-.|++ |+.|.+.
T Consensus 14 ~~lL~GTe----------~Gl-y~~~~~~~~~~~~kl~~---~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 14 KWLLVGTE----------EGL-YVLNISDQPGTLEKLIG---RRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred cEEEEEeC----------Cce-EEEEcccCCCCeEEecC---cCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 68999994 254 4444543 34444443 45888888874 4466667777 8888874
No 270
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=30.21 E-value=4.6e+02 Score=32.04 Aligned_cols=71 Identities=21% Similarity=0.356 Sum_probs=50.1
Q ss_pred EEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe--CCeEEEEEEEeecCceeEecccc------CeEEEEE
Q 004094 454 GCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE--DGKLQLIAEKETKGAVYSLNAFN------GKLLAAI 525 (774)
Q Consensus 454 ~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~--~~kl~~~~~~~~~g~v~~i~~~~------~~lv~~~ 525 (774)
+.+.+.-.|.+.+.+=+++|.+. ++-++.++ +++++.+++.++=|.|.+++.++ ++|+++.
T Consensus 14 i~~~~~g~fs~~k~qeIv~~~~s-----------~l~L~~~d~~~G~l~~i~~~~vFg~Irsla~~~lt~~~kD~LaV~S 82 (1205)
T KOG1898|consen 14 IVQAIYGNFSGPKAQEIVLGRGS-----------ILELYRIDENDGRLKTICRQEVFGTIRSLAAFRLTGGTKDYLAVGS 82 (1205)
T ss_pred eeeeehhhccCCchheEEEEeee-----------EEEEEEecCCCceEEEEEEEeehhhhhhhhccccCCCCccEEEEEc
Confidence 34444445655545556666542 44455555 67999999999999999999996 8887766
Q ss_pred C-CEEEEEEee
Q 004094 526 N-QKIQLYKWM 535 (774)
Q Consensus 526 g-~~l~v~~~~ 535 (774)
. .+|.+.++.
T Consensus 83 DSGri~il~y~ 93 (1205)
T KOG1898|consen 83 DSGRISILEYN 93 (1205)
T ss_pred CCceEEEEEec
Confidence 5 688887875
No 271
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=29.94 E-value=49 Score=23.04 Aligned_cols=38 Identities=16% Similarity=0.354 Sum_probs=25.4
Q ss_pred ehhHHHHHhcCCHHHHHHHHHhcCCCHHHHHHHHHHHh
Q 004094 734 DGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELT 771 (774)
Q Consensus 734 DGdll~~fl~l~~~~q~~i~~~~~~~~~~i~~~l~~l~ 771 (774)
|-.+|..+..=+..--.+||+.+|.|...+.+-+..|+
T Consensus 5 D~~Il~~Lq~d~r~s~~~la~~lglS~~~v~~Ri~rL~ 42 (42)
T PF13404_consen 5 DRKILRLLQEDGRRSYAELAEELGLSESTVRRRIRRLE 42 (42)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccHHHHHHHHCcCHHHHHHHHHHhC
Confidence 44455555444555568999999999999988777664
No 272
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=29.66 E-value=92 Score=21.46 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=22.4
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHhc
Q 004094 745 SRTRMDEISKTMNVSVEELCKRVEELTR 772 (774)
Q Consensus 745 ~~~~q~~i~~~~~~~~~~i~~~l~~l~~ 772 (774)
+.+++.++|+..|.+..+|..-..+-||
T Consensus 12 s~~ek~~L~~~tgls~~Qi~~WF~NaRr 39 (40)
T PF05920_consen 12 SKEEKEELAKQTGLSRKQISNWFINARR 39 (40)
T ss_dssp -HHHHHHHHHHHTS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHhHc
Confidence 5778889999999999999988877664
No 273
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=29.04 E-value=5.3e+02 Score=24.81 Aligned_cols=91 Identities=19% Similarity=0.195 Sum_probs=54.8
Q ss_pred CCCceeeeEEEEEECCCceEEEEEECCCCce---EEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeE
Q 004094 423 CAEESEMHFVRLLDDQTFEFISTYPLDTFEY---GCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKL 499 (774)
Q Consensus 423 ~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~---~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl 499 (774)
..++...+.|-+.|..+.+. .++.+.+.+. +-- ..| +. +..=.+++|-++ ...+..|-||+|.+..+.+
T Consensus 81 ~a~eEgiGkIYIkn~~~~~~-~~L~i~~~~~k~sPK~-i~W-iD-D~~L~vIIG~a~----GTvS~GGnLy~~nl~tg~~ 152 (200)
T PF15525_consen 81 EAEEEGIGKIYIKNLNNNNW-WSLQIDQNEEKYSPKY-IEW-ID-DNNLAVIIGYAH----GTVSKGGNLYKYNLNTGNL 152 (200)
T ss_pred ccccccceeEEEEecCCCce-EEEEecCcccccCCce-eEE-ec-CCcEEEEEcccc----ceEccCCeEEEEEccCCce
Confidence 34445567788888654433 3333433331 111 223 22 234445556544 2456789999999999999
Q ss_pred EEEEEE-eecCceeEeccccCeE
Q 004094 500 QLIAEK-ETKGAVYSLNAFNGKL 521 (774)
Q Consensus 500 ~~~~~~-~~~g~v~~i~~~~~~l 521 (774)
+.++.. +-+..|.++...++.|
T Consensus 153 ~~ly~~~dkkqQVis~e~~gd~L 175 (200)
T PF15525_consen 153 TELYEWKDKKQQVISAEKNGDNL 175 (200)
T ss_pred eEeeeccccceeEEEEEEeCCEE
Confidence 988875 4477777777666665
No 274
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=28.29 E-value=1e+03 Score=27.98 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=70.2
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCc
Q 004094 406 HQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPT 485 (774)
Q Consensus 406 y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~ 485 (774)
..|.++.+-++-+.-. -+--++.| |=+.+.+|.+++...|+||..+.... +.+++++|..-. .
T Consensus 35 ~s~~sn~IdiGIS~S~--------ISsYIi~P-TPKLiwsypi~pt~iV~~~dV~~~~~-~~~~~~~glt~r-------K 97 (670)
T PF10395_consen 35 FSPDSNQIDIGISGSA--------ISSYIIKP-TPKLIWSYPISPTTIVECCDVLEKSD-GKKLYCVGLTER-------K 97 (670)
T ss_pred cCCCCceEEEEeccch--------hhheecCC-CcceeEeeccCcCceEEEEEeEecCC-CcEEEEEEEeeC-------C
Confidence 3556676666665520 01123455 45678899999999999999887653 678999997532 2
Q ss_pred ceEEEEEEEe---------CCeEEEEEEEeecCceeEeccc-cCe-E-EEEECCEEEEEEe
Q 004094 486 KGRILVFIVE---------DGKLQLIAEKETKGAVYSLNAF-NGK-L-LAAINQKIQLYKW 534 (774)
Q Consensus 486 ~Grl~v~~i~---------~~kl~~~~~~~~~g~v~~i~~~-~~~-l-v~~~g~~l~v~~~ 534 (774)
+-+++..+.+ +..-.-.++...++.|-+|.-. ++. + ++-.++.|.+|++
T Consensus 98 k~~ll~i~~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~ 158 (670)
T PF10395_consen 98 KFKLLLIERKVGSTEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDF 158 (670)
T ss_pred eeEEEEEEccCccccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEec
Confidence 3355555544 1112223334568888888877 444 3 3445678888887
No 275
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=28.20 E-value=3e+02 Score=29.00 Aligned_cols=67 Identities=10% Similarity=0.086 Sum_probs=39.5
Q ss_pred CCEEEEEEcCCeEEEEEEcC---ceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCe
Q 004094 184 ASQVLLATGGGHLVYLEIGD---GILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNL 256 (774)
Q Consensus 184 ~~~lvv~~~~~~~~~~~~~~---~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~ 256 (774)
++.+.-.+.+++++.+++.. |.......+-++..|+|+-+... ...++++ ...+|.|.+|++.-.+.
T Consensus 264 ~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~-----s~q~Lma-S~M~gkikLyD~R~~K~ 333 (425)
T KOG2695|consen 264 DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQF-----SQQKLMA-SDMTGKIKLYDLRATKC 333 (425)
T ss_pred CCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhcc-----ccceEee-ccCcCceeEeeehhhhc
Confidence 44555555667776666543 33333344566777888865321 1345554 44599999999865433
No 276
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=27.66 E-value=6.8e+02 Score=25.61 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=58.8
Q ss_pred eeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEee
Q 004094 428 EMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKET 507 (774)
Q Consensus 428 ~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~ 507 (774)
.+|.|+-+|+.+.+++.+..|++.-....+..+ ...|..=| -..|..++|+. ..++.+.....
T Consensus 66 G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~------~d~l~qLT---------Wk~~~~f~yd~--~tl~~~~~~~y 128 (264)
T PF05096_consen 66 GQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL------GDKLYQLT---------WKEGTGFVYDP--NTLKKIGTFPY 128 (264)
T ss_dssp TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE------TTEEEEEE---------SSSSEEEEEET--TTTEEEEEEE-
T ss_pred CcEEEEEEECCCCcEEEEEECCccccceeEEEE------CCEEEEEE---------ecCCeEEEEcc--ccceEEEEEec
Confidence 368999999999999999999988777777654 22344444 24577777764 34777777777
Q ss_pred cCceeEeccccCeEEEEEC-CEEEEEE
Q 004094 508 KGAVYSLNAFNGKLLAAIN-QKIQLYK 533 (774)
Q Consensus 508 ~g~v~~i~~~~~~lv~~~g-~~l~v~~ 533 (774)
+|-=-.+|.-+..|+.+-| .+|+.++
T Consensus 129 ~~EGWGLt~dg~~Li~SDGS~~L~~~d 155 (264)
T PF05096_consen 129 PGEGWGLTSDGKRLIMSDGSSRLYFLD 155 (264)
T ss_dssp SSS--EEEECSSCEEEE-SSSEEEEE-
T ss_pred CCcceEEEcCCCEEEEECCccceEEEC
Confidence 7766677766778999998 5676654
No 277
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=27.57 E-value=7.7e+02 Score=28.80 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=57.9
Q ss_pred CCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEEC---------CC
Q 004094 183 NASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL---------PD 253 (774)
Q Consensus 183 ~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l---------~~ 253 (774)
.+...+|-.++..+..++...+.++--+.++-...|-.++..+.+++ +..++||+- +.|.+|.- |.
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~---qsiLaVGf~--~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG---QSILAVGFP--HHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC---CEEEEEEcC--cEEEEEEccchhhhcCCcc
Confidence 34566665556677777666566554455556778888887665543 567888865 56777752 11
Q ss_pred CCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEE
Q 004094 254 LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLN 293 (774)
Q Consensus 254 ~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~ 293 (774)
...+....+. +..|+.+-=....+.-.|+||++|...+.
T Consensus 115 w~~i~~i~i~-~~T~h~Igds~Wl~~G~LvV~sGNqlfv~ 153 (631)
T PF12234_consen 115 WAPIRKIDIS-SHTPHPIGDSIWLKDGTLVVGSGNQLFVF 153 (631)
T ss_pred cceeEEEEee-cCCCCCccceeEecCCeEEEEeCCEEEEE
Confidence 2222222222 12333221111223567899998865443
No 278
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=27.38 E-value=8e+02 Score=26.35 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=54.8
Q ss_pred CCeEEEEEEcCc-eEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCe---eEEecCCCccCc
Q 004094 193 GGHLVYLEIGDG-ILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNL---ITKEHLGGEIIP 268 (774)
Q Consensus 193 ~~~~~~~~~~~~-~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~---~~~~~l~~~~~p 268 (774)
++.+....+..+ +-..+..+....+|-.++.+. ...+++.|-. +|++.||+|..++. +.....-. .+.
T Consensus 279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr------~~~lLasG~D-dGt~~iwDLR~~~~~~pVA~fk~Hk-~pI 350 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR------REPLLASGGD-DGTLSIWDLRQFKSGQPVATFKYHK-API 350 (440)
T ss_pred CceEEEEEecCCCccceeEeeccCCceeeEEccC------CcceeeecCC-CceEEEEEhhhccCCCcceeEEecc-CCe
Confidence 455555555432 111122245566777777642 2347888888 99999999976533 32211100 122
Q ss_pred eeEEeeeecCeeEEEEEeCCCcEEEEEEe
Q 004094 269 RSVLLCAFEGISYLLCALGDGHLLNFLLN 297 (774)
Q Consensus 269 ~si~~~~~~~~~~L~vgl~~G~l~~y~~~ 297 (774)
.|+.-.+. +...+.++..|.++..|.+.
T Consensus 351 tsieW~p~-e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 351 TSIEWHPH-EDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eEEEeccc-cCceEEeccCCCcEEEEEee
Confidence 34433332 23457788899999999875
No 279
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=27.36 E-value=7.4e+02 Score=25.99 Aligned_cols=144 Identities=13% Similarity=0.146 Sum_probs=71.8
Q ss_pred eEEEEEeeee--CCCCCCCcceEEEEEEEeCCeEEEEEE-EeecCceeEeccccCeEEEEEC--CEEEEEEeeecCCCch
Q 004094 468 VYYCVGTAYV--LPEENEPTKGRILVFIVEDGKLQLIAE-KETKGAVYSLNAFNGKLLAAIN--QKIQLYKWMLRDDGTR 542 (774)
Q Consensus 468 ~~i~VGT~~~--~~~e~~~~~Grl~v~~i~~~kl~~~~~-~~~~g~v~~i~~~~~~lv~~~g--~~l~v~~~~~~~~~~~ 542 (774)
-.+.+||.-. .+.......|+||-++-..+..+++.. ..+...+ |..+-+..++++-- +.|+-|.++. ..+..
T Consensus 122 G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGl-a~SpDg~tly~aDT~~~~i~r~~~d~-~~g~~ 199 (307)
T COG3386 122 GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGL-AFSPDGKTLYVADTPANRIHRYDLDP-ATGPI 199 (307)
T ss_pred CCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCce-EECCCCCEEEEEeCCCCeEEEEecCc-ccCcc
Confidence 4566777541 111234567876666543445555554 2332222 33333445655543 6666666642 11110
Q ss_pred h-hhhhccc---ccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCC---eEEEEcc
Q 004094 543 E-LQSECGH---HGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD---IYLGAEN 615 (774)
Q Consensus 543 ~-l~~~~~~---~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~---~~l~~D~ 615 (774)
. -....+. .+.+-..++...|+ +++.....+=.+.+|.++ .++....+-+. .+++++.|-..+ .++.++.
T Consensus 200 ~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 200 GGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-KRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred CCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-CcEEEEEECCC-CCCccceEeCCCcCEEEEEecC
Confidence 0 0001111 12233455666666 455666665456678888 55555555554 677788887642 3555555
Q ss_pred C
Q 004094 616 N 616 (774)
Q Consensus 616 ~ 616 (774)
.
T Consensus 277 ~ 277 (307)
T COG3386 277 S 277 (307)
T ss_pred C
Confidence 4
No 280
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=26.49 E-value=4.7e+02 Score=27.96 Aligned_cols=100 Identities=17% Similarity=0.358 Sum_probs=57.7
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc--cC----eEEEEECCEEEEEEeeecCCC
Q 004094 467 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF--NG----KLLAAINQKIQLYKWMLRDDG 540 (774)
Q Consensus 467 ~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~--~~----~lv~~~g~~l~v~~~~~~~~~ 540 (774)
..+|+-|+ ..|-+.+++...+..+++. -..||+.++.-+ +. .+.++..+++++|.|+..++
T Consensus 115 ~~~Iltgs----------YDg~~riWd~~Gk~~~~~~--Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~- 181 (423)
T KOG0313|consen 115 SKWILTGS----------YDGTSRIWDLKGKSIKTIV--GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN- 181 (423)
T ss_pred CceEEEee----------cCCeeEEEecCCceEEEEe--cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh-
Confidence 45666555 2366677766433222222 346777766655 21 23456778999999974332
Q ss_pred chhhhhhc-ccccceEEEEEEEeCCEEEEEeccccEEEEE
Q 004094 541 TRELQSEC-GHHGHILALYVQTRGDFIVVGDLMKSISLLI 579 (774)
Q Consensus 541 ~~~l~~~~-~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~ 579 (774)
..+...+| .+...+..++....+++++-|-.-..+.+..
T Consensus 182 ~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs 221 (423)
T KOG0313|consen 182 KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWS 221 (423)
T ss_pred hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecc
Confidence 22333333 3333344455555678888888888887765
No 281
>PF02023 SCAN: SCAN domain; InterPro: IPR003309 A number of C2H2-zinc finger proteins contain a highly conserved N-terminal motif termed the SCAN domain. The SCAN domain may play an important role in the assembly and function of this newly defined subclass of transcriptional regulators [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3LHR_B 4E6S_A 2FI2_A 1Y7Q_A.
Probab=26.36 E-value=1.2e+02 Score=25.67 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=37.9
Q ss_pred CcEEehhHHHHHhc-CCHHHHHHHHHhcCCCHHHHHHHHHHHhccC
Q 004094 730 KNFLDGDLIESFLD-LSRTRMDEISKTMNVSVEELCKRVEELTRLH 774 (774)
Q Consensus 730 ~~~iDGdll~~fl~-l~~~~q~~i~~~~~~~~~~i~~~l~~l~~~~ 774 (774)
..++|-=+|++|+. ||.+.|..|.+.---+.++...+++++.+.|
T Consensus 43 eqi~ellvlEQFL~~lP~e~~~wV~e~~p~s~~ea~~Lae~~~~~~ 88 (95)
T PF02023_consen 43 EQILELLVLEQFLNILPPEVQTWVRERKPESAEEAVALAEDYQRAR 88 (95)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHHHTCS-SSHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Confidence 36899999999998 9999999999988888999999999987754
No 282
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=25.23 E-value=96 Score=24.18 Aligned_cols=37 Identities=11% Similarity=0.224 Sum_probs=29.0
Q ss_pred HHHHHhcCCH--HHHHHHHHhcCCCHHHHHHHHHHHhcc
Q 004094 737 LIESFLDLSR--TRMDEISKTMNVSVEELCKRVEELTRL 773 (774)
Q Consensus 737 ll~~fl~l~~--~~q~~i~~~~~~~~~~i~~~l~~l~~~ 773 (774)
+|+.+..-+. -.+.+||+.+|.+...+.+.|..|.+.
T Consensus 11 IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~ 49 (68)
T smart00550 11 ILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKK 49 (68)
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4555555545 678999999999999999999988753
No 283
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=24.98 E-value=7.2e+02 Score=25.01 Aligned_cols=198 Identities=16% Similarity=0.197 Sum_probs=98.9
Q ss_pred ccceecCceEEEeecCCC----CCCCcEEEeeeccCcCcccceEEecCCCCCCCeEEEEEecCC-C-----------CcE
Q 004094 2 LTFYVLPKQLIKLNLQPD----AKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYK-D-----------GSL 65 (774)
Q Consensus 2 ~~~~~gds~l~~~~~~~~----~~~s~~~~~~~~~n~~Pi~D~~v~~~~~~~~~~l~~~sG~g~-~-----------g~L 65 (774)
.|+-+||=.++.|....+ +++. ..++-.-..=|||.++...+. ++..+|.|. . +.=
T Consensus 27 agn~~G~iav~sl~sl~s~sa~~~gk-~~iv~eqahdgpiy~~~f~d~-------~Lls~gdG~V~gw~W~E~~es~~~K 98 (325)
T KOG0649|consen 27 AGNLFGDIAVLSLKSLDSGSAEPPGK-LKIVPEQAHDGPIYYLAFHDD-------FLLSGGDGLVYGWEWNEEEESLATK 98 (325)
T ss_pred EecCCCeEEEEEehhhhccccCCCCC-cceeeccccCCCeeeeeeehh-------heeeccCceEEEeeehhhhhhccch
Confidence 466778877777775321 2333 455666678899999998752 333344331 1 111
Q ss_pred EEEecCCceeEEEeeeCCCcceeeeeecCCCCCCceEEEEEecCceEEEEecCC-CCeeeeeecCccccCcceeeeecCC
Q 004094 66 RIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLE-DELEETEIEGFCSQTQTLFCHDAIY 144 (774)
Q Consensus 66 ~~lr~gi~~~~~~~~~l~~~~~iw~~~~~~~~~~~~~li~S~~~~T~vl~~~~~-~~~~e~~~~~f~~~~~Tl~~~~~~~ 144 (774)
+.++.-++.+ ....+.|.+..||..+.. ++.++.. ....+++++-+ +.+... |.--...+++-. +.
T Consensus 99 ~lwe~~~P~~-~~~~evPeINam~ldP~e-----nSi~~Ag--GD~~~y~~dlE~G~i~r~----~rGHtDYvH~vv-~R 165 (325)
T KOG0649|consen 99 RLWEVKIPMQ-VDAVEVPEINAMWLDPSE-----NSILFAG--GDGVIYQVDLEDGRIQRE----YRGHTDYVHSVV-GR 165 (325)
T ss_pred hhhhhcCccc-cCcccCCccceeEeccCC-----CcEEEec--CCeEEEEEEecCCEEEEE----EcCCcceeeeee-ec
Confidence 2222222222 224577888888887542 3333333 44566665431 222211 000011122211 11
Q ss_pred CeEEEEe----cCcEEEEecCCCceeeeEe---------CCCCCcEEEEEECCCEEEEEEcCCeEEEEEEcCceEEEEEe
Q 004094 145 NQLVQVT----SGSVRLVSSTSRELRNEWK---------SPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKH 211 (774)
Q Consensus 145 ~~~vQVT----~~~i~l~~~~~~~~~~~~~---------~~~~~~I~~a~~~~~~lvv~~~~~~~~~~~~~~~~l~~~~~ 211 (774)
+.-=||. ...+|+.+.++++.++.+. |+-|+=|-+.+.++++++.. .+..+..+++...+-. ..
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG-gGp~lslwhLrsse~t--~v 242 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG-GGPKLSLWHLRSSEST--CV 242 (325)
T ss_pred ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEec-CCCceeEEeccCCCce--EE
Confidence 1222332 3457777777655444433 22344477778888888865 2456666666442222 22
Q ss_pred ccCCceeEEEEe
Q 004094 212 AQLEYEISCLDI 223 (774)
Q Consensus 212 ~~l~~~is~l~~ 223 (774)
++++..+--++|
T Consensus 243 fpipa~v~~v~F 254 (325)
T KOG0649|consen 243 FPIPARVHLVDF 254 (325)
T ss_pred EecccceeEeee
Confidence 455555555555
No 284
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=24.84 E-value=2e+02 Score=20.12 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=20.3
Q ss_pred EEEEEEeCCEEEEEeccccEEEEE
Q 004094 556 ALYVQTRGDFIVVGDLMKSISLLI 579 (774)
Q Consensus 556 ~~~l~~~~~~I~vgD~~~Sv~~~~ 579 (774)
+..+.+.||+.+++|-..++.++.
T Consensus 4 a~~v~v~g~yaYva~~~~Gl~IvD 27 (42)
T PF08309_consen 4 ARDVAVSGNYAYVADGNNGLVIVD 27 (42)
T ss_pred EEEEEEECCEEEEEeCCCCEEEEE
Confidence 456788999999999999988754
No 285
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=24.83 E-value=95 Score=21.60 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhc
Q 004094 747 TRMDEISKTMNVSVEELCKRVEELTR 772 (774)
Q Consensus 747 ~~q~~i~~~~~~~~~~i~~~l~~l~~ 772 (774)
..+.++|+.+|.++..+.+.|..|.+
T Consensus 9 ~s~~~la~~l~~s~~tv~~~l~~L~~ 34 (48)
T smart00419 9 LTRQEIAELLGLTRETVSRTLKRLEK 34 (48)
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34789999999999999999988875
No 286
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=24.50 E-value=9.7e+02 Score=26.75 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=39.6
Q ss_pred cceEEEEEecCCEEEEEECCCCCeeEEecCCCccC-ceeEEeeeecCeeEEEEEeCCCcEEEEEEec
Q 004094 233 SQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEII-PRSVLLCAFEGISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 233 ~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~-p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 298 (774)
+..++||-. ..++.||+|-.-++-....++...+ +..+++. .+....|....||.+.+|.+..
T Consensus 477 grtLivGGe-astlsiWDLAapTprikaeltssapaCyALa~s--pDakvcFsccsdGnI~vwDLhn 540 (705)
T KOG0639|consen 477 GRTLIVGGE-ASTLSIWDLAAPTPRIKAELTSSAPACYALAIS--PDAKVCFSCCSDGNIAVWDLHN 540 (705)
T ss_pred CceEEeccc-cceeeeeeccCCCcchhhhcCCcchhhhhhhcC--CccceeeeeccCCcEEEEEccc
Confidence 567888888 7799999985433322333432111 1112221 1445688899999999998865
No 287
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=24.28 E-value=5.4e+02 Score=23.31 Aligned_cols=110 Identities=14% Similarity=0.109 Sum_probs=53.9
Q ss_pred eEEEEEecCCEEEEEECCCCCe--------eEEecCCCccCceeEEeeeec---CeeEEEEEeCCCcEEEEEEecCCCcc
Q 004094 235 IAAVGMWTDISVRIFSLPDLNL--------ITKEHLGGEIIPRSVLLCAFE---GISYLLCALGDGHLLNFLLNMKTGEL 303 (774)
Q Consensus 235 ~~~vg~~~~~~i~i~~l~~~~~--------~~~~~l~~~~~p~si~~~~~~---~~~~L~vgl~~G~l~~y~~~~~~~~l 303 (774)
.++.++. .|.|.|++...... +..-.+. ..+.+++-.++. ++..|++|+.+. |+.|.++..+ .+
T Consensus 12 cL~~aT~-~gKV~IH~ph~~~~~~~~~~~~i~~LNin--~~italaaG~l~~~~~~D~LliGt~t~-llaYDV~~N~-d~ 86 (136)
T PF14781_consen 12 CLACATT-GGKVFIHNPHERGQRTGRQDSDISFLNIN--QEITALAAGRLKPDDGRDCLLIGTQTS-LLAYDVENNS-DL 86 (136)
T ss_pred eEEEEec-CCEEEEECCCccccccccccCceeEEECC--CceEEEEEEecCCCCCcCEEEEeccce-EEEEEcccCc-hh
Confidence 4555555 77888887542211 1111222 244555545553 467799999875 7789887532 22
Q ss_pred ccceeeecCCCCeEEEEEEeCCcceEEEecCCCeEEEecCCcEEEee
Q 004094 304 TDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSN 350 (774)
Q Consensus 304 ~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~~~~~~~~~ 350 (774)
+.|..+-|-..+.+-.+.....+-+++-|+....-|..++.=.|+.
T Consensus 87 -Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 87 -FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred -hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 2233344444443333322223344444444444454444433443
No 288
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=24.20 E-value=8.1e+02 Score=25.35 Aligned_cols=37 Identities=24% Similarity=0.179 Sum_probs=27.1
Q ss_pred ccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCC
Q 004094 212 AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDL 254 (774)
Q Consensus 212 ~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~ 254 (774)
+..++||--+++.. .+.-+++..-.||++++|.|.++
T Consensus 193 IAHDKEV~DIaf~~------~s~~~FASvgaDGSvRmFDLR~l 229 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLK------GSRDVFASVGADGSVRMFDLRSL 229 (364)
T ss_pred EecCcceeEEEecc------CccceEEEecCCCcEEEEEeccc
Confidence 46788998888853 13445556666999999999875
No 289
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=23.99 E-value=1.3e+02 Score=22.41 Aligned_cols=39 Identities=26% Similarity=0.441 Sum_probs=24.9
Q ss_pred EehhHHHHHhcCCHH--HHHHHHHhcCCC------HHHHHHHHHHHh
Q 004094 733 LDGDLIESFLDLSRT--RMDEISKTMNVS------VEELCKRVEELT 771 (774)
Q Consensus 733 iDGdll~~fl~l~~~--~q~~i~~~~~~~------~~~i~~~l~~l~ 771 (774)
+|-+++.+|..|..+ .-.++.+++|++ .+...+.||||=
T Consensus 8 i~~~lVd~F~~mGF~~dkVvevlrrlgik~~n~~dn~t~~~ilEELL 54 (55)
T PF09288_consen 8 IDKDLVDQFENMGFERDKVVEVLRRLGIKSMNGVDNETENKILEELL 54 (55)
T ss_dssp -SHHHHHHHHHHT--HHHHHHHHHHS--SS--SS--HHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCccchhHHHHHHHHh
Confidence 678999999997555 445667888753 456678888873
No 290
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=23.03 E-value=6.7e+02 Score=25.15 Aligned_cols=62 Identities=16% Similarity=0.038 Sum_probs=41.6
Q ss_pred ccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeee
Q 004094 401 PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAY 476 (774)
Q Consensus 401 p~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~ 476 (774)
|.-++.+-+.++|+.... .+.+.-+||.|.+.+-.+.|+ -..++|+| |...+-..+.|-|+-
T Consensus 214 PDGm~ID~eG~L~Va~~n----------g~~V~~~dp~tGK~L~eiklP-t~qitscc---FgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 214 PDGMTIDTEGNLYVATFN----------GGTVQKVDPTTGKILLEIKLP-TPQITSCC---FGGKNLDILYVTTAA 275 (310)
T ss_pred CCcceEccCCcEEEEEec----------CcEEEEECCCCCcEEEEEEcC-CCceEEEE---ecCCCccEEEEEehh
Confidence 445555666666665543 357888999999999999997 45567666 433233566666654
No 291
>PF11972 HTH_13: HTH DNA binding domain; InterPro: IPR021068 The proteins in this entry have not been characterised. They contain a C-terminal helix-turn-helix DNA binding domain.
Probab=22.38 E-value=1.5e+02 Score=21.97 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=28.1
Q ss_pred hHHHHHhcCCHHHHHHHHHhcCCCHHHHHHHHHHHh
Q 004094 736 DLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELT 771 (774)
Q Consensus 736 dll~~fl~l~~~~q~~i~~~~~~~~~~i~~~l~~l~ 771 (774)
++++.++.-|--.-..+++.++++++-..+.+++|-
T Consensus 3 ~Lidll~~~P~Vsa~mva~~L~vT~~~A~~li~eLg 38 (54)
T PF11972_consen 3 RLIDLLLSRPLVSAPMVAKELGVTPQAAQRLIAELG 38 (54)
T ss_pred HHHHHHHhCccccHHHHHHHhCCCHHHHHHHHHHhh
Confidence 566667777777778889999999888888887763
No 292
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=22.30 E-value=1.9e+02 Score=25.08 Aligned_cols=38 Identities=16% Similarity=0.321 Sum_probs=29.5
Q ss_pred CCeEEEEecCcEEEEecCCCceeeeEeCCCCCcEEEEEECC
Q 004094 144 YNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANA 184 (774)
Q Consensus 144 ~~~~vQVT~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~ 184 (774)
....++|++++|++++.++.+.+..+.. ..|..+++++
T Consensus 42 ~~v~l~vs~~gv~l~d~~~~~~l~~~~l---~~Is~~~~~~ 79 (123)
T cd00934 42 QKVILSVSSDGVKLIDPKTKEVLASHPI---RRISFCAADP 79 (123)
T ss_pred CEEEEEEEcCcEEEEeCCCCcEEEeecc---ceEEEEECCC
Confidence 4689999999999999987666666633 4688888763
No 293
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=22.28 E-value=1.7e+02 Score=20.41 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=20.3
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCHHHHHHHHH
Q 004094 737 LIESFLDLSRTRMDEISKTMNVSVEELCKRVE 768 (774)
Q Consensus 737 ll~~fl~l~~~~q~~i~~~~~~~~~~i~~~l~ 768 (774)
.|+.+++.. ..+.+||+.+|.++..|.+.|.
T Consensus 12 ~I~~l~~~G-~s~~~IA~~lg~s~sTV~relk 42 (44)
T PF13936_consen 12 QIEALLEQG-MSIREIAKRLGRSRSTVSRELK 42 (44)
T ss_dssp HHHHHHCS----HHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHHCcCcHHHHHHHh
Confidence 456666654 5678899999999999988764
No 294
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=22.14 E-value=3.8e+02 Score=29.14 Aligned_cols=76 Identities=24% Similarity=0.341 Sum_probs=46.3
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCe-eEEecCCCccCceeEEeeee--cCeeEEEEEeCCC
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNL-ITKEHLGGEIIPRSVLLCAF--EGISYLLCALGDG 289 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~-~~~~~l~~~~~p~si~~~~~--~~~~~L~vgl~~G 289 (774)
..+.++.|+++.+.. +..+|-|.. |+++.+|.+.+|.. +++ +.. .-..+.-+++ +....|-.+..||
T Consensus 270 ah~~~vn~~~fnp~~-----~~ilAT~S~-D~tV~LwDlRnL~~~lh~--~e~--H~dev~~V~WSPh~etvLASSg~D~ 339 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFN-----EFILATGSA-DKTVALWDLRNLNKPLHT--FEG--HEDEVFQVEWSPHNETVLASSGTDR 339 (422)
T ss_pred ccCCceeEEEeCCCC-----CceEEeccC-CCcEEEeechhcccCcee--ccC--CCcceEEEEeCCCCCceeEecccCC
Confidence 457899999998743 345555544 99999999998754 221 110 0011111222 1234455677899
Q ss_pred cEEEEEEec
Q 004094 290 HLLNFLLNM 298 (774)
Q Consensus 290 ~l~~y~~~~ 298 (774)
.|.+|.+..
T Consensus 340 rl~vWDls~ 348 (422)
T KOG0264|consen 340 RLNVWDLSR 348 (422)
T ss_pred cEEEEeccc
Confidence 999998764
No 295
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=21.86 E-value=1.5e+02 Score=17.71 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=19.5
Q ss_pred CceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEE
Q 004094 215 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFS 250 (774)
Q Consensus 215 ~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~ 250 (774)
...+.|+++.+ ....++.|.. ++.+.+|+
T Consensus 12 ~~~i~~~~~~~------~~~~~~~~~~-d~~~~~~~ 40 (40)
T smart00320 12 TGPVTSVAFSP------DGKYLASASD-DGTIKLWD 40 (40)
T ss_pred CCceeEEEECC------CCCEEEEecC-CCeEEEcC
Confidence 35678888754 1356666666 88888874
No 296
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=21.59 E-value=2.8e+02 Score=29.68 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=45.4
Q ss_pred CCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCC-eEEEEccCCcEEEEeeCC
Q 004094 563 GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD-IYLGAENNFNLFTVRKNS 626 (774)
Q Consensus 563 ~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~-~~l~~D~~gnl~~l~~~~ 626 (774)
+.+++++|.-|...++-|...+....++..-..++..+++.++.++ .++++|+.|-.+-+....
T Consensus 74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeec
Confidence 4588899999998888888765434444334445556677788765 478899988887777654
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=21.47 E-value=3.2e+02 Score=28.32 Aligned_cols=146 Identities=14% Similarity=0.196 Sum_probs=73.7
Q ss_pred CceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEe--------ecCceeEeccc-----
Q 004094 451 FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE--------TKGAVYSLNAF----- 517 (774)
Q Consensus 451 ~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~--------~~g~v~~i~~~----- 517 (774)
.|.+..+.. +.+.++.++++.|.- -.|.+|.+.++.++++++.. ..||+++..++
T Consensus 85 eEKin~I~w--~~~t~r~hFLlstNd----------ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprl 152 (460)
T COG5170 85 EEKINAIEW--FDDTGRNHFLLSTND----------KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRL 152 (460)
T ss_pred HHHhhheee--ecCCCcceEEEecCC----------ceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccc
Confidence 355665543 444455555555531 36788988887788877543 36788777765
Q ss_pred --cCeEEEEECCEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCC
Q 004094 518 --NGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYN 595 (774)
Q Consensus 518 --~~~lv~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~ 595 (774)
.+.++++.-.+|+ . + .+..++-.+++.......+-+|-.+ +-++.....++++..+---+.
T Consensus 153 s~hd~iiaa~p~rvy--a-----N---------aH~yhiNSiS~NsD~et~lSaDdLr-INLWnl~i~D~sFnIVDiKP~ 215 (460)
T COG5170 153 SEHDEIIAAKPCRVY--A-----N---------AHPYHINSISFNSDKETLLSADDLR-INLWNLEIIDGSFNIVDIKPH 215 (460)
T ss_pred cccceEEEeccceec--c-----c---------cceeEeeeeeecCchheeeecccee-eeeccccccCCceEEEeccCc
Confidence 1234444333332 1 0 0111122334444445555555443 233333344556665522221
Q ss_pred cc-----eeEEEEEeeC--CeEEEEccCCcEEEEeeC
Q 004094 596 AN-----WMSAVEILDD--DIYLGAENNFNLFTVRKN 625 (774)
Q Consensus 596 ~~-----~v~~~~~l~~--~~~l~~D~~gnl~~l~~~ 625 (774)
.. -+++++|-.+ +.+.-+...|+|.+....
T Consensus 216 nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 216 NMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred cHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 11 2344544433 235567778888887764
No 298
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=21.32 E-value=9.6e+02 Score=25.15 Aligned_cols=138 Identities=17% Similarity=0.119 Sum_probs=70.9
Q ss_pred CcceEEEEEEEeCCeEEE-------EEEEeecCceeEecccc-CeEEEEECCEEEEEEeeecCCCch-hhhhhcccccc-
Q 004094 484 PTKGRILVFIVEDGKLQL-------IAEKETKGAVYSLNAFN-GKLLAAINQKIQLYKWMLRDDGTR-ELQSECGHHGH- 553 (774)
Q Consensus 484 ~~~Grl~v~~i~~~kl~~-------~~~~~~~g~v~~i~~~~-~~lv~~~g~~l~v~~~~~~~~~~~-~l~~~~~~~~~- 553 (774)
+.++.|+..+|..+++-. ......++.+.++..++ +..++++..-+++++.+ .+.. .+.....-...
T Consensus 34 ~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~---~~~~~t~~~~~~~~~~~ 110 (307)
T COG3386 34 PDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPD---TGGKITLLAEPEDGLPL 110 (307)
T ss_pred CCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEccccEEEecc---CCceeEEeccccCCCCc
Confidence 345667777776554322 22345677888888874 44777777777766642 2222 22111110000
Q ss_pred eEEEEEEEe-CCEEEEEecc-----cc-----EEEEEEEccCCeEEEEeccCCcceeEEEEEeeC-CeEEEEccC-CcEE
Q 004094 554 ILALYVQTR-GDFIVVGDLM-----KS-----ISLLIYKHEEGAIEERARDYNANWMSAVEILDD-DIYLGAENN-FNLF 620 (774)
Q Consensus 554 ~~~~~l~~~-~~~I~vgD~~-----~S-----v~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~-~~~l~~D~~-gnl~ 620 (774)
..+-...+. ...+++||+- ++ =.+|++++......++..|..--. .+.+--+ .++.++|.. +-++
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N--Gla~SpDg~tly~aDT~~~~i~ 188 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN--GLAFSPDGKTLYVADTPANRIH 188 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC--ceEECCCCCEEEEEeCCCCeEE
Confidence 112223332 3478999998 22 137888875444444443322111 1222222 356688875 6667
Q ss_pred EEeeCC
Q 004094 621 TVRKNS 626 (774)
Q Consensus 621 ~l~~~~ 626 (774)
.+.+++
T Consensus 189 r~~~d~ 194 (307)
T COG3386 189 RYDLDP 194 (307)
T ss_pred EEecCc
Confidence 777663
No 299
>PF13730 HTH_36: Helix-turn-helix domain
Probab=21.30 E-value=1.2e+02 Score=22.14 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhc
Q 004094 748 RMDEISKTMNVSVEELCKRVEELTR 772 (774)
Q Consensus 748 ~q~~i~~~~~~~~~~i~~~l~~l~~ 772 (774)
.+..||+.+|.++..|.+.|.+|..
T Consensus 27 S~~~la~~~g~s~~Tv~~~i~~L~~ 51 (55)
T PF13730_consen 27 SQETLAKDLGVSRRTVQRAIKELEE 51 (55)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3789999999999999999998865
No 300
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=21.29 E-value=1.1e+02 Score=22.77 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhc
Q 004094 746 RTRMDEISKTMNVSVEELCKRVEELTR 772 (774)
Q Consensus 746 ~~~q~~i~~~~~~~~~~i~~~l~~l~~ 772 (774)
.-.-.++|+.+|+|...|.++|..|..
T Consensus 14 ~~s~~ela~~~~VS~~TiRRDl~~L~~ 40 (57)
T PF08220_consen 14 KVSVKELAEEFGVSEMTIRRDLNKLEK 40 (57)
T ss_pred CEEHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 334578999999999999999999864
No 301
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=21.13 E-value=2e+02 Score=21.26 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=27.3
Q ss_pred EEehhHHHHHhcCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 004094 732 FLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEE 769 (774)
Q Consensus 732 ~iDGdll~~fl~l~~~~q~~i~~~~~~~~~~i~~~l~~ 769 (774)
-|.-+-|++|++||. ++.|+.+|++...+.+...+
T Consensus 4 ~lt~~~L~~~fhlp~---~eAA~~Lgv~~T~LKr~CR~ 38 (52)
T PF02042_consen 4 SLTLEDLSQYFHLPI---KEAAKELGVSVTTLKRRCRR 38 (52)
T ss_pred ccCHHHHHHHhCCCH---HHHHHHhCCCHHHHHHHHHH
Confidence 356788999999985 57788999998877766544
No 302
>KOG4143 consensus Sigma receptor and C-8 sterol isomerase [Signal transduction mechanisms]
Probab=21.10 E-value=1.1e+02 Score=28.50 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=29.6
Q ss_pred HHHHHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHhccC
Q 004094 737 LIESFLDLSRTRMDEISKTM----NVSVEELCKRVEELTRLH 774 (774)
Q Consensus 737 ll~~fl~l~~~~q~~i~~~~----~~~~~~i~~~l~~l~~~~ 774 (774)
++.++...++++..+++++. ..+-..+.++|.++.|+|
T Consensus 25 ~l~~~y~Fdp~~l~el~~q~i~l~~~~t~all~di~d~l~~h 66 (218)
T KOG4143|consen 25 LLTQSYVFDPEELAELARQYIGLDANHTLALLRDIVDLLRLH 66 (218)
T ss_pred HcccceeeCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhC
Confidence 34556677888888888876 245678999999999998
No 303
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=21.02 E-value=5.5e+02 Score=27.69 Aligned_cols=123 Identities=12% Similarity=0.026 Sum_probs=62.0
Q ss_pred eEEEEEEEeCCeEEEEEEEee-cCceeEeccccCeEEEEECC--------EEEEEEeeecCCCchhhhhhcccccc----
Q 004094 487 GRILVFIVEDGKLQLIAEKET-KGAVYSLNAFNGKLLAAINQ--------KIQLYKWMLRDDGTRELQSECGHHGH---- 553 (774)
Q Consensus 487 Grl~v~~i~~~kl~~~~~~~~-~g~v~~i~~~~~~lv~~~g~--------~l~v~~~~~~~~~~~~l~~~~~~~~~---- 553 (774)
..+++|+...++.+.+..... .-.-.++..++++|++.-|. .++.++++.+ .. ++.....+...
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~-~~--~W~~~~~~p~~~~~~ 265 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGN-NL--KWQKLPDLPPAPGGS 265 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCC-Cc--ceeecCCCCCCCcCC
Confidence 468888888777776654332 22234555567777655442 2334444321 12 22222221110
Q ss_pred ----eEEEEEEEeCCEEEE-Eecc-------------------cc-EEEEEEEccCCeEEEEeccCCcceeEEEEEeeCC
Q 004094 554 ----ILALYVQTRGDFIVV-GDLM-------------------KS-ISLLIYKHEEGAIEERARDYNANWMSAVEILDDD 608 (774)
Q Consensus 554 ----~~~~~l~~~~~~I~v-gD~~-------------------~S-v~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~ 608 (774)
.......+.++.|+| |-.. +. ..+-.|+.+.++-..++..+.++.-.++..+++.
T Consensus 266 ~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~ 345 (376)
T PRK14131 266 SQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNG 345 (376)
T ss_pred cCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEEEEeCCE
Confidence 011112345665654 4321 11 1233577777777777777777766666666655
Q ss_pred eEEE
Q 004094 609 IYLG 612 (774)
Q Consensus 609 ~~l~ 612 (774)
.++.
T Consensus 346 iyv~ 349 (376)
T PRK14131 346 VLLI 349 (376)
T ss_pred EEEE
Confidence 5443
No 304
>PRK01742 tolB translocation protein TolB; Provisional
Probab=20.74 E-value=1.1e+03 Score=25.93 Aligned_cols=148 Identities=9% Similarity=0.018 Sum_probs=0.0
Q ss_pred eeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEECCE----EEEEEeeecCCCchhhhhhccc
Q 004094 475 AYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQK----IQLYKWMLRDDGTRELQSECGH 550 (774)
Q Consensus 475 ~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g~~----l~v~~~~~~~~~~~~l~~~~~~ 550 (774)
++.......+..++|++.+.+....+.+......-.--+..+-+.+|+++.... |++++ ....+.......
T Consensus 172 a~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~d-----l~tg~~~~l~~~ 246 (429)
T PRK01742 172 AYVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHD-----LRSGARKVVASF 246 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEe-----CCCCceEEEecC
Q ss_pred ccceEEEEEEEeCCEEEEE-eccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccCCcEEEEeeCCC
Q 004094 551 HGHILALYVQTRGDFIVVG-DLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSE 627 (774)
Q Consensus 551 ~~~~~~~~l~~~~~~I~vg-D~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~~ 627 (774)
.........+-.|++|+++ +-.....++.++.+.+.+..+..........+...=....+.++|++|+..++..+..
T Consensus 247 ~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 247 RGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred CCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC
No 305
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=20.48 E-value=65 Score=26.26 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=18.7
Q ss_pred ecChhHHHHHHHHHHHHHhcc
Q 004094 686 SLPHEQYLFLEKLQTNLRKVI 706 (774)
Q Consensus 686 ~l~~~~~~~L~~lq~~l~~~~ 706 (774)
|++|++.+.|..||+++...-
T Consensus 2 ~LSe~E~r~L~eiEr~L~~~D 22 (82)
T PF11239_consen 2 PLSEHEQRRLEEIERQLRADD 22 (82)
T ss_pred CCCHHHHHHHHHHHHHHHhcC
Confidence 789999999999999998753
No 306
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=20.18 E-value=7.8e+02 Score=23.63 Aligned_cols=97 Identities=14% Similarity=0.117 Sum_probs=54.5
Q ss_pred CeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEE
Q 004094 377 GELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCS 456 (774)
Q Consensus 377 ~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~s 456 (774)
..+.+..+. .-.+..++ ......|.++|..+.++++...+ ..+.+.|.|..+++.+.+++-. .++
T Consensus 83 ~~v~lyd~~---~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n-------~~G~l~~wd~~~~~~i~~~~~~---~~t- 147 (194)
T PF08662_consen 83 AKVTLYDVK---GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGN-------LNGDLEFWDVRKKKKISTFEHS---DAT- 147 (194)
T ss_pred cccEEEcCc---ccEeEeec-CCCceEEEECCCCCEEEEEEccC-------CCcEEEEEECCCCEEeeccccC---cEE-
Confidence 345555553 12333333 23445699999999888877653 2357999999988888665422 222
Q ss_pred EEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe
Q 004094 457 ILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE 495 (774)
Q Consensus 457 i~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~ 495 (774)
...| ..+ .+|++..+...+ ......+.+|+..
T Consensus 148 ~~~W--sPd-Gr~~~ta~t~~r----~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 148 DVEW--SPD-GRYLATATTSPR----LRVDNGFKIWSFQ 179 (194)
T ss_pred EEEE--cCC-CCEEEEEEeccc----eeccccEEEEEec
Confidence 2234 333 455665554322 1123455666654
Done!