Query 004094
Match_columns 774
No_of_seqs 167 out of 719
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 14:04:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ei3_A DNA damage-binding prot 100.0 1E-128 4E-133 1176.4 98.6 768 1-774 341-1158(1158)
2 1pgu_A Actin interacting prote 99.2 1.2E-06 4E-11 100.5 53.1 405 153-626 183-614 (615)
3 1nr0_A Actin interacting prote 99.1 3.5E-05 1.2E-09 88.6 61.1 417 153-624 170-609 (611)
4 1pgu_A Actin interacting prote 99.0 4.1E-05 1.4E-09 87.5 52.9 460 152-685 38-611 (615)
5 3sfz_A APAF-1, apoptotic pepti 98.9 2.4E-05 8.1E-10 98.0 49.1 402 175-626 616-1074(1249)
6 3sfz_A APAF-1, apoptotic pepti 98.9 1.6E-05 5.4E-10 99.6 46.2 427 177-685 801-1246(1249)
7 3v7d_B Cell division control p 98.9 4.7E-05 1.6E-09 83.9 43.0 329 177-578 125-458 (464)
8 2ymu_A WD-40 repeat protein; u 98.8 0.00062 2.1E-08 77.1 65.7 385 175-622 181-576 (577)
9 2ymu_A WD-40 repeat protein; u 98.7 0.0011 3.8E-08 75.0 66.3 542 34-683 16-575 (577)
10 3gre_A Serine/threonine-protei 98.6 3.5E-05 1.2E-09 84.3 30.7 258 214-535 62-358 (437)
11 3mkq_A Coatomer beta'-subunit; 98.5 0.00018 6.1E-09 85.5 37.5 269 175-474 14-291 (814)
12 1gxr_A ESG1, transducin-like e 98.5 0.00026 8.8E-09 73.7 33.6 279 210-534 46-335 (337)
13 2ovr_B FBW7, F-BOX/WD repeat p 98.5 0.0012 4.2E-08 72.1 39.7 302 177-535 122-441 (445)
14 1nr0_A Actin interacting prote 98.5 0.0047 1.6E-07 70.6 51.8 461 152-685 38-564 (611)
15 1got_B GT-beta; complex (GTP-b 98.5 0.0005 1.7E-08 72.4 34.2 277 214-532 54-339 (340)
16 4aez_A CDC20, WD repeat-contai 98.4 0.00033 1.1E-08 75.6 32.9 277 179-498 98-382 (401)
17 1sq9_A Antiviral protein SKI8; 98.4 0.0011 3.9E-08 70.8 36.7 288 175-497 17-396 (397)
18 4ery_A WD repeat-containing pr 98.4 0.00039 1.3E-08 71.9 31.8 279 213-534 21-310 (312)
19 4g56_B MGC81050 protein; prote 98.4 4.8E-05 1.6E-09 81.0 25.2 284 213-535 40-342 (357)
20 3zwl_B Eukaryotic translation 98.4 0.0016 5.5E-08 68.4 36.2 287 212-535 29-345 (369)
21 1r5m_A SIR4-interacting protei 98.4 0.00092 3.2E-08 71.9 34.8 270 176-494 110-423 (425)
22 3i2n_A WD repeat-containing pr 98.4 0.00029 1E-08 74.0 30.0 291 175-535 19-352 (357)
23 1r5m_A SIR4-interacting protei 98.4 0.00049 1.7E-08 74.1 32.2 272 215-535 45-360 (425)
24 2ovr_B FBW7, F-BOX/WD repeat p 98.3 0.0011 3.9E-08 72.3 34.4 305 217-583 121-443 (445)
25 1gxr_A ESG1, transducin-like e 98.3 0.0013 4.3E-08 68.3 33.2 273 175-494 52-335 (337)
26 1sq9_A Antiviral protein SKI8; 98.3 0.0014 4.7E-08 70.1 34.2 285 213-535 14-394 (397)
27 4aow_A Guanine nucleotide-bind 98.3 0.00066 2.3E-08 70.7 30.9 280 213-535 36-336 (340)
28 3v7d_B Cell division control p 98.3 0.0033 1.1E-07 68.9 37.9 181 407-622 277-459 (464)
29 3odt_A Protein DOA1; ubiquitin 98.3 0.00082 2.8E-08 69.0 31.0 274 213-535 16-295 (313)
30 3zwl_B Eukaryotic translation 98.3 0.0057 1.9E-07 64.1 37.9 289 175-496 33-346 (369)
31 4aez_A CDC20, WD repeat-contai 98.3 0.0049 1.7E-07 66.3 37.7 261 152-444 112-385 (401)
32 3mmy_A MRNA export factor; mRN 98.3 0.0015 5E-08 68.7 32.8 271 175-476 40-336 (368)
33 2vdu_B TRNA (guanine-N(7)-)-me 98.3 0.0043 1.5E-07 67.9 37.0 241 217-536 104-391 (450)
34 2pbi_B Guanine nucleotide-bind 98.2 0.003 1E-07 66.8 33.3 280 213-532 62-353 (354)
35 3ei3_B DNA damage-binding prot 98.2 0.00095 3.3E-08 71.2 29.6 294 213-534 71-380 (383)
36 1ri6_A Putative isomerase YBHE 98.2 0.0045 1.5E-07 64.3 34.3 290 233-591 4-317 (343)
37 3odt_A Protein DOA1; ubiquitin 98.2 0.0078 2.7E-07 61.5 37.3 271 175-498 19-298 (313)
38 1k8k_C P40, ARP2/3 complex 41 98.2 0.0013 4.6E-08 69.3 30.3 280 214-535 7-360 (372)
39 2ynn_A Coatomer subunit beta'; 98.2 0.0068 2.3E-07 62.3 34.2 278 214-534 12-300 (304)
40 3vl1_A 26S proteasome regulato 98.1 0.005 1.7E-07 66.3 34.1 328 129-534 63-417 (420)
41 4gqb_B Methylosome protein 50; 98.1 0.0015 5.1E-08 68.9 28.5 226 279-535 93-330 (344)
42 1yfq_A Cell cycle arrest prote 98.1 0.00044 1.5E-08 72.3 23.9 263 213-524 9-309 (342)
43 2oaj_A Protein SNI1; WD40 repe 98.1 0.041 1.4E-06 65.9 49.5 110 175-298 18-129 (902)
44 2ynn_A Coatomer subunit beta'; 98.1 0.013 4.5E-07 60.2 35.7 270 175-474 14-291 (304)
45 3mkq_A Coatomer beta'-subunit; 98.1 0.037 1.3E-06 65.2 55.3 382 130-582 63-504 (814)
46 4gga_A P55CDC, cell division c 98.1 0.0023 7.9E-08 69.3 30.0 274 216-535 106-394 (420)
47 3iz6_a 40S ribosomal protein R 98.1 0.00083 2.8E-08 71.9 25.8 285 213-535 64-374 (380)
48 1k8k_C P40, ARP2/3 complex 41 98.1 0.0058 2E-07 64.4 32.0 226 175-416 9-262 (372)
49 3vl1_A 26S proteasome regulato 98.1 0.0048 1.6E-07 66.4 31.8 310 279-625 68-418 (420)
50 3ow8_A WD repeat-containing pr 98.0 0.0032 1.1E-07 65.6 28.8 282 212-534 29-319 (321)
51 3k26_A Polycomb protein EED; W 98.0 0.0058 2E-07 64.0 30.9 267 374-685 41-363 (366)
52 4e54_B DNA damage-binding prot 98.0 8E-05 2.7E-09 81.6 16.5 298 213-534 117-428 (435)
53 4ggc_A P55CDC, cell division c 98.0 0.0041 1.4E-07 63.9 29.0 274 218-534 28-313 (318)
54 2pm9_A Protein WEB1, protein t 98.0 5.8E-05 2E-09 81.6 14.8 288 216-535 13-336 (416)
55 1vyh_C Platelet-activating fac 98.0 0.0089 3E-07 64.5 32.3 275 175-494 109-409 (410)
56 3scy_A Hypothetical bacterial 97.9 0.031 1.1E-06 58.7 35.8 296 279-605 13-360 (361)
57 1p22_A F-BOX/WD-repeat protein 97.9 0.0065 2.2E-07 66.0 29.9 274 215-583 133-415 (435)
58 3i2n_A WD repeat-containing pr 97.9 0.0037 1.3E-07 65.4 27.0 224 376-626 43-291 (357)
59 3k26_A Polycomb protein EED; W 97.9 0.0085 2.9E-07 62.7 29.8 282 174-494 18-364 (366)
60 3lrv_A PRE-mRNA-splicing facto 97.9 0.0017 5.7E-08 68.3 24.1 161 400-588 127-298 (343)
61 2aq5_A Coronin-1A; WD40 repeat 97.9 0.00067 2.3E-08 73.1 21.3 266 243-535 56-341 (402)
62 3jrp_A Fusion protein of prote 97.9 0.0046 1.6E-07 65.2 27.5 245 399-686 12-285 (379)
63 1vyh_C Platelet-activating fac 97.9 0.011 3.9E-07 63.6 30.9 274 214-533 107-408 (410)
64 1l0q_A Surface layer protein; 97.9 0.031 1.1E-06 59.3 33.8 262 153-449 12-285 (391)
65 3dw8_B Serine/threonine-protei 97.9 0.0038 1.3E-07 67.8 26.8 78 214-298 27-126 (447)
66 1yfq_A Cell cycle arrest prote 97.9 0.031 1E-06 57.9 32.8 270 174-476 11-313 (342)
67 3ow8_A WD repeat-containing pr 97.8 0.045 1.5E-06 56.7 36.8 274 176-494 34-319 (321)
68 3hfq_A Uncharacterized protein 97.8 0.047 1.6E-06 56.9 34.7 278 280-592 3-327 (347)
69 1nir_A Nitrite reductase; hemo 97.8 0.042 1.4E-06 61.7 34.6 273 234-535 149-457 (543)
70 3gre_A Serine/threonine-protei 97.8 0.011 3.7E-07 64.1 28.7 222 376-626 85-359 (437)
71 1got_B GT-beta; complex (GTP-b 97.8 0.04 1.4E-06 57.5 32.2 263 175-474 56-331 (340)
72 3mmy_A MRNA export factor; mRN 97.8 0.0055 1.9E-07 64.2 25.6 194 399-627 40-248 (368)
73 2oaj_A Protein SNI1; WD40 repe 97.8 0.13 4.6E-06 61.4 44.1 202 208-445 10-248 (902)
74 1ri6_A Putative isomerase YBHE 97.8 0.053 1.8E-06 56.0 33.6 255 177-459 40-330 (343)
75 4h5i_A Guanine nucleotide-exch 97.8 0.021 7.2E-07 60.5 29.7 291 211-535 10-342 (365)
76 1erj_A Transcriptional repress 97.8 0.066 2.3E-06 57.1 33.9 279 213-535 62-388 (393)
77 4a11_B DNA excision repair pro 97.7 0.041 1.4E-06 58.4 32.0 283 175-498 44-367 (408)
78 1l0q_A Surface layer protein; 97.7 0.072 2.5E-06 56.4 35.8 263 192-500 10-279 (391)
79 4e54_B DNA damage-binding prot 97.7 0.0062 2.1E-07 66.3 25.3 295 174-499 119-433 (435)
80 3frx_A Guanine nucleotide-bind 97.7 0.064 2.2E-06 55.3 33.8 280 213-535 15-316 (319)
81 3jrp_A Fusion protein of prote 97.7 0.039 1.3E-06 57.9 30.5 237 175-419 12-277 (379)
82 2pm9_A Protein WEB1, protein t 97.7 0.0021 7.2E-08 69.1 20.3 269 192-497 43-338 (416)
83 3fm0_A Protein CIAO1; WDR39,SG 97.7 0.08 2.7E-06 55.3 32.3 280 217-535 18-334 (345)
84 4gqb_B Methylosome protein 50; 97.7 0.014 4.8E-07 61.4 25.9 219 375-627 101-332 (344)
85 4ery_A WD repeat-containing pr 97.6 0.078 2.7E-06 54.2 34.3 277 175-494 24-310 (312)
86 4a11_B DNA excision repair pro 97.6 0.074 2.5E-06 56.3 31.8 251 174-445 99-371 (408)
87 3u4y_A Uncharacterized protein 97.6 0.085 2.9E-06 54.3 31.6 284 152-511 19-319 (331)
88 3scy_A Hypothetical bacterial 97.6 0.099 3.4E-06 54.7 36.1 271 233-536 13-337 (361)
89 3bws_A Protein LP49; two-domai 97.6 0.12 4.2E-06 55.4 40.3 294 204-534 111-430 (433)
90 3f3f_A Nucleoporin SEH1; struc 97.6 0.064 2.2E-06 55.1 29.8 79 214-299 10-91 (351)
91 3dm0_A Maltose-binding peripla 97.6 0.1 3.6E-06 60.3 34.5 244 213-499 380-635 (694)
92 3ei3_B DNA damage-binding prot 97.6 0.11 3.8E-06 54.8 33.2 291 175-495 74-381 (383)
93 1p22_A F-BOX/WD-repeat protein 97.6 0.029 9.8E-07 60.9 27.8 219 409-686 142-363 (435)
94 2xzm_R RACK1; ribosome, transl 97.6 0.11 3.7E-06 54.1 36.0 270 185-495 40-339 (343)
95 2vdu_B TRNA (guanine-N(7)-)-me 97.5 0.042 1.4E-06 59.9 28.8 152 461-626 109-271 (450)
96 3fm0_A Protein CIAO1; WDR39,SG 97.5 0.14 4.8E-06 53.4 37.1 285 176-497 18-336 (345)
97 4aow_A Guanine nucleotide-bind 97.5 0.13 4.5E-06 52.8 37.3 279 175-497 39-338 (340)
98 3f3f_A Nucleoporin SEH1; struc 97.5 0.12 4.3E-06 52.8 29.9 201 399-626 12-249 (351)
99 1pby_B Quinohemoprotein amine 97.4 0.027 9.3E-07 58.0 24.2 141 376-534 10-161 (337)
100 2hes_X YDR267CP; beta-propelle 97.4 0.16 5.4E-06 52.6 32.9 286 175-495 15-327 (330)
101 4g56_B MGC81050 protein; prote 97.4 0.0041 1.4E-07 65.8 17.7 218 376-627 114-344 (357)
102 1erj_A Transcriptional repress 97.4 0.084 2.9E-06 56.3 28.2 197 397-626 63-287 (393)
103 3bws_A Protein LP49; two-domai 97.4 0.23 8E-06 53.2 38.1 282 177-495 125-431 (433)
104 3jro_A Fusion protein of prote 97.3 0.025 8.4E-07 66.4 25.2 201 399-627 10-239 (753)
105 1nir_A Nitrite reductase; hemo 97.3 0.32 1.1E-05 54.4 33.2 323 152-500 158-518 (543)
106 4h5i_A Guanine nucleotide-exch 97.3 0.04 1.4E-06 58.3 23.8 199 401-627 136-344 (365)
107 3vu4_A KMHSV2; beta-propeller 97.2 0.072 2.5E-06 55.9 25.3 229 398-686 19-269 (355)
108 3dwl_C Actin-related protein 2 97.2 0.0047 1.6E-07 65.4 16.1 231 215-474 11-270 (377)
109 3frx_A Guanine nucleotide-bind 97.2 0.25 8.4E-06 50.8 37.6 275 175-495 18-316 (319)
110 4ggc_A P55CDC, cell division c 97.2 0.23 8E-06 50.3 33.5 267 185-495 37-314 (318)
111 3u4y_A Uncharacterized protein 97.2 0.28 9.6E-06 50.3 33.1 266 233-535 9-303 (331)
112 3vu4_A KMHSV2; beta-propeller 97.1 0.28 9.4E-06 51.4 27.5 149 137-298 103-271 (355)
113 2aq5_A Coronin-1A; WD40 repeat 97.0 0.058 2E-06 57.6 22.3 200 399-626 132-342 (402)
114 3dm0_A Maltose-binding peripla 97.0 0.71 2.4E-05 53.2 33.2 234 175-437 431-691 (694)
115 2hes_X YDR267CP; beta-propelle 97.0 0.39 1.3E-05 49.6 32.2 220 376-625 33-279 (330)
116 1q7f_A NHL, brain tumor CG1071 97.0 0.28 9.5E-06 49.3 26.3 199 400-627 78-281 (286)
117 3vgz_A Uncharacterized protein 97.0 0.41 1.4E-05 49.4 33.5 227 215-475 88-333 (353)
118 1jmx_B Amine dehydrogenase; ox 97.0 0.34 1.2E-05 49.9 27.3 67 371-449 269-335 (349)
119 4gga_A P55CDC, cell division c 97.0 0.54 1.8E-05 50.3 34.6 260 151-439 123-395 (420)
120 1qks_A Cytochrome CD1 nitrite 97.0 0.71 2.4E-05 51.7 32.6 277 233-535 166-476 (567)
121 2xyi_A Probable histone-bindin 96.9 0.11 3.7E-06 56.2 23.7 254 205-495 118-409 (430)
122 1pby_B Quinohemoprotein amine 96.9 0.29 1E-05 50.0 25.7 259 152-449 10-320 (337)
123 3bg1_A Protein SEC13 homolog; 96.9 0.41 1.4E-05 49.0 26.6 117 175-298 14-136 (316)
124 3dw8_B Serine/threonine-protei 96.9 0.13 4.3E-06 55.5 23.6 199 399-626 29-315 (447)
125 3iz6_a 40S ribosomal protein R 96.9 0.19 6.6E-06 53.1 24.3 283 175-496 67-375 (380)
126 3dwl_C Actin-related protein 2 96.9 0.067 2.3E-06 56.3 20.6 183 370-580 69-279 (377)
127 3vgz_A Uncharacterized protein 96.8 0.56 1.9E-05 48.3 31.9 213 381-625 71-302 (353)
128 2pm7_B Protein transport prote 96.8 0.087 3E-06 53.6 20.6 245 400-687 11-284 (297)
129 2pm7_B Protein transport prote 96.8 0.51 1.7E-05 47.7 28.3 243 175-438 10-284 (297)
130 3jro_A Fusion protein of prote 96.8 0.068 2.3E-06 62.7 21.9 231 370-626 23-285 (753)
131 3ei3_A DNA damage-binding prot 96.6 2.1 7E-05 52.3 64.9 174 486-687 806-998 (1158)
132 2pbi_B Guanine nucleotide-bind 96.6 0.82 2.8E-05 47.6 31.7 244 154-419 87-347 (354)
133 2xzm_R RACK1; ribosome, transl 96.6 0.87 3E-05 47.1 33.1 235 175-437 77-338 (343)
134 3dsm_A Uncharacterized protein 96.6 0.53 1.8E-05 48.6 24.6 263 153-448 17-310 (328)
135 3hfq_A Uncharacterized protein 96.6 0.87 3E-05 47.0 34.0 225 194-443 63-323 (347)
136 3sjl_D Methylamine dehydrogena 96.5 1.1 3.9E-05 47.2 31.5 270 213-514 76-379 (386)
137 3no2_A Uncharacterized protein 96.4 0.83 2.9E-05 45.8 24.1 223 368-627 4-252 (276)
138 2xyi_A Probable histone-bindin 96.4 0.15 5E-06 55.2 19.5 206 392-626 122-353 (430)
139 3bg1_A Protein SEC13 homolog; 96.1 0.3 1E-05 50.1 19.4 245 399-685 14-290 (316)
140 1jof_A Carboxy-CIS,CIS-muconat 96.1 1.4 4.8E-05 46.0 24.8 231 395-649 79-356 (365)
141 1jmx_B Amine dehydrogenase; ox 96.0 1.7 5.7E-05 44.5 24.9 143 376-534 20-173 (349)
142 3lrv_A PRE-mRNA-splicing facto 95.8 2.1 7.3E-05 44.0 31.8 137 152-298 103-244 (343)
143 3dsm_A Uncharacterized protein 95.8 2.1 7.3E-05 43.9 27.7 235 145-407 54-320 (328)
144 2hqs_A Protein TOLB; TOLB, PAL 95.2 3.6 0.00012 43.8 24.2 218 377-625 159-386 (415)
145 2z2n_A Virginiamycin B lyase; 94.9 3.3 0.00011 41.1 24.9 191 398-625 98-294 (299)
146 3q7m_A Lipoprotein YFGL, BAMB; 94.5 5.2 0.00018 41.6 25.1 122 431-578 250-374 (376)
147 1q7f_A NHL, brain tumor CG1071 94.3 4.6 0.00016 40.0 26.6 194 400-623 31-235 (286)
148 2j04_B YDR362CP, TAU91; beta p 94.3 2.8 9.6E-05 46.4 21.0 224 243-495 182-427 (524)
149 3sjl_D Methylamine dehydrogena 94.2 6.6 0.00022 41.3 29.8 268 153-449 59-373 (386)
150 3c75_H MADH, methylamine dehyd 94.1 7.3 0.00025 41.6 24.5 265 153-446 99-409 (426)
151 2ojh_A Uncharacterized protein 93.9 2.4 8.2E-05 41.7 18.1 191 370-587 55-261 (297)
152 1jof_A Carboxy-CIS,CIS-muconat 93.9 6.8 0.00023 40.6 35.4 292 280-606 3-365 (365)
153 3e5z_A Putative gluconolactona 93.9 5.7 0.0002 39.6 21.0 100 399-524 28-131 (296)
154 3c75_H MADH, methylamine dehyd 93.4 9.6 0.00033 40.7 30.2 271 195-499 100-405 (426)
155 2oiz_A Aromatic amine dehydrog 93.4 8.5 0.00029 40.0 28.2 65 380-457 287-353 (361)
156 3q7m_A Lipoprotein YFGL, BAMB; 93.3 8.6 0.0003 39.9 31.0 134 153-303 63-210 (376)
157 2j04_A TAU60, YPL007P, hypothe 93.2 2.5 8.7E-05 46.8 17.5 188 399-624 86-295 (588)
158 2iwa_A Glutamine cyclotransfer 92.8 8.2 0.00028 38.2 21.3 165 391-586 11-183 (266)
159 2j04_A TAU60, YPL007P, hypothe 92.3 1.4 4.7E-05 48.9 13.8 109 400-534 131-252 (588)
160 2j04_B YDR362CP, TAU91; beta p 92.2 2.2 7.4E-05 47.3 15.6 216 376-625 182-427 (524)
161 2qc5_A Streptogramin B lactona 91.9 10 0.00035 37.3 20.4 198 392-624 10-216 (300)
162 2w18_A PALB2, fancn, partner a 91.7 14 0.00046 38.2 21.0 61 184-251 295-355 (356)
163 3e5z_A Putative gluconolactona 91.0 8.9 0.00031 38.1 17.8 204 399-626 69-286 (296)
164 2z2n_A Virginiamycin B lyase; 89.7 16 0.00056 35.8 28.0 191 399-624 57-253 (299)
165 2ece_A 462AA long hypothetical 88.5 29 0.00099 37.1 20.1 146 152-306 227-432 (462)
166 2mad_H Methylamine dehydrogena 88.4 26 0.0009 36.4 33.4 57 381-445 300-356 (373)
167 2oiz_A Aromatic amine dehydrog 88.3 25 0.00087 36.2 29.3 262 213-514 48-353 (361)
168 3nol_A Glutamine cyclotransfer 88.0 21 0.00073 35.0 20.1 165 391-587 33-204 (262)
169 4gq1_A NUP37; propeller, trans 88.0 28 0.00095 36.3 23.4 109 186-298 103-218 (393)
170 2qc5_A Streptogramin B lactona 87.9 21 0.00073 34.9 23.2 156 399-590 104-265 (300)
171 3g4e_A Regucalcin; six bladed 87.5 24 0.00082 35.0 27.4 187 393-605 48-249 (297)
172 2z3z_A Dipeptidyl aminopeptida 87.5 43 0.0015 37.9 29.1 238 370-625 134-434 (706)
173 3m0c_C LDL receptor, low-densi 86.8 52 0.0018 38.1 22.2 132 485-623 491-629 (791)
174 1fwx_A Nitrous oxide reductase 86.5 24 0.00083 39.1 18.0 132 371-515 290-450 (595)
175 2oit_A Nucleoporin 214KDA; NH2 86.3 4.7 0.00016 43.2 12.3 123 392-534 86-221 (434)
176 1mda_H Methylamine dehydrogena 86.2 34 0.0012 35.5 19.2 263 154-450 47-357 (368)
177 2vpj_A Kelch-like protein 12; 85.9 20 0.00069 35.6 16.3 164 431-613 79-260 (301)
178 2ojh_A Uncharacterized protein 85.0 29 0.00098 33.5 31.9 106 399-517 173-280 (297)
179 1xip_A Nucleoporin NUP159; bet 84.8 15 0.00052 38.5 15.0 132 145-298 50-191 (388)
180 2oit_A Nucleoporin 214KDA; NH2 84.6 36 0.0012 36.2 18.4 70 175-252 150-222 (434)
181 1xip_A Nucleoporin NUP159; bet 83.9 10 0.00035 39.9 13.1 129 370-535 50-190 (388)
182 1qks_A Cytochrome CD1 nitrite 83.8 58 0.002 36.1 32.6 104 152-259 176-281 (567)
183 2hqs_A Protein TOLB; TOLB, PAL 83.8 46 0.0016 34.9 28.8 93 400-515 312-404 (415)
184 4a2l_A BT_4663, two-component 83.3 72 0.0025 36.8 45.5 158 400-591 407-578 (795)
185 2dg1_A DRP35, lactonase; beta 83.0 40 0.0014 33.7 26.0 154 400-579 46-210 (333)
186 4gq1_A NUP37; propeller, trans 82.6 49 0.0017 34.3 22.5 65 233-298 101-175 (393)
187 1rwi_B Serine/threonine-protei 82.3 36 0.0012 32.7 18.3 243 395-690 20-266 (270)
188 3hrp_A Uncharacterized protein 81.6 56 0.0019 34.3 19.9 181 383-592 156-362 (409)
189 3mbr_X Glutamine cyclotransfer 81.5 40 0.0014 32.6 20.9 164 392-587 12-182 (243)
190 3nok_A Glutaminyl cyclase; bet 81.4 43 0.0015 32.9 16.5 162 391-587 45-213 (268)
191 1dul_A Signal recognition part 79.9 2.1 7.1E-05 32.5 4.2 29 745-773 34-62 (69)
192 1ijq_A LDL receptor, low-densi 79.0 56 0.0019 32.8 24.7 219 370-623 3-235 (316)
193 2ecf_A Dipeptidyl peptidase IV 78.7 94 0.0032 35.2 29.2 118 400-535 288-412 (741)
194 3p5b_L Low density lipoprotein 78.4 69 0.0024 33.5 25.3 223 370-623 85-317 (400)
195 3fvz_A Peptidyl-glycine alpha- 78.1 60 0.002 32.6 18.4 185 399-604 24-248 (329)
196 3g4e_A Regucalcin; six bladed 77.5 58 0.002 32.1 26.4 153 401-587 15-185 (297)
197 3mbr_X Glutamine cyclotransfer 77.3 54 0.0019 31.7 15.8 117 499-625 9-132 (243)
198 2p4o_A Hypothetical protein; p 77.0 61 0.0021 32.2 20.8 206 381-616 55-278 (306)
199 2ecf_A Dipeptidyl peptidase IV 76.6 1.1E+02 0.0037 34.7 29.1 204 370-591 165-422 (741)
200 2xn4_A Kelch-like protein 2; s 76.5 62 0.0021 31.9 16.5 135 467-613 62-211 (302)
201 3v65_B Low-density lipoprotein 76.5 76 0.0026 32.9 22.1 64 556-622 250-314 (386)
202 1npe_A Nidogen, entactin; glyc 76.4 57 0.002 31.5 25.3 192 399-624 36-236 (267)
203 4asc_A Kelch repeat and BTB do 75.6 63 0.0022 32.2 15.8 139 467-612 46-202 (315)
204 2xn4_A Kelch-like protein 2; s 75.6 65 0.0022 31.7 17.0 135 467-613 109-258 (302)
205 3fvz_A Peptidyl-glycine alpha- 75.4 70 0.0024 32.1 20.9 105 400-527 144-259 (329)
206 2z3z_A Dipeptidyl aminopeptida 74.4 1.2E+02 0.004 34.2 33.6 67 176-253 83-150 (706)
207 4asc_A Kelch repeat and BTB do 74.2 73 0.0025 31.7 21.8 226 371-612 7-249 (315)
208 3ii7_A Kelch-like protein 7; p 73.9 72 0.0025 31.5 17.3 166 430-613 70-254 (306)
209 2vpj_A Kelch-like protein 12; 73.0 75 0.0026 31.2 18.6 160 429-605 127-299 (301)
210 3sov_A LRP-6, low-density lipo 72.9 82 0.0028 31.7 20.8 129 486-624 100-236 (318)
211 2mad_H Methylamine dehydrogena 72.5 93 0.0032 32.1 34.1 82 404-499 272-353 (373)
212 3v64_C Agrin; beta propeller, 72.2 90 0.0031 31.8 23.8 127 487-623 138-272 (349)
213 1zgk_A Kelch-like ECH-associat 71.0 47 0.0016 33.1 13.4 139 467-613 71-222 (308)
214 3dr2_A Exported gluconolactona 68.3 95 0.0033 30.6 18.6 106 485-605 167-285 (305)
215 3ii7_A Kelch-like protein 7; p 68.1 70 0.0024 31.6 14.0 162 431-612 25-206 (306)
216 1hq1_A Signal recognition part 68.0 4.7 0.00016 33.4 3.9 29 745-773 68-96 (105)
217 3hrp_A Uncharacterized protein 67.3 1.2E+02 0.0043 31.5 18.7 157 400-585 132-299 (409)
218 2ghs_A AGR_C_1268P; regucalcin 65.3 1.2E+02 0.0039 30.4 29.3 184 393-605 84-279 (326)
219 2woz_A Kelch repeat and BTB do 64.7 59 0.002 32.5 12.7 138 467-611 57-211 (318)
220 3nok_A Glutaminyl cyclase; bet 64.1 1.1E+02 0.0039 29.9 17.6 89 371-474 148-254 (268)
221 3v9f_A Two-component system se 64.0 2E+02 0.007 32.8 43.2 143 466-625 322-477 (781)
222 3nol_A Glutamine cyclotransfer 63.1 1.2E+02 0.004 29.7 21.4 181 235-436 54-256 (262)
223 2jqe_A SRP54, signal recogniti 62.5 6.6 0.00022 33.3 3.8 29 745-773 77-105 (119)
224 1zgk_A Kelch-like ECH-associat 62.2 73 0.0025 31.6 12.7 134 467-612 122-268 (308)
225 1qb2_A SRP54, human signal rec 59.3 7.2 0.00025 32.5 3.5 28 746-773 75-102 (109)
226 3s94_A LRP-6, low-density lipo 59.1 2.2E+02 0.0076 31.6 21.6 222 370-625 11-242 (619)
227 3hxj_A Pyrrolo-quinoline quino 57.4 1.5E+02 0.0051 29.1 15.3 160 431-623 118-281 (330)
228 2w18_A PALB2, fancn, partner a 57.1 1.8E+02 0.006 29.9 21.7 188 376-580 156-355 (356)
229 2uvk_A YJHT; unknown function, 56.5 89 0.0031 31.6 12.5 59 467-526 66-126 (357)
230 1mfq_C SRP54, signal recogniti 56.5 8.5 0.00029 33.1 3.5 29 745-773 87-115 (129)
231 3v9f_A Two-component system se 55.9 2.7E+02 0.0094 31.7 46.9 137 431-591 384-531 (781)
232 2ece_A 462AA long hypothetical 54.6 2.2E+02 0.0076 30.3 26.5 56 243-298 227-289 (462)
233 3ott_A Two-component system se 53.7 2.9E+02 0.0099 31.4 22.0 114 451-590 62-180 (758)
234 2dg1_A DRP35, lactonase; beta 53.7 1.7E+02 0.0059 28.7 26.3 176 396-591 84-270 (333)
235 4a0p_A LRP6, LRP-6, low-densit 53.3 2.7E+02 0.0094 30.9 25.1 220 370-624 8-235 (628)
236 2fp8_A Strictosidine synthase; 53.2 1.8E+02 0.0061 28.8 20.9 134 485-625 163-312 (322)
237 2ghs_A AGR_C_1268P; regucalcin 51.4 1.9E+02 0.0067 28.7 16.9 140 466-625 60-209 (326)
238 3dr2_A Exported gluconolactona 51.3 1.8E+02 0.0063 28.4 20.8 97 401-524 47-147 (305)
239 1mda_H Methylamine dehydrogena 51.0 94 0.0032 32.1 11.4 69 380-449 47-115 (368)
240 2qe8_A Uncharacterized protein 50.6 2.1E+02 0.007 28.7 16.1 49 564-613 259-307 (343)
241 2p4o_A Hypothetical protein; p 50.0 1.5E+02 0.005 29.3 12.6 119 499-625 22-146 (306)
242 3no2_A Uncharacterized protein 49.3 1.9E+02 0.0066 28.0 22.3 192 233-447 5-203 (276)
243 1npe_A Nidogen, entactin; glyc 46.0 2E+02 0.0069 27.3 21.3 159 399-587 79-241 (267)
244 3sre_A PON1, serum paraoxonase 45.0 2.7E+02 0.0092 28.4 16.2 154 468-626 61-252 (355)
245 1pjx_A Dfpase, DIISOPROPYLFLUO 44.6 2.3E+02 0.0077 27.4 23.8 108 400-526 19-135 (314)
246 1sfu_A 34L protein; protein/Z- 39.4 25 0.00086 26.9 3.3 31 742-772 22-55 (75)
247 3m0c_C LDL receptor, low-densi 37.7 5.2E+02 0.018 29.7 25.3 154 399-582 471-630 (791)
248 1ijq_A LDL receptor, low-densi 36.7 3.2E+02 0.011 26.9 24.9 157 399-583 77-237 (316)
249 1n7d_A LDL receptor, low-densi 34.2 27 0.00094 39.9 4.3 127 485-623 473-611 (699)
250 3hxj_A Pyrrolo-quinoline quino 33.3 3.4E+02 0.012 26.3 12.9 125 153-297 195-323 (330)
251 2woz_A Kelch repeat and BTB do 32.8 3.6E+02 0.012 26.4 22.7 167 431-612 79-259 (318)
252 3qqz_A Putative uncharacterize 32.1 3.5E+02 0.012 26.0 23.2 190 213-416 24-241 (255)
253 1flg_A Protein (quinoprotein e 31.6 5.5E+02 0.019 28.1 18.0 86 404-499 251-358 (582)
254 2iwa_A Glutamine cyclotransfer 30.6 3.8E+02 0.013 26.0 25.0 189 210-420 13-227 (266)
255 3tc9_A Hypothetical hydrolase; 29.2 4.5E+02 0.015 27.4 12.7 132 487-625 159-300 (430)
256 2hz6_A Endoplasmic reticulum t 29.2 48 0.0016 34.2 4.8 55 467-534 9-66 (369)
257 2cy5_A Epidermal growth factor 28.7 2.9E+02 0.0098 24.0 8.8 56 144-202 49-115 (140)
258 1xn7_A Hypothetical protein YH 26.1 42 0.0014 26.0 2.7 29 744-772 14-42 (78)
259 1xfd_A DIP, dipeptidyl aminope 25.7 5.1E+02 0.017 28.7 13.3 200 401-625 63-341 (723)
260 3o4h_A Acylamino-acid-releasin 24.8 6.7E+02 0.023 26.9 21.5 94 488-588 133-231 (582)
261 3v65_B Low-density lipoprotein 24.0 5.8E+02 0.02 25.9 23.2 89 486-582 224-316 (386)
262 2fi2_A Zinc finger protein 42; 23.4 1.2E+02 0.004 24.3 4.8 42 731-772 48-90 (94)
263 2k02_A Ferrous iron transport 22.5 51 0.0018 26.1 2.6 29 744-772 14-42 (87)
264 3f7f_A Nucleoporin NUP120; nuc 22.4 2.3E+02 0.0079 32.1 8.8 77 178-263 165-260 (729)
265 1qgp_A Protein (double strande 21.9 30 0.001 26.7 1.1 39 734-772 16-57 (77)
266 2uvk_A YJHT; unknown function, 21.7 2.4E+02 0.0081 28.3 8.6 122 487-611 168-321 (357)
267 2hin_A GP39, repressor protein 20.3 98 0.0034 23.3 3.7 29 736-769 5-33 (71)
268 3sov_A LRP-6, low-density lipo 20.3 6.3E+02 0.021 24.9 15.6 66 558-625 128-196 (318)
No 1
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=100.00 E-value=1.2e-128 Score=1176.44 Aligned_cols=768 Identities=56% Similarity=0.928 Sum_probs=704.7
Q ss_pred CccceecCceEEEeecCCCCCCCcEEEeeeccCcCcccceEEecCCCCCCCeEEEEEecCCCCcEEEEecCCceeEEEee
Q 004094 1 MLTFYVLPKQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASV 80 (774)
Q Consensus 1 ~~~~~~gds~l~~~~~~~~~~~s~~~~~~~~~n~~Pi~D~~v~~~~~~~~~~l~~~sG~g~~g~L~~lr~gi~~~~~~~~ 80 (774)
|+||++|||+|+|+...++...+|++++|+++|||||+||++++..++++++|++|||+|++|+|+++|+|++++++++.
T Consensus 341 FvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~~~ 420 (1158)
T 3ei3_A 341 FVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASI 420 (1158)
T ss_dssp EEECSSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEEEE
T ss_pred EEEEecCCcEEEEEecCCCCccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEEee
Confidence 78999999999999988776778899999999999999999999877788999999999999999999999999999999
Q ss_pred eCCCcceeeeeecCCCCCCceEEEEEecCceEEEEecCCCCeeeeeecCccccCcceeeeecCCCeEEEEecCcEEEEec
Q 004094 81 ELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSS 160 (774)
Q Consensus 81 ~l~~~~~iw~~~~~~~~~~~~~li~S~~~~T~vl~~~~~~~~~e~~~~~f~~~~~Tl~~~~~~~~~~vQVT~~~i~l~~~ 160 (774)
++||++++|+++...++++|.||++|++++|+||+++++ +++|++++||.++++||+|++++++.+||||+++||+++.
T Consensus 421 ~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~ 499 (1158)
T 3ei3_A 421 DLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGE-EVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQ 499 (1158)
T ss_dssp CCCSCCEEEEECCCSSCSSCCEEEEEETTEEEEEEEETT-EEEEECCTTCCSSSCEEEEEEETTTEEEEEESSCEEEEES
T ss_pred cCCCccEEEEEeecCCCCCCCEEEEECCCCeEEEEEeCC-cccccccccccCCCCcEEEEEcCCCeEEEEecCEEEEEEC
Confidence 999999999999765667899999999999999999764 7999999999999999999999999999999999999998
Q ss_pred CCCceeeeEeCCCCCcEEEEEECCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEE
Q 004094 161 TSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGM 240 (774)
Q Consensus 161 ~~~~~~~~~~~~~~~~I~~a~~~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~ 240 (774)
+....+++|.+|.|.+|++|++++.+++++. +++++||+++++++.+..+.+++.+|+|+++.+.+++...+.+++||+
T Consensus 500 ~~~~~~~~w~~p~~~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~ 578 (1158)
T 3ei3_A 500 EPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGL 578 (1158)
T ss_dssp SSCCEEEEECCTTCCCCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEE
Confidence 7666899999999999999999999999995 889999999988888888899999999999988776666789999999
Q ss_pred ecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEE
Q 004094 241 WTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRT 320 (774)
Q Consensus 241 ~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~ 320 (774)
|.+++++||+|++++.++.+.++.+..|+|+++..+++..+|++|++||.++.|.++..+|.+.+.|++.+|++|++|++
T Consensus 579 ~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~ 658 (1158)
T 3ei3_A 579 WTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRT 658 (1158)
T ss_dssp TTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEE
T ss_pred CCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEE
Confidence 99999999999999999999998778999999999988899999999999999999998899999999999999999999
Q ss_pred EEeCCcceEEEecCCCeEEEecCCcEEEeeecccCceeeecccCCCCCCcEEEEeCCeEEEEEEcCCCCeEEEEEeCCCc
Q 004094 321 FSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEH 400 (774)
Q Consensus 321 ~~~~~~~~v~~~~~~p~~l~~~~~~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~t 400 (774)
+...+..+||++|++||++|.+++++.++|++..++.++++|++++||+++++++++.|+|+++++.++|++++|||++|
T Consensus 659 ~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ipL~~T 738 (1158)
T 3ei3_A 659 FRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES 738 (1158)
T ss_dssp EESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEECSSE
T ss_pred EeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEeCCCC
Confidence 98777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCEEEEEEeccC---CC------------------------------------CCceeeeEEEEEECCCce
Q 004094 401 PRRICHQEQSRTFAICSLKNQ---SC------------------------------------AEESEMHFVRLLDDQTFE 441 (774)
Q Consensus 401 p~~i~y~~~~~~~~v~~~~~~---~~------------------------------------~~~~~~~~l~l~d~~~~~ 441 (774)
|||++|||++++|+|++++.+ .. +.+.+.++++++||.+|+
T Consensus 739 prri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~ 818 (1158)
T 3ei3_A 739 PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFE 818 (1158)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCC
T ss_pred ceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCe
Confidence 999999999999999997742 10 112468999999999999
Q ss_pred EEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeE
Q 004094 442 FISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKL 521 (774)
Q Consensus 442 ~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~l 521 (774)
++++++|+++|.++|++.+.|.+++++|++|||++..++|+.+++|||++|++.++||+++++++++|+|+|+++++|+|
T Consensus 819 ~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~L 898 (1158)
T 3ei3_A 819 VLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKL 898 (1158)
T ss_dssp EEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEETTEE
T ss_pred EEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCCEE
Confidence 99999999999999999999988778999999999998899999999999999999999999999999999999999999
Q ss_pred EEEECCEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEE
Q 004094 522 LAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSA 601 (774)
Q Consensus 522 v~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~ 601 (774)
++|+|++|++|+|..+ +.|...+.....+.++++++.||+|+|||+++|+++++|++++++|.++|||+.++|+++
T Consensus 899 la~ig~~l~vy~l~~~----~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta 974 (1158)
T 3ei3_A 899 LASINSTVRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSA 974 (1158)
T ss_dssp EEEETTEEEEEEECTT----SCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEE
T ss_pred EEEcCCEEEEEECCCC----ceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEE
Confidence 9999999999998521 223312221122346789999999999999999999999999999999999999999999
Q ss_pred EEEeeCCeEEEEccCCcEEEEeeCCCCCCccccceeeeEEEEEcCcccceEEeeeeeecCC-CCCCCCccEEEEEccccc
Q 004094 602 VEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP-DSDVGQIPTVIFGTVNGV 680 (774)
Q Consensus 602 ~~~l~~~~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~-~~~~~~~~~il~~t~~Gs 680 (774)
+++|++++++++|++||++++++++++.++.++++|+..++||+|+.||+|+++++.+..+ +......+.++|+|.+|+
T Consensus 975 ~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~Gs 1054 (1158)
T 3ei3_A 975 VEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGM 1054 (1158)
T ss_dssp EEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSC
T ss_pred EEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCE
Confidence 9999999999999999999999999888888889999999999999999999998875432 222335678999999999
Q ss_pred eEEEEecChhHHHHHHHHHHHHHhcccCCCCCCcccccccccCcccCCCCcEEehhHHHHHhcCCHHHHHHHHHhcC---
Q 004094 681 IGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN--- 757 (774)
Q Consensus 681 i~~i~~l~~~~~~~L~~lq~~l~~~~~~~~gl~~~~~R~~~~~~~~~~~~~~iDGdll~~fl~l~~~~q~~i~~~~~--- 757 (774)
||.+.|++++.|++|..||++|+..++++||++|++||+++++.+..|+++|||||||++|++|+.++|++||++++
T Consensus 1055 Ig~l~pl~~~~~~~L~~Lq~~l~~~~~~~~gl~~~~~Rs~~~~~~~~~~~~~iDGdLle~fl~L~~~~q~~ia~~l~~~~ 1134 (1158)
T 3ei3_A 1055 IGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDD 1134 (1158)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHSCCTTSCCHHHHHSEECSSCEECCBSEEEHHHHHGGGGSCHHHHHHHCCCC----
T ss_pred EEEEEEcCHHHHHHHHHHHHHHHhhCCCCcCCCHHHhhCeecccccCCCCccCcHHHHHHHHcCCHHHHHHHHHhhCccc
Confidence 99999999999999999999999999999999999999999876667889999999999999999999999999997
Q ss_pred -------CCHHHHHHHHHHHhccC
Q 004094 758 -------VSVEELCKRVEELTRLH 774 (774)
Q Consensus 758 -------~~~~~i~~~l~~l~~~~ 774 (774)
.+++||.++||+|+|||
T Consensus 1135 ~~~~~~~~t~~ei~k~~e~l~r~h 1158 (1158)
T 3ei3_A 1135 GSGMKREATADDLIKVVEELTRIH 1158 (1158)
T ss_dssp --------CCHHHHHHHHHHGGGC
T ss_pred cccccCCCCHHHHHHHHHHHhhcC
Confidence 58999999999999999
No 2
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.25 E-value=1.2e-06 Score=100.49 Aligned_cols=405 Identities=15% Similarity=0.126 Sum_probs=228.9
Q ss_pred CcEEEEecCCCceeeeEeCCCC--CcEEEEEEC---CCEEEEEEcCCeEEEEEEcCceEEEEEec---cCCceeEEEEeC
Q 004094 153 GSVRLVSSTSRELRNEWKSPPG--YSVNVATAN---ASQVLLATGGGHLVYLEIGDGILTEVKHA---QLEYEISCLDIN 224 (774)
Q Consensus 153 ~~i~l~~~~~~~~~~~~~~~~~--~~I~~a~~~---~~~lvv~~~~~~~~~~~~~~~~l~~~~~~---~l~~~is~l~~~ 224 (774)
..|++++.+..+.+..+....+ ..|.+.+.+ +..++.+..++.+..+.+..++....-.. .....|.++++.
T Consensus 183 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 262 (615)
T 1pgu_A 183 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 262 (615)
T ss_dssp TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES
T ss_pred CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc
Confidence 5677788776555555543221 168888765 34677777778888888766554333212 566789999885
Q ss_pred CCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCc---cCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCC
Q 004094 225 PIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGE---IIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTG 301 (774)
Q Consensus 225 ~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~---~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~ 301 (774)
. ..+++.+.. ++.+.+|++.+.+.+........ ..+.++.. .+..++++|..+|.+..|.+.. +
T Consensus 263 --~-----~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~g~i~~~d~~~--~ 329 (615)
T 1pgu_A 263 --D-----SQKFATVGA-DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA---TGNGRIISLSLDGTLNFYELGH--D 329 (615)
T ss_dssp --S-----SSEEEEEET-TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE---EETTEEEEEETTSCEEEEETTE--E
T ss_pred --C-----CCEEEEEcC-CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe---CCCCeEEEEECCCCEEEEECCC--C
Confidence 1 467777777 99999999988766554333311 11222222 2356799999999999987543 1
Q ss_pred ccccceeeecCCCCeEEEEEEeCCcceEEEecCCCeEEEecCCcEEEeeecccCceeeecccCCCCCCcEEEE-eCCeEE
Q 004094 302 ELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIA-KEGELT 380 (774)
Q Consensus 302 ~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~~~~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~-~~~~l~ 380 (774)
.. .+...-...++.-. .. .. ++..+..-.+...+-..+. .-....+.+++- .. .+.++.. .++.++
T Consensus 330 ~~--~~~~~~~~~~v~~~--~~-~~--l~~~~~dg~i~~w~~~~~~--~~~~~~v~~~~~-~~---~~~l~~~~~d~~i~ 396 (615)
T 1pgu_A 330 EV--LKTISGHNKGITAL--TV-NP--LISGSYDGRIMEWSSSSMH--QDHSNLIVSLDN-SK---AQEYSSISWDDTLK 396 (615)
T ss_dssp EE--EEEECCCSSCEEEE--ET-TT--TEEEETTSCEEETTTTEEE--CCCCSCEEEEEC-CS---TTCCEEEETTTEEE
T ss_pred cE--EEEEeCCCCCEEEE--Ee-cC--cEEECCCCeEEEEEchhhc--CcccCceEEEEE-CC---CcEEEEEeCCCCEE
Confidence 11 11111112232221 21 11 2222222222222111221 112233433332 11 1223333 356666
Q ss_pred EEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEE
Q 004094 381 IGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSC 460 (774)
Q Consensus 381 i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~ 460 (774)
+..+.. -.....|+.++++|+...++.. .. ..+++++..+.+.+..+.. ...+.+++
T Consensus 397 ~~~~~~--------~~~~~~~~~~~~s~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~--~~~~~~~~-- 453 (615)
T 1pgu_A 397 VNGITK--------HEFGSQPKVASANNDGFTAVLT-ND----------DDLLILQSFTGDIIKSVRL--NSPGSAVS-- 453 (615)
T ss_dssp ETTEEE--------EECSSCEEEEEECSSSEEEEEE-TT----------SEEEEEETTTCCEEEEEEC--SSCEEEEE--
T ss_pred EEEccc--------CcccCCceEEEEcCCCCEEEEe-CC----------CceEEEeccCCceeeeccc--CCCceEEE--
Confidence 554432 2222367888998887544443 32 2688898877888777663 34555554
Q ss_pred EEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeE-EEEE-CCEEEEEEeeec
Q 004094 461 SFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKL-LAAI-NQKIQLYKWMLR 537 (774)
Q Consensus 461 ~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~l-v~~~-g~~l~v~~~~~~ 537 (774)
+. ..++++|+. ..|.+++|++.++++.........++|++++-- ++.+ +++. ...|++|++.
T Consensus 454 -~~---~~~l~~~~~---------~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~-- 518 (615)
T 1pgu_A 454 -LS---QNYVAVGLE---------EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ-- 518 (615)
T ss_dssp -EC---SSEEEEEET---------TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT--
T ss_pred -Ec---CCEEEEeec---------CCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCC--
Confidence 33 467888762 148899999876555432222457889988854 4554 4443 3688998753
Q ss_pred CCCchhhhhh-cc-cccceEEEEEEE----------eCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEe
Q 004094 538 DDGTRELQSE-CG-HHGHILALYVQT----------RGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEIL 605 (774)
Q Consensus 538 ~~~~~~l~~~-~~-~~~~~~~~~l~~----------~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l 605 (774)
.+ ++... .. +...+..+.... .++++++|+.-..|.++.+......+..+ ..+...++++.|.
T Consensus 519 -~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~h~~~v~~l~~s 593 (615)
T 1pgu_A 519 -SR--EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL--NAHKDGVNNLLWE 593 (615)
T ss_dssp -TT--EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET--TSSTTCEEEEEEE
T ss_pred -CC--cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh--hcCccceEEEEEc
Confidence 12 22211 11 222333344444 67899999999998876543322233332 3345678889888
Q ss_pred eCCeEEEEccCCcEEEEeeCC
Q 004094 606 DDDIYLGAENNFNLFTVRKNS 626 (774)
Q Consensus 606 ~~~~~l~~D~~gnl~~l~~~~ 626 (774)
.++.++.+..+|.+.+++.+.
T Consensus 594 ~~~~l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 594 TPSTLVSSGADACIKRWNVVL 614 (615)
T ss_dssp ETTEEEEEETTSCEEEEEEC-
T ss_pred CCCCeEEecCCceEEEEeeec
Confidence 777766788899999998764
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.15 E-value=3.5e-05 Score=88.57 Aligned_cols=417 Identities=14% Similarity=0.156 Sum_probs=229.9
Q ss_pred CcEEEEecCCCceeeeEeCCCCCcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEE-ec-----cCCceeEEEEeC
Q 004094 153 GSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVK-HA-----QLEYEISCLDIN 224 (774)
Q Consensus 153 ~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~-~~-----~l~~~is~l~~~ 224 (774)
+.|++.+....+....+.. ....|.+++.+ +..++.+..++.+..+.+..++....- .. .....|.++++.
T Consensus 170 ~~v~lwd~~~~~~~~~l~~-H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s 248 (611)
T 1nr0_A 170 NTVAIFEGPPFKFKSTFGE-HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248 (611)
T ss_dssp SCEEEEETTTBEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred CeEEEEECCCCeEeeeecc-ccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC
Confidence 4567777655444333332 23458777766 346666666788888776655433221 11 356789999997
Q ss_pred CCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccc
Q 004094 225 PIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELT 304 (774)
Q Consensus 225 ~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~ 304 (774)
+ ...+++.|.. |+++++|++.+.+.+...............+. + +...++.+..||.+..|.... +...
T Consensus 249 p------dg~~l~s~s~-D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~s~s~d~~i~~~~~~~--~~~~ 317 (611)
T 1nr0_A 249 P------DGTKIASASA-DKTIKIWNVATLKVEKTIPVGTRIEDQQLGII-W-TKQALVSISANGFINFVNPEL--GSID 317 (611)
T ss_dssp T------TSSEEEEEET-TSEEEEEETTTTEEEEEEECCSSGGGCEEEEE-E-CSSCEEEEETTCCEEEEETTT--TEEE
T ss_pred C------CCCEEEEEeC-CCeEEEEeCCCCceeeeecCCCCccceeEEEE-E-cCCEEEEEeCCCcEEEEeCCC--CCcc
Confidence 5 2467777777 99999999987666544333211111111111 2 345688899999998876432 2211
Q ss_pred cceeeecC-CCCeEEEEEEeCCcceEEEec-CCCeEEEecC-CcEEEe--eecccCceeeecccCCCCCCcEEEE-eCCe
Q 004094 305 DRKKVSLG-TQPITLRTFSSKNTTHVFAAS-DRPTVIYSSN-KKLLYS--NVNLKEVSHMCPFNSAAFPDSLAIA-KEGE 378 (774)
Q Consensus 305 ~~~~~~lG-~~pv~l~~~~~~~~~~v~~~~-~~p~~l~~~~-~~~~~~--~~~~~~i~~~~~f~~~~~~~~l~~~-~~~~ 378 (774)
....| ..++.-..+.. +...++..+ +....++... +..... ......+.+++ |.. ...++.. .++.
T Consensus 318 ---~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~-~s~---~~~l~s~s~d~~ 389 (611)
T 1nr0_A 318 ---QVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK-TTS---KGDLFTVSWDDH 389 (611)
T ss_dssp ---EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEE-ECT---TSCEEEEETTTE
T ss_pred ---eEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEE-ECC---CCcEEEEEcCCc
Confidence 11112 22333223321 223333333 3333333322 221110 01112233322 221 1223333 3677
Q ss_pred EEEEEEcCCC--CeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEE
Q 004094 379 LTIGTIDDIQ--KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCS 456 (774)
Q Consensus 379 l~i~~l~~~~--~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~s 456 (774)
+++..+.... ........+...|..++++++.+.+++++.. .+++++.. + +..+. ....+.+
T Consensus 390 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~-----------~v~~~~~~--~-~~~~~--~~~~v~~ 453 (611)
T 1nr0_A 390 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK-----------HIAIYSHG--K-LTEVP--ISYNSSC 453 (611)
T ss_dssp EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESS-----------EEEEEETT--E-EEEEE--CSSCEEE
T ss_pred eEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCc-----------eEEEEeCC--c-eeeee--cCCCceE
Confidence 7777665432 1111223556677888888887766666432 47777743 3 33333 2334555
Q ss_pred EEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEEEE--CCEEEEEE
Q 004094 457 ILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQLYK 533 (774)
Q Consensus 457 i~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~~--g~~l~v~~ 533 (774)
+. +.. ..+++++|+ ..|.+++|++..++++.+....+.++|++++-- +|.++++. ..++++|+
T Consensus 454 va---~sp-dg~~lasgs----------~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~ 519 (611)
T 1nr0_A 454 VA---LSN-DKQFVAVGG----------QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 519 (611)
T ss_dssp EE---ECT-TSCEEEEEE----------TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EE---EeC-CCCEEEEeC----------CCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEE
Confidence 43 443 356888887 248999999998777666556778999999855 45554443 36788877
Q ss_pred eeecCCCchhhhhhcc---cccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCC-cceeEEEEEeeCCe
Q 004094 534 WMLRDDGTRELQSECG---HHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYN-ANWMSAVEILDDDI 609 (774)
Q Consensus 534 ~~~~~~~~~~l~~~~~---~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~-~~~v~~~~~l~~~~ 609 (774)
... .+ ++..... +...+..+..+..+.+|+.|..-+.|.++.++.....+..+ ...+ ...|+++.|..++.
T Consensus 520 ~~~--~~--~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~-~~~h~~~~v~~v~fs~d~~ 594 (611)
T 1nr0_A 520 VAN--NF--ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII-KGAHAMSSVNSVIWLNETT 594 (611)
T ss_dssp GGG--TT--EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE-TTSSTTSCEEEEEEEETTE
T ss_pred cCC--CC--ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchh-hccCcccCeeEEEEcCCCE
Confidence 531 12 2222111 22233344444457799999999998875543222222112 2234 56788999988878
Q ss_pred EEEEccCCcEEEEee
Q 004094 610 YLGAENNFNLFTVRK 624 (774)
Q Consensus 610 ~l~~D~~gnl~~l~~ 624 (774)
++.+..+|.+.+.+.
T Consensus 595 l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 595 IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEEEETTSCEEEEEC
T ss_pred EEEecCCCCEEEEec
Confidence 777888999988775
No 4
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.04 E-value=4.1e-05 Score=87.53 Aligned_cols=460 Identities=11% Similarity=0.050 Sum_probs=237.5
Q ss_pred cCcEEEEecCCC----ceeeeEeCCCCCc-EEEEEECC----CEEEEEEcCCeEEEEEEcCc------eEEEEEe-ccCC
Q 004094 152 SGSVRLVSSTSR----ELRNEWKSPPGYS-VNVATANA----SQVLLATGGGHLVYLEIGDG------ILTEVKH-AQLE 215 (774)
Q Consensus 152 ~~~i~l~~~~~~----~~~~~~~~~~~~~-I~~a~~~~----~~lvv~~~~~~~~~~~~~~~------~l~~~~~-~~l~ 215 (774)
.+.|++++.+++ +....... .... |.+.+.++ ..++.+..++.+..+.+..+ ....... ....
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~-h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 116 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTG-HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA 116 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECT-TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS
T ss_pred CCeEEEEECCCCCCccccceEEec-CCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccc
Confidence 456777777655 45555443 3346 88888655 47777777888888887533 2222222 2356
Q ss_pred ceeEEEEeCCCCCCCCCcceEEEEEecC----CEEEEEECCCCCeeEEecCCC-ccCceeEEeeeecCeeEEEEEeCCCc
Q 004094 216 YEISCLDINPIGENPSYSQIAAVGMWTD----ISVRIFSLPDLNLITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGH 290 (774)
Q Consensus 216 ~~is~l~~~~~~~~~~~~~~~~vg~~~~----~~i~i~~l~~~~~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~ 290 (774)
..|.++++.+ ...+++++.. + +.+.+|+.. +.+.. +.. .....++.+.+- ++..++.|..||.
T Consensus 117 ~~v~~~~~s~------~~~~l~~~~~-~~~~~~~v~~~d~~--~~~~~--~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~ 184 (615)
T 1pgu_A 117 GPISDISWDF------EGRRLCVVGE-GRDNFGVFISWDSG--NSLGE--VSGHSQRINACHLKQS-RPMRSMTVGDDGS 184 (615)
T ss_dssp SCEEEEEECT------TSSEEEEEEC-CSSCSEEEEETTTC--CEEEE--CCSCSSCEEEEEECSS-SSCEEEEEETTTE
T ss_pred ccEEEEEEeC------CCCEEEEecc-CCCCccEEEEEECC--Cccee--eecCCccEEEEEECCC-CCcEEEEEeCCCc
Confidence 7899999975 2466777766 4 577777632 22221 211 112334433321 2337889999999
Q ss_pred EEEEEEecCCCccccceeeecCCC---CeEEEEEEeCCcceEEEec-CCCeEEEecC-CcE-EEe-e---ecccCceeee
Q 004094 291 LLNFLLNMKTGELTDRKKVSLGTQ---PITLRTFSSKNTTHVFAAS-DRPTVIYSSN-KKL-LYS-N---VNLKEVSHMC 360 (774)
Q Consensus 291 l~~y~~~~~~~~l~~~~~~~lG~~---pv~l~~~~~~~~~~v~~~~-~~p~~l~~~~-~~~-~~~-~---~~~~~i~~~~ 360 (774)
+..|++.. +.. .+...-... ++.-..+..++.+.+++.+ +....++..+ ++. ... . -....+.+++
T Consensus 185 v~vwd~~~--~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~ 260 (615)
T 1pgu_A 185 VVFYQGPP--FKF--SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS 260 (615)
T ss_dssp EEEEETTT--BEE--EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEE
T ss_pred EEEEeCCC--cce--eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEE
Confidence 99987543 221 111111122 4433333322133444444 3344444422 332 211 1 1223344333
Q ss_pred cccCCCCCCcEEEEe-CCeEEEEEEcCCCCeEEEEEeCC-----CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEE
Q 004094 361 PFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLG-----EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRL 434 (774)
Q Consensus 361 ~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~-----~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l 434 (774)
|. ..+.++... ++.+++..+.+.. ..+.+... ..+..+.+. ..+.+++++.+. .+++
T Consensus 261 -~~---~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g----------~i~~ 323 (615)
T 1pgu_A 261 -WL---DSQKFATVGADATIRVWDVTTSK--CVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDG----------TLNF 323 (615)
T ss_dssp -ES---SSSEEEEEETTSEEEEEETTTTE--EEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTS----------CEEE
T ss_pred -Ec---CCCEEEEEcCCCcEEEEECCCCc--EEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCC----------CEEE
Confidence 32 223344444 6788888877543 34445444 344455554 555555555432 5677
Q ss_pred EECCCceEEEEEECCCCceEEEEE------------------------------EEEEcCCCceEEEEEeeeeCCCCCCC
Q 004094 435 LDDQTFEFISTYPLDTFEYGCSIL------------------------------SCSFSDDSNVYYCVGTAYVLPEENEP 484 (774)
Q Consensus 435 ~d~~~~~~i~~~~~~~~E~~~si~------------------------------~~~~~~~~~~~i~VGT~~~~~~e~~~ 484 (774)
+|..+.+.+..+.- ....+.++. .+.+. ...+++.|+
T Consensus 324 ~d~~~~~~~~~~~~-~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~--~~~~l~~~~---------- 390 (615)
T 1pgu_A 324 YELGHDEVLKTISG-HNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS--KAQEYSSIS---------- 390 (615)
T ss_dssp EETTEEEEEEEECC-CSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECC--STTCCEEEE----------
T ss_pred EECCCCcEEEEEeC-CCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEEC--CCcEEEEEe----------
Confidence 77665554443322 111222221 11111 122333333
Q ss_pred cceEEEEEEEeCC------------------------e--------EEEEEEEeecCceeEeccccCeEEEEE--CCEEE
Q 004094 485 TKGRILVFIVEDG------------------------K--------LQLIAEKETKGAVYSLNAFNGKLLAAI--NQKIQ 530 (774)
Q Consensus 485 ~~Grl~v~~i~~~------------------------k--------l~~~~~~~~~g~v~~i~~~~~~lv~~~--g~~l~ 530 (774)
..|.+.+|++... . -+.+......+++++++..+.+|+++. ++.|+
T Consensus 391 ~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~ 470 (615)
T 1pgu_A 391 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQ 470 (615)
T ss_dssp TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEE
Confidence 1234444433211 1 112233346788888886655566665 57899
Q ss_pred EEEeeecCCCchhhh--hhcccccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEee--
Q 004094 531 LYKWMLRDDGTRELQ--SECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD-- 606 (774)
Q Consensus 531 v~~~~~~~~~~~~l~--~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~-- 606 (774)
+|++.. .++. ....+...+..+..+..++++++|+.-..+.+ |+....+....-...+...++++.+-.
T Consensus 471 ~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i--w~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 543 (615)
T 1pgu_A 471 VFKLSD-----LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILL--YDLQSREVKTSRWAFRTSKINAISWKPAE 543 (615)
T ss_dssp EEETTE-----EEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEE--EETTTTEEEECCSCCCSSCEEEEEECCCC
T ss_pred EEECCC-----ccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEE--eeCCCCcceeEeecCCCCceeEEEEcCcc
Confidence 988632 1221 11111222333333346789999999888876 565555554333333567788888876
Q ss_pred --------CCe-EEEEccCCcEEEEeeCCCCCCccccceeeeEEEEEcCcccceEEeeeeeecCCCCCCCCccEEEEEcc
Q 004094 607 --------DDI-YLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTV 677 (774)
Q Consensus 607 --------~~~-~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~ 677 (774)
++. ++.++.+|.+.++...... ++......| .+.|+++.... ... ++.++.
T Consensus 544 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~h-~~~v~~l~~s~-----------~~~-l~s~~~ 603 (615)
T 1pgu_A 544 KGANEEEIEEDLVATGSLDTNIFIYSVKRPM-------KIIKALNAH-KDGVNNLLWET-----------PST-LVSSGA 603 (615)
T ss_dssp ------CCSCCEEEEEETTSCEEEEESSCTT-------CCEEETTSS-TTCEEEEEEEE-----------TTE-EEEEET
T ss_pred ccccccccCCCEEEEEcCCCcEEEEECCCCc-------eechhhhcC-ccceEEEEEcC-----------CCC-eEEecC
Confidence 544 5678889999999986421 111111112 34565554321 234 888899
Q ss_pred ccceEEEE
Q 004094 678 NGVIGVIA 685 (774)
Q Consensus 678 ~Gsi~~i~ 685 (774)
+|.|...-
T Consensus 604 d~~v~iw~ 611 (615)
T 1pgu_A 604 DACIKRWN 611 (615)
T ss_dssp TSCEEEEE
T ss_pred CceEEEEe
Confidence 99987653
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.93 E-value=2.4e-05 Score=98.00 Aligned_cols=402 Identities=13% Similarity=0.088 Sum_probs=222.2
Q ss_pred CcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceE-EEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEEC
Q 004094 175 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGIL-TEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL 251 (774)
Q Consensus 175 ~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l-~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l 251 (774)
..|.+.+.+ +..++.+..++.+..+.+..++. ..+ ......|+|+++++ ...+++.|.. ++.|.||++
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~--~~h~~~v~~~~~s~------~~~~l~s~~~-d~~v~vwd~ 686 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI--KAHEDEVLCCAFSS------DDSYIATCSA-DKKVKIWDS 686 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE--CCCSSCEEEEEECT------TSSEEEEEET-TSEEEEEET
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEe--ccCCCCEEEEEEec------CCCEEEEEeC-CCeEEEEEC
Confidence 467777765 44666666678888877766443 222 24567899999975 2467887777 999999999
Q ss_pred CCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEE
Q 004094 252 PDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFA 331 (774)
Q Consensus 252 ~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~ 331 (774)
.+.+.+....-. .....++.+..-++...+..|..||.+..|.+.. +... ....-...++.-..+.. +...++.
T Consensus 687 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~--~~~~--~~~~~h~~~v~~~~~sp-~~~~l~s 760 (1249)
T 3sfz_A 687 ATGKLVHTYDEH-SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ--KECR--NTMFGHTNSVNHCRFSP-DDELLAS 760 (1249)
T ss_dssp TTCCEEEEEECC-SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS--SSEE--EEECCCSSCEEEEEECS-STTEEEE
T ss_pred CCCceEEEEcCC-CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC--cchh--heecCCCCCEEEEEEec-CCCEEEE
Confidence 887665432211 1122344443333456788899999999987654 2211 11111223443333322 2233333
Q ss_pred ecC-CCeEEEecC-CcE-EEeeecc------------cCceeeecccCCCCCCcEEEEeCCeEEEEEEcCCCCeEEEEEe
Q 004094 332 ASD-RPTVIYSSN-KKL-LYSNVNL------------KEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIP 396 (774)
Q Consensus 332 ~~~-~p~~l~~~~-~~~-~~~~~~~------------~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~ 396 (774)
.+. ....++... ++. ....... ........|+. ..+.++...++.+.+..+............
T Consensus 761 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~ 838 (1249)
T 3sfz_A 761 CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA--DGDKIIVAAKNKVLLFDIHTSGLLAEIHTG 838 (1249)
T ss_dssp EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT--TSSEEEEEETTEEEEEETTTCCEEEEEECS
T ss_pred EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC--CCCEEEEEcCCcEEEEEecCCCceeEEcCC
Confidence 333 333333322 221 1111000 00001111211 122466667888888887765443333323
Q ss_pred CCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeee
Q 004094 397 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAY 476 (774)
Q Consensus 397 l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~ 476 (774)
-...+..++++|..+.+++++.+ +.++++|..+.+.+..+.- ....+.++. +..+ ..+++.|+.
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~d----------g~v~vwd~~~~~~~~~~~~-h~~~v~~v~---~spd-g~~l~s~s~- 902 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQ----------YCVELWNIDSRLKVADCRG-HLSWVHGVM---FSPD-GSSFLTASD- 902 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSS----------SCEEEEETTTTEEEEEECC-CSSCEEEEE---ECTT-SSEEEEEET-
T ss_pred CCCceEEEEEcCCCCEEEEEeCC----------CeEEEEEcCCCceeeecCC-CccceEEEE---ECCC-CCEEEEEeC-
Confidence 44678889999998887777654 3699999988877765543 233445543 4433 445666652
Q ss_pred eCCCCCCCcceEEEEEEEeC------------------------------CeEEEEE------EEeecCceeEeccc-c-
Q 004094 477 VLPEENEPTKGRILVFIVED------------------------------GKLQLIA------EKETKGAVYSLNAF-N- 518 (774)
Q Consensus 477 ~~~~e~~~~~Grl~v~~i~~------------------------------~kl~~~~------~~~~~g~v~~i~~~-~- 518 (774)
.|.+.+|++.+ ..+.... .....+++++++.- +
T Consensus 903 ---------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g 973 (1249)
T 3sfz_A 903 ---------DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL 973 (1249)
T ss_dssp ---------TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTS
T ss_pred ---------CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCC
Confidence 36677776431 0011111 01124566666644 3
Q ss_pred CeEEEEE-CCEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcc
Q 004094 519 GKLLAAI-NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNAN 597 (774)
Q Consensus 519 ~~lv~~~-g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~ 597 (774)
.+++++. ++.|++|++. .+ ..+.....+...+..+.....+++++.|..-..+.+ |+...++.... .....
T Consensus 974 ~~l~~g~~~g~i~i~d~~---~~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~v--wd~~~~~~~~~--~~~~~ 1045 (1249)
T 3sfz_A 974 EYVAFGDEDGAIKIIELP---NN-RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQV--WNWQTGDYVFL--QAHQE 1045 (1249)
T ss_dssp SEEEEEETTSCCEEEETT---TT-SCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEE--EETTTTEEECC--BCCSS
T ss_pred CEEEEEcCCCCEEEEEcC---CC-ceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEE--EECCCCceEEE--ecCCC
Confidence 3454444 3578887753 11 111111122222333344446778888888888766 45555544332 24456
Q ss_pred eeEEEEEeeCCeEEEEccCCcEEEEeeCC
Q 004094 598 WMSAVEILDDDIYLGAENNFNLFTVRKNS 626 (774)
Q Consensus 598 ~v~~~~~l~~~~~l~~D~~gnl~~l~~~~ 626 (774)
.+.++.+..++.++++..+|.+.++....
T Consensus 1046 ~v~~~~~~~~~~l~~~~~dg~v~vwd~~~ 1074 (1249)
T 3sfz_A 1046 TVKDFRLLQDSRLLSWSFDGTVKVWNVIT 1074 (1249)
T ss_dssp CEEEEEECSSSEEEEEESSSEEEEEETTT
T ss_pred cEEEEEEcCCCcEEEEECCCcEEEEECCC
Confidence 77788887777888888999999998754
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.91 E-value=1.6e-05 Score=99.61 Aligned_cols=427 Identities=15% Similarity=0.173 Sum_probs=225.3
Q ss_pred EEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCC
Q 004094 177 VNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDL 254 (774)
Q Consensus 177 I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~ 254 (774)
+.+++.+ +..++++. ++.+..+.+..+.............++++++.+ ....+++|.. ++.+.+|++.+.
T Consensus 801 v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp------~~~~l~~~~~-dg~v~vwd~~~~ 872 (1249)
T 3sfz_A 801 VKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP------YDHLAVIALS-QYCVELWNIDSR 872 (1249)
T ss_dssp BCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECS------STTEEEEECS-SSCEEEEETTTT
T ss_pred EEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcC------CCCEEEEEeC-CCeEEEEEcCCC
Confidence 4444443 44555554 677777776664443333334567889999875 2567777777 999999999876
Q ss_pred CeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecC
Q 004094 255 NLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASD 334 (774)
Q Consensus 255 ~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~ 334 (774)
..+....- ....+.++.+.+ +..+|+.+..||.+..|++......... .. ..+.... +. .....+...+.
T Consensus 873 ~~~~~~~~-h~~~v~~v~~sp--dg~~l~s~s~dg~v~vw~~~~~~~~~~~----~~-~~~~~~~-~~-~~~~~~~~~~~ 942 (1249)
T 3sfz_A 873 LKVADCRG-HLSWVHGVMFSP--DGSSFLTASDDQTIRVWETKKVCKNSAI----VL-KQEIDVV-FQ-ENETMVLAVDN 942 (1249)
T ss_dssp EEEEEECC-CSSCEEEEEECT--TSSEEEEEETTSCEEEEEHHHHHSCCSS----SE-EEEEEEE-EE-TTEEEEEEEES
T ss_pred ceeeecCC-CccceEEEEECC--CCCEEEEEeCCCeEEEEEccccceeeee----cc-cceeeEE-Ec-CCCcEEEEecC
Confidence 55432111 112334444432 4567899999999999986531100000 00 0000110 11 11122222222
Q ss_pred -CCeEEEe-cCCcEEEeeecccCceeeecccCCCCCCcEEEE-eCCeEEEEEEcCCCCeEEEEEe-CCCcccEEEEecCC
Q 004094 335 -RPTVIYS-SNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIA-KEGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQS 410 (774)
Q Consensus 335 -~p~~l~~-~~~~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~-~~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~ 410 (774)
+...+.. ..+.+.+.+ ...+.+++ |+. ..+.++.. .++.+.+..+...... ..+. -...++.++++|+.
T Consensus 943 ~~~~~~~~~~~~~~~~~~--~~~i~~~~-~sp--~g~~l~~g~~~g~i~i~d~~~~~~~--~~~~~h~~~v~~l~~s~dg 1015 (1249)
T 3sfz_A 943 IRGLQLIAGKTGQIDYLP--EAQVSCCC-LSP--HLEYVAFGDEDGAIKIIELPNNRVF--SSGVGHKKAVRHIQFTADG 1015 (1249)
T ss_dssp SSSEEEEEESSCCEEEEC--CSCEEEEE-ECT--TSSEEEEEETTSCCEEEETTTTSCE--EECCCCSSCCCCEEECSSS
T ss_pred CcceEEEecCcceEEEcc--cCcEEEEE-EcC--CCCEEEEEcCCCCEEEEEcCCCcee--eecccCCCceEEEEECCCC
Confidence 2222222 123332221 12233322 221 12233433 3678888888765432 2222 23457789999998
Q ss_pred CEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEE
Q 004094 411 RTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRIL 490 (774)
Q Consensus 411 ~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~ 490 (774)
+.++.++.+ +.+++.|..+.+.+. .....+.+.++. +.. ...++.|+ ..|.++
T Consensus 1016 ~~l~s~~~d----------g~i~vwd~~~~~~~~--~~~~~~~v~~~~---~~~--~~~l~~~~----------~dg~v~ 1068 (1249)
T 3sfz_A 1016 KTLISSSED----------SVIQVWNWQTGDYVF--LQAHQETVKDFR---LLQ--DSRLLSWS----------FDGTVK 1068 (1249)
T ss_dssp SCEEEECSS----------SBEEEEETTTTEEEC--CBCCSSCEEEEE---ECS--SSEEEEEE----------SSSEEE
T ss_pred CEEEEEcCC----------CEEEEEECCCCceEE--EecCCCcEEEEE---EcC--CCcEEEEE----------CCCcEE
Confidence 877766543 379999988876652 223444555544 332 33455554 248999
Q ss_pred EEEEeCCeEEEEEEEeecCceeEeccc-cCe-EEEE-ECCEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEE
Q 004094 491 VFIVEDGKLQLIAEKETKGAVYSLNAF-NGK-LLAA-INQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIV 567 (774)
Q Consensus 491 v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~-lv~~-~g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~ 567 (774)
+|++..+++.... ....++|++++-- ++. |+++ ..++|++|++. .+ ..+.....+...+..+..+..+.+++
T Consensus 1069 vwd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~---~~-~~~~~l~~h~~~v~~~~~s~dg~~la 1143 (1249)
T 3sfz_A 1069 VWNVITGRIERDF-TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD---LL-SPLHELKGHNGCVRCSAFSLDGILLA 1143 (1249)
T ss_dssp EEETTTTCCCEEE-ECCSSCCCCEEECSSSSSCEEECCSSCCCEECSS---SS-SCSBCCCCCSSCEEEEEECSSSSEEE
T ss_pred EEECCCCceeEEE-cccCCcEEEEEECCCCCEEEEEcCCCcEEEEECC---Cc-ceeeeeccCCCcEEEEEECCCCCEEE
Confidence 9998866543222 2357788888755 344 4433 34678887753 12 11111112222233344444677999
Q ss_pred EEeccccEEEEEEEccCCeEEE-E-------eccCCcceeEEEEEeeCCeEE-EEccCCcEEEEeeCCCCCCccccceee
Q 004094 568 VGDLMKSISLLIYKHEEGAIEE-R-------ARDYNANWMSAVEILDDDIYL-GAENNFNLFTVRKNSEGATDEERGRLE 638 (774)
Q Consensus 568 vgD~~~Sv~~~~~~~~~~~l~~-~-------a~D~~~~~v~~~~~l~~~~~l-~~D~~gnl~~l~~~~~~~~~~~~~~L~ 638 (774)
+|+.-..|.++.. ..++... + ....+..+++++.|-.++.++ +++ |.+.+++..... .+
T Consensus 1144 t~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~-------~~- 1211 (1249)
T 3sfz_A 1144 TGDDNGEIRIWNV--SDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGD-------SS- 1211 (1249)
T ss_dssp EEETTSCCCEEES--SSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCB-------CC-
T ss_pred EEeCCCEEEEEEC--CCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCc-------ee-
Confidence 9998888877543 3322111 1 012344567788887666544 454 889888875421 11
Q ss_pred eEEEEE-cCcccceEEeeeeeecCCCCCCCCccEEEEEccccceEEEE
Q 004094 639 VVGEYH-LGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIA 685 (774)
Q Consensus 639 ~~~~f~-lg~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gsi~~i~ 685 (774)
..+. .+..|+++.. ......++.++.+|.+..+.
T Consensus 1212 --~~~~~~~~~i~~~~~-----------s~dg~~l~~~~~dg~v~vw~ 1246 (1249)
T 3sfz_A 1212 --QTFYTNGTNLKKIHV-----------SPDFRTYVTVDNLGILYILQ 1246 (1249)
T ss_dssp --CCCCCSSCCCCCCEE-----------CSSSCCEEEECTTCCEEEEC
T ss_pred --eeeeccCCcccEEEE-----------CCCCCEEEEecCCcEEEEEe
Confidence 1111 1334444332 12345788899999998764
No 7
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.86 E-value=4.7e-05 Score=83.93 Aligned_cols=329 Identities=12% Similarity=0.107 Sum_probs=185.9
Q ss_pred EEEEEECCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCe
Q 004094 177 VNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNL 256 (774)
Q Consensus 177 I~~a~~~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~ 256 (774)
|.+.+.++..++.+..++.+..+.+..++....- ......|.|+++.+ ...++.|.. ||.+.+|++.+.+.
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~~~-------~~~l~s~s~-dg~i~vwd~~~~~~ 195 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAH-------GGILVSGST-DRTVRVWDIKKGCC 195 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECS-------TTEEEEEET-TSCEEEEETTTTEE
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEE-eCCCcCEEEEEEcC-------CCEEEEEeC-CCCEEEEECCCCcE
Confidence 4555567778888777888888887665543321 24567899999853 236777777 99999999987665
Q ss_pred eEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEe-cCC
Q 004094 257 ITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAA-SDR 335 (774)
Q Consensus 257 ~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~-~~~ 335 (774)
+....-. .....++.+....+..+|+.|..||.+..|.+...... ... ..-...+ .++.. ...
T Consensus 196 ~~~~~~h-~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~-~~~--~~~~~~~------------~~~~~~~~~ 259 (464)
T 3v7d_B 196 THVFEGH-NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV-PDH--GEEHDYP------------LVFHTPEEN 259 (464)
T ss_dssp EEEECCC-SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC---------CCSS------------EEESCGGGC
T ss_pred EEEECCC-CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccc-ccc--cccCCcc------------eEeeccCCC
Confidence 4432211 12334454444345678999999999999987642210 000 0000011 11100 111
Q ss_pred CeEEEecCCcEEEeeecccCceeeecccCCCCCCcEEEE-eCCeEEEEEEcCCCCeEEEEEe-CCCcccEEEEecCCCEE
Q 004094 336 PTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIA-KEGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTF 413 (774)
Q Consensus 336 p~~l~~~~~~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~-~~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~ 413 (774)
++++....+ ....+.++.+ .++.++.. .++.+++..+.+.. ..+.+. -...+..++++++.+.+
T Consensus 260 ~~~~~~~~~-------~~~~v~~~~~-----~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 260 PYFVGVLRG-------HMASVRTVSG-----HGNIVVSGSYDNTLIVWDVAQMK--CLYILSGHTDRIYSTIYDHERKRC 325 (464)
T ss_dssp TTEEEEECC-------CSSCEEEEEE-----ETTEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEETTTTEE
T ss_pred eEEEEEccC-------ccceEEEEcC-----CCCEEEEEeCCCeEEEEECCCCc--EEEEecCCCCCEEEEEEcCCCCEE
Confidence 222111111 0111222211 11233333 36777777776432 233333 23456788999988887
Q ss_pred EEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEE
Q 004094 414 AICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFI 493 (774)
Q Consensus 414 ~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~ 493 (774)
+.++.+. .|+++|..+.+.+..+.- ....+.++. +. ..+++.|+ ..|.+.+|+
T Consensus 326 ~sg~~dg----------~i~vwd~~~~~~~~~~~~-h~~~v~~~~---~~---~~~l~s~s----------~dg~v~vwd 378 (464)
T 3v7d_B 326 ISASMDT----------TIRIWDLENGELMYTLQG-HTALVGLLR---LS---DKFLVSAA----------ADGSIRGWD 378 (464)
T ss_dssp EEEETTS----------CEEEEETTTTEEEEEECC-CSSCEEEEE---EC---SSEEEEEE----------TTSEEEEEE
T ss_pred EEEeCCC----------cEEEEECCCCcEEEEEeC-CCCcEEEEE---Ec---CCEEEEEe----------CCCcEEEEE
Confidence 7776543 799999998888776653 234455544 33 36777776 348999999
Q ss_pred EeCCeEEEEEEEeecCcee--EeccccCeEEEEECCEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEec
Q 004094 494 VEDGKLQLIAEKETKGAVY--SLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDL 571 (774)
Q Consensus 494 i~~~kl~~~~~~~~~g~v~--~i~~~~~~lv~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~ 571 (774)
+...+..... ....++. ++..-+..|+++..+.|++|++. .+ +++..........+.++...++.++++-.
T Consensus 379 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~---~g--~~~~~~~~~~~~~v~~v~~~~~~l~~~~~ 451 (464)
T 3v7d_B 379 ANDYSRKFSY--HHTNLSAITTFYVSDNILVSGSENQFNIYNLR---SG--KLVHANILKDADQIWSVNFKGKTLVAAVE 451 (464)
T ss_dssp TTTCCEEEEE--ECTTCCCEEEEEECSSEEEEEETTEEEEEETT---TC--CEEESCTTTTCSEEEEEEEETTEEEEEEE
T ss_pred CCCCceeeee--cCCCCccEEEEEeCCCEEEEecCCeEEEEECC---CC--cEEehhhccCCCcEEEEEecCCEEEEEEE
Confidence 8765533333 2333333 33333455777778899998853 22 23221111122345666667888887776
Q ss_pred cccEEEE
Q 004094 572 MKSISLL 578 (774)
Q Consensus 572 ~~Sv~~~ 578 (774)
.++..++
T Consensus 452 ~~g~~~i 458 (464)
T 3v7d_B 452 KDGQSFL 458 (464)
T ss_dssp ETTEEEE
T ss_pred eCCeEEE
Confidence 6765544
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=98.79 E-value=0.00062 Score=77.13 Aligned_cols=385 Identities=15% Similarity=0.170 Sum_probs=204.9
Q ss_pred CcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECC
Q 004094 175 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 252 (774)
Q Consensus 175 ~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~ 252 (774)
..|...+.. +..++.+..++.+..+......+..+ ......|.++++.+ ....++.+.. ++.+.+|+..
T Consensus 181 ~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~--~~~~~~v~~~~~s~------dg~~l~~~~~-d~~i~~w~~~ 251 (577)
T 2ymu_A 181 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVRGVAFSP------DGQTIASASD-DKTVKLWNRN 251 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE--ECCSSCEEEEEECT------TSSCEEEEET-TSCEEEECTT
T ss_pred cceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEE--ecCCCCEEEEEECC------CCCEEEEEeC-CCEEEEEeCC
Confidence 456666654 44666666667776655322222222 23456789999865 1456777776 9999999965
Q ss_pred CCCeeEEecCCC-ccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEE
Q 004094 253 DLNLITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFA 331 (774)
Q Consensus 253 ~~~~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~ 331 (774)
. +.+.. +.. ...+.++.+. .+...|+.+..||.+..|+.+ +.+. +...--..++.-..+.. +...++.
T Consensus 252 ~-~~~~~--~~~~~~~v~~v~~~--~d~~~l~~~~~d~~i~~w~~~---~~~~--~~~~~h~~~v~~~~~~~-~~~~l~t 320 (577)
T 2ymu_A 252 G-QLLQT--LTGHSSSVNGVAFR--PDGQTIASASDDKTVKLWNRN---GQLL--QTLTGHSSSVWGVAFSP-DGQTIAS 320 (577)
T ss_dssp S-CEEEE--ECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETT---SCEE--EEECCCSSCEEEEEECT-TSSEEEE
T ss_pred C-CEEEE--EecCCCCEEEEEEc--CCCCEEEEEeCCCEEEEEeCC---CcEE--EEEecCCCCeEEEEECC-CCCEEEE
Confidence 3 22221 111 1123344333 245678899999999888632 2211 11111122332222221 2233433
Q ss_pred ecCCC-eEEEecCC-cEEEeeecccCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCCCCeEEEEEe-CCCcccEEEEe
Q 004094 332 ASDRP-TVIYSSNK-KLLYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQ 407 (774)
Q Consensus 332 ~~~~p-~~l~~~~~-~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~ 407 (774)
.+... ..++...+ .+....-....+.+++ |.. ....++... ++.+++..... +. .+.+. -...++.++|+
T Consensus 321 ~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~-~s~--~g~~l~~~~~dg~v~~~~~~~--~~-~~~~~~~~~~v~~~~~s 394 (577)
T 2ymu_A 321 ASDDKTVKLWNRNGQHLQTLTGHSSSVWGVA-FSP--DGQTIASASDDKTVKLWNRNG--QL-LQTLTGHSSSVRGVAFS 394 (577)
T ss_dssp EETTSCEEEEETTSCEEEEECCCSSCEEEEE-ECT--TSSEEEEEETTSEEEEEETTC--CE-EEEEECCSSCEEEEEEC
T ss_pred EeCCCeEEEEeCCCCeeEEEeCCCCCEEEEE-ECC--CCCEEEEEeCCCEEEEEcCCC--CE-EEEecCCCCCeEEEEEC
Confidence 33333 33333222 2222221223333332 221 112344333 56777776432 22 23332 24567889999
Q ss_pred cCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcce
Q 004094 408 EQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKG 487 (774)
Q Consensus 408 ~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~G 487 (774)
|+.+.++.++.+. .|+++|. +.+.+..+.-. ...+.++. +.. ...+++.|. ..|
T Consensus 395 ~dg~~l~~~~~d~----------~v~~~~~-~~~~~~~~~~~-~~~v~~~~---~s~-d~~~l~~~~----------~d~ 448 (577)
T 2ymu_A 395 PDGQTIASASDDK----------TVKLWNR-NGQLLQTLTGH-SSSVWGVA---FSP-DDQTIASAS----------DDK 448 (577)
T ss_dssp TTSSCEEEEETTS----------EEEEECT-TCCEEEEEECC-SSCEEEEE---ECT-TSSEEEEEE----------TTS
T ss_pred CCCCEEEEEeCCC----------EEEEEeC-CCCEEEEecCC-CCCeEEEE---ECC-CCCEEEEEc----------CCC
Confidence 9988877776443 7888885 45666555432 33455543 443 345677665 237
Q ss_pred EEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEEEE--CCEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCC
Q 004094 488 RILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGD 564 (774)
Q Consensus 488 rl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~~--g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 564 (774)
.+.+|+.....++.+ ....++|++++-- +++++++. ...|++|+. ++ +.+.....+...+..+..+..+.
T Consensus 449 ~v~~w~~~~~~~~~~--~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~----~~-~~~~~~~~h~~~v~~l~~s~dg~ 521 (577)
T 2ymu_A 449 TVKLWNRNGQLLQTL--TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NG-QLLQTLTGHSSSVRGVAFSPDGQ 521 (577)
T ss_dssp EEEEEETTSCEEEEE--ECCSSCEEEEEECTTSCEEEEEETTSEEEEEET----TS-CEEEEEECCSSCEEEEEECTTSS
T ss_pred EEEEEECCCCEEEEE--cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC----CC-CEEEEEeCCCCCEEEEEEcCCCC
Confidence 899998644333332 3457889988754 45554433 367888763 22 11221222222233333334567
Q ss_pred EEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCe-EEEEccCCcEEEE
Q 004094 565 FIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI-YLGAENNFNLFTV 622 (774)
Q Consensus 565 ~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~-~l~~D~~gnl~~l 622 (774)
+++.|+.-..|.+ |+.+...+..+. .+...|+++.|..++. ++.+..||.+.+.
T Consensus 522 ~l~s~~~dg~v~l--wd~~~~~~~~~~--~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 522 TIASASDDKTVKL--WNRNGQLLQTLT--GHSSSVWGVAFSPDGQTIASASSDKTVKLW 576 (577)
T ss_dssp CEEEEETTSEEEE--ECTTSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEEEEECcCEEEE--EeCCCCEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence 8888988888776 454444443332 3456788888876654 5567778888764
No 9
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=98.70 E-value=0.0011 Score=75.02 Aligned_cols=542 Identities=14% Similarity=0.135 Sum_probs=270.5
Q ss_pred cCcccceEEecCCCCCCCeEEEEEecCCCCcEEEEecCCceeEEEeeeCCCcceeeeeecCCCCCCceEEEEEecCceE-
Q 004094 34 LGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETR- 112 (774)
Q Consensus 34 ~~Pi~D~~v~~~~~~~~~~l~~~sG~g~~g~L~~lr~gi~~~~~~~~~l~~~~~iw~~~~~~~~~~~~~li~S~~~~T~- 112 (774)
-++|..+++-+. .++++.+ +.+|.+++... .-+.+..+.- .-..++.+..+. ...+|+....+.+.
T Consensus 16 ~~~V~~~a~spd-----g~~las~--~~d~~v~iWd~--~~~~~~~l~g-h~~~V~~l~fsp---dg~~las~~~d~~i~ 82 (577)
T 2ymu_A 16 SSSVRGVAFSPD-----GQTIASA--SDDKTVKLWNR--NGQLLQTLTG-HSSSVWGVAFSP---DGQTIASASDDKTVK 82 (577)
T ss_dssp SSCEEEEEECTT-----SSCEEEE--ETTSEEEEECT--TSCEEEEEEC-CSSCEEEEEECT---TSSEEEEEETTSCEE
T ss_pred CCcEEEEEECCC-----CCEEEEE--eCCCEEEEEEC--CCCEEEEEeC-CCCCEEEEEECC---CCCEEEEEeCCCEEE
Confidence 457877777542 3444433 35678888763 3344444321 123577776643 24566666666553
Q ss_pred EEEecCCCCeeeee-------ecCccccCcceeeeecCCCeEEEEecCcEEEEecCCCceeeeEeCCCCCcEEEEEEC--
Q 004094 113 ILAMNLEDELEETE-------IEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATAN-- 183 (774)
Q Consensus 113 vl~~~~~~~~~e~~-------~~~f~~~~~Tl~~~~~~~~~~vQVT~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~-- 183 (774)
|+.... +.+.... .-.|..+.+.|+++.- ...+++.+... ....... .....+......
T Consensus 83 vWd~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~---------d~~~~~~~~~~-~~~~~~~-~~~~~v~~~~~~~~ 150 (577)
T 2ymu_A 83 LWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASD---------DKTVKLWNRNG-QLLQTLT-GHSSSVWGVAFSPD 150 (577)
T ss_dssp EEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEET---------TSCEEEEETTC-CEEEEEC-CCSSCEEEEEECTT
T ss_pred EEECCC-CEEEEEECCCCCEEEEEECCCCCEEEEEcC---------CCceeeccccc-ceeeecc-CCCCceeeeeeecC
Confidence 444322 1121111 1122223333333321 12233443332 1111111 122345555543
Q ss_pred CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCC
Q 004094 184 ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLG 263 (774)
Q Consensus 184 ~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~ 263 (774)
...+......+....... ...... ........+.++++.+ ...+++.|.. ++.+.+|+... +.+....-
T Consensus 151 ~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~v~~~~~~~------~~~~l~~~~~-d~~v~~w~~~~-~~~~~~~~- 219 (577)
T 2ymu_A 151 GQTIASASDDKTVKLWNR-NGQLLQ-TLTGHSSSVWGVAFSP------DGQTIASASD-DKTVKLWNRNG-QLLQTLTG- 219 (577)
T ss_dssp SSCEEEEETTSEEEEECT-TSCEEE-EEECCSSCEEEEEECT------TSSCEEEEET-TSEEEEECTTS-CEEEEEEC-
T ss_pred Cccceecccccceecccc-ceeeee-eccCCCcceeeeeecC------CCCEEEEEcC-CCEEEEEeCCC-cEEEEEec-
Confidence 224444433444433221 122111 1234456788888864 2456777777 99999999653 32221111
Q ss_pred CccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEec-CCCeEEEec
Q 004094 264 GEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYSS 342 (774)
Q Consensus 264 ~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~l~~~ 342 (774)
......++++.+ +..+|+.|..||.+..|+.+ +... +...-...++.-..+.. +...++..+ +....++..
T Consensus 220 ~~~~v~~~~~s~--dg~~l~~~~~d~~i~~w~~~---~~~~--~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~ 291 (577)
T 2ymu_A 220 HSSSVRGVAFSP--DGQTIASASDDKTVKLWNRN---GQLL--QTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNR 291 (577)
T ss_dssp CSSCEEEEEECT--TSSCEEEEETTSCEEEECTT---SCEE--EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEET
T ss_pred CCCCEEEEEECC--CCCEEEEEeCCCEEEEEeCC---CCEE--EEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeC
Confidence 112234444432 34578889999999887532 2211 11111123333223321 223333333 333444443
Q ss_pred CCcE-EEeeecccCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCCCCeEEEEEeC-CCcccEEEEecCCCEEEEEEec
Q 004094 343 NKKL-LYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLK 419 (774)
Q Consensus 343 ~~~~-~~~~~~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~ 419 (774)
.++. ...+-....+.+++ |+. ....++... ++.+++..++.. ..+.+.- ...+..++++|+.+.++.++.+
T Consensus 292 ~~~~~~~~~~h~~~v~~~~-~~~--~~~~l~t~~~d~~i~~w~~~~~---~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 365 (577)
T 2ymu_A 292 NGQLLQTLTGHSSSVWGVA-FSP--DGQTIASASDDKTVKLWNRNGQ---HLQTLTGHSSSVWGVAFSPDGQTIASASDD 365 (577)
T ss_dssp TSCEEEEECCCSSCEEEEE-ECT--TSSEEEEEETTSCEEEEETTSC---EEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCcEEEEEecCCCCeEEEE-ECC--CCCEEEEEeCCCeEEEEeCCCC---eeEEEeCCCCCEEEEEECCCCCEEEEEeCC
Confidence 3332 22121223444433 221 112344333 577888775532 3344433 3456789999998887776644
Q ss_pred cCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeE
Q 004094 420 NQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKL 499 (774)
Q Consensus 420 ~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl 499 (774)
..++++|. +.+.+..+.- ....+.+++ +..+ .++++.|. ..|.|++|+.....+
T Consensus 366 ----------g~v~~~~~-~~~~~~~~~~-~~~~v~~~~---~s~d-g~~l~~~~----------~d~~v~~~~~~~~~~ 419 (577)
T 2ymu_A 366 ----------KTVKLWNR-NGQLLQTLTG-HSSSVRGVA---FSPD-GQTIASAS----------DDKTVKLWNRNGQLL 419 (577)
T ss_dssp ----------SEEEEEET-TCCEEEEEEC-CSSCEEEEE---ECTT-SSCEEEEE----------TTSEEEEECTTCCEE
T ss_pred ----------CEEEEEcC-CCCEEEEecC-CCCCeEEEE---ECCC-CCEEEEEe----------CCCEEEEEeCCCCEE
Confidence 36888885 4566655543 234455554 4433 45677665 237889997533333
Q ss_pred EEEEEEeecCceeEeccc-cCe-EEEEE-CCEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEeccccEE
Q 004094 500 QLIAEKETKGAVYSLNAF-NGK-LLAAI-NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSIS 576 (774)
Q Consensus 500 ~~~~~~~~~g~v~~i~~~-~~~-lv~~~-g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~ 576 (774)
+.+ ....++|++++-- ++. |+.+. +..|++|+.+ + +.+.....+...+..+..+..+.+++.|..-..|.
T Consensus 420 ~~~--~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~----~-~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~ 492 (577)
T 2ymu_A 420 QTL--TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN----G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 492 (577)
T ss_dssp EEE--ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----S-CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred EEe--cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC----C-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 322 3467889988754 344 44443 3678887632 2 12222222222333333444567888888877776
Q ss_pred EEEEEccCCeEEEEeccCCcceeEEEEEeeCCe-EEEEccCCcEEEEeeCCCCCCccccceeeeEEEEEcCcccceEEee
Q 004094 577 LLIYKHEEGAIEERARDYNANWMSAVEILDDDI-YLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHG 655 (774)
Q Consensus 577 ~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~-~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~ 655 (774)
+ |+.+...+..+. .+...++++.|-.++. ++.++.+|.+.+++++. ..+. ...-| .+.|+++...
T Consensus 493 i--w~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~--------~~~~-~~~~h-~~~v~~~~fs 558 (577)
T 2ymu_A 493 L--WNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--------QLLQ-TLTGH-SSSVWGVAFS 558 (577)
T ss_dssp E--EETTSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS--------CEEE-EEECC-SSCEEEEEEC
T ss_pred E--EcCCCCEEEEEe--CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC--------CEEE-EEcCC-CCCEEEEEEc
Confidence 6 555544444432 2345678887766554 56788899999997532 2222 11112 3456555421
Q ss_pred eeeecCCCCCCCCccEEEEEccccceEE
Q 004094 656 SLVMRLPDSDVGQIPTVIFGTVNGVIGV 683 (774)
Q Consensus 656 ~~~~~~~~~~~~~~~~il~~t~~Gsi~~ 683 (774)
.+...++.++.||.|..
T Consensus 559 -----------~dg~~l~s~~~D~~i~~ 575 (577)
T 2ymu_A 559 -----------PDGQTIASASSDKTVKL 575 (577)
T ss_dssp -----------TTSSCEEEEETTSCEEE
T ss_pred -----------CCCCEEEEEeCCCEEEE
Confidence 12356777888998754
No 10
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=98.59 E-value=3.5e-05 Score=84.25 Aligned_cols=258 Identities=14% Similarity=0.155 Sum_probs=146.1
Q ss_pred CCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCC---C---CeeEEecCCCccCceeEEeeeecCeeEEEEEeC
Q 004094 214 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD---L---NLITKEHLGGEIIPRSVLLCAFEGISYLLCALG 287 (774)
Q Consensus 214 l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~---~---~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~ 287 (774)
....|+|+++.+. ...+++.|.. ||.|+||++.+ . .......- .....++.+.+ +..+|+.|..
T Consensus 62 h~~~V~~~~~s~~-----~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~--~~~~l~s~s~ 131 (437)
T 3gre_A 62 EPNSITSSAVSPG-----ETPYLITGSD-QGVIKIWNLKEIIVGEVYSSSLTYDC--SSTVTQITMIP--NFDAFAVSSK 131 (437)
T ss_dssp TTSCEEEEEEECS-----SSCEEEEEET-TSEEEEEEHHHHHTTCCCSCSEEEEC--SSCEEEEEECT--TSSEEEEEET
T ss_pred CCCceEEEEECCC-----CCCEEEEecC-CceEEEeECcccccCcccceeeeccC--CCCEEEEEEeC--CCCEEEEEeC
Confidence 4578999999641 1467787777 99999999864 1 11111111 12334444442 4567999999
Q ss_pred CCcEEEEEEecC-CCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCeEEEecCCcEEEeeecccCceeeecccCCC
Q 004094 288 DGHLLNFLLNMK-TGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAA 366 (774)
Q Consensus 288 ~G~l~~y~~~~~-~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~~~~~~~~~~~~~~i~~~~~f~~~~ 366 (774)
||.+..|+++.. ++.... .....++ ..+..... + ....+.++..+.++
T Consensus 132 dg~i~vwd~~~~~~~~~~~----~~~~~~i--~~~~~~~~-~-----------------------~~~~~~~~~~~~~~- 180 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVK----FLNCECI--RKINLKNF-G-----------------------KNEYAVRMRAFVNE- 180 (437)
T ss_dssp TSEEEEEEEEEEEETTEEE----EEEEEEE--EEEEGGGG-S-----------------------SCCCEEEEEEEECS-
T ss_pred CCEEEEEEeccccCCceee----cccccee--EEEEccCc-c-----------------------cccCceEEEEEEcC-
Confidence 999999998632 121100 0000011 11110000 0 00011111111110
Q ss_pred CCCcEEEE-eCCeEEEEEEcCCCCeEEEEEeC---CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceE
Q 004094 367 FPDSLAIA-KEGELTIGTIDDIQKLHIRSIPL---GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEF 442 (774)
Q Consensus 367 ~~~~l~~~-~~~~l~i~~l~~~~~~~~~~i~l---~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~ 442 (774)
....++.. .++.+++..+..... .+.+.. ...+..++++|..+.++.++.+ ..|+++|..+.+.
T Consensus 181 ~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----------g~i~iwd~~~~~~ 248 (437)
T 3gre_A 181 EKSLLVALTNLSRVIIFDIRTLER--LQIIENSPRHGAVSSICIDEECCVLILGTTR----------GIIDIWDIRFNVL 248 (437)
T ss_dssp SCEEEEEEETTSEEEEEETTTCCE--EEEEECCGGGCCEEEEEECTTSCEEEEEETT----------SCEEEEETTTTEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCee--eEEEccCCCCCceEEEEECCCCCEEEEEcCC----------CeEEEEEcCCccE
Confidence 01122322 256777777655332 333433 3567889999998877777654 3799999999998
Q ss_pred EEEEECCCCceEEEEEEE-EEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE----------------
Q 004094 443 ISTYPLDTFEYGCSILSC-SFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK---------------- 505 (774)
Q Consensus 443 i~~~~~~~~E~~~si~~~-~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~---------------- 505 (774)
+.++.+.....+.+++.. .+. ....+++.|+ ..|.|.+|++..++.......
T Consensus 249 ~~~~~~~~~~~v~~~~~~~~~s-~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (437)
T 3gre_A 249 IRSWSFGDHAPITHVEVCQFYG-KNSVIVVGGS----------SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKG 317 (437)
T ss_dssp EEEEBCTTCEEEEEEEECTTTC-TTEEEEEEES----------TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSS
T ss_pred EEEEecCCCCceEEEEeccccC-CCccEEEEEc----------CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccc
Confidence 888888777677776532 111 2356777775 348999999986664433321
Q ss_pred ---------eecCceeEeccccCeEEEEEC--CEEEEEEee
Q 004094 506 ---------ETKGAVYSLNAFNGKLLAAIN--QKIQLYKWM 535 (774)
Q Consensus 506 ---------~~~g~v~~i~~~~~~lv~~~g--~~l~v~~~~ 535 (774)
...++|++++.-++.++++.+ +.|++|++.
T Consensus 318 l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 318 LEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp GGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETT
T ss_pred cccceecccccCCceEEEEECCceEEEecCCCCeEEEEECC
Confidence 145567777766666555554 788887753
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=98.54 E-value=0.00018 Score=85.45 Aligned_cols=269 Identities=12% Similarity=0.068 Sum_probs=149.2
Q ss_pred CcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECC
Q 004094 175 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 252 (774)
Q Consensus 175 ~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~ 252 (774)
..|.+.+.+ +..++++..++.+..+.+..++....- ......|+|+++.+ ...++++|.. +|.|.+|++.
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~------~~~~l~~~~~-dg~i~vw~~~ 85 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-QVTETPVRAGKFIA------RKNWIIVGSD-DFRIRVFNYN 85 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEG------GGTEEEEEET-TSEEEEEETT
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-ecCCCcEEEEEEeC------CCCEEEEEeC-CCeEEEEECC
Confidence 357777765 446777777788877777665433321 23567899999975 2567888877 9999999998
Q ss_pred CCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEe
Q 004094 253 DLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAA 332 (774)
Q Consensus 253 ~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~ 332 (774)
+.+.+....-. .....++.+.+ +..+|++|..||.+..|.++... .. .+...-...++.-..+...+...+++.
T Consensus 86 ~~~~~~~~~~~-~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~-~~--~~~~~~~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 86 TGEKVVDFEAH-PDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNW-AL--EQTFEGHEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp TCCEEEEEECC-SSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTS-EE--EEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred CCcEEEEEecC-CCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCc-eE--EEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence 87665432211 11334444432 45678999999999999876421 11 111111233443333331122233333
Q ss_pred c-CCCeEEEecC-Cc--EEEeeecccCceeeecccCCCCCCcEEEE-eCCeEEEEEEcCCCCeEEEEEeC-CCcccEEEE
Q 004094 333 S-DRPTVIYSSN-KK--LLYSNVNLKEVSHMCPFNSAAFPDSLAIA-KEGELTIGTIDDIQKLHIRSIPL-GEHPRRICH 406 (774)
Q Consensus 333 ~-~~p~~l~~~~-~~--~~~~~~~~~~i~~~~~f~~~~~~~~l~~~-~~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y 406 (774)
+ +....++..+ +. ..+..-....+..++ |........++.. .++.+.+..+.... ..+.+.- ...+..+++
T Consensus 160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~v~~~~~ 236 (814)
T 3mkq_A 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD-YYPLPDKPYMITASDDLTIKIWDYQTKS--CVATLEGHMSNVSFAVF 236 (814)
T ss_dssp ETTSEEEEEETTCSSCSEEEECCCTTCCCEEE-ECCSTTCCEEEEECTTSEEEEEETTTTE--EEEEEECCSSCEEEEEE
T ss_pred eCCCeEEEEECCCCcceeEEecCCCCCEEEEE-EEECCCCCEEEEEeCCCEEEEEECCCCc--EEEEEcCCCCCEEEEEE
Confidence 3 3334444322 22 222211113333332 2111111233333 36778888776532 3444442 356778999
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCce-EEEEEe
Q 004094 407 QEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV-YYCVGT 474 (774)
Q Consensus 407 ~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~-~i~VGT 474 (774)
+|..+.+++++.+ +.|+++|..+++.+..+... .+.+.++. +..++.. ++++|.
T Consensus 237 ~~~~~~l~~~~~d----------g~v~vwd~~~~~~~~~~~~~-~~~v~~~~---~~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 237 HPTLPIIISGSED----------GTLKIWNSSTYKVEKTLNVG-LERSWCIA---THPTGRKNYIASGF 291 (814)
T ss_dssp CSSSSEEEEEETT----------SCEEEEETTTCSEEEEECCS-SSSEEEEE---ECTTCGGGEEEEEE
T ss_pred cCCCCEEEEEeCC----------CeEEEEECCCCcEEEEeecC-CCcEEEEE---EccCCCceEEEEEe
Confidence 9998877766644 36999999988888776654 34555543 3333333 566665
No 12
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=98.51 E-value=0.00026 Score=73.66 Aligned_cols=279 Identities=9% Similarity=0.050 Sum_probs=154.5
Q ss_pred EeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCe---eEEecC-CCccCceeEEeeeecCeeEEEEE
Q 004094 210 KHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNL---ITKEHL-GGEIIPRSVLLCAFEGISYLLCA 285 (774)
Q Consensus 210 ~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~---~~~~~l-~~~~~p~si~~~~~~~~~~L~vg 285 (774)
........|+|+++.+ ...+++.+. +|.+.+|++...+. +..... .......++.+.+ +..+|++|
T Consensus 46 ~~~~h~~~v~~~~~~~------~~~~l~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~ 115 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISN------PTRHVYTGG--KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVG 115 (337)
T ss_dssp EEECCSSCCCEEEECS------SSSEEEEEC--BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEE
T ss_pred eeccCCCceEEEEEec------CCcEEEEcC--CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC--CCCEEEEE
Confidence 3345678899999965 245666554 89999999975332 111111 1112233444332 45678999
Q ss_pred eCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecC-CCeEEEecC-CcE-EEeeecccCceeeecc
Q 004094 286 LGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASD-RPTVIYSSN-KKL-LYSNVNLKEVSHMCPF 362 (774)
Q Consensus 286 l~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~-~p~~l~~~~-~~~-~~~~~~~~~i~~~~~f 362 (774)
..||.+..|.+.... ........-...++.-..+.. +.+.+++.+. ....++..+ ++. ...+.....+.+++ |
T Consensus 116 ~~d~~i~~~d~~~~~--~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~-~ 191 (337)
T 1gxr_A 116 GEASTLSIWDLAAPT--PRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID-I 191 (337)
T ss_dssp ESSSEEEEEECCCC----EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE-E
T ss_pred cCCCcEEEEECCCCC--cceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEE-E
Confidence 999999999876432 111111111223332222221 2234444443 333344333 222 11111223343332 2
Q ss_pred cCCCCCCcEEEEe-CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCce
Q 004094 363 NSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFE 441 (774)
Q Consensus 363 ~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~ 441 (774)
+. ..+.++... ++.+.+..+.... ..+.++....+..++++|+.+.+++++.+. .++++|..+.+
T Consensus 192 ~~--~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~----------~i~~~~~~~~~ 257 (337)
T 1gxr_A 192 SN--DGTKLWTGGLDNTVRSWDLREGR--QLQQHDFTSQIFSLGYCPTGEWLAVGMESS----------NVEVLHVNKPD 257 (337)
T ss_dssp CT--TSSEEEEEETTSEEEEEETTTTE--EEEEEECSSCEEEEEECTTSSEEEEEETTS----------CEEEEETTSSC
T ss_pred CC--CCCEEEEEecCCcEEEEECCCCc--eEeeecCCCceEEEEECCCCCEEEEEcCCC----------cEEEEECCCCC
Confidence 21 112344443 6788888776543 445566777889999999998888776442 68899987766
Q ss_pred EEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCe
Q 004094 442 FISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGK 520 (774)
Q Consensus 442 ~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~ 520 (774)
... + ......+.++. +.. ..+++++|+ ..|.+.+|++..++.. ......++|++++-- ++.
T Consensus 258 ~~~-~-~~~~~~v~~~~---~~~-~~~~l~~~~----------~dg~i~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~ 319 (337)
T 1gxr_A 258 KYQ-L-HLHESCVLSLK---FAY-CGKWFVSTG----------KDNLLNAWRTPYGASI--FQSKESSSVLSCDISVDDK 319 (337)
T ss_dssp EEE-E-CCCSSCEEEEE---ECT-TSSEEEEEE----------TTSEEEEEETTTCCEE--EEEECSSCEEEEEECTTSC
T ss_pred eEE-E-cCCccceeEEE---ECC-CCCEEEEec----------CCCcEEEEECCCCeEE--EEecCCCcEEEEEECCCCC
Confidence 532 1 12233444443 443 345777776 2489999998866544 334568889988754 344
Q ss_pred -EEEEE-CCEEEEEEe
Q 004094 521 -LLAAI-NQKIQLYKW 534 (774)
Q Consensus 521 -lv~~~-g~~l~v~~~ 534 (774)
|+++. .+.|++|++
T Consensus 320 ~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 320 YIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEEETTSCEEEEEE
T ss_pred EEEEecCCCeEEEEEE
Confidence 44443 357888774
No 13
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.48 E-value=0.0012 Score=72.06 Aligned_cols=302 Identities=10% Similarity=0.087 Sum_probs=169.7
Q ss_pred EEEEEECCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCe
Q 004094 177 VNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNL 256 (774)
Q Consensus 177 I~~a~~~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~ 256 (774)
|.+.+.++..++.+..++.+..+.+..++.... -......|.|+++. ...++.|.. ||.|.+|++.+.+.
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~--------~~~l~s~~~-dg~i~vwd~~~~~~ 191 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT-LVGHTGGVWSSQMR--------DNIIISGST-DRTLKVWNAETGEC 191 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEEEE-CCCCSSCEEEEEEE--------TTEEEEEET-TSCEEEEETTTTEE
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEEEE-EcCCCCCEEEEEec--------CCEEEEEeC-CCeEEEEECCcCcE
Confidence 555556778888888888888888766543322 12345678899884 357777777 99999999988766
Q ss_pred eEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEec-CC
Q 004094 257 ITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-DR 335 (774)
Q Consensus 257 ~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~ 335 (774)
+....-. .....++.+ . ...|+.|..||.+..|.+.. +.. .....-...++.-..+ ++ ..+++.+ +.
T Consensus 192 ~~~~~~h-~~~v~~~~~---~-~~~l~s~s~dg~i~~wd~~~--~~~--~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg 259 (445)
T 2ovr_B 192 IHTLYGH-TSTVRCMHL---H-EKRVVSGSRDATLRVWDIET--GQC--LHVLMGHVAAVRCVQY--DG-RRVVSGAYDF 259 (445)
T ss_dssp EEEECCC-SSCEEEEEE---E-TTEEEEEETTSEEEEEESSS--CCE--EEEEECCSSCEEEEEE--CS-SCEEEEETTS
T ss_pred EEEECCC-CCcEEEEEe---c-CCEEEEEeCCCEEEEEECCC--CcE--EEEEcCCcccEEEEEE--CC-CEEEEEcCCC
Confidence 5432211 112223322 2 35689999999999998654 221 1111222334433222 22 3344443 33
Q ss_pred CeEEEecC-Cc-EEEeeecccCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCCCCeEEEEEeCC-CcccEEEEecCCC
Q 004094 336 PTVIYSSN-KK-LLYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLG-EHPRRICHQEQSR 411 (774)
Q Consensus 336 p~~l~~~~-~~-~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~-~tp~~i~y~~~~~ 411 (774)
...++..+ ++ +.........+.+++. ....++... ++.+++..+.+... .+.+.-. ..+..+.++ .+
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~--~~ 330 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHTNRVYSLQF-----DGIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSGMELK--DN 330 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE-----CSSEEEEEETTSCEEEEETTTCCE--EEEECCCCSCEEEEEEE--TT
T ss_pred EEEEEECCCCcEeEEecCCCCceEEEEE-----CCCEEEEEeCCCeEEEEECCCCCE--EEEEcCCcccEEEEEEe--CC
Confidence 33344322 22 1111112233444432 122344333 67888888776432 2333322 223344443 34
Q ss_pred EEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC--CCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEE
Q 004094 412 TFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD--TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRI 489 (774)
Q Consensus 412 ~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~--~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl 489 (774)
.+++++.+ +.|+++|..+.+.+..+... ....+.++. +. ..++++|+ ..|.|
T Consensus 331 ~l~~~~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~---~~---~~~l~s~~----------~dg~v 384 (445)
T 2ovr_B 331 ILVSGNAD----------STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ---FN---KNFVITSS----------DDGTV 384 (445)
T ss_dssp EEEEEETT----------SCEEEEETTTCCEEEEECSTTSCSSCEEEEE---EC---SSEEEEEE----------TTSEE
T ss_pred EEEEEeCC----------CeEEEEECCCCcEEEEEccCCCCCCCEEEEE---EC---CCEEEEEe----------CCCeE
Confidence 55555433 37999999888888777653 334455554 32 46788887 34899
Q ss_pred EEEEEeCCeE-EEEEE---EeecCceeEeccccCe-EEEEEC--C----EEEEEEee
Q 004094 490 LVFIVEDGKL-QLIAE---KETKGAVYSLNAFNGK-LLAAIN--Q----KIQLYKWM 535 (774)
Q Consensus 490 ~v~~i~~~kl-~~~~~---~~~~g~v~~i~~~~~~-lv~~~g--~----~l~v~~~~ 535 (774)
.+|++..+++ ..+.. ....++|++++--.+. ++++.+ + ++++++|+
T Consensus 385 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 385 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred EEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 9999986653 33322 2457889998866444 333322 2 47787764
No 14
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=98.47 E-value=0.0047 Score=70.64 Aligned_cols=461 Identities=11% Similarity=0.071 Sum_probs=226.7
Q ss_pred cCcEEEEecCCCceeeeEeCCCCCcEEEEEEC--CCEEEEEEcCCeEEEEEEcCce-EEEEEeccCCceeEEEEeCCCCC
Q 004094 152 SGSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGI-LTEVKHAQLEYEISCLDINPIGE 228 (774)
Q Consensus 152 ~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~-l~~~~~~~l~~~is~l~~~~~~~ 228 (774)
.+.|++.+.+.++....+.. ....|.+++.+ +..++.+..++.+..+.+..++ .....-......|.++++++-
T Consensus 38 ~~~v~l~~~~~~~~~~~~~~-h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~d-- 114 (611)
T 1nr0_A 38 GTSVYTVPVGSLTDTEIYTE-HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE-- 114 (611)
T ss_dssp TTEEEEEETTCSSCCEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT--
T ss_pred CCEEEEecCCCcccCeEecC-CCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCC--
Confidence 45566676654444444432 23468888776 4466666667888888775421 111112245678999999752
Q ss_pred CCCCcceEEEEEecC---CEEEEEECCCCCeeEEecCCC-ccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccc
Q 004094 229 NPSYSQIAAVGMWTD---ISVRIFSLPDLNLITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELT 304 (774)
Q Consensus 229 ~~~~~~~~~vg~~~~---~~i~i~~l~~~~~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~ 304 (774)
...++.+...+ +.+.+|+..... ..+.. .....++.+.+- +...|+.|..||.+..|+... +.+
T Consensus 115 ----g~~l~~~~~~~~~~~~v~~wd~~~~~----~~l~gh~~~v~~v~f~p~-~~~~l~s~s~D~~v~lwd~~~--~~~- 182 (611)
T 1nr0_A 115 ----SKRIAAVGEGRERFGHVFLFDTGTSN----GNLTGQARAMNSVDFKPS-RPFRIISGSDDNTVAIFEGPP--FKF- 182 (611)
T ss_dssp ----SCEEEEEECCSSCSEEEEETTTCCBC----BCCCCCSSCEEEEEECSS-SSCEEEEEETTSCEEEEETTT--BEE-
T ss_pred ----CCEEEEEECCCCceeEEEEeeCCCCc----ceecCCCCCceEEEECCC-CCeEEEEEeCCCeEEEEECCC--CeE-
Confidence 45566554421 467777643211 11211 112344444321 234688899999999987432 211
Q ss_pred cceeeecCCCCeEEEEEEeCCcceEEEec-CCCeEEEecC-CcE-EEe-e------ecccCceeeecccCCCCCCcEEEE
Q 004094 305 DRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYSSN-KKL-LYS-N------VNLKEVSHMCPFNSAAFPDSLAIA 374 (774)
Q Consensus 305 ~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~l~~~~-~~~-~~~-~------~~~~~i~~~~~f~~~~~~~~l~~~ 374 (774)
.+...--..+|.=..|..+ ...+...| |....++... ++. ... . -+...+.+++ |+. ....++..
T Consensus 183 -~~~l~~H~~~V~~v~fspd-g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~-~sp--dg~~l~s~ 257 (611)
T 1nr0_A 183 -KSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT-WSP--DGTKIASA 257 (611)
T ss_dssp -EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE-ECT--TSSEEEEE
T ss_pred -eeeeccccCceEEEEECCC-CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEE-ECC--CCCEEEEE
Confidence 1111111233433333322 22232223 4444455422 222 111 0 0112233322 321 11224433
Q ss_pred e-CCeEEEEEEcCCCCeEEEEEeCCCc----ccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC
Q 004094 375 K-EGELTIGTIDDIQKLHIRSIPLGEH----PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 449 (774)
Q Consensus 375 ~-~~~l~i~~l~~~~~~~~~~i~l~~t----p~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~ 449 (774)
. ++.+++..+.+.. ..++++.+.. ...+.+ ..+.++.+..+ ..++++|+.+.+.+..+ ..
T Consensus 258 s~D~~v~lWd~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d----------~~i~~~~~~~~~~~~~~-~g 322 (611)
T 1nr0_A 258 SADKTIKIWNVATLK--VEKTIPVGTRIEDQQLGIIW--TKQALVSISAN----------GFINFVNPELGSIDQVR-YG 322 (611)
T ss_dssp ETTSEEEEEETTTTE--EEEEEECCSSGGGCEEEEEE--CSSCEEEEETT----------CCEEEEETTTTEEEEEE-CC
T ss_pred eCCCeEEEEeCCCCc--eeeeecCCCCccceeEEEEE--cCCEEEEEeCC----------CcEEEEeCCCCCcceEE-cC
Confidence 3 6788888876542 3444554422 222333 33444444332 36888998777644332 23
Q ss_pred CCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEecccc-CeEEE-EECC
Q 004094 450 TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFN-GKLLA-AINQ 527 (774)
Q Consensus 450 ~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~-~~lv~-~~g~ 527 (774)
....+.++. +.. ...+++.|. ..|.+.+|++..++........+.+.|.+++.-. +.++. +..+
T Consensus 323 h~~~v~~l~---~sp-dg~~l~s~s----------~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~ 388 (611)
T 1nr0_A 323 HNKAITALS---SSA-DGKTLFSAD----------AEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDD 388 (611)
T ss_dssp CSSCEEEEE---ECT-TSSEEEEEE----------TTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTT
T ss_pred CCCCEEEEE---EeC-CCCEEEEEe----------CCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCC
Confidence 344555554 443 345666665 2367888887655443322223455566655432 33332 2234
Q ss_pred EEEEEEeeecC---------------------------------------CCchhhhhhcccccceEEEEEEEeCCEEEE
Q 004094 528 KIQLYKWMLRD---------------------------------------DGTRELQSECGHHGHILALYVQTRGDFIVV 568 (774)
Q Consensus 528 ~l~v~~~~~~~---------------------------------------~~~~~l~~~~~~~~~~~~~~l~~~~~~I~v 568 (774)
.+++++..... .+. +... ........+.++..+.++++
T Consensus 389 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~--~~~~-~~~~~v~~va~spdg~~las 465 (611)
T 1nr0_A 389 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEV-PISYNSSCVALSNDKQFVAV 465 (611)
T ss_dssp EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEE-ECSSCEEEEEECTTSCEEEE
T ss_pred ceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCc--eeee-ecCCCceEEEEeCCCCEEEE
Confidence 55554321000 000 0000 00111222333345779999
Q ss_pred EeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCe-EEEEccCCcEEEEeeCCCCCCccccceeeeE--EEEEc
Q 004094 569 GDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI-YLGAENNFNLFTVRKNSEGATDEERGRLEVV--GEYHL 645 (774)
Q Consensus 569 gD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~-~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~--~~f~l 645 (774)
|..-..|.++..+ ...+..+....++..++++.|-.++. ++.++.++.+.+++.... .++... ...|
T Consensus 466 gs~D~~v~lwd~~--~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~-------~~~~~~~~~~~H- 535 (611)
T 1nr0_A 466 GGQDSKVHVYKLS--GASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN-------FELAHTNSWTFH- 535 (611)
T ss_dssp EETTSEEEEEEEE--TTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT-------TEESCCCCCCCC-
T ss_pred eCCCCeEEEEEcc--CCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCC-------Cceeeeeeeeec-
Confidence 9988888776553 34443333333556788888766555 557888999999987531 111111 1112
Q ss_pred CcccceEEeeeeeecCCCCCCCCccEEEEEccccceEEEE
Q 004094 646 GEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIA 685 (774)
Q Consensus 646 g~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gsi~~i~ 685 (774)
...|+++.. . .....++.++.||.|...-
T Consensus 536 ~~~V~~v~f---s--------pdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 536 TAKVACVSW---S--------PDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp SSCEEEEEE---C--------TTSSEEEEEETTSCEEEEE
T ss_pred ccceeEEEE---C--------CCCCEEEEEECCCcEEEEE
Confidence 234544432 1 2346788889999988664
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=98.45 E-value=0.0005 Score=72.37 Aligned_cols=277 Identities=13% Similarity=0.098 Sum_probs=156.2
Q ss_pred CCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEE
Q 004094 214 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLN 293 (774)
Q Consensus 214 l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~ 293 (774)
....|.|+++.+ ...+++.|.. |+.|.||++.+.+.+....... ....++.+.+ +..+|+.|..||.+..
T Consensus 54 H~~~v~~~~~s~------d~~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~~-~~v~~~~~s~--~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 54 HLAKIYAMHWGT------DSRLLLSASQ-DGKLIIWDSYTTNKVHAIPLRS-SWVMTCAYAP--SGNYVACGGLDNICSI 123 (340)
T ss_dssp CSSCEEEEEECT------TSSEEEEEET-TTEEEEEETTTCCEEEEEECSS-SCEEEEEECT--TSSEEEEEETTCEEEE
T ss_pred CCCceEEEEECC------CCCEEEEEeC-CCcEEEEECCCCCcceEeecCC-ccEEEEEECC--CCCEEEEEeCCCeEEE
Confidence 456799999965 2567777777 9999999998766654332221 1223333332 4568899999999999
Q ss_pred EEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEec-CCCeEEEecC-CcE-EEeeecccCceeeecccCCCCCCc
Q 004094 294 FLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYSSN-KKL-LYSNVNLKEVSHMCPFNSAAFPDS 370 (774)
Q Consensus 294 y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~l~~~~-~~~-~~~~~~~~~i~~~~~f~~~~~~~~ 370 (774)
|.+....+.....+...-...++.-..+..+ +.++..+ +....++..+ +.. ....-....+.+++ |+. ....
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~-~~~--~~~~ 198 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS-LAP--DTRL 198 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE-ECT--TSSE
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCC--CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEE-ECC--CCCE
Confidence 9876433222222222212234433333322 2344333 4444444433 222 11111223344433 221 1122
Q ss_pred EEEE-eCCeEEEEEEcCCCCeEEEEEeC-CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEEC
Q 004094 371 LAIA-KEGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPL 448 (774)
Q Consensus 371 l~~~-~~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~ 448 (774)
++.. .++.+++..+.... ..+.+.- ...+..++++|+.+.++.++.+. .++++|..+.+.+..+..
T Consensus 199 l~sg~~d~~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~----------~v~iwd~~~~~~~~~~~~ 266 (340)
T 1got_B 199 FVSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFPNGNAFATGSDDA----------TCRLFDLRADQELMTYSH 266 (340)
T ss_dssp EEEEETTSCEEEEETTTCS--EEEEECCCSSCEEEEEECTTSSEEEEEETTS----------CEEEEETTTTEEEEEECC
T ss_pred EEEEeCCCcEEEEECCCCe--eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC----------cEEEEECCCCcEEEEEcc
Confidence 3333 36888888876543 2333432 34577899999988887776543 799999988887766654
Q ss_pred CCC-ceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCe-EEEEE
Q 004094 449 DTF-EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGK-LLAAI 525 (774)
Q Consensus 449 ~~~-E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~-lv~~~ 525 (774)
+.. ..+.++ .+.. ...+++.|+ ..|.+.+|++...+.... -..+.++|++++-- +|. |+.+.
T Consensus 267 ~~~~~~v~~~---~~s~-~g~~l~~g~----------~d~~i~vwd~~~~~~~~~-~~~h~~~v~~~~~s~dg~~l~s~s 331 (340)
T 1got_B 267 DNIICGITSV---SFSK-SGRLLLAGY----------DDFNCNVWDALKADRAGV-LAGHDNRVSCLGVTDDGMAVATGS 331 (340)
T ss_dssp TTCCSCEEEE---EECT-TSSEEEEEE----------TTSEEEEEETTTCCEEEE-EECCSSCEEEEEECTTSSCEEEEE
T ss_pred CCcccceEEE---EECC-CCCEEEEEC----------CCCeEEEEEcccCcEeeE-eecCCCcEEEEEEcCCCCEEEEEc
Confidence 322 234443 4543 356788886 348999999875543221 13468899998855 444 44333
Q ss_pred -CCEEEEE
Q 004094 526 -NQKIQLY 532 (774)
Q Consensus 526 -g~~l~v~ 532 (774)
.+.|++|
T Consensus 332 ~D~~i~iW 339 (340)
T 1got_B 332 WDSFLKIW 339 (340)
T ss_dssp TTSCEEEE
T ss_pred CCccEEec
Confidence 3567775
No 16
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=98.43 E-value=0.00033 Score=75.58 Aligned_cols=277 Identities=6% Similarity=0.050 Sum_probs=157.2
Q ss_pred EEEECCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeE
Q 004094 179 VATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLIT 258 (774)
Q Consensus 179 ~a~~~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~ 258 (774)
+.+.++..++.+..++.+..+++..++............|+|+++.+ ...++++|.+ +|.+.+|++.+.+.+.
T Consensus 98 ~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~------~~~~l~~~~~-dg~i~iwd~~~~~~~~ 170 (401)
T 4aez_A 98 LLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH------DGSFLSVGLG-NGLVDIYDVESQTKLR 170 (401)
T ss_dssp CEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECT------TSSEEEEEET-TSCEEEEETTTCCEEE
T ss_pred EEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC------CCCEEEEECC-CCeEEEEECcCCeEEE
Confidence 34444444444445777777777766655544444577899999975 2568888888 9999999998766654
Q ss_pred EecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecC-CCe
Q 004094 259 KEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASD-RPT 337 (774)
Q Consensus 259 ~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~-~p~ 337 (774)
...-. .....++.. . ...|+.|..||.+..|.+...... .....-...++.-..+.. +...+++.+. ...
T Consensus 171 ~~~~~-~~~v~~~~~---~-~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v 241 (401)
T 4aez_A 171 TMAGH-QARVGCLSW---N-RHVLSSGSRSGAIHHHDVRIANHQ---IGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVV 241 (401)
T ss_dssp EECCC-SSCEEEEEE---E-TTEEEEEETTSEEEEEETTSSSCE---EEEEECCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred EecCC-CCceEEEEE---C-CCEEEEEcCCCCEEEEecccCcce---eeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeE
Confidence 32211 112233332 2 457899999999999887532111 111111223333222321 2233333333 334
Q ss_pred EEEecC-CcEEE-eeecccCceeeecccCCCCCCcEEEE----eCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCC
Q 004094 338 VIYSSN-KKLLY-SNVNLKEVSHMCPFNSAAFPDSLAIA----KEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSR 411 (774)
Q Consensus 338 ~l~~~~-~~~~~-~~~~~~~i~~~~~f~~~~~~~~l~~~----~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~ 411 (774)
.++..+ +.... ..-....+.+++ |+. ....++.+ .++.+.+..+.... ..+.+..+..+..+++++..+
T Consensus 242 ~iwd~~~~~~~~~~~~~~~~v~~~~-~~p--~~~~ll~~~~gs~d~~i~i~d~~~~~--~~~~~~~~~~v~~~~~s~~~~ 316 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHNAAVKAVA-WCP--WQSNLLATGGGTMDKQIHFWNAATGA--RVNTVDAGSQVTSLIWSPHSK 316 (401)
T ss_dssp EEEETTCSSEEEEECCCSSCCCEEE-ECT--TSTTEEEEECCTTTCEEEEEETTTCC--EEEEEECSSCEEEEEECSSSS
T ss_pred EEccCCCCCccEEecCCcceEEEEE-ECC--CCCCEEEEecCCCCCEEEEEECCCCC--EEEEEeCCCcEEEEEECCCCC
Confidence 444332 22211 111123333333 211 11234443 26788888877543 456667778899999999998
Q ss_pred EEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCC-ceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEE
Q 004094 412 TFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF-EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRIL 490 (774)
Q Consensus 412 ~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~-E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~ 490 (774)
.+++++... ...++++|..+.+.....++..+ ..+.++. +.. ...+++.|+ ..|.|.
T Consensus 317 ~l~~~~g~~--------dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~---~s~-dg~~l~s~~----------~dg~i~ 374 (401)
T 4aez_A 317 EIMSTHGFP--------DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSA---LSP-DGRILSTAA----------SDENLK 374 (401)
T ss_dssp EEEEEECTT--------TCEEEEEEEETTEEEEEEEEECCSSCCCEEE---ECT-TSSEEEEEC----------TTSEEE
T ss_pred eEEEEeecC--------CCcEEEEecCCccceeEEEecCCCCCEEEEE---ECC-CCCEEEEEe----------CCCcEE
Confidence 888765321 24788988877666655555433 3455543 333 345777775 348999
Q ss_pred EEEEeCCe
Q 004094 491 VFIVEDGK 498 (774)
Q Consensus 491 v~~i~~~k 498 (774)
+|++..++
T Consensus 375 iw~~~~~~ 382 (401)
T 4aez_A 375 FWRVYDGD 382 (401)
T ss_dssp EEECCC--
T ss_pred EEECCCCc
Confidence 99998654
No 17
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=98.42 E-value=0.0011 Score=70.76 Aligned_cols=288 Identities=14% Similarity=0.036 Sum_probs=160.1
Q ss_pred CcEEEEEECCCEEEEEEcCCeEEEEEEcCce-------EEEEEeccCCceeEEEEeCCCCCCCCCc---ceEEEEEecCC
Q 004094 175 YSVNVATANASQVLLATGGGHLVYLEIGDGI-------LTEVKHAQLEYEISCLDINPIGENPSYS---QIAAVGMWTDI 244 (774)
Q Consensus 175 ~~I~~a~~~~~~lvv~~~~~~~~~~~~~~~~-------l~~~~~~~l~~~is~l~~~~~~~~~~~~---~~~~vg~~~~~ 244 (774)
..|.+.+.++..++.+..++.+..+.+..++ +.... .....|+|+++.+.. .... .+++.|.. ++
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~--~~~g~~~~~l~s~~~-dg 91 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF--VHKSGLHHVDVLQAI--ERDAFELCLVATTSF-SG 91 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE--CCTTCEEEEEEEEEE--ETTTEEEEEEEEEET-TS
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEe--cCCCcEEEEEEeccc--ccCCccccEEEEEcC-CC
Confidence 4688888888888888778888888876643 33332 456779999986510 0013 56777777 99
Q ss_pred EEEEEECCCCCe-----eEEecCCC----ccCceeEEeeee--cCeeE-EEEEeCCCcEEEEEEecCC----C-ccccce
Q 004094 245 SVRIFSLPDLNL-----ITKEHLGG----EIIPRSVLLCAF--EGISY-LLCALGDGHLLNFLLNMKT----G-ELTDRK 307 (774)
Q Consensus 245 ~i~i~~l~~~~~-----~~~~~l~~----~~~p~si~~~~~--~~~~~-L~vgl~~G~l~~y~~~~~~----~-~l~~~~ 307 (774)
.|.+|++.+.+. +....... .....++.+... .+..+ |++|..||.+..|.+.... + .+....
T Consensus 92 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 171 (397)
T 1sq9_A 92 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 171 (397)
T ss_dssp CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccC
Confidence 999999876443 22211110 123344544411 23466 8899999999999987611 1 111100
Q ss_pred --eee-------cCCCCeEEEEEEeCCcceEEEecCCCeE-EEecC-CcE-EEeee---c---ccCceeeecccCCCCCC
Q 004094 308 --KVS-------LGTQPITLRTFSSKNTTHVFAASDRPTV-IYSSN-KKL-LYSNV---N---LKEVSHMCPFNSAAFPD 369 (774)
Q Consensus 308 --~~~-------lG~~pv~l~~~~~~~~~~v~~~~~~p~~-l~~~~-~~~-~~~~~---~---~~~i~~~~~f~~~~~~~ 369 (774)
... ....++.-..+. ....+++.+..-.+ ++..+ ++. ..... . ...+.+++ |+. ...
T Consensus 172 ~~~~~~~~~~~~~~~~~i~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~-~~~--~~~ 246 (397)
T 1sq9_A 172 TLELQGTVESPMTPSQFATSVDIS--ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK-FSP--QGS 246 (397)
T ss_dssp EEEEEEEECCSSSSCCCCCEEEEC--TTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE-ECS--STT
T ss_pred cceeeeeeccccCCCCCceEEEEC--CCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEE-ECC--CCC
Confidence 110 112233222222 22233333333333 33322 222 11121 1 23343333 221 122
Q ss_pred cEEEEe-C---CeEEEEEEcCCCCeEEEEEe--------------CCCcccEEEEecCCCEEEEEEeccCCCCCceeeeE
Q 004094 370 SLAIAK-E---GELTIGTIDDIQKLHIRSIP--------------LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHF 431 (774)
Q Consensus 370 ~l~~~~-~---~~l~i~~l~~~~~~~~~~i~--------------l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~ 431 (774)
.++... + +.+.+..+.... ..+.+. -...+..++++|+.+.++.++.+ ..
T Consensus 247 ~l~~~~~d~~~g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~ 314 (397)
T 1sq9_A 247 LLAIAHDSNSFGCITLYETEFGE--RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD----------GK 314 (397)
T ss_dssp EEEEEEEETTEEEEEEEETTTCC--EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT----------SE
T ss_pred EEEEEecCCCCceEEEEECCCCc--ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC----------Ce
Confidence 344433 4 678888876543 233443 34567889999988877766644 38
Q ss_pred EEEEECCCceEEEEEECC-----C---------------CceEEEEEEEEEcCCCc---------eEEEEEeeeeCCCCC
Q 004094 432 VRLLDDQTFEFISTYPLD-----T---------------FEYGCSILSCSFSDDSN---------VYYCVGTAYVLPEEN 482 (774)
Q Consensus 432 l~l~d~~~~~~i~~~~~~-----~---------------~E~~~si~~~~~~~~~~---------~~i~VGT~~~~~~e~ 482 (774)
|+++|..+++.+..+... . ...+.++. +..+++ ++++.|.
T Consensus 315 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~---~~~~g~~~~~~~~~~~~l~s~~-------- 383 (397)
T 1sq9_A 315 LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVK---FLKKGWRSGMGADLNESLCCVC-------- 383 (397)
T ss_dssp EEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEE---EECTTTSBSTTCTTSCEEEEEE--------
T ss_pred EEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEE---eccccccccccccccceEEEec--------
Confidence 999999999988887732 2 45566654 333332 6788776
Q ss_pred CCcceEEEEEEEeCC
Q 004094 483 EPTKGRILVFIVEDG 497 (774)
Q Consensus 483 ~~~~Grl~v~~i~~~ 497 (774)
..|.|.+|++..+
T Consensus 384 --~dg~i~iw~~~~g 396 (397)
T 1sq9_A 384 --LDRSIRWFREAGG 396 (397)
T ss_dssp --TTTEEEEEEEEC-
T ss_pred --CCCcEEEEEcCCC
Confidence 3489999998754
No 18
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=98.42 E-value=0.00039 Score=71.90 Aligned_cols=279 Identities=15% Similarity=0.151 Sum_probs=153.7
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEE
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLL 292 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~ 292 (774)
.....|+|+++.+ ...+++.|.. ++.+.+|++.+.+......- ......++.+.+ +..+|+.|..||.+.
T Consensus 21 gh~~~v~~~~~s~------~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~--~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 21 GHTKAVSSVKFSP------NGEWLASSSA-DKLIKIWGAYDGKFEKTISG-HKLGISDVAWSS--DSNLLVSASDDKTLK 90 (312)
T ss_dssp CCSSCEEEEEECT------TSSEEEEEET-TSCEEEEETTTCCEEEEECC-CSSCEEEEEECT--TSSEEEEEETTSEEE
T ss_pred ccCCcEEEEEECC------CCCEEEEeeC-CCeEEEEeCCCcccchhhcc-CCCceEEEEEcC--CCCEEEEECCCCEEE
Confidence 3456799999975 2467777777 99999999977655332111 011233443332 456789999999999
Q ss_pred EEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEec-CCCeEEEecC-Cc-EEEeeecccCceeeecccCCCCCC
Q 004094 293 NFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYSSN-KK-LLYSNVNLKEVSHMCPFNSAAFPD 369 (774)
Q Consensus 293 ~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~l~~~~-~~-~~~~~~~~~~i~~~~~f~~~~~~~ 369 (774)
.|++.. +.. .+...-...++.-..+.. ..+.++..+ +....++..+ ++ +...+....++.+++ |+. ..+
T Consensus 91 vwd~~~--~~~--~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~-~~~--~~~ 162 (312)
T 4ery_A 91 IWDVSS--GKC--LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-FNR--DGS 162 (312)
T ss_dssp EEETTT--CCE--EEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE-ECT--TSS
T ss_pred EEECCC--CcE--EEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEE-EcC--CCC
Confidence 997654 221 111122233343223321 223333333 3333344332 22 222222223343333 321 112
Q ss_pred cEEEEe-CCeEEEEEEcCCCCeEEEEEeC--CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEE
Q 004094 370 SLAIAK-EGELTIGTIDDIQKLHIRSIPL--GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTY 446 (774)
Q Consensus 370 ~l~~~~-~~~l~i~~l~~~~~~~~~~i~l--~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~ 446 (774)
.++... ++.+++..+..... .+.+.. ......++++|..+.+++++.+ ..|+++|..+.+.+..+
T Consensus 163 ~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~ 230 (312)
T 4ery_A 163 LIVSSSYDGLCRIWDTASGQC--LKTLIDDDNPPVSFVKFSPNGKYILAATLD----------NTLKLWDYSKGKCLKTY 230 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCE--EEEECCSSCCCEEEEEECTTSSEEEEEETT----------TEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCce--eeEEeccCCCceEEEEECCCCCEEEEEcCC----------CeEEEEECCCCcEEEEE
Confidence 333333 67888888765432 333322 2345668899998877776654 37999999988888777
Q ss_pred ECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCe-EEEE
Q 004094 447 PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGK-LLAA 524 (774)
Q Consensus 447 ~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~-lv~~ 524 (774)
.-..++....... +......+++.|. ..|.|++|++..+++.... ....++|++++-- .+. ++.+
T Consensus 231 ~~~~~~~~~~~~~--~~~~~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~ 297 (312)
T 4ery_A 231 TGHKNEKYCIFAN--FSVTGGKWIVSGS----------EDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASA 297 (312)
T ss_dssp CSSCCSSSCCCEE--EECSSSCEEEECC----------TTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECSSSSEEEEE
T ss_pred EecCCceEEEEEE--EEeCCCcEEEEEC----------CCCEEEEEECCCchhhhhh-hccCCcEEEEeecCcCCceEEE
Confidence 6544443211111 2223456777665 3489999998765543221 2357788887754 344 4444
Q ss_pred E---CCEEEEEEe
Q 004094 525 I---NQKIQLYKW 534 (774)
Q Consensus 525 ~---g~~l~v~~~ 534 (774)
. ...|.+|+.
T Consensus 298 ~~~~d~~i~~W~~ 310 (312)
T 4ery_A 298 ALENDKTIKLWKS 310 (312)
T ss_dssp ECTTTCCEEEEEC
T ss_pred EccCCccEEEecC
Confidence 3 467888763
No 19
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=98.41 E-value=4.8e-05 Score=81.00 Aligned_cols=284 Identities=11% Similarity=0.097 Sum_probs=147.5
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEE------ecCCEEEEEECCCCCeeEE---ecCCCccCceeEEeeeecCeeEEE
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGM------WTDISVRIFSLPDLNLITK---EHLGGEIIPRSVLLCAFEGISYLL 283 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~------~~~~~i~i~~l~~~~~~~~---~~l~~~~~p~si~~~~~~~~~~L~ 283 (774)
..+..|.|++++| + ..+++.|. | |+.+.+|+.++...... ..........++++. ....++
T Consensus 40 ~H~~~V~~v~fSp--D----G~~las~s~d~~~~w-d~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s---~d~~~l 109 (357)
T 4g56_B 40 CMEVQIGAVRYRR--D----GALLLAASSLSSRTW-GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWV---SEKGIL 109 (357)
T ss_dssp CCCSEEEEEEECS--S----SCEEEEEECSSSSSC-CEEEEEESSCC---CGGGCSEEEECSSCEEEEEEE---TTTEEE
T ss_pred cccCCEEEEEECC--C----CCEEEEEcCCCCccc-cCeEEEEECCCCCcceeEecccCCCCCCEEEEEEc---CCCCEE
Confidence 3567799999976 2 45666654 6 88999999876432110 001101112333333 234577
Q ss_pred EEeCCCcEEEEEEecCCCccccceeeecC-CCCeEEEEEEeCCcceEEEec-CCCeEEEecC-CcE-EEeeecccCceee
Q 004094 284 CALGDGHLLNFLLNMKTGELTDRKKVSLG-TQPITLRTFSSKNTTHVFAAS-DRPTVIYSSN-KKL-LYSNVNLKEVSHM 359 (774)
Q Consensus 284 vgl~~G~l~~y~~~~~~~~l~~~~~~~lG-~~pv~l~~~~~~~~~~v~~~~-~~p~~l~~~~-~~~-~~~~~~~~~i~~~ 359 (774)
++..||.+..|++....... ..+....| ..+|.-..+.. +...++..+ +....++..+ ++. .........+.++
T Consensus 110 ~~s~dg~v~lWd~~~~~~~~-~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v 187 (357)
T 4g56_B 110 VASDSGAVELWEILEKESLL-VNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCV 187 (357)
T ss_dssp EEETTSCEEEC--------C-CCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EEECCCEEEEeeccccceeE-EEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 88999999998876432111 11111122 23443333322 223343333 3334444333 322 1112222344443
Q ss_pred ecccCCCCCCcEEEEe-CCeEEEEEEcCCCCeEEEEE-eCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEEC
Q 004094 360 CPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSI-PLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDD 437 (774)
Q Consensus 360 ~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i-~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~ 437 (774)
+ |... .+..++... ++.+++..+........... .-...+..++++|....+++..... ..|+++|.
T Consensus 188 ~-~s~~-~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d---------~~i~~wd~ 256 (357)
T 4g56_B 188 A-ACPG-KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET---------GNVSLVNI 256 (357)
T ss_dssp E-ECTT-CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS---------SCEEEEES
T ss_pred E-EccC-CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc---------cceeEEEC
Confidence 3 2211 111244333 67788877655433222111 1223467899998765444443321 36999999
Q ss_pred CCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEecc-
Q 004094 438 QTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNA- 516 (774)
Q Consensus 438 ~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~- 516 (774)
.+.+.+..+.... ..+.+++ +..++..+|+.|. ..|.|++|++..+++ +....+.++|++|+-
T Consensus 257 ~~~~~~~~~~~~~-~~v~~l~---~sp~~~~~lasgs----------~D~~i~iwd~~~~~~--~~~~~H~~~V~~vafs 320 (357)
T 4g56_B 257 KNPDSAQTSAVHS-QNITGLA---YSYHSSPFLASIS----------EDCTVAVLDADFSEV--FRDLSHRDFVTGVAWS 320 (357)
T ss_dssp SCGGGCEEECCCS-SCEEEEE---ECSSSSCCEEEEE----------TTSCEEEECTTSCEE--EEECCCSSCEEEEEEC
T ss_pred CCCcEeEEEeccc-eeEEEEE---EcCCCCCEEEEEe----------CCCEEEEEECCCCcE--eEECCCCCCEEEEEEe
Confidence 8887766655433 3455553 5545567787765 237899998876654 333467899999984
Q ss_pred -ccCeEEEEEC--CEEEEEEee
Q 004094 517 -FNGKLLAAIN--QKIQLYKWM 535 (774)
Q Consensus 517 -~~~~lv~~~g--~~l~v~~~~ 535 (774)
.++.++++.| .+|++|++.
T Consensus 321 P~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 321 PLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp SSSTTEEEEEETTSCEEEEECC
T ss_pred CCCCCEEEEEcCCCeEEEEECC
Confidence 4566555444 789998763
No 20
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=98.38 E-value=0.0016 Score=68.43 Aligned_cols=287 Identities=11% Similarity=0.042 Sum_probs=156.2
Q ss_pred ccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcE
Q 004094 212 AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHL 291 (774)
Q Consensus 212 ~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l 291 (774)
......|+|+++.+ ...+++.|.. +|.|.+|++.+.+.+....-. .....++.+.+ +..+|+.+..||.+
T Consensus 29 ~~h~~~v~~~~~s~------~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~--~~~~l~s~~~dg~i 98 (369)
T 3zwl_B 29 TGHERPLTQVKYNK------EGDLLFSCSK-DSSASVWYSLNGERLGTLDGH-TGTIWSIDVDC--FTKYCVTGSADYSI 98 (369)
T ss_dssp ECCSSCEEEEEECT------TSCEEEEEES-SSCEEEEETTTCCEEEEECCC-SSCEEEEEECT--TSSEEEEEETTTEE
T ss_pred EEeeceEEEEEEcC------CCCEEEEEeC-CCEEEEEeCCCchhhhhhhhc-CCcEEEEEEcC--CCCEEEEEeCCCeE
Confidence 34567899999975 2467887777 999999999887665432211 11233444332 45678999999999
Q ss_pred EEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCC------CeEEEec--C-CcEEEeeeccc--------
Q 004094 292 LNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDR------PTVIYSS--N-KKLLYSNVNLK-------- 354 (774)
Q Consensus 292 ~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~------p~~l~~~--~-~~~~~~~~~~~-------- 354 (774)
..|.+.. +... +... ...++.-..+.. ....+++.+.. ...++.. . ....+......
T Consensus 99 ~iwd~~~--~~~~--~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 99 KLWDVSN--GQCV--ATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp EEEETTT--CCEE--EEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred EEEECCC--CcEE--EEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 9987654 2221 1122 233333233322 23344444433 2223221 1 10111111111
Q ss_pred ----CceeeecccCCCCCCcEEEEe-CCeEEEEEEcCCCCeEEEEEeC-CCcccEEEEecCCCEEEEEEeccCCCCCcee
Q 004094 355 ----EVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESE 428 (774)
Q Consensus 355 ----~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~ 428 (774)
.+.+++ |+. ..+.++... ++.+.+..+....+ ..+.+.. ...+..++++|+.+.+++++.+
T Consensus 173 ~~~~~~~~~~-~~~--~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 239 (369)
T 3zwl_B 173 EGLDAATVAG-WST--KGKYIIAGHKDGKISKYDVSNNYE-YVDSIDLHEKSISDMQFSPDLTYFITSSRD--------- 239 (369)
T ss_dssp TTCCCEEEEE-ECG--GGCEEEEEETTSEEEEEETTTTTE-EEEEEECCSSCEEEEEECTTSSEEEEEETT---------
T ss_pred cCccceeEEE-EcC--CCCEEEEEcCCCEEEEEECCCCcE-eEEEEecCCCceeEEEECCCCCEEEEecCC---------
Confidence 111111 211 112344433 67788888765322 3444443 4567889999998887777644
Q ss_pred eeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCC----CCCCCcceEEEEEEEeCCeEEEEEE
Q 004094 429 MHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP----EENEPTKGRILVFIVEDGKLQLIAE 504 (774)
Q Consensus 429 ~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~----~e~~~~~Grl~v~~i~~~kl~~~~~ 504 (774)
..|+++|..+.+.+..+. ....+.++. +.. ...++++|+..... .........+.+|+...++.....
T Consensus 240 -~~i~v~d~~~~~~~~~~~--~~~~~~~~~---~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~- 311 (369)
T 3zwl_B 240 -TNSFLVDVSTLQVLKKYE--TDCPLNTAV---ITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV- 311 (369)
T ss_dssp -SEEEEEETTTCCEEEEEE--CSSCEEEEE---ECS-SSSEEEEEECCC-------------CEEEEEETTTCCEEEEE-
T ss_pred -ceEEEEECCCCceeeeec--CCCCceeEE---ecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe-
Confidence 379999999988888777 333444443 333 45677777643210 011112337788877655433222
Q ss_pred EeecCceeEeccc-cCe-EEEEE-CCEEEEEEee
Q 004094 505 KETKGAVYSLNAF-NGK-LLAAI-NQKIQLYKWM 535 (774)
Q Consensus 505 ~~~~g~v~~i~~~-~~~-lv~~~-g~~l~v~~~~ 535 (774)
....++|++++-. ++. |+.+. ...|++|+++
T Consensus 312 ~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 312 QGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred ecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 3457889988754 454 44433 4789998874
No 21
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=98.38 E-value=0.00092 Score=71.89 Aligned_cols=270 Identities=11% Similarity=0.078 Sum_probs=150.5
Q ss_pred cEEEEEEC--CCEEEEEEcCCeEEEEEEcCce-EEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECC
Q 004094 176 SVNVATAN--ASQVLLATGGGHLVYLEIGDGI-LTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 252 (774)
Q Consensus 176 ~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~-l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~ 252 (774)
.|.+.+.+ +..++.+..++.+..+. .+++ +..+ ......|.++++.+ ...+++.+.. ++.+.+|++.
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~--~~~~~~v~~~~~~~------~~~~l~~~~~-d~~i~iwd~~ 179 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVL--NFHRAPIVSVKWNK------DGTHIISMDV-ENVTILWNVI 179 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEE--CCCCSCEEEEEECT------TSSEEEEEET-TCCEEEEETT
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeec--cCCCccEEEEEECC------CCCEEEEEec-CCeEEEEECC
Confidence 68887765 44777777777787776 3333 2222 23467799999965 2467777777 9999999998
Q ss_pred CCCeeEEecCCCcc--------------CceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEE
Q 004094 253 DLNLITKEHLGGEI--------------IPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITL 318 (774)
Q Consensus 253 ~~~~~~~~~l~~~~--------------~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l 318 (774)
+.+.+......... ...++.+.+ ...+++|..+|.+..|.+... .. .........++.-
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~i~~~d~~~~--~~--~~~~~~~~~~i~~ 252 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD---DDKFVIPGPKGAIFVYQITEK--TP--TGKLIGHHGPISV 252 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEE---TTEEEEECGGGCEEEEETTCS--SC--SEEECCCSSCEEE
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcC---CCEEEEEcCCCeEEEEEcCCC--ce--eeeeccCCCceEE
Confidence 76665433222110 023333332 346889999999999886542 11 1111222334433
Q ss_pred EEEEeCCcceEEEecCCC-eEEEecC-Cc-EEEeeecccCceeeecccCCCCCCcEE-EE-eCCeEEEEEEcCCCCeEEE
Q 004094 319 RTFSSKNTTHVFAASDRP-TVIYSSN-KK-LLYSNVNLKEVSHMCPFNSAAFPDSLA-IA-KEGELTIGTIDDIQKLHIR 393 (774)
Q Consensus 319 ~~~~~~~~~~v~~~~~~p-~~l~~~~-~~-~~~~~~~~~~i~~~~~f~~~~~~~~l~-~~-~~~~l~i~~l~~~~~~~~~ 393 (774)
..+.. +...+++.+... ..++..+ ++ .....-....+.+++ |+ +++++ .. .++.+.+..+.... ...
T Consensus 253 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~-~~----~~~~l~~~~~d~~i~i~d~~~~~--~~~ 324 (425)
T 1r5m_A 253 LEFND-TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSAS-WV----GDDKVISCSMDGSVRLWSLKQNT--LLA 324 (425)
T ss_dssp EEEET-TTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEE-EE----TTTEEEEEETTSEEEEEETTTTE--EEE
T ss_pred EEECC-CCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEE-EC----CCCEEEEEeCCCcEEEEECCCCc--EeE
Confidence 33332 223444444333 3333322 11 111111223333333 22 23233 33 36788888876543 334
Q ss_pred EEeC-CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCce--------------------EEEEEECCCCc
Q 004094 394 SIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFE--------------------FISTYPLDTFE 452 (774)
Q Consensus 394 ~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~--------------------~i~~~~~~~~E 452 (774)
.+.. ...+..++++|+.+.+++++.+. .|+++|..+.+ .+..+......
T Consensus 325 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg----------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (425)
T 1r5m_A 325 LSIVDGVPIFAGRISQDGQKYAVAFMDG----------QVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDN 394 (425)
T ss_dssp EEECTTCCEEEEEECTTSSEEEEEETTS----------CEEEEECHHHHC--------------CEECCEEEEECCTTCC
T ss_pred ecccCCccEEEEEEcCCCCEEEEEECCC----------eEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccC
Confidence 4443 45678899999988887776542 67777776655 55555544333
Q ss_pred -eEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEE
Q 004094 453 -YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIV 494 (774)
Q Consensus 453 -~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i 494 (774)
.+.++. +..+ ..++++|+. .|.|++|++
T Consensus 395 ~~v~~~~---~s~~-~~~l~~~~~----------dg~i~iw~~ 423 (425)
T 1r5m_A 395 DYIFDLS---WNCA-GNKISVAYS----------LQEGSVVAI 423 (425)
T ss_dssp CCEEEEE---ECTT-SSEEEEEES----------SSCCEEEEC
T ss_pred CceEEEE---ccCC-CceEEEEec----------CceEEEEee
Confidence 566654 4433 457887762 378888876
No 22
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=98.37 E-value=0.00029 Score=73.98 Aligned_cols=291 Identities=12% Similarity=0.124 Sum_probs=157.1
Q ss_pred CcEEEEEECC-C-EEEEEEc----CCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEE
Q 004094 175 YSVNVATANA-S-QVLLATG----GGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRI 248 (774)
Q Consensus 175 ~~I~~a~~~~-~-~lvv~~~----~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i 248 (774)
..|.+++.++ + .++++.+ ++.+..+.+..++............|+|+++.+... ...+++.|.. +|.+.+
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~l~~~~~-dg~i~i 94 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSL---QQRYLATGDF-GGNLHI 94 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCT---TTCCEEEEET-TSCEEE
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCC---CCceEEEecC-CCeEEE
Confidence 4677777663 2 4444432 567777788776555444445567899999975210 1367888877 999999
Q ss_pred EECCCCC-eeEEecCCCccCceeEEeee---e-cCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEe
Q 004094 249 FSLPDLN-LITKEHLGGEIIPRSVLLCA---F-EGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSS 323 (774)
Q Consensus 249 ~~l~~~~-~~~~~~l~~~~~p~si~~~~---~-~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~ 323 (774)
|++.+.+ .+....-. .....++.... + .+..+|+.|..||.+..|.+.... .++......
T Consensus 95 wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~-------------~~~~~~~~~- 159 (357)
T 3i2n_A 95 WNLEAPEMPVYSVKGH-KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD-------------DPVANMEPV- 159 (357)
T ss_dssp ECTTSCSSCSEEECCC-SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS-------------SCSEEECCC-
T ss_pred EeCCCCCccEEEEEec-ccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC-------------Ccceecccc-
Confidence 9998655 33221110 11223332221 1 234578999999999988765321 011100000
Q ss_pred CCc--ceEEEecCCCeEEEecCCcEEEeeecccCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCCCCeEEEEEeCCCc
Q 004094 324 KNT--THVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLGEH 400 (774)
Q Consensus 324 ~~~--~~v~~~~~~p~~l~~~~~~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~t 400 (774)
.+. ..+.. +.+.+ .|+. ....++... ++.+.+..+..... .........
T Consensus 160 ~~~~~~~v~~--------------~~~~~----------~~~~--~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~ 211 (357)
T 3i2n_A 160 QGENKRDCWT--------------VAFGN----------AYNQ--EERVVCAGYDNGDIKLFDLRNMAL--RWETNIKNG 211 (357)
T ss_dssp TTSCCCCEEE--------------EEEEC----------CCC---CCCEEEEEETTSEEEEEETTTTEE--EEEEECSSC
T ss_pred CCCCCCceEE--------------EEEEe----------ccCC--CCCEEEEEccCCeEEEEECccCce--eeecCCCCc
Confidence 000 00000 00000 0110 011222222 45666666554322 333445667
Q ss_pred ccEEEEec---CCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEE---C-CCCceEEEEEEEEEcCCCceEEEEE
Q 004094 401 PRRICHQE---QSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP---L-DTFEYGCSILSCSFSDDSNVYYCVG 473 (774)
Q Consensus 401 p~~i~y~~---~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~---~-~~~E~~~si~~~~~~~~~~~~i~VG 473 (774)
+..+.++| ..+.+++++.+ ..++++|..+.+.+..+. + .....+.++. +..++..+++.|
T Consensus 212 v~~~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~l~~~ 278 (357)
T 3i2n_A 212 VCSLEFDRKDISMNKLVATSLE----------GKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVR---HLPQNRELFLTA 278 (357)
T ss_dssp EEEEEESCSSSSCCEEEEEEST----------TEEEEEEEEEEETTTEEEEEEEECCSSCEEEEE---EETTEEEEEEEE
T ss_pred eEEEEcCCCCCCCCEEEEECCC----------CeEEEEeCcCCCcccceeeeccCCCcCCEEEEE---ECCCCCcEEEEE
Confidence 78899998 77777776644 368888765443322222 1 2334455554 333344577777
Q ss_pred eeeeCCCCCCCcceEEEEEEEeCC-----------------eEEEEEEE-eecCceeEeccc-cC-eEEEEE--CCEEEE
Q 004094 474 TAYVLPEENEPTKGRILVFIVEDG-----------------KLQLIAEK-ETKGAVYSLNAF-NG-KLLAAI--NQKIQL 531 (774)
Q Consensus 474 T~~~~~~e~~~~~Grl~v~~i~~~-----------------kl~~~~~~-~~~g~v~~i~~~-~~-~lv~~~--g~~l~v 531 (774)
. ..|.+.+|++... +++.+... ...++|++++-- ++ +|+++. .+.|++
T Consensus 279 ~----------~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~i 348 (357)
T 3i2n_A 279 G----------GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRV 348 (357)
T ss_dssp E----------TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred e----------CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEE
Confidence 6 3489999999832 33444443 358899998754 33 465333 478999
Q ss_pred EEee
Q 004094 532 YKWM 535 (774)
Q Consensus 532 ~~~~ 535 (774)
|++.
T Consensus 349 w~~~ 352 (357)
T 3i2n_A 349 LIVT 352 (357)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8863
No 23
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=98.36 E-value=0.00049 Score=74.13 Aligned_cols=272 Identities=12% Similarity=0.132 Sum_probs=145.3
Q ss_pred CceeEEEEeCCCCCCCCCcc-eEEEEEecCCEEEEEEC----CCCCe------eEE--ecCCC-------ccCceeEEee
Q 004094 215 EYEISCLDINPIGENPSYSQ-IAAVGMWTDISVRIFSL----PDLNL------ITK--EHLGG-------EIIPRSVLLC 274 (774)
Q Consensus 215 ~~~is~l~~~~~~~~~~~~~-~~~vg~~~~~~i~i~~l----~~~~~------~~~--~~l~~-------~~~p~si~~~ 274 (774)
...|+|+++.+. .. ++++|.. ++.+.+|++ .+.+. ... ..+.. .....++.+.
T Consensus 45 ~~~v~~~~~s~~------~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 45 LDNIVSSTWNPL------DESILAYGEK-NSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp CSCCSEEEECSS------CTTEEEEEET-BTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred cCceEEEEECCC------CCcEEEEecC-CceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc
Confidence 467899999752 34 8888877 999999999 66552 211 11111 0122233332
Q ss_pred eecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecC-CCeEEEecC-CcE-EEeee
Q 004094 275 AFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASD-RPTVIYSSN-KKL-LYSNV 351 (774)
Q Consensus 275 ~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~-~p~~l~~~~-~~~-~~~~~ 351 (774)
+ +..+|++|..||.+..|. .++... +...-...++.-..+.. +...+++.+. ....++..+ ++. .....
T Consensus 118 ~--~~~~l~~~~~dg~i~i~~---~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 189 (425)
T 1r5m_A 118 H--DGNSIVTGVENGELRLWN---KTGALL--NVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFEL 189 (425)
T ss_dssp T--TSSEEEEEETTSCEEEEE---TTSCEE--EEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred C--CCCEEEEEeCCCeEEEEe---CCCCee--eeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeec
Confidence 2 456899999999999997 223211 11122233443333321 2334444443 333344332 222 11111
Q ss_pred cccC---------------ceeeecccCCCCCCc-EEEE-eCCeEEEEEEcCCCCeEEEEEe-CCCcccEEEEecCCCEE
Q 004094 352 NLKE---------------VSHMCPFNSAAFPDS-LAIA-KEGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTF 413 (774)
Q Consensus 352 ~~~~---------------i~~~~~f~~~~~~~~-l~~~-~~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~ 413 (774)
.... +.+++ |. ++. ++.. .++.+.+..+...... +.+. -...+..++++|..+.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~g~i~~~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l 262 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVE-WV----DDDKFVIPGPKGAIFVYQITEKTPT--GKLIGHHGPISVLEFNDTNKLL 262 (425)
T ss_dssp C---------------CCCBSCCE-EE----ETTEEEEECGGGCEEEEETTCSSCS--EEECCCSSCEEEEEEETTTTEE
T ss_pred cccCccceeeccccCCcceeeEEE-Ec----CCCEEEEEcCCCeEEEEEcCCCcee--eeeccCCCceEEEEECCCCCEE
Confidence 1111 21211 11 122 3333 3677888887664322 2232 23456789999998877
Q ss_pred EEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEE
Q 004094 414 AICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFI 493 (774)
Q Consensus 414 ~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~ 493 (774)
++++.+ ..++++|..+.+.+..+.- ....+.++. +..++ +++.|+ ..|.+++|+
T Consensus 263 ~~~~~d----------~~i~i~d~~~~~~~~~~~~-~~~~i~~~~---~~~~~--~l~~~~----------~d~~i~i~d 316 (425)
T 1r5m_A 263 LSASDD----------GTLRIWHGGNGNSQNCFYG-HSQSIVSAS---WVGDD--KVISCS----------MDGSVRLWS 316 (425)
T ss_dssp EEEETT----------SCEEEECSSSBSCSEEECC-CSSCEEEEE---EETTT--EEEEEE----------TTSEEEEEE
T ss_pred EEEcCC----------CEEEEEECCCCccceEecC-CCccEEEEE---ECCCC--EEEEEe----------CCCcEEEEE
Confidence 766644 3689999877766555532 334455554 33333 777666 348999999
Q ss_pred EeCCeEEEEEEEeecCceeEeccc-cCe-EEEEE-CCEEEEEEee
Q 004094 494 VEDGKLQLIAEKETKGAVYSLNAF-NGK-LLAAI-NQKIQLYKWM 535 (774)
Q Consensus 494 i~~~kl~~~~~~~~~g~v~~i~~~-~~~-lv~~~-g~~l~v~~~~ 535 (774)
+..++..... ....++|++++-- ++. |+++. ++.|++|++.
T Consensus 317 ~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 317 LKQNTLLALS-IVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp TTTTEEEEEE-ECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred CCCCcEeEec-ccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 8766543322 2347788888755 344 44444 3689998864
No 24
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.33 E-value=0.0011 Score=72.32 Aligned_cols=305 Identities=11% Similarity=0.090 Sum_probs=162.9
Q ss_pred eeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEE
Q 004094 217 EISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLL 296 (774)
Q Consensus 217 ~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~ 296 (774)
.++|+++. ...++.|.. ||.|.+|++.+.+.+....-. .....++.+ . ...|+.|..||.+..|.+
T Consensus 121 v~~~~~~~--------g~~l~sg~~-dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~---~-~~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 121 VITCLQFC--------GNRIVSGSD-DNTLKVWSAVTGKCLRTLVGH-TGGVWSSQM---R-DNIIISGSTDRTLKVWNA 186 (445)
T ss_dssp CEEEEEEE--------TTEEEEEET-TSCEEEEETTTCCEEEECCCC-SSCEEEEEE---E-TTEEEEEETTSCEEEEET
T ss_pred cEEEEEEc--------CCEEEEEEC-CCcEEEEECCCCcEEEEEcCC-CCCEEEEEe---c-CCEEEEEeCCCeEEEEEC
Confidence 35777763 467888888 999999999887665432111 111223322 2 357899999999999876
Q ss_pred ecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCe-EEEecC-Cc-EEEeeecccCceeeecccCCCCCCcEEE
Q 004094 297 NMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPT-VIYSSN-KK-LLYSNVNLKEVSHMCPFNSAAFPDSLAI 373 (774)
Q Consensus 297 ~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~-~l~~~~-~~-~~~~~~~~~~i~~~~~f~~~~~~~~l~~ 373 (774)
.. ++. .........++.-..+. + +.++..+..-. .++... ++ +.........+.+++. + ++.++.
T Consensus 187 ~~--~~~--~~~~~~h~~~v~~~~~~--~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-~----~~~l~~ 254 (445)
T 2ovr_B 187 ET--GEC--IHTLYGHTSTVRCMHLH--E-KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-D----GRRVVS 254 (445)
T ss_dssp TT--TEE--EEEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-C----SSCEEE
T ss_pred Cc--CcE--EEEECCCCCcEEEEEec--C-CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-C----CCEEEE
Confidence 53 221 11112223344333332 2 33444443333 334322 33 2222222234444432 1 234444
Q ss_pred Ee-CCeEEEEEEcCCCCeEEEEEeCC-CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCC
Q 004094 374 AK-EGELTIGTIDDIQKLHIRSIPLG-EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF 451 (774)
Q Consensus 374 ~~-~~~l~i~~l~~~~~~~~~~i~l~-~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~ 451 (774)
.. ++.+++..+.... ..+.+.-. ..+..+.+ +.+.+++++.+ ..++++|..+.+.+..+.-. .
T Consensus 255 ~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~--~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~-~ 319 (445)
T 2ovr_B 255 GAYDFMVKVWDPETET--CLHTLQGHTNRVYSLQF--DGIHVVSGSLD----------TSIRVWDVETGNCIHTLTGH-Q 319 (445)
T ss_dssp EETTSCEEEEEGGGTE--EEEEECCCSSCEEEEEE--CSSEEEEEETT----------SCEEEEETTTCCEEEEECCC-C
T ss_pred EcCCCEEEEEECCCCc--EeEEecCCCCceEEEEE--CCCEEEEEeCC----------CeEEEEECCCCCEEEEEcCC-c
Confidence 43 6778888776532 33444322 33455665 44555555543 36999999888887766532 2
Q ss_pred ceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE--eecCceeEeccccCeEEEEE-CCE
Q 004094 452 EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK--ETKGAVYSLNAFNGKLLAAI-NQK 528 (774)
Q Consensus 452 E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~--~~~g~v~~i~~~~~~lv~~~-g~~ 528 (774)
..+.++. +. ..++++|+ ..|.|.+|++..++....... ...++|++++.-+++|+++. .+.
T Consensus 320 ~~v~~~~---~~---~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~ 383 (445)
T 2ovr_B 320 SLTSGME---LK---DNILVSGN----------ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT 383 (445)
T ss_dssp SCEEEEE---EE---TTEEEEEE----------TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSE
T ss_pred ccEEEEE---Ee---CCEEEEEe----------CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCe
Confidence 3344433 22 34777776 348999999876553322211 25788999986555565554 468
Q ss_pred EEEEEeeecCCCchhhhhhc----ccccceEEEEEEEe--CCEEEEEecccc----EEEEEEEcc
Q 004094 529 IQLYKWMLRDDGTRELQSEC----GHHGHILALYVQTR--GDFIVVGDLMKS----ISLLIYKHE 583 (774)
Q Consensus 529 l~v~~~~~~~~~~~~l~~~~----~~~~~~~~~~l~~~--~~~I~vgD~~~S----v~~~~~~~~ 583 (774)
|++|++. .+ ++.... .......+.++... +.++++|+.-.. +.++.|+.+
T Consensus 384 v~iwd~~---~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 384 VKLWDLK---TG--EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEETT---TC--CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEECC---CC--ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 9998753 22 121111 00111234444443 446667766655 666666543
No 25
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=98.32 E-value=0.0013 Score=68.32 Aligned_cols=273 Identities=12% Similarity=0.074 Sum_probs=149.5
Q ss_pred CcEEEEEEC--CCEEEEEEcCCeEEEEEEcCc----eEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEE
Q 004094 175 YSVNVATAN--ASQVLLATGGGHLVYLEIGDG----ILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRI 248 (774)
Q Consensus 175 ~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~----~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i 248 (774)
..|.+.+.+ +..++.+ +++.+..+.+..+ .+...........|.++++.+ ....+++|.. ++.+.+
T Consensus 52 ~~v~~~~~~~~~~~l~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~-d~~i~~ 123 (337)
T 1gxr_A 52 EVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP------DGCTLIVGGE-ASTLSI 123 (337)
T ss_dssp SCCCEEEECSSSSEEEEE-CBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT------TSSEEEEEES-SSEEEE
T ss_pred CceEEEEEecCCcEEEEc-CCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC------CCCEEEEEcC-CCcEEE
Confidence 456666655 3344444 4778877777652 222333234667899999965 2567888877 999999
Q ss_pred EECCCCCeeEEecCCC-ccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcc
Q 004094 249 FSLPDLNLITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTT 327 (774)
Q Consensus 249 ~~l~~~~~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~ 327 (774)
|++.+.+......+.. .....++.+.+ +..+|++|..||.+..|.+.. +.. .+.......++.-..+.. +.+
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~~~d~~~--~~~--~~~~~~~~~~i~~~~~~~-~~~ 196 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSSAPACYALAISP--DSKVCFSCCSDGNIAVWDLHN--QTL--VRQFQGHTDGASCIDISN-DGT 196 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTT--TEE--EEEECCCSSCEEEEEECT-TSS
T ss_pred EECCCCCcceeeecccCCCceEEEEECC--CCCEEEEEeCCCcEEEEeCCC--Cce--eeeeecccCceEEEEECC-CCC
Confidence 9998755322212211 11223443332 456789999999999987653 221 111111223332222221 233
Q ss_pred eEEEecCCCe-EEEecC-CcE-EEeeecccCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCCCCeEEEEEeCCCcccE
Q 004094 328 HVFAASDRPT-VIYSSN-KKL-LYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLGEHPRR 403 (774)
Q Consensus 328 ~v~~~~~~p~-~l~~~~-~~~-~~~~~~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~tp~~ 403 (774)
.+++.+..-. .++..+ ++. ...+ ....+.+++ |+. ..+.++... ++.+.+..+...... +...-...+..
T Consensus 197 ~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~-~s~--~~~~l~~~~~~~~i~~~~~~~~~~~--~~~~~~~~v~~ 270 (337)
T 1gxr_A 197 KLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLG-YCP--TGEWLAVGMESSNVEVLHVNKPDKY--QLHLHESCVLS 270 (337)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEE-ECT--TSSEEEEEETTSCEEEEETTSSCEE--EECCCSSCEEE
T ss_pred EEEEEecCCcEEEEECCCCceEeeec-CCCceEEEE-ECC--CCCEEEEEcCCCcEEEEECCCCCeE--EEcCCccceeE
Confidence 4444444333 344333 322 1111 112333322 221 112344443 678888888765322 22233456788
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCC
Q 004094 404 ICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENE 483 (774)
Q Consensus 404 i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~ 483 (774)
+.++|+.+.++.++.+ ..++++|..+.+.+... .....+.++. +.. ..+++++|+
T Consensus 271 ~~~~~~~~~l~~~~~d----------g~i~~~~~~~~~~~~~~--~~~~~v~~~~---~s~-~~~~l~~~~--------- 325 (337)
T 1gxr_A 271 LKFAYCGKWFVSTGKD----------NLLNAWRTPYGASIFQS--KESSSVLSCD---ISV-DDKYIVTGS--------- 325 (337)
T ss_dssp EEECTTSSEEEEEETT----------SEEEEEETTTCCEEEEE--ECSSCEEEEE---ECT-TSCEEEEEE---------
T ss_pred EEECCCCCEEEEecCC----------CcEEEEECCCCeEEEEe--cCCCcEEEEE---ECC-CCCEEEEec---------
Confidence 9999998877766543 37999999888776433 3445555554 333 346777776
Q ss_pred CcceEEEEEEE
Q 004094 484 PTKGRILVFIV 494 (774)
Q Consensus 484 ~~~Grl~v~~i 494 (774)
..|.+.+|++
T Consensus 326 -~dg~i~iw~~ 335 (337)
T 1gxr_A 326 -GDKKATVYEV 335 (337)
T ss_dssp -TTSCEEEEEE
T ss_pred -CCCeEEEEEE
Confidence 2488999986
No 26
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=98.32 E-value=0.0014 Score=70.12 Aligned_cols=285 Identities=13% Similarity=0.131 Sum_probs=157.7
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCC------eeEEecCCCccCceeEEeeee--cCe---eE
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLN------LITKEHLGGEIIPRSVLLCAF--EGI---SY 281 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~------~~~~~~l~~~~~p~si~~~~~--~~~---~~ 281 (774)
.....|+|+++.+ .+++.|.. +|.|.+|++.+.+ .+.... .......++.+.+- .+. .+
T Consensus 14 ~h~~~i~~~~~~~--------~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 14 AHDADIFSVSACN--------SFTVSCSG-DGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp CSSSCEEEEEECS--------SEEEEEET-TSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhcCeEEEEecC--------CeEEEEcC-CCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccE
Confidence 3567899999953 56777777 9999999998755 332211 11122344544432 013 67
Q ss_pred EEEEeCCCcEEEEEEecCCCcccc-ceeeecC-----CCCeEEEEEEe---CCcce-EEEecC-CCeEEEecCC------
Q 004094 282 LLCALGDGHLLNFLLNMKTGELTD-RKKVSLG-----TQPITLRTFSS---KNTTH-VFAASD-RPTVIYSSNK------ 344 (774)
Q Consensus 282 L~vgl~~G~l~~y~~~~~~~~l~~-~~~~~lG-----~~pv~l~~~~~---~~~~~-v~~~~~-~p~~l~~~~~------ 344 (774)
|+.|..||.+..|.+......... .+..... ..++.-..+.. .+... +++.+. ....++..+.
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 888999999999998753210000 1111111 23443222320 12233 333333 3333332111
Q ss_pred --cEEEee---e---------cccCceeeecccCCCCCCcEEEE--eCCeEEEEEEcCCCCeEEEEEeC-------CCcc
Q 004094 345 --KLLYSN---V---------NLKEVSHMCPFNSAAFPDSLAIA--KEGELTIGTIDDIQKLHIRSIPL-------GEHP 401 (774)
Q Consensus 345 --~~~~~~---~---------~~~~i~~~~~f~~~~~~~~l~~~--~~~~l~i~~l~~~~~~~~~~i~l-------~~tp 401 (774)
.+.+.+ + ....+.+++ |+ +++++++ .++.+.+..+... -..+.+.. ...+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~----~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~h~~~~~~i 236 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVD-IS----ERGLIATGFNNGTVQISELSTL--RPLYNFESQHSMINNSNSI 236 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEE-EC----TTSEEEEECTTSEEEEEETTTT--EEEEEEECCC---CCCCCE
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEE-EC----CCceEEEEeCCCcEEEEECCCC--ceeEEEeccccccccCCcc
Confidence 111110 0 111222222 21 2333332 2577888887653 34556665 6678
Q ss_pred cEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC------------CCceEEEEEEEEEcCCCceE
Q 004094 402 RRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD------------TFEYGCSILSCSFSDDSNVY 469 (774)
Q Consensus 402 ~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~------------~~E~~~si~~~~~~~~~~~~ 469 (774)
..++++|..+.+++++.+. ....|+++|..+.+.+..+.-+ ....+.++. +.. ...+
T Consensus 237 ~~i~~~~~~~~l~~~~~d~-------~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~-~~~~ 305 (397)
T 1sq9_A 237 RSVKFSPQGSLLAIAHDSN-------SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS---FND-SGET 305 (397)
T ss_dssp EEEEECSSTTEEEEEEEET-------TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE---ECS-SSSE
T ss_pred ceEEECCCCCEEEEEecCC-------CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE---ECC-CCCE
Confidence 8999999988887776541 1258999999888887766542 344555554 333 3457
Q ss_pred EEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE-----ee---------------cCceeEeccccC----------
Q 004094 470 YCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK-----ET---------------KGAVYSLNAFNG---------- 519 (774)
Q Consensus 470 i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~-----~~---------------~g~v~~i~~~~~---------- 519 (774)
++.|+ ..|.|++|++..++....... .. .++|++++-..+
T Consensus 306 l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 375 (397)
T 1sq9_A 306 LCSAG----------WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADL 375 (397)
T ss_dssp EEEEE----------TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTT
T ss_pred EEEEe----------CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccc
Confidence 77776 348999999977654333321 23 788999886643
Q ss_pred -e-EEEEE-CCEEEEEEee
Q 004094 520 -K-LLAAI-NQKIQLYKWM 535 (774)
Q Consensus 520 -~-lv~~~-g~~l~v~~~~ 535 (774)
. |+.+. .+.|++|+++
T Consensus 376 ~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 376 NESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp SCEEEEEETTTEEEEEEEE
T ss_pred cceEEEecCCCcEEEEEcC
Confidence 3 44333 4788888764
No 27
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=98.32 E-value=0.00066 Score=70.72 Aligned_cols=280 Identities=13% Similarity=0.107 Sum_probs=146.0
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCee---EEecCCC-ccCceeEEeeeecCeeEEEEEeCC
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLI---TKEHLGG-EIIPRSVLLCAFEGISYLLCALGD 288 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~---~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~ 288 (774)
-....|+|+++.|. ..++++-|.. |++|+||++...+.. ....+.. .....++.+. .+..+|+.|..|
T Consensus 36 GH~~~V~~v~~sp~-----~~~~l~S~s~-D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s--~dg~~l~s~~~d 107 (340)
T 4aow_A 36 GHNGWVTQIATTPQ-----FPDMILSASR-DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS--SDGQFALSGSWD 107 (340)
T ss_dssp CCSSCEEEEEECTT-----CTTEEEEEET-TSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEEC--TTSSEEEEEETT
T ss_pred CccCCEEEEEEeCC-----CCCEEEEEcC-CCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEEC--CCCCEEEEEccc
Confidence 35678999999752 1456766766 999999998754321 1122221 1123344333 245678999999
Q ss_pred CcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEec-CCCeEEEecCCcEEEee-ec--ccCceeeecccC
Q 004094 289 GHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYSSNKKLLYSN-VN--LKEVSHMCPFNS 364 (774)
Q Consensus 289 G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~l~~~~~~~~~~~-~~--~~~i~~~~~f~~ 364 (774)
|.+..+..... .. .........++....+. .....++..+ +....++...+...... .. ...+.. ..|..
T Consensus 108 ~~i~~~~~~~~--~~--~~~~~~~~~~~~~~~~~-~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~-~~~~~ 181 (340)
T 4aow_A 108 GTLRLWDLTTG--TT--TRRFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSC-VRFSP 181 (340)
T ss_dssp SEEEEEETTTT--EE--EEEEECCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEE-EEECS
T ss_pred ccceEEeeccc--ce--eeeecCCCCceeEEEEe-ecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccc-eEEcc
Confidence 99888765432 11 11111112222222222 1222333333 34444443332221111 11 112222 22322
Q ss_pred CCCCCcEEEE-eCCeEEEEEEcCCCCeEEEEEe-CCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceE
Q 004094 365 AAFPDSLAIA-KEGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEF 442 (774)
Q Consensus 365 ~~~~~~l~~~-~~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~ 442 (774)
......++.. .++.+++..+.... ..+.+. -...+..++++|+.+.++.++.+ ..++++|..+++.
T Consensus 182 ~~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D----------g~i~iwd~~~~~~ 249 (340)
T 4aow_A 182 NSSNPIIVSCGWDKLVKVWNLANCK--LKTNHIGHTGYLNTVTVSPDGSLCASGGKD----------GQAMLWDLNEGKH 249 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETT----------CEEEEEETTTTEE
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCc--eeeEecCCCCcEEEEEECCCCCEEEEEeCC----------CeEEEEEeccCce
Confidence 1111122222 35678777766532 222222 23457789999998887777654 3799999999888
Q ss_pred EEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEE--------EEEEeecCceeEe
Q 004094 443 ISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQL--------IAEKETKGAVYSL 514 (774)
Q Consensus 443 i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~--------~~~~~~~g~v~~i 514 (774)
+..+.. .+.+.++. +.. .. ++++|.. .|.|++|++..+.+.. .......++|+++
T Consensus 250 ~~~~~~--~~~v~~~~---~~~-~~-~~~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 312 (340)
T 4aow_A 250 LYTLDG--GDIINALC---FSP-NR-YWLCAAT----------GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 312 (340)
T ss_dssp EEEEEC--SSCEEEEE---ECS-SS-SEEEEEE----------TTEEEEEETTTTEEEEEECCC-------CCCCCEEEE
T ss_pred eeeecC--CceEEeee---cCC-CC-ceeeccC----------CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEE
Confidence 876654 44555543 332 23 3444432 2688999876543221 1123457789988
Q ss_pred ccc-cCe-EEEEE-CCEEEEEEee
Q 004094 515 NAF-NGK-LLAAI-NQKIQLYKWM 535 (774)
Q Consensus 515 ~~~-~~~-lv~~~-g~~l~v~~~~ 535 (774)
+-- +|. |+.+. .+.|++|++.
T Consensus 313 ~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 313 AWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EECTTSSEEEEEETTSCEEEEEEE
T ss_pred EECCCCCEEEEEeCCCEEEEEeCC
Confidence 754 444 44433 3689998864
No 28
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.31 E-value=0.0033 Score=68.86 Aligned_cols=181 Identities=13% Similarity=0.126 Sum_probs=106.1
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcc
Q 004094 407 QEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTK 486 (774)
Q Consensus 407 ~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~ 486 (774)
.++.+.+++++.+ ..|+++|..+.+.+..+.- ....+.++. +.. ..+++++|+ ..
T Consensus 277 ~~~~~~l~~~~~d----------~~i~vwd~~~~~~~~~~~~-~~~~v~~~~---~~~-~~~~l~sg~----------~d 331 (464)
T 3v7d_B 277 SGHGNIVVSGSYD----------NTLIVWDVAQMKCLYILSG-HTDRIYSTI---YDH-ERKRCISAS----------MD 331 (464)
T ss_dssp EEETTEEEEEETT----------SCEEEEETTTTEEEEEECC-CSSCEEEEE---EET-TTTEEEEEE----------TT
T ss_pred cCCCCEEEEEeCC----------CeEEEEECCCCcEEEEecC-CCCCEEEEE---EcC-CCCEEEEEe----------CC
Confidence 3445666666544 3699999988888776543 234455554 332 345777776 34
Q ss_pred eEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEE-CCEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCE
Q 004094 487 GRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAI-NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDF 565 (774)
Q Consensus 487 Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~-g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 565 (774)
|.|++|++..++..... ....++|++++.-+++|+++. .+.|++|+.. .+.... ..........+.+...+++
T Consensus 332 g~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~---~~~~~~--~~~~~~~~~~~~~~~~~~~ 405 (464)
T 3v7d_B 332 TTIRIWDLENGELMYTL-QGHTALVGLLRLSDKFLVSAAADGSIRGWDAN---DYSRKF--SYHHTNLSAITTFYVSDNI 405 (464)
T ss_dssp SCEEEEETTTTEEEEEE-CCCSSCEEEEEECSSEEEEEETTSEEEEEETT---TCCEEE--EEECTTCCCEEEEEECSSE
T ss_pred CcEEEEECCCCcEEEEE-eCCCCcEEEEEEcCCEEEEEeCCCcEEEEECC---CCceee--eecCCCCccEEEEEeCCCE
Confidence 88999998766543222 246788999886555666554 4688998753 121111 1111222334556677888
Q ss_pred EEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeE-EEEccCCcEEEE
Q 004094 566 IVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIY-LGAENNFNLFTV 622 (774)
Q Consensus 566 I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~-l~~D~~gnl~~l 622 (774)
+++|. -..+. -|+.+.+++...-.-.....+.++.+ +++.+ ++++.+|..++.
T Consensus 406 l~~~~-dg~i~--iwd~~~g~~~~~~~~~~~~~v~~v~~-~~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 406 LVSGS-ENQFN--IYNLRSGKLVHANILKDADQIWSVNF-KGKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEEEE-TTEEE--EEETTTCCEEESCTTTTCSEEEEEEE-ETTEEEEEEEETTEEEEE
T ss_pred EEEec-CCeEE--EEECCCCcEEehhhccCCCcEEEEEe-cCCEEEEEEEeCCeEEEE
Confidence 88888 45554 46766666543212233556777776 44554 455666655443
No 29
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=98.31 E-value=0.00082 Score=69.01 Aligned_cols=274 Identities=15% Similarity=0.127 Sum_probs=154.8
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEE
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLL 292 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~ 292 (774)
.....|+|+++ + ....++.|.. +|.|.+|++.+.+........ .....++.+.+ +..+|++|..||.+.
T Consensus 16 ~h~~~v~~~~~-~------~~~~l~s~~~-dg~v~vw~~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 16 GHDQDVRDVVA-V------DDSKVASVSR-DGTVRLWSKDDQWLGTVVYTG-QGFLNSVCYDS--EKELLLFGGKDTMIN 84 (313)
T ss_dssp CCSSCEEEEEE-E------ETTEEEEEET-TSEEEEEEESSSEEEEEEEEC-SSCEEEEEEET--TTTEEEEEETTSCEE
T ss_pred CCCCCcEEEEe-c------CCCEEEEEEc-CCcEEEEECCCCEEEEEeecC-CccEEEEEECC--CCCEEEEecCCCeEE
Confidence 34678999988 3 1466787777 999999999775543321111 12334454443 456899999999999
Q ss_pred EEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCeEEEecCCc-EEEeeecccCceeeecccCCCCCCcE
Q 004094 293 NFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKK-LLYSNVNLKEVSHMCPFNSAAFPDSL 371 (774)
Q Consensus 293 ~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~~~~-~~~~~~~~~~i~~~~~f~~~~~~~~l 371 (774)
.|.+...... .......-...++.-..+. .+.+++.+....+...+.+. ..........+.+++-+.. ..+.+
T Consensus 85 ~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~--~~~~l 158 (313)
T 3odt_A 85 GVPLFATSGE-DPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSF--SENKF 158 (313)
T ss_dssp EEETTCCTTS-CC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEET--TTTEE
T ss_pred EEEeeecCCC-CcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccC--CCCEE
Confidence 9987543211 1111111122333222232 23444444444443333333 2222222344444443321 12334
Q ss_pred EEEe-CCeEEEEEEcCCCCeEEEEEe--CCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEEC
Q 004094 372 AIAK-EGELTIGTIDDIQKLHIRSIP--LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPL 448 (774)
Q Consensus 372 ~~~~-~~~l~i~~l~~~~~~~~~~i~--l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~ 448 (774)
+... ++.+.+.... -..+.+. ....+..+++++..+ +++++.+ ..++++|..+.+.+..+.-
T Consensus 159 ~~~~~d~~i~i~d~~----~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d----------g~i~i~d~~~~~~~~~~~~ 223 (313)
T 3odt_A 159 LTASADKTIKLWQND----KVIKTFSGIHNDVVRHLAVVDDGH-FISCSND----------GLIKLVDMHTGDVLRTYEG 223 (313)
T ss_dssp EEEETTSCEEEEETT----EEEEEECSSCSSCEEEEEEEETTE-EEEEETT----------SEEEEEETTTCCEEEEEEC
T ss_pred EEEECCCCEEEEecC----ceEEEEeccCcccEEEEEEcCCCe-EEEccCC----------CeEEEEECCchhhhhhhhc
Confidence 4433 6778887622 2333333 455678889998877 5544433 3799999998888877764
Q ss_pred CCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEE-EEC
Q 004094 449 DTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLA-AIN 526 (774)
Q Consensus 449 ~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~-~~g 526 (774)
. ...+.++. +..++ .++.|+ ..|.|++|++..+++.... ....++|++++-. ++.+++ +..
T Consensus 224 ~-~~~i~~~~---~~~~~--~l~~~~----------~dg~v~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~d 286 (313)
T 3odt_A 224 H-ESFVYCIK---LLPNG--DIVSCG----------EDRTVRIWSKENGSLKQVI-TLPAISIWSVDCMSNGDIIVGSSD 286 (313)
T ss_dssp C-SSCEEEEE---ECTTS--CEEEEE----------TTSEEEEECTTTCCEEEEE-ECSSSCEEEEEECTTSCEEEEETT
T ss_pred C-CceEEEEE---EecCC--CEEEEe----------cCCEEEEEECCCCceeEEE-eccCceEEEEEEccCCCEEEEeCC
Confidence 3 33455554 44433 366665 3489999998876544333 2346789988865 455554 445
Q ss_pred CEEEEEEee
Q 004094 527 QKIQLYKWM 535 (774)
Q Consensus 527 ~~l~v~~~~ 535 (774)
+.|++|++.
T Consensus 287 g~i~iw~~~ 295 (313)
T 3odt_A 287 NLVRIFSQE 295 (313)
T ss_dssp SCEEEEESC
T ss_pred CcEEEEeCC
Confidence 789998864
No 30
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=98.29 E-value=0.0057 Score=64.12 Aligned_cols=289 Identities=11% Similarity=0.101 Sum_probs=162.3
Q ss_pred CcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECC
Q 004094 175 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 252 (774)
Q Consensus 175 ~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~ 252 (774)
..|.+.+.+ +..++.+..++.+..+.+.+++.... -......|+++++.+ ...+++.+.. ++.|.+|++.
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~------~~~~l~s~~~-dg~i~iwd~~ 104 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT-LDGHTGTIWSIDVDC------FTKYCVTGSA-DYSIKLWDVS 104 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE-ECCCSSCEEEEEECT------TSSEEEEEET-TTEEEEEETT
T ss_pred ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh-hhhcCCcEEEEEEcC------CCCEEEEEeC-CCeEEEEECC
Confidence 357776654 44666666677777777665443322 123567799999965 2467777777 9999999998
Q ss_pred CCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCC-----CcEEEEEEecCCCcccc-------ceeee--cCCCCeEE
Q 004094 253 DLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGD-----GHLLNFLLNMKTGELTD-------RKKVS--LGTQPITL 318 (774)
Q Consensus 253 ~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~-----G~l~~y~~~~~~~~l~~-------~~~~~--lG~~pv~l 318 (774)
+.+.+.....+ ..+.++.+.+ +..+++++..+ |.+..|.+......... ..... -+..++.-
T Consensus 105 ~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 105 NGQCVATWKSP--VPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp TCCEEEEEECS--SCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred CCcEEEEeecC--CCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 87765543322 2344554432 45678889888 99999998754321100 00000 11113322
Q ss_pred EEEEeCCcceEEEecCCC-eEEEecCC--cE-EEeeecccCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCCCCeEEE
Q 004094 319 RTFSSKNTTHVFAASDRP-TVIYSSNK--KL-LYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIR 393 (774)
Q Consensus 319 ~~~~~~~~~~v~~~~~~p-~~l~~~~~--~~-~~~~~~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~ 393 (774)
..+.. +...+++.+..- ..++..+. .. .........+.+++ |+. ..+.++... ++.+.+..+.... ..+
T Consensus 181 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~-~~~--~~~~l~~~~~d~~i~v~d~~~~~--~~~ 254 (369)
T 3zwl_B 181 AGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQ-FSP--DLTYFITSSRDTNSFLVDVSTLQ--VLK 254 (369)
T ss_dssp EEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEE-ECT--TSSEEEEEETTSEEEEEETTTCC--EEE
T ss_pred EEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEE-ECC--CCCEEEEecCCceEEEEECCCCc--eee
Confidence 22221 222333333333 33443332 21 11121223344433 221 122344443 6788888876543 445
Q ss_pred EEeCCCcccEEEEecCCCEEEEEEeccC----CCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceE
Q 004094 394 SIPLGEHPRRICHQEQSRTFAICSLKNQ----SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVY 469 (774)
Q Consensus 394 ~i~l~~tp~~i~y~~~~~~~~v~~~~~~----~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~ 469 (774)
.+.....+..++++|..+.+++++.... ..........++++|..+.+.+..+.-. ...+.++. +.. ..++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~---~s~-~~~~ 329 (369)
T 3zwl_B 255 KYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH-FGPLNTVA---ISP-QGTS 329 (369)
T ss_dssp EEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC-SSCEEEEE---ECT-TSSE
T ss_pred eecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc-cCcEEEEE---ECC-CCCE
Confidence 5566777889999999998888776531 0111122347999999888887766532 34455554 443 3457
Q ss_pred EEEEeeeeCCCCCCCcceEEEEEEEeC
Q 004094 470 YCVGTAYVLPEENEPTKGRILVFIVED 496 (774)
Q Consensus 470 i~VGT~~~~~~e~~~~~Grl~v~~i~~ 496 (774)
++.|+ ..|.|.+|++.+
T Consensus 330 l~s~~----------~dg~v~iw~~~~ 346 (369)
T 3zwl_B 330 YASGG----------EDGFIRLHHFEK 346 (369)
T ss_dssp EEEEE----------TTSEEEEEEECH
T ss_pred EEEEc----------CCCeEEEEECcc
Confidence 77776 348999999873
No 31
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=98.28 E-value=0.0049 Score=66.26 Aligned_cols=261 Identities=8% Similarity=0.043 Sum_probs=146.8
Q ss_pred cCcEEEEecCCCceeeeEeCCCCCcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCC
Q 004094 152 SGSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGEN 229 (774)
Q Consensus 152 ~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~ 229 (774)
...|++.+.++++....+..+....|.+.+.+ +..++++..++.+..+.+..++....- ......|.|+++.
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~----- 185 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM-AGHQARVGCLSWN----- 185 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEEE-----
T ss_pred CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe-cCCCCceEEEEEC-----
Confidence 55688888877666666655455678888865 457777777888888887664432221 2456778999883
Q ss_pred CCCcceEEEEEecCCEEEEEECCC-CCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCcccccee
Q 004094 230 PSYSQIAAVGMWTDISVRIFSLPD-LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKK 308 (774)
Q Consensus 230 ~~~~~~~~vg~~~~~~i~i~~l~~-~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~ 308 (774)
...++.|.. +|.+.+|++.. ...+....- ......++.+.+ +..+|++|..||.+..|.+.. +... ..
T Consensus 186 ---~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~--~~~~--~~ 254 (401)
T 4aez_A 186 ---RHVLSSGSR-SGAIHHHDVRIANHQIGTLQG-HSSEVCGLAWRS--DGLQLASGGNDNVVQIWDARS--SIPK--FT 254 (401)
T ss_dssp ---TTEEEEEET-TSEEEEEETTSSSCEEEEEEC-CSSCEEEEEECT--TSSEEEEEETTSCEEEEETTC--SSEE--EE
T ss_pred ---CCEEEEEcC-CCCEEEEecccCcceeeEEcC-CCCCeeEEEEcC--CCCEEEEEeCCCeEEEccCCC--CCcc--EE
Confidence 357777777 99999999974 333222111 111233444332 456899999999999987654 2111 11
Q ss_pred eecCCCCeEEEEEEeCCcceEEEec----CCCeEEEecC-Cc-EEEeeecccCceeeecccCCCCCCcEEEEe---CCeE
Q 004094 309 VSLGTQPITLRTFSSKNTTHVFAAS----DRPTVIYSSN-KK-LLYSNVNLKEVSHMCPFNSAAFPDSLAIAK---EGEL 379 (774)
Q Consensus 309 ~~lG~~pv~l~~~~~~~~~~v~~~~----~~p~~l~~~~-~~-~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~---~~~l 379 (774)
..-...++.-..+.. ....++++| +....++..+ ++ +.... ....+.+++ |+. ....++.+. ++.+
T Consensus 255 ~~~~~~~v~~~~~~p-~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~-~s~--~~~~l~~~~g~~dg~i 329 (401)
T 4aez_A 255 KTNHNAAVKAVAWCP-WQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLI-WSP--HSKEIMSTHGFPDNNL 329 (401)
T ss_dssp ECCCSSCCCEEEECT-TSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEE-ECS--SSSEEEEEECTTTCEE
T ss_pred ecCCcceEEEEEECC-CCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEE-ECC--CCCeEEEEeecCCCcE
Confidence 111233333223322 233455543 3333344332 32 22111 112333322 221 112344443 7899
Q ss_pred EEEEEcCCCCeEEEEEeC-CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEE
Q 004094 380 TIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIS 444 (774)
Q Consensus 380 ~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~ 444 (774)
.+..+..........++- ...+..++++|+.+.++.++.+ ..|+++|..+.+.+.
T Consensus 330 ~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~d----------g~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 330 SIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASD----------ENLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTT----------SEEEEEECCC-----
T ss_pred EEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCC----------CcEEEEECCCCcccc
Confidence 999988754333333332 3467889999988877766644 378999887766553
No 32
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=98.28 E-value=0.0015 Score=68.74 Aligned_cols=271 Identities=11% Similarity=0.071 Sum_probs=152.4
Q ss_pred CcEEEEEECC-----CEEEEEEcCCeEEEEEEcC-ceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEE
Q 004094 175 YSVNVATANA-----SQVLLATGGGHLVYLEIGD-GILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRI 248 (774)
Q Consensus 175 ~~I~~a~~~~-----~~lvv~~~~~~~~~~~~~~-~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i 248 (774)
..|.+.+.++ ..++.+..++.+..+.+.. +......-......|.++++.+ ...+++.|.. +|.+.+
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~------~~~~l~s~~~-dg~v~i 112 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD------DGSKVFTASC-DKTAKM 112 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT------TSSEEEEEET-TSEEEE
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc------CCCEEEEEcC-CCcEEE
Confidence 4688887664 3566666678888888875 4332222234567899999965 2567787777 999999
Q ss_pred EECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcce
Q 004094 249 FSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTH 328 (774)
Q Consensus 249 ~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~ 328 (774)
|++.+.+.+...... ....++.+....+..+|+.|..||.+..|.+.. +.. ............+.. . ....
T Consensus 113 wd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~--~~~~~~~~~~~~~~~-~--~~~~ 183 (368)
T 3mmy_A 113 WDLSSNQAIQIAQHD--APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS--SNP--MMVLQLPERCYCADV-I--YPMA 183 (368)
T ss_dssp EETTTTEEEEEEECS--SCEEEEEEEECSSCEEEEEEETTSEEEEECSSC--SSC--SEEEECSSCEEEEEE-E--TTEE
T ss_pred EEcCCCCceeecccc--CceEEEEEEeCCCCCEEEEccCCCcEEEEECCC--CcE--EEEEecCCCceEEEe-c--CCee
Confidence 999876654432221 234455543334557799999999999987654 221 111122221112211 1 2233
Q ss_pred EEEecCCCeEEEecCC-cEEEeeecc---cCceeeecccCCC-CCCcEEEE-eCCeEEEEEEcCCCC-eEEEEEeCCC--
Q 004094 329 VFAASDRPTVIYSSNK-KLLYSNVNL---KEVSHMCPFNSAA-FPDSLAIA-KEGELTIGTIDDIQK-LHIRSIPLGE-- 399 (774)
Q Consensus 329 v~~~~~~p~~l~~~~~-~~~~~~~~~---~~i~~~~~f~~~~-~~~~l~~~-~~~~l~i~~l~~~~~-~~~~~i~l~~-- 399 (774)
+...++....++..+. ...+..+.. .....++.+.... .+++++.. .++.+.+..+..... .....+....
T Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 263 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263 (368)
T ss_dssp EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence 4444455555554332 111111111 1222222222221 22335544 478899998876532 2222232222
Q ss_pred -----------cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCce
Q 004094 400 -----------HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468 (774)
Q Consensus 400 -----------tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~ 468 (774)
.+..++++|+.+.++.++.+ ..|+++|..+++.+..+.- ....+.++. +.. ...
T Consensus 264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~-~~~~v~~~~---~s~-~g~ 328 (368)
T 3mmy_A 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSD----------GRFSFWDKDARTKLKTSEQ-LDQPISACC---FNH-NGN 328 (368)
T ss_dssp ----CCCEEECCEEEEEECTTTCCEEEEETT----------SCEEEEETTTTEEEEECCC-CSSCEEEEE---ECT-TSS
T ss_pred cccccccccccceEEEEEecCCCEEEEEccC----------CeEEEEECCCCcEEEEecC-CCCCceEEE---ECC-CCC
Confidence 47789999988877776654 3699999998888765542 234455553 443 356
Q ss_pred EEEEEeee
Q 004094 469 YYCVGTAY 476 (774)
Q Consensus 469 ~i~VGT~~ 476 (774)
++++|+..
T Consensus 329 ~l~~~s~d 336 (368)
T 3mmy_A 329 IFAYASSY 336 (368)
T ss_dssp CEEEEECC
T ss_pred eEEEEecc
Confidence 77777754
No 33
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=0.0043 Score=67.85 Aligned_cols=241 Identities=14% Similarity=0.096 Sum_probs=133.2
Q ss_pred eeEEEEeCCCCCCCCCcceE-EEEEecCCEEEEEECC--CCCeeEEe---cCCCccCceeEEeeeecCeeEEEEEeCCCc
Q 004094 217 EISCLDINPIGENPSYSQIA-AVGMWTDISVRIFSLP--DLNLITKE---HLGGEIIPRSVLLCAFEGISYLLCALGDGH 290 (774)
Q Consensus 217 ~is~l~~~~~~~~~~~~~~~-~vg~~~~~~i~i~~l~--~~~~~~~~---~l~~~~~p~si~~~~~~~~~~L~vgl~~G~ 290 (774)
.|+|+++.+. ..++ +.|.. ++.+.||++. +.+.+... ..+ ..+.++.+.+ +..+|++|..+|.
T Consensus 104 ~v~~~~~s~d------~~~l~~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~sp--~~~~l~~~~~~g~ 172 (450)
T 2vdu_B 104 YIRNLRLTSD------ESRLIACADS-DKSLLVFDVDKTSKNVLKLRKRFCFS--KRPNAISIAE--DDTTVIIADKFGD 172 (450)
T ss_dssp CEEEEEECTT------SSEEEEEEGG-GTEEEEEEECSSSSSCEEEEEEEECS--SCEEEEEECT--TSSEEEEEETTSE
T ss_pred ceEEEEEcCC------CCEEEEEECC-CCeEEEEECcCCCCceeeeeecccCC--CCceEEEEcC--CCCEEEEEeCCCc
Confidence 5889998652 4565 55555 9999999998 55443321 221 2334544432 4568999999999
Q ss_pred EEEEEEecCCCcccc--ceeeecCCCCeEEEEEEeC-CcceEEEecCCCeEEEecCCcEEEeeecccCceeeecccCCCC
Q 004094 291 LLNFLLNMKTGELTD--RKKVSLGTQPITLRTFSSK-NTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAF 367 (774)
Q Consensus 291 l~~y~~~~~~~~l~~--~~~~~lG~~pv~l~~~~~~-~~~~v~~~~~~p~~l~~~~~~~~~~~~~~~~i~~~~~f~~~~~ 367 (774)
+..|.+.. +.... .....-...++.-..+..+ +. ..+++...
T Consensus 173 v~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~sp~~~~--------~~~l~s~~------------------------- 217 (450)
T 2vdu_B 173 VYSIDINS--IPEEKFTQEPILGHVSMLTDVHLIKDSDG--------HQFIITSD------------------------- 217 (450)
T ss_dssp EEEEETTS--CCCSSCCCCCSEECSSCEEEEEEEECTTS--------CEEEEEEE-------------------------
T ss_pred EEEEecCC--cccccccceeeecccCceEEEEEcCCCCC--------CcEEEEEc-------------------------
Confidence 97776543 21110 0000000111111111100 00 11111111
Q ss_pred CCcEEEEeCCeEEEEEEcCCCCeEEEEEe--CCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEE
Q 004094 368 PDSLAIAKEGELTIGTIDDIQKLHIRSIP--LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 445 (774)
Q Consensus 368 ~~~l~~~~~~~l~i~~l~~~~~~~~~~i~--l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~ 445 (774)
.++.+++..+..... .+.+. -...+..++++ +.+.++.++.+ ..|+++|..+++.+..
T Consensus 218 -------~d~~i~vwd~~~~~~--~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d----------~~v~vwd~~~~~~~~~ 277 (450)
T 2vdu_B 218 -------RDEHIKISHYPQCFI--VDKWLFGHKHFVSSICCG-KDYLLLSAGGD----------DKIFAWDWKTGKNLST 277 (450)
T ss_dssp -------TTSCEEEEEESCTTC--EEEECCCCSSCEEEEEEC-STTEEEEEESS----------SEEEEEETTTCCEEEE
T ss_pred -------CCCcEEEEECCCCce--eeeeecCCCCceEEEEEC-CCCEEEEEeCC----------CeEEEEECCCCcEeee
Confidence 133444444433221 11111 12456778888 76766666543 3799999988888877
Q ss_pred EECC------------------------CCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEE--e-CCe
Q 004094 446 YPLD------------------------TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIV--E-DGK 498 (774)
Q Consensus 446 ~~~~------------------------~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i--~-~~k 498 (774)
+... ....+.++. +.. ...++++|+. ..|.|++|++ . .++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~---~~~-~~~~l~~~~~---------~d~~i~iw~~~~~~~~~ 344 (450)
T 2vdu_B 278 FDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII---KSK-NLPFVAFFVE---------ATKCIIILEMSEKQKGD 344 (450)
T ss_dssp EECHHHHGGGCCTTSBC----------CBCCCEEEEE---ECS-SSSEEEEEET---------TCSEEEEEEECSSSTTC
T ss_pred ecchhhhhhhhhhcccccccccccccccceEEEEEEE---EeC-CCCEEEEEEC---------CCCeEEEEEeccCCCCc
Confidence 7642 112233332 332 3567777762 2489999999 3 357
Q ss_pred EEEEEEEeecCceeEeccccCeEEEEECC---------EEEEEEeee
Q 004094 499 LQLIAEKETKGAVYSLNAFNGKLLAAINQ---------KIQLYKWML 536 (774)
Q Consensus 499 l~~~~~~~~~g~v~~i~~~~~~lv~~~g~---------~l~v~~~~~ 536 (774)
++.+......++|.+++-..+.++++.++ .|.+|.++.
T Consensus 345 l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 345 LALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred eeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 78777777779999998777777777654 267777753
No 34
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=98.21 E-value=0.003 Score=66.78 Aligned_cols=280 Identities=13% Similarity=0.133 Sum_probs=154.9
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEE
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLL 292 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~ 292 (774)
.....|.|+++.+ ....++.|.. |+.+.||+....+......... ....++.+.+ +..+|.+|..||.+.
T Consensus 62 gH~~~V~~~~~s~------d~~~l~s~s~-Dg~v~vWd~~~~~~~~~~~~~~-~~v~~~~~sp--~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 62 GHGNKVLCMDWCK------DKRRIVSSSQ-DGKVIVWDSFTTNKEHAVTMPC-TWVMACAYAP--SGCAIACGGLDNKCS 131 (354)
T ss_dssp CCSSCEEEEEECT------TSSEEEEEET-TSEEEEEETTTCCEEEEEECSS-SCCCEEEECT--TSSEEEEESTTSEEE
T ss_pred CCCCeEEEEEECC------CCCEEEEEeC-CCeEEEEECCCCCcceEEecCC-CCEEEEEECC--CCCEEEEeeCCCCEE
Confidence 3557799999965 2467777777 9999999987665544333321 1223333332 456789999999999
Q ss_pred EEEEecCCC--ccccceeeecCCCCeEEEEEEeCCcceEEEec-CCCeEEEecC-CcE-EEeeecccCceeeecccCCCC
Q 004094 293 NFLLNMKTG--ELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYSSN-KKL-LYSNVNLKEVSHMCPFNSAAF 367 (774)
Q Consensus 293 ~y~~~~~~~--~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~l~~~~-~~~-~~~~~~~~~i~~~~~f~~~~~ 367 (774)
.|.+..... .....+....-..++.-..+.. +...++..+ +....++.-+ ++. ....-....+.+++ |.....
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~-~~~~~~ 209 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLD-LAPSET 209 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE-ECCCSS
T ss_pred EEEEeccccccccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEE-EEeCCC
Confidence 998754321 1111122222233443333332 223344443 3333344322 332 11111122333322 211111
Q ss_pred CCcEEEEe-CCeEEEEEEcCCCCeEEEEEeC-CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEE
Q 004094 368 PDSLAIAK-EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 445 (774)
Q Consensus 368 ~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~ 445 (774)
.+.++... ++.+++..+.+.. ..+.+.. ...+..++++|..+.++.++.+. .++++|..+.+.+..
T Consensus 210 g~~l~sgs~Dg~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~----------~v~lwd~~~~~~~~~ 277 (354)
T 2pbi_B 210 GNTFVSGGCDKKAMVWDMRSGQ--CVQAFETHESDVNSVRYYPSGDAFASGSDDA----------TCRLYDLRADREVAI 277 (354)
T ss_dssp CCEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEETTS----------CEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCc--EEEEecCCCCCeEEEEEeCCCCEEEEEeCCC----------eEEEEECCCCcEEEE
Confidence 12344333 6888888876643 2344433 24567899999988877776553 799999887776665
Q ss_pred EECCCC-ceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe-EEEEEEEeecCceeEeccc-cCe-E
Q 004094 446 YPLDTF-EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK-LQLIAEKETKGAVYSLNAF-NGK-L 521 (774)
Q Consensus 446 ~~~~~~-E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~k-l~~~~~~~~~g~v~~i~~~-~~~-l 521 (774)
+..... ..+.+ +.+.. ...++++|. ..|.+.+|++.+++ +..+ ..+.++|++++-- +|. |
T Consensus 278 ~~~~~~~~~~~~---~~~s~-~g~~l~~g~----------~d~~i~vwd~~~~~~~~~l--~~h~~~v~~l~~spdg~~l 341 (354)
T 2pbi_B 278 YSKESIIFGASS---VDFSL-SGRLLFAGY----------NDYTINVWDVLKGSRVSIL--FGHENRVSTLRVSPDGTAF 341 (354)
T ss_dssp ECCTTCCSCEEE---EEECT-TSSEEEEEE----------TTSCEEEEETTTCSEEEEE--CCCSSCEEEEEECTTSSCE
T ss_pred EcCCCcccceeE---EEEeC-CCCEEEEEE----------CCCcEEEEECCCCceEEEE--ECCCCcEEEEEECCCCCEE
Confidence 543322 12333 33543 356788776 23789999986554 3322 2467899988854 344 5
Q ss_pred EEEE-CCEEEEE
Q 004094 522 LAAI-NQKIQLY 532 (774)
Q Consensus 522 v~~~-g~~l~v~ 532 (774)
+.+. .++|++|
T Consensus 342 ~sgs~D~~v~vW 353 (354)
T 2pbi_B 342 CSGSWDHTLRVW 353 (354)
T ss_dssp EEEETTSEEEEE
T ss_pred EEEcCCCCEEec
Confidence 4443 3677775
No 35
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=98.20 E-value=0.00095 Score=71.19 Aligned_cols=294 Identities=11% Similarity=0.057 Sum_probs=154.0
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCC-CccCceeEEeeeecCeeEEEEEeCCCcE
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLG-GEIIPRSVLLCAFEGISYLLCALGDGHL 291 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~-~~~~p~si~~~~~~~~~~L~vgl~~G~l 291 (774)
.....|.|+++.+. ...+++.|.. ++.|.||++.+.+........ ......++.+.+. +..+|+.+..||.+
T Consensus 71 ~h~~~v~~~~~~~~-----~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 71 PFDRRVTSLEWHPT-----HPTTVAVGSK-GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF-NTNQLFVSSIRGAT 143 (383)
T ss_dssp CCSSCEEEEEECSS-----CTTEEEEEEB-TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT-EEEEEEEEETTTEE
T ss_pred CCCCCEEEEEECCC-----CCCEEEEEcC-CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC-CCCEEEEEeCCCEE
Confidence 45578999999752 1267888888 999999999876554433321 1122334443321 34678999999999
Q ss_pred EEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCe-EEEecCCc-EEEeeecccCceeeecccCCCCCC
Q 004094 292 LNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPT-VIYSSNKK-LLYSNVNLKEVSHMCPFNSAAFPD 369 (774)
Q Consensus 292 ~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~-~l~~~~~~-~~~~~~~~~~i~~~~~f~~~~~~~ 369 (774)
..|.+.. ..+.......-...++.-..+.. +...++..+.... .++.-+++ +....-....+.+++ |+.. ..
T Consensus 144 ~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~-~~~~--~~ 217 (383)
T 3ei3_B 144 TLRDFSG--SVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAE-FNPR--CD 217 (383)
T ss_dssp EEEETTS--CEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEE-ECSS--CT
T ss_pred EEEECCC--CceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEE-ECCC--CC
Confidence 9987652 11111100000112333333332 2233333333333 33333333 211111223344433 3211 12
Q ss_pred -cEEEEe-CCeEEEEEEcCCC--CeEEEEEeCCCcccEEEEec-CCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEE
Q 004094 370 -SLAIAK-EGELTIGTIDDIQ--KLHIRSIPLGEHPRRICHQE-QSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIS 444 (774)
Q Consensus 370 -~l~~~~-~~~l~i~~l~~~~--~~~~~~i~l~~tp~~i~y~~-~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~ 444 (774)
.++... ++.+++..+.... .-..+.+.-...+..++++| +.+.+++++.+ ..|+++|..+++.+.
T Consensus 218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d----------~~i~iwd~~~~~~~~ 287 (383)
T 3ei3_B 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQR----------NEIRVYSSYDWSKPD 287 (383)
T ss_dssp TEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESS----------SEEEEEETTBTTSCS
T ss_pred CEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCC----------CcEEEEECCCCcccc
Confidence 233333 6789999987643 33455556677889999999 77777766644 379999987765443
Q ss_pred EEECCC-----CceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEE-EeecCceeEeccc-
Q 004094 445 TYPLDT-----FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAE-KETKGAVYSLNAF- 517 (774)
Q Consensus 445 ~~~~~~-----~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~-~~~~g~v~~i~~~- 517 (774)
.+.... +.....+ .+.. ...+++++......- .....|.|++|++..+++..... ....+.+.+++--
T Consensus 288 ~~~~~~~~~~~~~~~~~~---~~~p-~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~ 362 (383)
T 3ei3_B 288 QIIIHPHRQFQHLTPIKA---TWHP-MYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP 362 (383)
T ss_dssp EEEECCBCCCTTSCCCCC---EECS-SSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT
T ss_pred ccccccccccccccceEE---eccC-CCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec
Confidence 332111 1111111 1111 234444443221101 22356899999987665432221 1235556554432
Q ss_pred cC-eEEEEECCEEEEEEe
Q 004094 518 NG-KLLAAINQKIQLYKW 534 (774)
Q Consensus 518 ~~-~lv~~~g~~l~v~~~ 534 (774)
++ .|+.+.++.|++|++
T Consensus 363 ~g~~l~s~sd~~i~iw~~ 380 (383)
T 3ei3_B 363 TGDVLASGMGFNILIWNR 380 (383)
T ss_dssp TSSEEEEEETTEEEEEEC
T ss_pred CccEEEEecCCcEEEEec
Confidence 34 466676789999875
No 36
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=98.20 E-value=0.0045 Score=64.31 Aligned_cols=290 Identities=11% Similarity=0.107 Sum_probs=146.2
Q ss_pred cceEEEEEecCCEEEEEECCC-CCeeEEecCCCccCceeEEeeeecCeeEEEEEeCC-CcEEEEEEecCCCccccceeee
Q 004094 233 SQIAAVGMWTDISVRIFSLPD-LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGD-GHLLNFLLNMKTGELTDRKKVS 310 (774)
Q Consensus 233 ~~~~~vg~~~~~~i~i~~l~~-~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~-G~l~~y~~~~~~~~l~~~~~~~ 310 (774)
..+++++...++.|.+|++.. .+......++....|..+.+.+ +..+|+++..+ |.+..|.++..++.+.......
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 81 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA 81 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECC--CCCEEEEeecCCCeEEEEEecCCCCceeeccccc
Confidence 355666655589999999852 2221111122223466665543 34567776665 9999999885444332211111
Q ss_pred cCCCCeEEEEEEeCCcceEEEecCCCeEEEecCCcEEEeeecccCceeeecccCCCCCCcEEEEe--CCeEEEEEEcCC-
Q 004094 311 LGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAK--EGELTIGTIDDI- 387 (774)
Q Consensus 311 lG~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~~~~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~--~~~l~i~~l~~~- 387 (774)
.+..|..+ .+..+++. ++++. ++.+.+..++..
T Consensus 82 ~~~~~~~~--------------------~~s~dg~~------------------------l~~~~~~~~~i~~~d~~~~~ 117 (343)
T 1ri6_A 82 LPGSLTHI--------------------STDHQGQF------------------------VFVGSYNAGNVSVTRLEDGL 117 (343)
T ss_dssp CSSCCSEE--------------------EECTTSSE------------------------EEEEETTTTEEEEEEEETTE
T ss_pred cCCCCcEE--------------------EEcCCCCE------------------------EEEEecCCCeEEEEECCCCc
Confidence 11111111 01111111 11111 233444444211
Q ss_pred CCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCC-ceE--EE--EEECCCCceEEEEEEEEE
Q 004094 388 QKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQT-FEF--IS--TYPLDTFEYGCSILSCSF 462 (774)
Q Consensus 388 ~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~-~~~--i~--~~~~~~~E~~~si~~~~~ 462 (774)
..-..+.++.+..|..++++|+.+.+++++... ..+.++|..+ .+. +. ......+..+.++. +
T Consensus 118 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~---------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 185 (343)
T 1ri6_A 118 PVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ---------DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMV---F 185 (343)
T ss_dssp EEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG---------TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEE---E
T ss_pred cccccccccCCCCceEEEECCCCCEEEEecCCC---------CEEEEEEecCCCceeeecccccccCCCCCcceEE---E
Confidence 112344556666788899999988776665332 3688887655 433 23 44555555555543 4
Q ss_pred cCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe--CCeEEEEEEEe-ecC------ceeEeccc--cCeEEEEE--CCEE
Q 004094 463 SDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE--DGKLQLIAEKE-TKG------AVYSLNAF--NGKLLAAI--NQKI 529 (774)
Q Consensus 463 ~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~--~~kl~~~~~~~-~~g------~v~~i~~~--~~~lv~~~--g~~l 529 (774)
..+++ +++++.. ..|++.+|++. .++++...... .+. .+.+++-- +.+|+++. ++.|
T Consensus 186 ~pdg~-~l~~~~~---------~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i 255 (343)
T 1ri6_A 186 HPNEQ-YAYCVNE---------LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLI 255 (343)
T ss_dssp CTTSS-EEEEEET---------TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred CCCCC-EEEEEeC---------CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEE
Confidence 44444 4444431 34789999985 34554333322 221 23334422 33566555 3688
Q ss_pred EEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEec-cccEEEEEEEccCCeEEEEe
Q 004094 530 QLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDL-MKSISLLIYKHEEGAIEERA 591 (774)
Q Consensus 530 ~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~-~~Sv~~~~~~~~~~~l~~~a 591 (774)
.+|+++.. .+..+..........+..+.++..++++++++. -..+.++.++.+.+++..+.
T Consensus 256 ~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 256 TVFSVSED-GSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG 317 (343)
T ss_dssp EEEEECTT-SCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEE
T ss_pred EEEEEcCC-CCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcc
Confidence 88886421 111222111111111222334445778999885 56788877777666666554
No 37
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=98.20 E-value=0.0078 Score=61.47 Aligned_cols=271 Identities=13% Similarity=0.080 Sum_probs=151.3
Q ss_pred CcEEEEEE-CCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCC
Q 004094 175 YSVNVATA-NASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD 253 (774)
Q Consensus 175 ~~I~~a~~-~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~ 253 (774)
..|.+.+. ++..++.+..++.+..+.+..++..... ......|.++++.+ ....+++|.. ++.+.+|++.+
T Consensus 19 ~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~v~~~~~~~------~~~~l~~~~~-dg~i~~~~~~~ 90 (313)
T 3odt_A 19 QDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVV-YTGQGFLNSVCYDS------EKELLLFGGK-DTMINGVPLFA 90 (313)
T ss_dssp SCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEE-EECSSCEEEEEEET------TTTEEEEEET-TSCEEEEETTC
T ss_pred CCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEe-ecCCccEEEEEECC------CCCEEEEecC-CCeEEEEEeee
Confidence 35766654 4667777777888888888765543322 23467899999965 2567888877 99999999875
Q ss_pred CC---eeEEecCCC-ccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceE
Q 004094 254 LN---LITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHV 329 (774)
Q Consensus 254 ~~---~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v 329 (774)
.. .+.. +.. .....++.. +..+|+.|..||.+..|+ . +.. .........++.-..+.....+.+
T Consensus 91 ~~~~~~~~~--~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~--~~~--~~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 91 TSGEDPLYT--LIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--E--GSL--VYNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp CTTSCC-CE--ECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--T--TEE--EEEEECCSSCEEEEEEEETTTTEE
T ss_pred cCCCCcccc--hhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--C--CcE--EEecccCCCceeEEEEccCCCCEE
Confidence 32 2211 111 112233333 245789999999999987 1 211 111222233442222222123344
Q ss_pred EEecCC-CeEEEecCCcEEEeee-cccCceeeecccCCCCCCcEEEE-eCCeEEEEEEcCCCCeEEEEEe-CCCcccEEE
Q 004094 330 FAASDR-PTVIYSSNKKLLYSNV-NLKEVSHMCPFNSAAFPDSLAIA-KEGELTIGTIDDIQKLHIRSIP-LGEHPRRIC 405 (774)
Q Consensus 330 ~~~~~~-p~~l~~~~~~~~~~~~-~~~~i~~~~~f~~~~~~~~l~~~-~~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~ 405 (774)
++.+.. ...++........... ....+.+++ |... ..++.. .++.+.+..+.... ..+.+. -...+..++
T Consensus 159 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~-~~~~---~~~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~ 232 (313)
T 3odt_A 159 LTASADKTIKLWQNDKVIKTFSGIHNDVVRHLA-VVDD---GHFISCSNDGLIKLVDMHTGD--VLRTYEGHESFVYCIK 232 (313)
T ss_dssp EEEETTSCEEEEETTEEEEEECSSCSSCEEEEE-EEET---TEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEE
T ss_pred EEEECCCCEEEEecCceEEEEeccCcccEEEEE-EcCC---CeEEEccCCCeEEEEECCchh--hhhhhhcCCceEEEEE
Confidence 444433 3334432222221111 223333333 2211 123333 46788888876543 333443 345678899
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCc
Q 004094 406 HQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPT 485 (774)
Q Consensus 406 y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~ 485 (774)
++|... ++.++.+ ..|+++|..+.+.+..+.... ..+.++. +..+++ +++|+ .
T Consensus 233 ~~~~~~-l~~~~~d----------g~v~iwd~~~~~~~~~~~~~~-~~i~~~~---~~~~~~--~~~~~----------~ 285 (313)
T 3odt_A 233 LLPNGD-IVSCGED----------RTVRIWSKENGSLKQVITLPA-ISIWSVD---CMSNGD--IIVGS----------S 285 (313)
T ss_dssp ECTTSC-EEEEETT----------SEEEEECTTTCCEEEEEECSS-SCEEEEE---ECTTSC--EEEEE----------T
T ss_pred EecCCC-EEEEecC----------CEEEEEECCCCceeEEEeccC-ceEEEEE---EccCCC--EEEEe----------C
Confidence 998873 4444433 479999999888888777653 3455554 444333 44554 3
Q ss_pred ceEEEEEEEeCCe
Q 004094 486 KGRILVFIVEDGK 498 (774)
Q Consensus 486 ~Grl~v~~i~~~k 498 (774)
.|.|++|++.+++
T Consensus 286 dg~i~iw~~~~~~ 298 (313)
T 3odt_A 286 DNLVRIFSQEKSR 298 (313)
T ss_dssp TSCEEEEESCGGG
T ss_pred CCcEEEEeCCCCc
Confidence 4899999987543
No 38
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=98.19 E-value=0.0013 Score=69.33 Aligned_cols=280 Identities=12% Similarity=0.039 Sum_probs=154.8
Q ss_pred CCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCC--eeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcE
Q 004094 214 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLN--LITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHL 291 (774)
Q Consensus 214 l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~--~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l 291 (774)
....|+|+++.+ ...++++|.. ++.|.+|++.+.+ .+....- ......++.+.+ +..+|+.|..||.+
T Consensus 7 ~~~~i~~~~~s~------~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~--~~~~l~~~~~dg~i 76 (372)
T 1k8k_C 7 LVEPISCHAWNK------DRTQIAICPN-NHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAP--DSNRIVTCGTDRNA 76 (372)
T ss_dssp CSSCCCEEEECT------TSSEEEEECS-SSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEET--TTTEEEEEETTSCE
T ss_pred cCCCeEEEEECC------CCCEEEEEeC-CCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeC--CCCEEEEEcCCCeE
Confidence 356789999965 2567888777 9999999997754 3322111 112334454443 45678899999999
Q ss_pred EEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecC-CCeEEEec--CCcEE-Eeeec---ccCceeeecccC
Q 004094 292 LNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASD-RPTVIYSS--NKKLL-YSNVN---LKEVSHMCPFNS 364 (774)
Q Consensus 292 ~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~-~p~~l~~~--~~~~~-~~~~~---~~~i~~~~~f~~ 364 (774)
..|.+... .........-...++.-..+.. +...+++.+. ....++.. ..... ...+. ...+.+++ |+.
T Consensus 77 ~vwd~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~-~~~ 152 (372)
T 1k8k_C 77 YVWTLKGR--TWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD-WHP 152 (372)
T ss_dssp EEEEEETT--EEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE-ECT
T ss_pred EEEECCCC--eeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEE-EcC
Confidence 99998642 2111111111123333333322 2233444433 33333322 12111 11111 12333333 221
Q ss_pred CCCCCcEEEEe-CCeEEEEEEcCC----------------CCeEEEEEe-CCCcccEEEEecCCCEEEEEEeccCCCCCc
Q 004094 365 AAFPDSLAIAK-EGELTIGTIDDI----------------QKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQSCAEE 426 (774)
Q Consensus 365 ~~~~~~l~~~~-~~~l~i~~l~~~----------------~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~ 426 (774)
..+.++... ++.+++..+... ..-..+.+. -...+..++++|+.+.+++++.+
T Consensus 153 --~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------- 223 (372)
T 1k8k_C 153 --NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD------- 223 (372)
T ss_dssp --TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT-------
T ss_pred --CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC-------
Confidence 112344433 678888886421 122334443 23457889999988877776644
Q ss_pred eeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeC--CeEEEEEE
Q 004094 427 SEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVED--GKLQLIAE 504 (774)
Q Consensus 427 ~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~--~kl~~~~~ 504 (774)
..++++|..+.+.+..+... ...+.++.. .. ...+++.|. .|.+++|++.. ++++++..
T Consensus 224 ---~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~---~~-~~~~l~~~~-----------d~~i~i~~~~~~~~~~~~~~~ 284 (372)
T 1k8k_C 224 ---STVCLADADKKMAVATLASE-TLPLLAVTF---IT-ESSLVAAGH-----------DCFPVLFTYDSAAGKLSFGGR 284 (372)
T ss_dssp ---TEEEEEEGGGTTEEEEEECS-SCCEEEEEE---EE-TTEEEEEET-----------TSSCEEEEEETTTTEEEECCC
T ss_pred ---CEEEEEECCCCceeEEEccC-CCCeEEEEE---ec-CCCEEEEEe-----------CCeEEEEEccCcCceEEEeec
Confidence 37999999888888777643 334555542 22 245777662 27889999987 65544311
Q ss_pred --------------------------------------EeecCceeEeccc--cC---eEEEEE--CCEEEEEEee
Q 004094 505 --------------------------------------KETKGAVYSLNAF--NG---KLLAAI--NQKIQLYKWM 535 (774)
Q Consensus 505 --------------------------------------~~~~g~v~~i~~~--~~---~lv~~~--g~~l~v~~~~ 535 (774)
..+.++|++++-+ +| .++++. ...|++|++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 285 LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp CCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred cCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 1356799999744 33 444433 3688998763
No 39
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=98.16 E-value=0.0068 Score=62.33 Aligned_cols=278 Identities=11% Similarity=0.090 Sum_probs=149.2
Q ss_pred CCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEE
Q 004094 214 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLN 293 (774)
Q Consensus 214 l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~ 293 (774)
....|.|+++.| ...+++.|.+ ||.+++|++.+.+.+...... .....++.+. .+..+|+.|..||.+..
T Consensus 12 h~~~V~~~~fsp------~~~~l~s~~~-dg~v~lWd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 12 RSDRVKGIDFHP------TEPWVLTTLY-SGRVELWNYETQVEVRSIQVT-ETPVRAGKFI--ARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp ECSCEEEEEECS------SSSEEEEEET-TSEEEEEETTTTEEEEEEECC-SSCEEEEEEE--GGGTEEEEEETTSEEEE
T ss_pred CCCceEEEEECC------CCCEEEEEcC-CCcEEEEECCCCceeEEeecc-CCcEEEEEEe--CCCCEEEEECCCCEEEE
Confidence 356799999976 2567888888 999999999876554432221 1122344333 24567999999999999
Q ss_pred EEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEec-CCCeEEEecC-C-cEE-EeeecccCceeeecccCCCCCC
Q 004094 294 FLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYSSN-K-KLL-YSNVNLKEVSHMCPFNSAAFPD 369 (774)
Q Consensus 294 y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~l~~~~-~-~~~-~~~~~~~~i~~~~~f~~~~~~~ 369 (774)
|.+.. +... ....-...+|.-..+.. +...++..+ +....++.-+ + .+. ...-+...+.+++ |+. ..+.
T Consensus 82 wd~~~--~~~~--~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~-~~p-~~~~ 154 (304)
T 2ynn_A 82 FNYNT--GEKV--VDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA-FNP-KDPS 154 (304)
T ss_dssp EETTT--CCEE--EEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEE-ECT-TCTT
T ss_pred EECCC--CcEE--EEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEE-ECC-CCCC
Confidence 87653 2211 11111223333222321 222333333 3333344322 2 221 1111112333332 321 1112
Q ss_pred cEEEE-eCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEec--CCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEE
Q 004094 370 SLAIA-KEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQE--QSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTY 446 (774)
Q Consensus 370 ~l~~~-~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~--~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~ 446 (774)
.++.. .++.+++..+............-......+.+++ +.+.++.++.+ ..|++.|..+.+.+.++
T Consensus 155 ~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D----------~~i~iWd~~~~~~~~~~ 224 (304)
T 2ynn_A 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD----------LTIKIWDYQTKSCVATL 224 (304)
T ss_dssp EEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT----------SEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC----------CeEEEEeCCCCccceee
Confidence 33333 3788999887654332221111123345567765 33444444433 38999999988887776
Q ss_pred ECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cC---eEE
Q 004094 447 PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG---KLL 522 (774)
Q Consensus 447 ~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~---~lv 522 (774)
+-.. ..+.++. +.. ..++++.|. ..|.|.+|++...++.... ....+++.+++.. .+ +++
T Consensus 225 ~~h~-~~v~~~~---~~p-~~~~l~s~s----------~Dg~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 225 EGHM-SNVSFAV---FHP-TLPIIISGS----------EDGTLKIWNSSTYKVEKTL-NVGLERSWCIATHPTGRKNYIA 288 (304)
T ss_dssp ECCS-SCEEEEE---ECS-SSSEEEEEE----------TTSCEEEEETTTCCEEEEE-CCSSSSEEEEEECTTCGGGCEE
T ss_pred CCCC-CCEEEEE---ECC-CCCEEEEEc----------CCCeEEEEECCCCceeeec-cCCCccEEEEEECCCCCceEEE
Confidence 5432 3344433 443 345777665 2389999998766544322 1235688888744 22 367
Q ss_pred EEECCEEEEEEe
Q 004094 523 AAINQKIQLYKW 534 (774)
Q Consensus 523 ~~~g~~l~v~~~ 534 (774)
.+..+.+.++.+
T Consensus 289 sg~~~g~~~~~~ 300 (304)
T 2ynn_A 289 SGFDNGFTVLSL 300 (304)
T ss_dssp EEETTEEEEEEC
T ss_pred EecCCceEEEEe
Confidence 777788888775
No 40
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=98.14 E-value=0.005 Score=66.28 Aligned_cols=328 Identities=12% Similarity=0.089 Sum_probs=174.6
Q ss_pred CccccCcceeeeecCCCeEEEEecCcEEEEecCCCceeeeEeCCCCCcEEEEE-E--CCCEEEEEEcCCeEEEEEEcCce
Q 004094 129 GFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVAT-A--NASQVLLATGGGHLVYLEIGDGI 205 (774)
Q Consensus 129 ~f~~~~~Tl~~~~~~~~~~vQVT~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~-~--~~~~lvv~~~~~~~~~~~~~~~~ 205 (774)
.|..+.+.|+++.. ...|++++....+...... +..+..+. . ++..++.+..++.+..+.+..++
T Consensus 63 ~~s~~g~~l~~~~~---------d~~v~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 63 TFEKVGSHLYKARL---------DGHDFLFNTIIRDGSKMLK---RADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp EEEEEETTEEEEEE---------TTEEEEEECCSEETTTTSC---SCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCE
T ss_pred eeeecCCeEEEEEc---------CCcEEEEEecccceeeEEe---cCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcc
Confidence 34445555555543 4467777765432222111 12344433 2 35577777777888777765554
Q ss_pred EEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEE
Q 004094 206 LTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCA 285 (774)
Q Consensus 206 l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vg 285 (774)
.... .......|+|+++.+ ...+++.|.. ++.|.+|++.+.+.+....- ......++.+.+ +..+|+.|
T Consensus 131 ~~~~-~~~h~~~v~~~~~~~------~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~--~~~~l~s~ 199 (420)
T 3vl1_A 131 QREI-DQAHVSEITKLKFFP------SGEALISSSQ-DMQLKIWSVKDGSNPRTLIG-HRATVTDIAIID--RGRNVLSA 199 (420)
T ss_dssp EEEE-TTSSSSCEEEEEECT------TSSEEEEEET-TSEEEEEETTTCCCCEEEEC-CSSCEEEEEEET--TTTEEEEE
T ss_pred eeee-cccccCccEEEEECC------CCCEEEEEeC-CCeEEEEeCCCCcCceEEcC-CCCcEEEEEEcC--CCCEEEEE
Confidence 4332 135567899999965 2467787877 99999999987655432111 112334444432 34678899
Q ss_pred eCCCcEEEEEEecCCCccccceeeecC---CCCeEEEEEEeCCcceEEEecCCCeEEEecCCcEEEeeecccCceeeecc
Q 004094 286 LGDGHLLNFLLNMKTGELTDRKKVSLG---TQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPF 362 (774)
Q Consensus 286 l~~G~l~~y~~~~~~~~l~~~~~~~lG---~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~~~~~~~~~~~~~~i~~~~~f 362 (774)
..||.+..|.+.. +... +..... ..++.-. .+..+. .+. ........+.+ ..|
T Consensus 200 ~~d~~v~iwd~~~--~~~~--~~~~~~~~~~~~v~~~---------~~~~~~---------~~~-~~~~~~~~v~~-~~~ 255 (420)
T 3vl1_A 200 SLDGTIRLWECGT--GTTI--HTFNRKENPHDGVNSI---------ALFVGT---------DRQ-LHEISTSKKNN-LEF 255 (420)
T ss_dssp ETTSCEEEEETTT--TEEE--EEECBTTBTTCCEEEE---------EEEECC---------CSS-CGGGCCCCCCT-TCS
T ss_pred cCCCcEEEeECCC--Ccee--EEeecCCCCCCCccEE---------EEecCC---------cce-eeecccCcccc-eEE
Confidence 9999999987543 2111 011100 0111100 000010 000 00000011111 112
Q ss_pred cCCCCCCc--EEEEe-CCeEEEEEEcCCCCeEEEEEe--CCCcccEEEEecCCC-EEEEEEeccCCCCCceeeeEEEEEE
Q 004094 363 NSAAFPDS--LAIAK-EGELTIGTIDDIQKLHIRSIP--LGEHPRRICHQEQSR-TFAICSLKNQSCAEESEMHFVRLLD 436 (774)
Q Consensus 363 ~~~~~~~~--l~~~~-~~~l~i~~l~~~~~~~~~~i~--l~~tp~~i~y~~~~~-~~~v~~~~~~~~~~~~~~~~l~l~d 436 (774)
.|++ ++... ++.+++..+..... ..++. -...+..++++|..+ .++.++.+ ..|+++|
T Consensus 256 ----s~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d----------g~i~vwd 319 (420)
T 3vl1_A 256 ----GTYGKYVIAGHVSGVITVHNVFSKEQ--TIQLPSKFTCSCNSLTVDGNNANYIYAGYEN----------GMLAQWD 319 (420)
T ss_dssp ----SCTTEEEEEEETTSCEEEEETTTCCE--EEEECCTTSSCEEEEEECSSCTTEEEEEETT----------SEEEEEE
T ss_pred ----cCCCCEEEEEcCCCeEEEEECCCCce--eEEcccccCCCceeEEEeCCCCCEEEEEeCC----------CeEEEEE
Confidence 1232 33333 67788888765432 33333 335678899999888 55555543 3799999
Q ss_pred CCCce-EEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC-e---EE----EEEEEee
Q 004094 437 DQTFE-FISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG-K---LQ----LIAEKET 507 (774)
Q Consensus 437 ~~~~~-~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~-k---l~----~~~~~~~ 507 (774)
..+.+ .+..+.......+.++. + .+ ..+++.|+ ..|.+.+|++.+. + +. .......
T Consensus 320 ~~~~~~~~~~~~~~~~~~v~~~~-~--~~--~~~l~s~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 384 (420)
T 3vl1_A 320 LRSPECPVGEFLINEGTPINNVY-F--AA--GALFVSSG----------FDTSIKLDIISDPESERPAIEFETPTFLVSN 384 (420)
T ss_dssp TTCTTSCSEEEEESTTSCEEEEE-E--ET--TEEEEEET----------TTEEEEEEEECCTTCCSCEECTTSCEEECCS
T ss_pred cCCCcCchhhhhccCCCCceEEE-e--CC--CCEEEEec----------CCccEEEEeccCCCCCccceeccCccEEccC
Confidence 97764 35555555566666663 2 22 35777665 3489999999742 1 10 1112245
Q ss_pred cCceeEeccc-cC----eEE-EEECCEEEEEEe
Q 004094 508 KGAVYSLNAF-NG----KLL-AAINQKIQLYKW 534 (774)
Q Consensus 508 ~g~v~~i~~~-~~----~lv-~~~g~~l~v~~~ 534 (774)
.+.|.+++-. ++ .|+ ++....+.+|+.
T Consensus 385 ~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 385 DDAVSQFCYVSDDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp SCCCCEEEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred CcceEEEEEccCCCCcceEEEEcCCceEEEEec
Confidence 6778887743 23 343 334456777664
No 41
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=98.12 E-value=0.0015 Score=68.90 Aligned_cols=226 Identities=14% Similarity=0.104 Sum_probs=122.2
Q ss_pred eeEEEEEeCCCcEEEEEEecCCCccccceeeecC-CCCeEEEEEEeCCcceEEEec-CCCeEEEecC-CcEEEeeec--c
Q 004094 279 ISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLG-TQPITLRTFSSKNTTHVFAAS-DRPTVIYSSN-KKLLYSNVN--L 353 (774)
Q Consensus 279 ~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG-~~pv~l~~~~~~~~~~v~~~~-~~p~~l~~~~-~~~~~~~~~--~ 353 (774)
...|+.|..||.+..|++..... +...+....| ..+|.=..|.. +.+.++..+ +....++.-+ ++.. ..+. .
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~-~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~-~~~~~h~ 169 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENET-LIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVL-SSYRAHA 169 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSS-CEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE-EEECCCS
T ss_pred CCeEEEEECCCEEEEEeccCCCc-eeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEE-EEEcCcC
Confidence 45788999999999998875321 1111111222 23443333322 223343333 3333344333 3321 1221 2
Q ss_pred cCceeeecccCCCCCCcE-EEE-eCCeEEEEEEcCCCCeEEEEEe-CCCcccEEEEecCCCEEEEEEeccCCCCCceeee
Q 004094 354 KEVSHMCPFNSAAFPDSL-AIA-KEGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMH 430 (774)
Q Consensus 354 ~~i~~~~~f~~~~~~~~l-~~~-~~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~ 430 (774)
..+.+++ |+.. ...+ +.. .++.+++..+...+....-... -+..+..++++|....+++..... .
T Consensus 170 ~~V~~~~-~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d---------g 237 (344)
T 4gqb_B 170 AQVTCVA-ASPH--KDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN---------G 237 (344)
T ss_dssp SCEEEEE-ECSS--CTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT---------S
T ss_pred CceEEEE-ecCC--CCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC---------C
Confidence 3344433 3211 1233 333 3678998887665432221111 133567788998655444443332 3
Q ss_pred EEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCc
Q 004094 431 FVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGA 510 (774)
Q Consensus 431 ~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~ 510 (774)
.|+++|..+.+.+.++.-. ...+.+++ |..++..+|+.|. ..|.|++|++..+++. ....+.++
T Consensus 238 ~v~~wd~~~~~~~~~~~~h-~~~v~~v~---fsp~g~~~lasgs----------~D~~i~vwd~~~~~~~--~~~~H~~~ 301 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVH-SQCVTGLV---FSPHSVPFLASLS----------EDCSLAVLDSSLSELF--RSQAHRDF 301 (344)
T ss_dssp EEEEEESCC--CCEEEECC-SSCEEEEE---ECSSSSCCEEEEE----------TTSCEEEECTTCCEEE--EECCCSSC
T ss_pred cEEEEECCCCcEEEEEcCC-CCCEEEEE---EccCCCeEEEEEe----------CCCeEEEEECCCCcEE--EEcCCCCC
Confidence 7999999888877666542 33455554 5555567787765 2378999988766543 33457899
Q ss_pred eeEeccc--cCeEEEEEC--CEEEEEEee
Q 004094 511 VYSLNAF--NGKLLAAIN--QKIQLYKWM 535 (774)
Q Consensus 511 v~~i~~~--~~~lv~~~g--~~l~v~~~~ 535 (774)
|++++-- +.+|+++.| ++|++|.+.
T Consensus 302 V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 302 VRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp EEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 9999843 446776554 788887763
No 42
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=98.11 E-value=0.00044 Score=72.28 Aligned_cols=263 Identities=13% Similarity=0.073 Sum_probs=144.7
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCC----eeEEecCCCccCceeEEeeeecCee-EEEEEeC
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLN----LITKEHLGGEIIPRSVLLCAFEGIS-YLLCALG 287 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~----~~~~~~l~~~~~p~si~~~~~~~~~-~L~vgl~ 287 (774)
.....|+|+++.+ ...++++|.. ++.|.+|++...+ ....... .....++.+.+ +.. +|++|..
T Consensus 9 ~h~~~v~~~~~s~------~~~~l~~~~~-d~~v~iw~~~~~~~~~~~~~~~~~--~~~v~~~~~~~--~~~~~l~~~~~ 77 (342)
T 1yfq_A 9 APKDYISDIKIIP------SKSLLLITSW-DGSLTVYKFDIQAKNVDLLQSLRY--KHPLLCCNFID--NTDLQIYVGTV 77 (342)
T ss_dssp CCSSCEEEEEEEG------GGTEEEEEET-TSEEEEEEEETTTTEEEEEEEEEC--SSCEEEEEEEE--SSSEEEEEEET
T ss_pred CCCCcEEEEEEcC------CCCEEEEEcC-CCeEEEEEeCCCCccccceeeeec--CCceEEEEECC--CCCcEEEEEcC
Confidence 3457799999975 2567888877 9999999997654 2221111 12334454443 345 7999999
Q ss_pred CCcEEEEEE-ecCCCccccceeeec--CCCCeEEEEEEeCCcceEEEecCCCeE-EEecCC----cEE--Eeee----cc
Q 004094 288 DGHLLNFLL-NMKTGELTDRKKVSL--GTQPITLRTFSSKNTTHVFAASDRPTV-IYSSNK----KLL--YSNV----NL 353 (774)
Q Consensus 288 ~G~l~~y~~-~~~~~~l~~~~~~~l--G~~pv~l~~~~~~~~~~v~~~~~~p~~-l~~~~~----~~~--~~~~----~~ 353 (774)
||.+..|.+ .. +.. +...- ...++.-..+.. ...++..+..-.+ ++..+. ... ..++ ..
T Consensus 78 dg~i~~wd~~~~--~~~---~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 150 (342)
T 1yfq_A 78 QGEILKVDLIGS--PSF---QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK 150 (342)
T ss_dssp TSCEEEECSSSS--SSE---EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC
T ss_pred CCeEEEEEeccC--Cce---EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeC
Confidence 999999976 53 222 11111 223343223321 2333333333332 322111 000 0000 11
Q ss_pred cCceeeecccCCCCCCcEEEEe-CCeEEEEEEcC-CCC-eEEEEEeCCCcccEEEEec-CCCEEEEEEeccCCCCCceee
Q 004094 354 KEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDD-IQK-LHIRSIPLGEHPRRICHQE-QSRTFAICSLKNQSCAEESEM 429 (774)
Q Consensus 354 ~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~-~~~-~~~~~i~l~~tp~~i~y~~-~~~~~~v~~~~~~~~~~~~~~ 429 (774)
..+.+++ |+ ++.++... ++.+.+..+.. ... ......+....++.++++| ..+.+++++.+
T Consensus 151 ~~v~~~~-~~----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d---------- 215 (342)
T 1yfq_A 151 NKIFTMD-TN----SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID---------- 215 (342)
T ss_dssp CCEEEEE-EC----SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT----------
T ss_pred CceEEEE-ec----CCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecC----------
Confidence 2233322 21 34555444 67999999887 432 3444556667789999999 88877777654
Q ss_pred eEEEEEECCCc------eEEEEEECCCC--------ceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe
Q 004094 430 HFVRLLDDQTF------EFISTYPLDTF--------EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE 495 (774)
Q Consensus 430 ~~l~l~d~~~~------~~i~~~~~~~~--------E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~ 495 (774)
..+++.+-... +.+..+..... ..+.++. +.. ...+++.|+ ..|.|++|++.
T Consensus 216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~s~-~~~~l~~~~----------~dg~i~vwd~~ 281 (342)
T 1yfq_A 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE---FSP-RHKFLYTAG----------SDGIISCWNLQ 281 (342)
T ss_dssp SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEE---ECT-TTCCEEEEE----------TTSCEEEEETT
T ss_pred CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEE---EcC-CCCEEEEec----------CCceEEEEcCc
Confidence 36777665443 33333433221 1455543 443 345677776 34899999988
Q ss_pred CCeEEEEEEEee-cCceeEeccccCeEEEE
Q 004094 496 DGKLQLIAEKET-KGAVYSLNAFNGKLLAA 524 (774)
Q Consensus 496 ~~kl~~~~~~~~-~g~v~~i~~~~~~lv~~ 524 (774)
.+++.... ... .++|++++ -++.++++
T Consensus 282 ~~~~~~~~-~~~h~~~v~~~~-~~~~~l~s 309 (342)
T 1yfq_A 282 TRKKIKNF-AKFNEDSVVKIA-CSDNILCL 309 (342)
T ss_dssp TTEEEEEC-CCCSSSEEEEEE-ECSSEEEE
T ss_pred cHhHhhhh-hcccCCCceEec-CCCCeEEE
Confidence 76653222 234 78899999 55554433
No 43
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=0.041 Score=65.91 Aligned_cols=110 Identities=13% Similarity=0.054 Sum_probs=71.7
Q ss_pred CcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECC
Q 004094 175 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 252 (774)
Q Consensus 175 ~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~ 252 (774)
..|.+.+.+ +..++.+..++.+..+.....+... .......|.++++.+ ..+++.+.. |+.|++|++.
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~--~~~~~~~V~~l~fsp-------g~~L~S~s~-D~~v~lWd~~ 87 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI--KLEDRSAIKEMRFVK-------GIYLVVINA-KDTVYVLSLY 87 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE--ECSSCCCEEEEEEET-------TTEEEEEET-TCEEEEEETT
T ss_pred CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE--EcCCCCCEEEEEEcC-------CCEEEEEEC-cCeEEEEECC
Confidence 357776655 4467777777888777654433222 233456799999975 246776766 9999999998
Q ss_pred CCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEec
Q 004094 253 DLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 253 ~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 298 (774)
+.+.+...... ....++.+. .+..+|++|..||.+..|.+..
T Consensus 88 ~~~~~~~~~~~--~~V~~v~~s--p~g~~l~sgs~dg~V~lwd~~~ 129 (902)
T 2oaj_A 88 SQKVLTTVFVP--GKITSIDTD--ASLDWMLIGLQNGSMIVYDIDR 129 (902)
T ss_dssp TCSEEEEEECS--SCEEEEECC--TTCSEEEEEETTSCEEEEETTT
T ss_pred CCcEEEEEcCC--CCEEEEEEC--CCCCEEEEEcCCCcEEEEECCC
Confidence 76665443222 122333333 2457899999999999987653
No 44
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=98.10 E-value=0.013 Score=60.16 Aligned_cols=270 Identities=11% Similarity=0.075 Sum_probs=146.6
Q ss_pred CcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECC
Q 004094 175 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 252 (774)
Q Consensus 175 ~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~ 252 (774)
..|.+.+.+ +..++.+..++.+..+.+..+..... -......|.++++.+ ...+++.|.. |+.|++|++.
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~-~~~~~~~v~~~~~~~------~~~~l~s~s~-d~~i~vwd~~ 85 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRS-IQVTETPVRAGKFIA------RKNWIIVGSD-DFRIRVFNYN 85 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE-EECCSSCEEEEEEEG------GGTEEEEEET-TSEEEEEETT
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEE-eeccCCcEEEEEEeC------CCCEEEEECC-CCEEEEEECC
Confidence 357777765 34666666678888887765443221 112356788888864 2567888887 9999999998
Q ss_pred CCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEe
Q 004094 253 DLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAA 332 (774)
Q Consensus 253 ~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~ 332 (774)
+.+.+....-- .....++.+.+ +..+|+.|..||.+..|.+.... .+. +...-...++.-..|...+...+...
T Consensus 86 ~~~~~~~~~~h-~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~-~~~--~~~~~h~~~v~~v~~~p~~~~~l~sg 159 (304)
T 2ynn_A 86 TGEKVVDFEAH-PDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNW-ALE--QTFEGHEHFVMCVAFNPKDPSTFASG 159 (304)
T ss_dssp TCCEEEEEECC-SSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTT-EEE--EEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred CCcEEEEEeCC-CCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCc-chh--hhhcccCCcEEEEEECCCCCCEEEEE
Confidence 76665432111 11234454433 45678999999999999865421 110 11111123333223321122223333
Q ss_pred c-CCCeEEEecC---CcEEEeeecccCceeeecccCCCCCCcEEEE-eCCeEEEEEEcCCCCeEEEEEeCC-CcccEEEE
Q 004094 333 S-DRPTVIYSSN---KKLLYSNVNLKEVSHMCPFNSAAFPDSLAIA-KEGELTIGTIDDIQKLHIRSIPLG-EHPRRICH 406 (774)
Q Consensus 333 ~-~~p~~l~~~~---~~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~-~~~~l~i~~l~~~~~~~~~~i~l~-~tp~~i~y 406 (774)
+ +....++.-+ ..+.+..-....+..+. |........++.. .++.+++..+.+.. ..+.+.-. ..+..+++
T Consensus 160 s~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~l~s~s~D~~i~iWd~~~~~--~~~~~~~h~~~v~~~~~ 236 (304)
T 2ynn_A 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD-YYPLPDKPYMITASDDLTIKIWDYQTKS--CVATLEGHMSNVSFAVF 236 (304)
T ss_dssp ETTSEEEEEETTCSSCSEEEECCCTTCEEEEE-ECCSTTCCEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEE
T ss_pred eCCCeEEEEECCCCCccceeccCCcCcEEEEE-EEEcCCCCEEEEEcCCCeEEEEeCCCCc--cceeeCCCCCCEEEEEE
Confidence 3 3333333321 11222211112232222 2111111233333 36789988876542 33344332 34677899
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEe
Q 004094 407 QEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGT 474 (774)
Q Consensus 407 ~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT 474 (774)
+|..+.++.++.+ ..|++.|..+++.+.++... .+.+.|+.. .+.++..+++.|.
T Consensus 237 ~p~~~~l~s~s~D----------g~i~iWd~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~asg~ 291 (304)
T 2ynn_A 237 HPTLPIIISGSED----------GTLKIWNSSTYKVEKTLNVG-LERSWCIAT--HPTGRKNYIASGF 291 (304)
T ss_dssp CSSSSEEEEEETT----------SCEEEEETTTCCEEEEECCS-SSSEEEEEE--CTTCGGGCEEEEE
T ss_pred CCCCCEEEEEcCC----------CeEEEEECCCCceeeeccCC-CccEEEEEE--CCCCCceEEEEec
Confidence 9998876666544 37999999999988877653 345555542 2333455777775
No 45
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=98.10 E-value=0.037 Score=65.24 Aligned_cols=382 Identities=13% Similarity=0.157 Sum_probs=199.0
Q ss_pred ccccCcceeeeecCCCeEEEEecCcEEEEecCCCceeeeEeCCCCCcEEEEEEC--CCEEEEEEcCCeEEEEEEcCc-eE
Q 004094 130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDG-IL 206 (774)
Q Consensus 130 f~~~~~Tl~~~~~~~~~~vQVT~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~-~l 206 (774)
|..+.+.|+++.- ...|++++.++++.+..+... ...|.+.+.+ +..++.+..++.+..+.++.+ ..
T Consensus 63 ~s~~~~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 132 (814)
T 3mkq_A 63 FIARKNWIIVGSD---------DFRIRVFNYNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132 (814)
T ss_dssp EEGGGTEEEEEET---------TSEEEEEETTTCCEEEEEECC-SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE
T ss_pred EeCCCCEEEEEeC---------CCeEEEEECCCCcEEEEEecC-CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE
Confidence 4444555555432 345777887766666665542 3468877765 446777777788888887664 33
Q ss_pred EEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEe
Q 004094 207 TEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCAL 286 (774)
Q Consensus 207 ~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl 286 (774)
... .......|.|+++.+. ....+++|.. +|.|.+|++.+.+...............+.+....+..+|++|.
T Consensus 133 ~~~-~~~~~~~v~~~~~~p~-----~~~~l~~~~~-dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 205 (814)
T 3mkq_A 133 EQT-FEGHEHFVMCVAFNPK-----DPSTFASGCL-DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205 (814)
T ss_dssp EEE-EECCSSCEEEEEEETT-----EEEEEEEEET-TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred EEE-EcCCCCcEEEEEEEcC-----CCCEEEEEeC-CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence 322 2245677999998641 1456777777 99999999976544332222111233444444333567899999
Q ss_pred CCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecC-CCeEEEecC-CcE-EEeeecccCceeeeccc
Q 004094 287 GDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASD-RPTVIYSSN-KKL-LYSNVNLKEVSHMCPFN 363 (774)
Q Consensus 287 ~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~-~p~~l~~~~-~~~-~~~~~~~~~i~~~~~f~ 363 (774)
.||.+..|.+.. +.. .....-...++.-..+.. +.+.+++.+. ....++... ++. ...+.....+.+++-..
T Consensus 206 ~dg~i~~~d~~~--~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 280 (814)
T 3mkq_A 206 DDLTIKIWDYQT--KSC--VATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (814)
T ss_dssp TTSEEEEEETTT--TEE--EEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECT
T ss_pred CCCEEEEEECCC--CcE--EEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEcc
Confidence 999999887543 221 111122233443333321 2223433333 333344332 222 21122222333333111
Q ss_pred CCCCCCc-EEEEeCCeEEEEEEcCCCC-----------------------------------------eEEEEE-eCCCc
Q 004094 364 SAAFPDS-LAIAKEGELTIGTIDDIQK-----------------------------------------LHIRSI-PLGEH 400 (774)
Q Consensus 364 ~~~~~~~-l~~~~~~~l~i~~l~~~~~-----------------------------------------~~~~~i-~l~~t 400 (774)
. .... +....++++.+..+..... ...+.+ .....
T Consensus 281 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (814)
T 3mkq_A 281 T--GRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVF 358 (814)
T ss_dssp T--CGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSC
T ss_pred C--CCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccC
Confidence 0 0011 2333455555554432210 001111 12335
Q ss_pred ccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCC
Q 004094 401 PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 480 (774)
Q Consensus 401 p~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~ 480 (774)
|+.++++|+.+.++++. + ..+.+++...|..... ..+.++ .+.. ...++++|+
T Consensus 359 ~~~~~~spdg~~la~~~-~----------~~~~i~~~~~~~~~~~------~~i~~~---~~sp-dg~~la~~~------ 411 (814)
T 3mkq_A 359 PQSLAHSPNGRFVTVVG-D----------GEYVIYTALAWRNKAF------GKCQDF---VWGP-DSNSYALID------ 411 (814)
T ss_dssp CSEEEECTTSSEEEEEE-T----------TEEEEEETTTTEEEEE------EECSEE---EECT-TSSCEEEEC------
T ss_pred CceeEECCCCCEEEEec-C----------CEEEEEECccccccCC------CceEEE---EEeC-CCCeEEEEe------
Confidence 78899999888766665 3 2677888766654321 122232 3443 345677776
Q ss_pred CCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cC----eEE-EEECCEEEEEEeeecCCCchhhhhhcccccce
Q 004094 481 ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG----KLL-AAINQKIQLYKWMLRDDGTRELQSECGHHGHI 554 (774)
Q Consensus 481 e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~----~lv-~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~~ 554 (774)
..|.+.+|+.- ....+.+.+++.- ++ +|+ ++..+.|++|++. .+ +++.. +..+.
T Consensus 412 ----~~g~v~l~~~~---------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~---~~--~~~~~--~~~~~ 471 (814)
T 3mkq_A 412 ----ETGQIKYYKNF---------KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWD---NG--TLVRR--IDVNA 471 (814)
T ss_dssp ----TTCCEEEEETT---------EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTT---TC--CEEEE--ESSCE
T ss_pred ----CCCcEEEEECC---------CCccceEEcCCcCccceecceEEEEecCCEEEEEECC---cC--cEEEE--EecCC
Confidence 23677777411 1234566666543 33 554 4566899998763 12 22222 12222
Q ss_pred EEEEEEEeCCEEEEEe-----ccccEEEEEEEc
Q 004094 555 LALYVQTRGDFIVVGD-----LMKSISLLIYKH 582 (774)
Q Consensus 555 ~~~~l~~~~~~I~vgD-----~~~Sv~~~~~~~ 582 (774)
..+..+..++++++++ ..+++.++.|+.
T Consensus 472 ~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~ 504 (814)
T 3mkq_A 472 KDVIWSDNGELVMIVNTNSNGDEASGYTLLFNK 504 (814)
T ss_dssp EEEEECTTSSEEEEEECCCSSCSCSEEEEEECH
T ss_pred CEEEEcCCCCEEEEEEcCcccCCceEEEEEech
Confidence 2333444577888885 467777777754
No 46
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=98.09 E-value=0.0023 Score=69.34 Aligned_cols=274 Identities=12% Similarity=0.139 Sum_probs=145.4
Q ss_pred ceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCc-cCceeEEeeeecCeeEEEEEeCCCcEEEE
Q 004094 216 YEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGE-IIPRSVLLCAFEGISYLLCALGDGHLLNF 294 (774)
Q Consensus 216 ~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~-~~p~si~~~~~~~~~~L~vgl~~G~l~~y 294 (774)
....+|+.++ .+.++||+ |++|+||++.+.+++....+... ....++++.+ +..+|++|..||.+..|
T Consensus 106 ~y~~~l~wS~-------~n~lAvgl--d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp--dg~~lasgs~Dg~v~iW 174 (420)
T 4gga_A 106 YYLNLVDWSS-------GNVLAVAL--DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYLAVGTSSAEVQLW 174 (420)
T ss_dssp TTCBCEEECT-------TSEEEEEE--TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEEEEEETTSCEEEE
T ss_pred ccceeEEECC-------CCEEEEEe--CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC--CCCEEEEEECCCeEEEE
Confidence 3345666642 46888885 78999999988766544334321 1234554443 45789999999999998
Q ss_pred EEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEec-CCCeE-EEecCC-c--EEEeeecccCceeeecccCCCCCC
Q 004094 295 LLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTV-IYSSNK-K--LLYSNVNLKEVSHMCPFNSAAFPD 369 (774)
Q Consensus 295 ~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~-l~~~~~-~--~~~~~~~~~~i~~~~~f~~~~~~~ 369 (774)
.+.. +.. .+...-...++ ..+..++ .++++| ....+ ++.... . +....-....+..+. +.. ...
T Consensus 175 d~~~--~~~--~~~~~~h~~~v--~~~s~~~--~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~-~~~--~g~ 243 (420)
T 4gga_A 175 DVQQ--QKR--LRNMTSHSARV--GSLSWNS--YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR-WAP--DGR 243 (420)
T ss_dssp ETTT--TEE--EEEECCCSSCE--EEEEEET--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE-ECT--TSS
T ss_pred EcCC--CcE--EEEEeCCCCce--EEEeeCC--CEEEEEeCCCceeEeeecccceeeEEecccccceeeee-ecC--CCC
Confidence 7653 221 11111111122 2222112 234433 22222 222221 1 111111112222221 211 112
Q ss_pred cEEEE-eCCeEEEEEEcCCCC--eEEEEE-eCCCcccEEEEecCCCEEEEE-EeccCCCCCceeeeEEEEEECCCceEEE
Q 004094 370 SLAIA-KEGELTIGTIDDIQK--LHIRSI-PLGEHPRRICHQEQSRTFAIC-SLKNQSCAEESEMHFVRLLDDQTFEFIS 444 (774)
Q Consensus 370 ~l~~~-~~~~l~i~~l~~~~~--~~~~~i-~l~~tp~~i~y~~~~~~~~v~-~~~~~~~~~~~~~~~l~l~d~~~~~~i~ 444 (774)
.++.. .++.+.+........ ...+.. .-...+..++++|....+++. +... -..|++.|..+.+.+.
T Consensus 244 ~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~--------D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 244 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS--------DRHIRIWNVCSGACLS 315 (420)
T ss_dssp EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT--------TCEEEEEETTTTEEEE
T ss_pred eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC--------CCEEEEEeCCccccce
Confidence 33333 367788887765431 222222 233456778888866554443 3221 1379999999998887
Q ss_pred EEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE-eecCceeEeccc-cCe-E
Q 004094 445 TYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK-ETKGAVYSLNAF-NGK-L 521 (774)
Q Consensus 445 ~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~-~~~g~v~~i~~~-~~~-l 521 (774)
.+.. +..+.++.. .. ....+++|++. ..|.|++|++..++. +... .+.++|++++-- +|. |
T Consensus 316 ~~~~--~~~v~~~~~---~~-~~~~lv~~sg~--------~d~~I~iwd~~~~~~--v~~l~gH~~~V~~l~~spdg~~l 379 (420)
T 4gga_A 316 AVDA--HSQVCSILW---SP-HYKELISGHGF--------AQNQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATV 379 (420)
T ss_dssp EEEC--SSCEEEEEE---ET-TTTEEEEEECT--------TTCCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCE
T ss_pred eecc--ccceeeeee---cC-CCCeEEEEEec--------CCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEE
Confidence 6654 344555432 22 34556666643 348899999875543 2222 357899999854 454 5
Q ss_pred EEEE-CCEEEEEEee
Q 004094 522 LAAI-NQKIQLYKWM 535 (774)
Q Consensus 522 v~~~-g~~l~v~~~~ 535 (774)
+.|. .++|++|++.
T Consensus 380 ~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 380 ASAAADETLRLWRCF 394 (420)
T ss_dssp EEEETTTEEEEECCS
T ss_pred EEEecCCeEEEEECC
Confidence 4443 3789998764
No 47
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=98.08 E-value=0.00083 Score=71.87 Aligned_cols=285 Identities=13% Similarity=0.123 Sum_probs=154.1
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEE
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLL 292 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~ 292 (774)
.....|.|+++.+. ..+++.|.+ |+.|.||++.+.+......... ....++++. .+..+|..|..||.+.
T Consensus 64 gH~~~V~~~~~sp~------~~~l~s~s~-D~~v~iWd~~~~~~~~~~~~h~-~~v~~~~~s--~~g~~las~~~d~~v~ 133 (380)
T 3iz6_a 64 GHSGKVYSLDWTPE------KNWIVSASQ-DGRLIVWNALTSQKTHAIKLHC-PWVMECAFA--PNGQSVACGGLDSACS 133 (380)
T ss_dssp CCSSCEEEEEECTT------SSCEEEEET-TSEEEEEETTTTEEEEEEECCC-TTCCCCEEC--TTSSEEEECCSSSCCE
T ss_pred ccccEEEEEEEcCC------CCEEEEEeC-CCeEEEEECCCCccceEEecCC-CCEEEEEEC--CCCCEEEEeeCCCcEE
Confidence 34577999999752 467888877 9999999987765543322211 112233333 2456789999999999
Q ss_pred EEEEecCC---CccccceeeecCC-CCeEEEEEEeCCcceEEEec-CCCeEEEecC-Cc-EEEee-----ecccCceeee
Q 004094 293 NFLLNMKT---GELTDRKKVSLGT-QPITLRTFSSKNTTHVFAAS-DRPTVIYSSN-KK-LLYSN-----VNLKEVSHMC 360 (774)
Q Consensus 293 ~y~~~~~~---~~l~~~~~~~lG~-~pv~l~~~~~~~~~~v~~~~-~~p~~l~~~~-~~-~~~~~-----~~~~~i~~~~ 360 (774)
.|.+.... +.....+. ..|. .++.-..+...+...++..+ +....++.-. +. +.... -....+.+++
T Consensus 134 iw~~~~~~~~~~~~~~~~~-~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 134 IFNLSSQADRDGNMPVSRV-LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212 (380)
T ss_dssp EEECCCCSSCCCSSTTCCB-CCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred EEECCCCccccCCccceee-ccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence 99876421 11111111 1111 11111111111122233333 3333333222 22 21110 0112233322
Q ss_pred cccCCCCCCcEEEE-eCCeEEEEEEcCCCCeEEEEEe-CCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECC
Q 004094 361 PFNSAAFPDSLAIA-KEGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQ 438 (774)
Q Consensus 361 ~f~~~~~~~~l~~~-~~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~ 438 (774)
++. ..++.++.. .++.+++..+....+ ..+.+. -...+..++++|+.+.++.++.+ ..+++.|..
T Consensus 213 -~~~-~~~~~l~sgs~D~~v~~wd~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D----------~~i~lwd~~ 279 (380)
T 3iz6_a 213 -INS-LNANMFISGSCDTTVRLWDLRITSR-AVRTYHGHEGDINSVKFFPDGQRFGTGSDD----------GTCRLFDMR 279 (380)
T ss_dssp -ECS-SSCCEEEEEETTSCEEEEETTTTCC-CCEEECCCSSCCCEEEECTTSSEEEEECSS----------SCEEEEETT
T ss_pred -eec-CCCCEEEEEECCCeEEEEECCCCCc-ceEEECCcCCCeEEEEEecCCCeEEEEcCC----------CeEEEEECC
Confidence 111 112233333 367888888764322 223332 23457889999998877766644 379999999
Q ss_pred CceEEEEEECCCCc------eEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEE-E--EeecC
Q 004094 439 TFEFISTYPLDTFE------YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIA-E--KETKG 509 (774)
Q Consensus 439 ~~~~i~~~~~~~~E------~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~-~--~~~~g 509 (774)
+.+.+..+...+.. .+.+++ +.. ...+++.|+ ..|.+++|++..++..... . ..+.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~~---~s~-~g~~l~~g~----------~dg~i~vwd~~~~~~~~~~~~~~~~h~~ 345 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNELPIVTSVA---FSI-SGRLLFAGY----------SNGDCYVWDTLLAEMVLNLGTLQNSHEG 345 (380)
T ss_dssp TTEEEEEECCCCSSSCCSSCSCSEEE---ECS-SSSEEEEEC----------TTSCEEEEETTTCCEEEEECCSCSSCCC
T ss_pred CCcEEEEecccccccccccCceEEEE---ECC-CCCEEEEEE----------CCCCEEEEECCCCceEEEEecccCCCCC
Confidence 98888777654321 244443 443 356777776 3489999998655433222 1 24578
Q ss_pred ceeEeccc-cCeEEEEEC--CEEEEEEee
Q 004094 510 AVYSLNAF-NGKLLAAIN--QKIQLYKWM 535 (774)
Q Consensus 510 ~v~~i~~~-~~~lv~~~g--~~l~v~~~~ 535 (774)
+|++++-- +|.++++.+ +.|++|++.
T Consensus 346 ~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 346 RISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred ceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 89998854 455554443 689998763
No 48
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=98.07 E-value=0.0058 Score=64.36 Aligned_cols=226 Identities=12% Similarity=0.086 Sum_probs=120.8
Q ss_pred CcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEec-cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEEC
Q 004094 175 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHA-QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL 251 (774)
Q Consensus 175 ~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~-~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l 251 (774)
.+|.+.+.+ +..++++..++.+..+.++.+++..+... .....|+|+++.+ ...+++.|.. ++.+.+|++
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~------~~~~l~~~~~-dg~i~vwd~ 81 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP------DSNRIVTCGT-DRNAYVWTL 81 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET------TTTEEEEEET-TSCEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC------CCCEEEEEcC-CCeEEEEEC
Confidence 457677665 44666665678888888877654333222 3567899999965 2467777777 999999999
Q ss_pred CCCCeeEEecCC-CccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecC-CCCeEEEEEEeCCcceE
Q 004094 252 PDLNLITKEHLG-GEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLG-TQPITLRTFSSKNTTHV 329 (774)
Q Consensus 252 ~~~~~~~~~~l~-~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG-~~pv~l~~~~~~~~~~v 329 (774)
.+.+......+. ....+.++.+.+ +..+|++|..||.+..|.++.... ....+....+ ..++.-..+.. +...+
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~~-~~~~l 157 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQEND-WWVCKHIKKPIRSTVLSLDWHP-NSVLL 157 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTT-EEEEEEECTTCCSCEEEEEECT-TSSEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCc-ceeeeeeecccCCCeeEEEEcC-CCCEE
Confidence 765543322221 112334444432 456899999999999999886431 1111111112 22332222221 22233
Q ss_pred EEec-CCCeEEEec-------------------CCc-EEEeeecccCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCC
Q 004094 330 FAAS-DRPTVIYSS-------------------NKK-LLYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDI 387 (774)
Q Consensus 330 ~~~~-~~p~~l~~~-------------------~~~-~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~ 387 (774)
++.+ +....++.. .++ +....-....+.+++ |+. ..+.++... ++.+++..+...
T Consensus 158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~--~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC-FSA--NGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE-ECS--SSSEEEEEETTTEEEEEEGGGT
T ss_pred EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEE-ECC--CCCEEEEEeCCCEEEEEECCCC
Confidence 3333 333334431 112 111111112333332 221 112344333 678999888765
Q ss_pred CCeEEEEEeCCC-cccEEEEecCCCEEEEE
Q 004094 388 QKLHIRSIPLGE-HPRRICHQEQSRTFAIC 416 (774)
Q Consensus 388 ~~~~~~~i~l~~-tp~~i~y~~~~~~~~v~ 416 (774)
. ..+.+.... .+..++++|+.+.++.+
T Consensus 235 ~--~~~~~~~~~~~v~~~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 235 M--AVATLASETLPLLAVTFITESSLVAAG 262 (372)
T ss_dssp T--EEEEEECSSCCEEEEEEEETTEEEEEE
T ss_pred c--eeEEEccCCCCeEEEEEecCCCEEEEE
Confidence 4 344444443 56889999887654444
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=98.06 E-value=0.0048 Score=66.42 Aligned_cols=310 Identities=17% Similarity=0.087 Sum_probs=165.5
Q ss_pred eeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEec-CCCeEEEecC-CcEE-EeeecccC
Q 004094 279 ISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYSSN-KKLL-YSNVNLKE 355 (774)
Q Consensus 279 ~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~l~~~~-~~~~-~~~~~~~~ 355 (774)
..+|+.|..||.+..|.+.... ... ... +...+.+..+.. +...+++.+ +....++..+ +... ...-....
T Consensus 68 g~~l~~~~~d~~v~i~d~~~~~--~~~--~~~-~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~ 141 (420)
T 3vl1_A 68 GSHLYKARLDGHDFLFNTIIRD--GSK--MLK-RADYTAVDTAKL-QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSE 141 (420)
T ss_dssp ETTEEEEEETTEEEEEECCSEE--TTT--TSC-SCCEEEEEEECS-SSCEEEEEETTSCEEEECTTSCEEEEETTSSSSC
T ss_pred CCeEEEEEcCCcEEEEEecccc--eee--EEe-cCCceEEEEEec-CCCEEEEEECCCCEEEEeCCCcceeeecccccCc
Confidence 4568899999999999865421 110 001 111222222222 223333333 3334444333 2221 11112234
Q ss_pred ceeeecccCCCCCCcEEEEe-CCeEEEEEEcCCCCeEEEEEe-CCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEE
Q 004094 356 VSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVR 433 (774)
Q Consensus 356 i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~ 433 (774)
+.+++ |+. ..+.++... ++.+++..+...... +.+. -...+..++++|+.+.++.++.+. .++
T Consensus 142 v~~~~-~~~--~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d~----------~v~ 206 (420)
T 3vl1_A 142 ITKLK-FFP--SGEALISSSQDMQLKIWSVKDGSNP--RTLIGHRATVTDIAIIDRGRNVLSASLDG----------TIR 206 (420)
T ss_dssp EEEEE-ECT--TSSEEEEEETTSEEEEEETTTCCCC--EEEECCSSCEEEEEEETTTTEEEEEETTS----------CEE
T ss_pred cEEEE-ECC--CCCEEEEEeCCCeEEEEeCCCCcCc--eEEcCCCCcEEEEEEcCCCCEEEEEcCCC----------cEE
Confidence 44433 321 122344443 678999988765432 3333 345678899999988877666543 699
Q ss_pred EEECCCceEEEEEECC--CCceEEEEEEEEEc-----------------CCCceEEEEEeeeeCCCCCCCcceEEEEEEE
Q 004094 434 LLDDQTFEFISTYPLD--TFEYGCSILSCSFS-----------------DDSNVYYCVGTAYVLPEENEPTKGRILVFIV 494 (774)
Q Consensus 434 l~d~~~~~~i~~~~~~--~~E~~~si~~~~~~-----------------~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i 494 (774)
++|..+.+.+..+... ....+.++....-. .....++++|+ ..|.|.+|++
T Consensus 207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~i~d~ 276 (420)
T 3vl1_A 207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH----------VSGVITVHNV 276 (420)
T ss_dssp EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE----------TTSCEEEEET
T ss_pred EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc----------CCCeEEEEEC
Confidence 9999988888877653 34445555432110 01356788776 3488999998
Q ss_pred eCCeEEEEEEEeecCceeEecccc-C--eEEEEEC-CEEEEEEeeecCCCchhhhhhcccccceEEEEEEE-eCCEEEEE
Q 004094 495 EDGKLQLIAEKETKGAVYSLNAFN-G--KLLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQT-RGDFIVVG 569 (774)
Q Consensus 495 ~~~kl~~~~~~~~~g~v~~i~~~~-~--~lv~~~g-~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~-~~~~I~vg 569 (774)
..++..........++|++++-.. + +|+++.. ..|++|++. .+...+........ ..+..+.. .+++++.|
T Consensus 277 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~---~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~s~ 352 (420)
T 3vl1_A 277 FSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR---SPECPVGEFLINEG-TPINNVYFAAGALFVSS 352 (420)
T ss_dssp TTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT---CTTSCSEEEEESTT-SCEEEEEEETTEEEEEE
T ss_pred CCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC---CCcCchhhhhccCC-CCceEEEeCCCCEEEEe
Confidence 765544333344678899988653 3 4554443 688887753 12111211111111 12233333 35577788
Q ss_pred eccccEEEEEEEccC--Ce------EEEEeccCCcceeEEEEEeeCCe----EEEEccCCcEEEEeeC
Q 004094 570 DLMKSISLLIYKHEE--GA------IEERARDYNANWMSAVEILDDDI----YLGAENNFNLFTVRKN 625 (774)
Q Consensus 570 D~~~Sv~~~~~~~~~--~~------l~~~a~D~~~~~v~~~~~l~~~~----~l~~D~~gnl~~l~~~ 625 (774)
..-..+.++...... .. ...+. .....+.++.|..++. ++++..+|.+.++...
T Consensus 353 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 353 GFDTSIKLDIISDPESERPAIEFETPTFLV--SNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp TTTEEEEEEEECCTTCCSCEECTTSCEEEC--CSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred cCCccEEEEeccCCCCCccceeccCccEEc--cCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 777778776654421 11 11111 1123455566665544 7777788888777754
No 50
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=98.04 E-value=0.0032 Score=65.56 Aligned_cols=282 Identities=16% Similarity=0.173 Sum_probs=149.9
Q ss_pred ccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCc-cCceeEEeeeecCeeEEEEEeCCCc
Q 004094 212 AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGE-IIPRSVLLCAFEGISYLLCALGDGH 290 (774)
Q Consensus 212 ~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~-~~p~si~~~~~~~~~~L~vgl~~G~ 290 (774)
......|.|+++.+.. ......++.|.+ |+.++||++.+.+......+... ....++.+. .+...+..|..||.
T Consensus 29 ~~H~~~V~~v~~~~~~--~~~~~~l~tgs~-D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~--~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNK--KENSETVVTGSL-DDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS--HTLPIAASSSLDAH 103 (321)
T ss_dssp TSSSSCEEEEEEC---------CEEEEEET-TSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC--SSSSEEEEEETTSE
T ss_pred ccCCCcEEEEEEecCC--CCCCCEEEEEcC-CCCEEEEECCCCCeeeeeeeccCCCCEEEEEEC--CCCCEEEEEeCCCc
Confidence 3567889999986521 112457777777 99999999876443222223211 112233222 23467888999999
Q ss_pred EEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCC-CeEEEecC-CcEEE-eeecccCceeeecccCCCC
Q 004094 291 LLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDR-PTVIYSSN-KKLLY-SNVNLKEVSHMCPFNSAAF 367 (774)
Q Consensus 291 l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~-p~~l~~~~-~~~~~-~~~~~~~i~~~~~f~~~~~ 367 (774)
+..|.+.. +.. .+....+..++.-..+.. +...+++.+.. ...++..+ ++..+ .......+.+++ |+. .
T Consensus 104 i~lWd~~~--~~~--~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~-~sp--d 175 (321)
T 3ow8_A 104 IRLWDLEN--GKQ--IKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA-YSP--D 175 (321)
T ss_dssp EEEEETTT--TEE--EEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEE-ECT--T
T ss_pred EEEEECCC--CCE--EEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEE-ECC--C
Confidence 99987653 221 112222332322122221 22233333322 23333322 22211 111112233322 321 1
Q ss_pred CCcEEEEe-CCeEEEEEEcCCCCeEEEEEeC-CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEE
Q 004094 368 PDSLAIAK-EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 445 (774)
Q Consensus 368 ~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~ 445 (774)
.+.++... ++.+++..+.+.. ..+.+.- ...++.++++|+.+.++.++.+ ..|++.|..+.+.+..
T Consensus 176 g~~lasg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~spd~~~l~s~s~d----------g~i~iwd~~~~~~~~~ 243 (321)
T 3ow8_A 176 GKYLASGAIDGIINIFDIATGK--LLHTLEGHAMPIRSLTFSPDSQLLVTASDD----------GYIKIYDVQHANLAGT 243 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTTE--EEEEECCCSSCCCEEEECTTSCEEEEECTT----------SCEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCc--EEEEEcccCCceeEEEEcCCCCEEEEEcCC----------CeEEEEECCCcceeEE
Confidence 12344333 6778888776532 3344432 2356889999998877766544 3699999988777665
Q ss_pred EECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEEE
Q 004094 446 YPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAA 524 (774)
Q Consensus 446 ~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~ 524 (774)
+.- ....+.++. +..+ ..+++.|. ..|.+.+|++..+++.... ....++|++++-- ++..+++
T Consensus 244 ~~~-h~~~v~~~~---~sp~-~~~l~s~s----------~D~~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~g~~l~s 307 (321)
T 3ow8_A 244 LSG-HASWVLNVA---FCPD-DTHFVSSS----------SDKSVKVWDVGTRTCVHTF-FDHQDQVWGVKYNGNGSKIVS 307 (321)
T ss_dssp ECC-CSSCEEEEE---ECTT-SSEEEEEE----------TTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEE
T ss_pred EcC-CCCceEEEE---ECCC-CCEEEEEe----------CCCcEEEEeCCCCEEEEEE-cCCCCcEEEEEECCCCCEEEE
Confidence 432 233455544 4433 45677665 2378999998766543222 2467899998855 3444443
Q ss_pred E--CCEEEEEEe
Q 004094 525 I--NQKIQLYKW 534 (774)
Q Consensus 525 ~--g~~l~v~~~ 534 (774)
. .++|++|+.
T Consensus 308 ~~~d~~i~vwd~ 319 (321)
T 3ow8_A 308 VGDDQEIHIYDC 319 (321)
T ss_dssp EETTCCEEEEEC
T ss_pred EeCCCeEEEEeC
Confidence 3 357888763
No 51
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=98.02 E-value=0.0058 Score=64.03 Aligned_cols=267 Identities=12% Similarity=0.069 Sum_probs=151.8
Q ss_pred EeCCeEEEEEEcCCCCe-EEEEEe---CCCcccEEEEecCCC----EEEEEEeccCCCCCceeeeEEEEEECCCceEEEE
Q 004094 374 AKEGELTIGTIDDIQKL-HIRSIP---LGEHPRRICHQEQSR----TFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 445 (774)
Q Consensus 374 ~~~~~l~i~~l~~~~~~-~~~~i~---l~~tp~~i~y~~~~~----~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~ 445 (774)
..++.+.+..+.....+ ..+... -...+..+++++..+ .+++++.+ ..|+++|..+.+.+..
T Consensus 41 ~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d----------g~i~v~d~~~~~~~~~ 110 (366)
T 3k26_A 41 VGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR----------GIIRIINPITMQCIKH 110 (366)
T ss_dssp EETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT----------CEEEEECTTTCCEEEE
T ss_pred CCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC----------CEEEEEEchhceEeee
Confidence 34778899988865433 222222 335678899998843 45545433 4899999988888877
Q ss_pred EECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEE--EeecCceeEeccc-cC-eE
Q 004094 446 YPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAE--KETKGAVYSLNAF-NG-KL 521 (774)
Q Consensus 446 ~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~--~~~~g~v~~i~~~-~~-~l 521 (774)
+.- ....+.++. +......+++.|+ ..|.|.+|++..++...... ....++|++++-. ++ +|
T Consensus 111 ~~~-~~~~i~~~~---~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 176 (366)
T 3k26_A 111 YVG-HGNAINELK---FHPRDPNLLLSVS----------KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI 176 (366)
T ss_dssp EES-CCSCEEEEE---ECSSCTTEEEEEE----------TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEE
T ss_pred ecC-CCCcEEEEE---ECCCCCCEEEEEe----------CCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEE
Confidence 663 344556654 4432456788776 34899999998765443332 3468899998854 34 45
Q ss_pred EEEE-CCEEEEEEeeecCCCchhhhhhcc-------------------------cc-cceEEEEEEEeCCEEEEEecccc
Q 004094 522 LAAI-NQKIQLYKWMLRDDGTRELQSECG-------------------------HH-GHILALYVQTRGDFIVVGDLMKS 574 (774)
Q Consensus 522 v~~~-g~~l~v~~~~~~~~~~~~l~~~~~-------------------------~~-~~~~~~~l~~~~~~I~vgD~~~S 574 (774)
+++. ++.|++|++.. + +.+..... .. ....+.++...++++++|..-..
T Consensus 177 ~~~~~dg~i~i~d~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~ 252 (366)
T 3k26_A 177 MSCGMDHSLKLWRINS---K-RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENA 252 (366)
T ss_dssp EEEETTSCEEEEESCS---H-HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSE
T ss_pred EEecCCCCEEEEECCC---C-ccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCE
Confidence 4443 46899987631 1 11110000 00 11123445555999999999888
Q ss_pred EEEEEEEccCC----------eEEEEe-ccCCcceeEEEEEeeC--C-eEEEEccCCcEEEEeeCCCCCCccccceeeeE
Q 004094 575 ISLLIYKHEEG----------AIEERA-RDYNANWMSAVEILDD--D-IYLGAENNFNLFTVRKNSEGATDEERGRLEVV 640 (774)
Q Consensus 575 v~~~~~~~~~~----------~l~~~a-~D~~~~~v~~~~~l~~--~-~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~ 640 (774)
+.++....... ....+. -..+...++++.+-.+ + .++++..+|.+.+++....... .. ..
T Consensus 253 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~----~~--~~ 326 (366)
T 3k26_A 253 IVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH----KA--KC 326 (366)
T ss_dssp EEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG----GC--EE
T ss_pred EEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc----cc--cc
Confidence 88765543221 111111 1111222333334333 3 4567888999999998653211 11 11
Q ss_pred EEEEc---CcccceEEeeeeeecCCCCCCCCccEEEEEccccceEEEE
Q 004094 641 GEYHL---GEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIA 685 (774)
Q Consensus 641 ~~f~l---g~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gsi~~i~ 685 (774)
..+.- ...|+++... .....++.++.+|.|...-
T Consensus 327 ~~~~~~~~~~~v~~~~~s-----------~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 327 TTLTHHKCGAAIRQTSFS-----------RDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp EEECCTTCCSCEEEEEEC-----------TTSSEEEEEETTSEEEEEE
T ss_pred eEEcccccCCceEEEEeC-----------CCCCeEEEEeCCCEEEEEE
Confidence 12221 3455554321 1346788889999987653
No 52
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=98.02 E-value=8e-05 Score=81.57 Aligned_cols=298 Identities=14% Similarity=0.088 Sum_probs=149.1
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCC-ccCceeEEeeeecCeeEEEEEeCCCcE
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHL 291 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l 291 (774)
.++..|+||++.|.. ...+++|.. ||.|.||++...+......+.. .....++.+.+. +..+|+.|..||.+
T Consensus 117 ~~~~~V~~l~~~P~~-----~~~lasGs~-dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~-~~~~l~s~s~D~~v 189 (435)
T 4e54_B 117 PFDRRATSLAWHPTH-----PSTVAVGSK-GGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL-NTNQFYASSMEGTT 189 (435)
T ss_dssp ECSSCEEEEEECSSC-----TTCEEEEET-TSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS-CTTEEEEECSSSCE
T ss_pred CCCCCEEEEEEeCCC-----CCEEEEEeC-CCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC-CCCEEEEEeCCCEE
Confidence 345679999997632 467888988 9999999987543322222211 122345544322 34578899999999
Q ss_pred EEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCe-EEEecCCc-EEEeeecccCceeeecccCCCCCC
Q 004094 292 LNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPT-VIYSSNKK-LLYSNVNLKEVSHMCPFNSAAFPD 369 (774)
Q Consensus 292 ~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~-~l~~~~~~-~~~~~~~~~~i~~~~~f~~~~~~~ 369 (774)
..|.+.. +.+.......-...++.-..+.. +...+++.+.... .++..+++ +.....+...|.+++ |+. ..+.
T Consensus 190 ~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~-~~p-~~~~ 264 (435)
T 4e54_B 190 RLQDFKG--NILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVA-LNP-CCDW 264 (435)
T ss_dssp EEEETTS--CEEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEE-ECT-TCSS
T ss_pred EEeeccC--CceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeee-ecC-CCce
Confidence 9987542 21111000000011111111221 2223333333223 23332322 111111123344332 321 1111
Q ss_pred cEEEEe-CCeEEEEEEcCCCCe--EEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEE
Q 004094 370 SLAIAK-EGELTIGTIDDIQKL--HIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTY 446 (774)
Q Consensus 370 ~l~~~~-~~~l~i~~l~~~~~~--~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~ 446 (774)
.++... ++.+++..+...... ......-...+..++|+|+.+.++.++.+. .|+++|..+++.....
T Consensus 265 ~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~----------~i~iwd~~~~~~~~~~ 334 (435)
T 4e54_B 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS----------EIRVYSASQWDCPLGL 334 (435)
T ss_dssp EEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS----------CEEEEESSSSSSEEEE
T ss_pred EEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC----------EEEEEECCCCccceEE
Confidence 233333 577888877654321 111111133567788999888777766543 6999999888766544
Q ss_pred ECCCCc---eEEEEEEEEEcCCCceEEEEEeeeeCCC--CCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc--cC
Q 004094 447 PLDTFE---YGCSILSCSFSDDSNVYYCVGTAYVLPE--ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF--NG 519 (774)
Q Consensus 447 ~~~~~E---~~~si~~~~~~~~~~~~i~VGT~~~~~~--e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~--~~ 519 (774)
....+. ....+.. .+. ....++++|....... -.....+.|.+|++..+++.........++|.+++.+ +|
T Consensus 335 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg 412 (435)
T 4e54_B 335 IPHPHRHFQHLTPIKA-AWH-PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG 412 (435)
T ss_dssp CCCCCCCCSSSCCCBC-EEC-SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTS
T ss_pred ecccccccccceeEEE-EEc-CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC
Confidence 332221 1111111 111 2345667665321100 0111234688998876665433333456778887665 34
Q ss_pred -eEEEEECCEEEEEEe
Q 004094 520 -KLLAAINQKIQLYKW 534 (774)
Q Consensus 520 -~lv~~~g~~l~v~~~ 534 (774)
.|+.+.+.+|++|++
T Consensus 413 ~~lasg~d~~i~iW~~ 428 (435)
T 4e54_B 413 DTLASAMGYHILIWSQ 428 (435)
T ss_dssp SCEEEECSSEEEECCC
T ss_pred CEEEEEcCCcEEEEEC
Confidence 466677788888664
No 53
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=98.01 E-value=0.0041 Score=63.86 Aligned_cols=274 Identities=12% Similarity=0.097 Sum_probs=138.7
Q ss_pred eEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCc-cCceeEEeeeecCeeEEEEEeCCCcEEEEEE
Q 004094 218 ISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGE-IIPRSVLLCAFEGISYLLCALGDGHLLNFLL 296 (774)
Q Consensus 218 is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~-~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~ 296 (774)
.+||+.++ .+.+++|+ |++|+||++.+.+++....+... ....++.+.+ +..+|+.|..||.+..|.+
T Consensus 28 ~~~l~WS~-------~~~lAvg~--D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~--~~~~l~sgs~Dg~v~iw~~ 96 (318)
T 4ggc_A 28 LNLVDWSS-------GNVLAVAL--DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYLAVGTSSAEVQLWDV 96 (318)
T ss_dssp CBCEEECT-------TSEEEEEE--TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEEEEEETTSEEEEEET
T ss_pred ceEEEECC-------CCEEEEEe--CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC--CCCEEEEEECCCcEEEeec
Confidence 46778753 45788874 89999999988776554443321 1223444332 4568999999999999876
Q ss_pred ecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCeEE-EecC-Cc--EEEeeecccCceeeecccCCCCCCcEE
Q 004094 297 NMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI-YSSN-KK--LLYSNVNLKEVSHMCPFNSAAFPDSLA 372 (774)
Q Consensus 297 ~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l-~~~~-~~--~~~~~~~~~~i~~~~~f~~~~~~~~l~ 372 (774)
.. ++.. +...-...++. .+...+ ..+...+....+. .... +. +....-....+.... +.. ..+.++
T Consensus 97 ~~--~~~~--~~~~~h~~~~~--~~~~~~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~l~ 166 (318)
T 4ggc_A 97 QQ--QKRL--RNMTSHSARVG--SLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR-WAP--DGRHLA 166 (318)
T ss_dssp TT--TEEE--EEEECCSSCEE--EEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE-ECT--TSSEEE
T ss_pred CC--ceeE--EEecCccceEE--EeecCC-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEE-EcC--CCCEEE
Confidence 53 3211 11111112221 121111 2222223332222 2221 11 111111112222222 211 122344
Q ss_pred EEe-CCeEEEEEEcCCCC---eEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEEC
Q 004094 373 IAK-EGELTIGTIDDIQK---LHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPL 448 (774)
Q Consensus 373 ~~~-~~~l~i~~l~~~~~---~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~ 448 (774)
... ++.+++..+.+... ...........+..+.+++....++...... ....+++.|..+.........
T Consensus 167 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~i~lwd~~~~~~~~~~~~ 239 (318)
T 4ggc_A 167 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT-------SDRHIRIWNVCSGACLSAVDA 239 (318)
T ss_dssp EEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT-------TTCEEEEEETTTCCEEEEEEC
T ss_pred EEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecC-------CCCEEEEEecccccccccccc
Confidence 333 67788888765432 1222222334456677777665544433221 124789999887766654443
Q ss_pred CCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEEEE--
Q 004094 449 DTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI-- 525 (774)
Q Consensus 449 ~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~~-- 525 (774)
. ..+.++. +.. ...+++++++. ..|.|++|++..+++.... ..+.++|++++-- +|.++++.
T Consensus 240 ~--~~v~~~~---~~~-~~~~~~~~sg~--------~d~~i~iwd~~~~~~~~~l-~gH~~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 240 H--SQVCSIL---WSP-HYKELISGHGF--------AQNQLVIWKYPTMAKVAEL-KGHTSRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp S--SCEEEEE---EET-TTTEEEEEECT--------TTCCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSCEEEEET
T ss_pred e--eeeeeee---ecc-cccceEEEEEc--------CCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEec
Confidence 2 2333332 222 24455555532 3488999998765432211 2357899999854 45444433
Q ss_pred CCEEEEEEe
Q 004094 526 NQKIQLYKW 534 (774)
Q Consensus 526 g~~l~v~~~ 534 (774)
.++|++|++
T Consensus 305 D~~v~iWd~ 313 (318)
T 4ggc_A 305 DETLRLWRC 313 (318)
T ss_dssp TTEEEEECC
T ss_pred CCeEEEEEC
Confidence 378999775
No 54
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.99 E-value=5.8e-05 Score=81.55 Aligned_cols=288 Identities=11% Similarity=0.080 Sum_probs=145.4
Q ss_pred ceeEEEEeCCCCCCCCCcceEEEE----------EecCCEEEEEECCCCCee-EEecCCCccCceeEEeeeecCeeEEEE
Q 004094 216 YEISCLDINPIGENPSYSQIAAVG----------MWTDISVRIFSLPDLNLI-TKEHLGGEIIPRSVLLCAFEGISYLLC 284 (774)
Q Consensus 216 ~~is~l~~~~~~~~~~~~~~~~vg----------~~~~~~i~i~~l~~~~~~-~~~~l~~~~~p~si~~~~~~~~~~L~v 284 (774)
..++|+++++. ...+++.| .. ++.|+||++...+.. ....+.......++.+.+ +..+|+.
T Consensus 13 ~~v~~~~~sp~-----g~~~l~~g~~~g~~~~~~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~ 84 (416)
T 2pm9_A 13 SRTATFAWSHD-----KIPLLVSGTVSGTVDANFST-DSSLELWSLLAADSEKPIASLQVDSKFNDLDWSH--NNKIIAG 84 (416)
T ss_dssp EESCBCCBCSS-----SSCEEEEBCBSSCCCSSCCC-CCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECS--SSSCEEE
T ss_pred hhcceEeeCCC-----CCCEEEEEecCcccccccCC-CCeEEEEEccCCCCCcEEEEEecCCceEEEEECC--CCCeEEE
Confidence 35778888652 13477777 45 889999999764321 001111112233444332 4567899
Q ss_pred EeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCeE-EEecC-Cc------EEEee----ec
Q 004094 285 ALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTV-IYSSN-KK------LLYSN----VN 352 (774)
Q Consensus 285 gl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~-l~~~~-~~------~~~~~----~~ 352 (774)
|..||.+..|.+..........+...-...++.-..+..++...++..+..-.+ ++..+ ++ ..+.. -.
T Consensus 85 ~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2pm9_A 85 ALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS 164 (416)
T ss_dssp EESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred EccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence 999999999987652111111111111223443333322223334444433332 33221 11 00000 01
Q ss_pred ccCceeeecccCCCCCCcEEEE-eCCeEEEEEEcCCCCeEEEEEeC-------CCcccEEEEecCCCEEEEEEeccCCCC
Q 004094 353 LKEVSHMCPFNSAAFPDSLAIA-KEGELTIGTIDDIQKLHIRSIPL-------GEHPRRICHQEQSRTFAICSLKNQSCA 424 (774)
Q Consensus 353 ~~~i~~~~~f~~~~~~~~l~~~-~~~~l~i~~l~~~~~~~~~~i~l-------~~tp~~i~y~~~~~~~~v~~~~~~~~~ 424 (774)
...+.+++ |+.. ....++.. .++.+++..+.... ....+.. ...+..++++|..+.+++.+...
T Consensus 165 ~~~v~~~~-~~~~-~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---- 236 (416)
T 2pm9_A 165 VDEVISLA-WNQS-LAHVFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGS---- 236 (416)
T ss_dssp SCCCCEEE-ECSS-CTTEEEEESSSSCEEEEETTTTE--EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECC----
T ss_pred CCCeeEEE-eCCC-CCcEEEEEcCCCCEEEEECCCCC--cceEEeccccccccCCceEEEEECCCCCCEEEEEECC----
Confidence 12233322 2110 01123333 36778888877643 3444444 45688899999875444444332
Q ss_pred CceeeeEEEEEECCCc-eEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEE
Q 004094 425 EESEMHFVRLLDDQTF-EFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIA 503 (774)
Q Consensus 425 ~~~~~~~l~l~d~~~~-~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~ 503 (774)
.....|+++|..+. +.+..+.......+.++. +......+++.|+. .|.|.+|++..++.....
T Consensus 237 --~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~---~s~~~~~~l~s~~~----------dg~v~~wd~~~~~~~~~~ 301 (416)
T 2pm9_A 237 --DNDPSILIWDLRNANTPLQTLNQGHQKGILSLD---WCHQDEHLLLSSGR----------DNTVLLWNPESAEQLSQF 301 (416)
T ss_dssp --SSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEE---ECSSCSSCEEEEES----------SSEEEEECSSSCCEEEEE
T ss_pred --CCCceEEEEeCCCCCCCcEEeecCccCceeEEE---eCCCCCCeEEEEeC----------CCCEEEeeCCCCccceee
Confidence 01126888888764 333322212334455554 44324567777762 489999998765432211
Q ss_pred EEeecCceeEecccc-C-eEEEEEC--CEEEEEEee
Q 004094 504 EKETKGAVYSLNAFN-G-KLLAAIN--QKIQLYKWM 535 (774)
Q Consensus 504 ~~~~~g~v~~i~~~~-~-~lv~~~g--~~l~v~~~~ 535 (774)
....++|++++-.. + .++++.+ +.|++|++.
T Consensus 302 -~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 302 -PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp -ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred -cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence 24578888887553 3 4555443 689998864
No 55
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.99 E-value=0.0089 Score=64.52 Aligned_cols=275 Identities=11% Similarity=0.142 Sum_probs=150.2
Q ss_pred CcEEEEEECC--CEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECC
Q 004094 175 YSVNVATANA--SQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 252 (774)
Q Consensus 175 ~~I~~a~~~~--~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~ 252 (774)
..|.+.+.++ ..++.+..++.+..+.+..+++...- ......|.|+++.+ ...+++.|.+ |++|++|++.
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~------~~~~l~sgs~-D~~i~iwd~~ 180 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDH------SGKLLASCSA-DMTIKLWDFQ 180 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECT------TSSEEEEEET-TSCCCEEETT
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcC------CCCEEEEEeC-CCeEEEEeCC
Confidence 3577777653 36666666788888787665433221 23456799999965 2467787877 9999999998
Q ss_pred CCCeeEEecCCC-ccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEE
Q 004094 253 DLNLITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFA 331 (774)
Q Consensus 253 ~~~~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~ 331 (774)
+.+.+.. +.. .....++.+.+ +..+|+.|..||.+..|++.. +.. .+...-...++....+.. +...++.
T Consensus 181 ~~~~~~~--~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~--~~~--~~~~~~h~~~v~~~~~~~-~g~~l~s 251 (410)
T 1vyh_C 181 GFECIRT--MHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQT--GYC--VKTFTGHREWVRMVRPNQ-DGTLIAS 251 (410)
T ss_dssp SSCEEEC--CCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTT--CCE--EEEEECCSSCEEEEEECT-TSSEEEE
T ss_pred CCceeEE--EcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCC--CcE--EEEEeCCCccEEEEEECC-CCCEEEE
Confidence 7665432 211 11233444432 346789999999999987653 221 111111223343333321 2223333
Q ss_pred ec-CCCeEEEecC-CcEEE-eeecccCceeeecccCC-----------------CCCCcEEE-E-eCCeEEEEEEcCCCC
Q 004094 332 AS-DRPTVIYSSN-KKLLY-SNVNLKEVSHMCPFNSA-----------------AFPDSLAI-A-KEGELTIGTIDDIQK 389 (774)
Q Consensus 332 ~~-~~p~~l~~~~-~~~~~-~~~~~~~i~~~~~f~~~-----------------~~~~~l~~-~-~~~~l~i~~l~~~~~ 389 (774)
++ +....++... +.... ..-....+.+++ |... ..+..+++ . .++.+++..+....
T Consensus 252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~- 329 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKECKAELREHRHVVECIS-WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM- 329 (410)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEE-ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-
T ss_pred EcCCCeEEEEECCCCceeeEecCCCceEEEEE-EcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc-
Confidence 33 3344444322 22111 111112232222 1110 00122333 3 36788888876543
Q ss_pred eEEEEEeC-CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCce
Q 004094 390 LHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468 (774)
Q Consensus 390 ~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~ 468 (774)
..+.+.- ...++.++++|..+.++.++.+ ..|++.|..+++.+..+.-. ...+.++. +.. ..+
T Consensus 330 -~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D----------~~i~vwd~~~~~~~~~~~~h-~~~v~~l~---~~~-~~~ 393 (410)
T 1vyh_C 330 -CLMTLVGHDNWVRGVLFHSGGKFILSCADD----------KTLRVWDYKNKRCMKTLNAH-EHFVTSLD---FHK-TAP 393 (410)
T ss_dssp -EEEEEECCSSCEEEEEECSSSSCEEEEETT----------TEEEEECCTTSCCCEEEECC-SSCEEEEE---ECS-SSS
T ss_pred -eEEEEECCCCcEEEEEEcCCCCEEEEEeCC----------CeEEEEECCCCceEEEEcCC-CCcEEEEE---EcC-CCC
Confidence 3334432 3346789999988877766544 37999999888777666532 34456654 332 345
Q ss_pred EEEEEeeeeCCCCCCCcceEEEEEEE
Q 004094 469 YYCVGTAYVLPEENEPTKGRILVFIV 494 (774)
Q Consensus 469 ~i~VGT~~~~~~e~~~~~Grl~v~~i 494 (774)
+++.|. ..|.|.+|++
T Consensus 394 ~l~sgs----------~D~~i~vW~~ 409 (410)
T 1vyh_C 394 YVVTGS----------VDQTVKVWEC 409 (410)
T ss_dssp CEEEEE----------TTSEEEEEC-
T ss_pred EEEEEe----------CCCcEEEEeC
Confidence 677665 2378888864
No 56
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=97.94 E-value=0.031 Score=58.72 Aligned_cols=296 Identities=14% Similarity=0.138 Sum_probs=157.2
Q ss_pred eeEEEEEeC----CCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCC-----CeEEEe--cC-CcE
Q 004094 279 ISYLLCALG----DGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDR-----PTVIYS--SN-KKL 346 (774)
Q Consensus 279 ~~~L~vgl~----~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~-----p~~l~~--~~-~~~ 346 (774)
..++++|+. ++.+..|.++..++.+...... -+..|..+. +. .+...+++.+.. ...++. .+ +.+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~-~s-pdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLI-PS-ADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEE-EC-TTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEE-EC-CCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 457888864 4679999999877776544333 344453332 22 234556666652 232332 22 444
Q ss_pred EEe-ee--cccCceeeecccCCCCCCcEEEEe--CCeEEEEEEcCCCCe--EEEEEe-CCC----------cccEEEEec
Q 004094 347 LYS-NV--NLKEVSHMCPFNSAAFPDSLAIAK--EGELTIGTIDDIQKL--HIRSIP-LGE----------HPRRICHQE 408 (774)
Q Consensus 347 ~~~-~~--~~~~i~~~~~f~~~~~~~~l~~~~--~~~l~i~~l~~~~~~--~~~~i~-l~~----------tp~~i~y~~ 408 (774)
... .. .......++. ..+.++.+. ++.+.+..+.....+ ....+. .+. .|+.++++|
T Consensus 90 ~~~~~~~~~~~~p~~~~~-----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp 164 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT-----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP 164 (361)
T ss_dssp EEEEEEECSSSCEEEEEE-----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred EEeeEeccCCCCcEEEEE-----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC
Confidence 221 11 1112222222 112344443 567888888654322 111111 111 236699999
Q ss_pred CCCEEEEEEeccCCCCCceeeeEEEEEEC--CCc-------eEE---EEEECCCCceEEEEEEEEEcCCCceEEEEEeee
Q 004094 409 QSRTFAICSLKNQSCAEESEMHFVRLLDD--QTF-------EFI---STYPLDTFEYGCSILSCSFSDDSNVYYCVGTAY 476 (774)
Q Consensus 409 ~~~~~~v~~~~~~~~~~~~~~~~l~l~d~--~~~-------~~i---~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~ 476 (774)
+.+.++++.... ..+.+++. .+. ... ....+..+..+.++ .+..+++ +++|+..
T Consensus 165 dg~~l~~~~~~~---------~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~spdg~-~l~v~~~- 230 (361)
T 3scy_A 165 DGKYLLADDLGT---------DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHL---IFNSDGK-FAYLINE- 230 (361)
T ss_dssp TSSEEEEEETTT---------TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEE---EECTTSS-EEEEEET-
T ss_pred CCCEEEEEeCCC---------CEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEE---EEcCCCC-EEEEEcC-
Confidence 988766655322 25666643 332 221 34566666666554 3555444 4444431
Q ss_pred eCCCCCCCcceEEEEEEEeCCeEEEEEEEeec----CceeEeccc-cCe-EEEEE-C--CEEEEEEeeecCCCchhhhhh
Q 004094 477 VLPEENEPTKGRILVFIVEDGKLQLIAEKETK----GAVYSLNAF-NGK-LLAAI-N--QKIQLYKWMLRDDGTRELQSE 547 (774)
Q Consensus 477 ~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~----g~v~~i~~~-~~~-lv~~~-g--~~l~v~~~~~~~~~~~~l~~~ 547 (774)
..|++.+|++..++++.+...... ..+.+++-- +|+ |+++. + +.|.+|+++.. .+..+....
T Consensus 231 --------~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-~g~~~~~~~ 301 (361)
T 3scy_A 231 --------IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-NGTLTKVGY 301 (361)
T ss_dssp --------TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-TCCEEEEEE
T ss_pred --------CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-CCcEEEeeE
Confidence 347899999998888766654321 123455432 454 65544 3 68999887521 232222211
Q ss_pred cccccceEEEEEEEeCCEEEEEec-cccEEEEEEEccCCeEEEEeccCCcceeEEEEEe
Q 004094 548 CGHHGHILALYVQTRGDFIVVGDL-MKSISLLIYKHEEGAIEERARDYNANWMSAVEIL 605 (774)
Q Consensus 548 ~~~~~~~~~~~l~~~~~~I~vgD~-~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l 605 (774)
......+..+.++-.++++++++. -..+.+++++.+.+++..+......-.++++.|+
T Consensus 302 ~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 302 QLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred ecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 111112223334445778999884 4678888888888888887655433456666665
No 57
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.92 E-value=0.0065 Score=66.04 Aligned_cols=274 Identities=13% Similarity=0.176 Sum_probs=145.9
Q ss_pred CceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEE
Q 004094 215 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNF 294 (774)
Q Consensus 215 ~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y 294 (774)
...|.|+++. ...++.|.. +|.|.+|++.+.+.+....-. .....++ .+ +..+|++|..||.+..|
T Consensus 133 ~~~v~~~~~d--------~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~h-~~~v~~l---~~-~~~~l~sg~~dg~i~vw 198 (435)
T 1p22_A 133 SKGVYCLQYD--------DQKIVSGLR-DNTIKIWDKNTLECKRILTGH-TGSVLCL---QY-DERVIITGSSDSTVRVW 198 (435)
T ss_dssp CCCEEEEECC--------SSEEEEEES-SSCEEEEESSSCCEEEEECCC-SSCEEEE---EC-CSSEEEEEETTSCEEEE
T ss_pred CCcEEEEEEC--------CCEEEEEeC-CCeEEEEeCCCCeEEEEEcCC-CCcEEEE---EE-CCCEEEEEcCCCeEEEE
Confidence 4557888772 467888888 999999999877665432111 1122233 23 35689999999999998
Q ss_pred EEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCeEEEecCCcEEEeeecccCceeeecccCCCCCCcEEEE
Q 004094 295 LLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIA 374 (774)
Q Consensus 295 ~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~~~~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~ 374 (774)
.+.. +... ........++.-..+ . ++.++..
T Consensus 199 d~~~--~~~~--~~~~~h~~~v~~l~~--~-------------------------------------------~~~l~s~ 229 (435)
T 1p22_A 199 DVNT--GEML--NTLIHHCEAVLHLRF--N-------------------------------------------NGMMVTC 229 (435)
T ss_dssp ESSS--CCEE--EEECCCCSCEEEEEC--C-------------------------------------------TTEEEEE
T ss_pred ECCC--CcEE--EEEcCCCCcEEEEEE--c-------------------------------------------CCEEEEe
Confidence 8653 2110 000000111110000 0 0111111
Q ss_pred -eCCeEEEEEEcCCCCeEEEEEeCC--CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCC
Q 004094 375 -KEGELTIGTIDDIQKLHIRSIPLG--EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF 451 (774)
Q Consensus 375 -~~~~l~i~~l~~~~~~~~~~i~l~--~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~ 451 (774)
.++.+.+..+.........+...+ ..+..+.+ +.+.+++++.+ ..++++|..+.+.+..+.-. .
T Consensus 230 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d----------g~i~vwd~~~~~~~~~~~~~-~ 296 (435)
T 1p22_A 230 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD----------RTIKVWNTSTCEFVRTLNGH-K 296 (435)
T ss_dssp ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT----------SEEEEEETTTCCEEEEEECC-S
T ss_pred eCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC----------CeEEEEECCcCcEEEEEcCC-C
Confidence 134444444443332222222221 23344555 33555555543 37999999998888777643 3
Q ss_pred ceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEE-CCEEE
Q 004094 452 EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAI-NQKIQ 530 (774)
Q Consensus 452 E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~-g~~l~ 530 (774)
..+.++. +. ..++++|+ ..|.|.+|++..++..... ....++|++++.-+.+|+++. ++.|+
T Consensus 297 ~~v~~~~---~~---~~~l~~g~----------~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~l~sg~~dg~i~ 359 (435)
T 1p22_A 297 RGIACLQ---YR---DRLVVSGS----------SDNTIRLWDIECGACLRVL-EGHEELVRCIRFDNKRIVSGAYDGKIK 359 (435)
T ss_dssp SCEEEEE---EE---TTEEEEEE----------TTSCEEEEETTTCCEEEEE-CCCSSCEEEEECCSSEEEEEETTSCEE
T ss_pred CcEEEEE---eC---CCEEEEEe----------CCCeEEEEECCCCCEEEEE-eCCcCcEEEEEecCCEEEEEeCCCcEE
Confidence 3455553 22 45788776 3488999998765432221 236789999987344455444 46899
Q ss_pred EEEeeecCCCch-----hhhhhcccccceEEEEEEEeCCEEEEEeccccEEEEEEEcc
Q 004094 531 LYKWMLRDDGTR-----ELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHE 583 (774)
Q Consensus 531 v~~~~~~~~~~~-----~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~ 583 (774)
+|++........ .+.....+.. .+.++...+++++.|..-..|.++.+...
T Consensus 360 vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 360 VWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQFDEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEECSSCEEECCSSSEEEEEC----
T ss_pred EEECCCCCCccccccchheeeccCCCC--CeEEEEeCCCEEEEEeCCCEEEEEECCCC
Confidence 988632110000 0111111111 23445567889999998888888766543
No 58
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.92 E-value=0.0037 Score=65.35 Aligned_cols=224 Identities=13% Similarity=0.110 Sum_probs=131.4
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCC---CEEEEEEeccCCCCCceeeeEEEEEECCCce-EEEEEECCCC
Q 004094 376 EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQS---RTFAICSLKNQSCAEESEMHFVRLLDDQTFE-FISTYPLDTF 451 (774)
Q Consensus 376 ~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~---~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~-~i~~~~~~~~ 451 (774)
++.+++..+............-...+..++++|.. +.+++++.+ ..++++|..+.+ .+..+. ...
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~-~~~ 111 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG----------GNLHIWNLEAPEMPVYSVK-GHK 111 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT----------SCEEEECTTSCSSCSEEEC-CCS
T ss_pred CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC----------CeEEEEeCCCCCccEEEEE-ecc
Confidence 57788888887654445555556678889999984 666655544 368889887665 444433 234
Q ss_pred ceEEEEEEEE---EcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe--EEEEEEE--eecCceeEecc---c--cC
Q 004094 452 EYGCSILSCS---FSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK--LQLIAEK--ETKGAVYSLNA---F--NG 519 (774)
Q Consensus 452 E~~~si~~~~---~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~k--l~~~~~~--~~~g~v~~i~~---~--~~ 519 (774)
..+.++.... +. ...++++.|. ..|.+.+|++..++ +..+... ....++++++. + ++
T Consensus 112 ~~v~~~~~~~~~~~s-~~~~~l~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (357)
T 3i2n_A 112 EIINAIDGIGGLGIG-EGAPEIVTGS----------RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE 180 (357)
T ss_dssp SCEEEEEEESGGGCC--CCCEEEEEE----------TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CC
T ss_pred cceEEEeeccccccC-CCccEEEEEe----------CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCC
Confidence 5566665331 22 2345777776 34789999887543 2222111 11337888772 2 34
Q ss_pred e-EEEEEC-CEEEEEEeeecCCCchhhhhhcccccceEEEEEEE---eCCEEEEEeccccEEEEEEEccC--CeEEEEec
Q 004094 520 K-LLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQT---RGDFIVVGDLMKSISLLIYKHEE--GAIEERAR 592 (774)
Q Consensus 520 ~-lv~~~g-~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~---~~~~I~vgD~~~Sv~~~~~~~~~--~~l~~~a~ 592 (774)
. |+++.. +.|++|++. .+ +..........+..+.... .++++++|..-..+.++...... ..+.....
T Consensus 181 ~~l~~~~~d~~i~i~d~~---~~--~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 255 (357)
T 3i2n_A 181 RVVCAGYDNGDIKLFDLR---NM--ALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSE 255 (357)
T ss_dssp CEEEEEETTSEEEEEETT---TT--EEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEE
T ss_pred CEEEEEccCCeEEEEECc---cC--ceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeecc
Confidence 4 554444 688887753 12 1211112222233333333 56899999988888887655422 22322222
Q ss_pred cCCcceeEEEEEeeCCe--EEEEccCCcEEEEeeCC
Q 004094 593 DYNANWMSAVEILDDDI--YLGAENNFNLFTVRKNS 626 (774)
Q Consensus 593 D~~~~~v~~~~~l~~~~--~l~~D~~gnl~~l~~~~ 626 (774)
..+...++++.+-.++. ++.+..+|.+.+++...
T Consensus 256 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 256 KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 23456777777776554 56788899999999864
No 59
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.92 E-value=0.0085 Score=62.71 Aligned_cols=282 Identities=10% Similarity=0.013 Sum_probs=149.7
Q ss_pred CCcEEEEEECC------CEEEEEEcCCeEEEEEEcCc-eEEEEE---eccCCceeEEEEeCCCCCCCCCcceEEEEEecC
Q 004094 174 GYSVNVATANA------SQVLLATGGGHLVYLEIGDG-ILTEVK---HAQLEYEISCLDINPIGENPSYSQIAAVGMWTD 243 (774)
Q Consensus 174 ~~~I~~a~~~~------~~lvv~~~~~~~~~~~~~~~-~l~~~~---~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~ 243 (774)
...|.+.+.++ ..++.+..++.+..+.+..+ .+..+. .......|+|+++.+... ....++++|.. +
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~l~~~~~-d 94 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSN--TSHPLLAVAGS-R 94 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTT--TCCEEEEEEET-T
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCC--CCCCEEEEecC-C
Confidence 35687777663 34555555677777787653 333332 223557799999865321 11457787777 9
Q ss_pred CEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceee---ecCCCCeEEEE
Q 004094 244 ISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV---SLGTQPITLRT 320 (774)
Q Consensus 244 ~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~---~lG~~pv~l~~ 320 (774)
|.|.+|++.+.+.+....-. .....++.+.+. +..+|+.|..||.+..|.+.. +... ... .-...++.-..
T Consensus 95 g~i~v~d~~~~~~~~~~~~~-~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~--~~~~--~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 95 GIIRIINPITMQCIKHYVGH-GNAINELKFHPR-DPNLLLSVSKDHALRLWNIQT--DTLV--AIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp CEEEEECTTTCCEEEEEESC-CSCEEEEEECSS-CTTEEEEEETTSCEEEEETTT--TEEE--EEECSTTSCSSCEEEEE
T ss_pred CEEEEEEchhceEeeeecCC-CCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeec--CeEE--EEecccccccCceeEEE
Confidence 99999999887665432211 123344444321 346789999999999998653 2111 111 11123333222
Q ss_pred EEeCCcceEEEec-CCCeEEEecCCc-EE--------Eee---------------------ecccCceeeecccCCCCCC
Q 004094 321 FSSKNTTHVFAAS-DRPTVIYSSNKK-LL--------YSN---------------------VNLKEVSHMCPFNSAAFPD 369 (774)
Q Consensus 321 ~~~~~~~~v~~~~-~~p~~l~~~~~~-~~--------~~~---------------------~~~~~i~~~~~f~~~~~~~ 369 (774)
+.. ....+++.+ +....++..+.. .. +.| .....+.+++ |+ ++
T Consensus 169 ~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~----~~ 242 (366)
T 3k26_A 169 YDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR-WL----GD 242 (366)
T ss_dssp ECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE-EE----TT
T ss_pred ECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE-Ec----CC
Confidence 321 223343333 333334432211 00 000 0111122211 11 23
Q ss_pred cEEEE-eCCeEEEEEEcCCCC------------eEEEEEeC-CCcccEEEEecC--CCEEEEEEeccCCCCCceeeeEEE
Q 004094 370 SLAIA-KEGELTIGTIDDIQK------------LHIRSIPL-GEHPRRICHQEQ--SRTFAICSLKNQSCAEESEMHFVR 433 (774)
Q Consensus 370 ~l~~~-~~~~l~i~~l~~~~~------------~~~~~i~l-~~tp~~i~y~~~--~~~~~v~~~~~~~~~~~~~~~~l~ 433 (774)
.++.. .++.+++..+..... -..+.++. ...+..++++++ .+.+++++.+ +.|+
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d----------g~i~ 312 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV----------GKLY 312 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTT----------SCEE
T ss_pred EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecC----------CcEE
Confidence 33333 368889988876532 22334433 234667888888 7766666543 3799
Q ss_pred EEECCCceE----EEEEECCC-CceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEE
Q 004094 434 LLDDQTFEF----ISTYPLDT-FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIV 494 (774)
Q Consensus 434 l~d~~~~~~----i~~~~~~~-~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i 494 (774)
++|..+.+. ...+.... ...+.+++ +.. ..++++.|+ ..|.|++|++
T Consensus 313 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~---~s~-~~~~l~s~~----------~dg~i~iwd~ 364 (366)
T 3k26_A 313 VWDLEVEDPHKAKCTTLTHHKCGAAIRQTS---FSR-DSSILIAVC----------DDASIWRWDR 364 (366)
T ss_dssp EEECCSSSGGGCEEEEECCTTCCSCEEEEE---ECT-TSSEEEEEE----------TTSEEEEEEC
T ss_pred EEECCCCCCccccceEEcccccCCceEEEE---eCC-CCCeEEEEe----------CCCEEEEEEe
Confidence 999877542 22333221 34556554 433 356777776 3489999986
No 60
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.0017 Score=68.27 Aligned_cols=161 Identities=6% Similarity=0.002 Sum_probs=96.0
Q ss_pred cccEEEEec--CCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeee
Q 004094 400 HPRRICHQE--QSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYV 477 (774)
Q Consensus 400 tp~~i~y~~--~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~ 477 (774)
.+..+.++| ..+.++.++.+ ..++++|..+.+.+..+.......+.++. +.. ...+++.|+
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~d----------g~i~~wd~~~~~~~~~~~~~~~~~i~~~~---~~p-dg~~lasg~--- 189 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNR----------GTIGFQSYEDDSQYIVHSAKSDVEYSSGV---LHK-DSLLLALYS--- 189 (343)
T ss_dssp CEEEEECCC---CCEEEEEETT----------CCEEEEESSSSCEEEEECCCSSCCCCEEE---ECT-TSCEEEEEC---
T ss_pred CEEEEEcCCCCCCCEEEEEeCC----------CcEEEEECCCCcEEEEEecCCCCceEEEE---ECC-CCCEEEEEc---
Confidence 355677777 66666656544 37999999888876555555555566654 333 356888886
Q ss_pred CCCCCCCcceEEEEEEEeCCeEE-EEEEEeecCceeEeccc-cC-eEEEEECCEEEEEEeeecCCCchhhhhhcccc---
Q 004094 478 LPEENEPTKGRILVFIVEDGKLQ-LIAEKETKGAVYSLNAF-NG-KLLAAINQKIQLYKWMLRDDGTRELQSECGHH--- 551 (774)
Q Consensus 478 ~~~e~~~~~Grl~v~~i~~~kl~-~~~~~~~~g~v~~i~~~-~~-~lv~~~g~~l~v~~~~~~~~~~~~l~~~~~~~--- 551 (774)
..|.|.+|++..++.. ......+.++|++++-- ++ +|+++....|++|++.. + +.+.....+.
T Consensus 190 -------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~---~-~~~~~~~~~~~~~ 258 (343)
T 3lrv_A 190 -------PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRK---D-VGTLAYPTYTIPE 258 (343)
T ss_dssp -------TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTS---S-TTCBSSCCCBC--
T ss_pred -------CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCC---C-Ccceeeccccccc
Confidence 3489999999865432 22222357899999854 34 46666667888877531 1 1111111110
Q ss_pred cce--EEEEEEEeCCEEEEEec-cccEEEEEEEccCCeEE
Q 004094 552 GHI--LALYVQTRGDFIVVGDL-MKSISLLIYKHEEGAIE 588 (774)
Q Consensus 552 ~~~--~~~~l~~~~~~I~vgD~-~~Sv~~~~~~~~~~~l~ 588 (774)
... ..++.+..+.++++|.. -..+.++.|+.......
T Consensus 259 ~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~ 298 (343)
T 3lrv_A 259 FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT 298 (343)
T ss_dssp ---CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE
T ss_pred ccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE
Confidence 111 12334445779999777 77888888865544443
No 61
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.91 E-value=0.00067 Score=73.08 Aligned_cols=266 Identities=11% Similarity=0.109 Sum_probs=143.3
Q ss_pred CCEEEEEECCCCCeeE--EecCCC-ccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCc--c-ccceeeecCCCCe
Q 004094 243 DISVRIFSLPDLNLIT--KEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGE--L-TDRKKVSLGTQPI 316 (774)
Q Consensus 243 ~~~i~i~~l~~~~~~~--~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~--l-~~~~~~~lG~~pv 316 (774)
+|.|.||++....... ...+.. .....++.+.+. +..+|+.|..||.+..|++...... + .......-...++
T Consensus 56 ~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~-~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v 134 (402)
T 2aq5_A 56 GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH-NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV 134 (402)
T ss_dssp SCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT-CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCE
T ss_pred CCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC-CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeE
Confidence 8999999986532110 001111 112234443321 3567899999999999988753210 0 1111112223344
Q ss_pred EEEEEEeCCcceEEEec-CCCeEEEecC-CcEEEeee----cccCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCCCC
Q 004094 317 TLRTFSSKNTTHVFAAS-DRPTVIYSSN-KKLLYSNV----NLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQK 389 (774)
Q Consensus 317 ~l~~~~~~~~~~v~~~~-~~p~~l~~~~-~~~~~~~~----~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~ 389 (774)
.-..+...+.+.++..+ +....++.-+ ++.. ..+ ....+.+++ |+. ..+.++... ++.+++..+....
T Consensus 135 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~-~~~--~~~~l~~~~~d~~i~iwd~~~~~- 209 (402)
T 2aq5_A 135 GIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV-LTLGPDVHPDTIYSVD-WSR--DGALICTSCRDKRVRVIEPRKGT- 209 (402)
T ss_dssp EEEEECSSBTTEEEEEETTSCEEEEETTTTEEE-EEECTTTCCSCEEEEE-ECT--TSSCEEEEETTSEEEEEETTTTE-
T ss_pred EEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc-EEEecCCCCCceEEEE-ECC--CCCEEEEEecCCcEEEEeCCCCc-
Confidence 43333322222343334 3333444333 3321 122 223343333 321 122344443 6788888876543
Q ss_pred eEEEEE-eC--CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceE-EEEEECCCCceEEEEEEEEEcCC
Q 004094 390 LHIRSI-PL--GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEF-ISTYPLDTFEYGCSILSCSFSDD 465 (774)
Q Consensus 390 ~~~~~i-~l--~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~-i~~~~~~~~E~~~si~~~~~~~~ 465 (774)
..+.+ .- +..+..++++++.+.++++.... ....|+++|..+++. +....+.....+.++. +..+
T Consensus 210 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~---~s~~ 278 (402)
T 2aq5_A 210 -VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM-------SERQVALWDTKHLEEPLSLQELDTSSGVLLPF---FDPD 278 (402)
T ss_dssp -EEEEEECSSCSSSCCEEEECSTTEEEEEEECTT-------CCEEEEEEETTBCSSCSEEEECCCCSSCEEEE---EETT
T ss_pred -eeeeeccCCCCCcceEEEEcCCCcEEEEeccCC-------CCceEEEEcCccccCCceEEeccCCCceeEEE---EcCC
Confidence 33444 22 23378999999876555553211 125899999877653 4455555555555543 4444
Q ss_pred CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe--EEEEEEEeecCceeEeccc-cCeEEEEECCEEEEEEee
Q 004094 466 SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK--LQLIAEKETKGAVYSLNAF-NGKLLAAINQKIQLYKWM 535 (774)
Q Consensus 466 ~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~k--l~~~~~~~~~g~v~~i~~~-~~~lv~~~g~~l~v~~~~ 535 (774)
+..+++.|. ..|.|.+|++..++ +..+......++|++++-. ++.++++.+..+++|++.
T Consensus 279 ~~~l~~~g~----------~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~ 341 (402)
T 2aq5_A 279 TNIVYLCGK----------GDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLH 341 (402)
T ss_dssp TTEEEEEET----------TCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEE
T ss_pred CCEEEEEEc----------CCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecceeEEEEEcC
Confidence 444444453 24899999999766 7777776678999999866 344555556677887764
No 62
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.0046 Score=65.22 Aligned_cols=245 Identities=13% Similarity=0.120 Sum_probs=139.2
Q ss_pred CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECC--CceEEEEEECCCCceEEEEEEEEEcCC-CceEEEEEee
Q 004094 399 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQ--TFEFISTYPLDTFEYGCSILSCSFSDD-SNVYYCVGTA 475 (774)
Q Consensus 399 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~--~~~~i~~~~~~~~E~~~si~~~~~~~~-~~~~i~VGT~ 475 (774)
..+..++++|+.+.++.++.+. .|+++|.. +++.+..+.- ....+.++. +..+ ...+++.|.
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg----------~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~---~~~~~~~~~l~s~~- 76 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDK----------TIKIFEVEGETHKLIDTLTG-HEGPVWRVD---WAHPKFGTILASCS- 76 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTS----------CEEEEEEETTEEEEEEEECC-CSSCEEEEE---ECCGGGCSEEEEEE-
T ss_pred ccEEEEEEcCCCCEEEEEECCC----------cEEEEecCCCcceeeeEecC-CCCcEEEEE---eCCCCCCCEEEEec-
Confidence 3567789999988777776442 67887765 4444443322 234455554 3222 256777776
Q ss_pred eeCCCCCCCcceEEEEEEEeCCeEEEEEEE-eecCceeEecccc---Ce-EEEE-ECCEEEEEEeeecCCCchhhhhhcc
Q 004094 476 YVLPEENEPTKGRILVFIVEDGKLQLIAEK-ETKGAVYSLNAFN---GK-LLAA-INQKIQLYKWMLRDDGTRELQSECG 549 (774)
Q Consensus 476 ~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~-~~~g~v~~i~~~~---~~-lv~~-~g~~l~v~~~~~~~~~~~~l~~~~~ 549 (774)
..|.|.+|++..++.+.+... ...++|++++-.. +. |+++ .+..|++|++... ..........
T Consensus 77 ---------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~ 145 (379)
T 3jrp_A 77 ---------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN--GTTSPIIIDA 145 (379)
T ss_dssp ---------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT--SCCCEEEEEC
T ss_pred ---------cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC--CceeeEEecC
Confidence 238999999998876555544 3678999988653 34 4443 3468899886421 1111111111
Q ss_pred cccceEEEEEEE---------------eCCEEEEEeccccEEEEEEEccCCeEEEEe-ccCCcceeEEEEEeeC---Ce-
Q 004094 550 HHGHILALYVQT---------------RGDFIVVGDLMKSISLLIYKHEEGAIEERA-RDYNANWMSAVEILDD---DI- 609 (774)
Q Consensus 550 ~~~~~~~~~l~~---------------~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a-~D~~~~~v~~~~~l~~---~~- 609 (774)
... .+.++.. .++++++|..-..+.++...........+. -..+...++++.+-.+ ..
T Consensus 146 ~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~ 223 (379)
T 3jrp_A 146 HAI--GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 223 (379)
T ss_dssp CTT--CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred CCC--ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCe
Confidence 111 2233333 367999999999988876655443333332 1234456777777655 44
Q ss_pred EEEEccCCcEEEEeeCCCCCCccccceeeeEEEEEcCcccceEEeeeeeecCCCCCCCCccEEEEEccccceEEEEe
Q 004094 610 YLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIAS 686 (774)
Q Consensus 610 ~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gsi~~i~~ 686 (774)
++.++.+|.+.++........ ..............|+++.- . .....++.++.+|.|...-.
T Consensus 224 l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~v~~~~~---s--------~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 224 LASVSQDRTCIIWTQDNEQGP----WKKTLLKEEKFPDVLWRASW---S--------LSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp EEEEETTSCEEEEEESSTTSC----CEEEESSSSCCSSCEEEEEE---C--------SSSCCEEEEESSSSEEEEEE
T ss_pred EEEEeCCCEEEEEeCCCCCcc----ceeeeeccccCCCcEEEEEE---c--------CCCCEEEEecCCCcEEEEeC
Confidence 667889999999998753211 01111111113334444332 1 12345777778888875543
No 63
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.89 E-value=0.011 Score=63.62 Aligned_cols=274 Identities=9% Similarity=0.075 Sum_probs=145.1
Q ss_pred CCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEE
Q 004094 214 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLN 293 (774)
Q Consensus 214 l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~ 293 (774)
....|+|+++.+. ..+++.|.. |+.|.||++.+.+......-- .....++.+. .+..+|+.|..||.+..
T Consensus 107 h~~~V~~~~~~p~------~~~l~s~s~-Dg~i~vwd~~~~~~~~~l~~h-~~~V~~v~~~--~~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 107 HRSPVTRVIFHPV------FSVMVSASE-DATIKVWDYETGDFERTLKGH-TDSVQDISFD--HSGKLLASCSADMTIKL 176 (410)
T ss_dssp CSSCEEEEEECSS------SSEEEEEES-SSCEEEEETTTCCCCEEECCC-SSCEEEEEEC--TTSSEEEEEETTSCCCE
T ss_pred cCCcEEEEEEcCC------CCEEEEEeC-CCeEEEEECCCCcEEEEEecc-CCcEEEEEEc--CCCCEEEEEeCCCeEEE
Confidence 4567999999752 467777777 999999999876554321111 1122344433 24567899999999999
Q ss_pred EEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCeE-EEecC-Cc-EEEeeecccCceeeecccCCCCCCc
Q 004094 294 FLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTV-IYSSN-KK-LLYSNVNLKEVSHMCPFNSAAFPDS 370 (774)
Q Consensus 294 y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~-l~~~~-~~-~~~~~~~~~~i~~~~~f~~~~~~~~ 370 (774)
|.+.. +.. .+...-...+|.-..+.. +...++..+....+ ++.-+ +. +....-....+.+++ ++. ....
T Consensus 177 wd~~~--~~~--~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~-~~~--~g~~ 248 (410)
T 1vyh_C 177 WDFQG--FEC--IRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR-PNQ--DGTL 248 (410)
T ss_dssp EETTS--SCE--EECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE-ECT--TSSE
T ss_pred EeCCC--Cce--eEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEE-ECC--CCCE
Confidence 87643 211 111111123333223321 22334444433333 33322 22 211111112333333 221 1122
Q ss_pred EEEE-eCCeEEEEEEcCCCCeEEEEEe-CCCcccEEEEecCC-------------------CEEEEEEeccCCCCCceee
Q 004094 371 LAIA-KEGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQS-------------------RTFAICSLKNQSCAEESEM 429 (774)
Q Consensus 371 l~~~-~~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~-------------------~~~~v~~~~~~~~~~~~~~ 429 (774)
++.. .++.+++..+..... ...+. -...+..+.++|.. ..+++.++..
T Consensus 249 l~s~s~D~~v~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D--------- 317 (410)
T 1vyh_C 249 IASCSNDQTVRVWVVATKEC--KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD--------- 317 (410)
T ss_dssp EEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT---------
T ss_pred EEEEcCCCeEEEEECCCCce--eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC---------
Confidence 3333 367888887765421 22222 22345667777752 2233333321
Q ss_pred eEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeE-EEEEEEeec
Q 004094 430 HFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKL-QLIAEKETK 508 (774)
Q Consensus 430 ~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl-~~~~~~~~~ 508 (774)
..|+++|..+.+.+..+.- ....+.++. +.. ...+++.|. ..|.|++|++..+++ ..+ ..+.
T Consensus 318 ~~i~iwd~~~~~~~~~~~~-h~~~v~~v~---~~~-~g~~l~s~s----------~D~~i~vwd~~~~~~~~~~--~~h~ 380 (410)
T 1vyh_C 318 KTIKMWDVSTGMCLMTLVG-HDNWVRGVL---FHS-GGKFILSCA----------DDKTLRVWDYKNKRCMKTL--NAHE 380 (410)
T ss_dssp SEEEEEETTTTEEEEEEEC-CSSCEEEEE---ECS-SSSCEEEEE----------TTTEEEEECCTTSCCCEEE--ECCS
T ss_pred CeEEEEECCCCceEEEEEC-CCCcEEEEE---EcC-CCCEEEEEe----------CCCeEEEEECCCCceEEEE--cCCC
Confidence 3799999988887776653 233455553 443 345666665 238999999875542 222 2457
Q ss_pred CceeEecccc-C-eEEEEE-CCEEEEEE
Q 004094 509 GAVYSLNAFN-G-KLLAAI-NQKIQLYK 533 (774)
Q Consensus 509 g~v~~i~~~~-~-~lv~~~-g~~l~v~~ 533 (774)
++|++++--. + +|+.+. .+.|++|+
T Consensus 381 ~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 381 HFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp SCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 8899988653 3 455433 46788865
No 64
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.88 E-value=0.031 Score=59.31 Aligned_cols=262 Identities=13% Similarity=0.134 Sum_probs=148.3
Q ss_pred CcEEEEecCCCceeeeEeCCCCCcEEEEEEC--CCEEEEEE-cCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCC
Q 004094 153 GSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLAT-GGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGEN 229 (774)
Q Consensus 153 ~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~-~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~ 229 (774)
+.|++++.++++.+..+.. +..+.+.+.+ +..++++. .++.+..+.+..+++... ......+.++++.+
T Consensus 12 ~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~v~~~~~sp---- 83 (391)
T 1l0q_A 12 DNISVIDVTSNKVTATIPV--GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT--VPAGSSPQGVAVSP---- 83 (391)
T ss_dssp TEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE--EECSSSEEEEEECT----
T ss_pred CEEEEEECCCCeEEEEeec--CCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE--EECCCCccceEECC----
Confidence 4577777766555555443 2346676765 34565554 467787777665554332 34445889999965
Q ss_pred CCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEE-EEEeCCCcEEEEEEecCCCcccccee
Q 004094 230 PSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYL-LCALGDGHLLNFLLNMKTGELTDRKK 308 (774)
Q Consensus 230 ~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L-~vgl~~G~l~~y~~~~~~~~l~~~~~ 308 (774)
....++++...++.|.+|++.+.+.+...... ..|.++.+.+ +..+| +.+..+|.+..|.+. +++. .+.
T Consensus 84 --dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~--dg~~l~~~~~~~~~v~~~d~~--~~~~--~~~ 153 (391)
T 1l0q_A 84 --DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG--KSPLGLALSP--DGKKLYVTNNGDKTVSVINTV--TKAV--INT 153 (391)
T ss_dssp --TSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECT--TSSEEEEEETTTTEEEEEETT--TTEE--EEE
T ss_pred --CCCEEEEEECCCCEEEEEECCCCeEEEEEeCC--CCcceEEECC--CCCEEEEEeCCCCEEEEEECC--CCcE--EEE
Confidence 24567676665799999999876665433222 2455555443 23445 567779988887654 2322 222
Q ss_pred eecCCCCeEEEEEEeCCcceEEEecCC-C-eEEEecC-CcE-EEeeecccCceeeecccCCCCCCcEEEEe----CCeEE
Q 004094 309 VSLGTQPITLRTFSSKNTTHVFAASDR-P-TVIYSSN-KKL-LYSNVNLKEVSHMCPFNSAAFPDSLAIAK----EGELT 380 (774)
Q Consensus 309 ~~lG~~pv~l~~~~~~~~~~v~~~~~~-p-~~l~~~~-~~~-~~~~~~~~~i~~~~~f~~~~~~~~l~~~~----~~~l~ 380 (774)
...+..|..+ .+. .+...+++++.. - ..++..+ ++. ...+. ...+.++ .|+. ..+.++... ++.+.
T Consensus 154 ~~~~~~~~~~-~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~-~~~~--~g~~l~~~~~~~~~~~v~ 227 (391)
T 1l0q_A 154 VSVGRSPKGI-AVT-PDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGI-AVNP--EGTKAYVTNVDKYFNTVS 227 (391)
T ss_dssp EECCSSEEEE-EEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEE-EECT--TSSEEEEEEECSSCCEEE
T ss_pred EecCCCcceE-EEC-CCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccce-EECC--CCCEEEEEecCcCCCcEE
Confidence 3344444322 222 233455555432 2 3333322 222 11111 1122222 2221 112344333 46777
Q ss_pred EEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC
Q 004094 381 IGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 449 (774)
Q Consensus 381 i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~ 449 (774)
+..+... -..+.++.+..|..++++|+.+.+++.+... ..++++|..+++.+..+...
T Consensus 228 ~~d~~~~--~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d---------~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 228 MIDTGTN--KITARIPVGPDPAGIAVTPDGKKVYVALSFX---------NTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp EEETTTT--EEEEEEECCSSEEEEEECTTSSEEEEEETTT---------TEEEEEETTTTEEEEEEECS
T ss_pred EEECCCC--eEEEEEecCCCccEEEEccCCCEEEEEcCCC---------CEEEEEECCCCcEEEEEECC
Confidence 7666543 3467788888899999999988776666432 47999999988887766543
No 65
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=97.87 E-value=0.0038 Score=67.82 Aligned_cols=78 Identities=15% Similarity=0.069 Sum_probs=49.6
Q ss_pred CCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCC-----------eeEEecCCC-c----------cCceeE
Q 004094 214 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLN-----------LITKEHLGG-E----------IIPRSV 271 (774)
Q Consensus 214 l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~-----------~~~~~~l~~-~----------~~p~si 271 (774)
....|+|+++++ ...+++.|.. +|.|.||++.+.+ +.....--. + ....++
T Consensus 27 ~~~~V~~v~~s~------~g~~la~g~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l 99 (447)
T 3dw8_B 27 EADIISTVEFNH------SGELLATGDK-GGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI 99 (447)
T ss_dssp GGGSEEEEEECS------SSSEEEEEET-TSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEE
T ss_pred ccCcEEEEEECC------CCCEEEEEcC-CCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEE
Confidence 357899999975 2578888888 9999999987644 111110000 0 123344
Q ss_pred EeeeecCeeEEEEEeCCCcEEEEEEec
Q 004094 272 LLCAFEGISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 272 ~~~~~~~~~~L~vgl~~G~l~~y~~~~ 298 (774)
.+.+-++...|+.+..||.+..|.+..
T Consensus 100 ~~~~~~~~~~l~s~s~d~~i~iw~~~~ 126 (447)
T 3dw8_B 100 RWLPQKNAAQFLLSTNDKTIKLWKISE 126 (447)
T ss_dssp EECCCCSSSEEEEEECSSCEEEEEEEE
T ss_pred EEcCCCCcceEEEeCCCCeEEEEeccc
Confidence 443322226799999999999999864
No 66
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.87 E-value=0.031 Score=57.90 Aligned_cols=270 Identities=10% Similarity=0.040 Sum_probs=147.2
Q ss_pred CCcEEEEEEC--CCEEEEEEcCCeEEEEEEcCce--EEEEEeccCCceeEEEEeCCCCCCCCCcc-eEEEEEecCCEEEE
Q 004094 174 GYSVNVATAN--ASQVLLATGGGHLVYLEIGDGI--LTEVKHAQLEYEISCLDINPIGENPSYSQ-IAAVGMWTDISVRI 248 (774)
Q Consensus 174 ~~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~--l~~~~~~~l~~~is~l~~~~~~~~~~~~~-~~~vg~~~~~~i~i 248 (774)
...|.+.+.+ +..++.+..++.+..+.+..+. ............|+|+++.+ ... +++.|.. +|.|.+
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~l~~~~~-dg~i~~ 83 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID------NTDLQIYVGTV-QGEILK 83 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE------SSSEEEEEEET-TSCEEE
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC------CCCcEEEEEcC-CCeEEE
Confidence 3468777754 4577777777888888887633 22222235677899999865 256 7888887 999999
Q ss_pred EEC-CCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCc-----cccceeeecCCCCeEEEEEE
Q 004094 249 FSL-PDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGE-----LTDRKKVSLGTQPITLRTFS 322 (774)
Q Consensus 249 ~~l-~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~-----l~~~~~~~lG~~pv~l~~~~ 322 (774)
|++ ...+..............++.+.+ ...|+.+..||.+..|.+....+. ....+... ...++ ..+.
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v--~~~~ 157 (342)
T 1yfq_A 84 VDLIGSPSFQALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKI--FTMD 157 (342)
T ss_dssp ECSSSSSSEEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCE--EEEE
T ss_pred EEeccCCceEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCce--EEEE
Confidence 999 765542211100112334555444 467889999999999876531000 00001111 11222 2222
Q ss_pred eCCcceEEEecCC-CeEEEecCC--c--EEEeeec-ccCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCC-----CCe
Q 004094 323 SKNTTHVFAASDR-PTVIYSSNK--K--LLYSNVN-LKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDI-----QKL 390 (774)
Q Consensus 323 ~~~~~~v~~~~~~-p~~l~~~~~--~--~~~~~~~-~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~-----~~~ 390 (774)
..+. .+++.+.. ...++..+. . ....... ...+.+++ |+. ...+.++... ++.+.+..++.. .+
T Consensus 158 ~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~-~~~-~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~- 233 (342)
T 1yfq_A 158 TNSS-RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVA-LLP-KEQEGYACSSIDGRVAVEFFDDQGDDYNSS- 233 (342)
T ss_dssp ECSS-EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEE-ECS-GGGCEEEEEETTSEEEEEECCTTCCSTTCT-
T ss_pred ecCC-cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEE-ECC-CCCCEEEEEecCCcEEEEEEcCCCcccccc-
Confidence 2222 34444433 333443322 1 1111111 12333333 211 0112344433 678888888765 11
Q ss_pred EEEEEeCC----------CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEE
Q 004094 391 HIRSIPLG----------EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSC 460 (774)
Q Consensus 391 ~~~~i~l~----------~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~ 460 (774)
....+... ..+..++++|..+.++.++.+ ..|+++|..+++.+..+.-.....+.++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~~h~~~v~~~~-- 301 (342)
T 1yfq_A 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD----------GIISCWNLQTRKKIKNFAKFNEDSVVKIA-- 301 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT----------SCEEEEETTTTEEEEECCCCSSSEEEEEE--
T ss_pred cceeeecccccccccccceeEEEEEEcCCCCEEEEecCC----------ceEEEEcCccHhHhhhhhcccCCCceEec--
Confidence 12222221 267789999988877766644 37999999988887664332145566665
Q ss_pred EEcCCCceEEEEEeee
Q 004094 461 SFSDDSNVYYCVGTAY 476 (774)
Q Consensus 461 ~~~~~~~~~i~VGT~~ 476 (774)
. ...+++.|+..
T Consensus 302 --~--~~~~l~s~s~D 313 (342)
T 1yfq_A 302 --C--SDNILCLATSD 313 (342)
T ss_dssp --E--CSSEEEEEEEC
T ss_pred --C--CCCeEEEEecC
Confidence 2 34577777654
No 67
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.81 E-value=0.045 Score=56.68 Aligned_cols=274 Identities=13% Similarity=0.096 Sum_probs=147.4
Q ss_pred cEEEEEEC------CCEEEEEEcCCeEEEEEEcCceEEEEE-eccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEE
Q 004094 176 SVNVATAN------ASQVLLATGGGHLVYLEIGDGILTEVK-HAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRI 248 (774)
Q Consensus 176 ~I~~a~~~------~~~lvv~~~~~~~~~~~~~~~~l~~~~-~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i 248 (774)
.|.+.+.. +..++.+..++.+..+.+..+++.... .......|.|+++.+ ....++.|.+ |+.|++
T Consensus 34 ~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~------~~~~l~s~s~-D~~i~l 106 (321)
T 3ow8_A 34 AIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH------TLPIAASSSL-DAHIRL 106 (321)
T ss_dssp CEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS------SSSEEEEEET-TSEEEE
T ss_pred cEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC------CCCEEEEEeC-CCcEEE
Confidence 46666543 235555556777777777655443322 223456789999864 2456676767 999999
Q ss_pred EECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcce
Q 004094 249 FSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTH 328 (774)
Q Consensus 249 ~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~ 328 (774)
|++.+.+.+....... ....++.+. .+..+|+.|..+|.+..|.+.... .. ........++.-..+.. +...
T Consensus 107 Wd~~~~~~~~~~~~~~-~~~~~~~~s--pdg~~l~~g~~dg~v~i~~~~~~~--~~--~~~~~~~~~v~~~~~sp-dg~~ 178 (321)
T 3ow8_A 107 WDLENGKQIKSIDAGP-VDAWTLAFS--PDSQYLATGTHVGKVNIFGVESGK--KE--YSLDTRGKFILSIAYSP-DGKY 178 (321)
T ss_dssp EETTTTEEEEEEECCT-TCCCCEEEC--TTSSEEEEECTTSEEEEEETTTCS--EE--EEEECSSSCEEEEEECT-TSSE
T ss_pred EECCCCCEEEEEeCCC-ccEEEEEEC--CCCCEEEEEcCCCcEEEEEcCCCc--ee--EEecCCCceEEEEEECC-CCCE
Confidence 9998766544322211 122233333 245689999999999998765421 11 11111122332222321 2233
Q ss_pred EEEec-CCCeEEEecC-CcE-EEeeecccCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCCCCeEEEEEeC-CCcccE
Q 004094 329 VFAAS-DRPTVIYSSN-KKL-LYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPL-GEHPRR 403 (774)
Q Consensus 329 v~~~~-~~p~~l~~~~-~~~-~~~~~~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l-~~tp~~ 403 (774)
+...+ +....++... ++. ....-...++.+++ |+. ....++... ++.+++..+..... .+.+.- ...+..
T Consensus 179 lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~-~sp--d~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~v~~ 253 (321)
T 3ow8_A 179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT-FSP--DSQLLVTASDDGYIKIYDVQHANL--AGTLSGHASWVLN 253 (321)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEE-ECT--TSCEEEEECTTSCEEEEETTTCCE--EEEECCCSSCEEE
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEE-EcC--CCCEEEEEcCCCeEEEEECCCcce--eEEEcCCCCceEE
Confidence 33333 3334444333 332 11111123343332 321 111233333 57788888765432 233332 234678
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCC
Q 004094 404 ICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENE 483 (774)
Q Consensus 404 i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~ 483 (774)
++++|+.+.++.++.+. .|++.|..+.+.+.++.- ....+.++. +..+ ..+|+.|.
T Consensus 254 ~~~sp~~~~l~s~s~D~----------~v~iwd~~~~~~~~~~~~-h~~~v~~v~---~s~~-g~~l~s~~--------- 309 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDK----------SVKVWDVGTRTCVHTFFD-HQDQVWGVK---YNGN-GSKIVSVG--------- 309 (321)
T ss_dssp EEECTTSSEEEEEETTS----------CEEEEETTTTEEEEEECC-CSSCEEEEE---ECTT-SSEEEEEE---------
T ss_pred EEECCCCCEEEEEeCCC----------cEEEEeCCCCEEEEEEcC-CCCcEEEEE---ECCC-CCEEEEEe---------
Confidence 99999988777666543 799999998888776542 334555554 4433 44566554
Q ss_pred CcceEEEEEEE
Q 004094 484 PTKGRILVFIV 494 (774)
Q Consensus 484 ~~~Grl~v~~i 494 (774)
..|.|.+|++
T Consensus 310 -~d~~i~vwd~ 319 (321)
T 3ow8_A 310 -DDQEIHIYDC 319 (321)
T ss_dssp -TTCCEEEEEC
T ss_pred -CCCeEEEEeC
Confidence 2377888864
No 68
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=97.81 E-value=0.047 Score=56.89 Aligned_cols=278 Identities=13% Similarity=0.116 Sum_probs=147.9
Q ss_pred eEEEEEeC----CCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCC----CeEEEe-cCCcEEEee
Q 004094 280 SYLLCALG----DGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDR----PTVIYS-SNKKLLYSN 350 (774)
Q Consensus 280 ~~L~vgl~----~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~----p~~l~~-~~~~~~~~~ 350 (774)
.++++|+. ++.+..|.+|..++.+.......-+..|..+. +.- +.. +++.+.. ...++. ..+.++...
T Consensus 3 ~~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a-~sp-dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~ 79 (347)
T 3hfq_A 3 ERILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLA-LSA-KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN 79 (347)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEE-ECT-TCE-EEEEEEETTEEEEEEEEEETTEEEEEE
T ss_pred cEEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEE-Ecc-CCe-EEEEEecCCCceEEEEEecCCcEEEee
Confidence 46788853 45688999998777665433333344554332 221 233 6666542 222332 233332211
Q ss_pred e---cccCceeeecccCCCCCC--cEEEEe--CCeEEEEEEcCCCCe-EEEEEeCCC----------cccEEEEecCCCE
Q 004094 351 V---NLKEVSHMCPFNSAAFPD--SLAIAK--EGELTIGTIDDIQKL-HIRSIPLGE----------HPRRICHQEQSRT 412 (774)
Q Consensus 351 ~---~~~~i~~~~~f~~~~~~~--~l~~~~--~~~l~i~~l~~~~~~-~~~~i~l~~----------tp~~i~y~~~~~~ 412 (774)
. ....+..++ |+ |+ .++.+. ++.+.+..++....+ ....++... .|..++++|+.+
T Consensus 80 ~~~~~~~~p~~~a-~s----pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~- 153 (347)
T 3hfq_A 80 TVVAPGTPPAYVA-VD----EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR- 153 (347)
T ss_dssp EEEEESCCCSEEE-EE----TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-
T ss_pred eeecCCCCCEEEE-EC----CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-
Confidence 1 111122221 21 23 244444 477888888654332 334444322 366799999988
Q ss_pred EEEEEeccCCCCCceeeeEEEEEECC-Cc--eEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEE
Q 004094 413 FAICSLKNQSCAEESEMHFVRLLDDQ-TF--EFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRI 489 (774)
Q Consensus 413 ~~v~~~~~~~~~~~~~~~~l~l~d~~-~~--~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl 489 (774)
++++.... ..+.+++.. +. ..+..+....+..+..+ .+..+++ ++++... ..|++
T Consensus 154 l~v~~~~~---------~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~---~~spdg~-~l~v~~~---------~~~~v 211 (347)
T 3hfq_A 154 LAVIDLGS---------DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHL---VFSPDGQ-YAFLAGE---------LSSQI 211 (347)
T ss_dssp EEEEETTT---------TEEEEEEECTTSCEEEEEEEECCTTCCEEEE---EECTTSS-EEEEEET---------TTTEE
T ss_pred EEEEeCCC---------CEEEEEEECCCCcEEEeeeEEcCCCCCCceE---EECCCCC-EEEEEeC---------CCCEE
Confidence 44443221 267777765 33 33455566666666554 3555444 4444321 34789
Q ss_pred EEEEEeC--CeEEEEEEEee-c------CceeEeccc-cCe-EEEEE--CCEEEEEEeeecCCCchhhhhhccccc---c
Q 004094 490 LVFIVED--GKLQLIAEKET-K------GAVYSLNAF-NGK-LLAAI--NQKIQLYKWMLRDDGTRELQSECGHHG---H 553 (774)
Q Consensus 490 ~v~~i~~--~kl~~~~~~~~-~------g~v~~i~~~-~~~-lv~~~--g~~l~v~~~~~~~~~~~~l~~~~~~~~---~ 553 (774)
.+|++.. ++++.+..... + ..+.+++-- +|+ |+++. ++.|.+|+++. .+..+. ...... .
T Consensus 212 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~--~g~~~~--~~~~~~~~~~ 287 (347)
T 3hfq_A 212 ASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA--DGHLTL--IQQISTEGDF 287 (347)
T ss_dssp EEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG--GGCEEE--EEEEECSSSC
T ss_pred EEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC--CCcEEE--eEEEecCCCC
Confidence 9999884 67766554432 2 235555533 454 65543 47899988742 222122 111111 1
Q ss_pred eEEEEEEEeCCEEEEEecc-ccEEEEEEEccCCeEEEEec
Q 004094 554 ILALYVQTRGDFIVVGDLM-KSISLLIYKHEEGAIEERAR 592 (774)
Q Consensus 554 ~~~~~l~~~~~~I~vgD~~-~Sv~~~~~~~~~~~l~~~a~ 592 (774)
+..+.++-.++++++++.. ..+.+++++.+.+++..+..
T Consensus 288 ~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 288 PRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp CCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred cCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEeccc
Confidence 2233444457789998876 67888887877788877764
No 69
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=97.81 E-value=0.042 Score=61.71 Aligned_cols=273 Identities=12% Similarity=0.111 Sum_probs=156.6
Q ss_pred ceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCC
Q 004094 234 QIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGT 313 (774)
Q Consensus 234 ~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~ 313 (774)
..++|..+.+++|.+|+..+.+++...... ..|+.+.+.+ +..+|+++..+|.+..|.++..++. ..+....|.
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g--~~~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~t~~--~~~~i~~g~ 222 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTG--YAVHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPT--KVAEIKIGI 222 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECS--TTEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCE--EEEEEECCS
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecC--cccceEEECC--CCCEEEEECCCCeEEEEECcCCCCc--EEEEEecCC
Confidence 455666676999999999887776554433 2366665543 4568999999999999887423332 233455676
Q ss_pred CCeEEEEEEe--C-CcceEEEecC-CCeE-EEecC-Cc-EEEeeeccc-----------CceeeecccCCCCCCcEEEEe
Q 004094 314 QPITLRTFSS--K-NTTHVFAASD-RPTV-IYSSN-KK-LLYSNVNLK-----------EVSHMCPFNSAAFPDSLAIAK 375 (774)
Q Consensus 314 ~pv~l~~~~~--~-~~~~v~~~~~-~p~~-l~~~~-~~-~~~~~~~~~-----------~i~~~~~f~~~~~~~~l~~~~ 375 (774)
.|..+. |.- + +...+++.+. .+.+ ++... .+ +...+.... .+.++. +. .....+++..
T Consensus 223 ~p~~va-~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~-~s--~~~~~~~vs~ 298 (543)
T 1nir_A 223 EARSVE-SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII-AS--HEHPEFIVNV 298 (543)
T ss_dssp EEEEEE-ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE-EC--SSSSEEEEEE
T ss_pred CcceEE-eCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEE-EC--CCCCEEEEEE
Confidence 665442 331 0 3445666653 2333 33222 22 222222110 111111 11 1112233332
Q ss_pred --CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCce
Q 004094 376 --EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEY 453 (774)
Q Consensus 376 --~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~ 453 (774)
.+.+.+....+...+.+..++.+..|+.++++|+.+.++++.... ..|.++|..+.+.+..++....-+
T Consensus 299 ~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~---------~~v~v~D~~tg~l~~~i~~g~~ph 369 (543)
T 1nir_A 299 KETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNS---------NKVAVIDSKDRRLSALVDVGKTPH 369 (543)
T ss_dssp TTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGG---------TEEEEEETTTTEEEEEEECSSSBC
T ss_pred CCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCC---------CeEEEEECCCCeEEEeeccCCCCC
Confidence 567887777766556677888899999999999988777666432 379999999999888777532211
Q ss_pred EEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC-----eEEEEEEEeec-CceeEeccc-cC-eEEEEE
Q 004094 454 GCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG-----KLQLIAEKETK-GAVYSLNAF-NG-KLLAAI 525 (774)
Q Consensus 454 ~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~-----kl~~~~~~~~~-g~v~~i~~~-~~-~lv~~~ 525 (774)
.-....+ +..+...+++.+. . ..+.|.+|++... .++.+...+.. +.+..|..- ++ +|+++.
T Consensus 370 ~g~g~~~-~~p~~g~~~~s~~-~--------~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 370 PGRGANF-VHPKYGPVWSTSH-L--------GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp CTTCEEE-EETTTEEEEEEEB-S--------SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred CCCCccc-CCCCCccEEEecc-C--------CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 1111122 2222344444332 1 2368999998741 25566665554 455666544 44 466665
Q ss_pred --------CCEEEEEEee
Q 004094 526 --------NQKIQLYKWM 535 (774)
Q Consensus 526 --------g~~l~v~~~~ 535 (774)
.++|.+|+.+
T Consensus 440 ~~~~~~~~~~~v~v~d~~ 457 (543)
T 1nir_A 440 TFNPDARISQSVAVFDLK 457 (543)
T ss_dssp TTCSSHHHHTCEEEEETT
T ss_pred CCCCCcccCceEEEEECC
Confidence 5699998864
No 70
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.011 Score=64.13 Aligned_cols=222 Identities=16% Similarity=0.157 Sum_probs=127.2
Q ss_pred CCeEEEEEEcC---CCCe-EEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECC---Cc--------
Q 004094 376 EGELTIGTIDD---IQKL-HIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQ---TF-------- 440 (774)
Q Consensus 376 ~~~l~i~~l~~---~~~~-~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~---~~-------- 440 (774)
++.+++..+.. ...+ ......-...+..++++|..+.++.++.+. .|++.|.. +.
T Consensus 85 dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg----------~i~vwd~~~~~~~~~~~~~~~ 154 (437)
T 3gre_A 85 QGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDG----------QIIVLKVNHYQQESEVKFLNC 154 (437)
T ss_dssp TSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTS----------EEEEEEEEEEEETTEEEEEEE
T ss_pred CceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCC----------EEEEEEeccccCCceeecccc
Confidence 67888888865 2211 123334566788899999888777776543 56666542 11
Q ss_pred eEEEEEECC---CCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEe-ecCceeEecc
Q 004094 441 EFISTYPLD---TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE-TKGAVYSLNA 516 (774)
Q Consensus 441 ~~i~~~~~~---~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~-~~g~v~~i~~ 516 (774)
..+..+.+. ..+.+.++... ......+++.|+ ..|.|++|++..++........ ..++|++++-
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~ 222 (437)
T 3gre_A 155 ECIRKINLKNFGKNEYAVRMRAF--VNEEKSLLVALT----------NLSRVIIFDIRTLERLQIIENSPRHGAVSSICI 222 (437)
T ss_dssp EEEEEEEGGGGSSCCCEEEEEEE--ECSSCEEEEEEE----------TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEE
T ss_pred ceeEEEEccCcccccCceEEEEE--EcCCCCEEEEEe----------CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEE
Confidence 234455555 35556665433 223467888887 3489999999766544333322 6789999985
Q ss_pred c-cCe-EEEEE-CCEEEEEEeeecCCCchhhhhhcccccceEEEEEEEe------CCEEEEEeccccEEEEEEEccCCeE
Q 004094 517 F-NGK-LLAAI-NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTR------GDFIVVGDLMKSISLLIYKHEEGAI 587 (774)
Q Consensus 517 ~-~~~-lv~~~-g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~------~~~I~vgD~~~Sv~~~~~~~~~~~l 587 (774)
- ++. |+++. .+.|++|++. . .+............+.++... +.+++.|..-..|.+ |+....+.
T Consensus 223 s~~~~~l~s~~~dg~i~iwd~~---~--~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i--wd~~~~~~ 295 (437)
T 3gre_A 223 DEECCVLILGTTRGIIDIWDIR---F--NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI--WNFVKGHC 295 (437)
T ss_dssp CTTSCEEEEEETTSCEEEEETT---T--TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE--EETTTTEE
T ss_pred CCCCCEEEEEcCCCeEEEEEcC---C--ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE--EEcCCCcE
Confidence 4 344 44443 3578997753 1 122221111122233444332 236777766666665 45443332
Q ss_pred EEEec-------------------------cCCcceeEEEEEeeCCeEEEEccCCcEEEEeeCC
Q 004094 588 EERAR-------------------------DYNANWMSAVEILDDDIYLGAENNFNLFTVRKNS 626 (774)
Q Consensus 588 ~~~a~-------------------------D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~ 626 (774)
...-. +.+...++++.+-+...++.+..+|.+.+++...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 296 QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTC
T ss_pred EEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCC
Confidence 21111 1134456777776434567888899999999764
No 71
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.79 E-value=0.04 Score=57.49 Aligned_cols=263 Identities=11% Similarity=0.072 Sum_probs=138.9
Q ss_pred CcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECC
Q 004094 175 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 252 (774)
Q Consensus 175 ~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~ 252 (774)
..|.+.+.+ +..++.+..++.+..+.+..++..... ......|.++++.+ ...+++.|.. ++.+.+|++.
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~~~~s~------~~~~l~s~~~-d~~v~iw~~~ 127 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAP------SGNYVACGGL-DNICSIYNLK 127 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECSSSCEEEEEECT------TSSEEEEEET-TCEEEEEETT
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe-ecCCccEEEEEECC------CCCEEEEEeC-CCeEEEEECc
Confidence 356666654 336666666788877776554322211 22356688999865 2567888888 9999999987
Q ss_pred CCCe--eEEecCCC-ccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceE
Q 004094 253 DLNL--ITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHV 329 (774)
Q Consensus 253 ~~~~--~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v 329 (774)
..+. .....+.. ......+.+. ....++.|..||.+..|.+.. +... ....-...++.-..+. .....
T Consensus 128 ~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~l~s~s~d~~i~~wd~~~--~~~~--~~~~~h~~~v~~~~~~--~~~~~ 198 (340)
T 1got_B 128 TREGNVRVSRELAGHTGYLSCCRFL---DDNQIVTSSGDTTCALWDIET--GQQT--TTFTGHTGDVMSLSLA--PDTRL 198 (340)
T ss_dssp TCSBSCEEEEEEECCSSCEEEEEEE---ETTEEEEEETTSCEEEEETTT--TEEE--EEECCCSSCEEEEEEC--TTSSE
T ss_pred cCCCcceeEEEecCCCccEEEEEEC---CCCcEEEEECCCcEEEEECCC--CcEE--EEEcCCCCceEEEEEC--CCCCE
Confidence 5321 11111211 0111222222 223588999999999987643 2211 1111112333322222 22233
Q ss_pred EEec--CCCeEEEecC-CcE-EEeeecccCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCCCCeEEEEEeCC---Ccc
Q 004094 330 FAAS--DRPTVIYSSN-KKL-LYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLG---EHP 401 (774)
Q Consensus 330 ~~~~--~~p~~l~~~~-~~~-~~~~~~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~---~tp 401 (774)
+++| +....++..+ +.. ....-....+.+++ |+. ..+.++... ++.+++..+...... ..+... ..+
T Consensus 199 l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~-~~p--~~~~l~s~s~d~~v~iwd~~~~~~~--~~~~~~~~~~~v 273 (340)
T 1got_B 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC-FFP--NGNAFATGSDDATCRLFDLRADQEL--MTYSHDNIICGI 273 (340)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEE-ECT--TSSEEEEEETTSCEEEEETTTTEEE--EEECCTTCCSCE
T ss_pred EEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEE-EcC--CCCEEEEEcCCCcEEEEECCCCcEE--EEEccCCcccce
Confidence 4433 3444444332 222 11111223344433 221 112344333 678998887754332 233222 246
Q ss_pred cEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEe
Q 004094 402 RRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGT 474 (774)
Q Consensus 402 ~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT 474 (774)
..++++|..+.++.++.+ ..+++.|..+.+.+..+.- ....+.|+. +.. ...+++.|.
T Consensus 274 ~~~~~s~~g~~l~~g~~d----------~~i~vwd~~~~~~~~~~~~-h~~~v~~~~---~s~-dg~~l~s~s 331 (340)
T 1got_B 274 TSVSFSKSGRLLLAGYDD----------FNCNVWDALKADRAGVLAG-HDNRVSCLG---VTD-DGMAVATGS 331 (340)
T ss_dssp EEEEECTTSSEEEEEETT----------SEEEEEETTTCCEEEEEEC-CSSCEEEEE---ECT-TSSCEEEEE
T ss_pred EEEEECCCCCEEEEECCC----------CeEEEEEcccCcEeeEeec-CCCcEEEEE---EcC-CCCEEEEEc
Confidence 788999998887777654 3799999988877766543 233455554 443 345666665
No 72
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.79 E-value=0.0055 Score=64.18 Aligned_cols=194 Identities=8% Similarity=-0.029 Sum_probs=117.3
Q ss_pred CcccEEEEecCC---CEEEEEEeccCCCCCceeeeEEEEEECCC-ceEE-EEEECCCCceEEEEEEEEEcCCCceEEEEE
Q 004094 399 EHPRRICHQEQS---RTFAICSLKNQSCAEESEMHFVRLLDDQT-FEFI-STYPLDTFEYGCSILSCSFSDDSNVYYCVG 473 (774)
Q Consensus 399 ~tp~~i~y~~~~---~~~~v~~~~~~~~~~~~~~~~l~l~d~~~-~~~i-~~~~~~~~E~~~si~~~~~~~~~~~~i~VG 473 (774)
..+..++++|.. +.++.++.+ ..|+++|..+ .+.+ ..+. .....+.+++ +.. ..++++.|
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~---~~~-~~~~l~s~ 104 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWA----------NDVRCWEVQDSGQTIPKAQQ-MHTGPVLDVC---WSD-DGSKVFTA 104 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETT----------SEEEEEEECTTSCEEEEEEE-ECSSCEEEEE---ECT-TSSEEEEE
T ss_pred CceEEEEEcCCCCCceEEEEECCC----------CcEEEEEcCCCCceeEEEec-cccCCEEEEE---ECc-CCCEEEEE
Confidence 456789999985 554444433 3789998875 4444 3332 2344556554 333 35677777
Q ss_pred eeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEecc---ccCeEE-EEE-CCEEEEEEeeecCCCchhhhhhc
Q 004094 474 TAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNA---FNGKLL-AAI-NQKIQLYKWMLRDDGTRELQSEC 548 (774)
Q Consensus 474 T~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~---~~~~lv-~~~-g~~l~v~~~~~~~~~~~~l~~~~ 548 (774)
+ ..|.+.+|++..+++.. .....++|++++- -++.++ ++. .+.|++|++.. + +....
T Consensus 105 ~----------~dg~v~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---~--~~~~~- 166 (368)
T 3mmy_A 105 S----------CDKTAKMWDLSSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS---S--NPMMV- 166 (368)
T ss_dssp E----------TTSEEEEEETTTTEEEE--EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC---S--SCSEE-
T ss_pred c----------CCCcEEEEEcCCCCcee--eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC---C--cEEEE-
Confidence 6 34899999998776544 3457899999985 255544 333 47888877531 1 12111
Q ss_pred ccccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeC-C----eEEEEccCCcEEEEe
Q 004094 549 GHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDD-D----IYLGAENNFNLFTVR 623 (774)
Q Consensus 549 ~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~-~----~~l~~D~~gnl~~l~ 623 (774)
+.....+.++....+.++++..-..+.++..+.....+..+. ...........+... . .++++..+|.+.++.
T Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 167 -LQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIE-SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp -EECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECC-CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred -EecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhcc-ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 122223456677788999999999988766544333333332 222333334443322 2 277888999999999
Q ss_pred eCCC
Q 004094 624 KNSE 627 (774)
Q Consensus 624 ~~~~ 627 (774)
.+..
T Consensus 245 ~~~~ 248 (368)
T 3mmy_A 245 INPP 248 (368)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8753
No 73
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.13 Score=61.45 Aligned_cols=202 Identities=13% Similarity=0.122 Sum_probs=111.5
Q ss_pred EEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeC
Q 004094 208 EVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALG 287 (774)
Q Consensus 208 ~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~ 287 (774)
+.....+...|+|+++++. ..++++|.. ||.|+||+.+..+.... +.......++.+.. ++ +|+.+..
T Consensus 10 ~~~~~gh~~~V~~lafspd------g~~lAsgs~-Dg~I~lw~~~~~~~~~~--~~~~~~V~~l~fsp--g~-~L~S~s~ 77 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFT------QNLLAIATV-TGEVHIYGQQQVEVVIK--LEDRSAIKEMRFVK--GI-YLVVINA 77 (902)
T ss_dssp EEEEEECSSCEEEEEEETT------TTEEEEEET-TSEEEEECSTTCEEEEE--CSSCCCEEEEEEET--TT-EEEEEET
T ss_pred cccccCCCCCcEEEEECCC------CCEEEEEeC-CCEEEEEeCCCcEEEEE--cCCCCCEEEEEEcC--CC-EEEEEEC
Confidence 3444566788999999762 578899988 99999999887655433 22122345555554 33 7899999
Q ss_pred CCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEec-CCCeEEEecC-CcEEEeee------------cc
Q 004094 288 DGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYSSN-KKLLYSNV------------NL 353 (774)
Q Consensus 288 ~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~l~~~~-~~~~~~~~------------~~ 353 (774)
||.+..|.+.. +... .... ...+|.-..+.. +.+.+++.+ +....++.-+ +++.-..+ ..
T Consensus 78 D~~v~lWd~~~--~~~~--~~~~-~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~ 151 (902)
T 2oaj_A 78 KDTVYVLSLYS--QKVL--TTVF-VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL 151 (902)
T ss_dssp TCEEEEEETTT--CSEE--EEEE-CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred cCeEEEEECCC--CcEE--EEEc-CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC
Confidence 99999988654 2211 1111 122333223321 223333333 3334444332 22210000 01
Q ss_pred cCceeeecccCCCCCC--c-EEEEe-CCeEEEEEEcCCCCeEEEEEeCC-------------------CcccEEEEecCC
Q 004094 354 KEVSHMCPFNSAAFPD--S-LAIAK-EGELTIGTIDDIQKLHIRSIPLG-------------------EHPRRICHQEQS 410 (774)
Q Consensus 354 ~~i~~~~~f~~~~~~~--~-l~~~~-~~~l~i~~l~~~~~~~~~~i~l~-------------------~tp~~i~y~~~~ 410 (774)
..|.+++ |+ |+ . ++... ++.+ +..+... -..+.+... ..+..++|+|+.
T Consensus 152 ~~V~sl~-~s----p~~~~~l~~g~~dg~v-lWd~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg 223 (902)
T 2oaj_A 152 SPIVSIQ-WN----PRDIGTVLISYEYVTL-TYSLVEN--EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS 223 (902)
T ss_dssp CCCCEEE-EE----TTEEEEEEEECSSCEE-EEETTTT--EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS
T ss_pred CCeEEEE-Ec----cCCCCEEEEEeCCCcE-EEECCCC--ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC
Confidence 1232222 21 22 2 33333 4555 7766543 233444322 347889999998
Q ss_pred CEEEEEEeccCCCCCceeeeEEEEEECCCceEEEE
Q 004094 411 RTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 445 (774)
Q Consensus 411 ~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~ 445 (774)
+.++.++.+. .|++.|..+.+.+..
T Consensus 224 ~~lasgs~Dg----------~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 224 LHIITIHEDN----------SLVFWDANSGHMIMA 248 (902)
T ss_dssp SEEEEEETTC----------CEEEEETTTCCEEEE
T ss_pred CEEEEEECCC----------eEEEEECCCCcEEEE
Confidence 8777776543 799999988877654
No 74
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.76 E-value=0.053 Score=55.95 Aligned_cols=255 Identities=13% Similarity=0.151 Sum_probs=136.4
Q ss_pred EEEEEEC--CCEEEEEEcC-CeEEEEEEc--CceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEEC
Q 004094 177 VNVATAN--ASQVLLATGG-GHLVYLEIG--DGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL 251 (774)
Q Consensus 177 I~~a~~~--~~~lvv~~~~-~~~~~~~~~--~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l 251 (774)
+...+.+ +..++++..+ +.+..+.++ .+++..+........+.++++.+ ....++++.+.++.+.+|++
T Consensus 40 ~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 40 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH------QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT------TSSEEEEEETTTTEEEEEEE
T ss_pred CceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcC------CCCEEEEEecCCCeEEEEEC
Confidence 4444443 4566666654 778777887 45665555455455778888865 24667777776899999998
Q ss_pred CC---CCeeEEecCCCccCceeEEeeeecCeeEEEEEe-CCCcEEEEEEecCCCccccce--e--eecCCCCeEEEEEEe
Q 004094 252 PD---LNLITKEHLGGEIIPRSVLLCAFEGISYLLCAL-GDGHLLNFLLNMKTGELTDRK--K--VSLGTQPITLRTFSS 323 (774)
Q Consensus 252 ~~---~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl-~~G~l~~y~~~~~~~~l~~~~--~--~~lG~~pv~l~~~~~ 323 (774)
.+ .+.+. .+.....|.++.+.+ +..+|+++. .+|.+..|.+.. ++.+.... . ...|..|..+ .+.
T Consensus 114 ~~~~~~~~~~--~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~- 186 (343)
T 1ri6_A 114 EDGLPVGVVD--VVEGLDGCHSANISP--DNRTLWVPALKQDRICLFTVSD-DGHLVAQDPAEVTTVEGAGPRHM-VFH- 186 (343)
T ss_dssp ETTEEEEEEE--EECCCTTBCCCEECT--TSSEEEEEEGGGTEEEEEEECT-TSCEEEEEEEEEECSTTCCEEEE-EEC-
T ss_pred CCCccccccc--cccCCCCceEEEECC--CCCEEEEecCCCCEEEEEEecC-CCceeeecccccccCCCCCcceE-EEC-
Confidence 42 22222 222223456665543 334566665 899999998864 13332211 1 1234344332 222
Q ss_pred CCcceEEEec-CCC-eEEEecC---CcEEE-eeecc--cC---cee--eecccCCCCCCc-EEE-Ee--CCeEEEEEEcC
Q 004094 324 KNTTHVFAAS-DRP-TVIYSSN---KKLLY-SNVNL--KE---VSH--MCPFNSAAFPDS-LAI-AK--EGELTIGTIDD 386 (774)
Q Consensus 324 ~~~~~v~~~~-~~p-~~l~~~~---~~~~~-~~~~~--~~---i~~--~~~f~~~~~~~~-l~~-~~--~~~l~i~~l~~ 386 (774)
.+...+++++ ... ..++..+ +++.. ..+.. .. ... ...|+ |++ .++ +. ++.+.+..+..
T Consensus 187 pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s----~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 187 PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT----PDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC----TTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC----CCCCEEEEEecCCCEEEEEEEcC
Confidence 1233455554 222 3334321 22221 11110 00 000 01121 232 333 33 57899998874
Q ss_pred C--CCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEE--ECCCc--eEEEEEECCCCceEEEEEE
Q 004094 387 I--QKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLL--DDQTF--EFISTYPLDTFEYGCSILS 459 (774)
Q Consensus 387 ~--~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~--d~~~~--~~i~~~~~~~~E~~~si~~ 459 (774)
. ..-....++.+..|..++++|+.+.+++++... ..+.++ |+.+. +.+..+.. ++.+.+++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~---------~~v~v~~~d~~~g~~~~~~~~~~--g~~p~~i~~ 330 (343)
T 1ri6_A 263 DGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS---------HHISVYEIVGEQGLLHEKGRYAV--GQGPMWVVV 330 (343)
T ss_dssp TSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTT---------CEEEEEEEETTTTEEEEEEEEEC--SSSCCEEEE
T ss_pred CCCceEEeeeecCCCccceEEECCCCCEEEEecCCC---------CeEEEEEEcCCCceeeEcccccc--CCCCeeEEE
Confidence 2 223566778777799999999988777665331 356665 76554 34444443 455555543
No 75
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=97.76 E-value=0.021 Score=60.47 Aligned_cols=291 Identities=12% Similarity=0.085 Sum_probs=153.1
Q ss_pred eccCCceeEEEEeCCCCCCCCCcceEEEEEe------cCCEEEEEECCCCCe--------eEEecCCCc-cCceeEEeee
Q 004094 211 HAQLEYEISCLDINPIGENPSYSQIAAVGMW------TDISVRIFSLPDLNL--------ITKEHLGGE-IIPRSVLLCA 275 (774)
Q Consensus 211 ~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~------~~~~i~i~~l~~~~~--------~~~~~l~~~-~~p~si~~~~ 275 (774)
...+..+|.|++|.+ + ...++.|.. .++.|++|.++.... .....+... ..+.++..
T Consensus 10 ~~~~g~PV~sv~fs~--d----g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~-- 81 (365)
T 4h5i_A 10 SYNVGYPAYGAKFLN--N----DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA-- 81 (365)
T ss_dssp EEECSSCEEEEEEEE--T----TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--
T ss_pred ecCCCCCEEEEEEeC--C----CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--
Confidence 445778899999965 1 455555532 134799999864211 111223321 12223221
Q ss_pred ecCeeEEEEE-----------eCCCcEEEEEEecCCCccccceeeec---C--CCCeEEEEEEeCCcceEEEecCCC--e
Q 004094 276 FEGISYLLCA-----------LGDGHLLNFLLNMKTGELTDRKKVSL---G--TQPITLRTFSSKNTTHVFAASDRP--T 337 (774)
Q Consensus 276 ~~~~~~L~vg-----------l~~G~l~~y~~~~~~~~l~~~~~~~l---G--~~pv~l~~~~~~~~~~v~~~~~~p--~ 337 (774)
. ...+++| ..|+.+-.|.++...+++...+.... + ...++...|.-++...+++.|+.. .
T Consensus 82 -~-~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i 159 (365)
T 4h5i_A 82 -S-KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIM 159 (365)
T ss_dssp -E-TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEE
T ss_pred -C-CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEE
Confidence 1 2344554 34777888888765544433222211 1 122555566434444445566543 2
Q ss_pred EEEecC-CcEEEeeecccCceeeecccCCCCCCcEEEEeCCeEEEEEEcCCCCeEEEEEeC--CCcccEEEEecCCCEEE
Q 004094 338 VIYSSN-KKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPL--GEHPRRICHQEQSRTFA 414 (774)
Q Consensus 338 ~l~~~~-~~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l--~~tp~~i~y~~~~~~~~ 414 (774)
.++..+ +...+..-....|.+++ |+. ....++..+++.+.+....+... ..+.... +..++.++|+|+.+.++
T Consensus 160 ~iwd~~~~~~~~~~~~~~~V~~v~-fsp--dg~~l~s~s~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~v~fspdg~~l~ 235 (365)
T 4h5i_A 160 RIIDPSDLTEKFEIETRGEVKDLH-FST--DGKVVAYITGSSLEVISTVTGSC-IARKTDFDKNWSLSKINFIADDTVLI 235 (365)
T ss_dssp EEEETTTTEEEEEEECSSCCCEEE-ECT--TSSEEEEECSSCEEEEETTTCCE-EEEECCCCTTEEEEEEEEEETTEEEE
T ss_pred EEeECCCCcEEEEeCCCCceEEEE-Ecc--CCceEEeccceeEEEEEeccCcc-eeeeecCCCCCCEEEEEEcCCCCEEE
Confidence 333322 33322222224454443 321 11234555677776665544322 2222222 23578899999988877
Q ss_pred EEEeccCCCCCceeeeEEEEEECCCceE--EEEEECCCC-ceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEE
Q 004094 415 ICSLKNQSCAEESEMHFVRLLDDQTFEF--ISTYPLDTF-EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILV 491 (774)
Q Consensus 415 v~~~~~~~~~~~~~~~~l~l~d~~~~~~--i~~~~~~~~-E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v 491 (774)
.++.+. .....+++.+...+.. .....+..+ ..++|++ +.. ...+|++|+. .|.|.+
T Consensus 236 ~~s~d~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~---~Sp-dg~~lasgs~----------D~~V~i 295 (365)
T 4h5i_A 236 AASLKK------GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMD---VDM-KGELAVLASN----------DNSIAL 295 (365)
T ss_dssp EEEESS------SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEE---ECT-TSCEEEEEET----------TSCEEE
T ss_pred EEecCC------cceeEEeecccccceecceeeeeecCCCCCeEeEE---ECC-CCCceEEEcC----------CCEEEE
Confidence 776553 1223566666544432 223333332 3455554 443 3568888873 378999
Q ss_pred EEEeCCeEEEEEEEeecCceeEeccc-cCeEEEEE--CCEEEEEEee
Q 004094 492 FIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQLYKWM 535 (774)
Q Consensus 492 ~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~~--g~~l~v~~~~ 535 (774)
|++..+++......-+.++|++|+-- +|+++++. .++|+||++.
T Consensus 296 wd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 296 VKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred EECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 99877664332223468899999854 56655433 4899998863
No 76
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=97.76 E-value=0.066 Score=57.13 Aligned_cols=279 Identities=12% Similarity=0.147 Sum_probs=141.8
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCC-----------------ccCceeEEeee
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG-----------------EIIPRSVLLCA 275 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~-----------------~~~p~si~~~~ 275 (774)
.....|.|+++++- ..+++.|. ++.+.||++.+.+.+....-.. +....++++.
T Consensus 62 ~h~~~V~~v~fspd------g~~la~g~--~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s- 132 (393)
T 1erj_A 62 DHTSVVCCVKFSND------GEYLATGC--NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS- 132 (393)
T ss_dssp ECSSCCCEEEECTT------SSEEEEEC--BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC-
T ss_pred CCCCEEEEEEECCC------CCEEEEEc--CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC-
Confidence 45678999999752 46777664 6789999998765543211100 0012233332
Q ss_pred ecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCC-CeEEEecC-CcEEEeeecc
Q 004094 276 FEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDR-PTVIYSSN-KKLLYSNVNL 353 (774)
Q Consensus 276 ~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~-p~~l~~~~-~~~~~~~~~~ 353 (774)
.+..+|+.|..||.+..|.+.. +... +...-...++.-..+.. +...++..+.. ...++.-+ ++....--..
T Consensus 133 -~dg~~l~s~~~d~~i~iwd~~~--~~~~--~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~ 206 (393)
T 1erj_A 133 -PDGKFLATGAEDRLIRIWDIEN--RKIV--MILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 206 (393)
T ss_dssp -TTSSEEEEEETTSCEEEEETTT--TEEE--EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred -CCCCEEEEEcCCCeEEEEECCC--CcEE--EEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeEEEEEcC
Confidence 2456789999999999987653 2211 11111123333222321 22334444333 33344322 2221111111
Q ss_pred cCceeeecccCCCCCCcEEEE-eCCeEEEEEEcCCCCeEEEEEe--------CCCcccEEEEecCCCEEEEEEeccCCCC
Q 004094 354 KEVSHMCPFNSAAFPDSLAIA-KEGELTIGTIDDIQKLHIRSIP--------LGEHPRRICHQEQSRTFAICSLKNQSCA 424 (774)
Q Consensus 354 ~~i~~~~~f~~~~~~~~l~~~-~~~~l~i~~l~~~~~~~~~~i~--------l~~tp~~i~y~~~~~~~~v~~~~~~~~~ 424 (774)
..+.+++ +.. .....++.. .++.+++..+.... ..+++. -...+..++++|+.+.++.++.+.
T Consensus 207 ~~v~~~~-~~~-~~~~~l~~~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~---- 278 (393)
T 1erj_A 207 DGVTTVA-VSP-GDGKYIAAGSLDRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR---- 278 (393)
T ss_dssp SCEEEEE-ECS-TTCCEEEEEETTSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS----
T ss_pred CCcEEEE-EEC-CCCCEEEEEcCCCcEEEEECCCCc--EEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC----
Confidence 2333332 211 111233333 36778888766532 222321 124577899999988777666543
Q ss_pred CceeeeEEEEEECCCceEEE----------EEEC-CCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEE
Q 004094 425 EESEMHFVRLLDDQTFEFIS----------TYPL-DTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFI 493 (774)
Q Consensus 425 ~~~~~~~l~l~d~~~~~~i~----------~~~~-~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~ 493 (774)
.|++.|..+..... ...+ .....+.++. +.. ...+++.|+ ..|.+++|+
T Consensus 279 ------~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~---~~~-~~~~l~sgs----------~D~~v~iwd 338 (393)
T 1erj_A 279 ------SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA---TTQ-NDEYILSGS----------KDRGVLFWD 338 (393)
T ss_dssp ------EEEEEEC---------------CEEEEEECCSSCEEEEE---ECG-GGCEEEEEE----------TTSEEEEEE
T ss_pred ------EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEE---ECC-CCCEEEEEe----------CCCeEEEEE
Confidence 68888765432211 0111 1223344443 322 346777665 348999999
Q ss_pred EeCCeEEEEEEEeecCceeEecccc-------CeEEEEE--CCEEEEEEee
Q 004094 494 VEDGKLQLIAEKETKGAVYSLNAFN-------GKLLAAI--NQKIQLYKWM 535 (774)
Q Consensus 494 i~~~kl~~~~~~~~~g~v~~i~~~~-------~~lv~~~--g~~l~v~~~~ 535 (774)
+..++..... ..+.++|++++... +.++++. ..+|++|++.
T Consensus 339 ~~~~~~~~~l-~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 339 KKSGNPLLML-QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp TTTCCEEEEE-ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCCCeEEEEE-CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 8765533221 34678899887543 3444433 3689998864
No 77
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.74 E-value=0.041 Score=58.41 Aligned_cols=283 Identities=11% Similarity=0.093 Sum_probs=146.0
Q ss_pred CcEEEEEECC---CEEEEEEcCCeEEEEEEcCce----EEE--EEe------ccCCceeEEEEeCCCCCCCCCcceEEEE
Q 004094 175 YSVNVATANA---SQVLLATGGGHLVYLEIGDGI----LTE--VKH------AQLEYEISCLDINPIGENPSYSQIAAVG 239 (774)
Q Consensus 175 ~~I~~a~~~~---~~lvv~~~~~~~~~~~~~~~~----l~~--~~~------~~l~~~is~l~~~~~~~~~~~~~~~~vg 239 (774)
..|.+.+.++ ..++.+..++.+..+.+..+. +.. ... ......|.++++.+. ....++.+
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~s~ 118 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-----DTGMFTSS 118 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-----CTTCEEEE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC-----CCcEEEEE
Confidence 4677777643 466666667888887776521 111 111 125678999998652 14567777
Q ss_pred EecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeec-CeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEE
Q 004094 240 MWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFE-GISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITL 318 (774)
Q Consensus 240 ~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~-~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l 318 (774)
.. ++.+.+|++.+.+.+...... ....++.+.... +...+++|..+|.+..|.+.. +... +.......++.-
T Consensus 119 ~~-d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~--~~~~--~~~~~~~~~v~~ 191 (408)
T 4a11_B 119 SF-DKTLKVWDTNTLQTADVFNFE--ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS--GSCS--HILQGHRQEILA 191 (408)
T ss_dssp ET-TSEEEEEETTTTEEEEEEECS--SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS--SCCC--EEECCCCSCEEE
T ss_pred eC-CCeEEEeeCCCCccceeccCC--CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC--ccee--eeecCCCCcEEE
Confidence 77 999999999887665443332 123344444332 345789999999999998754 2211 111222334432
Q ss_pred EEEEeCCcceEEEe-cC-CCeEEEecC-C--cEEEee---------------ecccCceeeecccCCCCCCcEEEEe-CC
Q 004094 319 RTFSSKNTTHVFAA-SD-RPTVIYSSN-K--KLLYSN---------------VNLKEVSHMCPFNSAAFPDSLAIAK-EG 377 (774)
Q Consensus 319 ~~~~~~~~~~v~~~-~~-~p~~l~~~~-~--~~~~~~---------------~~~~~i~~~~~f~~~~~~~~l~~~~-~~ 377 (774)
..+.. ....++++ +. ....++..+ + .+.... -....+.+++ |+. ..+.++... ++
T Consensus 192 ~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~--~~~~l~~~~~dg 267 (408)
T 4a11_B 192 VSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC-FTS--DGLHLLTVGTDN 267 (408)
T ss_dssp EEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE-ECT--TSSEEEEEETTS
T ss_pred EEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE-EcC--CCCEEEEecCCC
Confidence 23321 22223433 32 333343322 1 111110 0011222222 211 112344333 67
Q ss_pred eEEEEEEcCCCCeEEE---EEeCCCcc-cEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCce
Q 004094 378 ELTIGTIDDIQKLHIR---SIPLGEHP-RRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEY 453 (774)
Q Consensus 378 ~l~i~~l~~~~~~~~~---~i~l~~tp-~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~ 453 (774)
.+++..+.+....... ........ .........+.+++++.. ..++++|..+.+.+..+.- ....
T Consensus 268 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~v~d~~~~~~~~~~~~-~~~~ 336 (408)
T 4a11_B 268 RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG----------STIAVYTVYSGEQITMLKG-HYKT 336 (408)
T ss_dssp CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET----------TEEEEEETTTCCEEEEECC-CSSC
T ss_pred eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC----------CEEEEEECcCCcceeeecc-CCCe
Confidence 7888888765421111 11111111 112222333444444433 3899999998888876653 2344
Q ss_pred EEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe
Q 004094 454 GCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK 498 (774)
Q Consensus 454 ~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~k 498 (774)
+.++. +.. ...+++.|+ ..|.|.+|++...+
T Consensus 337 v~~~~---~s~-~~~~l~s~~----------~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 337 VDCCV---FQS-NFQELYSGS----------RDCNILAWVPSLYE 367 (408)
T ss_dssp EEEEE---EET-TTTEEEEEE----------TTSCEEEEEECC--
T ss_pred EEEEE---EcC-CCCEEEEEC----------CCCeEEEEeCCCCC
Confidence 56554 333 346777776 34899999997544
No 78
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.72 E-value=0.072 Score=56.36 Aligned_cols=263 Identities=13% Similarity=0.151 Sum_probs=145.0
Q ss_pred cCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeE
Q 004094 192 GGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSV 271 (774)
Q Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si 271 (774)
.++.+..+.+..+++... ......+.|+++.+ ....++++...++.|.+|++.+.+.+...... ..+.++
T Consensus 10 ~d~~v~v~d~~~~~~~~~--~~~~~~~~~~~~s~------dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~--~~v~~~ 79 (391)
T 1l0q_A 10 ESDNISVIDVTSNKVTAT--IPVGSNPMGAVISP------DGTKVYVANAHSNDVSIIDTATNNVIATVPAG--SSPQGV 79 (391)
T ss_dssp TTTEEEEEETTTTEEEEE--EECSSSEEEEEECT------TSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--SSEEEE
T ss_pred CCCEEEEEECCCCeEEEE--eecCCCcceEEECC------CCCEEEEECCCCCeEEEEECCCCeEEEEEECC--CCccce
Confidence 356777767665554332 23445588999865 24566565555999999999887765543333 245565
Q ss_pred EeeeecCeeEEE-EEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecC-CCeE-EEecC-CcE-
Q 004094 272 LLCAFEGISYLL-CALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASD-RPTV-IYSSN-KKL- 346 (774)
Q Consensus 272 ~~~~~~~~~~L~-vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~-~p~~-l~~~~-~~~- 346 (774)
++.+ +..+|+ .+..+|.+..|.+.. +.. .+....+..+..+ .+. .+...+++++. .-.+ ++... ++.
T Consensus 80 ~~sp--dg~~l~~~~~~~~~v~v~d~~~--~~~--~~~~~~~~~~~~~-~~s-~dg~~l~~~~~~~~~v~~~d~~~~~~~ 151 (391)
T 1l0q_A 80 AVSP--DGKQVYVTNMASSTLSVIDTTS--NTV--AGTVKTGKSPLGL-ALS-PDGKKLYVTNNGDKTVSVINTVTKAVI 151 (391)
T ss_dssp EECT--TSSEEEEEETTTTEEEEEETTT--TEE--EEEEECSSSEEEE-EEC-TTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred EECC--CCCEEEEEECCCCEEEEEECCC--CeE--EEEEeCCCCcceE-EEC-CCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 5543 334555 455679888876543 322 1122333333222 222 23345544443 2333 33322 332
Q ss_pred EEeeecccCceeeecccCCCCCCcEEEEe--CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCC
Q 004094 347 LYSNVNLKEVSHMCPFNSAAFPDSLAIAK--EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCA 424 (774)
Q Consensus 347 ~~~~~~~~~i~~~~~f~~~~~~~~l~~~~--~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~ 424 (774)
...+.. ..+..+ .|+. ..+.++++. ++.+.+..+... -..+.++.+..|..++++|..+.++++....
T Consensus 152 ~~~~~~-~~~~~~-~~~~--dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~---- 221 (391)
T 1l0q_A 152 NTVSVG-RSPKGI-AVTP--DGTKVYVANFDSMSISVIDTVTN--SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK---- 221 (391)
T ss_dssp EEEECC-SSEEEE-EECT--TSSEEEEEETTTTEEEEEETTTT--EEEEEEECSSEEEEEEECTTSSEEEEEEECS----
T ss_pred EEEecC-CCcceE-EECC--CCCEEEEEeCCCCEEEEEECCCC--eEEEEEecCCCccceEECCCCCEEEEEecCc----
Confidence 111211 222222 2321 112233333 466777766543 3456677788899999999988887776421
Q ss_pred CceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEE
Q 004094 425 EESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQ 500 (774)
Q Consensus 425 ~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~ 500 (774)
....++++|..+.+.+..+... ..+.++ .+..++ ++++++.. ..|++++|++..+++.
T Consensus 222 ---~~~~v~~~d~~~~~~~~~~~~~--~~~~~~---~~s~dg-~~l~~s~~---------~d~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 222 ---YFNTVSMIDTGTNKITARIPVG--PDPAGI---AVTPDG-KKVYVALS---------FXNTVSVIDTATNTIT 279 (391)
T ss_dssp ---SCCEEEEEETTTTEEEEEEECC--SSEEEE---EECTTS-SEEEEEET---------TTTEEEEEETTTTEEE
T ss_pred ---CCCcEEEEECCCCeEEEEEecC--CCccEE---EEccCC-CEEEEEcC---------CCCEEEEEECCCCcEE
Confidence 1247999999998888777653 334443 344433 34544431 2389999998766543
No 79
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=97.72 E-value=0.0062 Score=66.27 Aligned_cols=295 Identities=12% Similarity=0.091 Sum_probs=151.3
Q ss_pred CCcEEEEEEC---CCEEEEEEcCCeEEEEEEcCceEEE-EEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEE
Q 004094 174 GYSVNVATAN---ASQVLLATGGGHLVYLEIGDGILTE-VKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249 (774)
Q Consensus 174 ~~~I~~a~~~---~~~lvv~~~~~~~~~~~~~~~~l~~-~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~ 249 (774)
..+|++.+.+ +..|+.+..++.+..+.+..++... .........|+|+++.|.. ...++.|.+ ||+|++|
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~-----~~~l~s~s~-D~~v~iw 192 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLN-----TNQFYASSM-EGTTRLQ 192 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSC-----TTEEEEECS-SSCEEEE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCC-----CCEEEEEeC-CCEEEEe
Confidence 3467777765 3467777777888877765432222 2223456789999997532 456777777 9999999
Q ss_pred ECCCCCeeEEecCCC-ccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcce
Q 004094 250 SLPDLNLITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTH 328 (774)
Q Consensus 250 ~l~~~~~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~ 328 (774)
++............. .....++.+. .+..+|++|..||.+..|.+.. ..+. .......+|.=..|... ...
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~g~~dg~i~~wd~~~--~~~~---~~~~h~~~v~~v~~~p~-~~~ 264 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVS--ASSRMVVTGDNVGNVILLNMDG--KELW---NLRMHKKKVTHVALNPC-CDW 264 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEE--TTTTEEEEECSSSBEEEEESSS--CBCC---CSBCCSSCEEEEEECTT-CSS
T ss_pred eccCCceeEEeccCCCCccEEEEEEC--CCCCEEEEEeCCCcEeeeccCc--ceeE---EEecccceEEeeeecCC-Cce
Confidence 987533211111110 1112333332 2456789999999999987642 1111 11122334432233212 233
Q ss_pred EEEec--CCCeEEEecC-Cc----EEEeeecccCceeeecccCCCCCCcEEEE-eCCeEEEEEEcCCCCeEEEE-----E
Q 004094 329 VFAAS--DRPTVIYSSN-KK----LLYSNVNLKEVSHMCPFNSAAFPDSLAIA-KEGELTIGTIDDIQKLHIRS-----I 395 (774)
Q Consensus 329 v~~~~--~~p~~l~~~~-~~----~~~~~~~~~~i~~~~~f~~~~~~~~l~~~-~~~~l~i~~l~~~~~~~~~~-----i 395 (774)
++++| +....++.-+ .+ +....-+...|.++ .|+. ....|+.. .++.+++..+.......... .
T Consensus 265 ~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~-~~sp--dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 341 (435)
T 4e54_B 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAA-CFSP--DGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH 341 (435)
T ss_dssp EEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEEC-CBCT--TSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred EEEEecCcceeeEEecccccccceEEEeeeccccccce-eECC--CCCeeEEEcCCCEEEEEECCCCccceEEecccccc
Confidence 44433 3333343221 11 11001111233332 2321 11233333 36889999887654322111 1
Q ss_pred eCCCcccEEEEecCCCEEEEEEeccCCC--CCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEE
Q 004094 396 PLGEHPRRICHQEQSRTFAICSLKNQSC--AEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVG 473 (774)
Q Consensus 396 ~l~~tp~~i~y~~~~~~~~v~~~~~~~~--~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VG 473 (774)
.-..++.+..+++..+.++++....... -.......|+++|..+.+.+..+.-.....+.++.. |..+ ..+|+-|
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~--fspd-g~~lasg 418 (435)
T 4e54_B 342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNE--FNPM-GDTLASA 418 (435)
T ss_dssp CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEE--ECTT-SSCEEEE
T ss_pred cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEE--ECCC-CCEEEEE
Confidence 1122456778888888877776543100 000112368999998888887665444555666543 3332 3456544
Q ss_pred eeeeCCCCCCCcceEEEEEEEeCCeE
Q 004094 474 TAYVLPEENEPTKGRILVFIVEDGKL 499 (774)
Q Consensus 474 T~~~~~~e~~~~~Grl~v~~i~~~kl 499 (774)
. .|.|++|++.+++.
T Consensus 419 ~-----------d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 419 M-----------GYHILIWSQQEART 433 (435)
T ss_dssp C-----------SSEEEECCCC----
T ss_pred c-----------CCcEEEEECCcCee
Confidence 3 25789998775543
No 80
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=97.70 E-value=0.064 Score=55.31 Aligned_cols=280 Identities=15% Similarity=0.095 Sum_probs=146.2
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeE---EecCCC-ccCceeEEeeeecCeeEEEEEeCC
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLIT---KEHLGG-EIIPRSVLLCAFEGISYLLCALGD 288 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~---~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~ 288 (774)
.....|+++++.+. ...+++.|.+ |+.+.+|++....... ...+.. .....++.+. .+..+|+.|..|
T Consensus 15 gH~~~V~~l~~~~~-----~~~~l~s~s~-D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--~dg~~l~s~s~D 86 (319)
T 3frx_A 15 GHNGWVTSLATSAG-----QPNLLLSASR-DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT--ADGAYALSASWD 86 (319)
T ss_dssp CCSSCEEEEEECSS-----CTTEEEEEET-TSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEEC--TTSSEEEEEETT
T ss_pred cccceEEEEEccCC-----CccEEEEecC-CccEEEecCCCCCccccccceEEeCCcccEEEEEEC--CCCCEEEEEeCC
Confidence 35678999998642 1467777777 9999999985321110 111111 1122333332 245689999999
Q ss_pred CcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEe-c-CCCeEEEecCCc-EEEeeecccCceeeecccCC
Q 004094 289 GHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAA-S-DRPTVIYSSNKK-LLYSNVNLKEVSHMCPFNSA 365 (774)
Q Consensus 289 G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~-~-~~p~~l~~~~~~-~~~~~~~~~~i~~~~~f~~~ 365 (774)
|.+..|.+.. ++.. +...-...+|.-..+. .....+++ + +....++..+++ +....-....+.++.-....
T Consensus 87 ~~v~~wd~~~--~~~~--~~~~~h~~~v~~~~~~--~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~ 160 (319)
T 3frx_A 87 KTLRLWDVAT--GETY--QRFVGHKSDVMSVDID--KKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNE 160 (319)
T ss_dssp SEEEEEETTT--TEEE--EEEECCSSCEEEEEEC--TTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC-
T ss_pred CEEEEEECCC--CCee--EEEccCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCC
Confidence 9999987653 3211 1111112333322222 22233333 3 334444443333 21111111233333322221
Q ss_pred CC-CCc--EEEE-eCCeEEEEEEcCCCCeEEEEE-eCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCc
Q 004094 366 AF-PDS--LAIA-KEGELTIGTIDDIQKLHIRSI-PLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTF 440 (774)
Q Consensus 366 ~~-~~~--l~~~-~~~~l~i~~l~~~~~~~~~~i-~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~ 440 (774)
.. +++ ++.. .++.+++..+.... ....+ .-...+..++++|+.+.++.++.+ ..|++.|..+.
T Consensus 161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d----------g~i~iwd~~~~ 228 (319)
T 3frx_A 161 KADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFIGHNSNINTLTASPDGTLIASAGKD----------GEIMLWNLAAK 228 (319)
T ss_dssp -----CCEEEEEETTSCEEEEETTTTE--EEEEECCCCSCEEEEEECTTSSEEEEEETT----------CEEEEEETTTT
T ss_pred CCCCCccEEEEEeCCCEEEEEECCcch--hheeecCCCCcEEEEEEcCCCCEEEEEeCC----------CeEEEEECCCC
Confidence 11 122 3322 36788888876532 12222 223457789999998877776654 38999999998
Q ss_pred eEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE-------eecCceeE
Q 004094 441 EFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK-------ETKGAVYS 513 (774)
Q Consensus 441 ~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~-------~~~g~v~~ 513 (774)
+.+..+.. .+.+.+++ |.. ...+++.|+. +.+.+|++....+...... ...+.+.+
T Consensus 229 ~~~~~~~~--~~~v~~~~---~sp-~~~~la~~~~-----------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 291 (319)
T 3frx_A 229 KAMYTLSA--QDEVFSLA---FSP-NRYWLAAATA-----------TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS 291 (319)
T ss_dssp EEEEEEEC--CSCEEEEE---ECS-SSSEEEEEET-----------TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEE
T ss_pred cEEEEecC--CCcEEEEE---EcC-CCCEEEEEcC-----------CCcEEEEeCcCeeeeccCccccccccCcCcceeE
Confidence 88877664 34555543 444 3456776652 2377888765433221111 12456777
Q ss_pred eccc-cCe-EEEEE-CCEEEEEEee
Q 004094 514 LNAF-NGK-LLAAI-NQKIQLYKWM 535 (774)
Q Consensus 514 i~~~-~~~-lv~~~-g~~l~v~~~~ 535 (774)
++-- +|. |+++. .+.|++|++.
T Consensus 292 ~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 292 LAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEECCCCCEEEEeecCceEEEEEEe
Confidence 6643 454 44443 4678887753
No 81
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.039 Score=57.88 Aligned_cols=237 Identities=12% Similarity=0.074 Sum_probs=123.4
Q ss_pred CcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEe-ccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEEC
Q 004094 175 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKH-AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL 251 (774)
Q Consensus 175 ~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~-~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l 251 (774)
..|.+.+.+ +..++.+..++.+..+.+..+....... ......|+|+++.+-. ...+++.|.+ ||.|.+|++
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~~l~s~~~-dg~v~iwd~ 86 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK----FGTILASCSY-DGKVLIWKE 86 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG----GCSEEEEEET-TSCEEEEEE
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC----CCCEEEEecc-CCEEEEEEc
Confidence 357777765 4467777667888887876433333222 2356789999986421 1467777777 999999999
Q ss_pred CCCCeeEEecCCC-ccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeC------
Q 004094 252 PDLNLITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSK------ 324 (774)
Q Consensus 252 ~~~~~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~------ 324 (774)
.+.+......+.. .....++.+.+-....+|++|..||.+..|.+...... ......-...++.-..+...
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~ 164 (379)
T 3jrp_A 87 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT--SPIIIDAHAIGVNSASWAPATIEEDG 164 (379)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC--CEEEEECCTTCEEEEEECCCC-----
T ss_pred CCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce--eeEEecCCCCceEEEEEcCccccccc
Confidence 8754221112211 12334444443211467999999999999988653211 11111112233322222211
Q ss_pred ------CcceEEEecC-CCeEEEec-CCc--EEE-eee--cccCceeeecccCCCC-CCcEEEEe-CCeEEEEEEcCCCC
Q 004094 325 ------NTTHVFAASD-RPTVIYSS-NKK--LLY-SNV--NLKEVSHMCPFNSAAF-PDSLAIAK-EGELTIGTIDDIQK 389 (774)
Q Consensus 325 ------~~~~v~~~~~-~p~~l~~~-~~~--~~~-~~~--~~~~i~~~~~f~~~~~-~~~l~~~~-~~~l~i~~l~~~~~ 389 (774)
+...+++.+. ....++.. .+. ... ..+ ....+.+++ |+.... .+.++... ++.+++..+.....
T Consensus 165 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~-~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~ 243 (379)
T 3jrp_A 165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA-WSPTVLLRSYLASVSQDRTCIIWTQDNEQG 243 (379)
T ss_dssp -----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE-ECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEE-ECCCCCCCCeEEEEeCCCEEEEEeCCCCCc
Confidence 1233333333 33333322 111 111 111 112333332 322110 12233333 67899999987643
Q ss_pred eEEEEE-e---CCCcccEEEEecCCCEEEEEEec
Q 004094 390 LHIRSI-P---LGEHPRRICHQEQSRTFAICSLK 419 (774)
Q Consensus 390 ~~~~~i-~---l~~tp~~i~y~~~~~~~~v~~~~ 419 (774)
...+.+ . ....+..++++|+.+.+++++.+
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 277 (379)
T 3jrp_A 244 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 277 (379)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS
T ss_pred cceeeeeccccCCCcEEEEEEcCCCCEEEEecCC
Confidence 322222 2 33456788999998877777654
No 82
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.0021 Score=69.08 Aligned_cols=269 Identities=12% Similarity=0.118 Sum_probs=141.4
Q ss_pred cCCeEEEEEEcCceE-EEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCC----CCeeEEecCCC-c
Q 004094 192 GGGHLVYLEIGDGIL-TEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD----LNLITKEHLGG-E 265 (774)
Q Consensus 192 ~~~~~~~~~~~~~~l-~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~----~~~~~~~~l~~-~ 265 (774)
.++.+..+.+..+.. ..+........|.|+++.+ ...+++.|.. ++.+++|++.. .+.+.. +.. .
T Consensus 43 ~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~--~~~h~ 113 (416)
T 2pm9_A 43 TDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSH------NNKIIAGALD-NGSLELYSTNEANNAINSMAR--FSNHS 113 (416)
T ss_dssp CCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECS------SSSCEEEEES-SSCEEEECCSSTTSCCCEEEE--CCCSS
T ss_pred CCCeEEEEEccCCCCCcEEEEEecCCceEEEEECC------CCCeEEEEcc-CCeEEEeecccccccccchhh--ccCCc
Confidence 356666667655321 1222234567899999965 2467787777 99999999976 223222 211 1
Q ss_pred cCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCcc-----ccceeeecCCCCeEEEEEEeCCcceEEEecCCC-eEE
Q 004094 266 IIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGEL-----TDRKKVSLGTQPITLRTFSSKNTTHVFAASDRP-TVI 339 (774)
Q Consensus 266 ~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l-----~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p-~~l 339 (774)
....++.+.+- +..+|+.|..||.+..|.+....... .......-...++.-..+..++...++..+..- ..+
T Consensus 114 ~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 192 (416)
T 2pm9_A 114 SSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASI 192 (416)
T ss_dssp SCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEE
T ss_pred cceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEE
Confidence 22344444322 24678899999999998876432110 000000111223322223222223333333333 334
Q ss_pred EecC-CcE-EEeeec------ccCceeeecccCCCCCCcEEEEeC-C---eEEEEEEcCCCCeEEEEEe--CCCcccEEE
Q 004094 340 YSSN-KKL-LYSNVN------LKEVSHMCPFNSAAFPDSLAIAKE-G---ELTIGTIDDIQKLHIRSIP--LGEHPRRIC 405 (774)
Q Consensus 340 ~~~~-~~~-~~~~~~------~~~i~~~~~f~~~~~~~~l~~~~~-~---~l~i~~l~~~~~~~~~~i~--l~~tp~~i~ 405 (774)
+..+ ++. ...... ...+.+++ |+.. .+..++.... + .+++..+..... ..+.+. -...+..++
T Consensus 193 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~-~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~ 269 (416)
T 2pm9_A 193 WDLKAKKEVIHLSYTSPNSGIKQQLSVVE-WHPK-NSTRVATATGSDNDPSILIWDLRNANT-PLQTLNQGHQKGILSLD 269 (416)
T ss_dssp EETTTTEEEEEECCCCCSSCCCCCEEEEE-ECSS-CTTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEEE
T ss_pred EECCCCCcceEEeccccccccCCceEEEE-ECCC-CCCEEEEEECCCCCceEEEEeCCCCCC-CcEEeecCccCceeEEE
Confidence 4333 222 111111 12233322 2211 1112444443 3 788888876422 222222 345678899
Q ss_pred Eec-CCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCC
Q 004094 406 HQE-QSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEP 484 (774)
Q Consensus 406 y~~-~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~ 484 (774)
++| ..+.++.++.+ ..|+++|..+.+.+..+.-.. ..+.++. +..++..+++.|.
T Consensus 270 ~s~~~~~~l~s~~~d----------g~v~~wd~~~~~~~~~~~~~~-~~v~~~~---~s~~~~~~l~s~~---------- 325 (416)
T 2pm9_A 270 WCHQDEHLLLSSGRD----------NTVLLWNPESAEQLSQFPARG-NWCFKTK---FAPEAPDLFACAS---------- 325 (416)
T ss_dssp ECSSCSSCEEEEESS----------SEEEEECSSSCCEEEEEECSS-SCCCCEE---ECTTCTTEEEECC----------
T ss_pred eCCCCCCeEEEEeCC----------CCEEEeeCCCCccceeecCCC-CceEEEE---ECCCCCCEEEEEe----------
Confidence 998 66666655543 379999998888887766433 3344443 4444446777776
Q ss_pred cceEEEEEEEeCC
Q 004094 485 TKGRILVFIVEDG 497 (774)
Q Consensus 485 ~~Grl~v~~i~~~ 497 (774)
..|.|.+|++.+.
T Consensus 326 ~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 326 FDNKIEVQTLQNL 338 (416)
T ss_dssp SSSEEEEEESCCC
T ss_pred cCCcEEEEEccCC
Confidence 2389999998753
No 83
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=97.66 E-value=0.08 Score=55.29 Aligned_cols=280 Identities=15% Similarity=0.154 Sum_probs=143.5
Q ss_pred eeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCC--ccCceeEEeeeecCeeEEEEEeCCCcEEEE
Q 004094 217 EISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG--EIIPRSVLLCAFEGISYLLCALGDGHLLNF 294 (774)
Q Consensus 217 ~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~--~~~p~si~~~~~~~~~~L~vgl~~G~l~~y 294 (774)
+|.++++++ ...+++.|.. |+.|+||++.+.+......+.. .....++.+.+ +..+|+.|..||.+..|
T Consensus 18 ~v~~l~~sp------~g~~las~~~-D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 18 RCWFLAWNP------AGTLLASCGG-DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP--CGNYLASASFDATTCIW 88 (345)
T ss_dssp CEEEEEECT------TSSCEEEEET-TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT--TSSEEEEEETTSCEEEE
T ss_pred cEEEEEECC------CCCEEEEEcC-CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC--CCCEEEEEECCCcEEEE
Confidence 788999975 2467777777 9999999987654332221211 11233443332 45689999999999999
Q ss_pred EEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEec-CCCeEEEecC--CcEE-Eeee--cccCceeeecccCCCCC
Q 004094 295 LLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYSSN--KKLL-YSNV--NLKEVSHMCPFNSAAFP 368 (774)
Q Consensus 295 ~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~l~~~~--~~~~-~~~~--~~~~i~~~~~f~~~~~~ 368 (774)
.+.... ........--..+|.-..+.. +.+.++..+ +....++.-+ .... ...+ ....+.+++ |+.. .
T Consensus 89 ~~~~~~--~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~-~~p~--~ 162 (345)
T 3fm0_A 89 KKNQDD--FECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV-WHPS--Q 162 (345)
T ss_dssp EECCC---EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE-ECSS--S
T ss_pred EccCCC--eEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE-ECCC--C
Confidence 876432 111111111123443333322 222333333 4444444322 1111 1111 112333332 2211 1
Q ss_pred CcEEEEe-CCeEEEEEEcCCCCeEEEEEeC-CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEEC---------
Q 004094 369 DSLAIAK-EGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDD--------- 437 (774)
Q Consensus 369 ~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~--------- 437 (774)
+.++... ++.+++..+..........+.- ...+..++|+|+.+.++.++.+. .|++.|.
T Consensus 163 ~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~----------~v~iW~~~~~~~~~~~ 232 (345)
T 3fm0_A 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR----------TVRIWRQYLPGNEQGV 232 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS----------CEEEEEEECTTCTTCC
T ss_pred CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC----------eEEEeccccCCCCccc
Confidence 2344443 6788888876543233334332 34578899999988777666543 4666552
Q ss_pred ------CCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC------eEEEEEE-
Q 004094 438 ------QTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG------KLQLIAE- 504 (774)
Q Consensus 438 ------~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~------kl~~~~~- 504 (774)
.+|+.+.++.-.....+.++. +.. ...+++.|.. .|.+.+|+...+ .+.+...
T Consensus 233 ~~~~~~~~~~~~~~~~~~h~~~v~~v~---~~~-~~~~l~s~~~----------d~~i~vw~~~~~~~~~~~~~~~~~~~ 298 (345)
T 3fm0_A 233 ACSGSDPSWKCICTLSGFHSRTIYDIA---WCQ-LTGALATACG----------DDAIRVFQEDPNSDPQQPTFSLTAHL 298 (345)
T ss_dssp CCC---CEEEEEEEECSSCSSCEEEEE---ECT-TTCCEEEEET----------TSCEEEEEECTTSCTTSCCEEEEEEE
T ss_pred eeeccCCccceeEEecCCCCCcEEEEE---Eec-CCCEEEEEeC----------CCeEEEEEeCCCCCcceeeEEEEeee
Confidence 112333332222233344443 332 2345665552 367888888632 2333222
Q ss_pred -EeecCceeEeccc-cC-eEEEEE--CCEEEEEEee
Q 004094 505 -KETKGAVYSLNAF-NG-KLLAAI--NQKIQLYKWM 535 (774)
Q Consensus 505 -~~~~g~v~~i~~~-~~-~lv~~~--g~~l~v~~~~ 535 (774)
..+.++|++++-- ++ .++++. ..+|++|+..
T Consensus 299 ~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 299 HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp TTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred cccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 2357889998854 23 355444 4789998763
No 84
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.65 E-value=0.014 Score=61.36 Aligned_cols=219 Identities=11% Similarity=0.040 Sum_probs=131.2
Q ss_pred eCCeEEEEEEcCCCCeEEEEEeC---CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCC
Q 004094 375 KEGELTIGTIDDIQKLHIRSIPL---GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF 451 (774)
Q Consensus 375 ~~~~l~i~~l~~~~~~~~~~i~l---~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~ 451 (774)
.++.+++..+.+.......+..+ ...++.++|+|+.+.++.++.+. .|++.|..+.+.+.++.- ..
T Consensus 101 ~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~----------~i~iwd~~~~~~~~~~~~-h~ 169 (344)
T 4gqb_B 101 DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI----------CIKVWDLAQQVVLSSYRA-HA 169 (344)
T ss_dssp TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS----------CEEEEETTTTEEEEEECC-CS
T ss_pred CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC----------eEEEEECCCCcEEEEEcC-cC
Confidence 36778888887766554444333 24578899999988777766543 799999999888876543 23
Q ss_pred ceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe-EEEEEEEeecCceeEeccc--cCeEEE-EE-C
Q 004094 452 EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK-LQLIAEKETKGAVYSLNAF--NGKLLA-AI-N 526 (774)
Q Consensus 452 E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~k-l~~~~~~~~~g~v~~i~~~--~~~lv~-~~-g 526 (774)
..+.++. +..++..+++.|. ..|.|.+|++..++ +..+........+++++-. ++.+++ +. .
T Consensus 170 ~~V~~~~---~~~~~~~~l~s~s----------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d 236 (344)
T 4gqb_B 170 AQVTCVA---ASPHKDSVFLSCS----------EDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN 236 (344)
T ss_dssp SCEEEEE---ECSSCTTEEEEEE----------TTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred CceEEEE---ecCCCCCceeeec----------cccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence 4455543 4444556666654 23789999987554 3333333345567777654 455554 33 4
Q ss_pred CEEEEEEeeecCCCchhhhhhcccccceEEEEEEE--eC-CEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEE
Q 004094 527 QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQT--RG-DFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVE 603 (774)
Q Consensus 527 ~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~--~~-~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~ 603 (774)
+.|++|++. .+ +.+.....+.. .+.++.. .+ ++|+.|..-..|.+ |+...+++..+ ..+...|+++.
T Consensus 237 g~v~~wd~~---~~-~~~~~~~~h~~--~v~~v~fsp~g~~~lasgs~D~~i~v--wd~~~~~~~~~--~~H~~~V~~v~ 306 (344)
T 4gqb_B 237 GTVSLVDTK---ST-SCVLSSAVHSQ--CVTGLVFSPHSVPFLASLSEDCSLAV--LDSSLSELFRS--QAHRDFVRDAT 306 (344)
T ss_dssp SEEEEEESC---C---CCEEEECCSS--CEEEEEECSSSSCCEEEEETTSCEEE--ECTTCCEEEEE--CCCSSCEEEEE
T ss_pred CcEEEEECC---CC-cEEEEEcCCCC--CEEEEEEccCCCeEEEEEeCCCeEEE--EECCCCcEEEE--cCCCCCEEEEE
Confidence 689998753 11 11211111122 2344544 34 46777877777766 56666665443 33556788888
Q ss_pred EeeCC-eEE-EEccCCcEEEEeeCCC
Q 004094 604 ILDDD-IYL-GAENNFNLFTVRKNSE 627 (774)
Q Consensus 604 ~l~~~-~~l-~~D~~gnl~~l~~~~~ 627 (774)
|-.++ .++ .+-.||.+.+...+.+
T Consensus 307 ~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 307 WSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 75333 454 4667999999888653
No 85
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.63 E-value=0.078 Score=54.22 Aligned_cols=277 Identities=10% Similarity=0.045 Sum_probs=142.0
Q ss_pred CcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECC
Q 004094 175 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 252 (774)
Q Consensus 175 ~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~ 252 (774)
..|.+.+.+ +..++.+..++.+..+....+++...- ......|.++++.+ ...+++.|.. ++.+.+|++.
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~------~~~~l~s~~~-d~~i~vwd~~ 95 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSS------DSNLLVSASD-DKTLKIWDVS 95 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECT------TSSEEEEEET-TSEEEEEETT
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-ccCCCceEEEEEcC------CCCEEEEECC-CCEEEEEECC
Confidence 457777765 346666666777777776555543321 23456799999865 2467787777 9999999998
Q ss_pred CCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEe
Q 004094 253 DLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAA 332 (774)
Q Consensus 253 ~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~ 332 (774)
+.+.+....-. .....++.+.+ +..+|+.|..||.+..|.+.. +.. .+.......|+.-..+.. +...++..
T Consensus 96 ~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~ 167 (312)
T 4ery_A 96 SGKCLKTLKGH-SNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKT--GKC--LKTLPAHSDPVSAVHFNR-DGSLIVSS 167 (312)
T ss_dssp TCCEEEEEECC-SSCEEEEEECS--SSSEEEEEETTSCEEEEETTT--CCE--EEEECCCSSCEEEEEECT-TSSEEEEE
T ss_pred CCcEEEEEcCC-CCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCC--CEE--EEEecCCCCcEEEEEEcC-CCCEEEEE
Confidence 76664432111 01222333322 346789999999999987653 221 111222234544333322 22333333
Q ss_pred c-CCCeEEEecC-CcE-EEeeecc-cCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCCCCeEEEEEeCCCc---ccEE
Q 004094 333 S-DRPTVIYSSN-KKL-LYSNVNL-KEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLGEH---PRRI 404 (774)
Q Consensus 333 ~-~~p~~l~~~~-~~~-~~~~~~~-~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~t---p~~i 404 (774)
+ +....++..+ ++. ....... ..+.. ..|+. ..+.++... ++.+++..+.... ..+.+.-... ....
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~ 242 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSF-VKFSP--NGKYILAATLDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFA 242 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSCCCEEE-EEECT--TSSEEEEEETTTEEEEEETTTTE--EEEEECSSCCSSSCCCE
T ss_pred eCCCcEEEEECCCCceeeEEeccCCCceEE-EEECC--CCCEEEEEcCCCeEEEEECCCCc--EEEEEEecCCceEEEEE
Confidence 3 3333344332 222 1111111 12222 22321 112344433 6788888876542 2333322111 1123
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCC
Q 004094 405 CHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEP 484 (774)
Q Consensus 405 ~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~ 484 (774)
.+.+....+++.+... ..|++.|..+.+.+..+.- ..+.+.++. +.. ..++++.++.-
T Consensus 243 ~~~~~~~~~l~sg~~d---------g~i~vwd~~~~~~~~~~~~-h~~~v~~~~---~~p-~~~~l~s~~~~-------- 300 (312)
T 4ery_A 243 NFSVTGGKWIVSGSED---------NLVYIWNLQTKEIVQKLQG-HTDVVISTA---CHP-TENIIASAALE-------- 300 (312)
T ss_dssp EEECSSSCEEEECCTT---------SCEEEEETTTCCEEEEECC-CSSCEEEEE---ECS-SSSEEEEEECT--------
T ss_pred EEEeCCCcEEEEECCC---------CEEEEEECCCchhhhhhhc-cCCcEEEEe---ecC-cCCceEEEEcc--------
Confidence 3343334444443331 3799999988887766543 234445443 332 35666666521
Q ss_pred cceEEEEEEE
Q 004094 485 TKGRILVFIV 494 (774)
Q Consensus 485 ~~Grl~v~~i 494 (774)
..|.|.+|+.
T Consensus 301 ~d~~i~~W~~ 310 (312)
T 4ery_A 301 NDKTIKLWKS 310 (312)
T ss_dssp TTCCEEEEEC
T ss_pred CCccEEEecC
Confidence 2377888764
No 86
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.62 E-value=0.074 Score=56.34 Aligned_cols=251 Identities=12% Similarity=0.026 Sum_probs=127.8
Q ss_pred CCcEEEEEECC---CEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEE
Q 004094 174 GYSVNVATANA---SQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFS 250 (774)
Q Consensus 174 ~~~I~~a~~~~---~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~ 250 (774)
...|.+.+..+ ..++.+..++.+..+.+..++.... ......+.++++.+... ....+++|.. ++.+.+|+
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~v~~~d 172 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADV--FNFEETVYSHHMSPVST---KHCLVAVGTR-GPKVQLCD 172 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEECSSCS---SCCEEEEEES-SSSEEEEE
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcccee--ccCCCceeeeEeecCCC---CCcEEEEEcC-CCeEEEEe
Confidence 34687777653 3666666678888888766554332 34667788888865432 2457777777 99999999
Q ss_pred CCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccc------ee------eecCCCCeEE
Q 004094 251 LPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDR------KK------VSLGTQPITL 318 (774)
Q Consensus 251 l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~------~~------~~lG~~pv~l 318 (774)
+...+.+....-. .....++.+.+- +...|++|..||.+..|.+......+... .. ..-...++.-
T Consensus 173 ~~~~~~~~~~~~~-~~~v~~~~~~~~-~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 250 (408)
T 4a11_B 173 LKSGSCSHILQGH-RQEILAVSWSPR-YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG 250 (408)
T ss_dssp SSSSCCCEEECCC-CSCEEEEEECSS-CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred CCCcceeeeecCC-CCcEEEEEECCC-CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE
Confidence 9876554322111 112334443321 22347789999999999875432211100 00 0111223322
Q ss_pred EEEEeCCcceEEEecC-CCeEEEecC-CcEE--Ee-eecccCceeeecccCCCCCCcEE-EEeCCeEEEEEEcCCCCeEE
Q 004094 319 RTFSSKNTTHVFAASD-RPTVIYSSN-KKLL--YS-NVNLKEVSHMCPFNSAAFPDSLA-IAKEGELTIGTIDDIQKLHI 392 (774)
Q Consensus 319 ~~~~~~~~~~v~~~~~-~p~~l~~~~-~~~~--~~-~~~~~~i~~~~~f~~~~~~~~l~-~~~~~~l~i~~l~~~~~~~~ 392 (774)
..+.. +...+++.+. ....++.-+ ++.. +. .....................++ ...++.+.+..+.+.. ..
T Consensus 251 ~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~~ 327 (408)
T 4a11_B 251 LCFTS-DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE--QI 327 (408)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC--EE
T ss_pred EEEcC-CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc--ce
Confidence 22221 2233444433 333333322 1110 00 00000000000000011122334 4568889988887643 23
Q ss_pred EEEe-CCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEE
Q 004094 393 RSIP-LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 445 (774)
Q Consensus 393 ~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~ 445 (774)
+.+. -...+..++++|+.+.++.++.+ ..|++.|..+.+.+..
T Consensus 328 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d----------g~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 328 TMLKGHYKTVDCCVFQSNFQELYSGSRD----------CNILAWVPSLYEPVPD 371 (408)
T ss_dssp EEECCCSSCEEEEEEETTTTEEEEEETT----------SCEEEEEECC------
T ss_pred eeeccCCCeEEEEEEcCCCCEEEEECCC----------CeEEEEeCCCCCccCC
Confidence 4443 23457789999998887776654 3789999888776543
No 87
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=97.62 E-value=0.085 Score=54.32 Aligned_cols=284 Identities=13% Similarity=0.130 Sum_probs=146.1
Q ss_pred cCcEEEEecCCCceeeeEeCCCCCcEEEEEEC--CCEEEEEEc-CCeEEEEEEcCceE-EEEEeccCCceeEE-EEeCCC
Q 004094 152 SGSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATG-GGHLVYLEIGDGIL-TEVKHAQLEYEISC-LDINPI 226 (774)
Q Consensus 152 ~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~-~~~~~~~~~~~~~l-~~~~~~~l~~~is~-l~~~~~ 226 (774)
.+.|++++.++++....+..+ ...+ ..+.+ +..++++.. ++.+..+....+++ ... ......+.. +++.+
T Consensus 19 ~~~v~~~d~~~~~~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~s~- 93 (331)
T 3u4y_A 19 LRRISFFSTDTLEILNQITLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA--IQEGQSSMADVDITP- 93 (331)
T ss_dssp GTEEEEEETTTCCEEEEEECC-CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE--EEECSSCCCCEEECT-
T ss_pred CCeEEEEeCcccceeeeEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe--cccCCCCccceEECC-
Confidence 346777777765555555543 2334 55554 445666665 45676666655543 221 122223334 77754
Q ss_pred CCCCCCcceEEEEEecCC--EEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCc-EEEEEEecCCCcc
Q 004094 227 GENPSYSQIAAVGMWTDI--SVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGH-LLNFLLNMKTGEL 303 (774)
Q Consensus 227 ~~~~~~~~~~~vg~~~~~--~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~-l~~y~~~~~~~~l 303 (774)
...+++++.+.++ .|.+|++.+.+.+...... ..|+++.+.+- ++..++.+..++. +..|.++.. +.+
T Consensus 94 -----dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~spd-g~~l~~~~~~~~~~i~~~~~~~~-g~~ 164 (331)
T 3u4y_A 94 -----DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP--YDAVGIAISPN-GNGLILIDRSSANTVRRFKIDAD-GVL 164 (331)
T ss_dssp -----TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC--TTEEEEEECTT-SSCEEEEEETTTTEEEEEEECTT-CCE
T ss_pred -----CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC--CCccceEECCC-CCEEEEEecCCCceEEEEEECCC-CcE
Confidence 2456665555334 9999999877665443332 35667665542 2233344566688 999998752 322
Q ss_pred ccceeeecCCCCeEEEEEEeCCcceEEEecCCCeEE-EecCCcEEEeeecccCceeeecccCCCCCCcEEEEe--CCeEE
Q 004094 304 TDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI-YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAK--EGELT 380 (774)
Q Consensus 304 ~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l-~~~~~~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~--~~~l~ 380 (774)
...... .+-.+..|.-+ +..+++ .++++. ++.+.
T Consensus 165 ~~~~~~-------------------~~~~~~~~~~~~~spdg~------------------------~l~v~~~~~~~v~ 201 (331)
T 3u4y_A 165 FDTGQE-------------------FISGGTRPFNITFTPDGN------------------------FAFVANLIGNSIG 201 (331)
T ss_dssp EEEEEE-------------------EECSSSSEEEEEECTTSS------------------------EEEEEETTTTEEE
T ss_pred eecCCc-------------------cccCCCCccceEECCCCC------------------------EEEEEeCCCCeEE
Confidence 111000 00001111100 111111 112221 34455
Q ss_pred EEEEcCCCC-eEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceE--EEEEECC--CCce-E
Q 004094 381 IGTIDDIQK-LHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEF--ISTYPLD--TFEY-G 454 (774)
Q Consensus 381 i~~l~~~~~-~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~--i~~~~~~--~~E~-~ 454 (774)
+..+.+... -.++.++.+..|..++++|+.+.++++... ...|.++|..+.+. +..+.-. .... .
T Consensus 202 v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~---------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
T 3u4y_A 202 ILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTES---------TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPL 272 (331)
T ss_dssp EEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSS---------EEEEEEEETTTTEEEEEEEEECCCCCCCGGG
T ss_pred EEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcC---------CCEEEEEECCCCceeeecccccccccCCCCc
Confidence 555543322 236677888899999999999866665432 24688999988776 4443321 1111 1
Q ss_pred EEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCce
Q 004094 455 CSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAV 511 (774)
Q Consensus 455 ~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v 511 (774)
.....+.+..+++ +++++.. ..|.+.+|++....+..+...+..|.+
T Consensus 273 ~~~~~~~~spdg~-~l~v~~~---------~~~~v~v~d~~~~~~~~~~~~~~~g~~ 319 (331)
T 3u4y_A 273 FGANQMALNKTET-KLFISAN---------ISRELKVFTISGKVVGYVAGIEANGGI 319 (331)
T ss_dssp TTCCCEEECTTSS-EEEEEET---------TTTEEEEEETTSCEEEECTTCCCBSCE
T ss_pred ccccceEECCCCC-EEEEecC---------CCCcEEEEEecCCcccceecccccCCe
Confidence 1101123444434 5555442 347899999876655544433334433
No 88
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=97.60 E-value=0.099 Score=54.74 Aligned_cols=271 Identities=16% Similarity=0.184 Sum_probs=148.7
Q ss_pred cceEEEEEecC---CEEEEEECCC--CCeeEEecCCCccCceeEEeeeecCeeEEEEEeCC----CcEEEEEEecCCCcc
Q 004094 233 SQIAAVGMWTD---ISVRIFSLPD--LNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGD----GHLLNFLLNMKTGEL 303 (774)
Q Consensus 233 ~~~~~vg~~~~---~~i~i~~l~~--~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~----G~l~~y~~~~~~~~l 303 (774)
..+++||++.. +.|.+|.++. .+....... ....|..+++.+ +..+|+++..+ |.+..|.++..+|.+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~sp--dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSA--DGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECT--TSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECC--CCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 45788998853 5799998742 332211111 223566666553 34567776664 899999999866665
Q ss_pred ccceeee-cCCCCeEEEEEEeCCcceEEEec--CCCeEEEec--CCcEE----Eeeecc-c---------CceeeecccC
Q 004094 304 TDRKKVS-LGTQPITLRTFSSKNTTHVFAAS--DRPTVIYSS--NKKLL----YSNVNL-K---------EVSHMCPFNS 364 (774)
Q Consensus 304 ~~~~~~~-lG~~pv~l~~~~~~~~~~v~~~~--~~p~~l~~~--~~~~~----~~~~~~-~---------~i~~~~~f~~ 364 (774)
....... .|..|..+.. +...+++++ +....++.- ++.+. ...... . .+.+ ..|
T Consensus 90 ~~~~~~~~~~~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~-- 162 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHC-VRI-- 162 (361)
T ss_dssp EEEEEEECSSSCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEE-EEE--
T ss_pred EEeeEeccCCCCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceE-EEE--
Confidence 4433333 3556665543 234566554 222333322 12110 000000 0 0011 112
Q ss_pred CCCCCc--EEEEe--CCeEEEEEEcCCCC------e------EEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCcee
Q 004094 365 AAFPDS--LAIAK--EGELTIGTIDDIQK------L------HIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESE 428 (774)
Q Consensus 365 ~~~~~~--l~~~~--~~~l~i~~l~~~~~------~------~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~ 428 (774)
.|++ ++++. .+.+.+..++.... + .....+.+..|+.++++|+.+.+++++...
T Consensus 163 --spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-------- 232 (361)
T 3scy_A 163 --TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG-------- 232 (361)
T ss_dssp --CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT--------
T ss_pred --CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC--------
Confidence 1333 44444 57889998886543 3 233455677899999999998776665321
Q ss_pred eeEEEEEECCCce--EEEEEECCCC--ceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe--CCeEEEE
Q 004094 429 MHFVRLLDDQTFE--FISTYPLDTF--EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE--DGKLQLI 502 (774)
Q Consensus 429 ~~~l~l~d~~~~~--~i~~~~~~~~--E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~--~~kl~~~ 502 (774)
..|.++|..+.+ .+..+...+. ..+.+ +.+..+++ +++++... ..+++.+|++. .++++.+
T Consensus 233 -~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~---i~~spdg~-~l~v~~~~--------~~~~i~v~~~~~~~g~~~~~ 299 (361)
T 3scy_A 233 -GTVIAFRYADGMLDEIQTVAADTVNAQGSGD---IHLSPDGK-YLYASNRL--------KADGVAIFKVDETNGTLTKV 299 (361)
T ss_dssp -CEEEEEEEETTEEEEEEEEESCSSCCCCEEE---EEECTTSS-EEEEEECS--------SSCEEEEEEECTTTCCEEEE
T ss_pred -CeEEEEEecCCceEEeEEEecCCCCCCCccc---EEECCCCC-EEEEECCC--------CCCEEEEEEEcCCCCcEEEe
Confidence 357777765443 3444433222 22323 33554444 45544321 14789999996 5677777
Q ss_pred EEEeecCceeEeccc-cC-eEEEEE--CCEEEEEEeee
Q 004094 503 AEKETKGAVYSLNAF-NG-KLLAAI--NQKIQLYKWML 536 (774)
Q Consensus 503 ~~~~~~g~v~~i~~~-~~-~lv~~~--g~~l~v~~~~~ 536 (774)
........+.+++-- +| +|+++. ++.+.+|+++.
T Consensus 300 ~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 300 GYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp EEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred eEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 766554566666543 34 466665 47899998863
No 89
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.59 E-value=0.12 Score=55.44 Aligned_cols=294 Identities=12% Similarity=0.118 Sum_probs=156.3
Q ss_pred ceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCC---C-ccCceeEEeeeecCe
Q 004094 204 GILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLG---G-EIIPRSVLLCAFEGI 279 (774)
Q Consensus 204 ~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~---~-~~~p~si~~~~~~~~ 279 (774)
+.+..+...+....+.|+++.+ ...++++...++.|.+|++.+.+.+...... . ...+.++.+. .+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~s~-------~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 181 (433)
T 3bws_A 111 ITHRFISRFKTGFQPKSVRFID-------NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP--EHN 181 (433)
T ss_dssp CSEEEEEEEECSSCBCCCEESS-------SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG--GGT
T ss_pred CcceEEEEEcCCCCceEEEEeC-------CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc--CCC
Confidence 4455555556666677888864 2345555555889999999876665321111 0 0112233331 234
Q ss_pred eEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEec--CCCeEEEecC-CcEEEeeecc-cC
Q 004094 280 SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS--DRPTVIYSSN-KKLLYSNVNL-KE 355 (774)
Q Consensus 280 ~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~--~~p~~l~~~~-~~~~~~~~~~-~~ 355 (774)
..++.+..+|.+..|.++. +... +.......++.-..+.. +...+++.+ +....++..+ ++.. ..+.. ..
T Consensus 182 ~~~~s~~~d~~v~~~d~~~--~~~~--~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~ 255 (433)
T 3bws_A 182 ELWVSQMQANAVHVFDLKT--LAYK--ATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEI-RKTDKIGL 255 (433)
T ss_dssp EEEEEEGGGTEEEEEETTT--CCEE--EEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEE-EECCCCSE
T ss_pred EEEEEECCCCEEEEEECCC--ceEE--EEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEE-EEecCCCC
Confidence 5677888899998887643 2221 11222222332223332 334566555 2333334322 3321 11111 12
Q ss_pred ceeeecccCCCCCCcEEEEe---------CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCc
Q 004094 356 VSHMCPFNSAAFPDSLAIAK---------EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEE 426 (774)
Q Consensus 356 i~~~~~f~~~~~~~~l~~~~---------~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~ 426 (774)
+.+++ |+. ..+.++... ++.+.+..+.... ..+.+.....|+.++++|+.+.+++.+...
T Consensus 256 ~~~~~-~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~------ 324 (433)
T 3bws_A 256 PRGLL-LSK--DGKELYIAQFSASNQESGGGRLGIYSMDKEK--LIDTIGPPGNKRHIVSGNTENKIYVSDMCC------ 324 (433)
T ss_dssp EEEEE-ECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTTE--EEEEEEEEECEEEEEECSSTTEEEEEETTT------
T ss_pred ceEEE-EcC--CCCEEEEEECCCCccccCCCeEEEEECCCCc--EEeeccCCCCcceEEECCCCCEEEEEecCC------
Confidence 22222 211 112233333 3466666665432 334444456788999999988766665432
Q ss_pred eeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCC-----CCCCcceEEEEEEEeCCeEEE
Q 004094 427 SEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE-----ENEPTKGRILVFIVEDGKLQL 501 (774)
Q Consensus 427 ~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~-----e~~~~~Grl~v~~i~~~kl~~ 501 (774)
..++++|..+++.+..+.. ...+.++. +..+ ..+++++....... -..+..|.|++|+...+++..
T Consensus 325 ---~~v~v~d~~~~~~~~~~~~--~~~~~~~~---~s~d-g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 325 ---SKIEVYDLKEKKVQKSIPV--FDKPNTIA---LSPD-GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE 395 (433)
T ss_dssp ---TEEEEEETTTTEEEEEEEC--SSSEEEEE---ECTT-SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred ---CEEEEEECCCCcEEEEecC--CCCCCeEE---EcCC-CCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE
Confidence 3799999998888877653 34455543 4433 45667666421100 011235899999987665443
Q ss_pred EEEEeecCceeEeccc-cC-eEEEEE--CCEEEEEEe
Q 004094 502 IAEKETKGAVYSLNAF-NG-KLLAAI--NQKIQLYKW 534 (774)
Q Consensus 502 ~~~~~~~g~v~~i~~~-~~-~lv~~~--g~~l~v~~~ 534 (774)
.. ...+.+.+++-- +| +|+++. .+.|++|++
T Consensus 396 ~~--~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~ 430 (433)
T 3bws_A 396 FW--EAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRR 430 (433)
T ss_dssp EE--ECSSSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred Ee--cCCCCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence 33 335677777654 44 455554 578888875
No 90
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=97.58 E-value=0.064 Score=55.09 Aligned_cols=79 Identities=10% Similarity=-0.034 Sum_probs=51.7
Q ss_pred CCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCee--EEecCCC-ccCceeEEeeeecCeeEEEEEeCCCc
Q 004094 214 LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLI--TKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGH 290 (774)
Q Consensus 214 l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~--~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~ 290 (774)
....|+|+++.+ ...+++.|.. +|.|++|++.+.... ....+.. .....++.+.+..+..+|+.|..||.
T Consensus 10 H~~~v~~~~~~~------~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 10 HDDLVHDVVYDF------YGRHVATCSS-DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CSSCEEEEEECS------SSSEEEEEET-TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cccceeEEEEcC------CCCEEEEeeC-CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 457899999975 2567888877 999999999754221 1111211 12334444433213567999999999
Q ss_pred EEEEEEecC
Q 004094 291 LLNFLLNMK 299 (774)
Q Consensus 291 l~~y~~~~~ 299 (774)
+..|.+...
T Consensus 83 v~vwd~~~~ 91 (351)
T 3f3f_A 83 VKLWEEDPD 91 (351)
T ss_dssp EEEEEECTT
T ss_pred EEEEecCCC
Confidence 999998764
No 91
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=97.58 E-value=0.1 Score=60.33 Aligned_cols=244 Identities=15% Similarity=0.166 Sum_probs=129.1
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCe---eEEecCCC-ccCceeEEeeeecCeeEEEEEeCC
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNL---ITKEHLGG-EIIPRSVLLCAFEGISYLLCALGD 288 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~---~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~ 288 (774)
.+...|+|+++.+. ...+++.|.. |++|++|++..... .....+.. .....++.+.+ +..+|+.|..|
T Consensus 380 ~H~~~V~~v~~~~~-----~~~~l~s~s~-D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~g~~l~sgs~D 451 (694)
T 3dm0_A 380 AHTDMVTAIATPID-----NADIIVSASR-DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS--DGQFALSGSWD 451 (694)
T ss_dssp CCSSCEEEEECCTT-----CCSEEEEEET-TSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT--TSSEEEEEETT
T ss_pred cCCceeEEEEecCC-----CCCEEEEEeC-CCcEEEEEccCCCcccccccceecCCCCcEEEEEECC--CCCEEEEEeCC
Confidence 35677999988642 2456776766 99999999865321 11111211 11233443332 45678999999
Q ss_pred CcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEec-CCCeEEEecCCcEEEeeec-----ccCceeeecc
Q 004094 289 GHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYSSNKKLLYSNVN-----LKEVSHMCPF 362 (774)
Q Consensus 289 G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~l~~~~~~~~~~~~~-----~~~i~~~~~f 362 (774)
|.+..|.+.. +.. .+...--..+|.=..+.. +...++..| ++...++...+...+.... ...+.+ ..|
T Consensus 452 g~v~vwd~~~--~~~--~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~-~~~ 525 (694)
T 3dm0_A 452 GELRLWDLAA--GVS--TRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC-VRF 525 (694)
T ss_dssp SEEEEEETTT--TEE--EEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEE-EEE
T ss_pred CcEEEEECCC--Ccc--eeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEE-EEE
Confidence 9999987653 211 111111123333223322 223344333 3344444333222111110 011222 234
Q ss_pred cCCCCCCcEEEE-eCCeEEEEEEcCCCCeEEEEEeC-CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCc
Q 004094 363 NSAAFPDSLAIA-KEGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTF 440 (774)
Q Consensus 363 ~~~~~~~~l~~~-~~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~ 440 (774)
+.......++.. .++.+++..+.... ..+.+.- ...+..++++|+.+.++.++.+. .|++.|..+.
T Consensus 526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~--~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg----------~i~iwd~~~~ 593 (694)
T 3dm0_A 526 SPNTLQPTIVSASWDKTVKVWNLSNCK--LRSTLAGHTGYVSTVAVSPDGSLCASGGKDG----------VVLLWDLAEG 593 (694)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEETTS----------BCEEEETTTT
T ss_pred eCCCCcceEEEEeCCCeEEEEECCCCc--EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC----------eEEEEECCCC
Confidence 322222234433 37889988876542 2223322 34577899999988777766543 7999999888
Q ss_pred eEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeE
Q 004094 441 EFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKL 499 (774)
Q Consensus 441 ~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl 499 (774)
+.+.++ ..+..+.+++ +.. ...+++.|+ .+.|.+|++..+++
T Consensus 594 ~~~~~~--~~~~~v~~~~---~sp-~~~~l~~~~-----------~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 594 KKLYSL--EANSVIHALC---FSP-NRYWLCAAT-----------EHGIKIWDLESKSI 635 (694)
T ss_dssp EEEECC--BCSSCEEEEE---ECS-SSSEEEEEE-----------TTEEEEEETTTTEE
T ss_pred ceEEEe--cCCCcEEEEE---EcC-CCcEEEEEc-----------CCCEEEEECCCCCC
Confidence 876543 4455555554 443 345565554 13488998876543
No 92
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.58 E-value=0.11 Score=54.76 Aligned_cols=291 Identities=13% Similarity=0.055 Sum_probs=152.7
Q ss_pred CcEEEEEECC---CEEEEEEcCCeEEEEEEcCceEEEE-EeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEE
Q 004094 175 YSVNVATANA---SQVLLATGGGHLVYLEIGDGILTEV-KHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFS 250 (774)
Q Consensus 175 ~~I~~a~~~~---~~lvv~~~~~~~~~~~~~~~~l~~~-~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~ 250 (774)
..|.+.+.++ ..++.+..++.+..+.+..++.... ........|.|+++.+. ....++.|.. ++.+.+|+
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~~l~s~~~-d~~i~iwd 147 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF-----NTNQLFVSSI-RGATTLRD 147 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT-----EEEEEEEEET-TTEEEEEE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC-----CCCEEEEEeC-CCEEEEEE
Confidence 4577776552 4666666678888878765443332 22346788999999641 1466777766 99999999
Q ss_pred CCCCCeeEEecCC-CccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceE
Q 004094 251 LPDLNLITKEHLG-GEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHV 329 (774)
Q Consensus 251 l~~~~~~~~~~l~-~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v 329 (774)
+.+.......... ......++.+.+ +..+|++|..||.+..|.+. +.. .........++.-..+..++...+
T Consensus 148 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~---~~~--~~~~~~h~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 148 FSGSVIQVFAKTDSWDYWYCCVDVSV--SRQMLATGDSTGRLLLLGLD---GHE--IFKEKLHKAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp TTSCEEEEEECCCCSSCCEEEEEEET--TTTEEEEEETTSEEEEEETT---SCE--EEEEECSSSCEEEEEECSSCTTEE
T ss_pred CCCCceEEEeccCCCCCCeEEEEECC--CCCEEEEECCCCCEEEEECC---CCE--EEEeccCCCcEEEEEECCCCCCEE
Confidence 9863221111111 011234444432 45689999999999998863 211 111111223443333322222133
Q ss_pred EEecCCC-eEEEecC-----CcEEEeeecccCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCCCCeEEEEE-----eC
Q 004094 330 FAASDRP-TVIYSSN-----KKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSI-----PL 397 (774)
Q Consensus 330 ~~~~~~p-~~l~~~~-----~~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i-----~l 397 (774)
+..+..- ..++.-+ +.+....-....+.+++ |+. ...+.++... ++.+++..+.+......-.- .-
T Consensus 221 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~s~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 298 (383)
T 3ei3_B 221 ATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAY-FNP-TDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ 298 (383)
T ss_dssp EEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEE-ECT-TTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred EEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEE-EcC-CCCCEEEEEcCCCcEEEEECCCCccccccccccccccc
Confidence 3333333 3333322 22211111223343333 221 0122344333 68899999876543211111 11
Q ss_pred CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeee
Q 004094 398 GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYV 477 (774)
Q Consensus 398 ~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~ 477 (774)
...+-+..++|....++++.+..... -......|+++|..+.+.+..+.....+.+.++.. +.. ...+++.|.
T Consensus 299 ~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~--~s~-~g~~l~s~s--- 371 (383)
T 3ei3_B 299 HLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNK--FSP-TGDVLASGM--- 371 (383)
T ss_dssp TSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEE--ECT-TSSEEEEEE---
T ss_pred cccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEE--Eec-CccEEEEec---
Confidence 13444567888877777665432111 11123579999999888888776544343333322 333 345777663
Q ss_pred CCCCCCCcceEEEEEEEe
Q 004094 478 LPEENEPTKGRILVFIVE 495 (774)
Q Consensus 478 ~~~e~~~~~Grl~v~~i~ 495 (774)
. |.|.+|++.
T Consensus 372 d--------~~i~iw~~~ 381 (383)
T 3ei3_B 372 G--------FNILIWNRE 381 (383)
T ss_dssp T--------TEEEEEECC
T ss_pred C--------CcEEEEecC
Confidence 1 789999864
No 93
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.57 E-value=0.029 Score=60.88 Aligned_cols=219 Identities=13% Similarity=0.145 Sum_probs=132.2
Q ss_pred CCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceE
Q 004094 409 QSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGR 488 (774)
Q Consensus 409 ~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gr 488 (774)
+.+.++.++.+ ..|+++|..+.+.+..+.- ....+.++. + ...++++|+ ..|.
T Consensus 142 d~~~l~~g~~d----------g~i~iwd~~~~~~~~~~~~-h~~~v~~l~---~---~~~~l~sg~----------~dg~ 194 (435)
T 1p22_A 142 DDQKIVSGLRD----------NTIKIWDKNTLECKRILTG-HTGSVLCLQ---Y---DERVIITGS----------SDST 194 (435)
T ss_dssp CSSEEEEEESS----------SCEEEEESSSCCEEEEECC-CSSCEEEEE---C---CSSEEEEEE----------TTSC
T ss_pred CCCEEEEEeCC----------CeEEEEeCCCCeEEEEEcC-CCCcEEEEE---E---CCCEEEEEc----------CCCe
Confidence 44555555543 3799999988887766553 334556654 2 246888886 3489
Q ss_pred EEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEE-CCEEEEEEeeecCCCchhhhhhcccccc-eEEEEEEEeCCEE
Q 004094 489 ILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAI-NQKIQLYKWMLRDDGTRELQSECGHHGH-ILALYVQTRGDFI 566 (774)
Q Consensus 489 l~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~-g~~l~v~~~~~~~~~~~~l~~~~~~~~~-~~~~~l~~~~~~I 566 (774)
|.+|++..++..... ....++|++++.-++.++++. ++.|++|++.. + ..+........+ ..+.++...++++
T Consensus 195 i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~---~-~~~~~~~~~~~~~~~v~~~~~~~~~l 269 (435)
T 1p22_A 195 VRVWDVNTGEMLNTL-IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS---P-TDITLRRVLVGHRAAVNVVDFDDKYI 269 (435)
T ss_dssp EEEEESSSCCEEEEE-CCCCSCEEEEECCTTEEEEEETTSCEEEEECSS---S-SCCEEEEEECCCSSCEEEEEEETTEE
T ss_pred EEEEECCCCcEEEEE-cCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCC---C-CCceeeeEecCCCCcEEEEEeCCCEE
Confidence 999999866543222 245788999986666665544 47889987632 1 111100111111 2345566789999
Q ss_pred EEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccCCcEEEEeeCCCCCCccccceeeeEEEEE-c
Q 004094 567 VVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYH-L 645 (774)
Q Consensus 567 ~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~-l 645 (774)
++|..-..+.+ |+....+....-. .+...++++.+ +.+.++++..+|.+.+++.... ..+ ..+. .
T Consensus 270 ~s~~~dg~i~v--wd~~~~~~~~~~~-~~~~~v~~~~~-~~~~l~~g~~dg~i~iwd~~~~-------~~~---~~~~~h 335 (435)
T 1p22_A 270 VSASGDRTIKV--WNTSTCEFVRTLN-GHKRGIACLQY-RDRLVVSGSSDNTIRLWDIECG-------ACL---RVLEGH 335 (435)
T ss_dssp EEEETTSEEEE--EETTTCCEEEEEE-CCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTC-------CEE---EEECCC
T ss_pred EEEeCCCeEEE--EECCcCcEEEEEc-CCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCCC-------CEE---EEEeCC
Confidence 99998888776 5554443322221 23445666655 6667888889999999998642 111 1121 2
Q ss_pred CcccceEEeeeeeecCCCCCCCCccEEEEEccccceEEEEe
Q 004094 646 GEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIAS 686 (774)
Q Consensus 646 g~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gsi~~i~~ 686 (774)
...|+++.. ....++.|+.+|.|...-.
T Consensus 336 ~~~v~~~~~-------------~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 336 EELVRCIRF-------------DNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp SSCEEEEEC-------------CSSEEEEEETTSCEEEEEH
T ss_pred cCcEEEEEe-------------cCCEEEEEeCCCcEEEEEC
Confidence 233444321 2456888899999987653
No 94
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=97.56 E-value=0.11 Score=54.15 Aligned_cols=270 Identities=13% Similarity=0.100 Sum_probs=136.4
Q ss_pred CEEEEEEcCCeEEEEEEcCce-----EEEE-EeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeE
Q 004094 185 SQVLLATGGGHLVYLEIGDGI-----LTEV-KHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLIT 258 (774)
Q Consensus 185 ~~lvv~~~~~~~~~~~~~~~~-----l~~~-~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~ 258 (774)
..++.+..++.+..+.+..++ -... .-......|+|+++.+ ...+++.|.+ |+.+++|++.+.+.+.
T Consensus 40 ~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~------~~~~l~s~s~-D~~v~lwd~~~~~~~~ 112 (343)
T 2xzm_R 40 PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ------ENCFAISSSW-DKTLRLWDLRTGTTYK 112 (343)
T ss_dssp CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS------STTEEEEEET-TSEEEEEETTSSCEEE
T ss_pred CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC------CCCEEEEEcC-CCcEEEEECCCCcEEE
Confidence 355555556777777765311 1111 1123457799999965 2467777777 9999999998766543
Q ss_pred EecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCC---------cceE
Q 004094 259 KEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKN---------TTHV 329 (774)
Q Consensus 259 ~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~---------~~~v 329 (774)
...-- .....++.+.+ +..+|+.|..||.+..|.+... .........-...++.-..+...+ ...+
T Consensus 113 ~~~~h-~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l 187 (343)
T 2xzm_R 113 RFVGH-QSEVYSVAFSP--DNRQILSAGAEREIKLWNILGE--CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYF 187 (343)
T ss_dssp EEECC-CSCEEEEEECS--STTEEEEEETTSCEEEEESSSC--EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEE
T ss_pred EEcCC-CCcEEEEEECC--CCCEEEEEcCCCEEEEEeccCC--ceeeeecccCCCceeeeeeeccccccccccCCCCCEE
Confidence 21110 11234444432 3457889999999999986421 000000000011222222221111 0122
Q ss_pred EEec-CCCeEEEecCCcEEEe-eecccCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCCCCeEEEEEeCCCcccEEEE
Q 004094 330 FAAS-DRPTVIYSSNKKLLYS-NVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLGEHPRRICH 406 (774)
Q Consensus 330 ~~~~-~~p~~l~~~~~~~~~~-~~~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y 406 (774)
+..+ +....++..+...... .-....+.+++ |+. ....++... ++.+++..+.... ...+....+..+..+++
T Consensus 188 ~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~-~s~--~g~~l~sgs~dg~v~iwd~~~~~-~~~~~~~~~~~v~~v~~ 263 (343)
T 2xzm_R 188 ASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLS-ISP--NGKYIATGGKDKKLLIWDILNLT-YPQREFDAGSTINQIAF 263 (343)
T ss_dssp EEEETTSEEEEEETTTEEEEEEECCSSCEEEEE-ECT--TSSEEEEEETTCEEEEEESSCCS-SCSEEEECSSCEEEEEE
T ss_pred EEEcCCCEEEEEcCCCceeEEEcCccccceEEE-ECC--CCCEEEEEcCCCeEEEEECCCCc-ccceeecCCCcEEEEEE
Confidence 2223 2223333322222111 11112333332 321 112344333 6789998884332 22344455677889999
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC------------CCceEEEEEEEEEcCCCceEEEEEe
Q 004094 407 QEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD------------TFEYGCSILSCSFSDDSNVYYCVGT 474 (774)
Q Consensus 407 ~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~------------~~E~~~si~~~~~~~~~~~~i~VGT 474 (774)
+|....+++.. +. .++++|..+.+......++ ....+.++. +.. ..++++.|+
T Consensus 264 sp~~~~la~~~-d~----------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~sp-~g~~l~sg~ 328 (343)
T 2xzm_R 264 NPKLQWVAVGT-DQ----------GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLA---WNA-LGKKLFAGF 328 (343)
T ss_dssp CSSSCEEEEEE-SS----------CEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEE---ECS-SSCCEEEEE
T ss_pred CCCCCEEEEEC-CC----------CEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEE---ECC-CCCeEEEec
Confidence 99877654433 22 5888887665543322232 112244443 443 245777776
Q ss_pred eeeCCCCCCCcceEEEEEEEe
Q 004094 475 AYVLPEENEPTKGRILVFIVE 495 (774)
Q Consensus 475 ~~~~~~e~~~~~Grl~v~~i~ 495 (774)
..|.|.+|++.
T Consensus 329 ----------~Dg~v~~w~~~ 339 (343)
T 2xzm_R 329 ----------TDGVIRTFSFE 339 (343)
T ss_dssp ----------TTSEEEEEEEE
T ss_pred ----------CCceEEEEEEE
Confidence 33899999875
No 95
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.042 Score=59.85 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=86.1
Q ss_pred EEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe--CC-eEEEEEEEeecCceeEeccc-cCe-EEEEEC-CEEEEEEe
Q 004094 461 SFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE--DG-KLQLIAEKETKGAVYSLNAF-NGK-LLAAIN-QKIQLYKW 534 (774)
Q Consensus 461 ~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~--~~-kl~~~~~~~~~g~v~~i~~~-~~~-lv~~~g-~~l~v~~~ 534 (774)
.+..+++.++++|. ..|.+.+|++. .+ .++.+......++|++++-- ++. |+++.. ..++++++
T Consensus 109 ~~s~d~~~l~~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 109 RLTSDESRLIACAD----------SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp EECTTSSEEEEEEG----------GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEcCCCCEEEEEEC----------CCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence 35544444446664 34899999998 54 35555555678899998855 344 444433 56666654
Q ss_pred eecCCCchh-hh-hhcccccceEEEEEEEe---CCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCe
Q 004094 535 MLRDDGTRE-LQ-SECGHHGHILALYVQTR---GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI 609 (774)
Q Consensus 535 ~~~~~~~~~-l~-~~~~~~~~~~~~~l~~~---~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~ 609 (774)
. +..... .. ....+...+..+...-. +++++.|+.-..|.++.+. ..+....-...+..+++++.|-+...
T Consensus 179 ~--~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~~h~~~v~~~~~sd~~~ 254 (450)
T 2vdu_B 179 N--SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP--QCFIVDKWLFGHKHFVSSICCGKDYL 254 (450)
T ss_dssp T--SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES--CTTCEEEECCCCSSCEEEEEECSTTE
T ss_pred C--CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC--CCceeeeeecCCCCceEEEEECCCCE
Confidence 2 111110 00 11111222333344445 5589999988888876553 33222211222445677777773334
Q ss_pred EEEEccCCcEEEEeeCC
Q 004094 610 YLGAENNFNLFTVRKNS 626 (774)
Q Consensus 610 ~l~~D~~gnl~~l~~~~ 626 (774)
++.+..+|.+.++....
T Consensus 255 l~s~~~d~~v~vwd~~~ 271 (450)
T 2vdu_B 255 LLSAGGDDKIFAWDWKT 271 (450)
T ss_dssp EEEEESSSEEEEEETTT
T ss_pred EEEEeCCCeEEEEECCC
Confidence 66777899999998754
No 96
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=97.47 E-value=0.14 Score=53.36 Aligned_cols=285 Identities=11% Similarity=0.069 Sum_probs=144.4
Q ss_pred cEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEE--EeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEEC
Q 004094 176 SVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEV--KHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL 251 (774)
Q Consensus 176 ~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~--~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l 251 (774)
.|...+.+ +..++.+..++.+..+.+..+..... ........|.|+++++ ...+++.|.+ |+.+.||++
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp------~g~~l~s~s~-D~~v~iw~~ 90 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP------CGNYLASASF-DATTCIWKK 90 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT------TSSEEEEEET-TSCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC------CCCEEEEEEC-CCcEEEEEc
Confidence 45555554 33555555567777777765443221 1234567899999975 2567888888 999999998
Q ss_pred CCCCeeEEecCCC-ccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEE
Q 004094 252 PDLNLITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVF 330 (774)
Q Consensus 252 ~~~~~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~ 330 (774)
..........+.. .....++.+.+ +..+|+.|..||.+..|++.... .........-...++.-..+..+ ...++
T Consensus 91 ~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~~p~-~~~l~ 166 (345)
T 3fm0_A 91 NQDDFECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEED-EYECVSVLNSHTQDVKHVVWHPS-QELLA 166 (345)
T ss_dssp CCC-EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTS-CEEEEEEECCCCSCEEEEEECSS-SSCEE
T ss_pred cCCCeEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCC-CeEEEEEecCcCCCeEEEEECCC-CCEEE
Confidence 6543211122221 11234444432 45678999999999999987532 11111111112233332233212 22333
Q ss_pred Eec-CCCeEEEec-CCcEE-Eeeec--ccCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCCC---C---------e-E
Q 004094 331 AAS-DRPTVIYSS-NKKLL-YSNVN--LKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQ---K---------L-H 391 (774)
Q Consensus 331 ~~~-~~p~~l~~~-~~~~~-~~~~~--~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~---~---------~-~ 391 (774)
..+ +....++.. .+... ...+. ...+.+++ |+. ..+.|+... ++.+++..+.... . + .
T Consensus 167 s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~-~sp--~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
T 3fm0_A 167 SASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA-FDP--SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243 (345)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE-ECT--TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred EEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEE-ECC--CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence 333 333334432 22211 11111 12333332 321 112344333 6788888763221 0 1 1
Q ss_pred EEEEe--CCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCce-------EEEEEECC-CCceEEEEEEEE
Q 004094 392 IRSIP--LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFE-------FISTYPLD-TFEYGCSILSCS 461 (774)
Q Consensus 392 ~~~i~--l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~-------~i~~~~~~-~~E~~~si~~~~ 461 (774)
+..+. -...+..+++++..+.++.++.+. .+++++..+.. .+....+. ....+.++.
T Consensus 244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~----------~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~--- 310 (345)
T 3fm0_A 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDD----------AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVA--- 310 (345)
T ss_dssp EEEECSSCSSCEEEEEECTTTCCEEEEETTS----------CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEE---
T ss_pred eEEecCCCCCcEEEEEEecCCCEEEEEeCCC----------eEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeE---
Confidence 11111 123466788898888888777653 57777643211 11112222 234455554
Q ss_pred EcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC
Q 004094 462 FSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG 497 (774)
Q Consensus 462 ~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~ 497 (774)
+..++..+++-|. ..|.|.+|++..+
T Consensus 311 ~~p~~~~~laS~s----------~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 311 WNPKEPGLLASCS----------DDGEVAFWKYQRP 336 (345)
T ss_dssp ECSSSTTEEEEEE----------TTSCEEEEEECC-
T ss_pred EeCCCceEEEEcC----------CCCcEEEEEecCC
Confidence 4433445777665 2389999998753
No 97
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=97.47 E-value=0.13 Score=52.83 Aligned_cols=279 Identities=12% Similarity=0.061 Sum_probs=149.5
Q ss_pred CcEEEEEECC---CEEEEEEcCCeEEEEEEcCce---EEEEE-eccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEE
Q 004094 175 YSVNVATANA---SQVLLATGGGHLVYLEIGDGI---LTEVK-HAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVR 247 (774)
Q Consensus 175 ~~I~~a~~~~---~~lvv~~~~~~~~~~~~~~~~---l~~~~-~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~ 247 (774)
..|.+.+.++ ..++-+..++.+..+.+..++ -.... -......|+|+++.+ ...+++.|.. |+.+.
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~------dg~~l~s~~~-d~~i~ 111 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS------DGQFALSGSW-DGTLR 111 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT------TSSEEEEEET-TSEEE
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC------CCCEEEEEcc-cccce
Confidence 3577777653 344445556788888876521 11111 123467899999965 2567888877 99999
Q ss_pred EEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecC-CCCeEEEEEEeCCc
Q 004094 248 IFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLG-TQPITLRTFSSKNT 326 (774)
Q Consensus 248 i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG-~~pv~l~~~~~~~~ 326 (774)
+|............... ....... ......+|+.|..||.+..|..... .. ......+ ..++....+...+.
T Consensus 112 ~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~l~s~s~d~~~~~~d~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 112 LWDLTTGTTTRRFVGHT-KDVLSVA--FSSDNRQIVSGSRDKTIKLWNTLGV--CK--YTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp EEETTTTEEEEEEECCS-SCEEEEE--ECTTSSCEEEEETTSCEEEECTTSC--EE--EEECSSSCSSCEEEEEECSCSS
T ss_pred EEeecccceeeeecCCC-CceeEEE--EeecCccceeecCCCeEEEEEeCCC--ce--EEEEeccccCcccceEEccCCC
Confidence 99987755433222211 1111111 1223467888999999988754321 00 0001111 23344444433333
Q ss_pred ceEEEec-C-CCeEEEecC-CcEEEe-eecccCceeeecccCCCCCCcEEEE-eCCeEEEEEEcCCCCeEEEEEeCCCcc
Q 004094 327 THVFAAS-D-RPTVIYSSN-KKLLYS-NVNLKEVSHMCPFNSAAFPDSLAIA-KEGELTIGTIDDIQKLHIRSIPLGEHP 401 (774)
Q Consensus 327 ~~v~~~~-~-~p~~l~~~~-~~~~~~-~~~~~~i~~~~~f~~~~~~~~l~~~-~~~~l~i~~l~~~~~~~~~~i~l~~tp 401 (774)
..+++.+ . ....++..+ ++.... .-....+.+++ |+. ..+.++.. .++.+++..+... -..+.+.-...+
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~-~s~--~~~~l~s~s~Dg~i~iwd~~~~--~~~~~~~~~~~v 259 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVT-VSP--DGSLCASGGKDGQAMLWDLNEG--KHLYTLDGGDII 259 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE-ECT--TSSEEEEEETTCEEEEEETTTT--EEEEEEECSSCE
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEE-ECC--CCCEEEEEeCCCeEEEEEeccC--ceeeeecCCceE
Confidence 3444433 3 333344333 332211 11223444443 321 11223333 3678888877654 345566667778
Q ss_pred cEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC--------CCceEEEEEEEEEcCCCceEEEEE
Q 004094 402 RRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD--------TFEYGCSILSCSFSDDSNVYYCVG 473 (774)
Q Consensus 402 ~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~--------~~E~~~si~~~~~~~~~~~~i~VG 473 (774)
..+.++|... +++++.+ ..|++.|..+...+..+.-+ ....+++++ +.. ..++|+.|
T Consensus 260 ~~~~~~~~~~-~~~~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~---~s~-dg~~l~sg 324 (340)
T 4aow_A 260 NALCFSPNRY-WLCAATG----------PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA---WSA-DGQTLFAG 324 (340)
T ss_dssp EEEEECSSSS-EEEEEET----------TEEEEEETTTTEEEEEECCC-------CCCCCEEEEE---ECT-TSSEEEEE
T ss_pred EeeecCCCCc-eeeccCC----------CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEE---ECC-CCCEEEEE
Confidence 8888888654 4444433 37999998887776654321 223355543 443 34577777
Q ss_pred eeeeCCCCCCCcceEEEEEEEeCC
Q 004094 474 TAYVLPEENEPTKGRILVFIVEDG 497 (774)
Q Consensus 474 T~~~~~~e~~~~~Grl~v~~i~~~ 497 (774)
. ..|.|++|++..+
T Consensus 325 s----------~Dg~v~iW~~~tG 338 (340)
T 4aow_A 325 Y----------TDNLVRVWQVTIG 338 (340)
T ss_dssp E----------TTSCEEEEEEEC-
T ss_pred e----------CCCEEEEEeCCCc
Confidence 6 2389999998743
No 98
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=97.45 E-value=0.12 Score=52.85 Aligned_cols=201 Identities=10% Similarity=0.106 Sum_probs=115.5
Q ss_pred CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCc----eEEEEEECCCCceEEEEEEEEEcCC-CceEEEEE
Q 004094 399 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTF----EFISTYPLDTFEYGCSILSCSFSDD-SNVYYCVG 473 (774)
Q Consensus 399 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~----~~i~~~~~~~~E~~~si~~~~~~~~-~~~~i~VG 473 (774)
..++.++|+|+.+.++.++.+ ..|+++|..+. +.+..+. .....+.+++ +... ...+++.|
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~---~~~~~d~~~l~s~ 77 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSD----------QHIKVFKLDKDTSNWELSDSWR-AHDSSIVAID---WASPEYGRIIASA 77 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETT----------SEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEE---ECCGGGCSEEEEE
T ss_pred cceeEEEEcCCCCEEEEeeCC----------CeEEEEECCCCCCcceecceec-cCCCcEEEEE---EcCCCCCCEEEEE
Confidence 457789999988877776644 37888887544 3333333 2344566654 3322 25678877
Q ss_pred eeeeCCCCCCCcceEEEEEEEeCC-------eEEEEEEE-eecCceeEecccc---Ce-EEEEE-CCEEEEEEeeecCCC
Q 004094 474 TAYVLPEENEPTKGRILVFIVEDG-------KLQLIAEK-ETKGAVYSLNAFN---GK-LLAAI-NQKIQLYKWMLRDDG 540 (774)
Q Consensus 474 T~~~~~~e~~~~~Grl~v~~i~~~-------kl~~~~~~-~~~g~v~~i~~~~---~~-lv~~~-g~~l~v~~~~~~~~~ 540 (774)
+ ..|.|.+|++..+ ..+.+... ...++|++++-.. +. |+++. ...|++|++.....
T Consensus 78 ~----------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~- 146 (351)
T 3f3f_A 78 S----------YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD- 146 (351)
T ss_dssp E----------TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC-
T ss_pred c----------CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH-
Confidence 6 3489999999853 22333333 4688999998653 44 44433 46889987632110
Q ss_pred chhhhh------hccc--ccceEEEEEEE--e---CCEEEEEeccccEEEEEEEccCCeEEEEe-ccCCcceeEEEEEee
Q 004094 541 TRELQS------ECGH--HGHILALYVQT--R---GDFIVVGDLMKSISLLIYKHEEGAIEERA-RDYNANWMSAVEILD 606 (774)
Q Consensus 541 ~~~l~~------~~~~--~~~~~~~~l~~--~---~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a-~D~~~~~v~~~~~l~ 606 (774)
...+.. .... .....+.++.. . ++++++|.....+. + +.....++..+. -..+...++++.+-.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~h~~~i~~~~~~p 224 (351)
T 3f3f_A 147 LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAII-Y-QRGKDGKLHVAAKLPGHKSLIRSISWAP 224 (351)
T ss_dssp TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEE-E-EECTTSCEEEEEECCCCCSCEEEEEECC
T ss_pred hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEE-E-EccCCCceeeeeecCCCCcceeEEEECC
Confidence 000000 0000 00111223333 2 77888888887763 3 333344433222 233456788888776
Q ss_pred CC-----eEEEEccCCcEEEEeeCC
Q 004094 607 DD-----IYLGAENNFNLFTVRKNS 626 (774)
Q Consensus 607 ~~-----~~l~~D~~gnl~~l~~~~ 626 (774)
++ .++.+..+|.+.+++...
T Consensus 225 ~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 225 SIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp CSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred CCCCcceEEEEEcCCCeEEEEeCCC
Confidence 64 466788899999999864
No 99
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=97.42 E-value=0.027 Score=58.03 Aligned_cols=141 Identities=14% Similarity=0.047 Sum_probs=85.2
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCC---cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCC-
Q 004094 376 EGELTIGTIDDIQKLHIRSIPLGE---HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF- 451 (774)
Q Consensus 376 ~~~l~i~~l~~~~~~~~~~i~l~~---tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~- 451 (774)
++.+.+..+.+ .-..++++++. .|+.++++|+.+.++++.... ..|.++|..+.+.+..+.+...
T Consensus 10 ~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~---------~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 10 PDKLVVIDTEK--MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS---------ESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp TTEEEEEETTT--TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT---------TEEEEEETTTCCEEEEEECCBTT
T ss_pred CCeEEEEECCC--CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCC---------CeEEEEECCCCCeEeeEEcCCcc
Confidence 56666665543 33567788888 799999999988776665432 3799999999888887776431
Q ss_pred ---ceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCC--cceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCe-EEEE
Q 004094 452 ---EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEP--TKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGK-LLAA 524 (774)
Q Consensus 452 ---E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~--~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~-lv~~ 524 (774)
+.+.++ .+..+++ +++++......+.... ..+.|++|++..++... .......+.+++-- +|. |+++
T Consensus 79 ~~~~~~~~~---~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~~ 152 (337)
T 1pby_B 79 ERVKSLFGA---ALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK--AFEAPRQITMLAWARDGSKLYGL 152 (337)
T ss_dssp EEEECTTCE---EECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE--EEECCSSCCCEEECTTSSCEEEE
T ss_pred cccccccce---EECCCCC-EEEEEecccccccccccccCceEEEEECCCCcEEE--EEeCCCCcceeEECCCCCEEEEe
Confidence 123333 3444433 4555542210000111 35899999987665432 22334556665532 444 6666
Q ss_pred ECCEEEEEEe
Q 004094 525 INQKIQLYKW 534 (774)
Q Consensus 525 ~g~~l~v~~~ 534 (774)
++.|++++.
T Consensus 153 -~~~i~~~d~ 161 (337)
T 1pby_B 153 -GRDLHVMDP 161 (337)
T ss_dssp -SSSEEEEET
T ss_pred -CCeEEEEEC
Confidence 778888774
No 100
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.16 Score=52.57 Aligned_cols=286 Identities=10% Similarity=0.063 Sum_probs=137.4
Q ss_pred CcEEEEEECCCEEEEEEcCCeEEEEEEcCce--EEEEEecc-CCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEEC
Q 004094 175 YSVNVATANASQVLLATGGGHLVYLEIGDGI--LTEVKHAQ-LEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL 251 (774)
Q Consensus 175 ~~I~~a~~~~~~lvv~~~~~~~~~~~~~~~~--l~~~~~~~-l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l 251 (774)
..|.+.+.+++.++.+..++.+..+.+..+. +....... ....|.|+++.+ ...+++.|.+ |+.++||++
T Consensus 15 ~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp------~~~~las~s~-D~~v~iw~~ 87 (330)
T 2hes_X 15 EKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP------HTSLLAAGSF-DSTVSIWAK 87 (330)
T ss_dssp SCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT------TSSEEEEEET-TSCEEEEEC
T ss_pred CceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC------CCCEEEEEeC-CCcEEEEEc
Confidence 4577777777766666667888877776532 22221122 566899999975 2567888888 999999998
Q ss_pred CCCC-----eeEEecCCC-ccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCC
Q 004094 252 PDLN-----LITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKN 325 (774)
Q Consensus 252 ~~~~-----~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~ 325 (774)
.... ......+.. .....++.+.+ +..+|+.|..||.+..|.+..........+...--..+|.-..+.. +
T Consensus 88 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~ 164 (330)
T 2hes_X 88 EESADRTFEMDLLAIIEGHENEVKGVAWSN--DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-S 164 (330)
T ss_dssp -------CCCEEEEEEC----CEEEEEECT--TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-S
T ss_pred ccCcCccccceeEEEEcCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-C
Confidence 5311 101111211 01223333332 4568999999999999987532111111111111123333223321 2
Q ss_pred cceEEEec-CCCeEEEec-CCcE-EEeee--cccCceeeecccCCCCCCcEEEE-eCCeEEEEEEcCCC-----Ce-EEE
Q 004094 326 TTHVFAAS-DRPTVIYSS-NKKL-LYSNV--NLKEVSHMCPFNSAAFPDSLAIA-KEGELTIGTIDDIQ-----KL-HIR 393 (774)
Q Consensus 326 ~~~v~~~~-~~p~~l~~~-~~~~-~~~~~--~~~~i~~~~~f~~~~~~~~l~~~-~~~~l~i~~l~~~~-----~~-~~~ 393 (774)
...++..| +....++.. .+.. ....+ +...+.+++ |+.......++.. .++.+++..+.... .+ ...
T Consensus 165 ~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 243 (330)
T 2hes_X 165 EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSD-FDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEA 243 (330)
T ss_dssp SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE-ECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEE-ecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEee
Confidence 22333333 333334422 2211 11111 112333322 3221111123333 36788888875431 11 222
Q ss_pred EEe--CCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCc--eEEEEEECCCCc-eEEEEEEEEEcC-CCc
Q 004094 394 SIP--LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTF--EFISTYPLDTFE-YGCSILSCSFSD-DSN 467 (774)
Q Consensus 394 ~i~--l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~--~~i~~~~~~~~E-~~~si~~~~~~~-~~~ 467 (774)
.++ -...+..+++++. +.++.++.+ ..|++.|..+. +.+......... .+.++. +.. +..
T Consensus 244 ~~~~~h~~~v~~v~~s~~-~~l~s~~~d----------g~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~---~~~~~~~ 309 (330)
T 2hes_X 244 ILPDVHKRQVYNVAWGFN-GLIASVGAD----------GVLAVYEEVDGEWKVFAKRALCHGVYEINVVK---WLELNGK 309 (330)
T ss_dssp ECCSCCSSCEEEEEECTT-SCEEEEETT----------SCEEEEEEETTEEEEEEEESCTTTTSCEEEEE---EC-----
T ss_pred ecccccccceEEEEEcCC-CEEEEEeCC----------CEEEEEEcCCCceEEEeccccccccceEEEEE---EecCCCc
Confidence 222 1345677888854 344444433 36888876544 333332222222 455554 322 134
Q ss_pred eEEEEEeeeeCCCCCCCcceEEEEEEEe
Q 004094 468 VYYCVGTAYVLPEENEPTKGRILVFIVE 495 (774)
Q Consensus 468 ~~i~VGT~~~~~~e~~~~~Grl~v~~i~ 495 (774)
.+|+.|. ..|.|.+|++.
T Consensus 310 ~~las~s----------~Dg~v~~W~~~ 327 (330)
T 2hes_X 310 TILATGG----------DDGIVNFWSLE 327 (330)
T ss_dssp CCEEEEE----------TTSEEEEEEC-
T ss_pred eEEEEec----------CCCcEEEEEec
Confidence 5666665 23889998764
No 101
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.40 E-value=0.0041 Score=65.79 Aligned_cols=218 Identities=10% Similarity=0.067 Sum_probs=121.5
Q ss_pred CCeEEEEEEcCCCCeEEEEEeC---CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCc
Q 004094 376 EGELTIGTIDDIQKLHIRSIPL---GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE 452 (774)
Q Consensus 376 ~~~l~i~~l~~~~~~~~~~i~l---~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E 452 (774)
++.+++..+.+.......+... ...++.++++|+.+.++.++.+. .|++.|..+.+.+..+.-.. .
T Consensus 114 dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg----------~v~iwd~~~~~~~~~~~~h~-~ 182 (357)
T 4g56_B 114 SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF----------SVKVWDLSQKAVLKSYNAHS-S 182 (357)
T ss_dssp TSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS----------CEEEEETTTTEEEEEECCCS-S
T ss_pred CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC----------eEEEEECCCCcEEEEEcCCC-C
Confidence 4555555554433222222221 24577899999988777766543 69999999988887765432 3
Q ss_pred eEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEE-EEEEEeecCceeEeccc--cCeEEEE-E-CC
Q 004094 453 YGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQ-LIAEKETKGAVYSLNAF--NGKLLAA-I-NQ 527 (774)
Q Consensus 453 ~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~-~~~~~~~~g~v~~i~~~--~~~lv~~-~-g~ 527 (774)
.+.++. +..++..+++.|. ..|.|.+|++..++.. .+......++|++++-. ++.++++ . ..
T Consensus 183 ~v~~v~---~s~~~~~~~~s~~----------~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~ 249 (357)
T 4g56_B 183 EVNCVA---ACPGKDTIFLSCG----------EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG 249 (357)
T ss_dssp CEEEEE---ECTTCSSCEEEEE----------TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS
T ss_pred CEEEEE---EccCCCceeeeec----------cCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc
Confidence 455554 4444455666554 2378999987654322 22222346678888754 4555543 2 46
Q ss_pred EEEEEEeeecCCCchhhhhhcccccceEEEEEEE--eC-CEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEE
Q 004094 528 KIQLYKWMLRDDGTRELQSECGHHGHILALYVQT--RG-DFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEI 604 (774)
Q Consensus 528 ~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~--~~-~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~ 604 (774)
.|++|++. .+ +.+........ .+.++.. .+ ++|+.|..-..|.+ |+.+..++... -.+...|+++.|
T Consensus 250 ~i~~wd~~---~~-~~~~~~~~~~~--~v~~l~~sp~~~~~lasgs~D~~i~i--wd~~~~~~~~~--~~H~~~V~~vaf 319 (357)
T 4g56_B 250 NVSLVNIK---NP-DSAQTSAVHSQ--NITGLAYSYHSSPFLASISEDCTVAV--LDADFSEVFRD--LSHRDFVTGVAW 319 (357)
T ss_dssp CEEEEESS---CG-GGCEEECCCSS--CEEEEEECSSSSCCEEEEETTSCEEE--ECTTSCEEEEE--CCCSSCEEEEEE
T ss_pred ceeEEECC---CC-cEeEEEeccce--eEEEEEEcCCCCCEEEEEeCCCEEEE--EECCCCcEeEE--CCCCCCEEEEEE
Confidence 78887753 11 11111111122 2344444 34 46667776677765 56655554322 234567888877
Q ss_pred e--eCCeEEEEccCCcEEEEeeCCC
Q 004094 605 L--DDDIYLGAENNFNLFTVRKNSE 627 (774)
Q Consensus 605 l--~~~~~l~~D~~gnl~~l~~~~~ 627 (774)
- +...++.+..+|.+.++..+.+
T Consensus 320 sP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 320 SPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp CSSSTTEEEEEETTSCEEEEECC--
T ss_pred eCCCCCEEEEEcCCCeEEEEECCCC
Confidence 4 3345666778999999998654
No 102
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=97.39 E-value=0.084 Score=56.28 Aligned_cols=197 Identities=15% Similarity=0.226 Sum_probs=114.0
Q ss_pred CCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCC-----------------ceEEEEEE
Q 004094 397 LGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF-----------------EYGCSILS 459 (774)
Q Consensus 397 l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~-----------------E~~~si~~ 459 (774)
-...+..++|+|+.+.++.++.. .+++++..+.+.+..+.-... ..+.+
T Consensus 63 h~~~V~~v~fspdg~~la~g~~~-----------~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~--- 128 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGCNK-----------TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS--- 128 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEECBS-----------CEEEEETTTCCEEEEECC-----------------CCCCBEEE---
T ss_pred CCCEEEEEEECCCCCEEEEEcCC-----------cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEE---
Confidence 34567889999998877765522 477788777666554432111 11333
Q ss_pred EEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cC-eEEEEE-CCEEEEEEeee
Q 004094 460 CSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAI-NQKIQLYKWML 536 (774)
Q Consensus 460 ~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~-~lv~~~-g~~l~v~~~~~ 536 (774)
+.+..+ ..+++.|. ..|.|.+|++..+++.... ..+.++|++++-. ++ +|+.+. ..+|++|++.
T Consensus 129 v~~s~d-g~~l~s~~----------~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~- 195 (393)
T 1erj_A 129 VCFSPD-GKFLATGA----------EDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR- 195 (393)
T ss_dssp EEECTT-SSEEEEEE----------TTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-
T ss_pred EEECCC-CCEEEEEc----------CCCeEEEEECCCCcEEEEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC-
Confidence 335443 45777765 2378999998876644322 2467889998865 33 455444 3688887752
Q ss_pred cCCCchhhhhhcccccceEEEEEEE-eCCEEEEEeccccEEEEEEEccCCeEE-EEec-----cCCcceeEEEEEeeCCe
Q 004094 537 RDDGTRELQSECGHHGHILALYVQT-RGDFIVVGDLMKSISLLIYKHEEGAIE-ERAR-----DYNANWMSAVEILDDDI 609 (774)
Q Consensus 537 ~~~~~~~l~~~~~~~~~~~~~~l~~-~~~~I~vgD~~~Sv~~~~~~~~~~~l~-~~a~-----D~~~~~v~~~~~l~~~~ 609 (774)
.+. .............+.... .++++++|..-..+.+ |+.....+. .+.. ..+...++++.|-.++.
T Consensus 196 --~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~i--wd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~ 269 (393)
T 1erj_A 196 --TGQ--CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV--WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ 269 (393)
T ss_dssp --TTE--EEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEE--EETTTCCEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred --CCe--eEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEE--EECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC
Confidence 221 111111111222233332 4678999988888776 455444332 2211 22445788888775554
Q ss_pred -EEEEccCCcEEEEeeCC
Q 004094 610 -YLGAENNFNLFTVRKNS 626 (774)
Q Consensus 610 -~l~~D~~gnl~~l~~~~ 626 (774)
++.+..+|.+.+++...
T Consensus 270 ~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 270 SVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp EEEEEETTSEEEEEEC--
T ss_pred EEEEEeCCCEEEEEECCC
Confidence 66788899999998754
No 103
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.35 E-value=0.23 Score=53.17 Aligned_cols=282 Identities=13% Similarity=0.096 Sum_probs=147.7
Q ss_pred EEEEEEC-CCEEEEEEc-CCeEEEEEEcCceEEEEEe----ccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEE
Q 004094 177 VNVATAN-ASQVLLATG-GGHLVYLEIGDGILTEVKH----AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFS 250 (774)
Q Consensus 177 I~~a~~~-~~~lvv~~~-~~~~~~~~~~~~~l~~~~~----~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~ 250 (774)
+.+.+.+ +..++++.. ++.+..+.+..++...... ......+.++++.+ ....++.+ ..++.+.+|+
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~s~-~~d~~v~~~d 197 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE------HNELWVSQ-MQANAVHVFD 197 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG------GTEEEEEE-GGGTEEEEEE
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC------CCEEEEEE-CCCCEEEEEE
Confidence 3344444 344554443 4567776766555443211 12345788898853 13444444 4489999999
Q ss_pred CCCCCeeEEecCCCccCceeEEeeeecCeeEEE-EEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceE
Q 004094 251 LPDLNLITKEHLGGEIIPRSVLLCAFEGISYLL-CALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHV 329 (774)
Q Consensus 251 l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~-vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v 329 (774)
+.+.+.+...... ...|.++.+.+ +..+++ .+..+|.+..|.+.. +.. .+....+..|..+ .+. .+...+
T Consensus 198 ~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~--~~~--~~~~~~~~~~~~~-~~~-~~g~~l 268 (433)
T 3bws_A 198 LKTLAYKATVDLT-GKWSKILLYDP--IRDLVYCSNWISEDISVIDRKT--KLE--IRKTDKIGLPRGL-LLS-KDGKEL 268 (433)
T ss_dssp TTTCCEEEEEECS-SSSEEEEEEET--TTTEEEEEETTTTEEEEEETTT--TEE--EEECCCCSEEEEE-EEC-TTSSEE
T ss_pred CCCceEEEEEcCC-CCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCC--CcE--EEEecCCCCceEE-EEc-CCCCEE
Confidence 9876665433221 23456665543 234554 455789888876542 322 1111222222222 222 123345
Q ss_pred EEec---------CCCeEEEecC-CcEE-EeeecccCceeeecccCCCCCCcEEEE--eCCeEEEEEEcCCCCeEEEEEe
Q 004094 330 FAAS---------DRPTVIYSSN-KKLL-YSNVNLKEVSHMCPFNSAAFPDSLAIA--KEGELTIGTIDDIQKLHIRSIP 396 (774)
Q Consensus 330 ~~~~---------~~p~~l~~~~-~~~~-~~~~~~~~i~~~~~f~~~~~~~~l~~~--~~~~l~i~~l~~~~~~~~~~i~ 396 (774)
++.+ +....++..+ +++. ..+.. ..+.++ .|+. ..+.++++ .++.+.+..+.. .-..+.++
T Consensus 269 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~-~~~~--~g~~l~~~~~~~~~v~v~d~~~--~~~~~~~~ 342 (433)
T 3bws_A 269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP-GNKRHI-VSGN--TENKIYVSDMCCSKIEVYDLKE--KKVQKSIP 342 (433)
T ss_dssp EEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE-ECEEEE-EECS--STTEEEEEETTTTEEEEEETTT--TEEEEEEE
T ss_pred EEEECCCCccccCCCeEEEEECCCCcEEeeccCC-CCcceE-EECC--CCCEEEEEecCCCEEEEEECCC--CcEEEEec
Confidence 5544 2223333322 3321 11111 122222 2221 11234444 267788877764 33456778
Q ss_pred CCCcccEEEEecCCCEEEEEEeccCCC-----CCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEE
Q 004094 397 LGEHPRRICHQEQSRTFAICSLKNQSC-----AEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYC 471 (774)
Q Consensus 397 l~~tp~~i~y~~~~~~~~v~~~~~~~~-----~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~ 471 (774)
.+..|..++++|+.+.+++++...... -.......|.++|..+++.+..+.. ...+.++. +..+ .++++
T Consensus 343 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~~---~s~d-g~~l~ 416 (433)
T 3bws_A 343 VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--GNQPTGLD---VSPD-NRYLV 416 (433)
T ss_dssp CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--SSSEEEEE---ECTT-SCEEE
T ss_pred CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC--CCCCceEE---EcCC-CCEEE
Confidence 888899999999988777776542100 0000124899999999998887765 34455543 4433 45666
Q ss_pred EEeeeeCCCCCCCcceEEEEEEEe
Q 004094 472 VGTAYVLPEENEPTKGRILVFIVE 495 (774)
Q Consensus 472 VGT~~~~~~e~~~~~Grl~v~~i~ 495 (774)
++.. ..|.+++|++.
T Consensus 417 ~~~~---------~d~~i~v~~~~ 431 (433)
T 3bws_A 417 ISDF---------LDHQIRVYRRD 431 (433)
T ss_dssp EEET---------TTTEEEEEEET
T ss_pred EEEC---------CCCeEEEEEec
Confidence 6552 24789999874
No 104
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.025 Score=66.44 Aligned_cols=201 Identities=14% Similarity=0.156 Sum_probs=121.4
Q ss_pred CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECC--CceEEEEEECCCCceEEEEEEEEEcCC-CceEEEEEee
Q 004094 399 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQ--TFEFISTYPLDTFEYGCSILSCSFSDD-SNVYYCVGTA 475 (774)
Q Consensus 399 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~--~~~~i~~~~~~~~E~~~si~~~~~~~~-~~~~i~VGT~ 475 (774)
..++.++|+|+.+.++.++.+ +.|++.|.. +++.+..+.- ....|.++. +..+ ...+++.|.
T Consensus 10 ~~V~~l~~s~dg~~latg~~d----------g~I~vwd~~~~~~~~~~~l~~-h~~~V~~l~---~s~~~~~~~l~s~s- 74 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSD----------KTIKIFEVEGETHKLIDTLTG-HEGPVWRVD---WAHPKFGTILASCS- 74 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETT----------TEEEEEEEETTEEEEEEEECC-CSSCEEEEE---ECCTTSCSEEEEEE-
T ss_pred ceeEEEEECCCCCeEEEEECC----------CcEEEEecCCCCCccceeccC-CcCceEEEE---ecCCCCCCEEEEEe-
Confidence 346678889888877766644 378888765 4444443332 234455554 4322 256788776
Q ss_pred eeCCCCCCCcceEEEEEEEeCCeEEEEEEE-eecCceeEecccc---Ce-EEEEE-CCEEEEEEeeecCCCchhhhhhcc
Q 004094 476 YVLPEENEPTKGRILVFIVEDGKLQLIAEK-ETKGAVYSLNAFN---GK-LLAAI-NQKIQLYKWMLRDDGTRELQSECG 549 (774)
Q Consensus 476 ~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~-~~~g~v~~i~~~~---~~-lv~~~-g~~l~v~~~~~~~~~~~~l~~~~~ 549 (774)
..|.|++|++..++.+.+... ...++|++++-.. +. ++++. ++.|++|++... ..........
T Consensus 75 ---------~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~--~~~~~~~~~~ 143 (753)
T 3jro_A 75 ---------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN--GTTSPIIIDA 143 (753)
T ss_dssp ---------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS--SCCCCEEEEC
T ss_pred ---------CCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC--CCcceeEeec
Confidence 348999999998876555443 4688999988653 44 44443 368899886421 1111111111
Q ss_pred cccceEEEEEEE---------------eCCEEEEEeccccEEEEEEEccCCeEEEEe-ccCCcceeEEEEEeeC---Ce-
Q 004094 550 HHGHILALYVQT---------------RGDFIVVGDLMKSISLLIYKHEEGAIEERA-RDYNANWMSAVEILDD---DI- 609 (774)
Q Consensus 550 ~~~~~~~~~l~~---------------~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a-~D~~~~~v~~~~~l~~---~~- 609 (774)
+.. .+.++.. .++++++|..-..|.++............. -..+...++++.+-.+ +.
T Consensus 144 ~~~--~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~ 221 (753)
T 3jro_A 144 HAI--GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221 (753)
T ss_dssp CSS--CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred CCC--ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCE
Confidence 111 2233333 267899999988888876665433322222 1234556777777655 44
Q ss_pred EEEEccCCcEEEEeeCCC
Q 004094 610 YLGAENNFNLFTVRKNSE 627 (774)
Q Consensus 610 ~l~~D~~gnl~~l~~~~~ 627 (774)
++.++.+|.+.++.....
T Consensus 222 l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 222 LASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp EEEEESSSCEEEEEESSS
T ss_pred EEEEecCCEEEEecCCCC
Confidence 567888999999998753
No 105
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=97.34 E-value=0.32 Score=54.43 Aligned_cols=323 Identities=11% Similarity=0.137 Sum_probs=173.0
Q ss_pred cCcEEEEecCCCceeeeEeCCCCCcEEEEEEC--CCEEEEEEcCCeEEEEEE--cCceEEEEEeccCCceeEEEEeCCCC
Q 004094 152 SGSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEI--GDGILTEVKHAQLEYEISCLDINPIG 227 (774)
Q Consensus 152 ~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~~~~~~~--~~~~l~~~~~~~l~~~is~l~~~~~~ 227 (774)
.+.|++++.++++.+..+.. |..+..++++ +..++++..++.+..+.+ ..++. +...+....+.++++++..
T Consensus 158 d~~V~v~D~~t~~~~~~i~~--g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~--~~~i~~g~~p~~va~sp~~ 233 (543)
T 1nir_A 158 AGQIALVDGDSKKIVKVIDT--GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK--VAEIKIGIEARSVESSKFK 233 (543)
T ss_dssp GTEEEEEETTTCCEEEEEEC--STTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE--EEEEECCSEEEEEEECCST
T ss_pred CCeEEEEECCCceEEEEEec--CcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcE--EEEEecCCCcceEEeCCCc
Confidence 35688888887777766653 3345555555 558888877788888887 33332 3334456678888886411
Q ss_pred CCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCC---c---c----CceeEEeeeecCeeEEEEEeCCCcEEEEEEe
Q 004094 228 ENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG---E---I----IPRSVLLCAFEGISYLLCALGDGHLLNFLLN 297 (774)
Q Consensus 228 ~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~---~---~----~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~ 297 (774)
. ....+++++.+.++++.+|+..+++++....... + . -+.++.+.. .+...++....+|.+..+...
T Consensus 234 ~--~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~-~~~~~~vs~~~~g~i~vvd~~ 310 (543)
T 1nir_A 234 G--YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH-EHPEFIVNVKETGKVLLVNYK 310 (543)
T ss_dssp T--CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEECT
T ss_pred C--CCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC-CCCEEEEEECCCCeEEEEEec
Confidence 0 0146788887659999999998888765433311 0 0 122333322 134445566778888887765
Q ss_pred cCCCccccceeeecCCCCeEEEEEEeCCcceEEEec--CCCeEEEec-CCcEE-Eeeeccc-CceeeecccCCCCCC-cE
Q 004094 298 MKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS--DRPTVIYSS-NKKLL-YSNVNLK-EVSHMCPFNSAAFPD-SL 371 (774)
Q Consensus 298 ~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~--~~p~~l~~~-~~~~~-~~~~~~~-~i~~~~~f~~~~~~~-~l 371 (774)
... .+. ......|..|..+. |. .+...+++++ +....++.. .+++. ..++... .......|. .|+ +-
T Consensus 311 ~~~-~l~-~~~i~~~~~~~~~~-~s-pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~---~p~~g~ 383 (543)
T 1nir_A 311 DID-NLT-VTSIGAAPFLHDGG-WD-SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFV---HPKYGP 383 (543)
T ss_dssp TSS-SCE-EEEEECCSSCCCEE-EC-TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEE---ETTTEE
T ss_pred CCC-cce-eEEeccCcCccCce-EC-CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccC---CCCCcc
Confidence 421 111 11233444443332 22 1334455554 223333322 34432 1222100 000011121 133 43
Q ss_pred EEEe----CCeEEEEEEcCCCC----e-EEEEEeCC-CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCce
Q 004094 372 AIAK----EGELTIGTIDDIQK----L-HIRSIPLG-EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFE 441 (774)
Q Consensus 372 ~~~~----~~~l~i~~l~~~~~----~-~~~~i~l~-~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~ 441 (774)
++++ ++.+.+..+++... | .+++++.. ..+..|.+||+++.+.+...-+ .+......|.++|..+.+
T Consensus 384 ~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~---~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 384 VWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN---PDARISQSVAVFDLKNLD 460 (543)
T ss_dssp EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTC---SSHHHHTCEEEEETTCTT
T ss_pred EEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCC---CCcccCceEEEEECCCCC
Confidence 4433 37888888876321 3 57888875 4568899999999877765211 111123479999998887
Q ss_pred EE-EEEEC-------CCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEE
Q 004094 442 FI-STYPL-------DTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQ 500 (774)
Q Consensus 442 ~i-~~~~~-------~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~ 500 (774)
.. ..+.. +....+. ...|..+++. ++++.-... ...|.|.+|+.+.++++
T Consensus 461 ~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~g~~-~~~s~~~~~-----~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 461 AKYQVLPIAEWADLGEGAKRVV---QPEYNKRGDE-VWFSVWNGK-----NDSSALVVVDDKTLKLK 518 (543)
T ss_dssp SCCEEECHHHHHCCCSSCCEEE---EEEECSSSSE-EEEEEECCT-----TSCCEEEEEETTTTEEE
T ss_pred CCeEEeechhhcccCCCCCceE---eccCCCCCCE-EEEEeecCC-----CCCCeEEEEECCCceEE
Confidence 65 33322 1233333 3457665554 333321111 13489999887665554
No 106
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=97.28 E-value=0.04 Score=58.28 Aligned_cols=199 Identities=16% Similarity=0.164 Sum_probs=118.3
Q ss_pred ccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCC
Q 004094 401 PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 480 (774)
Q Consensus 401 p~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~ 480 (774)
++-++|+|+.+.+++++... -..|++.|..+.+.+..++- ...+.++. |..+ ..+++.|+.
T Consensus 136 ~~~v~fSpDg~~la~as~~~--------d~~i~iwd~~~~~~~~~~~~--~~~V~~v~---fspd-g~~l~s~s~----- 196 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKV--------PAIMRIIDPSDLTEKFEIET--RGEVKDLH---FSTD-GKVVAYITG----- 196 (365)
T ss_dssp EEEEEECTTSSCEEEEESCS--------SCEEEEEETTTTEEEEEEEC--SSCCCEEE---ECTT-SSEEEEECS-----
T ss_pred EEEEEEcCCCCEEEEEECCC--------CCEEEEeECCCCcEEEEeCC--CCceEEEE---EccC-CceEEeccc-----
Confidence 56689999999988887542 24899999999988877653 33466654 5543 456776652
Q ss_pred CCCCcceEEEEEEEeCCeEE-EEEEEeecCceeEeccc-cCe-EEEEE-C--CEEEEEEeeecCCCchhhhhh---cccc
Q 004094 481 ENEPTKGRILVFIVEDGKLQ-LIAEKETKGAVYSLNAF-NGK-LLAAI-N--QKIQLYKWMLRDDGTRELQSE---CGHH 551 (774)
Q Consensus 481 e~~~~~Grl~v~~i~~~kl~-~~~~~~~~g~v~~i~~~-~~~-lv~~~-g--~~l~v~~~~~~~~~~~~l~~~---~~~~ 551 (774)
+.+.++....++.. ........+.|.+++-. ++. ++++. . ..+.++.|+... ........ ....
T Consensus 197 ------~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~ 269 (365)
T 4h5i_A 197 ------SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS-GNTSVLRSKQVTNRF 269 (365)
T ss_dssp ------SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET-TEEEEEEEEEEESSC
T ss_pred ------eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc-ceecceeeeeecCCC
Confidence 23455554443322 22222345677777654 444 44433 2 234555554321 11111111 1111
Q ss_pred cceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeE-EEEccCCcEEEEeeCCC
Q 004094 552 GHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIY-LGAENNFNLFTVRKNSE 627 (774)
Q Consensus 552 ~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~-l~~D~~gnl~~l~~~~~ 627 (774)
..+..+..+-.+++|++|..-.+|.+ |+.+..+....-..-+...|+++.|-.++.+ +.+-.|+.+.+++.++.
T Consensus 270 ~~V~~~~~Spdg~~lasgs~D~~V~i--wd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 270 KGITSMDVDMKGELAVLASNDNSIAL--VKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SCEEEEEECTTSCEEEEEETTSCEEE--EETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCeEeEEECCCCCceEEEcCCCEEEE--EECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 12233333446779999999889877 5666655443333456778999998766665 45678999999998654
No 107
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=97.25 E-value=0.072 Score=55.94 Aligned_cols=229 Identities=8% Similarity=0.000 Sum_probs=132.0
Q ss_pred CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeee
Q 004094 398 GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYV 477 (774)
Q Consensus 398 ~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~ 477 (774)
...++.++|+|+.+.+++++.+ .++++|..+.+.+....+.. +..+ .+........++|.
T Consensus 19 ~~~V~~v~fs~dg~~la~g~~~-----------~~~iw~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~--- 78 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLILSTLK-----------SFEIYNVHPVAHIMSQEMRH---LSKV---RMLHRTNYVAFVTG--- 78 (355)
T ss_dssp CCCCCEEEECTTSSEEEEECSS-----------EEEEEEETTEEEEEEEECSC---CCEE---EECTTSSEEEEECS---
T ss_pred CCceEEEEECCCCCEEEEEcCC-----------EEEEEecCCcceeeeeecCC---eEEE---EEcCCCCEEEEEEC---
Confidence 3567889999999877766422 46788877777665555542 2222 22222233334454
Q ss_pred CCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEECCEEEEEEeeecCCCchhhhhhcccccceEEE
Q 004094 478 LPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILAL 557 (774)
Q Consensus 478 ~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~ 557 (774)
..|.+.+|+...++.. ...++.++|.+++.-.+.++++.++++++|++.. +.+.+... .......
T Consensus 79 -------~d~~v~iWd~~~~~~~--~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~---~~~~~~~~---~~~~~~~ 143 (355)
T 3vu4_A 79 -------VKEVVHIWDDVKKQDV--SRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGN---PWKRITDD---IRFGGVC 143 (355)
T ss_dssp -------STTEEEEEETTTTEEE--EEEECSSCEEEEEECSSEEEEEETTEEEEEESST---TCCBSSCC---EEEEEEE
T ss_pred -------CccEEEEEECCCCcEE--EEEECCCceEEEEEcCCEEEEEEcCEEEEEECCC---CceeeEEe---ccCCceE
Confidence 1258999998766543 3445788999999778888899999999988642 11122111 1111222
Q ss_pred EEEEeCCEEEE--EeccccEEEEEEEccC------C-----e----EEEEeccCCcceeEEEEEeeCCe-EEEEccCCc-
Q 004094 558 YVQTRGDFIVV--GDLMKSISLLIYKHEE------G-----A----IEERARDYNANWMSAVEILDDDI-YLGAENNFN- 618 (774)
Q Consensus 558 ~l~~~~~~I~v--gD~~~Sv~~~~~~~~~------~-----~----l~~~a~D~~~~~v~~~~~l~~~~-~l~~D~~gn- 618 (774)
.+.. +++++ |+.-..|.++...... . . +..+ ..+...++++.|-.++. ++.+..+|.
T Consensus 144 ~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~--~~h~~~v~~~~~s~~g~~l~s~s~d~~~ 219 (355)
T 3vu4_A 144 EFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI--KAHTNPIKMVRLNRKSDMVATCSQDGTI 219 (355)
T ss_dssp EEET--TEEEEEESSCTTCEEEEECCC------------------CCEEE--CCCSSCEEEEEECTTSSEEEEEETTCSE
T ss_pred EEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE--EccCCceEEEEECCCCCEEEEEeCCCCE
Confidence 2322 66666 4666666665433211 0 0 1111 23445677777765554 556788998
Q ss_pred EEEEeeCCCCCCccccceeeeEEEEE---cCcccceEEeeeeeecCCCCCCCCccEEEEEccccceEEEEe
Q 004094 619 LFTVRKNSEGATDEERGRLEVVGEYH---LGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIAS 686 (774)
Q Consensus 619 l~~l~~~~~~~~~~~~~~L~~~~~f~---lg~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gsi~~i~~ 686 (774)
+.++..... .. ...+. ....|+++.. . .....++.++.+|.|...-.
T Consensus 220 v~iwd~~~~-------~~---~~~~~~g~h~~~v~~~~~---s--------~~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 220 IRVFKTEDG-------VL---VREFRRGLDRADVVDMKW---S--------TDGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp EEEEETTTC-------CE---EEEEECTTCCSCEEEEEE---C--------TTSCEEEEEETTCEEEEEES
T ss_pred EEEEECCCC-------cE---EEEEEcCCCCCcEEEEEE---C--------CCCCEEEEEECCCEEEEEEc
Confidence 998887531 12 23333 3345555432 1 13457788888999886643
No 108
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=97.25 E-value=0.0047 Score=65.43 Aligned_cols=231 Identities=10% Similarity=-0.010 Sum_probs=110.6
Q ss_pred CceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCC-ccCceeEEeeeecCeeEEEEEeCCCcEEE
Q 004094 215 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLLN 293 (774)
Q Consensus 215 ~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~ 293 (774)
...|+|+++.+ ...+++.|.. ++.|.||++.+........+.. .....++.+.+ +..+|+.|..||.+..
T Consensus 11 ~~~v~~~~~s~------~g~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 11 PKPSYEHAFNS------QRTEFVTTTA-TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP--KSNRIVTCSQDRNAYV 81 (377)
T ss_dssp SSCCSCCEECS------SSSEEECCCS-SSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT--TTCCEEEEETTSSEEE
T ss_pred CCcEEEEEECC------CCCEEEEecC-CCEEEEEEccCCceEEEEEEecCCceEEEEEEeC--CCCEEEEEeCCCeEEE
Confidence 45788999875 2567777777 9999999987652111112221 11223333332 3467899999999999
Q ss_pred EEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEec-CCCeEEEecC-Cc----EEEeee-cccCceeeecccCCC
Q 004094 294 FLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYSSN-KK----LLYSNV-NLKEVSHMCPFNSAA 366 (774)
Q Consensus 294 y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~l~~~~-~~----~~~~~~-~~~~i~~~~~f~~~~ 366 (774)
|.+.... .+.......-...++.-..+.. +...++..+ +....++..+ ++ .....- ....+.+++ |+.
T Consensus 82 wd~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~-~~~-- 156 (377)
T 3dwl_C 82 YEKRPDG-TWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD-WHP-- 156 (377)
T ss_dssp C-------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEE-ECT--
T ss_pred EEcCCCC-ceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEE-EcC--
Confidence 9887532 0111111111223333222221 222333333 3333333222 11 111111 122343333 321
Q ss_pred CCCcEEEE-eCCeEEEEEEcCCC----------------CeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceee
Q 004094 367 FPDSLAIA-KEGELTIGTIDDIQ----------------KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEM 429 (774)
Q Consensus 367 ~~~~l~~~-~~~~l~i~~l~~~~----------------~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~ 429 (774)
..+.++.. .++.+++..+.... .-..+.+.-...+..++++|+.+.++.++.+.
T Consensus 157 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--------- 227 (377)
T 3dwl_C 157 NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDS--------- 227 (377)
T ss_dssp TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTT---------
T ss_pred CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCC---------
Confidence 11234443 36789999985321 11222223345578899999988777766442
Q ss_pred eEEEEEECCCceE----EEEEECCCCceEEEEEEEEEcCCCceEEEEEe
Q 004094 430 HFVRLLDDQTFEF----ISTYPLDTFEYGCSILSCSFSDDSNVYYCVGT 474 (774)
Q Consensus 430 ~~l~l~d~~~~~~----i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT 474 (774)
.|+++|..+.+. +..+.. ....+.++. +..+ ..+++.|.
T Consensus 228 -~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~---~s~~-~~~l~~~~ 270 (377)
T 3dwl_C 228 -SVTIAYPSAPEQPPRALITVKL-SQLPLRSLL---WANE-SAIVAAGY 270 (377)
T ss_dssp -EEC-CEECSTTSCEEECCCEEC-SSSCEEEEE---EEET-TEEEEEES
T ss_pred -cEEEEECCCCCCcceeeEeecC-CCCceEEEE---EcCC-CCEEEEEc
Confidence 688888766554 333332 223355554 3222 45666664
No 109
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=97.23 E-value=0.25 Score=50.82 Aligned_cols=275 Identities=11% Similarity=0.096 Sum_probs=145.7
Q ss_pred CcEEEEEECC---CEEEEEEcCCeEEEEEEcC--ceE-EEEEe-ccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEE
Q 004094 175 YSVNVATANA---SQVLLATGGGHLVYLEIGD--GIL-TEVKH-AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVR 247 (774)
Q Consensus 175 ~~I~~a~~~~---~~lvv~~~~~~~~~~~~~~--~~l-~~~~~-~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~ 247 (774)
..|.+.+..+ ..++-+..++.+..+.+.. .+. ..+.. ......|.++++.+ ...+++.|.+ |+.|+
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~------dg~~l~s~s~-D~~v~ 90 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA------DGAYALSASW-DKTLR 90 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT------TSSEEEEEET-TSEEE
T ss_pred ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECC------CCCEEEEEeC-CCEEE
Confidence 3576666542 4566566677887777643 111 11211 23467889999865 2567888888 99999
Q ss_pred EEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCC-CCeEEEEEEeC--
Q 004094 248 IFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGT-QPITLRTFSSK-- 324 (774)
Q Consensus 248 i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~-~pv~l~~~~~~-- 324 (774)
+|++.+.+.+....- ......++.+. .+..+|+.|..||.+..|.+.. ..+ ....|. .++.-..+...
T Consensus 91 ~wd~~~~~~~~~~~~-h~~~v~~~~~~--~~~~~l~s~s~D~~i~vwd~~~--~~~----~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 91 LWDVATGETYQRFVG-HKSDVMSVDID--KKASMIISGSRDKTIKVWTIKG--QCL----ATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp EEETTTTEEEEEEEC-CSSCEEEEEEC--TTSCEEEEEETTSCEEEEETTS--CEE----EEECCCSSCEEEEEECCC--
T ss_pred EEECCCCCeeEEEcc-CCCcEEEEEEc--CCCCEEEEEeCCCeEEEEECCC--CeE----EEEeccCCcEEEEEEccCCC
Confidence 999987665432111 01122344333 2456789999999999997642 111 111121 22221111100
Q ss_pred ---CcceEEEecCCC-eEEEecC-CcEEEe-eecccCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCCCCeEEEEEeC
Q 004094 325 ---NTTHVFAASDRP-TVIYSSN-KKLLYS-NVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPL 397 (774)
Q Consensus 325 ---~~~~v~~~~~~p-~~l~~~~-~~~~~~-~~~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l 397 (774)
+...++..+..- ..++.-+ .+.... .-....+.+++ |+. ....++... ++.+++..+.... ..+.+..
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~-~sp--~g~~l~s~~~dg~i~iwd~~~~~--~~~~~~~ 236 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASP--DGTLIASAGKDGEIMLWNLAAKK--AMYTLSA 236 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEE-ECT--TSSEEEEEETTCEEEEEETTTTE--EEEEEEC
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEE-EcC--CCCEEEEEeCCCeEEEEECCCCc--EEEEecC
Confidence 111233333333 3333322 222111 11113344433 221 112233333 6789998877543 4556666
Q ss_pred CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC-------CCceEEEEEEEEEcCCCceEE
Q 004094 398 GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD-------TFEYGCSILSCSFSDDSNVYY 470 (774)
Q Consensus 398 ~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~-------~~E~~~si~~~~~~~~~~~~i 470 (774)
...+..++++|+...++.++.. .+++++..+...+..+.-. ....+.++ .+.. ..++|
T Consensus 237 ~~~v~~~~~sp~~~~la~~~~~-----------~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~sp-dg~~l 301 (319)
T 3frx_A 237 QDEVFSLAFSPNRYWLAAATAT-----------GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL---AWSA-DGQTL 301 (319)
T ss_dssp CSCEEEEEECSSSSEEEEEETT-----------EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEE---EECT-TSSEE
T ss_pred CCcEEEEEEcCCCCEEEEEcCC-----------CcEEEEeCcCeeeeccCccccccccCcCcceeEE---EECC-CCCEE
Confidence 6778899999998777665532 4777777665555544221 12234443 3443 34677
Q ss_pred EEEeeeeCCCCCCCcceEEEEEEEe
Q 004094 471 CVGTAYVLPEENEPTKGRILVFIVE 495 (774)
Q Consensus 471 ~VGT~~~~~~e~~~~~Grl~v~~i~ 495 (774)
+.|. ..|.|.+|++.
T Consensus 302 ~sg~----------~Dg~i~vWd~~ 316 (319)
T 3frx_A 302 FAGY----------TDNVIRVWQVM 316 (319)
T ss_dssp EEEE----------TTSCEEEEEEE
T ss_pred EEee----------cCceEEEEEEe
Confidence 7776 23789999875
No 110
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=97.21 E-value=0.23 Score=50.33 Aligned_cols=267 Identities=11% Similarity=0.050 Sum_probs=140.7
Q ss_pred CEEEEEEcCCeEEEEEEcCceEEEE-EeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCC
Q 004094 185 SQVLLATGGGHLVYLEIGDGILTEV-KHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLG 263 (774)
Q Consensus 185 ~~lvv~~~~~~~~~~~~~~~~l~~~-~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~ 263 (774)
+.|.++. ++.+..+.+..++..+. .-......|+|+++.+ ..++++.|.. |+.+.+|++.+.+.+....-.
T Consensus 37 ~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~------~~~~l~sgs~-Dg~v~iw~~~~~~~~~~~~~h 108 (318)
T 4ggc_A 37 NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK------EGNYLAVGTS-SAEVQLWDVQQQKRLRNMTSH 108 (318)
T ss_dssp SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT------TSSEEEEEET-TSEEEEEETTTTEEEEEEECC
T ss_pred CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC------CCCEEEEEEC-CCcEEEeecCCceeEEEecCc
Confidence 3445554 56676667666655443 2234456799999965 2578888888 999999999887765432211
Q ss_pred CccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEec-CCCeEEEec
Q 004094 264 GEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYSS 342 (774)
Q Consensus 264 ~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~l~~~ 342 (774)
......+. .. ...|..|..+|.+..+....... ......-...++....+.. ....++..+ +....++..
T Consensus 109 ---~~~~~~~~-~~-~~~l~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 109 ---SARVGSLS-WN-SYILSSGSRSGHIHHHDVRVAEH---HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp ---SSCEEEEE-EE-TTEEEEEETTSEEEEEETTSSSC---EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEES
T ss_pred ---cceEEEee-cC-CCEEEEEecCCceEeeecCCCce---eEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEEC
Confidence 11111111 11 34678899999887765432211 1111111122233222221 222333333 333333322
Q ss_pred C-Cc-----EEEeeecccCceeeecccCCCCCCcEEEEe---CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEE
Q 004094 343 N-KK-----LLYSNVNLKEVSHMCPFNSAAFPDSLAIAK---EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTF 413 (774)
Q Consensus 343 ~-~~-----~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~---~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~ 413 (774)
. ++ ..........+.+++... ..++.+..++ .+.+++...... ...........+..+.+++..+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~i~lwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~~ 255 (318)
T 4ggc_A 180 APGEGGWVPLQTFTQHQGAVKAVAWCP--WQSNVLATGGGTSDRHIRIWNVCSG--ACLSAVDAHSQVCSILWSPHYKEL 255 (318)
T ss_dssp SCBTTBSCCSEEECCCCSCEEEEEECT--TSTTEEEEEECTTTCEEEEEETTTC--CEEEEEECSSCEEEEEEETTTTEE
T ss_pred CCCcccccceeeecccCCceEEEEecC--CCCcEEEEEecCCCCEEEEEecccc--cccccccceeeeeeeeecccccce
Confidence 1 11 111111112333332211 1122333443 345666655443 234444555667788899998888
Q ss_pred EEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEE
Q 004094 414 AICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFI 493 (774)
Q Consensus 414 ~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~ 493 (774)
++++... ...|++.|..+++.+.+++- ....|++++ +..+ .++|+.|. .-|.|.+|+
T Consensus 256 ~~~sg~~--------d~~i~iwd~~~~~~~~~l~g-H~~~V~~l~---~spd-g~~l~S~s----------~D~~v~iWd 312 (318)
T 4ggc_A 256 ISGHGFA--------QNQLVIWKYPTMAKVAELKG-HTSRVLSLT---MSPD-GATVASAA----------ADETLRLWR 312 (318)
T ss_dssp EEEECTT--------TCCEEEEETTTCCEEEEECC-CSSCEEEEE---ECTT-SSCEEEEE----------TTTEEEEEC
T ss_pred EEEEEcC--------CCEEEEEECCCCcEEEEEcC-CCCCEEEEE---EcCC-CCEEEEEe----------cCCeEEEEE
Confidence 8776432 24699999999988876653 234566654 4433 45666554 237898987
Q ss_pred Ee
Q 004094 494 VE 495 (774)
Q Consensus 494 i~ 495 (774)
+.
T Consensus 313 ~~ 314 (318)
T 4ggc_A 313 CF 314 (318)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 111
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=97.16 E-value=0.28 Score=50.27 Aligned_cols=266 Identities=14% Similarity=0.133 Sum_probs=144.9
Q ss_pred cceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEe-CCCcEEEEEEecCCCccccceeeec
Q 004094 233 SQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCAL-GDGHLLNFLLNMKTGELTDRKKVSL 311 (774)
Q Consensus 233 ~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl-~~G~l~~y~~~~~~~~l~~~~~~~l 311 (774)
...+++....++.|.+|++.+.+.+.....+. ..| .+++.+ +..+|++.. .++.+..|... ++.+. .+....
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~-~~~~s~--dg~~l~~~~~~~~~i~~~d~~--~~~~~-~~~~~~ 81 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGY-DFV-DTAITS--DCSNVVVTSDFCQTLVQIETQ--LEPPK-VVAIQE 81 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCC-CEE-EEEECS--SSCEEEEEESTTCEEEEEECS--SSSCE-EEEEEE
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccC-Ccc-eEEEcC--CCCEEEEEeCCCCeEEEEECC--CCcee-EEeccc
Confidence 45666666668999999998777655434432 234 554443 234555544 47877766544 34431 233445
Q ss_pred CCCCeE-EEEEEeCCcceEEEecCC----CeEEEecC-CcE-EEeeecccCceeeecccCCCCCCcEEEEe--CCe-EEE
Q 004094 312 GTQPIT-LRTFSSKNTTHVFAASDR----PTVIYSSN-KKL-LYSNVNLKEVSHMCPFNSAAFPDSLAIAK--EGE-LTI 381 (774)
Q Consensus 312 G~~pv~-l~~~~~~~~~~v~~~~~~----p~~l~~~~-~~~-~~~~~~~~~i~~~~~f~~~~~~~~l~~~~--~~~-l~i 381 (774)
+..|.. +. +. .+...+++.... ...++..+ ++. ...+.. ....++ .|+. ..+.++.+. ++. +.+
T Consensus 82 ~~~~~~~~~-~s-~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~-~~sp--dg~~l~~~~~~~~~~i~~ 155 (331)
T 3u4y_A 82 GQSSMADVD-IT-PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGI-AISP--NGNGLILIDRSSANTVRR 155 (331)
T ss_dssp CSSCCCCEE-EC-TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEE-EECT--TSSCEEEEEETTTTEEEE
T ss_pred CCCCccceE-EC-CCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccce-EECC--CCCEEEEEecCCCceEEE
Confidence 666655 43 22 233455544333 22333322 332 222221 112221 2221 112344443 366 898
Q ss_pred EEEcCCCCe---EEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceE---EEEEECCCCceEE
Q 004094 382 GTIDDIQKL---HIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEF---ISTYPLDTFEYGC 455 (774)
Q Consensus 382 ~~l~~~~~~---~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~---i~~~~~~~~E~~~ 455 (774)
..++....+ ..+.++.+..|+.++++|+.+.+++++... ..+.++|..+++. +..+.. +..+.
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~---------~~v~v~d~~~~~~~~~~~~~~~--~~~~~ 224 (331)
T 3u4y_A 156 FKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG---------NSIGILETQNPENITLLNAVGT--NNLPG 224 (331)
T ss_dssp EEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTT---------TEEEEEECSSTTSCEEEEEEEC--SSCCC
T ss_pred EEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCC---------CeEEEEECCCCcccceeeeccC--CCCCc
Confidence 888864432 245567788899999999998766665432 3799999987776 555543 34444
Q ss_pred EEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeec-----Ccee-----EeccccCeEEEEE
Q 004094 456 SILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETK-----GAVY-----SLNAFNGKLLAAI 525 (774)
Q Consensus 456 si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~-----g~v~-----~i~~~~~~lv~~~ 525 (774)
++. +..++ ++++++.. ..+.|++|+...++++.+...... .++. ++.+-+.+|+++.
T Consensus 225 ~~~---~spdg-~~l~v~~~---------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 291 (331)
T 3u4y_A 225 TIV---VSRDG-STVYVLTE---------STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISA 291 (331)
T ss_dssp CEE---ECTTS-SEEEEECS---------SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEE
T ss_pred eEE---ECCCC-CEEEEEEc---------CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEec
Confidence 433 44443 44554432 346799998887887666544322 2222 3333344566655
Q ss_pred C--CEEEEEEee
Q 004094 526 N--QKIQLYKWM 535 (774)
Q Consensus 526 g--~~l~v~~~~ 535 (774)
+ +.|.+|++.
T Consensus 292 ~~~~~v~v~d~~ 303 (331)
T 3u4y_A 292 NISRELKVFTIS 303 (331)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCcEEEEEec
Confidence 3 578888753
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=97.06 E-value=0.28 Score=51.39 Aligned_cols=149 Identities=11% Similarity=-0.035 Sum_probs=90.9
Q ss_pred eeeeecCCCeEEEEecCcEEEEecCCC-ceeeeEeCCCCCcEEEEEECCCEEEEE--EcCCeEEEEEEcCce-E------
Q 004094 137 LFCHDAIYNQLVQVTSGSVRLVSSTSR-ELRNEWKSPPGYSVNVATANASQVLLA--TGGGHLVYLEIGDGI-L------ 206 (774)
Q Consensus 137 l~~~~~~~~~~vQVT~~~i~l~~~~~~-~~~~~~~~~~~~~I~~a~~~~~~lvv~--~~~~~~~~~~~~~~~-l------ 206 (774)
+.+-.+..+.++=+..+.|++++.... +.+..+.. ....++.....++++ ..++.+..+.+..++ .
T Consensus 103 v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~ 178 (355)
T 3vu4_A 103 VKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR----FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQG 178 (355)
T ss_dssp EEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE----EEEEEEEETTEEEEEESSCTTCEEEEECCC----------
T ss_pred eEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc----CCceEEEEccEEEEeCCCcCcEEEEEECCCCCcccccccc
Confidence 344344445556677888999987764 44444432 222333444666665 345777777775432 0
Q ss_pred ------EE-E-EeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCE-EEEEECCCCCeeEEecCC-CccCceeEEeeee
Q 004094 207 ------TE-V-KHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDIS-VRIFSLPDLNLITKEHLG-GEIIPRSVLLCAF 276 (774)
Q Consensus 207 ------~~-~-~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~-i~i~~l~~~~~~~~~~l~-~~~~p~si~~~~~ 276 (774)
.+ + .-......|+|+++++ ...+++.|.. |++ ++||++.+.+.+...... ......++.+.+
T Consensus 179 ~~~~~~~p~~~~~~~h~~~v~~~~~s~------~g~~l~s~s~-d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~- 250 (355)
T 3vu4_A 179 VQQKAILGKGVLIKAHTNPIKMVRLNR------KSDMVATCSQ-DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST- 250 (355)
T ss_dssp --------CCEEECCCSSCEEEEEECT------TSSEEEEEET-TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECT-
T ss_pred ccccccCcccEEEEccCCceEEEEECC------CCCEEEEEeC-CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECC-
Confidence 01 1 1123567899999975 2567888877 998 999999887776543311 112334444432
Q ss_pred cCeeEEEEEeCCCcEEEEEEec
Q 004094 277 EGISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 277 ~~~~~L~vgl~~G~l~~y~~~~ 298 (774)
+..+|+.|..||.+..|++..
T Consensus 251 -~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 251 -DGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp -TSCEEEEEETTCEEEEEESSC
T ss_pred -CCCEEEEEECCCEEEEEEccC
Confidence 456899999999999998764
No 113
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.04 E-value=0.058 Score=57.63 Aligned_cols=200 Identities=10% Similarity=0.040 Sum_probs=114.0
Q ss_pred CcccEEEEecCC-CEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEE-CCCCceEEEEEEEEEcCCCceEEEEEeee
Q 004094 399 EHPRRICHQEQS-RTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP-LDTFEYGCSILSCSFSDDSNVYYCVGTAY 476 (774)
Q Consensus 399 ~tp~~i~y~~~~-~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~-~~~~E~~~si~~~~~~~~~~~~i~VGT~~ 476 (774)
..+..++++|.. +.++.++.+ ..|++.|..+.+.+..+. -.....+.++. +.. ...++++|+
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~---~~~-~~~~l~~~~-- 195 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGCD----------NVILVWDVGTGAAVLTLGPDVHPDTIYSVD---WSR-DGALICTSC-- 195 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEETT----------SCEEEEETTTTEEEEEECTTTCCSCEEEEE---ECT-TSSCEEEEE--
T ss_pred CeEEEEEECcCCCCEEEEEcCC----------CEEEEEECCCCCccEEEecCCCCCceEEEE---ECC-CCCEEEEEe--
Confidence 457788999987 455555533 369999998888877764 23445566654 333 345677666
Q ss_pred eCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCc-eeEeccc-cCeEEEEE-----CCEEEEEEeeecCCCchhhhhh-c
Q 004094 477 VLPEENEPTKGRILVFIVEDGKLQLIAEKETKGA-VYSLNAF-NGKLLAAI-----NQKIQLYKWMLRDDGTRELQSE-C 548 (774)
Q Consensus 477 ~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~-v~~i~~~-~~~lv~~~-----g~~l~v~~~~~~~~~~~~l~~~-~ 548 (774)
..|.|++|++..++..........++ +.+++-. ++.++++. ...|++|+... +...+... .
T Consensus 196 --------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~---~~~~~~~~~~ 264 (402)
T 2aq5_A 196 --------RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH---LEEPLSLQEL 264 (402)
T ss_dssp --------TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTB---CSSCSEEEEC
T ss_pred --------cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcc---ccCCceEEec
Confidence 24899999988766544332334444 6666644 45555443 46788877531 11111111 0
Q ss_pred ccccceEEEEEEEeCCEEEE-EeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccCCcEEEEeeCC
Q 004094 549 GHHGHILALYVQTRGDFIVV-GDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNS 626 (774)
Q Consensus 549 ~~~~~~~~~~l~~~~~~I~v-gD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~ 626 (774)
.....+..+.....++++++ |..-..|.++.+......+..+..-.....+.++.+..++.++++ .++.+.+++...
T Consensus 265 ~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~~ 342 (402)
T 2aq5_A 265 DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN-KCEIARFYKLHE 342 (402)
T ss_dssp CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG-GTEEEEEEEEET
T ss_pred cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee-cceeEEEEEcCC
Confidence 11122233334445677764 555667877666543332444443334456667777766665554 345677777653
No 114
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=97.03 E-value=0.71 Score=53.19 Aligned_cols=234 Identities=11% Similarity=0.052 Sum_probs=119.5
Q ss_pred CcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECC
Q 004094 175 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 252 (774)
Q Consensus 175 ~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~ 252 (774)
..|.+.+.+ +..++.+..++.+..+.+..++.... -......|.|+++.+. ...++.|.. |++|++|++.
T Consensus 431 ~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~-~~~h~~~v~~~~~s~~------~~~l~s~s~-D~~i~iwd~~ 502 (694)
T 3dm0_A 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRR-FVGHTKDVLSVAFSLD------NRQIVSASR-DRTIKLWNTL 502 (694)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-EECCSSCEEEEEECTT------SSCEEEEET-TSCEEEECTT
T ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeE-EeCCCCCEEEEEEeCC------CCEEEEEeC-CCEEEEEECC
Confidence 357776655 44666666678888888766543322 1245678999999652 456777777 9999999975
Q ss_pred CCCeeEEec-CCC-ccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEE
Q 004094 253 DLNLITKEH-LGG-EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVF 330 (774)
Q Consensus 253 ~~~~~~~~~-l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~ 330 (774)
......... ... .....++.+..-+....|+.|..||.+..|.+.. +.+. +...-...++.-..+.. +...+.
T Consensus 503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~--~~~~--~~~~~h~~~v~~v~~sp-dg~~l~ 577 (694)
T 3dm0_A 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN--CKLR--STLAGHTGYVSTVAVSP-DGSLCA 577 (694)
T ss_dssp SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT--CCEE--EEECCCSSCEEEEEECT-TSSEEE
T ss_pred CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC--CcEE--EEEcCCCCCEEEEEEeC-CCCEEE
Confidence 422211111 110 0112233333222245788999999999987653 2211 11111123333223321 222333
Q ss_pred Eec-CCCeEEEecC-CcEEEeeecc-cCceeeecccCCCCCCcEEEEeCCeEEEEEEcCCCCeEEEEEeCC---------
Q 004094 331 AAS-DRPTVIYSSN-KKLLYSNVNL-KEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLG--------- 398 (774)
Q Consensus 331 ~~~-~~p~~l~~~~-~~~~~~~~~~-~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~--------- 398 (774)
..| +....++... ++.. ..+.. ..+.+ ..|+.. ...++...++.+++..+..... ++.+...
T Consensus 578 sg~~Dg~i~iwd~~~~~~~-~~~~~~~~v~~-~~~sp~--~~~l~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~ 651 (694)
T 3dm0_A 578 SGGKDGVVLLWDLAEGKKL-YSLEANSVIHA-LCFSPN--RYWLCAATEHGIKIWDLESKSI--VEDLKVDLKAEAEKAD 651 (694)
T ss_dssp EEETTSBCEEEETTTTEEE-ECCBCSSCEEE-EEECSS--SSEEEEEETTEEEEEETTTTEE--EEEECCCCC-------
T ss_pred EEeCCCeEEEEECCCCceE-EEecCCCcEEE-EEEcCC--CcEEEEEcCCCEEEEECCCCCC--hhhhcccccccccccc
Confidence 333 3344444333 3322 22222 22322 223321 1234445678888888765432 1222110
Q ss_pred -----------CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEEC
Q 004094 399 -----------EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDD 437 (774)
Q Consensus 399 -----------~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~ 437 (774)
.....+.++|+.+.++.++.+ +.|++.|.
T Consensus 652 ~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D----------g~i~iW~i 691 (694)
T 3dm0_A 652 NSGPAATKRKVIYCTSLNWSADGSTLFSGYTD----------GVIRVWGI 691 (694)
T ss_dssp ---------CCCCEEEEEECTTSSEEEEEETT----------SEEEEEEC
T ss_pred ccccccCCceeEEeeeEEEcCCCCEEEEEcCC----------CeEEEEec
Confidence 013567888888877766644 26777664
No 115
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.39 Score=49.57 Aligned_cols=220 Identities=11% Similarity=0.101 Sum_probs=122.8
Q ss_pred CCeEEEEEEcCCCCeEEEEEeC---CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCC-------ceEEEE
Q 004094 376 EGELTIGTIDDIQKLHIRSIPL---GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQT-------FEFIST 445 (774)
Q Consensus 376 ~~~l~i~~l~~~~~~~~~~i~l---~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~-------~~~i~~ 445 (774)
++.+++..+.....-..+.+.. ...++.++++|+.+.++.++.+. .+++.|... ++.+..
T Consensus 33 D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~----------~v~iw~~~~~~~~~~~~~~~~~ 102 (330)
T 2hes_X 33 DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS----------TVSIWAKEESADRTFEMDLLAI 102 (330)
T ss_dssp SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS----------CEEEEEC-------CCCEEEEE
T ss_pred CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC----------cEEEEEcccCcCccccceeEEE
Confidence 5678887776532222333322 24577899999988777776543 688887632 233332
Q ss_pred EECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeC--CeEEEEEE-EeecCceeEeccc-cCeE
Q 004094 446 YPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVED--GKLQLIAE-KETKGAVYSLNAF-NGKL 521 (774)
Q Consensus 446 ~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~--~kl~~~~~-~~~~g~v~~i~~~-~~~l 521 (774)
+.- ....+.++. +.. ...+|+.|. ..|.+.+|++.. ...+.+.. ..+.++|++++-- ++.+
T Consensus 103 ~~~-h~~~V~~v~---~sp-~g~~las~s----------~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 167 (330)
T 2hes_X 103 IEG-HENEVKGVA---WSN-DGYYLATCS----------RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL 167 (330)
T ss_dssp EC-----CEEEEE---ECT-TSCEEEEEE----------TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSE
T ss_pred EcC-CCCcEEEEE---ECC-CCCEEEEEe----------CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCE
Confidence 221 123344443 443 345777765 237899999852 22333332 2457889988754 3444
Q ss_pred EEEE--CCEEEEEEeeecCCCchhhhh-hcccccceEEEEEEEe----CCEEEEEeccccEEEEEEEccC--C----eEE
Q 004094 522 LAAI--NQKIQLYKWMLRDDGTRELQS-ECGHHGHILALYVQTR----GDFIVVGDLMKSISLLIYKHEE--G----AIE 588 (774)
Q Consensus 522 v~~~--g~~l~v~~~~~~~~~~~~l~~-~~~~~~~~~~~~l~~~----~~~I~vgD~~~Sv~~~~~~~~~--~----~l~ 588 (774)
+++. .++|++|+... +..+... ...+... +.++... +.+++.|..-..|.++.+.... . ...
T Consensus 168 l~s~s~D~~i~iW~~~~---~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 242 (330)
T 2hes_X 168 LASSSYDDTVRIWKDYD---DDWECVAVLNGHEGT--VWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE 242 (330)
T ss_dssp EEEEETTSCEEEEEEET---TEEEEEEEECCCSSC--EEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred EEEEcCCCeEEEEECCC---CCeeEEEEccCCCCc--EEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence 4433 46889987531 1111111 1112222 3334433 3478888888888887665421 1 111
Q ss_pred EEeccCCcceeEEEEEeeCCeEEEEccCCcEEEEeeC
Q 004094 589 ERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKN 625 (774)
Q Consensus 589 ~~a~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~ 625 (774)
..-...+...+.++.+-.++.++.+..+|.+.+++..
T Consensus 243 ~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 243 AILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEV 279 (330)
T ss_dssp EECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEE
T ss_pred eecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcC
Confidence 1112335667888887765667778889999999874
No 116
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=97.03 E-value=0.28 Score=49.26 Aligned_cols=199 Identities=13% Similarity=0.189 Sum_probs=106.7
Q ss_pred cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCC
Q 004094 400 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 479 (774)
Q Consensus 400 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~ 479 (774)
.|..+++.+..+.+.|+.... ...|..+|+ +.+.+..+.......+.++. +..++ . +.|+..
T Consensus 78 ~p~~i~~~~~~g~l~v~~~~~--------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~---~~~~g-~-l~v~~~---- 139 (286)
T 1q7f_A 78 YPNRVAVVRNSGDIIVTERSP--------THQIQIYNQ-YGQFVRKFGATILQHPRGVT---VDNKG-R-IIVVEC---- 139 (286)
T ss_dssp SEEEEEEETTTTEEEEEECGG--------GCEEEEECT-TSCEEEEECTTTCSCEEEEE---ECTTS-C-EEEEET----
T ss_pred CceEEEEEcCCCeEEEEcCCC--------CCEEEEECC-CCcEEEEecCccCCCceEEE---EeCCC-C-EEEEEC----
Confidence 577888854444455554210 236888885 55666666554445566554 34333 3 334331
Q ss_pred CCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEEEE--CCEEEEEEeeecCCCchhhhhhccccc-ceE
Q 004094 480 EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQLYKWMLRDDGTRELQSECGHHG-HIL 555 (774)
Q Consensus 480 ~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~~--g~~l~v~~~~~~~~~~~~l~~~~~~~~-~~~ 555 (774)
..++|++|+.....+...........+.+|+.- +|.|+++. ++.|++|+.+ +. .+..... .. ...
T Consensus 140 -----~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~----g~-~~~~~~~-~g~~~~ 208 (286)
T 1q7f_A 140 -----KVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE----GQ-YLRQIGG-EGITNY 208 (286)
T ss_dssp -----TTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT----CC-EEEEESC-TTTSCS
T ss_pred -----CCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC----CC-EEEEEcc-CCccCC
Confidence 236888887433233322211112346677654 57777775 5688887632 21 1111111 11 123
Q ss_pred EEEEEEe-CCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccCCcEEEEeeCCC
Q 004094 556 ALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSE 627 (774)
Q Consensus 556 ~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~~ 627 (774)
+..+... ++.++++|....-.+..|+.+...+..+........+.++.+-.++.++++|.++.+.++++...
T Consensus 209 p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 209 PIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred CcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEcccc
Confidence 4445543 33688888765312345677666565555433333344555544567777788888999988654
No 117
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.01 E-value=0.41 Score=49.38 Aligned_cols=227 Identities=10% Similarity=0.091 Sum_probs=117.8
Q ss_pred CceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCcc--------CceeEEeeeecCeeEEEEEe
Q 004094 215 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEI--------IPRSVLLCAFEGISYLLCAL 286 (774)
Q Consensus 215 ~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~--------~p~si~~~~~~~~~~L~vgl 286 (774)
...+.++++.+ ....++++...++.+.+|++.+.+.+......... .|+.+.+.+ +..+|+++.
T Consensus 88 ~~~~~~~~~s~------dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~ 159 (353)
T 3vgz_A 88 DLKPFGATINN------TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISG 159 (353)
T ss_dssp SSCCCSEEEET------TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEE
T ss_pred CCCcceEEECC------CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEe
Confidence 44466667754 24567777777899999999887776554443211 256665543 234566655
Q ss_pred --CCCcEEEEEEecCCCccccceeee-cCCCCeEEEEEEeCCcceEEEecCCCeE-EEec-CCcE-EEeeeccc-Cceee
Q 004094 287 --GDGHLLNFLLNMKTGELTDRKKVS-LGTQPITLRTFSSKNTTHVFAASDRPTV-IYSS-NKKL-LYSNVNLK-EVSHM 359 (774)
Q Consensus 287 --~~G~l~~y~~~~~~~~l~~~~~~~-lG~~pv~l~~~~~~~~~~v~~~~~~p~~-l~~~-~~~~-~~~~~~~~-~i~~~ 359 (774)
.+|.+..|.. .++... +... .|..|..+. +. .+...+++.+....+ ++.. .++. ...+.... +-...
T Consensus 160 ~~~~~~i~~~d~--~~~~~~--~~~~~~~~~~~~~~-~s-~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 3vgz_A 160 IGKESVIWVVDG--GNIKLK--TAIQNTGKMSTGLA-LD-SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFF 233 (353)
T ss_dssp ESSSCEEEEEET--TTTEEE--EEECCCCTTCCCCE-EE-TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred cCCCceEEEEcC--CCCceE--EEecCCCCccceEE-EC-CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence 3677776653 333321 2222 343343222 22 133456655543333 3322 2332 11222110 00000
Q ss_pred --ecccCCCCCCcEEEEe--CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEE
Q 004094 360 --CPFNSAAFPDSLAIAK--EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLL 435 (774)
Q Consensus 360 --~~f~~~~~~~~l~~~~--~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~ 435 (774)
..|+. ..+.+++.. ++.+.+..+.+ .-..+.++++. |..++++++.+.+.+..... ..|.++
T Consensus 234 ~~~~~s~--dg~~l~~~~~~~~~v~~~d~~~--~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~---------~~v~~~ 299 (353)
T 3vgz_A 234 INISLDT--ARQRAFITDSKAAEVLVVDTRN--GNILAKVAAPE-SLAVLFNPARNEAYVTHRQA---------GKVSVI 299 (353)
T ss_dssp EEEEEET--TTTEEEEEESSSSEEEEEETTT--CCEEEEEECSS-CCCEEEETTTTEEEEEETTT---------TEEEEE
T ss_pred ceEEECC--CCCEEEEEeCCCCEEEEEECCC--CcEEEEEEcCC-CceEEECCCCCEEEEEECCC---------CeEEEE
Confidence 11211 112233333 25666555443 33466777765 67899999998766655332 379999
Q ss_pred ECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEee
Q 004094 436 DDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTA 475 (774)
Q Consensus 436 d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~ 475 (774)
|..+++.+..+... +.+.++. +..+++ +++|+..
T Consensus 300 d~~~~~~~~~~~~~--~~~~~~~---~s~dg~-~l~v~~~ 333 (353)
T 3vgz_A 300 DAKSYKVVKTFDTP--THPNSLA---LSADGK-TLYVSVK 333 (353)
T ss_dssp ETTTTEEEEEEECC--SEEEEEE---ECTTSC-EEEEEEE
T ss_pred ECCCCeEEEEEecC--CCCCeEE---EcCCCC-EEEEEEc
Confidence 99999988877664 3555443 444444 4555443
No 118
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=96.99 E-value=0.34 Score=49.85 Aligned_cols=67 Identities=9% Similarity=0.085 Sum_probs=47.3
Q ss_pred EEEEeCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC
Q 004094 371 LAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 449 (774)
Q Consensus 371 l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~ 449 (774)
.+++..+.+.+..+.+ .-..+.++.+..|..++++++.+.+++.... ..|.++|..+++.+..+.++
T Consensus 269 ~l~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 269 QIYGVLNRLAKYDLKQ--RKLIKAANLDHTYYCVAFDKKGDKLYLGGTF----------NDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEEESEEEEEETTT--TEEEEEEECSSCCCEEEECSSSSCEEEESBS----------SEEEEEETTTTEEEEEEECS
T ss_pred EEEEEcCeEEEEECcc--CeEEEEEcCCCCccceEECCCCCEEEEecCC----------CeEEEEeccccceeeeeecC
Confidence 3333355666555443 3345677888899999999998776664221 47999999999988888776
No 119
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=96.98 E-value=0.54 Score=50.33 Aligned_cols=260 Identities=12% Similarity=0.061 Sum_probs=141.1
Q ss_pred ecCcEEEEecCCCceeeeEeCC-CCCcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCC
Q 004094 151 TSGSVRLVSSTSRELRNEWKSP-PGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIG 227 (774)
Q Consensus 151 T~~~i~l~~~~~~~~~~~~~~~-~~~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~ 227 (774)
..+.|++.+.++++........ .+..|++.+.+ +..++++..++.+..+.+..++.... .......+.|++..
T Consensus 123 ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~-~~~h~~~v~~~s~~--- 198 (420)
T 4gga_A 123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN-MTSHSARVGSLSWN--- 198 (420)
T ss_dssp ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEEE---
T ss_pred eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE-EeCCCCceEEEeeC---
Confidence 3677899998877665555432 23468888865 55888888888888888776554332 12345677888763
Q ss_pred CCCCCcceEEEEEecCCEEEEEECCCCC-eeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccc
Q 004094 228 ENPSYSQIAAVGMWTDISVRIFSLPDLN-LITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDR 306 (774)
Q Consensus 228 ~~~~~~~~~~vg~~~~~~i~i~~l~~~~-~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~ 306 (774)
...++.|.. ++.+.+|...... .+....-. ......+.. .....+|..+..||.+..|............
T Consensus 199 -----~~~l~sgs~-d~~i~~~d~~~~~~~~~~~~~h-~~~~~~~~~--~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~ 269 (420)
T 4gga_A 199 -----SYILSSGSR-SGHIHHHDVRVAEHHVATLSGH-SQEVCGLRW--APDGRHLASGGNDNLVNVWPSAPGEGGWVPL 269 (420)
T ss_dssp -----TTEEEEEET-TSEEEEEETTSSSCEEEEEECC-SSCEEEEEE--CTTSSEEEEEETTSCEEEEESSCCSSCSCCS
T ss_pred -----CCEEEEEeC-CCceeEeeecccceeeEEeccc-ccceeeeee--cCCCCeeeeeeccccceEEeeccccccceee
Confidence 456777776 9999999986532 22211110 011112211 1245678999999999998765432221111
Q ss_pred eeeecCCCCeEEEEEEeCCcceEEEe--c--CCCeEEEecC-CcEEEeeecccCceeeecccCCCCCCcEEEEe---CCe
Q 004094 307 KKVSLGTQPITLRTFSSKNTTHVFAA--S--DRPTVIYSSN-KKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAK---EGE 378 (774)
Q Consensus 307 ~~~~lG~~pv~l~~~~~~~~~~v~~~--~--~~p~~l~~~~-~~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~---~~~ 378 (774)
+...-...+|.-..+...+ ..++++ | |+...++... +.....-.....+.++. |.. ..+.++.+. ++.
T Consensus 270 ~~~~~~~~~V~~~~~~p~~-~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~-~~~--~~~~lv~~sg~~d~~ 345 (420)
T 4gga_A 270 QTFTQHQGAVKAVAWCPWQ-SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL-WSP--HYKELISGHGFAQNQ 345 (420)
T ss_dssp EEECCCSSCEEEEEECTTC-TTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEE-EET--TTTEEEEEECTTTCC
T ss_pred eeecccCCceeeeeeCCCc-ccEEEEEeecCCCEEEEEeCCccccceeeccccceeeee-ecC--CCCeEEEEEecCCCE
Confidence 2222223344443332222 233332 2 2333344332 22211111112222222 211 122345443 578
Q ss_pred EEEEEEcCCCCeEEEEEeC-CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCC
Q 004094 379 LTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQT 439 (774)
Q Consensus 379 l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~ 439 (774)
+.+..+++... +..+.- ...+..++++|+.+.++.++.+. .|++.|-..
T Consensus 346 I~iwd~~~~~~--v~~l~gH~~~V~~l~~spdg~~l~S~s~D~----------tvriWdv~~ 395 (420)
T 4gga_A 346 LVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAAADE----------TLRLWRCFE 395 (420)
T ss_dssp EEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCEEEEETTT----------EEEEECCSC
T ss_pred EEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEecCC----------eEEEEECCC
Confidence 99988876543 333432 23577899999988777666543 788877543
No 120
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=96.98 E-value=0.71 Score=51.74 Aligned_cols=277 Identities=10% Similarity=0.093 Sum_probs=155.8
Q ss_pred cceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecC
Q 004094 233 SQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLG 312 (774)
Q Consensus 233 ~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG 312 (774)
.+.++|....++.+.+++..+.+++...... ..|+.+.+.+ +..+|+++.++|.+..|.+...++ ...+.+..|
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t~--~~v~~i~~G 239 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEP--TTVAEIKIG 239 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECT--TSCEEEEEETTSEEEEEETTSSSC--CEEEEEECC
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECC--CCCEEEEEcCCCeEEEEECCCCCC--cEeEEEecC
Confidence 4567777777899999999888776654443 4577665543 456789999999888776532233 233456678
Q ss_pred CCCeEEEEEEe---CCcceEEEecCCC-eE-EEecC-Cc-EEEeeecccCce--------eeecccCCCCCCcEEEEe--
Q 004094 313 TQPITLRTFSS---KNTTHVFAASDRP-TV-IYSSN-KK-LLYSNVNLKEVS--------HMCPFNSAAFPDSLAIAK-- 375 (774)
Q Consensus 313 ~~pv~l~~~~~---~~~~~v~~~~~~p-~~-l~~~~-~~-~~~~~~~~~~i~--------~~~~f~~~~~~~~l~~~~-- 375 (774)
..|..+. +.- .+...+++.+..+ .+ ++... .+ +...++....+. .++.+........+++..
T Consensus 240 ~~P~~ia-~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 240 SEARSIE-TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp SEEEEEE-ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCceeE-EccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 8776543 221 1345677665433 22 22211 11 232332210000 011111111111233332
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEEC-CCCceE
Q 004094 376 EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPL-DTFEYG 454 (774)
Q Consensus 376 ~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~-~~~E~~ 454 (774)
.+.+.+........+.+..|+.+..|+-+.++++.+.++|++... ..|.++|.++.+.+..+.. ...-+.
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~s---------n~V~ViD~~t~kl~~~i~vgg~~Php 389 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANAR---------NKLVVIDTKEGKLVAIEDTGGQTPHP 389 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGG---------TEEEEEETTTTEEEEEEECSSSSBCC
T ss_pred CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCC---------CeEEEEECCCCcEEEEEeccCcCCCC
Confidence 466666665555567788999999999999999988888877442 3688999999998877766 321111
Q ss_pred EEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC-----eEEEEEEEeecCce-eEeccc-c-CeEEEEE-
Q 004094 455 CSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG-----KLQLIAEKETKGAV-YSLNAF-N-GKLLAAI- 525 (774)
Q Consensus 455 ~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~-----kl~~~~~~~~~g~v-~~i~~~-~-~~lv~~~- 525 (774)
-.-..+ +..+..++++.+. . ..|.|.+++.... .++.+...+..|+- ..|..- + .++++..
T Consensus 390 g~g~~~-~~p~~g~v~~t~~-~--------g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~ 459 (567)
T 1qks_A 390 GRGANF-VHPTFGPVWATSH-M--------GDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT 459 (567)
T ss_dssp TTCEEE-EETTTEEEEEEEB-S--------SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT
T ss_pred ccceee-ECCCCCcEEEeCC-C--------CCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecC
Confidence 011112 2222344443221 1 2367888887642 26666665554322 223322 3 4577766
Q ss_pred -------CCEEEEEEee
Q 004094 526 -------NQKIQLYKWM 535 (774)
Q Consensus 526 -------g~~l~v~~~~ 535 (774)
.+.|.+|+..
T Consensus 460 ~~~~~~~~~~v~v~d~~ 476 (567)
T 1qks_A 460 LNPEAEISGSVAVFDIK 476 (567)
T ss_dssp TCSSHHHHTCEEEEEGG
T ss_pred CCCCcccCceEEEEECC
Confidence 3589998864
No 121
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=96.94 E-value=0.11 Score=56.16 Aligned_cols=254 Identities=11% Similarity=0.101 Sum_probs=127.1
Q ss_pred eEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCC----------CCeeEEecCCCccCceeEEee
Q 004094 205 ILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD----------LNLITKEHLGGEIIPRSVLLC 274 (774)
Q Consensus 205 ~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~----------~~~~~~~~l~~~~~p~si~~~ 274 (774)
++...........|+++++.+. ...+++.|.. +|.|.+|++.. ...+....-. ...+.++.+.
T Consensus 118 ~~~~~~~~~h~~~v~~l~~~p~-----~~~~lat~~~-dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~ 190 (430)
T 2xyi_A 118 KIEIEIKINHEGEVNRARYMPQ-----NACVIATKTP-SSDVLVFDYTKHPSKPEPSGECQPDLRLRGH-QKEGYGLSWN 190 (430)
T ss_dssp CEEEEEEEEESSCCSEEEEETT-----EEEEEEEECS-SSCEEEEEGGGSCSSCCTTCCCCCSEEEECC-SSCCCCEEEC
T ss_pred ceEEEEEEcCCCcEEEEEECCC-----CCcEEEEECC-CCcEEEEECCCcccccCccccCCCcEEecCC-CCCeEEEEeC
Confidence 4443344556778999998651 1456777666 99999999864 2222211110 1123344333
Q ss_pred eecCeeEEEEEeCCCcEEEEEEecCCCc---cccceeeecCCCCeEEEEEEeCCcceEEEe-c-CCCeEEEecC-C---c
Q 004094 275 AFEGISYLLCALGDGHLLNFLLNMKTGE---LTDRKKVSLGTQPITLRTFSSKNTTHVFAA-S-DRPTVIYSSN-K---K 345 (774)
Q Consensus 275 ~~~~~~~L~vgl~~G~l~~y~~~~~~~~---l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~-~-~~p~~l~~~~-~---~ 345 (774)
+. +..+|+.|..||.+..|.+...... +...+...-...++.-..+... ...+|++ + +....++..+ + +
T Consensus 191 ~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~ 268 (430)
T 2xyi_A 191 PN-LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSK 268 (430)
T ss_dssp TT-STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSS
T ss_pred CC-CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCc
Confidence 21 2237899999999999987652111 1111111111233333333211 2334443 3 3333344332 1 1
Q ss_pred -EEEeeecccCceeeecccCCCCCCcEE-EE-eCCeEEEEEEcCCCCeEEEEEe-CCCcccEEEEecCCCEEEEEEeccC
Q 004094 346 -LLYSNVNLKEVSHMCPFNSAAFPDSLA-IA-KEGELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLKNQ 421 (774)
Q Consensus 346 -~~~~~~~~~~i~~~~~f~~~~~~~~l~-~~-~~~~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~~~ 421 (774)
+.........+.+++ |+. ....++ .. .++.+++..+..... ....+. -...+..+.++|..+.+++.+...
T Consensus 269 ~~~~~~~~~~~v~~i~-~~p--~~~~~l~tg~~dg~v~vwd~~~~~~-~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d- 343 (430)
T 2xyi_A 269 PSHTVDAHTAEVNCLS-FNP--YSEFILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTD- 343 (430)
T ss_dssp CSEEEECCSSCEEEEE-ECS--SCTTEEEEEETTSEEEEEETTCTTS-CSEEEECCSSCEEEEEECSSCTTEEEEEETT-
T ss_pred ceeEeecCCCCeEEEE-eCC--CCCCEEEEEeCCCeEEEEeCCCCCC-CeEEeecCCCCEEEEEECCCCCCEEEEEeCC-
Confidence 111111223344433 321 112233 33 368899998876432 223333 345678899999886544444332
Q ss_pred CCCCceeeeEEEEEECCCc--------------eEEEEEECCC-CceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcc
Q 004094 422 SCAEESEMHFVRLLDDQTF--------------EFISTYPLDT-FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTK 486 (774)
Q Consensus 422 ~~~~~~~~~~l~l~d~~~~--------------~~i~~~~~~~-~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~ 486 (774)
..|+++|..+. +.+. .+.. ...+.++. +..++..+++.|. ..
T Consensus 344 --------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~---~~p~~~~~l~s~s----------~d 400 (430)
T 2xyi_A 344 --------RRLHVWDLSKIGEEQSTEDAEDGPPELLF--IHGGHTAKISDFS---WNPNEPWIICSVS----------ED 400 (430)
T ss_dssp --------SCCEEEEGGGTTCCCCHHHHHHCCTTEEE--ECCCCSSCEEEEE---ECSSSTTEEEEEE----------TT
T ss_pred --------CcEEEEeCCCCccccCccccccCCcceEE--EcCCCCCCceEEE---ECCCCCCEEEEEE----------CC
Confidence 25777776441 2222 2322 23455553 3433333555554 34
Q ss_pred eEEEEEEEe
Q 004094 487 GRILVFIVE 495 (774)
Q Consensus 487 Grl~v~~i~ 495 (774)
|.|.+|++.
T Consensus 401 g~i~iw~~~ 409 (430)
T 2xyi_A 401 NIMQVWQMA 409 (430)
T ss_dssp SEEEEEEEC
T ss_pred CCEEEeEcc
Confidence 899999987
No 122
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=96.90 E-value=0.29 Score=49.98 Aligned_cols=259 Identities=11% Similarity=0.060 Sum_probs=135.4
Q ss_pred cCcEEEEecCCCceeeeEeCCCCC-cEEEEEEC--CCEEEEEEc-CCeEEEEEEcCceEEEEEeccCCc------eeEEE
Q 004094 152 SGSVRLVSSTSRELRNEWKSPPGY-SVNVATAN--ASQVLLATG-GGHLVYLEIGDGILTEVKHAQLEY------EISCL 221 (774)
Q Consensus 152 ~~~i~l~~~~~~~~~~~~~~~~~~-~I~~a~~~--~~~lvv~~~-~~~~~~~~~~~~~l~~~~~~~l~~------~is~l 221 (774)
...|++++.++++.+..+..+... .+...+.+ +..++++.. ++.+..+.+..++.... ..... .+.++
T Consensus 10 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~ 87 (337)
T 1pby_B 10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR--IDLSTPEERVKSLFGA 87 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE--EECCBTTEEEECTTCE
T ss_pred CCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEee--EEcCCcccccccccce
Confidence 355677777665555555543311 24444544 446666654 45676666655443322 22222 45667
Q ss_pred EeCCCCCCCCCcceEEEEE--------e---cCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCc
Q 004094 222 DINPIGENPSYSQIAAVGM--------W---TDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGH 290 (774)
Q Consensus 222 ~~~~~~~~~~~~~~~~vg~--------~---~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~ 290 (774)
++++ ....++++. | .++.|.+|++.+.+.+.....+ ..|..+.+.+ +..+|+++ +|.
T Consensus 88 ~~s~------dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~--dg~~l~~~--~~~ 155 (337)
T 1pby_B 88 ALSP------DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWAR--DGSKLYGL--GRD 155 (337)
T ss_dssp EECT------TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECT--TSSCEEEE--SSS
T ss_pred EECC------CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeEECC--CCCEEEEe--CCe
Confidence 7754 145677764 1 3689999999876665433332 3466665443 33456666 688
Q ss_pred EEEEEEecCCCccccceeeecCC--CCeEEEEEEeCCcceEEEecCCC-------------------------eEEEec-
Q 004094 291 LLNFLLNMKTGELTDRKKVSLGT--QPITLRTFSSKNTTHVFAASDRP-------------------------TVIYSS- 342 (774)
Q Consensus 291 l~~y~~~~~~~~l~~~~~~~lG~--~pv~l~~~~~~~~~~v~~~~~~p-------------------------~~l~~~- 342 (774)
+..|.+. ++++. +....+. .|+.+.+ +...+++.+... ..++..
T Consensus 156 i~~~d~~--~~~~~--~~~~~~~~~~~~~~s~----dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 227 (337)
T 1pby_B 156 LHVMDPE--AGTLV--EDKPIQSWEAETYAQP----DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE 227 (337)
T ss_dssp EEEEETT--TTEEE--EEECSTTTTTTTBCCC----BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred EEEEECC--CCcEe--eeeeccccCCCceeCC----CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC
Confidence 7776543 33321 1222222 3332221 111222222111 011111
Q ss_pred CCcEEEeeecc--cCceeeecccCCCCCC-cEEEEeCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEec
Q 004094 343 NKKLLYSNVNL--KEVSHMCPFNSAAFPD-SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK 419 (774)
Q Consensus 343 ~~~~~~~~~~~--~~i~~~~~f~~~~~~~-~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~ 419 (774)
.+++...+... ..+.+ ..|+ |+ ..+++.++.+.+..+.+ .-..+.++.+..|..++++|+.+.+++++..
T Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~s----~dg~~l~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 300 (337)
T 1pby_B 228 TGEMAMREVRIMDVFYFS-TAVN----PAKTRAFGAYNVLESFDLEK--NASIKRVPLPHSYYSVNVSTDGSTVWLGGAL 300 (337)
T ss_dssp TCCEEEEEEEECSSCEEE-EEEC----TTSSEEEEEESEEEEEETTT--TEEEEEEECSSCCCEEEECTTSCEEEEESBS
T ss_pred CCCceEeecCCCCCceee-EEEC----CCCCEEEEeCCeEEEEECCC--CcCcceecCCCceeeEEECCCCCEEEEEcCC
Confidence 12221111110 01111 1121 23 34555567777776654 2345778888899999999998876665322
Q ss_pred cCCCCCceeeeEEEEEECCCceEEEEEECC
Q 004094 420 NQSCAEESEMHFVRLLDDQTFEFISTYPLD 449 (774)
Q Consensus 420 ~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~ 449 (774)
..|.++|..+++.+..+...
T Consensus 301 ----------~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 301 ----------GDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp ----------SEEEEEETTTCCEEEEEECG
T ss_pred ----------CcEEEEECcCCcEEEEEEcC
Confidence 47999999998888777664
No 123
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=96.90 E-value=0.41 Score=49.04 Aligned_cols=117 Identities=14% Similarity=0.089 Sum_probs=73.8
Q ss_pred CcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEE-eccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEEC
Q 004094 175 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVK-HAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL 251 (774)
Q Consensus 175 ~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~-~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l 251 (774)
..|.+++.+ +..++.+..++.+..+.+..++...+. -......|.++++.+-. ....++.|.+ |+.++||++
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~----~~~~l~s~s~-D~~v~iWd~ 88 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM----YGNILASCSY-DRKVIIWRE 88 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG----GSSCEEEEET-TSCEEEECC
T ss_pred CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC----CCCEEEEEEC-CCEEEEEEC
Confidence 457777765 446666666788888887664322221 12456789999985311 1456777777 999999998
Q ss_pred CCCC--eeEEecCCC-ccCceeEEeeeecCeeEEEEEeCCCcEEEEEEec
Q 004094 252 PDLN--LITKEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 252 ~~~~--~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 298 (774)
.+.+ .+.. +.. .....++.+.+-....+|..|..||.+..|.+..
T Consensus 89 ~~~~~~~~~~--~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~ 136 (316)
T 3bg1_A 89 ENGTWEKSHE--HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG 136 (316)
T ss_dssp SSSCCCEEEE--ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred CCCcceEEEE--ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence 7642 2221 211 1234455554322245788999999999998764
No 124
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=96.88 E-value=0.13 Score=55.52 Aligned_cols=199 Identities=12% Similarity=0.074 Sum_probs=110.8
Q ss_pred CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCce-----------EEEEEECCC-----------CceEEE
Q 004094 399 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFE-----------FISTYPLDT-----------FEYGCS 456 (774)
Q Consensus 399 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~-----------~i~~~~~~~-----------~E~~~s 456 (774)
..+..++|+|+.+.++.++.+ ..|+++|..+.+ .+..+.-.. .+.+.+
T Consensus 29 ~~V~~v~~s~~g~~la~g~~d----------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~ 98 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKG----------GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINK 98 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETT----------SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCE
T ss_pred CcEEEEEECCCCCEEEEEcCC----------CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEE
Confidence 467788999988887777654 378888766544 344333211 144666
Q ss_pred EEEEEEcCCC-ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEE-----------------------------------
Q 004094 457 ILSCSFSDDS-NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQ----------------------------------- 500 (774)
Q Consensus 457 i~~~~~~~~~-~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~----------------------------------- 500 (774)
++ +..++ ..+++.|+. .|.|.+|++..++.+
T Consensus 99 l~---~~~~~~~~~l~s~s~----------d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 165 (447)
T 3dw8_B 99 IR---WLPQKNAAQFLLSTN----------DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVE 165 (447)
T ss_dssp EE---ECCCCSSSEEEEEEC----------SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEE
T ss_pred EE---EcCCCCcceEEEeCC----------CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeee
Confidence 54 33332 267777752 378899988743321
Q ss_pred ----EEEEEeecCceeEeccc-cC-eEEEEECCEEEEEEeeecCCCchhhh-------hhcccccceEEEEEEEeC-CEE
Q 004094 501 ----LIAEKETKGAVYSLNAF-NG-KLLAAINQKIQLYKWMLRDDGTRELQ-------SECGHHGHILALYVQTRG-DFI 566 (774)
Q Consensus 501 ----~~~~~~~~g~v~~i~~~-~~-~lv~~~g~~l~v~~~~~~~~~~~~l~-------~~~~~~~~~~~~~l~~~~-~~I 566 (774)
......+.++|++++-. ++ +|+.+....|++|++.. +...+. ....+...+..+.....+ +++
T Consensus 166 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 242 (447)
T 3dw8_B 166 ASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEI---TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTF 242 (447)
T ss_dssp EEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTE---EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEE
T ss_pred ccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCC---CCceeeeeecccccccccCcceEEEEECCCCCcEE
Confidence 01122457788888754 33 46666667899987631 111111 011112222233333345 789
Q ss_pred EEEeccccEEEEEEEccCCe-----EEEEeccCCc----------ceeEEEEEeeCCe-EEEEccCCcEEEEeeCC
Q 004094 567 VVGDLMKSISLLIYKHEEGA-----IEERARDYNA----------NWMSAVEILDDDI-YLGAENNFNLFTVRKNS 626 (774)
Q Consensus 567 ~vgD~~~Sv~~~~~~~~~~~-----l~~~a~D~~~----------~~v~~~~~l~~~~-~l~~D~~gnl~~l~~~~ 626 (774)
++|..-..|.++ +....+ +..+.....+ ..++++.+-.++. +++++. |.+.+++...
T Consensus 243 ~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 243 VYSSSKGTIRLC--DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp EEEETTSCEEEE--ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred EEEeCCCeEEEE--ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence 999988888775 433322 2222211110 1677777766555 445555 9999998864
No 125
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.86 E-value=0.19 Score=53.13 Aligned_cols=283 Identities=12% Similarity=0.086 Sum_probs=143.0
Q ss_pred CcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECC
Q 004094 175 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 252 (774)
Q Consensus 175 ~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~ 252 (774)
..|.+.+.+ +..++.+..++.+..+.+..++....- ......|.++++.+ ...+++.|.+ |+.+.||++.
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~------~g~~las~~~-d~~v~iw~~~ 138 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAP------NGQSVACGGL-DSACSIFNLS 138 (380)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECT------TSSEEEECCS-SSCCEEEECC
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE-ecCCCCEEEEEECC------CCCEEEEeeC-CCcEEEEECC
Confidence 356666655 335666666778877776554432221 12345677888865 2567888888 9999999986
Q ss_pred CCCeeE-----EecCCC-ccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccc--eeeecC-CCCeEEEEEEe
Q 004094 253 DLNLIT-----KEHLGG-EIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDR--KKVSLG-TQPITLRTFSS 323 (774)
Q Consensus 253 ~~~~~~-----~~~l~~-~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~--~~~~lG-~~pv~l~~~~~ 323 (774)
...... ...+.. .....++.+.+ .+...|+.|..||.+..|.+.. +..... .....| ..++.-..+..
T Consensus 139 ~~~~~~~~~~~~~~~~gh~~~v~~~~~~~-~~~~~l~s~s~D~~i~~wd~~~--~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 139 SQADRDGNMPVSRVLTGHKGYASSCQYVP-DQETRLITGSGDQTCVLWDVTT--GQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCSSCCCSSTTCCBCCCCSSCCCCCBCCS-SSSSCEEEECTTSCEEEECTTT--CCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCccccCCccceeeccCCCcceEEEEEec-CCCCEEEEECCCCcEEEEEcCC--CcEEEEeecccCCCCccCeEEEEeec
Confidence 421100 001110 01112222221 1234688999999999987643 221100 000011 12222222211
Q ss_pred CCcceEEEec--CCCeEEEecC--Cc-EEEeeecccCceeeecccCCCCCCcEEEE-eCCeEEEEEEcCCCCeEEEEEeC
Q 004094 324 KNTTHVFAAS--DRPTVIYSSN--KK-LLYSNVNLKEVSHMCPFNSAAFPDSLAIA-KEGELTIGTIDDIQKLHIRSIPL 397 (774)
Q Consensus 324 ~~~~~v~~~~--~~p~~l~~~~--~~-~~~~~~~~~~i~~~~~f~~~~~~~~l~~~-~~~~l~i~~l~~~~~~~~~~i~l 397 (774)
. ....|++| +....++.-+ ++ +....-+...|.+++ |+. ....|+.. .++.+++..+.....+..-....
T Consensus 216 ~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~-~~p--~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~ 291 (380)
T 3iz6_a 216 L-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVK-FFP--DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP 291 (380)
T ss_dssp S-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEE-ECT--TSSEEEEECSSSCEEEEETTTTEEEEEECCCC
T ss_pred C-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEE-Eec--CCCeEEEEcCCCeEEEEECCCCcEEEEecccc
Confidence 1 22334333 3333344322 11 211111223344433 211 11223333 36788888877643322211111
Q ss_pred C------CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEEC---CCCceEEEEEEEEEcCCCce
Q 004094 398 G------EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPL---DTFEYGCSILSCSFSDDSNV 468 (774)
Q Consensus 398 ~------~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~---~~~E~~~si~~~~~~~~~~~ 468 (774)
. ..+..++|+|..+.++.++.+ ..+++.|..+.+.+..+.. .....+.|+. +.. ...
T Consensus 292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~d----------g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~---~s~-dg~ 357 (380)
T 3iz6_a 292 DRNDNELPIVTSVAFSISGRLLFAGYSN----------GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLG---LSS-DGS 357 (380)
T ss_dssp SSSCCSSCSCSEEEECSSSSEEEEECTT----------SCEEEEETTTCCEEEEECCSCSSCCCCCCEEE---ECS-SSS
T ss_pred cccccccCceEEEEECCCCCEEEEEECC----------CCEEEEECCCCceEEEEecccCCCCCceEEEE---ECC-CCC
Confidence 1 125789999998877776644 3699999888777665522 1223455554 443 345
Q ss_pred EEEEEeeeeCCCCCCCcceEEEEEEEeC
Q 004094 469 YYCVGTAYVLPEENEPTKGRILVFIVED 496 (774)
Q Consensus 469 ~i~VGT~~~~~~e~~~~~Grl~v~~i~~ 496 (774)
+++.|. ..|.|.+|++..
T Consensus 358 ~l~sgs----------~D~~i~iW~~~~ 375 (380)
T 3iz6_a 358 ALCTGS----------WDKNLKIWAFSG 375 (380)
T ss_dssp EEEEEC----------TTSCEEEEECCS
T ss_pred EEEEee----------CCCCEEEEecCC
Confidence 677665 237899998764
No 126
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.85 E-value=0.067 Score=56.30 Aligned_cols=183 Identities=13% Similarity=0.002 Sum_probs=94.8
Q ss_pred cEEEEe-CCeEEEEEEcCCCCe-EEEE-EeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCce---EE
Q 004094 370 SLAIAK-EGELTIGTIDDIQKL-HIRS-IPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFE---FI 443 (774)
Q Consensus 370 ~l~~~~-~~~l~i~~l~~~~~~-~~~~-i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~---~i 443 (774)
.++... ++.+++..+.....+ .... ..-...+..++++|+.+.++.++.+. .++++|..+.+ .+
T Consensus 69 ~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----------~i~iwd~~~~~~~~~~ 138 (377)
T 3dwl_C 69 RIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR----------VISVCYFEQENDWWVS 138 (377)
T ss_dssp CEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSS----------CEEECCC-----CCCC
T ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCC----------eEEEEEECCcccceee
Confidence 455444 678888888765412 1222 23345678899999888777776543 67887775543 23
Q ss_pred EEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC----------------eEEEEEEEee
Q 004094 444 STYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG----------------KLQLIAEKET 507 (774)
Q Consensus 444 ~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~----------------kl~~~~~~~~ 507 (774)
..+.-.....+.++. +.. ...+++.|+. .|.+.+|++... .-+.+.....
T Consensus 139 ~~~~~~h~~~v~~~~---~~~-~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (377)
T 3dwl_C 139 KHLKRPLRSTILSLD---WHP-NNVLLAAGCA----------DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPS 204 (377)
T ss_dssp EEECSSCCSCEEEEE---ECT-TSSEEEEEES----------SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCC
T ss_pred eEeecccCCCeEEEE---EcC-CCCEEEEEeC----------CCEEEEEEEEecccCCCccccccccccchhhhhhcccC
Confidence 444332445566654 333 3467777762 378999998521 1233333366
Q ss_pred cCceeEeccc-cCe-EEEEE-CCEEEEEEeeecCCCch--h-hhhhcccccceEEEEEEEeCCEEEEEeccccEEEEEE
Q 004094 508 KGAVYSLNAF-NGK-LLAAI-NQKIQLYKWMLRDDGTR--E-LQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIY 580 (774)
Q Consensus 508 ~g~v~~i~~~-~~~-lv~~~-g~~l~v~~~~~~~~~~~--~-l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~ 580 (774)
.++|++++-- ++. |+.+. .+.|++|++.. +.. + +.....+...+..+.....+.+++.|. .+++.++..
T Consensus 205 ~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~~~~~ 279 (377)
T 3dwl_C 205 GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA---PEQPPRALITVKLSQLPLRSLLWANESAIVAAGY-NYSPILLQG 279 (377)
T ss_dssp SSSEEEEEECTTSSCEEEEETTTEEC-CEECS---TTSCEEECCCEECSSSCEEEEEEEETTEEEEEES-SSSEEEECC
T ss_pred CceEEEEEECCCCCEEEEEeCCCcEEEEECCC---CCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc-CCcEEEEEe
Confidence 8889998854 344 55444 46889988642 211 0 111122222233333444555666664 555555443
No 127
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.83 E-value=0.56 Score=48.31 Aligned_cols=213 Identities=14% Similarity=0.049 Sum_probs=118.3
Q ss_pred EEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCce-------
Q 004094 381 IGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEY------- 453 (774)
Q Consensus 381 i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~------- 453 (774)
+..++....-..+.++.+..|..++++++.+.++++.... ..|.++|..+.+.+..+.......
T Consensus 71 v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~---------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 141 (353)
T 3vgz_A 71 VYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVN---------SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPL 141 (353)
T ss_dssp EEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTT---------TEEEEEETTTCCEEEEEESCCCCCCSSCCCC
T ss_pred EEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCC---------CEEEEEeCCCCeeEEEEecCCCccccccCCC
Confidence 3344443344677788888899999999988666665432 379999999999988888754332
Q ss_pred -EEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEe-ecCceeEeccc--cCeEEEEEC-CE
Q 004094 454 -GCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE-TKGAVYSLNAF--NGKLLAAIN-QK 528 (774)
Q Consensus 454 -~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~-~~g~v~~i~~~--~~~lv~~~g-~~ 528 (774)
+.++ .+..+++ +++++... ..|+|++|+...+++... .. ....+.+++-- +++|+++.. +.
T Consensus 142 ~~~~~---~~s~dg~-~l~~~~~~--------~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 207 (353)
T 3vgz_A 142 QPREL---VADDATN-TVYISGIG--------KESVIWVVDGGNIKLKTA--IQNTGKMSTGLALDSEGKRLYTTNADGE 207 (353)
T ss_dssp EEEEE---EEETTTT-EEEEEEES--------SSCEEEEEETTTTEEEEE--ECCCCTTCCCCEEETTTTEEEEECTTSE
T ss_pred CCceE---EECCCCC-EEEEEecC--------CCceEEEEcCCCCceEEE--ecCCCCccceEEECCCCCEEEEEcCCCe
Confidence 3333 3444444 45554421 247899998876654432 23 22235555433 344655543 57
Q ss_pred EEEEEeeecCCCchhhhhhccc-----ccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEE
Q 004094 529 IQLYKWMLRDDGTRELQSECGH-----HGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVE 603 (774)
Q Consensus 529 l~v~~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~ 603 (774)
+++++.. .+ ++...... ......+.+...++++++++...+- +..|+.+..++...-.-..+. ++.
T Consensus 208 i~~~d~~---~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~~~~~~~~---~~~ 278 (353)
T 3vgz_A 208 LITIDTA---DN--KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE-VLVVDTRNGNILAKVAAPESL---AVL 278 (353)
T ss_dssp EEEEETT---TT--EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE-EEEEETTTCCEEEEEECSSCC---CEE
T ss_pred EEEEECC---CC--eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE-EEEEECCCCcEEEEEEcCCCc---eEE
Confidence 7776532 22 22211111 1112223444457899999876442 345676655543222222222 233
Q ss_pred EeeCCe-EEEEc-cCCcEEEEeeC
Q 004094 604 ILDDDI-YLGAE-NNFNLFTVRKN 625 (774)
Q Consensus 604 ~l~~~~-~l~~D-~~gnl~~l~~~ 625 (774)
+-.++. +++++ .++.+.++...
T Consensus 279 ~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 279 FNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETT
T ss_pred ECCCCCEEEEEECCCCeEEEEECC
Confidence 333333 55555 57888888754
No 128
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.83 E-value=0.087 Score=53.63 Aligned_cols=245 Identities=12% Similarity=0.105 Sum_probs=133.1
Q ss_pred cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCC--ceEEEEEECCCCceEEEEEEEEEcCC-CceEEEEEeee
Q 004094 400 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQT--FEFISTYPLDTFEYGCSILSCSFSDD-SNVYYCVGTAY 476 (774)
Q Consensus 400 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~--~~~i~~~~~~~~E~~~si~~~~~~~~-~~~~i~VGT~~ 476 (774)
.++.++|+++.+.++.++.+. .+++.|..+ .+.+.++.- ....+.++. +..+ ...+++.|.
T Consensus 11 ~V~~~~~s~~g~~las~s~D~----------~v~iw~~~~~~~~~~~~l~g-H~~~V~~v~---~s~~~~g~~l~s~s-- 74 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDK----------TIKIFEVEGETHKLIDTLTG-HEGPVWRVD---WAHPKFGTILASCS-- 74 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTS----------CEEEEEBCSSCBCCCEEECC-CSSCEEEEE---ECCGGGCSEEEEEE--
T ss_pred ceEEEEECCCCCEEEEEeCCC----------EEEEEecCCCCcEEEEEEcc-ccCCeEEEE---ecCCCcCCEEEEEc--
Confidence 456788999888777776553 688888643 333443322 223455553 4321 235677665
Q ss_pred eCCCCCCCcceEEEEEEEeCCeEEEEEEE-eecCceeEecccc---Ce-EEEE-ECCEEEEEEeeecCCCchhhhhhccc
Q 004094 477 VLPEENEPTKGRILVFIVEDGKLQLIAEK-ETKGAVYSLNAFN---GK-LLAA-INQKIQLYKWMLRDDGTRELQSECGH 550 (774)
Q Consensus 477 ~~~~e~~~~~Grl~v~~i~~~kl~~~~~~-~~~g~v~~i~~~~---~~-lv~~-~g~~l~v~~~~~~~~~~~~l~~~~~~ 550 (774)
..|.+.+|++..++.+.+... ...++|.+++-.. +. |+++ ..++|++|++.. ...........+
T Consensus 75 --------~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~--~~~~~~~~~~~h 144 (297)
T 2pm7_B 75 --------YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE--NGTTSPIIIDAH 144 (297)
T ss_dssp --------TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS--SSCBCCEEEECC
T ss_pred --------CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecC--CCceeeeeeecc
Confidence 238999999986543333322 3578899887542 44 4433 347899988642 111111101111
Q ss_pred ccceEEEEEEEe---------------CCEEEEEeccccEEEEEEEccCCeEEEEe-ccCCcceeEEEEEeeC----CeE
Q 004094 551 HGHILALYVQTR---------------GDFIVVGDLMKSISLLIYKHEEGAIEERA-RDYNANWMSAVEILDD----DIY 610 (774)
Q Consensus 551 ~~~~~~~~l~~~---------------~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a-~D~~~~~v~~~~~l~~----~~~ 610 (774)
.. .+.++... +++++.|..-..|.++.++.......... -..+..+|.++.|-.+ ..+
T Consensus 145 ~~--~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~l 222 (297)
T 2pm7_B 145 AI--GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYM 222 (297)
T ss_dssp SS--CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred cC--ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEE
Confidence 11 12223322 45888999888998877765443322221 1234567888877654 245
Q ss_pred EEEccCCcEEEEeeCCCCCCccccceeeeEEEEEcCcccceEEeeeeeecCCCCCCCCccEEEEEccccceEEEEec
Q 004094 611 LGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASL 687 (774)
Q Consensus 611 l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gsi~~i~~l 687 (774)
+.+..+|.+.++..+.....- ...+.. .-.....|.++. +. .....++.++.+|.|.....-
T Consensus 223 as~s~D~~v~iWd~~~~~~~~--~~~~~~--~~~~~~~v~~~~---~s--------~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 223 ASVSQDRTCIIWTQDNEQGPW--KKTLLK--EEKFPDVLWRAS---WS--------LSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEETTSCEEEEEESSTTSCC--EEEESS--SSCCSSCEEEEE---EC--------SSSCCEEEEETTSCEEEEEEC
T ss_pred EEEECCCcEEEEEeCCCCCcc--ceeeee--cccCCCcEEEEE---EC--------CCCCEEEEEcCCCcEEEEEEC
Confidence 677889999999886421100 000100 001123343332 21 124567778889998876543
No 129
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.83 E-value=0.51 Score=47.74 Aligned_cols=243 Identities=14% Similarity=0.118 Sum_probs=121.8
Q ss_pred CcEEEEEEC--CCEEEEEEcCCeEEEEEEcCc--eE-EEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEE
Q 004094 175 YSVNVATAN--ASQVLLATGGGHLVYLEIGDG--IL-TEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249 (774)
Q Consensus 175 ~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~--~l-~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~ 249 (774)
..|.+++.+ +..++.+..++.+..+++..+ ++ ..+ ......|.|+++.+-. ....++.|.+ |++++||
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l--~gH~~~V~~v~~s~~~----~g~~l~s~s~-D~~v~iW 82 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL--TGHEGPVWRVDWAHPK----FGTILASCSY-DGKVMIW 82 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE--CCCSSCEEEEEECCGG----GCSEEEEEET-TTEEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE--ccccCCeEEEEecCCC----cCCEEEEEcC-CCEEEEE
Confidence 356666655 446666666777877777532 21 122 2356789999985311 1456777777 9999999
Q ss_pred ECCCCC--eeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCC--
Q 004094 250 SLPDLN--LITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKN-- 325 (774)
Q Consensus 250 ~l~~~~--~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~-- 325 (774)
++.+.+ .+..... ......++.+.+-....+|++|..||.+..|.+.... ... .....-...++.-..+....
T Consensus 83 d~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~-~~~-~~~~~~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 83 KEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENG-TTS-PIIIDAHAIGVNSASWAPATIE 159 (297)
T ss_dssp EBSSSCBCCCEEECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSS-CBC-CEEEECCSSCEEEEEECCCC--
T ss_pred EcCCCceEEEEEeec-CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCC-cee-eeeeecccCccceEeecCCccc
Confidence 997532 2221111 0122344544432224578999999999999876431 110 11111111222211221110
Q ss_pred ---------cceEEEec--CCCeEEEec-CCc--EE-Eeeec--ccCceeeecccCCCC-CCcEEEEe-CCeEEEEEEcC
Q 004094 326 ---------TTHVFAAS--DRPTVIYSS-NKK--LL-YSNVN--LKEVSHMCPFNSAAF-PDSLAIAK-EGELTIGTIDD 386 (774)
Q Consensus 326 ---------~~~v~~~~--~~p~~l~~~-~~~--~~-~~~~~--~~~i~~~~~f~~~~~-~~~l~~~~-~~~l~i~~l~~ 386 (774)
....+++| +....++.. .+. .. ...+. ...+.+++ |+.... ...++..+ ++.+++..+..
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~-~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA-WSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE-ECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEE-ECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 01233333 333333321 111 11 11111 12333332 322111 12233333 68899999876
Q ss_pred CC-CeEEEEE---eCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECC
Q 004094 387 IQ-KLHIRSI---PLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQ 438 (774)
Q Consensus 387 ~~-~~~~~~i---~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~ 438 (774)
.. .+..+.+ .....+..++++|..+.++.++.+. .+++.+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~----------~v~lw~~~ 284 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN----------KVTLWKEN 284 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS----------CEEEEEEC
T ss_pred CCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC----------cEEEEEEC
Confidence 43 2222222 1234567789999988877776543 57777653
No 130
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.068 Score=62.68 Aligned_cols=231 Identities=11% Similarity=0.072 Sum_probs=132.5
Q ss_pred cEEEE-eCCeEEEEEEcCCCCeEEEEEeC-CCcccEEEEecC--CCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEE
Q 004094 370 SLAIA-KEGELTIGTIDDIQKLHIRSIPL-GEHPRRICHQEQ--SRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 445 (774)
Q Consensus 370 ~l~~~-~~~~l~i~~l~~~~~~~~~~i~l-~~tp~~i~y~~~--~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~ 445 (774)
.++.. .++.+++..+.....-..+.+.- ...+..+.+++. .+.++.++.+ +.|++.|..+.+....
T Consensus 23 ~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D----------g~I~vwd~~~~~~~~~ 92 (753)
T 3jro_A 23 RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD----------GKVLIWKEENGRWSQI 92 (753)
T ss_dssp CEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT----------SCEEEEEEETTEEEEE
T ss_pred eEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC----------CeEEEEECCCCccccc
Confidence 34444 36788888887543333444432 345678888876 6666666544 3688888766653222
Q ss_pred EECC-CCceEEEEEEEEEcCCC-ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe-EEEEEEEeecCceeEecccc----
Q 004094 446 YPLD-TFEYGCSILSCSFSDDS-NVYYCVGTAYVLPEENEPTKGRILVFIVEDGK-LQLIAEKETKGAVYSLNAFN---- 518 (774)
Q Consensus 446 ~~~~-~~E~~~si~~~~~~~~~-~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~k-l~~~~~~~~~g~v~~i~~~~---- 518 (774)
..+. ....+.++. +..+. ..++++|+ ..|.+.+|++..++ ..........++|++++-..
T Consensus 93 ~~~~~h~~~V~~v~---~sp~~~~~~l~sgs----------~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 93 AVHAVHSASVNSVQ---WAPHEYGPLLLVAS----------SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (753)
T ss_dssp EEECCCSSCEEEEE---ECCGGGCSEEEEEE----------TTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred ccccCCCCCeEEEE---ECCCCCCCEEEEEe----------CCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence 2232 334555554 33321 56788786 34899999998542 22233345678888887543
Q ss_pred ----------Ce-EEEEE-CCEEEEEEeeecCCCchhhhh-hcccccceEEEEEEE--e---CCEEEEEeccccEEEEEE
Q 004094 519 ----------GK-LLAAI-NQKIQLYKWMLRDDGTRELQS-ECGHHGHILALYVQT--R---GDFIVVGDLMKSISLLIY 580 (774)
Q Consensus 519 ----------~~-lv~~~-g~~l~v~~~~~~~~~~~~l~~-~~~~~~~~~~~~l~~--~---~~~I~vgD~~~Sv~~~~~ 580 (774)
+. ++++. .+.|++|++.... ...++.. ...+.. .+.++.. . +++++.|+.-..+.++..
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~~~~h~~--~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-QTYVLESTLEGHSD--WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTT-TEEEEEEEECCCSS--CEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCc-ccceeeeeecCCCC--cEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence 33 55444 4688998864211 0001111 111122 2344444 3 678889998888888665
Q ss_pred EccCCe--EEEEeccCCcceeEEEEEeeCC-eEEEEccCCcEEEEeeCC
Q 004094 581 KHEEGA--IEERARDYNANWMSAVEILDDD-IYLGAENNFNLFTVRKNS 626 (774)
Q Consensus 581 ~~~~~~--l~~~a~D~~~~~v~~~~~l~~~-~~l~~D~~gnl~~l~~~~ 626 (774)
...... ............++++.+-.++ .++++..+|.+.+++.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 443211 1112222345566677765554 466778899999999874
No 131
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.65 E-value=2.1 Score=52.30 Aligned_cols=174 Identities=10% Similarity=0.112 Sum_probs=98.9
Q ss_pred ceEEEEEEEeCCeEEEEEEEee--cCceeEeccc------cCeEEEEEC-----------CEEEEEEeeecCCCchhhhh
Q 004094 486 KGRILVFIVEDGKLQLIAEKET--KGAVYSLNAF------NGKLLAAIN-----------QKIQLYKWMLRDDGTRELQS 546 (774)
Q Consensus 486 ~Grl~v~~i~~~kl~~~~~~~~--~g~v~~i~~~------~~~lv~~~g-----------~~l~v~~~~~~~~~~~~l~~ 546 (774)
.+.|.+++- ..++.++..++ ...+.|++.+ +.+|+++.+ ..|++|++. +++.+++-
T Consensus 806 ~s~i~lidp--~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~---~~kL~lv~ 880 (1158)
T 3ei3_A 806 VHNLLIIDQ--HTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS---DGKLQTVA 880 (1158)
T ss_dssp EEEEEEEET--TTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE---TTEEEEEE
T ss_pred eEEEEEEeC--CCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE---CCEEEEEE
Confidence 345555442 33444554444 4566666643 246777762 368888875 23333433
Q ss_pred hcccccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccCCcEEEEeeCC
Q 004094 547 ECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNS 626 (774)
Q Consensus 547 ~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~ 626 (774)
....++ .+.++...++++++| +-+.+.++.|+.++ .|..-++.+...-++.... ..+.++++|....++.++|++
T Consensus 881 ~~~v~g--~v~al~~~~g~Lla~-ig~~l~vy~l~~~~-~L~~~~~~~~~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 881 EKEVKG--AVYSMVEFNGKLLAS-INSTVRLYEWTTEK-ELRTECNHYNNIMALYLKT-KGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp EEEESS--CEEEEEEETTEEEEE-ETTEEEEEEECTTS-CEEEEEEECCCSCEEEEEE-ETTEEEEEESSBCEEEEEEET
T ss_pred EEEcCC--cCEEEeeeCCEEEEE-cCCEEEEEECCCCc-eEEEEeeccccEEEEEEec-cCCEEEEEEhhheEEEEEEEc
Confidence 333333 456677788888876 45778787776532 3442222221111122222 247899999999999999976
Q ss_pred CCCCccccceeeeEEEEEcCcccceEEeeeeeecCCCCCCCCccEEEEEccccceEEEEec
Q 004094 627 EGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASL 687 (774)
Q Consensus 627 ~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gsi~~i~~l 687 (774)
+. .+|...+.=..+.-+++...- ....++.+-..|.|..+..=
T Consensus 956 ~~------~~L~~~a~D~~~~~vta~~~l------------d~~t~l~aD~~gNl~vl~~~ 998 (1158)
T 3ei3_A 956 ME------GNFEEIARDFNPNWMSAVEIL------------DDDNFLGAENAFNLFVCQKD 998 (1158)
T ss_dssp TT------TEEEEEEECCSCBCEEEEEEE------------ETTEEEEEETTSEEEEEEEC
T ss_pred CC------CeEEEEEeecccccEEEEEEE------------ccCcEEEEcCCCcEEEEecC
Confidence 42 467666654444445443321 12467777788888866543
No 132
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.64 E-value=0.82 Score=47.64 Aligned_cols=244 Identities=9% Similarity=0.001 Sum_probs=120.1
Q ss_pred cEEEEecCCCceeeeEeCCCCCcEEEEEEC--CCEEEEEEcCCeEEEEEEcCc-------eEEEEEeccCCceeEEEEeC
Q 004094 154 SVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDG-------ILTEVKHAQLEYEISCLDIN 224 (774)
Q Consensus 154 ~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~-------~l~~~~~~~l~~~is~l~~~ 224 (774)
.|++.+..+.........+. ..|.+++.. +..++.+..++.+..+.+..+ ....+ ......|+++++.
T Consensus 87 ~v~vWd~~~~~~~~~~~~~~-~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~ 163 (354)
T 2pbi_B 87 KVIVWDSFTTNKEHAVTMPC-TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSV--AMHTNYLSACSFT 163 (354)
T ss_dssp EEEEEETTTCCEEEEEECSS-SCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEE--EECSSCEEEEEEC
T ss_pred eEEEEECCCCCcceEEecCC-CCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceee--eccCCcEEEEEEe
Confidence 45566654433433333322 245555554 335555545666666655321 11111 1245678898886
Q ss_pred CCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccc
Q 004094 225 PIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELT 304 (774)
Q Consensus 225 ~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~ 304 (774)
+ ....++.|.. |+++++|++.+.+.+....-. .....++.+....+..+|+.|..||.+..|.+.. +..
T Consensus 164 ~------~~~~l~t~s~-D~~v~lwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~--~~~- 232 (354)
T 2pbi_B 164 N------SDMQILTASG-DGTCALWDVESGQLLQSFHGH-GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS--GQC- 232 (354)
T ss_dssp S------SSSEEEEEET-TSEEEEEETTTCCEEEEEECC-SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT--CCE-
T ss_pred C------CCCEEEEEeC-CCcEEEEeCCCCeEEEEEcCC-CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC--CcE-
Confidence 4 2456777777 999999999876665432111 0112233333222346789999999999987653 221
Q ss_pred cceeeecCCCCeEEEEEEeCCcceEEEec-CCCeEEEecCCcEEEeeeccc----CceeeecccCCCCCCcEEEE--eCC
Q 004094 305 DRKKVSLGTQPITLRTFSSKNTTHVFAAS-DRPTVIYSSNKKLLYSNVNLK----EVSHMCPFNSAAFPDSLAIA--KEG 377 (774)
Q Consensus 305 ~~~~~~lG~~pv~l~~~~~~~~~~v~~~~-~~p~~l~~~~~~~~~~~~~~~----~i~~~~~f~~~~~~~~l~~~--~~~ 377 (774)
.+.......++.-..+.. +...++..+ +....++.-+..-........ .+.+ ..|+. ...++++ .++
T Consensus 233 -~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~-~~~s~---~g~~l~~g~~d~ 306 (354)
T 2pbi_B 233 -VQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS-VDFSL---SGRLLFAGYNDY 306 (354)
T ss_dssp -EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE-EEECT---TSSEEEEEETTS
T ss_pred -EEEecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeE-EEEeC---CCCEEEEEECCC
Confidence 111111123333222321 223333333 333334433221111111111 1111 12321 1223333 367
Q ss_pred eEEEEEEcCCCCeEEEEEe-CCCcccEEEEecCCCEEEEEEec
Q 004094 378 ELTIGTIDDIQKLHIRSIP-LGEHPRRICHQEQSRTFAICSLK 419 (774)
Q Consensus 378 ~l~i~~l~~~~~~~~~~i~-l~~tp~~i~y~~~~~~~~v~~~~ 419 (774)
.+++..+.+...+ ..+. -...+..++++|+.+.++.++.+
T Consensus 307 ~i~vwd~~~~~~~--~~l~~h~~~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 307 TINVWDVLKGSRV--SILFGHENRVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp CEEEEETTTCSEE--EEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred cEEEEECCCCceE--EEEECCCCcEEEEEECCCCCEEEEEcCC
Confidence 8998887654322 2332 23457789999998877766644
No 133
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=96.58 E-value=0.87 Score=47.09 Aligned_cols=235 Identities=9% Similarity=0.057 Sum_probs=119.7
Q ss_pred CcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECC
Q 004094 175 YSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP 252 (774)
Q Consensus 175 ~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~ 252 (774)
..|.+.+.+ +..++.+..++.+..+.+..++.... -......|.|+++.+- ...++.|.. |+.|++|++.
T Consensus 77 ~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~-~~~h~~~v~~v~~sp~------~~~l~s~~~-d~~i~~wd~~ 148 (343)
T 2xzm_R 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKR-FVGHQSEVYSVAFSPD------NRQILSAGA-EREIKLWNIL 148 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEE-EECCCSCEEEEEECSS------TTEEEEEET-TSCEEEEESS
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEE-EcCCCCcEEEEEECCC------CCEEEEEcC-CCEEEEEecc
Confidence 357777665 34666666678888888766543221 1235678999999752 467777777 9999999986
Q ss_pred CCCeeEEecCCC-ccCceeEEeeeec--------CeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEe
Q 004094 253 DLNLITKEHLGG-EIIPRSVLLCAFE--------GISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSS 323 (774)
Q Consensus 253 ~~~~~~~~~l~~-~~~p~si~~~~~~--------~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~ 323 (774)
............ .....++.+.+.+ ...+|+.|..||.+..|.. ++.. .....--..++.-..+..
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~---~~~~--~~~~~~h~~~v~~~~~s~ 223 (343)
T 2xzm_R 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT---NFQI--RYTFKAHESNVNHLSISP 223 (343)
T ss_dssp SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET---TTEE--EEEEECCSSCEEEEEECT
T ss_pred CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC---CCce--eEEEcCccccceEEEECC
Confidence 322211111100 0112233322211 1257889999999999872 1211 111111123333223321
Q ss_pred CCcceEEEecC-CCeEEEec-CCc--EEEeeecccCceeeecccCCCCCCcEEEEeCCeEEEEEEcCCCCeEEEEEeC--
Q 004094 324 KNTTHVFAASD-RPTVIYSS-NKK--LLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPL-- 397 (774)
Q Consensus 324 ~~~~~v~~~~~-~p~~l~~~-~~~--~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l-- 397 (774)
+...+...+. ....++.. ... ....+ ....+.++ .|+.. ...+....++.+++..+.+........+..
T Consensus 224 -~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v-~~sp~--~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~ 298 (343)
T 2xzm_R 224 -NGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQI-AFNPK--LQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEP 298 (343)
T ss_dssp -TSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEE-EECSS--SCEEEEEESSCEEEEESSSCCSCSEEECCCCS
T ss_pred -CCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEE-EECCC--CCEEEEECCCCEEEEEeCCCCCCceEEeecCc
Confidence 2223333332 33333332 111 11111 11223332 23321 123444567889999887655443333321
Q ss_pred ----------CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEEC
Q 004094 398 ----------GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDD 437 (774)
Q Consensus 398 ----------~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~ 437 (774)
...+..++++|..+.++.++.+ ..|++++.
T Consensus 299 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~D----------g~v~~w~~ 338 (343)
T 2xzm_R 299 ITKAEGQKGKNPQCTSLAWNALGKKLFAGFTD----------GVIRTFSF 338 (343)
T ss_dssp GGGBTTBCCSCCCEEEEEECSSSCCEEEEETT----------SEEEEEEE
T ss_pred chhhhhhcCCCCceEEEEECCCCCeEEEecCC----------ceEEEEEE
Confidence 1235678999998887777654 26777664
No 134
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=96.57 E-value=0.53 Score=48.61 Aligned_cols=263 Identities=9% Similarity=0.017 Sum_probs=133.2
Q ss_pred CcEEEEecCCCceeeeEe-----CCCCCcEEEEEECCCEEEEEEc-CCeEEEEEEcCceEEEEEeccCCceeEEEEeCCC
Q 004094 153 GSVRLVSSTSRELRNEWK-----SPPGYSVNVATANASQVLLATG-GGHLVYLEIGDGILTEVKHAQLEYEISCLDINPI 226 (774)
Q Consensus 153 ~~i~l~~~~~~~~~~~~~-----~~~~~~I~~a~~~~~~lvv~~~-~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~ 226 (774)
.+|..++.++++....+. .+.|......+.++..+.++.. ++.+..+....+++.. ..+....+..+++.+
T Consensus 17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~--~i~~~~~p~~i~~~~- 93 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVG--RITGFTSPRYIHFLS- 93 (328)
T ss_dssp BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEE--EEECCSSEEEEEEEE-
T ss_pred ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEE--EcCCCCCCcEEEEeC-
Confidence 456667766544333221 1233334444556666666654 4667666655444322 122335577777743
Q ss_pred CCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCc----cCceeEEeeeecCeeEEEEEe--CCCcEEEEEEecCC
Q 004094 227 GENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGE----IIPRSVLLCAFEGISYLLCAL--GDGHLLNFLLNMKT 300 (774)
Q Consensus 227 ~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~----~~p~si~~~~~~~~~~L~vgl--~~G~l~~y~~~~~~ 300 (774)
...+.|+...++.|.+|++.+.++.....++.. ..|+.+++ . ...|+++. .++.+.++. ..+
T Consensus 94 ------~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~---~~~lyv~~~~~~~~v~viD--~~t 161 (328)
T 3dsm_A 94 ------DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y---GKYVYVNCWSYQNRILKID--TET 161 (328)
T ss_dssp ------TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E---TTEEEEEECTTCCEEEEEE--TTT
T ss_pred ------CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E---CCEEEEEcCCCCCEEEEEE--CCC
Confidence 235777773389999999988776544444321 15777766 1 24566665 367666654 444
Q ss_pred CccccceeeecCCCCeEEEEEEeCCcceEEEecCCC-----------eE-EEecC-CcEE-Eeeecc-cCceeeecccCC
Q 004094 301 GELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRP-----------TV-IYSSN-KKLL-YSNVNL-KEVSHMCPFNSA 365 (774)
Q Consensus 301 ~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p-----------~~-l~~~~-~~~~-~~~~~~-~~i~~~~~f~~~ 365 (774)
+.+ .+....|..|..+. +. ....+++.+... .+ .+..+ +++. ...+.. .....++ |
T Consensus 162 ~~~--~~~i~~g~~p~~i~-~~--~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la-~--- 232 (328)
T 3dsm_A 162 DKV--VDELTIGIQPTSLV-MD--KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQ-L--- 232 (328)
T ss_dssp TEE--EEEEECSSCBCCCE-EC--TTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEE-E---
T ss_pred CeE--EEEEEcCCCccceE-Ec--CCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEE-E---
Confidence 432 23455677775443 22 223455554322 22 22222 3332 112211 1122222 1
Q ss_pred CCC-CcEEEEeCCeEEEEEEcCCC-CeE-EEEEeC-CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCce
Q 004094 366 AFP-DSLAIAKEGELTIGTIDDIQ-KLH-IRSIPL-GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFE 441 (774)
Q Consensus 366 ~~~-~~l~~~~~~~l~i~~l~~~~-~~~-~~~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~ 441 (774)
.| +..+|+.+. .+..++... ++. ...++. +..|..++++|..+.+.|+.... -.....|.++|+. .+
T Consensus 233 -~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~-----y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 233 -NGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAID-----YQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp -CTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTT-----SSSEEEEEEECTT-CC
T ss_pred -ecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccc-----cccCCEEEEECCC-CC
Confidence 12 345555555 444554432 221 112233 46899999998555555554110 0123589999997 77
Q ss_pred EEEEEEC
Q 004094 442 FISTYPL 448 (774)
Q Consensus 442 ~i~~~~~ 448 (774)
.+.+++.
T Consensus 304 ~~~~i~~ 310 (328)
T 3dsm_A 304 LIDEFYV 310 (328)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 7776653
No 135
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.57 E-value=0.87 Score=46.98 Aligned_cols=225 Identities=13% Similarity=0.155 Sum_probs=120.5
Q ss_pred CeEEEEEEcCceEEEEEe-ccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECC-C--CCeeEEecCCCc----
Q 004094 194 GHLVYLEIGDGILTEVKH-AQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLP-D--LNLITKEHLGGE---- 265 (774)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~-~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~-~--~~~~~~~~l~~~---- 265 (774)
+.+..+.++.+++..+.. ......+.++++++ ...+++++.+.++.+.+|++. + ++.+........
T Consensus 63 ~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp------dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~ 136 (347)
T 3hfq_A 63 GGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE------ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRP 136 (347)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESCCCSEEEEET------TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSST
T ss_pred ceEEEEEecCCcEEEeeeeecCCCCCEEEEECC------CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCc
Confidence 567777776666555433 22345677888865 246788888668999999985 2 333322222110
Q ss_pred ----cCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCcccccee--eecCCCCeEEEEEEeCCcceEEEecCC--Ce
Q 004094 266 ----IIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKK--VSLGTQPITLRTFSSKNTTHVFAASDR--PT 337 (774)
Q Consensus 266 ----~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~--~~lG~~pv~l~~~~~~~~~~v~~~~~~--p~ 337 (774)
..|+++++.+- ++ .++.+..++.+..|.++. ++.+..... ...|..|..+ .+.- +...+++++.. ..
T Consensus 137 ~~~~~~~~~~~~spd-g~-l~v~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~g~~p~~~-~~sp-dg~~l~v~~~~~~~v 211 (347)
T 3hfq_A 137 EQDGSHIHYTDLTPD-NR-LAVIDLGSDKVYVYNVSD-AGQLSEQSVLTMEAGFGPRHL-VFSP-DGQYAFLAGELSSQI 211 (347)
T ss_dssp TCSSCCEEEEEECTT-SC-EEEEETTTTEEEEEEECT-TSCEEEEEEEECCTTCCEEEE-EECT-TSSEEEEEETTTTEE
T ss_pred cccCCCceEEEECCC-Cc-EEEEeCCCCEEEEEEECC-CCcEEEeeeEEcCCCCCCceE-EECC-CCCEEEEEeCCCCEE
Confidence 12455555432 33 455667788899999873 354433222 2234455433 2322 33446665432 22
Q ss_pred EEEe-c--CCcEEEe-eecccC--------ceeeecccCCCCCCc-EE-EEe--CCeEEEEEEcCCCC-eEEEEEeC-CC
Q 004094 338 VIYS-S--NKKLLYS-NVNLKE--------VSHMCPFNSAAFPDS-LA-IAK--EGELTIGTIDDIQK-LHIRSIPL-GE 399 (774)
Q Consensus 338 ~l~~-~--~~~~~~~-~~~~~~--------i~~~~~f~~~~~~~~-l~-~~~--~~~l~i~~l~~~~~-~~~~~i~l-~~ 399 (774)
.++. + .+++... .+...+ +.. ..| .|++ .+ ++. ++.+.+..++.... -.+..++. +.
T Consensus 212 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-i~~----spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~ 286 (347)
T 3hfq_A 212 ASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAA-IRL----SHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD 286 (347)
T ss_dssp EEEEEETTTTEEEEEEEEESSCTTCCSCCEEEE-EEE----CTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSS
T ss_pred EEEEecCCCCceEEeeeeeecCCCCCCCCccee-EEE----CCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC
Confidence 2332 2 2333211 111000 111 112 1333 33 332 57899999874322 35566777 56
Q ss_pred cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEE--ECCCceEE
Q 004094 400 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLL--DDQTFEFI 443 (774)
Q Consensus 400 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~--d~~~~~~i 443 (774)
.|+.++++|+.+.++++.... ..+.++ |+.+.+..
T Consensus 287 ~~~~~~~spdg~~l~v~~~~~---------~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 287 FPRDFDLDPTEAFVVVVNQNT---------DNATLYARDLTSGKLS 323 (347)
T ss_dssp CCCEEEECTTSSEEEEEETTT---------TEEEEEEECTTTCCEE
T ss_pred CcCeEEECCCCCEEEEEEcCC---------CcEEEEEEeCCCCeEE
Confidence 799999999998777766442 256666 77766654
No 136
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=96.47 E-value=1.1 Score=47.15 Aligned_cols=270 Identities=11% Similarity=0.073 Sum_probs=137.2
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEe---------cCCEEEEEECCCCCeeEEecCCC------ccCceeEEeeeec
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMW---------TDISVRIFSLPDLNLITKEHLGG------EIIPRSVLLCAFE 277 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~---------~~~~i~i~~l~~~~~~~~~~l~~------~~~p~si~~~~~~ 277 (774)
+....+. +++++ + ..+++|+.+ .++.+.+|+..+++.+..-.++. ..-|+.+.+.+
T Consensus 76 ~vG~~P~-va~sp--D----G~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-- 146 (386)
T 3sjl_D 76 DGGFLPN-PVVAD--D----GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-- 146 (386)
T ss_dssp EECSSCE-EEECT--T----SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT--
T ss_pred ECCCCCc-EEECC--C----CCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC--
Confidence 3333343 77765 2 456667653 25789999999988876554442 12577776654
Q ss_pred CeeEEEEEeC--CCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCeEEEecC--CcEEEeeecc
Q 004094 278 GISYLLCALG--DGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSN--KKLLYSNVNL 353 (774)
Q Consensus 278 ~~~~L~vgl~--~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~~--~~~~~~~~~~ 353 (774)
+..+|++.-. ++.+.+ +|..++++ .+.+.++.. ..+.|- +....+.++.+..++..... +++.......
T Consensus 147 DGk~lyVan~~~~~~VsV--ID~~t~~v--v~tI~v~g~-~~~~P~--g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~ 219 (386)
T 3sjl_D 147 DGKTLLFYQFSPAPAVGV--VDLEGKAF--KRMLDVPDC-YHIFPT--APDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 219 (386)
T ss_dssp TSSEEEEEECSSSCEEEE--EETTTTEE--EEEEECCSE-EEEEEE--ETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred CCCEEEEEEcCCCCeEEE--EECCCCcE--EEEEECCCc-ceeecC--CCceeEEECCCCCEEEEECCCCCeEEEeecce
Confidence 3456777653 465655 44443332 223333221 112221 11222333444443333221 3331100000
Q ss_pred cCceeeecccCCCC--CCc-EEEEe-CCeEEEEEEcCCCCeEEEEEeC--------CCcc---cEEEEecCCCEEEEEEe
Q 004094 354 KEVSHMCPFNSAAF--PDS-LAIAK-EGELTIGTIDDIQKLHIRSIPL--------GEHP---RRICHQEQSRTFAICSL 418 (774)
Q Consensus 354 ~~i~~~~~f~~~~~--~~~-l~~~~-~~~l~i~~l~~~~~~~~~~i~l--------~~tp---~~i~y~~~~~~~~v~~~ 418 (774)
.....-..|.+..+ +++ ++|++ ++.+.+..+.....-..+++.+ +-.| .-+++++..+.+.|+..
T Consensus 220 ~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~ 299 (386)
T 3sjl_D 220 FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 299 (386)
T ss_dssp CSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred eccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEec
Confidence 00000001111111 233 56655 5666666665433233444442 1112 23778888888887764
Q ss_pred ccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCe
Q 004094 419 KNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGK 498 (774)
Q Consensus 419 ~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~k 498 (774)
.............|-++|.++++.+.++.+.. .+.++ .+..++++.+++... ..|.+.+++...+
T Consensus 300 ~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~l---avs~D~~~~ly~tn~---------~~~~VsViD~~t~- 364 (386)
T 3sjl_D 300 QRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSI---NVSQDEKPLLYALST---------GDKTLYIHDAESG- 364 (386)
T ss_dssp ECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEE---EECSSSSCEEEEEET---------TTTEEEEEETTTC-
T ss_pred cccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceE---EECCCCCeEEEEEcC---------CCCeEEEEECCCC-
Confidence 32100011124689999999999999988753 34443 466666666665542 3578999987544
Q ss_pred EEEEEEEeecCceeEe
Q 004094 499 LQLIAEKETKGAVYSL 514 (774)
Q Consensus 499 l~~~~~~~~~g~v~~i 514 (774)
+++...+..+.+..+
T Consensus 365 -k~~~~i~~~~~p~~l 379 (386)
T 3sjl_D 365 -EELRSVNQLGHGPQV 379 (386)
T ss_dssp -CEEEEECCCCSSCCE
T ss_pred -cEEEEecCCCCCcee
Confidence 455555666655444
No 137
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=96.40 E-value=0.83 Score=45.84 Aligned_cols=223 Identities=13% Similarity=0.068 Sum_probs=115.1
Q ss_pred CCcEEEEe--CCeEEEEEEcCCCCeEEEEEeCCC--cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEE
Q 004094 368 PDSLAIAK--EGELTIGTIDDIQKLHIRSIPLGE--HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFI 443 (774)
Q Consensus 368 ~~~l~~~~--~~~l~i~~l~~~~~~~~~~i~l~~--tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i 443 (774)
|+.++++. ++.+.+ ++....=...+++.+. .++.+.+.|+.+.++ +.. ..+..+|+ +.+.+
T Consensus 4 ~~~~lv~~~~~~~v~~--~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~----------~~V~~~d~-~G~~~ 68 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAI--INKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYS----------KGAKMITR-DGREL 68 (276)
T ss_dssp CCEEEEECTTCSEEEE--EETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECB----------SEEEEECT-TSCEE
T ss_pred CCcEEEeeCCCCEEEE--EECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCC----------CCEEEECC-CCCEE
Confidence 45566664 344444 4443333456666654 688899999988766 322 26999999 78999
Q ss_pred EEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEe--ecC---ceeEeccc-
Q 004094 444 STYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE--TKG---AVYSLNAF- 517 (774)
Q Consensus 444 ~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~--~~g---~v~~i~~~- 517 (774)
-++.......+.++. +..+ ..++++... ..++++.++. ++++.-..... ..+ ++..+...
T Consensus 69 W~~~~~~~~~~~~~~---~~~d-G~~lv~~~~---------~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~ 134 (276)
T 3no2_A 69 WNIAAPAGCEMQTAR---ILPD-GNALVAWCG---------HPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK 134 (276)
T ss_dssp EEEECCTTCEEEEEE---ECTT-SCEEEEEES---------TTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT
T ss_pred EEEcCCCCccccccE---ECCC-CCEEEEecC---------CCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC
Confidence 888875443444433 3333 344554442 1478877764 44432222111 111 22223222
Q ss_pred cCeEEEEE--CCEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeE-EEEec-c
Q 004094 518 NGKLLAAI--NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI-EERAR-D 593 (774)
Q Consensus 518 ~~~lv~~~--g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l-~~~a~-D 593 (774)
+|.++++. +.+|+.|+ . +|+..+ .......++.+.....|+. ++++...+ .++.|+++.+++ -.+.+ +
T Consensus 135 ~G~~lv~~~~~~~v~~~d--~--~G~~~w--~~~~~~~~~~~~~~~~g~~-~v~~~~~~-~v~~~d~~tG~~~w~~~~~~ 206 (276)
T 3no2_A 135 KGNYLVPLFATSEVREIA--P--NGQLLN--SVKLSGTPFSSAFLDNGDC-LVACGDAH-CFVQLNLESNRIVRRVNAND 206 (276)
T ss_dssp TSCEEEEETTTTEEEEEC--T--TSCEEE--EEECSSCCCEEEECTTSCE-EEECBTTS-EEEEECTTTCCEEEEEEGGG
T ss_pred CCCEEEEecCCCEEEEEC--C--CCCEEE--EEECCCCccceeEcCCCCE-EEEeCCCC-eEEEEeCcCCcEEEEecCCC
Confidence 55555554 35666544 2 243222 1111112222222233454 45555444 356788874444 44433 2
Q ss_pred C---CcceeEEEEEeeCCeEEEEccCC---------cEEEEeeCCC
Q 004094 594 Y---NANWMSAVEILDDDIYLGAENNF---------NLFTVRKNSE 627 (774)
Q Consensus 594 ~---~~~~v~~~~~l~~~~~l~~D~~g---------nl~~l~~~~~ 627 (774)
. ...+++++..+.++.+++++..| +..+++++++
T Consensus 207 ~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~ 252 (276)
T 3no2_A 207 IEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSE 252 (276)
T ss_dssp SBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTT
T ss_pred CCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCC
Confidence 1 12456777777777777777544 3356676553
No 138
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=96.38 E-value=0.15 Score=55.16 Aligned_cols=206 Identities=10% Similarity=0.050 Sum_probs=116.7
Q ss_pred EEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCC----------ceEEEEEECCCCceEEEEEEEE
Q 004094 392 IRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQT----------FEFISTYPLDTFEYGCSILSCS 461 (774)
Q Consensus 392 ~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~----------~~~i~~~~~~~~E~~~si~~~~ 461 (774)
.+.++-...+.+++++|....+++.+... +.|+++|..+ .+.+..+.-. ...+.++.
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~d---------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~--- 188 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPS---------SDVLVFDYTKHPSKPEPSGECQPDLRLRGH-QKEGYGLS--- 188 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSS---------SCEEEEEGGGSCSSCCTTCCCCCSEEEECC-SSCCCCEE---
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCC---------CcEEEEECCCcccccCccccCCCcEEecCC-CCCeEEEE---
Confidence 45566677899999999744444443321 3588887654 3444444432 23345543
Q ss_pred EcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC-----eEEEEEE-EeecCceeEeccc--cCeEEEEE--CCEEEE
Q 004094 462 FSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG-----KLQLIAE-KETKGAVYSLNAF--NGKLLAAI--NQKIQL 531 (774)
Q Consensus 462 ~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~-----kl~~~~~-~~~~g~v~~i~~~--~~~lv~~~--g~~l~v 531 (774)
+..++..+++.|. ..|.|.+|++..+ .+..... ....++|.+++-. ++.++++. ...|++
T Consensus 189 ~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i 258 (430)
T 2xyi_A 189 WNPNLNGYLLSAS----------DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMI 258 (430)
T ss_dssp ECTTSTTEEEEEC----------TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred eCCCCCCeEEEEe----------CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEE
Confidence 3333444777775 3489999998742 1222222 2457789988865 34555443 478899
Q ss_pred EEeeecCCCchhhh-hhcccccceEEEEEEEe--CC-EEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeC
Q 004094 532 YKWMLRDDGTRELQ-SECGHHGHILALYVQTR--GD-FIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDD 607 (774)
Q Consensus 532 ~~~~~~~~~~~~l~-~~~~~~~~~~~~~l~~~--~~-~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~ 607 (774)
|++.. ....+.. ....+.. .+.++... +. ++++|..-..|.++.++.....+..+. .+...++++.+-.+
T Consensus 259 ~d~~~--~~~~~~~~~~~~~~~--~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~--~h~~~v~~i~~sp~ 332 (430)
T 2xyi_A 259 WDTRN--NNTSKPSHTVDAHTA--EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE--SHKDEIFQVQWSPH 332 (430)
T ss_dssp EETTC--SCSSSCSEEEECCSS--CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE--CCSSCEEEEEECSS
T ss_pred EECCC--CCCCcceeEeecCCC--CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee--cCCCCEEEEEECCC
Confidence 87632 1101111 1111112 23445543 44 677888888887755443222233332 23556777877655
Q ss_pred C-e-EEEEccCCcEEEEeeCC
Q 004094 608 D-I-YLGAENNFNLFTVRKNS 626 (774)
Q Consensus 608 ~-~-~l~~D~~gnl~~l~~~~ 626 (774)
+ . ++++..+|.+.++....
T Consensus 333 ~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 333 NETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp CTTEEEEEETTSCCEEEEGGG
T ss_pred CCCEEEEEeCCCcEEEEeCCC
Confidence 4 3 56777899999999865
No 139
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=96.12 E-value=0.3 Score=50.12 Aligned_cols=245 Identities=13% Similarity=0.097 Sum_probs=128.0
Q ss_pred CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCC-CceEEEEEEEEEcCC-CceEEEEEeee
Q 004094 399 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDT-FEYGCSILSCSFSDD-SNVYYCVGTAY 476 (774)
Q Consensus 399 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~-~E~~~si~~~~~~~~-~~~~i~VGT~~ 476 (774)
..++.++++++.+.++.++.+. .+++.|..+.+......|.. ...+.+++ +..+ ...+++.|.
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~----------~v~lwd~~~~~~~~~~~l~gH~~~V~~v~---~~~~~~~~~l~s~s-- 78 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDR----------SVKIFDVRNGGQILIADLRGHEGPVWQVA---WAHPMYGNILASCS-- 78 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTT----------EEEEEEEETTEEEEEEEEECCSSCEEEEE---ECCGGGSSCEEEEE--
T ss_pred CeEEEeeEcCCCCEEEEEeCCC----------eEEEEEecCCCcEEEEEEcCCCccEEEEE---eCCCCCCCEEEEEE--
Confidence 3466788998888777666543 78998876554322223332 23455553 3321 235677665
Q ss_pred eCCCCCCCcceEEEEEEEeCCeEEEEEE-EeecCceeEecccc---CeEEEEE--CCEEEEEEeeecCCCchhhhh-hcc
Q 004094 477 VLPEENEPTKGRILVFIVEDGKLQLIAE-KETKGAVYSLNAFN---GKLLAAI--NQKIQLYKWMLRDDGTRELQS-ECG 549 (774)
Q Consensus 477 ~~~~e~~~~~Grl~v~~i~~~kl~~~~~-~~~~g~v~~i~~~~---~~lv~~~--g~~l~v~~~~~~~~~~~~l~~-~~~ 549 (774)
..|.+.+|++..++.+.+.. ..+.++|++++-.. +.++++. .+.|++|++.. .+..++.. ...
T Consensus 79 --------~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~--~~~~~~~~~~~~ 148 (316)
T 3bg1_A 79 --------YDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG--EGQWEVKKINNA 148 (316)
T ss_dssp --------TTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS--SSCEEECCBTTS
T ss_pred --------CCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC--CCCcceeeeecc
Confidence 23789999987654433333 24678899988542 4444433 46889887642 11111110 011
Q ss_pred cccceEEEEEEE-----------------eCCEEEEEeccccEEEEEEEccCCeEEEE-eccCCcceeEEEEEeeC----
Q 004094 550 HHGHILALYVQT-----------------RGDFIVVGDLMKSISLLIYKHEEGAIEER-ARDYNANWMSAVEILDD---- 607 (774)
Q Consensus 550 ~~~~~~~~~l~~-----------------~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~-a~D~~~~~v~~~~~l~~---- 607 (774)
+......+.... .+.+++.|..-..|.++.... ......+ .-..+..+|.++.+-.+
T Consensus 149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~-~~~~~~~~~l~~h~~~V~~v~~sp~~~~~ 227 (316)
T 3bg1_A 149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE-DGQWKEEQKLEAHSDWVRDVAWAPSIGLP 227 (316)
T ss_dssp SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECT-TSCEEEEECCBCCSSCEEEEECCCCSSCS
T ss_pred ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCC-CCccceeeecccCCCceEEEEecCCCCCC
Confidence 111111111100 135777787777787765532 2222222 11234567888776543
Q ss_pred -CeEEEEccCCcEEEEeeCCCCCCccccceeeeEEEEEcCcccceEEeeeeeecCCCCCCCCccEEEEEccccceEEEE
Q 004094 608 -DIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIA 685 (774)
Q Consensus 608 -~~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gsi~~i~ 685 (774)
..++.+..+|.+.++..............+ . .....|.++. +. .....++.++.||.|....
T Consensus 228 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~---~--~~~~~v~~v~---~s--------p~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 228 TSTIASCSQDGRVFIWTCDDASSNTWSPKLL---H--KFNDVVWHVS---WS--------ITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp CCEEEEEETTCEEEEEECSSTTCCCCBCCEE---E--ECSSCEEEEE---EC--------TTTCCEEEEESSSCEEEEE
T ss_pred CceEEEEcCCCeEEEEEccCccccchhhhhh---h--cCCCcEEEEE---Ec--------CCCCEEEEEcCCCeEEEEE
Confidence 346678889999999875421110000111 1 1234454433 21 1235677778888887664
No 140
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=96.06 E-value=1.4 Score=45.98 Aligned_cols=231 Identities=15% Similarity=0.112 Sum_probs=117.3
Q ss_pred EeCCCcccEEEEecCCCE-EEEEEeccCCCCCce----eeeEEEEEECC-CceEE---EEEECCCCceEEEEEEEEEcCC
Q 004094 395 IPLGEHPRRICHQEQSRT-FAICSLKNQSCAEES----EMHFVRLLDDQ-TFEFI---STYPLDTFEYGCSILSCSFSDD 465 (774)
Q Consensus 395 i~l~~tp~~i~y~~~~~~-~~v~~~~~~~~~~~~----~~~~l~l~d~~-~~~~i---~~~~~~~~E~~~si~~~~~~~~ 465 (774)
.+.+..|..++++|+.+. +++.+.......... ....+.+++.. +.+.. ..+.......+.++. +..+
T Consensus 79 ~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~spd 155 (365)
T 1jof_A 79 HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMV---FDPT 155 (365)
T ss_dssp EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEE---ECTT
T ss_pred eecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEE---ECCC
Confidence 334445888889988875 333332000000000 12356676653 34433 222233444555543 4544
Q ss_pred CceEEEEEeeeeCCCCCCCcceEEEEEEEe-CCeEEEEEEEee---cCceeEeccc-cC-eEEEEE--CCEEEEEEeeec
Q 004094 466 SNVYYCVGTAYVLPEENEPTKGRILVFIVE-DGKLQLIAEKET---KGAVYSLNAF-NG-KLLAAI--NQKIQLYKWMLR 537 (774)
Q Consensus 466 ~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~-~~kl~~~~~~~~---~g~v~~i~~~-~~-~lv~~~--g~~l~v~~~~~~ 537 (774)
++ +++++.. ..++|++|++. .++++.+..... ...+..++-- +| +|+++. ++.+.+|.++..
T Consensus 156 G~-~l~~~~~---------~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~ 225 (365)
T 1jof_A 156 ET-YLYSADL---------TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp SS-EEEEEET---------TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CC-EEEEEcC---------CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC
Confidence 44 4555421 13689999998 678876655442 2346666533 45 455554 468999887531
Q ss_pred CCCchhh--hhhccc----ccce-------EEEEEE---EeCCEEEEEeccc------cEEEEEEEccCCeEEE----Ee
Q 004094 538 DDGTREL--QSECGH----HGHI-------LALYVQ---TRGDFIVVGDLMK------SISLLIYKHEEGAIEE----RA 591 (774)
Q Consensus 538 ~~~~~~l--~~~~~~----~~~~-------~~~~l~---~~~~~I~vgD~~~------Sv~~~~~~~~~~~l~~----~a 591 (774)
.++... ...... .... .+..+. -.|.++++++... ++.++..+. .+++.. +.
T Consensus 226 -~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~-~g~~~~~~~~~~ 303 (365)
T 1jof_A 226 -THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD-CGSIEKQLFLSP 303 (365)
T ss_dssp -TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT-TSCEEEEEEEEE
T ss_pred -CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC-CCCEEEeeeeee
Confidence 232111 001111 1111 233344 4567899988654 688776653 345543 21
Q ss_pred -ccCCcceeEEEEEe--eCCeEEEEcc-CCcEEEEeeCCCCCCccccceeeeEEEEEcCccc
Q 004094 592 -RDYNANWMSAVEIL--DDDIYLGAEN-NFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFV 649 (774)
Q Consensus 592 -~D~~~~~v~~~~~l--~~~~~l~~D~-~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v 649 (774)
....++++. ...- +.+.+++++. ++.+.+++.+.+ .|...+.+.+++.+
T Consensus 304 ~~~~~~~~~a-~sp~~~dg~~l~v~~~~~~~v~v~~~~~~--------~l~~~~~~~~~~p~ 356 (365)
T 1jof_A 304 TPTSGGHSNA-VSPCPWSDEWMAITDDQEGWLEIYRWKDE--------FLHRVARVRIPEPG 356 (365)
T ss_dssp CSSCCTTCCC-EEECTTCTTEEEEECSSSCEEEEEEEETT--------EEEEEEEEECCSTT
T ss_pred cCCCCcccce-ecCCCcCCCEEEEEEcCCCeEEEEEEchh--------hCceeeEEEcCCCc
Confidence 122344321 1111 2345566665 488999988652 45555677777654
No 141
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=95.99 E-value=1.7 Score=44.46 Aligned_cols=143 Identities=16% Similarity=0.100 Sum_probs=84.0
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCC--cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCC--
Q 004094 376 EGELTIGTIDDIQKLHIRSIPLGE--HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF-- 451 (774)
Q Consensus 376 ~~~l~i~~l~~~~~~~~~~i~l~~--tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~-- 451 (774)
++.+.+..+.+ .-..+.++++. .|..++++|+.+.++++.... ..|.++|..+.+.+..+.+...
T Consensus 20 ~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~---------~~i~~~d~~t~~~~~~~~~~~~~~ 88 (349)
T 1jmx_B 20 PNNLHVVDVAS--DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY---------GDIYGIDLDTCKNTFHANLSSVPG 88 (349)
T ss_dssp TTEEEEEETTT--TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT---------TEEEEEETTTTEEEEEEESCCSTT
T ss_pred CCeEEEEECCC--CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCC---------CcEEEEeCCCCcEEEEEEcccccc
Confidence 56677665543 34567788887 799999999988666665321 3799999999988887776532
Q ss_pred ---ceEEEEEEEEEcCCCceEEEEEeee--eCCCCCCCcceEEEEEEEeCCe-EEEEEEEeecCceeEeccc-cCeEEEE
Q 004094 452 ---EYGCSILSCSFSDDSNVYYCVGTAY--VLPEENEPTKGRILVFIVEDGK-LQLIAEKETKGAVYSLNAF-NGKLLAA 524 (774)
Q Consensus 452 ---E~~~si~~~~~~~~~~~~i~VGT~~--~~~~e~~~~~Grl~v~~i~~~k-l~~~~~~~~~g~v~~i~~~-~~~lv~~ 524 (774)
..+.++ .+..++ ++++++... ....+.....+.|++|++..++ .+.+.....+..+.+++-- +|++++
T Consensus 89 ~~~~~~~~~---~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~- 163 (349)
T 1jmx_B 89 EVGRSMYSF---AISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV- 163 (349)
T ss_dssp EEEECSSCE---EECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE-
T ss_pred cccccccce---EECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEE-
Confidence 222332 344444 455555532 1101111124789999887532 2222333344456666533 566555
Q ss_pred ECCEEEEEEe
Q 004094 525 INQKIQLYKW 534 (774)
Q Consensus 525 ~g~~l~v~~~ 534 (774)
.+..|++++.
T Consensus 164 ~~~~i~~~d~ 173 (349)
T 1jmx_B 164 AGPDIYKMDV 173 (349)
T ss_dssp ESSSEEEECT
T ss_pred ccCcEEEEeC
Confidence 5666776553
No 142
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.77 E-value=2.1 Score=43.99 Aligned_cols=137 Identities=13% Similarity=0.125 Sum_probs=85.4
Q ss_pred cCcEEEEecCCCceeeeEeCCCCCcEEEEEECC----CEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCC
Q 004094 152 SGSVRLVSSTSRELRNEWKSPPGYSVNVATANA----SQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIG 227 (774)
Q Consensus 152 ~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~~----~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~ 227 (774)
...+.+++....+.+.....+....|.+.+.++ ..++.+..++.+..+.+..++............++|+++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-- 180 (343)
T 3lrv_A 103 GNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-- 180 (343)
T ss_dssp TTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT--
T ss_pred cCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC--
Confidence 445555665554445555544444687777654 46666666788888888776554443344556799999965
Q ss_pred CCCCCcceEEEEEecCCEEEEEECCCCCee-EEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEec
Q 004094 228 ENPSYSQIAAVGMWTDISVRIFSLPDLNLI-TKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 228 ~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~-~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 298 (774)
...+++.|.. +|.|+||++.+.+.+ ............++.+.+ +..+|+.|. +|.+..|.+..
T Consensus 181 ----dg~~lasg~~-dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~--~g~~l~s~~-~~~v~iwd~~~ 244 (343)
T 3lrv_A 181 ----DSLLLALYSP-DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD--NGYWMVVEC-DQTVVCFDLRK 244 (343)
T ss_dssp ----TSCEEEEECT-TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT--TSSEEEEEE-SSBEEEEETTS
T ss_pred ----CCCEEEEEcC-CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC--CCCEEEEEe-CCeEEEEEcCC
Confidence 2567888877 999999999876654 322221112334554432 346677777 66888887654
No 143
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=95.76 E-value=2.1 Score=43.90 Aligned_cols=235 Identities=8% Similarity=0.045 Sum_probs=120.7
Q ss_pred CeEEEEec--CcEEEEecCCCceeeeEeCCCCCcEEEEEE-CCCEEEEEE-cCCeEEEEEEcCceEEEEEeccCCc----
Q 004094 145 NQLVQVTS--GSVRLVSSTSRELRNEWKSPPGYSVNVATA-NASQVLLAT-GGGHLVYLEIGDGILTEVKHAQLEY---- 216 (774)
Q Consensus 145 ~~~vQVT~--~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~-~~~~lvv~~-~~~~~~~~~~~~~~l~~~~~~~l~~---- 216 (774)
+.+..++. +.|.+++.++.+.+..+. .+......++ .+..+.++. .++.+..+....+++... .+...
T Consensus 54 ~~lyv~~~~~~~v~viD~~t~~~~~~i~--~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~--i~~g~~~~~ 129 (328)
T 3dsm_A 54 GIGWIVVNNSHVIFAIDINTFKEVGRIT--GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY--IECPDMDME 129 (328)
T ss_dssp TEEEEEEGGGTEEEEEETTTCCEEEEEE--CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEE--EECTTCCTT
T ss_pred CEEEEEEcCCCEEEEEECcccEEEEEcC--CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEE--EEcCCcccc
Confidence 33444443 568888888766666663 2334444444 345777776 456776666554554332 23333
Q ss_pred --eeEEEEeCCCCCCCCCcceEEEEEe-cCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeC-C----
Q 004094 217 --EISCLDINPIGENPSYSQIAAVGMW-TDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALG-D---- 288 (774)
Q Consensus 217 --~is~l~~~~~~~~~~~~~~~~vg~~-~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~-~---- 288 (774)
.+..+++. ...+.|+.| .++.|.++++.+.+.+...... ..|..+.+.+ +.. ++++.. +
T Consensus 130 ~~~p~~i~~~--------~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~--dG~-l~v~~~~~~~~~ 196 (328)
T 3dsm_A 130 SGSTEQMVQY--------GKYVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTSLVMDK--YNK-MWTITDGGYEGS 196 (328)
T ss_dssp TCBCCCEEEE--------TTEEEEEECTTCCEEEEEETTTTEEEEEEECS--SCBCCCEECT--TSE-EEEEBCCBCTTC
T ss_pred CCCcceEEEE--------CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--CCccceEEcC--CCC-EEEEECCCccCC
Confidence 56666662 356788888 4889999999887665443332 3577776543 222 455443 2
Q ss_pred ------CcEEEEEEecCCCccccceeeec--CCCCeEEEEEEeCCcceEEEecCCCeEEEec-CCcEEEeee-c--ccCc
Q 004094 289 ------GHLLNFLLNMKTGELTDRKKVSL--GTQPITLRTFSSKNTTHVFAASDRPTVIYSS-NKKLLYSNV-N--LKEV 356 (774)
Q Consensus 289 ------G~l~~y~~~~~~~~l~~~~~~~l--G~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~-~~~~~~~~~-~--~~~i 356 (774)
+.| |.+|..++.+.. ...+ |..|..+. +. .+...++++.. ..+.+.. .+++.-.+. . ....
T Consensus 197 ~~~~~~~~v--~~id~~t~~v~~--~~~~~~g~~p~~la-~~-~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p 269 (328)
T 3dsm_A 197 PYGYEAPSL--YRIDAETFTVEK--QFKFKLGDWPSEVQ-LN-GTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKY 269 (328)
T ss_dssp SSCBCCCEE--EEEETTTTEEEE--EEECCTTCCCEEEE-EC-TTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCE
T ss_pred ccccCCceE--EEEECCCCeEEE--EEecCCCCCceeEE-Ee-cCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCce
Confidence 444 445665554332 2233 55665543 22 13456666655 3223322 233210010 0 0111
Q ss_pred eeeecccCCCCCCcEEEEe----CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEe
Q 004094 357 SHMCPFNSAAFPDSLAIAK----EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQ 407 (774)
Q Consensus 357 ~~~~~f~~~~~~~~l~~~~----~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~ 407 (774)
.+++ ++ ...+.++.+. .+.=.+..++.. .-.++++++|..|..+++-
T Consensus 270 ~gi~-vd--p~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~~ 320 (328)
T 3dsm_A 270 YGLT-VN--PNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCWK 320 (328)
T ss_dssp EEEE-EC--TTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEEE
T ss_pred EEEE-Ec--CCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEEe
Confidence 1111 11 0012233443 233344455544 4467889999999998874
No 144
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.18 E-value=3.6 Score=43.82 Aligned_cols=218 Identities=11% Similarity=0.077 Sum_probs=113.9
Q ss_pred CeEEEEEEcCCCCeEEEEE-eCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEE
Q 004094 377 GELTIGTIDDIQKLHIRSI-PLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGC 455 (774)
Q Consensus 377 ~~l~i~~l~~~~~~~~~~i-~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~ 455 (774)
+.+.+..++... .+.+ .-...+..++++|+.+.++.++.+. ....|.++|..+.+....... ...+.
T Consensus 159 ~~i~i~d~~g~~---~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-------~~~~i~~~d~~tg~~~~l~~~--~~~~~ 226 (415)
T 2hqs_A 159 YELRVSDYDGYN---QFVVHRSPQPLMSPAWSPDGSKLAYVTFES-------GRSALVIQTLANGAVRQVASF--PRHNG 226 (415)
T ss_dssp EEEEEEETTSCS---CEEEEEESSCEEEEEECTTSSEEEEEECTT-------SSCEEEEEETTTCCEEEEECC--SSCEE
T ss_pred ceEEEEcCCCCC---CEEEeCCCCcceeeEEcCCCCEEEEEEecC-------CCcEEEEEECCCCcEEEeecC--CCccc
Confidence 356666654322 1222 1234567789999998877776542 235799999988766432222 22333
Q ss_pred EEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCe-EEEEEC--CEEEE
Q 004094 456 SILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGK-LLAAIN--QKIQL 531 (774)
Q Consensus 456 si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~-lv~~~g--~~l~v 531 (774)
++ .+..+++.+++.+.. .....|++|++..++++.+. ...+.+.+++-- +|+ |+++.+ ....+
T Consensus 227 ~~---~~spdg~~la~~~~~--------~g~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 227 AP---AFSPDGSKLAFALSK--------TGSLNLYVMDLASGQIRQVT--DGRSNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp EE---EECTTSSEEEEEECT--------TSSCEEEEEETTTCCEEECC--CCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred CE---EEcCCCCEEEEEEec--------CCCceEEEEECCCCCEEeCc--CCCCcccceEECCCCCEEEEEECCCCCcEE
Confidence 33 355444444434431 12357999988776664433 335667776643 444 666654 32334
Q ss_pred EEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEecccc-EEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCe-
Q 004094 532 YKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKS-ISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI- 609 (774)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~S-v~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~- 609 (774)
|.|+.. .+ +................+..|++|+++....+ ..++.|+.+..+...+.... .+.++.+-.++.
T Consensus 294 ~~~d~~-~~--~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~---~~~~~~~spdg~~ 367 (415)
T 2hqs_A 294 YKVNIN-GG--APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF---LDETPSLAPNGTM 367 (415)
T ss_dssp EEEETT-SS--CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS---SCEEEEECTTSSE
T ss_pred EEEECC-CC--CEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC---CcCCeEEcCCCCE
Confidence 444322 22 22211111112222333445778887766543 45666787776665554332 555666655544
Q ss_pred EEE-EccCC--cEEEEeeC
Q 004094 610 YLG-AENNF--NLFTVRKN 625 (774)
Q Consensus 610 ~l~-~D~~g--nl~~l~~~ 625 (774)
++. ++..+ .|+++..+
T Consensus 368 l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 368 VIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp EEEEEEETTEEEEEEEETT
T ss_pred EEEEEcCCCccEEEEEECC
Confidence 443 33334 45655543
No 145
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=94.92 E-value=3.3 Score=41.06 Aligned_cols=191 Identities=11% Similarity=-0.006 Sum_probs=99.9
Q ss_pred CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC-CCceEEEEEEEEEcCCCceEEEEEeee
Q 004094 398 GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD-TFEYGCSILSCSFSDDSNVYYCVGTAY 476 (774)
Q Consensus 398 ~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~-~~E~~~si~~~~~~~~~~~~i~VGT~~ 476 (774)
...|..++++++.+.++..... ..|..+|+ +.+.. .+.+. ....+.++. +..++ .+.|++.
T Consensus 98 ~~~~~~i~~~~~g~l~v~~~~~----------~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~---~~~~g--~l~v~~~- 159 (299)
T 2z2n_A 98 DSAPYGITEGPNGDIWFTEMNG----------NRIGRITD-DGKIR-EYELPNKGSYPSFIT---LGSDN--ALWFTEN- 159 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTT----------TEEEEECT-TCCEE-EEECSSTTCCEEEEE---ECTTS--CEEEEET-
T ss_pred CCCceeeEECCCCCEEEEecCC----------ceEEEECC-CCCEE-EecCCCCCCCCceEE---EcCCC--CEEEEeC-
Confidence 3468889988877665543221 25777787 44332 33332 233445443 33322 3444431
Q ss_pred eCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEEEE--CCEEEEEEeeecCCCchhhhhhcccccc
Q 004094 477 VLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQLYKWMLRDDGTRELQSECGHHGH 553 (774)
Q Consensus 477 ~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~~--g~~l~v~~~~~~~~~~~~l~~~~~~~~~ 553 (774)
..|.|+.|+. +++++..........+.+++.- +|.|+++. ++.|..++. .+. +.....-...
T Consensus 160 --------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~----~g~--~~~~~~~~~~ 224 (299)
T 2z2n_A 160 --------QNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT----SGE--ITEFKIPTPN 224 (299)
T ss_dssp --------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT----TCC--EEEEECSSTT
T ss_pred --------CCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC----CCc--EEEEECCCCC
Confidence 2367777776 5555543111112346666654 57788777 567776552 222 1111000011
Q ss_pred eEEEEEEEe-CCEEEEEecc-ccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccCCcEEEEeeC
Q 004094 554 ILALYVQTR-GDFIVVGDLM-KSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKN 625 (774)
Q Consensus 554 ~~~~~l~~~-~~~I~vgD~~-~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~ 625 (774)
..+..+... ++.+++++.. .++ .+|+. +.++....-......+.++.+ .++.+.+++..+.+..+...
T Consensus 225 ~~~~~i~~~~~g~l~v~~~~~~~i--~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~ 294 (299)
T 2z2n_A 225 ARPHAITAGAGIDLWFTEWGANKI--GRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLI 294 (299)
T ss_dssp CCEEEEEECSTTCEEEEETTTTEE--EEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC
T ss_pred CCceeEEECCCCCEEEeccCCceE--EEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcC
Confidence 234455543 3368999855 454 45676 455555532222344566666 66777777667778877664
No 146
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=94.54 E-value=5.2 Score=41.60 Aligned_cols=122 Identities=9% Similarity=0.067 Sum_probs=63.7
Q ss_pred EEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEe-ec-
Q 004094 431 FVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE-TK- 508 (774)
Q Consensus 431 ~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~-~~- 508 (774)
.+..+|+.+.+.+.++.... ..++. .. ...+.+++ ..|.|+.|+...++.. ...+ ..
T Consensus 250 ~l~~~d~~tG~~~w~~~~~~---~~~~~---~~---~~~l~~~~----------~~g~l~~~d~~tG~~~--w~~~~~~~ 308 (376)
T 3q7m_A 250 NLTALDLRSGQIMWKRELGS---VNDFI---VD---GNRIYLVD----------QNDRVMALTIDGGVTL--WTQSDLLH 308 (376)
T ss_dssp CEEEEETTTCCEEEEECCCC---EEEEE---EE---TTEEEEEE----------TTCCEEEEETTTCCEE--EEECTTTT
T ss_pred EEEEEECCCCcEEeeccCCC---CCCce---EE---CCEEEEEc----------CCCeEEEEECCCCcEE--EeecccCC
Confidence 57788998888876665432 22221 11 23555665 2478888887766643 2222 11
Q ss_pred CceeEeccccCeEEEEEC-CEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEeccccEEEE
Q 004094 509 GAVYSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLL 578 (774)
Q Consensus 509 g~v~~i~~~~~~lv~~~g-~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~ 578 (774)
....+....+++|+++.. ..|+.++.. +|+ ++.................++.|++++....+..+
T Consensus 309 ~~~~~~~~~~~~l~v~~~~g~l~~~d~~---tG~--~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~ 374 (376)
T 3q7m_A 309 RLLTSPVLYNGNLVVGDSEGYLHWINVE---DGR--FVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSI 374 (376)
T ss_dssp SCCCCCEEETTEEEEECTTSEEEEEETT---TCC--EEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEE
T ss_pred CcccCCEEECCEEEEEeCCCeEEEEECC---CCc--EEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEE
Confidence 222333334788877765 467776532 332 21111110000111122358899999887776543
No 147
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=94.31 E-value=4.6 Score=40.00 Aligned_cols=194 Identities=13% Similarity=0.114 Sum_probs=97.7
Q ss_pred cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC-----CCceEEEEEEEEEcCCCceEEEEEe
Q 004094 400 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD-----TFEYGCSILSCSFSDDSNVYYCVGT 474 (774)
Q Consensus 400 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~-----~~E~~~si~~~~~~~~~~~~i~VGT 474 (774)
.|..++++++.+.|+..... ..|..+|+. .+.+..+... ....+.++. +...... +.|+.
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~----------~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~---~~~~~g~-l~v~~ 95 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNN----------HRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVA---VVRNSGD-IIVTE 95 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGG----------TEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEE---EETTTTE-EEEEE
T ss_pred CCceEEECCCCCEEEEECCC----------CEEEEECCC-CcEEEEecccCCCcccccCceEEE---EEcCCCe-EEEEc
Confidence 57888888887755543322 378888886 4555544321 112344443 3222233 44443
Q ss_pred eeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEEEE--CCEEEEEEeeecCCCchhhhhhcccc
Q 004094 475 AYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQLYKWMLRDDGTRELQSECGHH 551 (774)
Q Consensus 475 ~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~~--g~~l~v~~~~~~~~~~~~l~~~~~~~ 551 (774)
.. ..++|++|+ .++++...........+.+++.- +|.|+++. ++.|++|+. ++. .+.......
T Consensus 96 ~~--------~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~----~g~-~~~~~~~~~ 161 (286)
T 1q7f_A 96 RS--------PTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ----NGN-VLHKFGCSK 161 (286)
T ss_dssp CG--------GGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT----TSC-EEEEEECTT
T ss_pred CC--------CCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC----CCC-EEEEeCCCC
Confidence 11 146888887 33433211111112346666643 56777775 357777552 221 111111001
Q ss_pred cceEEEEEEEe-CCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccCC--cEEEEe
Q 004094 552 GHILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNF--NLFTVR 623 (774)
Q Consensus 552 ~~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~g--nl~~l~ 623 (774)
....+..+... ++.++++|...+- +..|+.+...+..+..+-......++.+-.++.++++|... .|.++.
T Consensus 162 ~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~ 235 (286)
T 1q7f_A 162 HLEFPNGVVVNDKQEIFISDNRAHC-VKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT 235 (286)
T ss_dssp TCSSEEEEEECSSSEEEEEEGGGTE-EEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred ccCCcEEEEECCCCCEEEEECCCCE-EEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence 11134445544 3468899876542 34577766666666544222344444443445677777643 577765
No 148
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=94.31 E-value=2.8 Score=46.36 Aligned_cols=224 Identities=11% Similarity=0.055 Sum_probs=108.8
Q ss_pred CCEEEEEECCCCCeeE--EecCCC-ccCceeEEeeee----cCeeEEEEEeCCCcEEEEEEecCCCc------ccc-cee
Q 004094 243 DISVRIFSLPDLNLIT--KEHLGG-EIIPRSVLLCAF----EGISYLLCALGDGHLLNFLLNMKTGE------LTD-RKK 308 (774)
Q Consensus 243 ~~~i~i~~l~~~~~~~--~~~l~~-~~~p~si~~~~~----~~~~~L~vgl~~G~l~~y~~~~~~~~------l~~-~~~ 308 (774)
|++|+||++...+... ...+.. .....++...+. ++..+|..|..||.+..|++...... +.. ...
T Consensus 182 D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~ 261 (524)
T 2j04_B 182 SSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLT 261 (524)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEE
T ss_pred CceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEE
Confidence 6789999986533211 111110 012344544432 12356888999999999988643110 000 001
Q ss_pred eecCCCCeEEEEEEeCCcceEEEecC-CCeEEEecC-Cc--EEEeeecccCceeee-cccCCCCC-CcEEEEe-CCeEEE
Q 004094 309 VSLGTQPITLRTFSSKNTTHVFAASD-RPTVIYSSN-KK--LLYSNVNLKEVSHMC-PFNSAAFP-DSLAIAK-EGELTI 381 (774)
Q Consensus 309 ~~lG~~pv~l~~~~~~~~~~v~~~~~-~p~~l~~~~-~~--~~~~~~~~~~i~~~~-~f~~~~~~-~~l~~~~-~~~l~i 381 (774)
......++.=..+. ....+...+. ....++.-+ +. ....+.....|.+++ .|+. .+ ..|+-.+ ++.+++
T Consensus 262 l~~h~~~v~sv~~s--~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~--~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 262 LSLADSLITTFDFL--SPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD--FEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp ECCTTTCEEEEEES--SSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT--TSCCEEEEEETTSEEEE
T ss_pred EEcCCCCEEEEEec--CCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC--CCCeEEEEeccCCeEEE
Confidence 11122333222222 2222322232 333333322 21 122233345666664 3432 11 2233333 678999
Q ss_pred EEEcCCCCeEEEEEeCC-CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEE
Q 004094 382 GTIDDIQKLHIRSIPLG-EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSC 460 (774)
Q Consensus 382 ~~l~~~~~~~~~~i~l~-~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~ 460 (774)
..+.+......-.-... ..+..++|+|..+.++.+..+ ..+++.|..+...+.++.- ....|.+++
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d----------~tv~lwd~~~~~~~~~l~g-H~~~V~sva-- 404 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA----------SSLRAVPSRAAFAVHPLVS-RETTITAIG-- 404 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSS----------SEEEEEETTCTTCCEEEEE-CSSCEEEEE--
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCC----------CcEEEEECcccccceeeec-CCCceEEEE--
Confidence 88765432111111112 235779999998876655433 2699999877655443331 233455554
Q ss_pred EEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe
Q 004094 461 SFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE 495 (774)
Q Consensus 461 ~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~ 495 (774)
+.. ..++++.|. ..|.+.+|+..
T Consensus 405 -~Sp-~g~~l~Sgs----------~Dgtv~lwd~~ 427 (524)
T 2j04_B 405 -VSR-LHPMVLAGS----------ADGSLIITNAA 427 (524)
T ss_dssp -CCS-SCCBCEEEE----------TTTEEECCBSC
T ss_pred -eCC-CCCeEEEEE----------CCCEEEEEech
Confidence 443 345677665 23778887653
No 149
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=94.18 E-value=6.6 Score=41.30 Aligned_cols=268 Identities=8% Similarity=0.021 Sum_probs=133.4
Q ss_pred CcEEEEecCCCceeeeEeCCCCCcEEEEEEC--CCEEEEEEc----------CCeEEEEEEcCceEEEEEeccC------
Q 004094 153 GSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATG----------GGHLVYLEIGDGILTEVKHAQL------ 214 (774)
Q Consensus 153 ~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~----------~~~~~~~~~~~~~l~~~~~~~l------ 214 (774)
+.|.++|.++.+.+..+.... .-- .+++ +..+.++.. .+.+..+.....+ .+...++
T Consensus 59 ~~V~ViD~~t~~v~~~I~vG~--~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~--v~~~I~v~~g~r~ 133 (386)
T 3sjl_D 59 TQQFVIDGEAGRVIGMIDGGF--LPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTADIELPDAPRF 133 (386)
T ss_dssp EEEEEEETTTTEEEEEEEECS--SCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCC
T ss_pred CEEEEEECCCCeEEEEEECCC--CCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe--EEEEEECCCcccc
Confidence 467888888766666665322 222 3333 456666642 1233333322222 2222222
Q ss_pred --CceeEEEEeCCCCCCCCCcceEEEEEec-CCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcE
Q 004094 215 --EYEISCLDINPIGENPSYSQIAAVGMWT-DISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHL 291 (774)
Q Consensus 215 --~~~is~l~~~~~~~~~~~~~~~~vg~~~-~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l 291 (774)
...+..+++++ ...++.|+... ++.+.++++.+.+.+.+-.++. ...+.+-+. ..++..+.||.+
T Consensus 134 ~~g~~P~~~a~sp------DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-----~~~~~P~g~-~~~~~~~~DG~~ 201 (386)
T 3sjl_D 134 LVGTYPWMTSLTP------DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-----CYHIFPTAP-DTFFMHCRDGSL 201 (386)
T ss_dssp CBSCCGGGEEECT------TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----EEEEEEEET-TEEEEEETTSCE
T ss_pred ccCCCCceEEEcC------CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-----cceeecCCC-ceeEEECCCCCE
Confidence 12344566654 25677777653 6899999999988776544432 111122222 234466778888
Q ss_pred EEEEEecCCCccccceee--ecCCCCeEEE-EEEeCCcceEEEecCCCeEEEecC-CcEEE-eeecc------------c
Q 004094 292 LNFLLNMKTGELTDRKKV--SLGTQPITLR-TFSSKNTTHVFAASDRPTVIYSSN-KKLLY-SNVNL------------K 354 (774)
Q Consensus 292 ~~y~~~~~~~~l~~~~~~--~lG~~pv~l~-~~~~~~~~~v~~~~~~p~~l~~~~-~~~~~-~~~~~------------~ 354 (774)
+...+... +.+...+.. ..+..|+... .+...+...+|++.+.-..+.... +...+ .++.. .
T Consensus 202 ~~v~~~~~-g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~ 280 (386)
T 3sjl_D 202 AKVAFGTE-GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPG 280 (386)
T ss_dssp EEEECCSS-SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEEC
T ss_pred EEEECCCC-CeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCC
Confidence 87766542 333221111 1222333211 111112223444433222222111 11111 11110 0
Q ss_pred CceeeecccCCCCCCcEEEEeC---------CeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCC
Q 004094 355 EVSHMCPFNSAAFPDSLAIAKE---------GELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAE 425 (774)
Q Consensus 355 ~i~~~~~f~~~~~~~~l~~~~~---------~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~ 425 (774)
.... ..++. -.+.++.+.+ ..=.+..++....=.+++|+++..|..++++++.+..++++...
T Consensus 281 g~q~-~a~~~--~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~----- 352 (386)
T 3sjl_D 281 GWQQ-VAYHR--ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG----- 352 (386)
T ss_dssp SSSC-EEEET--TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETT-----
T ss_pred Ccce-eeECC--CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCC-----
Confidence 0000 01110 1122222221 23456677766666789999999999999999987443333331
Q ss_pred ceeeeEEEEEECCCceEEEEEECC
Q 004094 426 ESEMHFVRLLDDQTFEFISTYPLD 449 (774)
Q Consensus 426 ~~~~~~l~l~d~~~~~~i~~~~~~ 449 (774)
...|-++|..+.+.+.++...
T Consensus 353 ---~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 353 ---DKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp ---TTEEEEEETTTCCEEEEECCC
T ss_pred ---CCeEEEEECCCCcEEEEecCC
Confidence 237899999999999988765
No 150
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=94.13 E-value=7.3 Score=41.62 Aligned_cols=265 Identities=10% Similarity=0.027 Sum_probs=131.7
Q ss_pred CcEEEEecCCCceeeeEeCCCCCcEEEEEEC--CCEEEEEEc----------CCeEEEEEEcCceEEEEEeccCC-----
Q 004094 153 GSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATG----------GGHLVYLEIGDGILTEVKHAQLE----- 215 (774)
Q Consensus 153 ~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~----------~~~~~~~~~~~~~l~~~~~~~l~----- 215 (774)
+.|.++|.++.+.+..+... ..- ..+++ +..+.|+.. ++.+..+.....+. +...++.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG--~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v--v~~I~v~g~~r~ 173 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGG--FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP--IADIELPDAPRF 173 (426)
T ss_dssp EEEEEEETTTTEEEEEEEEC--SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE--EEEEEETTCCCC
T ss_pred CeEEEEECCCCEEEEEEECC--CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE--EEEEECCCcccc
Confidence 47888998877666666532 222 33333 556777652 23343433222222 2222221
Q ss_pred ---ceeEEEEeCCCCCCCCCcceEEEEEec-CCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcE
Q 004094 216 ---YEISCLDINPIGENPSYSQIAAVGMWT-DISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHL 291 (774)
Q Consensus 216 ---~~is~l~~~~~~~~~~~~~~~~vg~~~-~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l 291 (774)
..+..+.+++ ...+++|+.+. +++|.++++.+.+.+....++. ...+..-+. ..++.-..||.+
T Consensus 174 ~~g~~P~~~~~sp------DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-----~~~~~p~g~-~~~v~~~~dG~~ 241 (426)
T 3c75_H 174 LVGTYQWMNALTP------DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-----CYHIFPASP-TVFYMNCRDGSL 241 (426)
T ss_dssp CBSCCGGGSEECT------TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----EEEEEEEET-TEEEEEETTSSE
T ss_pred ccCCCcceEEEcC------CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-----ceeeccCCC-cEEEEEcCCCCE
Confidence 1233344543 25678888774 6899999999988776544432 122222222 334556678888
Q ss_pred EEEEEecCCCccccc--eeeecCCCCeEEE-EEEeCCcceEEEecCCCeE--EEecCCcEEEe-eecc---cCc-eeeec
Q 004094 292 LNFLLNMKTGELTDR--KKVSLGTQPITLR-TFSSKNTTHVFAASDRPTV--IYSSNKKLLYS-NVNL---KEV-SHMCP 361 (774)
Q Consensus 292 ~~y~~~~~~~~l~~~--~~~~lG~~pv~l~-~~~~~~~~~v~~~~~~p~~--l~~~~~~~~~~-~~~~---~~i-~~~~~ 361 (774)
+...+. +++.... +....+..|+... ++.. ....++..+....+ +-...+...+. +... ..+ ....+
T Consensus 242 ~~V~~~--~~~v~~~~~~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p 318 (426)
T 3c75_H 242 ARVDFA--DGETKVTNTEVFHTEDELLINHPAFSL-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP 318 (426)
T ss_dssp EEEECC--TTCCEEEECCCCSCTTSCBCSCCEECT-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred EEEECC--CCcEEEEeeeeeccCCCceeeEeeecC-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence 877662 2332211 1223455553221 1111 22333333332322 11111222111 0000 000 00011
Q ss_pred ccC---CCCCC-cEEEEe-C---------CeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCC-EEEEEEeccCCCCCc
Q 004094 362 FNS---AAFPD-SLAIAK-E---------GELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSR-TFAICSLKNQSCAEE 426 (774)
Q Consensus 362 f~~---~~~~~-~l~~~~-~---------~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~-~~~v~~~~~~~~~~~ 426 (774)
... ...++ .-+|+. . ..=.+.-++....-.+++|+++..|..++++++.+ .+++....
T Consensus 319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~------- 391 (426)
T 3c75_H 319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAG------- 391 (426)
T ss_dssp CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETT-------
T ss_pred CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCC-------
Confidence 000 00011 222222 1 12245556665556789999999999999999998 66665532
Q ss_pred eeeeEEEEEECCCceEEEEE
Q 004094 427 SEMHFVRLLDDQTFEFISTY 446 (774)
Q Consensus 427 ~~~~~l~l~d~~~~~~i~~~ 446 (774)
...|.+||..+++++.++
T Consensus 392 --s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 392 --TQTLHIYDAATGEELRSV 409 (426)
T ss_dssp --TTEEEEEETTTCCEEEEE
T ss_pred --CCeEEEEECCCCCEEEEe
Confidence 137999999999998876
No 151
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=93.93 E-value=2.4 Score=41.73 Aligned_cols=191 Identities=10% Similarity=0.042 Sum_probs=93.4
Q ss_pred cEEEEeCCeEEEEEEcC-CCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEEC
Q 004094 370 SLAIAKEGELTIGTIDD-IQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPL 448 (774)
Q Consensus 370 ~l~~~~~~~l~i~~l~~-~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~ 448 (774)
.+++..++.+.+..+.. ........-+-...+..+.++|+.+.+++++... .....|..++..+.+. ..+
T Consensus 55 ~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~------~~~~~l~~~~~~~~~~---~~~ 125 (297)
T 2ojh_A 55 YLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVE------FGKSAIYLLPSTGGTP---RLM 125 (297)
T ss_dssp EEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTT------TSSCEEEEEETTCCCC---EEC
T ss_pred EEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCC------CCcceEEEEECCCCce---EEe
Confidence 35555667777777665 3221111101113456789999988777766332 1234677777655442 233
Q ss_pred CCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEe--CCeEEEEEEEeecCceeEeccc-cCe-EEEE
Q 004094 449 DTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVE--DGKLQLIAEKETKGAVYSLNAF-NGK-LLAA 524 (774)
Q Consensus 449 ~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~--~~kl~~~~~~~~~g~v~~i~~~-~~~-lv~~ 524 (774)
...+.+.++ .+..+++.+++.+.. .|.+.+|.+. .++.+.+. ...+.+.+++-- +|. |+++
T Consensus 126 ~~~~~~~~~---~~spdg~~l~~~~~~----------~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~ 190 (297)
T 2ojh_A 126 TKNLPSYWH---GWSPDGKSFTYCGIR----------DQVFDIYSMDIDSGVETRLT--HGEGRNDGPDYSPDGRWIYFN 190 (297)
T ss_dssp CSSSSEEEE---EECTTSSEEEEEEEE----------TTEEEEEEEETTTCCEEECC--CSSSCEEEEEECTTSSEEEEE
T ss_pred ecCCCccce---EECCCCCEEEEEECC----------CCceEEEEEECCCCcceEcc--cCCCccccceECCCCCEEEEE
Confidence 334444443 344444444434432 2455666654 34443322 335667666543 444 5555
Q ss_pred E--CCEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEecc---------ccEEEEEEEccCCeE
Q 004094 525 I--NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLM---------KSISLLIYKHEEGAI 587 (774)
Q Consensus 525 ~--g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~---------~Sv~~~~~~~~~~~l 587 (774)
. +..+.+|.++... .++...............+..+++|+++... ....++.|+.+..+.
T Consensus 191 ~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 191 SSRTGQMQIWRVRVDG---SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp ECTTSSCEEEEEETTS---SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred ecCCCCccEEEECCCC---CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 4 4567777765221 1221111111112222333356677776654 224456677655443
No 152
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=93.92 E-value=6.8 Score=40.56 Aligned_cols=292 Identities=10% Similarity=0.080 Sum_probs=149.0
Q ss_pred eEEEEEeCC--CcEEEEEEecCCCccccceeeecC-C-CCeEEEEEEeCCcceEEEecCCCeEEEe-c-CCcEEE-eeec
Q 004094 280 SYLLCALGD--GHLLNFLLNMKTGELTDRKKVSLG-T-QPITLRTFSSKNTTHVFAASDRPTVIYS-S-NKKLLY-SNVN 352 (774)
Q Consensus 280 ~~L~vgl~~--G~l~~y~~~~~~~~l~~~~~~~lG-~-~pv~l~~~~~~~~~~v~~~~~~p~~l~~-~-~~~~~~-~~~~ 352 (774)
.+|+||+.. |.+..|+++..+|.+........+ . .|..+ .+.. +...+++.+.....++. . .+++.. ....
T Consensus 3 ~~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~-a~sp-dg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~ 80 (365)
T 1jof_A 3 HHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWM-TFDH-ERKNIYGAAMKKWSSFAVKSPTEIVHEASHP 80 (365)
T ss_dssp EEEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEE-EECT-TSSEEEEEEBTEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEE-EECC-CCCEEEEEccceEEEEEECCCCCEEEeeEee
Confidence 468888874 568899998877776543332222 2 34333 3322 33456666654322332 2 344421 1111
Q ss_pred ccCceeeecccCCCCCCc---EEEE---------------eCCeEEEEEEcCCCCeEEEEEe-----CCCcccEEEEecC
Q 004094 353 LKEVSHMCPFNSAAFPDS---LAIA---------------KEGELTIGTIDDIQKLHIRSIP-----LGEHPRRICHQEQ 409 (774)
Q Consensus 353 ~~~i~~~~~f~~~~~~~~---l~~~---------------~~~~l~i~~l~~~~~~~~~~i~-----l~~tp~~i~y~~~ 409 (774)
... .+.+....|++ ++++ .++.+.+..++...++. +.+. -+..|+.++++|+
T Consensus 81 ~~g----~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~spd 155 (365)
T 1jof_A 81 IGG----HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLE-KNVQNYEYQENTGIHGMVFDPT 155 (365)
T ss_dssp CCS----SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEE-EEEEEEECCTTCCEEEEEECTT
T ss_pred cCC----CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCc-ceEeeEEeCCCCcceEEEECCC
Confidence 000 01111112332 3332 25668888887543332 2222 3457889999999
Q ss_pred CCEEEEEEeccCCCCCceeeeEEEEEECC-CceE--EEEEECCC-CceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCc
Q 004094 410 SRTFAICSLKNQSCAEESEMHFVRLLDDQ-TFEF--ISTYPLDT-FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPT 485 (774)
Q Consensus 410 ~~~~~v~~~~~~~~~~~~~~~~l~l~d~~-~~~~--i~~~~~~~-~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~ 485 (774)
.+.++++.... ..|.++|.. +.+. +..+.++. +..+..+. +..+++ +++|+.. .
T Consensus 156 G~~l~~~~~~~---------~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~---~spdg~-~l~v~~~---------~ 213 (365)
T 1jof_A 156 ETYLYSADLTA---------NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA---MHPTGN-YLYALME---------A 213 (365)
T ss_dssp SSEEEEEETTT---------TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE---ECTTSS-EEEEEET---------T
T ss_pred CCEEEEEcCCC---------CEEEEEEECCCCCEEEeeeEecCCCCCCCCEeE---ECCCCC-EEEEEEC---------C
Confidence 88665543221 268888765 5543 34455543 45555543 554444 4554431 2
Q ss_pred ceEEEEEEEe--CCeEEEE-EEE-eec----C---------ceeEec-cc-cC-eEEEEE-C-C-----EEEEEEeeecC
Q 004094 486 KGRILVFIVE--DGKLQLI-AEK-ETK----G---------AVYSLN-AF-NG-KLLAAI-N-Q-----KIQLYKWMLRD 538 (774)
Q Consensus 486 ~Grl~v~~i~--~~kl~~~-~~~-~~~----g---------~v~~i~-~~-~~-~lv~~~-g-~-----~l~v~~~~~~~ 538 (774)
.|++.+|+++ .++++.. ... ..+ | .+.+++ -- +| +|+++. + + .|.+|+++.
T Consensus 214 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~-- 291 (365)
T 1jof_A 214 GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD-- 291 (365)
T ss_dssp TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT--
T ss_pred CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC--
Confidence 3688899886 3555431 111 111 2 366666 22 45 455543 3 3 799988742
Q ss_pred CCchhhhhhc---c-cccceEEEEEEE---eCCEEEEEecc-ccEEEEEEEccCCeEEEEec--cCCcceeEEEEEee
Q 004094 539 DGTRELQSEC---G-HHGHILALYVQT---RGDFIVVGDLM-KSISLLIYKHEEGAIEERAR--DYNANWMSAVEILD 606 (774)
Q Consensus 539 ~~~~~l~~~~---~-~~~~~~~~~l~~---~~~~I~vgD~~-~Sv~~~~~~~~~~~l~~~a~--D~~~~~v~~~~~l~ 606 (774)
.++ +.... . .......+.++- .++++++++.. ..|.++..+.+ .|..+++ -+.|.++..+.++|
T Consensus 292 ~g~--~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~--~l~~~~~~~~~~p~~~~~~~~~~ 365 (365)
T 1jof_A 292 CGS--IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE--FLHRVARVRIPEPGFGMNAIWYD 365 (365)
T ss_dssp TSC--EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT--EEEEEEEEECCSTTEEEEEEEEC
T ss_pred CCC--EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh--hCceeeEEEcCCCcceeeeEecC
Confidence 232 22110 0 111112233444 58899999875 67888776654 6665542 23455566666653
No 153
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=93.88 E-value=5.7 Score=39.57 Aligned_cols=100 Identities=8% Similarity=-0.028 Sum_probs=55.5
Q ss_pred CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeC
Q 004094 399 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 478 (774)
Q Consensus 399 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~ 478 (774)
..|..++|+++.+.++++... ...|..+|+.+. ...+... ...+.++. +..+++ ++|++.
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~---------~~~i~~~~~~~~--~~~~~~~-~~~~~~l~---~~~dg~--l~v~~~--- 87 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVR---------QNRTWAWSDDGQ--LSPEMHP-SHHQNGHC---LNKQGH--LIACSH--- 87 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGG---------GTEEEEEETTSC--EEEEESS-CSSEEEEE---ECTTCC--EEEEET---
T ss_pred ccccCCeEeCCCCEEEEEeCC---------CCEEEEEECCCC--eEEEECC-CCCcceee---ECCCCc--EEEEec---
Confidence 357789999998844444332 237888998765 4445443 33445443 443333 445542
Q ss_pred CCCCCCcceEEEEEEEeCCeEEEEEEEee---cCceeEeccc-cCeEEEE
Q 004094 479 PEENEPTKGRILVFIVEDGKLQLIAEKET---KGAVYSLNAF-NGKLLAA 524 (774)
Q Consensus 479 ~~e~~~~~Grl~v~~i~~~kl~~~~~~~~---~g~v~~i~~~-~~~lv~~ 524 (774)
..++|++|+...++++.+..... ...+..++.- +|.|+++
T Consensus 88 ------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vt 131 (296)
T 3e5z_A 88 ------GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFS 131 (296)
T ss_dssp ------TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEE
T ss_pred ------CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEE
Confidence 23678888876666665432211 1223344433 6778775
No 154
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=93.42 E-value=9.6 Score=40.67 Aligned_cols=271 Identities=11% Similarity=0.027 Sum_probs=130.9
Q ss_pred eEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEe---------cCCEEEEEECCCCCeeEEecCCC-
Q 004094 195 HLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMW---------TDISVRIFSLPDLNLITKEHLGG- 264 (774)
Q Consensus 195 ~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~---------~~~~i~i~~l~~~~~~~~~~l~~- 264 (774)
.+..+.....+. +..++....+ .+++++ + ...++|+.+ .++.|.+++..+++.+..-.++.
T Consensus 100 ~VsVID~~t~~v--v~~I~vG~~P-gia~Sp--D----gk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~ 170 (426)
T 3c75_H 100 QQFVIDGSTGRI--LGMTDGGFLP-HPVAAE--D----GSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDA 170 (426)
T ss_dssp EEEEEETTTTEE--EEEEEECSSC-EEEECT--T----SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC
T ss_pred eEEEEECCCCEE--EEEEECCCCC-ceEECC--C----CCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCc
Confidence 444444433332 2334444455 778865 2 456777764 36789999998888876555531
Q ss_pred -----ccCceeEEeeeecCeeEEEEEeC--CCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCe
Q 004094 265 -----EIIPRSVLLCAFEGISYLLCALG--DGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPT 337 (774)
Q Consensus 265 -----~~~p~si~~~~~~~~~~L~vgl~--~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~ 337 (774)
...|+.+.+.+ +..+|++.-. ++.+.++ |..++++ .+.+.++.. ..+.+- +....+-++++..+
T Consensus 171 ~r~~~g~~P~~~~~sp--DGk~lyV~n~~~~~~VsVI--D~~t~kv--v~~I~v~g~-~~~~p~--g~~~~v~~~~dG~~ 241 (426)
T 3c75_H 171 PRFLVGTYQWMNALTP--DNKNLLFYQFSPAPAVGVV--DLEGKTF--DRMLDVPDC-YHIFPA--SPTVFYMNCRDGSL 241 (426)
T ss_dssp CCCCBSCCGGGSEECT--TSSEEEEEECSSSCEEEEE--ETTTTEE--EEEEECCSE-EEEEEE--ETTEEEEEETTSSE
T ss_pred cccccCCCcceEEEcC--CCCEEEEEecCCCCeEEEE--ECCCCeE--EEEEEcCCc-eeeccC--CCcEEEEEcCCCCE
Confidence 12467766553 3456787653 4566554 4433322 223344322 112211 11112223333333
Q ss_pred EEEec-CCcEEEe-----eecccCceeeecccCCCCCCcEEEEe-CCeEEEEEEcCCCCeEEEEEe--------CCCccc
Q 004094 338 VIYSS-NKKLLYS-----NVNLKEVSHMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIP--------LGEHPR 402 (774)
Q Consensus 338 ~l~~~-~~~~~~~-----~~~~~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~--------l~~tp~ 402 (774)
+.... .++.... .+...++....+| ...++.+++.+ ++.+.+..+.........+++ .+..|.
T Consensus 242 ~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~--~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~ 319 (426)
T 3c75_H 242 ARVDFADGETKVTNTEVFHTEDELLINHPAF--SLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPG 319 (426)
T ss_dssp EEEECCTTCCEEEECCCCSCTTSCBCSCCEE--CTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEEC
T ss_pred EEEECCCCcEEEEeeeeeccCCCceeeEeee--cCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccC
Confidence 22221 2222110 0000010000011 11123455554 455555555432211222222 222343
Q ss_pred E---EEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCC
Q 004094 403 R---ICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 479 (774)
Q Consensus 403 ~---i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~ 479 (774)
. ++++++.+.+.|................|.+||..+++.+.++.... .+.++. +..+++.++++...
T Consensus 320 g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--~P~gia---~spDg~~~lyv~n~---- 390 (426)
T 3c75_H 320 GWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--EIDSIN---VSQDAEPLLYALSA---- 390 (426)
T ss_dssp SSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEE---ECCSSSCEEEEEET----
T ss_pred CceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--CcCeEE---EccCCCEEEEEEcC----
Confidence 3 78898877666654321000000123579999999999999887643 444443 55555645554431
Q ss_pred CCCCCcceEEEEEEEeCCeE
Q 004094 480 EENEPTKGRILVFIVEDGKL 499 (774)
Q Consensus 480 ~e~~~~~Grl~v~~i~~~kl 499 (774)
..|.|.+++...+++
T Consensus 391 -----~s~~VsVID~~t~kv 405 (426)
T 3c75_H 391 -----GTQTLHIYDAATGEE 405 (426)
T ss_dssp -----TTTEEEEEETTTCCE
T ss_pred -----CCCeEEEEECCCCCE
Confidence 247899998865543
No 155
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=93.40 E-value=8.5 Score=39.97 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=45.4
Q ss_pred EEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCc--eEEEEEECCCCceEEEE
Q 004094 380 TIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTF--EFISTYPLDTFEYGCSI 457 (774)
Q Consensus 380 ~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~--~~i~~~~~~~~E~~~si 457 (774)
.+..++....-.+++++++. |..++++|+.+.++++. . ..|.++|..++ +.+.++. .-++.+..+
T Consensus 287 ~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n-~----------~~v~v~D~~t~~l~~~~~i~-~~G~~P~~~ 353 (361)
T 2oiz_A 287 EIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLD-G----------GNVNVYDISQPEPKLLRTIE-GAAEASLQV 353 (361)
T ss_dssp EEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEEC-S----------SCEEEEECSSSSCEEEEEET-TSCSSEEEE
T ss_pred eEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeC-C----------CeEEEEECCCCcceeeEEec-cCCCCcEEE
Confidence 34444544455788999999 99999999999655543 2 37999999999 8887652 234444443
No 156
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=93.33 E-value=8.6 Score=39.86 Aligned_cols=134 Identities=10% Similarity=0.095 Sum_probs=76.5
Q ss_pred CcEEEEecCCCceeeeEeCCC--------CCcEEEE-EECCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEE-EE
Q 004094 153 GSVRLVSSTSRELRNEWKSPP--------GYSVNVA-TANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISC-LD 222 (774)
Q Consensus 153 ~~i~l~~~~~~~~~~~~~~~~--------~~~I~~a-~~~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~-l~ 222 (774)
..+..++.++++.+.....+. +..+... ++.++.+++...++.+..+...+|++. .+.++..++.+ ..
T Consensus 63 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~--W~~~~~~~~~~~p~ 140 (376)
T 3q7m_A 63 GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVA--WQTKVAGEALSRPV 140 (376)
T ss_dssp SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEE--EEEECSSCCCSCCE
T ss_pred CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEE--EEEeCCCceEcCCE
Confidence 467778877655543333321 2234333 356778888877788888776656543 23333333211 11
Q ss_pred eCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccC----ceeEEeeeecCeeEEEEEeCCCcEEEEEEec
Q 004094 223 INPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEII----PRSVLLCAFEGISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 223 ~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~----p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 298 (774)
+ ....+++++. ++.+..++..+.+.++....+.... ..+.++. ...+++|..+|.|..+. .
T Consensus 141 ~--------~~~~v~v~~~-~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~----~~~v~~g~~~g~l~~~d--~ 205 (376)
T 3q7m_A 141 V--------SDGLVLIHTS-NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA----FGAAVVGGDNGRVSAVL--M 205 (376)
T ss_dssp E--------ETTEEEEECT-TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE----TTEEEECCTTTEEEEEE--T
T ss_pred E--------ECCEEEEEcC-CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE----CCEEEEEcCCCEEEEEE--C
Confidence 1 1346777777 8899999998888777655432111 0111111 24688899999887765 4
Q ss_pred CCCcc
Q 004094 299 KTGEL 303 (774)
Q Consensus 299 ~~~~l 303 (774)
.+|++
T Consensus 206 ~tG~~ 210 (376)
T 3q7m_A 206 EQGQM 210 (376)
T ss_dssp TTCCE
T ss_pred CCCcE
Confidence 34543
No 157
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=93.17 E-value=2.5 Score=46.78 Aligned_cols=188 Identities=11% Similarity=0.067 Sum_probs=108.8
Q ss_pred CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCc------eEEEEEEEEEcCCCceEEEE
Q 004094 399 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFE------YGCSILSCSFSDDSNVYYCV 472 (774)
Q Consensus 399 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E------~~~si~~~~~~~~~~~~i~V 472 (774)
..+..++++|+.+.+++++.+. .+++.|..+ .+..+ + ++ .+.+++ +.. ..++|++
T Consensus 86 ~~V~~vawSPdG~~LAs~s~dg----------~V~iwd~~~--~l~~l--~-~~~~~~~~sv~sva---fSP-DG~~LAs 146 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNNG----------NVSVFKDNK--MLTNL--D-SKGNLSSRTYHCFE---WNP-IESSIVV 146 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETTS----------CEEEEETTE--EEEEC--C-CSSCSTTTCEEEEE---ECS-SSSCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCC----------cEEEEeCCc--eeeec--c-CCCccccccEEEEE---EcC-CCCEEEE
Confidence 4577899999999999888663 588888654 33333 3 33 355543 544 4678898
Q ss_pred EeeeeCCCCCCCcceEEEEEEEeCCeE-----EEEEEE-----eecCceeEeccccCeEEE-EECCEEEEEEeeecCCCc
Q 004094 473 GTAYVLPEENEPTKGRILVFIVEDGKL-----QLIAEK-----ETKGAVYSLNAFNGKLLA-AINQKIQLYKWMLRDDGT 541 (774)
Q Consensus 473 GT~~~~~~e~~~~~Grl~v~~i~~~kl-----~~~~~~-----~~~g~v~~i~~~~~~lv~-~~g~~l~v~~~~~~~~~~ 541 (774)
|+ ..|.|.+|++..+++ -.+... .+.+.|++++-..+.|++ +.++.+++|+.+.. ..
T Consensus 147 gs----------~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~--~~ 214 (588)
T 2j04_A 147 GN----------EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSAS--SH 214 (588)
T ss_dssp EE----------TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSS--SS
T ss_pred Ec----------CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCC--cc
Confidence 87 348999999987643 122322 234699999866444544 34578888775321 10
Q ss_pred hhhh-hh-cccccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEe-eCC--eEEEEccC
Q 004094 542 RELQ-SE-CGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEIL-DDD--IYLGAENN 616 (774)
Q Consensus 542 ~~l~-~~-~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l-~~~--~~l~~D~~ 616 (774)
.+.. .. ..+...+ .++...|++|+.+- .+.|.+ |+..++++...-.. +...+..+.+. +++ .++.++.+
T Consensus 215 ~~~~~tL~~~h~~~V--~svaFsg~~LASa~-~~tIkL--Wd~~~~~~~~~~~g-h~~~V~~va~~~s~d~~~La~a~ed 288 (588)
T 2j04_A 215 QPVSRMIQNASRRKI--TDLKIVDYKVVLTC-PGYVHK--IDLKNYSISSLKTG-SLENFHIIPLNHEKESTILLMSNKT 288 (588)
T ss_dssp CCCEEEEECCCSSCC--CCEEEETTEEEEEC-SSEEEE--EETTTTEEEEEECS-CCSCCCEEEETTCSSCEEEEECSSC
T ss_pred ccceeeecccccCcE--EEEEEECCEEEEEe-CCeEEE--EECCCCeEEEEEcC-CCceEEEEEeeeCCCCCEEEEEcCC
Confidence 0000 00 0111222 33333377777664 466655 67667776444322 45556666552 333 36678888
Q ss_pred CcEEEEee
Q 004094 617 FNLFTVRK 624 (774)
Q Consensus 617 gnl~~l~~ 624 (774)
|. .++..
T Consensus 289 G~-klw~~ 295 (588)
T 2j04_A 289 SY-KVLLE 295 (588)
T ss_dssp EE-EEEES
T ss_pred CC-EEEee
Confidence 88 55544
No 158
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=92.82 E-value=8.2 Score=38.22 Aligned_cols=165 Identities=11% Similarity=-0.004 Sum_probs=96.9
Q ss_pred EEEEEeCCCc--ccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCce
Q 004094 391 HIRSIPLGEH--PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468 (774)
Q Consensus 391 ~~~~i~l~~t--p~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~ 468 (774)
.++++|.+.. |+-++|+++ +.+.+++... ..+.|..+|+.+.+++.++.++++.....+... +.
T Consensus 11 vv~~~p~~~~~f~~Gl~~~~d-g~Lyvstg~~-------~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-----g~- 76 (266)
T 2iwa_A 11 VLNEFPHDPYAFTQGLVYAEN-DTLFESTGLY-------GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-----NE- 76 (266)
T ss_dssp EEEEEECCTTCCEEEEEECST-TEEEEEECST-------TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-----TT-
T ss_pred EEEEEECCCCCCcccEEEeCC-CeEEEECCCC-------CCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-----CC-
Confidence 5778899864 689999987 4444444321 236899999999999999998877666554432 22
Q ss_pred EEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeec-CceeEeccccCeEEEEEC-CEEEEEEeeecCCCchhhhh
Q 004094 469 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETK-GAVYSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQS 546 (774)
Q Consensus 469 ~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~-g~v~~i~~~~~~lv~~~g-~~l~v~~~~~~~~~~~~l~~ 546 (774)
.+.+++- ..|++.+|+... ++++....+. +.-..++.-+++++++.| ++|.+++ ... .+..+
T Consensus 77 ~lyv~t~---------~~~~v~viD~~t--~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD--~~t---~~v~~ 140 (266)
T 2iwa_A 77 KLYQVVW---------LKNIGFIYDRRT--LSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEID--PHT---FKLIK 140 (266)
T ss_dssp EEEEEET---------TCSEEEEEETTT--TEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEEC--TTT---CCEEE
T ss_pred EEEEEEe---------cCCEEEEEECCC--CcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEE--CCC---CcEEE
Confidence 4555552 347888887654 4445555444 444567765667887776 4555544 211 12211
Q ss_pred hccc--ccce--EEEEEEEeCCEEEEEeccccEEEEEEEccCCe
Q 004094 547 ECGH--HGHI--LALYVQTRGDFIVVGDLMKSISLLIYKHEEGA 586 (774)
Q Consensus 547 ~~~~--~~~~--~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~ 586 (774)
.... .... .+..+...+.++++...... .+...+...++
T Consensus 141 ~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~-~V~vID~~tg~ 183 (266)
T 2iwa_A 141 KHNVKYNGHRVIRLNELEYINGEVWANIWQTD-CIARISAKDGT 183 (266)
T ss_dssp EEECEETTEECCCEEEEEEETTEEEEEETTSS-EEEEEETTTCC
T ss_pred EEEECCCCcccccceeEEEECCEEEEecCCCC-eEEEEECCCCc
Confidence 1110 0011 12334444668887775544 34456765554
No 159
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=92.27 E-value=1.4 Score=48.90 Aligned_cols=109 Identities=8% Similarity=0.100 Sum_probs=71.3
Q ss_pred cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCce-------EEEEEECCC---CceEEEEEEEEEcCCCceE
Q 004094 400 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFE-------FISTYPLDT---FEYGCSILSCSFSDDSNVY 469 (774)
Q Consensus 400 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~-------~i~~~~~~~---~E~~~si~~~~~~~~~~~~ 469 (774)
..+.++|+|+.+.+++++.+. .|++.|..+.. .+.++.... ...|.+++ +..++
T Consensus 131 sv~svafSPDG~~LAsgs~DG----------tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVa---wSPdg--- 194 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGNEDG----------ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIV---WYEDV--- 194 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTS----------EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEE---EETTE---
T ss_pred cEEEEEEcCCCCEEEEEcCCC----------EEEEEECCCCccccccceeeeeeecccccccccEEEEE---EcCCc---
Confidence 467899999999998887653 79999987654 345554222 23455553 44433
Q ss_pred EEEEeeeeCCCCCCCcceEEEEEEEeCCeEE-EEEEE--eecCceeEeccccCeEEEEECCEEEEEEe
Q 004094 470 YCVGTAYVLPEENEPTKGRILVFIVEDGKLQ-LIAEK--ETKGAVYSLNAFNGKLLAAINQKIQLYKW 534 (774)
Q Consensus 470 i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~-~~~~~--~~~g~v~~i~~~~~~lv~~~g~~l~v~~~ 534 (774)
+++|.. .+.+++|++..+++. ..... .....|.+++-.++.|+++.+++|++|+.
T Consensus 195 Laass~----------D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~~~tIkLWd~ 252 (588)
T 2j04_A 195 LVAALS----------NNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTCPGYVHKIDL 252 (588)
T ss_dssp EEEEET----------TCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEECSSEEEEEET
T ss_pred EEEEeC----------CCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEeCCeEEEEEC
Confidence 555542 368899998866642 12221 34577888875555677777889999875
No 160
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=92.16 E-value=2.2 Score=47.31 Aligned_cols=216 Identities=9% Similarity=0.067 Sum_probs=113.5
Q ss_pred CCeEEEEEEcCCCC-eE-EEEEeC-CCcccEEEEecC------CCEEEEEEeccCCCCCceeeeEEEEEECCCceEE---
Q 004094 376 EGELTIGTIDDIQK-LH-IRSIPL-GEHPRRICHQEQ------SRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFI--- 443 (774)
Q Consensus 376 ~~~l~i~~l~~~~~-~~-~~~i~l-~~tp~~i~y~~~------~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i--- 443 (774)
++.++|..++.... .. ...+.- ...+..++++|. .+.++.++.+ +.|++.|..+.+..
T Consensus 182 D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~D----------gtvrlWd~~~~~~~~~~ 251 (524)
T 2j04_B 182 SSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQE----------GTINFLEIIDNATDVHV 251 (524)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETT----------SCEEEEECCCCSSSSSE
T ss_pred CceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecC----------CeEEEEEcCCCcccccc
Confidence 56677777765431 11 112222 245778999986 3455545543 36888887543210
Q ss_pred ------EEEECCCC-ceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEec-
Q 004094 444 ------STYPLDTF-EYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLN- 515 (774)
Q Consensus 444 ------~~~~~~~~-E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~- 515 (774)
....+..+ ..+.|+. +..+ ..|+.|+ ..|.|.+|++..++.....-..+.++|++|+
T Consensus 252 ~~~~~~p~~~l~~h~~~v~sv~---~s~~--~~lasgs----------~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~ 316 (524)
T 2j04_B 252 FKMCEKPSLTLSLADSLITTFD---FLSP--TTVVCGF----------KNGFVAEFDLTDPEVPSFYDQVHDSYILSVST 316 (524)
T ss_dssp EECCCSCSEEECCTTTCEEEEE---ESSS--SEEEEEE----------TTSEEEEEETTBCSSCSEEEECSSSCEEEEEE
T ss_pred ceeecCceEEEEcCCCCEEEEE---ecCC--CeEEEEe----------CCCEEEEEECCCCCCceEEeecccccEEEEEE
Confidence 01122222 3344443 4332 4688776 3489999998744221111234678999994
Q ss_pred cc--cC-eEEEEE--CCEEEEEEeeecCCCchhhhhh-ccc-c-cceEEEEEEEeCCEEEEEeccccEEEEEEEccCCe-
Q 004094 516 AF--NG-KLLAAI--NQKIQLYKWMLRDDGTRELQSE-CGH-H-GHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA- 586 (774)
Q Consensus 516 ~~--~~-~lv~~~--g~~l~v~~~~~~~~~~~~l~~~-~~~-~-~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~- 586 (774)
.+ ++ .++++. .++|++|++. .+ +.... ... . ..+..+...-.+..++.|+..+.|.++ +.....
T Consensus 317 ~~s~~g~~~laS~S~D~tvklWD~~---~~--~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lw--d~~~~~~ 389 (524)
T 2j04_B 317 AYSDFEDTVVSTVAVDGYFYIFNPK---DI--ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAV--PSRAAFA 389 (524)
T ss_dssp ECCTTSCCEEEEEETTSEEEEECGG---GH--HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEE--ETTCTTC
T ss_pred EcCCCCCeEEEEeccCCeEEEEECC---CC--CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEE--ECccccc
Confidence 34 34 565544 4789997742 11 11111 000 1 012223333346678888887777764 433222
Q ss_pred EEEEeccCCcceeEEEEEeeCC-eEEEEccCCcEEEEeeC
Q 004094 587 IEERARDYNANWMSAVEILDDD-IYLGAENNFNLFTVRKN 625 (774)
Q Consensus 587 l~~~a~D~~~~~v~~~~~l~~~-~~l~~D~~gnl~~l~~~ 625 (774)
+..+.. +...|+++.|-.++ .++.+..+|.+.++...
T Consensus 390 ~~~l~g--H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 390 VHPLVS--RETTITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp CEEEEE--CSSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred ceeeec--CCCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 222221 34567777764444 35667788988887653
No 161
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=91.92 E-value=10 Score=37.30 Aligned_cols=198 Identities=12% Similarity=0.072 Sum_probs=97.3
Q ss_pred EEEEeC---CCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCC-ceEEEEEEEEEcCCCc
Q 004094 392 IRSIPL---GEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF-EYGCSILSCSFSDDSN 467 (774)
Q Consensus 392 ~~~i~l---~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~-E~~~si~~~~~~~~~~ 467 (774)
.+.+++ ...|+.++..++.+.++..... ..|..+|+. .+. ..+.++.. ..+.++. +..++
T Consensus 10 ~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~----------~~v~~~~~~-~~~-~~~~~~~~~~~~~~i~---~~~~g- 73 (300)
T 2qc5_A 10 LEEFNLSIPDSGPYGITSSEDGKVWFTQHKA----------NKISSLDQS-GRI-KEFEVPTPDAKVMCLI---VSSLG- 73 (300)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTT----------TEEEEECTT-SCE-EEEECSSTTCCEEEEE---ECTTS-
T ss_pred EEEEecCCCCCCcceeeECCCCCEEEEcCCC----------CeEEEECCC-Cce-EEEECCCCCCcceeEE---ECCCC-
Confidence 444555 3478899999887766643222 368888886 433 33444432 3444443 33322
Q ss_pred eEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEEEE--CCEEEEEEeeecCCCchhh
Q 004094 468 VYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQLYKWMLRDDGTREL 544 (774)
Q Consensus 468 ~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~~--g~~l~v~~~~~~~~~~~~l 544 (774)
. +.|++. ..|+|+.|+.. ++++..........+.+++.- +|.|+++. ++.|+.++. .++ +
T Consensus 74 ~-l~v~~~---------~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~----~g~--~ 136 (300)
T 2qc5_A 74 D-IWFTEN---------GANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTA----DGT--I 136 (300)
T ss_dssp C-EEEEET---------TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT----TSC--E
T ss_pred C-EEEEec---------CCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECC----CCC--E
Confidence 2 444442 23678777655 454322111112456677654 57787776 456665542 122 1
Q ss_pred hhhcccccceEEEEEEEe-CCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccC-CcEEEE
Q 004094 545 QSECGHHGHILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENN-FNLFTV 622 (774)
Q Consensus 545 ~~~~~~~~~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~-gnl~~l 622 (774)
.....-.....+..+... ++.++++|...+- +++|+. .+++..+..........++.+-.++.+.+++.. +.+..+
T Consensus 137 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 214 (300)
T 2qc5_A 137 YEYDLPNKGSYPAFITLGSDNALWFTENQNNS-IGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRI 214 (300)
T ss_dssp EEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEccCCCCCCCceeEEECCCCCEEEEecCCCe-EEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence 111000011234445443 2358888875442 456776 445544432222223334333224456566554 345555
Q ss_pred ee
Q 004094 623 RK 624 (774)
Q Consensus 623 ~~ 624 (774)
..
T Consensus 215 ~~ 216 (300)
T 2qc5_A 215 TT 216 (300)
T ss_dssp CT
T ss_pred cC
Confidence 43
No 162
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=91.71 E-value=14 Score=38.22 Aligned_cols=61 Identities=10% Similarity=0.025 Sum_probs=37.7
Q ss_pred CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEEC
Q 004094 184 ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL 251 (774)
Q Consensus 184 ~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l 251 (774)
+..++-...++.+...++..+++...-.-..+..+++++++| ...+++-|.+ |++|+||++
T Consensus 295 g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP------DG~~LaSGS~-D~TIklWd~ 355 (356)
T 2w18_A 295 DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG------TDSHLLAGQK-DGNIFVYHY 355 (356)
T ss_dssp TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS------SSSEEEEECT-TSCEEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC------CCCEEEEEEC-CCcEEEecC
Confidence 334444445778888888776544321111222345788875 2567888887 999999985
No 163
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=90.99 E-value=8.9 Score=38.09 Aligned_cols=204 Identities=13% Similarity=0.086 Sum_probs=93.7
Q ss_pred CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEE----Ee
Q 004094 399 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCV----GT 474 (774)
Q Consensus 399 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~V----GT 474 (774)
..|..++++++.+.++. ... ...|..+|+.+.+..................+.+..++ .+++. ||
T Consensus 69 ~~~~~l~~~~dg~l~v~-~~~---------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~ 137 (296)
T 3e5z_A 69 HHQNGHCLNKQGHLIAC-SHG---------LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGI 137 (296)
T ss_dssp SSEEEEEECTTCCEEEE-ETT---------TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHH
T ss_pred CCcceeeECCCCcEEEE-ecC---------CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCcccc
Confidence 45788999988875543 322 13688888866554322111111111111112233333 34443 44
Q ss_pred eeeC---CCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEEEE--CCEEEEEEeeecCCCch-hhhhh
Q 004094 475 AYVL---PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQLYKWMLRDDGTR-ELQSE 547 (774)
Q Consensus 475 ~~~~---~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~~--g~~l~v~~~~~~~~~~~-~l~~~ 547 (774)
.... ..+.....|+|+.|+.. ++++.+. .....+..++-- +++++++. ++.|++|+++ .++.. .-...
T Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~--~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~--~~g~~~~~~~~ 212 (296)
T 3e5z_A 138 DKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI--RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLN--ARGETEYQGVH 212 (296)
T ss_dssp HCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE--CCCSSEEEEEECTTSCEEEEETTTTEEEEEEEC--SSSCEEEEEEE
T ss_pred ccccccccccccCCCcEEEEECCC-CCEEEee--cCCCCCccEEECCCCCEEEEeCCCCeEEEEEEC--CCCcCcCCCeE
Confidence 2100 01122335677777654 5555442 223445566543 45544444 2578887764 12221 00001
Q ss_pred c-ccccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEee-CC-eEEEEccCCcEEEEee
Q 004094 548 C-GHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD-DD-IYLGAENNFNLFTVRK 624 (774)
Q Consensus 548 ~-~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~-~~-~~l~~D~~gnl~~l~~ 624 (774)
. .....+..+.+...| .|++++ -.+| .+|+++...+..+... .. ++++.|-. +. .+.++. .+.++.++.
T Consensus 213 ~~~~~~~p~~i~~d~~G-~l~v~~-~~~v--~~~~~~g~~~~~~~~~-~~--~~~~~f~~~d~~~L~v~t-~~~l~~~~~ 284 (296)
T 3e5z_A 213 FTVEPGKTDGLRVDAGG-LIWASA-GDGV--HVLTPDGDELGRVLTP-QT--TSNLCFGGPEGRTLYMTV-STEFWSIET 284 (296)
T ss_dssp ECCSSSCCCSEEEBTTS-CEEEEE-TTEE--EEECTTSCEEEEEECS-SC--CCEEEEESTTSCEEEEEE-TTEEEEEEC
T ss_pred eeCCCCCCCeEEECCCC-CEEEEc-CCeE--EEECCCCCEEEEEECC-CC--ceeEEEECCCCCEEEEEc-CCeEEEEEc
Confidence 0 011112223333344 578888 5554 5678775555444322 22 55565543 32 344443 356776666
Q ss_pred CC
Q 004094 625 NS 626 (774)
Q Consensus 625 ~~ 626 (774)
..
T Consensus 285 ~~ 286 (296)
T 3e5z_A 285 NV 286 (296)
T ss_dssp SC
T ss_pred cc
Confidence 44
No 164
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=89.66 E-value=16 Score=35.75 Aligned_cols=191 Identities=10% Similarity=-0.048 Sum_probs=94.1
Q ss_pred CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC-CCceEEEEEEEEEcCCCceEEEEEeeee
Q 004094 399 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD-TFEYGCSILSCSFSDDSNVYYCVGTAYV 477 (774)
Q Consensus 399 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~-~~E~~~si~~~~~~~~~~~~i~VGT~~~ 477 (774)
..|..++.+++.+.++..... ..|..+|+. .+ +..+.++ ....+.++. +..++ .+.|++.
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~----------~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~---~~~~g--~l~v~~~-- 117 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAA----------NKIGRITKK-GI-IKEYTLPNPDSAPYGIT---EGPNG--DIWFTEM-- 117 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTT----------TEEEEECTT-SC-EEEEECSSTTCCEEEEE---ECTTS--CEEEEET--
T ss_pred CceeeEEECCCCCEEEeCCCC----------CeEEEECCC-Cc-EEEEeCCCcCCCceeeE---ECCCC--CEEEEec--
Confidence 568888888877755543211 257777775 22 3344443 344455543 33222 3444432
Q ss_pred CCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEEEE--CCEEEEEEeeecCCCchhhhhhcccccce
Q 004094 478 LPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQLYKWMLRDDGTRELQSECGHHGHI 554 (774)
Q Consensus 478 ~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~~--g~~l~v~~~~~~~~~~~~l~~~~~~~~~~ 554 (774)
..|+|+.|+. +++++..........+.+++.- +|.++++. ++.|+.++. +++ +..........
T Consensus 118 -------~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~----~g~--~~~~~~~~~~~ 183 (299)
T 2z2n_A 118 -------NGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE----SGD--ITEFKIPTPAS 183 (299)
T ss_dssp -------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT----TCC--EEEEECSSTTC
T ss_pred -------CCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC----CCc--EEEeeCCCCCC
Confidence 2367777766 4455433211123456777655 56787766 356766542 221 21110001112
Q ss_pred EEEEEEEe-CCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEc-cCCcEEEEee
Q 004094 555 LALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAE-NNFNLFTVRK 624 (774)
Q Consensus 555 ~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D-~~gnl~~l~~ 624 (774)
.+..+... ++.+++++...+ .+.+|+. .+++...........+.++.+-.++.+.+++ ..+.|..+..
T Consensus 184 ~~~~i~~~~~g~l~v~~~~~~-~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 184 GPVGITKGNDDALWFVEIIGN-KIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp CEEEEEECTTSSEEEEETTTT-EEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred cceeEEECCCCCEEEEccCCc-eEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 24445443 245888886544 2456777 5555443222122334444333344565665 3466666654
No 165
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=88.51 E-value=29 Score=37.09 Aligned_cols=146 Identities=13% Similarity=0.104 Sum_probs=81.9
Q ss_pred cCcEEEEecCCCceeeeEeCC-CCCcEEEEEE--C--CCEEEEEE------cCCeEEEEEEcCceEEEEEeccC------
Q 004094 152 SGSVRLVSSTSRELRNEWKSP-PGYSVNVATA--N--ASQVLLAT------GGGHLVYLEIGDGILTEVKHAQL------ 214 (774)
Q Consensus 152 ~~~i~l~~~~~~~~~~~~~~~-~~~~I~~a~~--~--~~~lvv~~------~~~~~~~~~~~~~~l~~~~~~~l------ 214 (774)
.+.|.+++.++++.++.+... .|..-..... + +..+.|+. -++.+..+..+++++.......+
T Consensus 227 ~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~ 306 (462)
T 2ece_A 227 GNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLE 306 (462)
T ss_dssp CCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECC
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccc
Confidence 477888887766666666653 2222222222 3 33444443 24466555655555433221111
Q ss_pred -------------CceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCC---CCeeEEecCCCc-------------
Q 004094 215 -------------EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD---LNLITKEHLGGE------------- 265 (774)
Q Consensus 215 -------------~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~---~~~~~~~~l~~~------------- 265 (774)
...++.+.+++ ...++.|+.|..+.|.+|++.+ ++++........
T Consensus 307 ~~lp~~~~~f~~~~~~pa~I~lS~------DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ 380 (462)
T 2ece_A 307 GNLPEILKPFKAVPPLVTDIDISL------DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLT 380 (462)
T ss_dssp SSCCGGGGGGTEECCCCCCEEECT------TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCC
T ss_pred ccccccccccccCCCceeEEEECC------CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCC
Confidence 12345566643 2688999999999999999853 344433333211
Q ss_pred cCceeEEeeeecCeeEEEEEe--------------CCCcEEEEEEecCCCccccc
Q 004094 266 IIPRSVLLCAFEGISYLLCAL--------------GDGHLLNFLLNMKTGELTDR 306 (774)
Q Consensus 266 ~~p~si~~~~~~~~~~L~vgl--------------~~G~l~~y~~~~~~~~l~~~ 306 (774)
.-|+.+.+.. +..+|++.. .++.++..++|+.+| |+..
T Consensus 381 ggPr~~~lSp--DGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G-L~~~ 432 (462)
T 2ece_A 381 GAPQMLEISR--DGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG-LEID 432 (462)
T ss_dssp SCCCCEEECT--TSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC-EEEE
T ss_pred CCCCEEEEcC--CCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC-ceeC
Confidence 1478877654 345788877 345555567788777 7643
No 166
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=88.37 E-value=26 Score=36.43 Aligned_cols=57 Identities=9% Similarity=0.073 Sum_probs=42.7
Q ss_pred EEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEE
Q 004094 381 IGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIST 445 (774)
Q Consensus 381 i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~ 445 (774)
+..++....-.+++|+++..|..++++++.+..++++... ...|.++|..+++.+.+
T Consensus 300 V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~--------~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 300 VTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAG--------TEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCC--------CCeEEEEECCCCCEEee
Confidence 4455555455679999999999999999998444444321 24799999999998876
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=88.29 E-value=25 Score=36.20 Aligned_cols=262 Identities=8% Similarity=0.008 Sum_probs=132.2
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEe---------cCCEEEEEECCCCCeeEEecCCC-----ccCceeEEeeeecC
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMW---------TDISVRIFSLPDLNLITKEHLGG-----EIIPRSVLLCAFEG 278 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~---------~~~~i~i~~l~~~~~~~~~~l~~-----~~~p~si~~~~~~~ 278 (774)
+..... .+++++ ...+++++.+ .++.|.+|++.+++.+....+.. ...|+.+.+.+ +
T Consensus 48 ~~g~~p-~i~~sp------dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp--d 118 (361)
T 2oiz_A 48 PTAFNG-HVQVSN------DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT--D 118 (361)
T ss_dssp ECCEEE-EEEECT------TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT--T
T ss_pred cCCCCC-ceEECC------CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC--C
Confidence 334445 778865 2467777764 25689999998887765544321 13577776653 3
Q ss_pred eeEEEEEeC--CCcEEEEEEecCCCcccccee-eecCCC-CeEEEEEEeCCcceEE-EecCCCeEEEec--CCcEEEeee
Q 004094 279 ISYLLCALG--DGHLLNFLLNMKTGELTDRKK-VSLGTQ-PITLRTFSSKNTTHVF-AASDRPTVIYSS--NKKLLYSNV 351 (774)
Q Consensus 279 ~~~L~vgl~--~G~l~~y~~~~~~~~l~~~~~-~~lG~~-pv~l~~~~~~~~~~v~-~~~~~p~~l~~~--~~~~~~~~~ 351 (774)
..+|+++-. ++.+.+|.... +.+ .+. +..+.. ++.+.| .+....+ ++.+.....+.. .+++.-..
T Consensus 119 g~~l~v~n~~~~~~v~v~d~~~--~~~--~~~~i~~~~~~~v~~~p---~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~- 190 (361)
T 2oiz_A 119 GKFIVLQNASPATSIGIVDVAK--GDY--VEDVTAAAGCWSVIPQP---NRPRSFMTICGDGGLLTINLGEDGKVASQS- 190 (361)
T ss_dssp SSEEEEEEESSSEEEEEEETTT--TEE--EEEEGGGTTEEEEEECT---TSSSEEEEEETTSSEEEEEECTTSSEEEEE-
T ss_pred CCEEEEECCCCCCeEEEEECCC--CcE--EEEEecCCCcceeEEcC---CCCeeEEEECCCCcEEEEEECCCCcEeeec-
Confidence 457787653 56777775442 321 122 222221 111111 1111222 223333322221 23322000
Q ss_pred cccCceeeecccCC---------CCCCcEEEEe-CCeEEEEEEcCCCCeEEEEEeCCC--------c---ccEEEEecCC
Q 004094 352 NLKEVSHMCPFNSA---------AFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLGE--------H---PRRICHQEQS 410 (774)
Q Consensus 352 ~~~~i~~~~~f~~~---------~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~--------t---p~~i~y~~~~ 410 (774)
. ....|+.. ...+.+++.+ ++.+.+..+........+.+++.. . ++.++++++.
T Consensus 191 ~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg 265 (361)
T 2oiz_A 191 R-----SKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS 265 (361)
T ss_dssp E-----CCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTT
T ss_pred c-----ccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCC
Confidence 0 00001100 0012344444 455555555433322333333321 2 3348899987
Q ss_pred CEEEEEEeccCCCC-CceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEE
Q 004094 411 RTFAICSLKNQSCA-EESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRI 489 (774)
Q Consensus 411 ~~~~v~~~~~~~~~-~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl 489 (774)
+.+.|+...+...+ .......+.++|..+.+.+.++.... +.++. +..+++ +++++. . |.|
T Consensus 266 ~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~ia---~spdg~-~l~v~n----------~-~~v 327 (361)
T 2oiz_A 266 GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSMT---IDQQRN-LMLTLD----------G-GNV 327 (361)
T ss_dssp TEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEEE---EETTTT-EEEEEC----------S-SCE
T ss_pred CeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEEE---ECCCCC-EEEEeC----------C-CeE
Confidence 77777664210000 00123479999999999999988765 55553 555555 555442 1 789
Q ss_pred EEEEEeCCeEEEEEEE-eecCceeEe
Q 004094 490 LVFIVEDGKLQLIAEK-ETKGAVYSL 514 (774)
Q Consensus 490 ~v~~i~~~kl~~~~~~-~~~g~v~~i 514 (774)
.+|+...++|+++... .+-..+..+
T Consensus 328 ~v~D~~t~~l~~~~~i~~~G~~P~~~ 353 (361)
T 2oiz_A 328 NVYDISQPEPKLLRTIEGAAEASLQV 353 (361)
T ss_dssp EEEECSSSSCEEEEEETTSCSSEEEE
T ss_pred EEEECCCCcceeeEEeccCCCCcEEE
Confidence 9998888767777664 343344444
No 168
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=88.02 E-value=21 Score=35.00 Aligned_cols=165 Identities=13% Similarity=0.076 Sum_probs=97.5
Q ss_pred EEEEEeCCCcc--cEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCce
Q 004094 391 HIRSIPLGEHP--RRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468 (774)
Q Consensus 391 ~~~~i~l~~tp--~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~ 468 (774)
.++.+|-+..| +-+.|+. +.+.+.+... ..+.|+.+|+.+.+++.+..+++.-....+... +.
T Consensus 33 vv~~~phd~~~ftqGL~~~~--~~LyestG~~-------g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~-----g~- 97 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYRN--GYFYESTGLN-------GRSSIRKVDIESGKTLQQIELGKRYFGEGISDW-----KD- 97 (262)
T ss_dssp EEEEEECCTTCEEEEEEEET--TEEEEEEEET-------TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE-----TT-
T ss_pred EEEEecCCCCcccceEEEEC--CEEEEECCCC-------CCceEEEEECCCCcEEEEEecCCccceeEEEEe-----CC-
Confidence 46677887777 7788883 4555555432 357999999999999999998765444444332 22
Q ss_pred EEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEEC-CEEEEEEeeecCCCchhhhhh
Q 004094 469 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSE 547 (774)
Q Consensus 469 ~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g-~~l~v~~~~~~~~~~~~l~~~ 547 (774)
.+.+.|- ..+++++|+.. .++++......+.-.+++.-++.|+++-| ++|++++ ... .+..+.
T Consensus 98 ~ly~ltw---------~~~~v~v~D~~--t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iD--p~T---~~v~~~ 161 (262)
T 3nol_A 98 KIVGLTW---------KNGLGFVWNIR--NLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLD--PES---LTPVRT 161 (262)
T ss_dssp EEEEEES---------SSSEEEEEETT--TCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEEC--TTT---CSEEEE
T ss_pred EEEEEEe---------eCCEEEEEECc--cCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEc--CCC---CeEEEE
Confidence 3444442 34788888764 35556666665544577765677888876 4565543 221 122211
Q ss_pred ccc--ccce--EEEEEEEeCCEEEEEeccccEEEEEEEccCCeE
Q 004094 548 CGH--HGHI--LALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 587 (774)
Q Consensus 548 ~~~--~~~~--~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l 587 (774)
... .... .+..+.+.+.+|++..-+.. .+++.++..++.
T Consensus 162 I~V~~~g~~~~~lNELe~~~G~lyan~w~~~-~I~vIDp~tG~V 204 (262)
T 3nol_A 162 ITVTAHGEELPELNELEWVDGEIFANVWQTN-KIVRIDPETGKV 204 (262)
T ss_dssp EECEETTEECCCEEEEEEETTEEEEEETTSS-EEEEECTTTCBE
T ss_pred EEeccCCccccccceeEEECCEEEEEEccCC-eEEEEECCCCcE
Confidence 110 1111 12235556778888886555 355667766554
No 169
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=87.99 E-value=28 Score=36.28 Aligned_cols=109 Identities=15% Similarity=0.050 Sum_probs=63.7
Q ss_pred EEEEEEcCCeEEEEEEcCceEEEEEe----ccCCceeEEEEeCCCCC--CCCCcceEEEEEecCCEEEEEECCCCCeeE-
Q 004094 186 QVLLATGGGHLVYLEIGDGILTEVKH----AQLEYEISCLDINPIGE--NPSYSQIAAVGMWTDISVRIFSLPDLNLIT- 258 (774)
Q Consensus 186 ~lvv~~~~~~~~~~~~~~~~l~~~~~----~~l~~~is~l~~~~~~~--~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~- 258 (774)
.++.+..++.+..+....+....... .-....|.++++.+... ......+++-|.+ |++++||++.+...+.
T Consensus 103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~-D~tv~~Wd~~~~~~~~~ 181 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD-DCTLIIWRLTDEGPILA 181 (393)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET-TSEEEEEEEETTEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC-CCeEEEEECCCCceeee
Confidence 34444456777777766554432211 12457899999865321 0112456666666 9999999987644332
Q ss_pred EecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEec
Q 004094 259 KEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 259 ~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~ 298 (774)
..... ..+.++++.+- +..+|+.|..||.+..|.+..
T Consensus 182 ~~~~~--~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t 218 (393)
T 4gq1_A 182 GYPLS--SPGISVQFRPS-NPNQLIVGERNGNIRIFDWTL 218 (393)
T ss_dssp EEECS--SCEEEEEEETT-EEEEEEEEETTSEEEEEETTC
T ss_pred ecCCC--CCcEEEEECCC-CCceEEecCCCCEEEEEECCC
Confidence 22222 23345544431 235688999999999987643
No 170
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=87.91 E-value=21 Score=34.88 Aligned_cols=156 Identities=14% Similarity=0.052 Sum_probs=78.8
Q ss_pred CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC-CCceEEEEEEEEEcCCCceEEEEEeeee
Q 004094 399 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD-TFEYGCSILSCSFSDDSNVYYCVGTAYV 477 (774)
Q Consensus 399 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~-~~E~~~si~~~~~~~~~~~~i~VGT~~~ 477 (774)
..|..++++++.+.++..... ..|..+|+. .+.. .+.++ ....+.++. +..+++ +.|++.
T Consensus 104 ~~~~~i~~~~~g~l~v~~~~~----------~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~---~d~~g~--l~v~~~-- 164 (300)
T 2qc5_A 104 SGPYGITEGLNGDIWFTQLNG----------DRIGKLTAD-GTIY-EYDLPNKGSYPAFIT---LGSDNA--LWFTEN-- 164 (300)
T ss_dssp CCEEEEEECSTTCEEEEETTT----------TEEEEECTT-SCEE-EEECSSTTCCEEEEE---ECTTSS--EEEEET--
T ss_pred CCCccceECCCCCEEEEccCC----------CeEEEECCC-CCEE-EccCCCCCCCceeEE---ECCCCC--EEEEec--
Confidence 567888888877665543211 267777876 4433 34443 334455543 333333 555542
Q ss_pred CCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEEEE--CCEEEEEEeeecCCCchhhhhhcccccce
Q 004094 478 LPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQLYKWMLRDDGTRELQSECGHHGHI 554 (774)
Q Consensus 478 ~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~~--g~~l~v~~~~~~~~~~~~l~~~~~~~~~~ 554 (774)
..++|+.|+. ++++...........+.+++.- +|.|+++. ++.|.+++. .+. +.....-....
T Consensus 165 -------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~----~g~--~~~~~~~~~~~ 230 (300)
T 2qc5_A 165 -------QNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT----TGE--ISEYDIPTPNA 230 (300)
T ss_dssp -------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT----TCC--EEEEECSSTTC
T ss_pred -------CCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC----CCc--EEEEECCCCCC
Confidence 2367777766 4455432211112346666654 57788776 356776552 221 11110001112
Q ss_pred EEEEEEEe-CCEEEEEecc-ccEEEEEEEccCCeEEEE
Q 004094 555 LALYVQTR-GDFIVVGDLM-KSISLLIYKHEEGAIEER 590 (774)
Q Consensus 555 ~~~~l~~~-~~~I~vgD~~-~Sv~~~~~~~~~~~l~~~ 590 (774)
.+..+... ++.|+++|.. .++ .+|+.+ .++...
T Consensus 231 ~~~~i~~d~~g~l~v~~~~~~~i--~~~~~~-g~~~~~ 265 (300)
T 2qc5_A 231 RPHAITAGKNSEIWFTEWGANQI--GRITND-NTIQEY 265 (300)
T ss_dssp CEEEEEECSTTCEEEEETTTTEE--EEECTT-SCEEEE
T ss_pred CceEEEECCCCCEEEeccCCCeE--EEECCC-CcEEEE
Confidence 34455544 3368999976 444 457763 444433
No 171
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=87.52 E-value=24 Score=35.04 Aligned_cols=187 Identities=7% Similarity=-0.004 Sum_probs=94.4
Q ss_pred EEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCC---CceEEEEEEEEEcCCCceE
Q 004094 393 RSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDT---FEYGCSILSCSFSDDSNVY 469 (774)
Q Consensus 393 ~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~---~E~~~si~~~~~~~~~~~~ 469 (774)
+.+..+..|..++.+++.+ ++++. . ..|..+|+.+.+...-..... ...+..+ .+..+++
T Consensus 48 ~~~~~~~~~~~i~~~~dG~-l~v~~-~----------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di---~~d~dG~-- 110 (297)
T 3g4e_A 48 QRVTMDAPVSSVALRQSGG-YVATI-G----------TKFCALNWKEQSAVVLATVDNDKKNNRFNDG---KVDPAGR-- 110 (297)
T ss_dssp EEEECSSCEEEEEEBTTSS-EEEEE-T----------TEEEEEETTTTEEEEEEECCTTCSSEEEEEE---EECTTSC--
T ss_pred EEEeCCCceEEEEECCCCC-EEEEE-C----------CeEEEEECCCCcEEEEEecCCCCCCCCCCCE---EECCCCC--
Confidence 4456677888999999888 44443 2 268888987665432223222 2233433 3444443
Q ss_pred EEEEeeeeCC--CCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cC-eEEEEE--CCEEEEEEeeecCCCchh
Q 004094 470 YCVGTAYVLP--EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAI--NQKIQLYKWMLRDDGTRE 543 (774)
Q Consensus 470 i~VGT~~~~~--~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~-~lv~~~--g~~l~v~~~~~~~~~~~~ 543 (774)
+.+|+..... .......|+||.++. ++++..+... -..+..++-- ++ .|+++- .++|++|+++.. +|.
T Consensus 111 l~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~~~~~--~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~-~G~-- 184 (297)
T 3g4e_A 111 YFAGTMAEETAPAVLERHQGALYSLFP-DHHVKKYFDQ--VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ-TGQ-- 184 (297)
T ss_dssp EEEEEEECCSBTTBCCTTCEEEEEECT-TSCEEEEEEE--ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT-TCC--
T ss_pred EEEecCCcccccccccCCCcEEEEEEC-CCCEEEEeec--cccccceEEcCCCCEEEEecCCCCcEEEEeccCC-CCc--
Confidence 5667643210 011235577776654 3455443321 2233444433 34 465554 467888876421 231
Q ss_pred hhh---hcccc-cceEEEEEEEe-CCEEEEEeccccEEEEEEEccCCeE-EEEeccCCcceeEEEEEe
Q 004094 544 LQS---ECGHH-GHILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAI-EERARDYNANWMSAVEIL 605 (774)
Q Consensus 544 l~~---~~~~~-~~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l-~~~a~D~~~~~v~~~~~l 605 (774)
+.. ...+. ....+-.+.+. +..|++++...+- +.+|+++.+++ ..+. -+ ...++++.|-
T Consensus 185 ~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~tG~~~~~i~-~p-~~~~t~~~f~ 249 (297)
T 3g4e_A 185 ISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPVTGKRLQTVK-LP-VDKTTSCCFG 249 (297)
T ss_dssp EEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-EEEECTTTCCEEEEEE-CS-SSBEEEEEEE
T ss_pred ccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCCCceEEEEEE-CC-CCCceEEEEe
Confidence 211 11111 11233444443 2368888876653 56788874544 3332 22 2467777775
No 172
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=87.48 E-value=43 Score=37.91 Aligned_cols=238 Identities=11% Similarity=0.092 Sum_probs=121.6
Q ss_pred cEEEEeCCeEEEEEEcC-----CCCeEEEEEeCC-Cc---------------ccEEEEecCCCEEEEEEeccC-------
Q 004094 370 SLAIAKEGELTIGTIDD-----IQKLHIRSIPLG-EH---------------PRRICHQEQSRTFAICSLKNQ------- 421 (774)
Q Consensus 370 ~l~~~~~~~l~i~~l~~-----~~~~~~~~i~l~-~t---------------p~~i~y~~~~~~~~v~~~~~~------- 421 (774)
.++++.++.+.+..+.. ... +++... .. +..+.++|+.+.++.+..+..
T Consensus 134 ~la~~~~~~i~v~~~~~~~~~~g~~---~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~ 210 (706)
T 2z3z_A 134 RVAYVRNHNLYIARGGKLGEGMSRA---IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPI 210 (706)
T ss_dssp EEEEEETTEEEEEECBCTTSCCCCC---EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEE
T ss_pred EEEEEECCeEEEEecCcccccCCCc---EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEe
Confidence 47777889999998876 322 222222 22 478999999998888774321
Q ss_pred ----------------CCCCceeeeEEEEEECCCceEEEEEECC-CCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCC
Q 004094 422 ----------------SCAEESEMHFVRLLDDQTFEFISTYPLD-TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEP 484 (774)
Q Consensus 422 ----------------~~~~~~~~~~l~l~d~~~~~~i~~~~~~-~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~ 484 (774)
..++......|.++|..+.+........ ....+.+ +.+..+++ +++++... ...
T Consensus 211 ~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~~~spdg~-~l~~~~~~-----~~~ 281 (706)
T 2z3z_A 211 VDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN---LSWSPDEN-ILYVAEVN-----RAQ 281 (706)
T ss_dssp EECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE---EEECTTSS-EEEEEEEC-----TTS
T ss_pred eccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee---EEEECCCC-EEEEEEeC-----CCC
Confidence 0011123467889998877654322211 2233333 33444444 55555432 123
Q ss_pred cceEEEEEEEeCC-eEEEEEEEeecCc---eeEeccc---cCeEEEEEC--CEEEEEEeeecCCCchhhhhhcccccceE
Q 004094 485 TKGRILVFIVEDG-KLQLIAEKETKGA---VYSLNAF---NGKLLAAIN--QKIQLYKWMLRDDGTRELQSECGHHGHIL 555 (774)
Q Consensus 485 ~~Grl~v~~i~~~-kl~~~~~~~~~g~---v~~i~~~---~~~lv~~~g--~~l~v~~~~~~~~~~~~l~~~~~~~~~~~ 555 (774)
..+.|+++++..+ +++.+......+. +.+++-. +|+++++.+ ..+.+|.++. ++ ..+...........
T Consensus 282 ~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~--~~-~~~~~l~~~~~~v~ 358 (706)
T 2z3z_A 282 NECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT--TG-RLIRQVTKGEWEVT 358 (706)
T ss_dssp CEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEET--TS-CEEEECCCSSSCEE
T ss_pred CeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEEC--CC-CEEEecCCCCeEEE
Confidence 5678899988777 6666654433322 2333221 566555443 3466766642 12 11211111111111
Q ss_pred -EEEEEEeCCEEEEEecccc---EEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCe-EEE--EccC--CcEEEEeeC
Q 004094 556 -ALYVQTRGDFIVVGDLMKS---ISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI-YLG--AENN--FNLFTVRKN 625 (774)
Q Consensus 556 -~~~l~~~~~~I~vgD~~~S---v~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~-~l~--~D~~--gnl~~l~~~ 625 (774)
+...+-.+++|+++-..++ ..++.++.+..++..+.. ...+.++.+-.++. ++. ++.. +.+++++..
T Consensus 359 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 359 NFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTP---ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp EEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCC---SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred eeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccC---CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 1233335667776655553 677788876655555542 22344454443443 332 2222 447776653
No 173
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=86.83 E-value=52 Score=38.15 Aligned_cols=132 Identities=10% Similarity=-0.015 Sum_probs=67.3
Q ss_pred cceEEEEEEEeCCeEEEEEEEeecCceeEecc--ccCeEEEEE-C--CEEEEEEeeecCCCchhhhhhcccccceEEEEE
Q 004094 485 TKGRILVFIVEDGKLQLIAEKETKGAVYSLNA--FNGKLLAAI-N--QKIQLYKWMLRDDGTRELQSECGHHGHILALYV 559 (774)
Q Consensus 485 ~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~--~~~~lv~~~-g--~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l 559 (774)
..++|.+++......+.+....+. .+.+|+. .+|+|+++- | .+|....+ +|.....-...-...+..+.+
T Consensus 491 ~~~~I~v~~ldG~~~~~l~~~~l~-~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~----dG~~~~~lv~~~l~~P~GLav 565 (791)
T 3m0c_C 491 VLGTVSVADTKGVKRKTLFRENGS-KPRAIVVDPVHGFMYWTDWGTPAKIKKGGL----NGVDIYSLVTENIQWPNGITL 565 (791)
T ss_dssp TTTEEEEEETTSSSEEEEEECTTC-CEEEEEEETTTTEEEEEECSSSCEEEEEET----TSCCEEEEECSSCSCEEEEEE
T ss_pred CCCeEEEEeCCCCeEEEEEeCCCC-CcceEEEecCCCCEEEecCCCCCeEEEEec----CCCceEEEEeCCCCCceEEEE
Confidence 346777777654444444433322 3555554 468888775 3 46666554 232211111100012334445
Q ss_pred EEeCCEEEEEeccccEEEEEEEccCCeEEEEecc-CCcceeEEEEEeeCCeEEEEccC-CcEEEEe
Q 004094 560 QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARD-YNANWMSAVEILDDDIYLGAENN-FNLFTVR 623 (774)
Q Consensus 560 ~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D-~~~~~v~~~~~l~~~~~l~~D~~-gnl~~l~ 623 (774)
+..+++|+++|.... .+.+++.+......+... ..-.+..++.+ .++.+..+|.. +.|+.+.
T Consensus 566 D~~~~~LYwaD~~~~-~I~~~d~dG~~~~~v~~~~~~l~~P~glav-~~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 566 DLLSGRLYWVDSKLH-SISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp ETTTTEEEEEETTTT-EEEEEETTSCSCEEEEECTTTTSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred ecCCCeEEEEeCCCC-cEEEEecCCCceEEEecCCCccCCCCEEEE-eCCEEEEEECCCCEEEEEe
Confidence 555789999998765 345566654433333332 11223334443 56777788864 4455554
No 174
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=86.48 E-value=24 Score=39.05 Aligned_cols=132 Identities=8% Similarity=0.009 Sum_probs=74.2
Q ss_pred EEEEe---CCeEEEEEEcCCC----------CeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEEC
Q 004094 371 LAIAK---EGELTIGTIDDIQ----------KLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDD 437 (774)
Q Consensus 371 l~~~~---~~~l~i~~l~~~~----------~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~ 437 (774)
+++++ .+.+.+..+.+.. .-....+++|.-|+.++|+++.+.|+.+..+ +.+..+|-
T Consensus 290 ~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ld----------sqV~kwdi 359 (595)
T 1fwx_A 290 HLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLD----------SQVVKWNI 359 (595)
T ss_dssp EEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTT----------TEEEEEEH
T ss_pred EEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecC----------CcEEEEEh
Confidence 45544 4667777766432 2357789999999999999988555555433 24555555
Q ss_pred CC----------ceEEEEEECC--CCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCc----ceEEEEEEEeCCeEEE
Q 004094 438 QT----------FEFISTYPLD--TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPT----KGRILVFIVEDGKLQL 501 (774)
Q Consensus 438 ~~----------~~~i~~~~~~--~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~----~Grl~v~~i~~~kl~~ 501 (774)
.+ ++++++.... +++...++. ..+. ....++++...+.. +...+. --.-.+|+|..+++++
T Consensus 360 ~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g-~t~~-~DGk~l~~~Nk~sk-dr~~~~gp~~~~~~ql~dis~~~m~l 436 (595)
T 1fwx_A 360 EDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMG-ETLD-ATNDWLVCLSKFSK-DRFLNVGPLKPENDQLIDISGDKMVL 436 (595)
T ss_dssp HHHHHHHHTCSCCCEEEEEECSSCEEEEEETTT-TSTT-CCSSEEEEEESCCT-TSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred hHhhhhhcccccceeEEEeecccccccceeccc-eEeC-CCCCEEEEcCCCCc-cccccCCCCCCCcceEEEcCCCcEEE
Confidence 43 5677766553 222111110 0111 12456776665532 111000 0112778998889999
Q ss_pred EEEEeecCceeEec
Q 004094 502 IAEKETKGAVYSLN 515 (774)
Q Consensus 502 ~~~~~~~g~v~~i~ 515 (774)
++....-+.+....
T Consensus 437 v~d~p~~~ePh~~~ 450 (595)
T 1fwx_A 437 VHDGPTFAEPHDAI 450 (595)
T ss_dssp EEEEEESSCCCCEE
T ss_pred EEEEcCCCCCCceE
Confidence 99877655454444
No 175
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=86.28 E-value=4.7 Score=43.24 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=75.7
Q ss_pred EEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCc--------eEEEEEEC-C-CCceEEEEEEEE
Q 004094 392 IRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTF--------EFISTYPL-D-TFEYGCSILSCS 461 (774)
Q Consensus 392 ~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~--------~~i~~~~~-~-~~E~~~si~~~~ 461 (774)
..+++++..+..++++++.+.++|++... ..-..++++|..+. +.+..+.. . ....+.+++
T Consensus 86 ~~~~~~~~~v~~l~~spdg~~lav~~~sg------s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~--- 156 (434)
T 2oit_A 86 GLLVPMKFPIHHLALSCDNLTLSACMMSS------EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMK--- 156 (434)
T ss_dssp CEEECCSSCEEEEEECTTSCEEEEEEEET------TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEE---
T ss_pred cccccCCCcccEEEEcCCCCEEEEEEecc------CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEE---
Confidence 34577778899999999998888754211 01357888886443 22233332 2 234556554
Q ss_pred EcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cC-eEEEEEC-CEEEEEEe
Q 004094 462 FSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAIN-QKIQLYKW 534 (774)
Q Consensus 462 ~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~-~lv~~~g-~~l~v~~~ 534 (774)
+..+...+++.|+ ..|.+++|++..++. ......+.++|++++-- +| +|+++.. ++|++|+.
T Consensus 157 ~~p~~~~~las~s----------~Dg~v~iwD~~~~~~-~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~ 221 (434)
T 2oit_A 157 WNPTVPSMVAVCL----------ADGSIAVLQVTETVK-VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLP 221 (434)
T ss_dssp ECSSCTTEEEEEE----------TTSCEEEEEESSSEE-EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred ECCCCCCEEEEEE----------CCCeEEEEEcCCCcc-eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEcc
Confidence 4443467788776 348899999986633 22333457789988744 34 4655543 68888764
No 176
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=86.23 E-value=34 Score=35.52 Aligned_cols=263 Identities=9% Similarity=-0.013 Sum_probs=129.4
Q ss_pred cEEEEecCCCceeeeEeCCCCCcEEEEEE--CCCEEEEEEc----------CCeEEEEEEcCceEEEEEeccCC------
Q 004094 154 SVRLVSSTSRELRNEWKSPPGYSVNVATA--NASQVLLATG----------GGHLVYLEIGDGILTEVKHAQLE------ 215 (774)
Q Consensus 154 ~i~l~~~~~~~~~~~~~~~~~~~I~~a~~--~~~~lvv~~~----------~~~~~~~~~~~~~l~~~~~~~l~------ 215 (774)
.|.++|.++.+.+..+..... . .... ++..+.|+.. ++.+..+....++. +...++.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v--v~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP--IADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE--EEEEEETTSCSCC
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE--EEEEECCCccccc
Confidence 677899888777777654322 2 3443 3557777752 23454444333322 2222222
Q ss_pred --ceeEEEEeCCCCCCCCCcceEEEEEec-CCEEEE--EECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCc
Q 004094 216 --YEISCLDINPIGENPSYSQIAAVGMWT-DISVRI--FSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGH 290 (774)
Q Consensus 216 --~~is~l~~~~~~~~~~~~~~~~vg~~~-~~~i~i--~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~ 290 (774)
..+-.+++++ ...+++|+.+. ++.+.+ +++.+ +....++ ....+..-+... .+....||.
T Consensus 122 ~g~~P~~ia~Sp------DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-----~~~~~~p~g~~~-~~~~~~dg~ 186 (368)
T 1mda_H 122 VGPRVHIIGNCA------SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-----SCFHIHPGAAAT-HYLGSCPAS 186 (368)
T ss_dssp BSCCTTSEEECT------TSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-----SCCCCEEEETTE-EECCCCTTS
T ss_pred cCCCcceEEEcC------CCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-----CceEEccCCCeE-EEEEcCCCC
Confidence 2344566654 25678888774 456777 65544 2222222 111222222233 345667999
Q ss_pred EEEEEEecC---CCccccc--eeeecCCCCeEEEEEEeCCcceEEEecCCCeEEEecCCcEE-EeeecccC----ceeee
Q 004094 291 LLNFLLNMK---TGELTDR--KKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLL-YSNVNLKE----VSHMC 360 (774)
Q Consensus 291 l~~y~~~~~---~~~l~~~--~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~~~~~~-~~~~~~~~----i~~~~ 360 (774)
+..+.++.. .+++... ....+|..|. ... .+...+++....-+.+-...+... ...+.... .....
T Consensus 187 ~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~~~-~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~ 262 (368)
T 1mda_H 187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---QAN-YPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFR 262 (368)
T ss_dssp CEEEECCSSCCCCEECCCCSCTTSCBCSCCE---EET-TTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEE
T ss_pred EEEEECccccccCCeEEEEeeeeeeCCCCcc---ccc-cCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccc
Confidence 887665430 1222211 1245677775 221 222223333222222222111111 11111000 00111
Q ss_pred cccCC---CCCC--cEEEE-e-C--------CeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCC
Q 004094 361 PFNSA---AFPD--SLAIA-K-E--------GELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAE 425 (774)
Q Consensus 361 ~f~~~---~~~~--~l~~~-~-~--------~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~ 425 (774)
|.... ..++ .++++ . . +... -++....-.+++|+++..|..++++++.+.+++++...
T Consensus 263 p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~--ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~----- 335 (368)
T 1mda_H 263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS--SVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAG----- 335 (368)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE--EEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETT-----
T ss_pred cCcceeeEEcCCCCEEEEEeccccCcccccCCCEE--EEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCC-----
Confidence 11100 0112 23322 2 2 2343 55554445688999999999999999988666665410
Q ss_pred ceeeeEEEEEECCCceEEEEEECCC
Q 004094 426 ESEMHFVRLLDDQTFEFISTYPLDT 450 (774)
Q Consensus 426 ~~~~~~l~l~d~~~~~~i~~~~~~~ 450 (774)
...|.++|..+++.+.++....
T Consensus 336 ---~~~VsVID~~t~kvv~~I~vg~ 357 (368)
T 1mda_H 336 ---TEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp ---TTEEEEEESSSCEEEEECCCCS
T ss_pred ---CCeEEEEECCCCcEEEEEECCC
Confidence 1379999999999998876543
No 177
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=85.91 E-value=20 Score=35.63 Aligned_cols=164 Identities=12% Similarity=0.087 Sum_probs=83.7
Q ss_pred EEEEEECCC-----ceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE
Q 004094 431 FVRLLDDQT-----FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK 505 (774)
Q Consensus 431 ~l~l~d~~~-----~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~ 505 (774)
.+..+|+.+ |+.+.....+.... ++.. + +...+++|-... ......+++|+...++.+.+...
T Consensus 79 ~~~~~d~~~~~~~~W~~~~~~p~~r~~~--~~~~--~---~~~lyv~GG~~~-----~~~~~~~~~~d~~~~~W~~~~~~ 146 (301)
T 2vpj_A 79 SVECLDYTADEDGVWYSVAPMNVRRGLA--GATT--L---GDMIYVSGGFDG-----SRRHTSMERYDPNIDQWSMLGDM 146 (301)
T ss_dssp CEEEEETTCCTTCCCEEECCCSSCCBSC--EEEE--E---TTEEEEECCBCS-----SCBCCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEECCCCCCCeeEECCCCCCCccce--eEEE--E---CCEEEEEcccCC-----CcccceEEEEcCCCCeEEECCCC
Confidence 466677643 77664433222222 2222 2 245666665321 11245788998888888877654
Q ss_pred eecCceeEeccccCeEEEEEC-------CEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEE-Eec-----c
Q 004094 506 ETKGAVYSLNAFNGKLLAAIN-------QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVV-GDL-----M 572 (774)
Q Consensus 506 ~~~g~v~~i~~~~~~lv~~~g-------~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~v-gD~-----~ 572 (774)
...-.-.+.+.++++|++.-| +.+.+|+.. ..+ +.........-...++.+.+++|++ |-. .
T Consensus 147 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~---~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~ 221 (301)
T 2vpj_A 147 QTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPH---TGH--WTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHL 221 (301)
T ss_dssp SSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETT---TTE--EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBC
T ss_pred CCCcccceEEEECCEEEEECCCCCCcccceEEEEeCC---CCc--EEeCCCCCcccccceEEEECCEEEEEeCCCCCccc
Confidence 332223344556777766543 345555531 122 2222211111111223345665554 433 2
Q ss_pred ccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEE
Q 004094 573 KSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGA 613 (774)
Q Consensus 573 ~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~ 613 (774)
+. +..|+.+.++-..++.-+.++.-.++..+++..++.+
T Consensus 222 ~~--v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 260 (301)
T 2vpj_A 222 SS--VEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIA 260 (301)
T ss_dssp CC--EEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred ce--EEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEc
Confidence 33 4568888888888876677776555555543334443
No 178
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=84.99 E-value=29 Score=33.52 Aligned_cols=106 Identities=8% Similarity=-0.073 Sum_probs=54.2
Q ss_pred CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeC
Q 004094 399 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 478 (774)
Q Consensus 399 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~ 478 (774)
..+..+.++|+.+.+++.+... ....+..++..+.+. . .+...+. .+..+.+..+ ..++++++....
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~-------~~~~i~~~~~~~~~~-~--~~~~~~~--~~~~~~~s~d-g~~l~~~~~~~~ 239 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRT-------GQMQIWRVRVDGSSV-E--RITDSAY--GDWFPHPSPS-GDKVVFVSYDAD 239 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTT-------SSCEEEEEETTSSCE-E--ECCCCSE--EEEEEEECTT-SSEEEEEEEETT
T ss_pred CccccceECCCCCEEEEEecCC-------CCccEEEECCCCCCc-E--EEecCCc--ccCCeEECCC-CCEEEEEEcCCC
Confidence 3466788888888777665432 123455555443322 2 2333222 2222334443 455666654321
Q ss_pred CC-CCCCcceEEEEEEEeCCeEEEEEEE-eecCceeEeccc
Q 004094 479 PE-ENEPTKGRILVFIVEDGKLQLIAEK-ETKGAVYSLNAF 517 (774)
Q Consensus 479 ~~-e~~~~~Grl~v~~i~~~kl~~~~~~-~~~g~v~~i~~~ 517 (774)
.. ......++|++|++..++.+.+... ...+.+.+++--
T Consensus 240 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 280 (297)
T 2ojh_A 240 VFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWS 280 (297)
T ss_dssp CCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBC
T ss_pred CCcccccCceEEEEEecCCCCceeeeccCCCCcccccceEC
Confidence 00 0111447899998877666555433 446677766543
No 179
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=84.81 E-value=15 Score=38.52 Aligned_cols=132 Identities=14% Similarity=0.079 Sum_probs=75.3
Q ss_pred CeEEEEecCcEEEEecCCCc---------eeeeEeCCCCCcEEEEEECCCEEEEEEcCCeEEEEEEcC-ceEEEEEeccC
Q 004094 145 NQLVQVTSGSVRLVSSTSRE---------LRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGD-GILTEVKHAQL 214 (774)
Q Consensus 145 ~~~vQVT~~~i~l~~~~~~~---------~~~~~~~~~~~~I~~a~~~~~~lvv~~~~~~~~~~~~~~-~~l~~~~~~~l 214 (774)
+.++--.++++++.+.+..+ ....+..+... |.+.+.++..++++ .++.+..+++.+ ...... ..+
T Consensus 50 gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~~~~~--~~~ 125 (388)
T 1xip_A 50 SLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVS-TRNALYSLDLEELSEFRTV--TSF 125 (388)
T ss_dssp TEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEE-ESSEEEEEESSSTTCEEEE--EEC
T ss_pred CEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEE-cCCcEEEEEchhhhccCcc--cee
Confidence 45556666777776543211 00012222233 77766777788888 567888878765 211112 223
Q ss_pred CceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEE
Q 004094 215 EYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNF 294 (774)
Q Consensus 215 ~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y 294 (774)
...+.++...+ .+ +++++. +|.+.+|++.+..... +. ...++++..+. - +.+|..||.+..|
T Consensus 126 ~~~v~~i~~~~-------p~-~av~~~-dG~L~v~dl~~~~~~~---~~--~~Vs~v~WSpk---G-~~vg~~dg~i~~~ 187 (388)
T 1xip_A 126 EKPVFQLKNVN-------NT-LVILNS-VNDLSALDLRTKSTKQ---LA--QNVTSFDVTNS---Q-LAVLLKDRSFQSF 187 (388)
T ss_dssp SSCEEEEEECS-------SE-EEEEET-TSEEEEEETTTCCEEE---EE--ESEEEEEECSS---E-EEEEETTSCEEEE
T ss_pred ecceeeEEecC-------CC-EEEEEC-CCCEEEEEccCCcccc---cc--CCceEEEEcCC---c-eEEEEcCCcEEEE
Confidence 33455554321 22 666666 9999999998755432 11 12344444432 2 7889999999999
Q ss_pred EEec
Q 004094 295 LLNM 298 (774)
Q Consensus 295 ~~~~ 298 (774)
..+.
T Consensus 188 ~~~~ 191 (388)
T 1xip_A 188 AWRN 191 (388)
T ss_dssp EEET
T ss_pred cCCC
Confidence 6653
No 180
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=84.64 E-value=36 Score=36.18 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=49.4
Q ss_pred CcEEEEEECC---CEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEEC
Q 004094 175 YSVNVATANA---SQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSL 251 (774)
Q Consensus 175 ~~I~~a~~~~---~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l 251 (774)
..|.+.+.++ ..++.+..++.+..+.+..+... .........|.|+++.+ ...++++|.. +|.|.+|++
T Consensus 150 ~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~-~~~~~~~~~v~~v~wsp------dg~~lasgs~-dg~v~iwd~ 221 (434)
T 2oit_A 150 GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV-CATLPSTVAVTSVCWSP------KGKQLAVGKQ-NGTVVQYLP 221 (434)
T ss_dssp GSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE-EEEECGGGCEEEEEECT------TSSCEEEEET-TSCEEEECT
T ss_pred CceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce-eeccCCCCceeEEEEcC------CCCEEEEEcC-CCcEEEEcc
Confidence 4677777653 35666667788888888764321 12233457899999975 2577888887 999999998
Q ss_pred C
Q 004094 252 P 252 (774)
Q Consensus 252 ~ 252 (774)
.
T Consensus 222 ~ 222 (434)
T 2oit_A 222 T 222 (434)
T ss_dssp T
T ss_pred C
Confidence 7
No 181
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=83.85 E-value=10 Score=39.86 Aligned_cols=129 Identities=11% Similarity=0.151 Sum_probs=78.9
Q ss_pred cEEE-EeCCeEEEEEEcCCCC--------e-EEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCC
Q 004094 370 SLAI-AKEGELTIGTIDDIQK--------L-HIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQT 439 (774)
Q Consensus 370 ~l~~-~~~~~l~i~~l~~~~~--------~-~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~ 439 (774)
++++ +..+++.++.+....+ + ....+++.. +..++| +.+.++|+ .. +.|+++|..+
T Consensus 50 gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~----------~~l~v~dv~s 115 (388)
T 1xip_A 50 SLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TR----------NALYSLDLEE 115 (388)
T ss_dssp TEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ES----------SEEEEEESSS
T ss_pred CEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cC----------CcEEEEEchh
Confidence 4443 4467777777654431 1 235678888 999999 55666665 22 4799999866
Q ss_pred ceEEEE-EECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-
Q 004094 440 FEFIST-YPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF- 517 (774)
Q Consensus 440 ~~~i~~-~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~- 517 (774)
...... ..++. .+.++. ... .+ +++++ ..|.|++|++++++++. ....|+|+|=-
T Consensus 116 l~~~~~~~~~~~--~v~~i~---~~~--p~-~av~~----------~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSp 172 (388)
T 1xip_A 116 LSEFRTVTSFEK--PVFQLK---NVN--NT-LVILN----------SVNDLSALDLRTKSTKQ-----LAQNVTSFDVTN 172 (388)
T ss_dssp TTCEEEEEECSS--CEEEEE---ECS--SE-EEEEE----------TTSEEEEEETTTCCEEE-----EEESEEEEEECS
T ss_pred hhccCccceeec--ceeeEE---ecC--CC-EEEEE----------CCCCEEEEEccCCcccc-----ccCCceEEEEcC
Confidence 553332 23322 234433 221 22 66666 34999999998766643 34478888865
Q ss_pred cCeEEEEECCEEEEEEee
Q 004094 518 NGKLLAAINQKIQLYKWM 535 (774)
Q Consensus 518 ~~~lv~~~g~~l~v~~~~ 535 (774)
+|..+.+.++++.+|..+
T Consensus 173 kG~~vg~~dg~i~~~~~~ 190 (388)
T 1xip_A 173 SQLAVLLKDRSFQSFAWR 190 (388)
T ss_dssp SEEEEEETTSCEEEEEEE
T ss_pred CceEEEEcCCcEEEEcCC
Confidence 454455556889998764
No 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=83.83 E-value=58 Score=36.07 Aligned_cols=104 Identities=13% Similarity=0.215 Sum_probs=65.3
Q ss_pred cCcEEEEecCCCceeeeEeCCCCCcEEEEEEC--CCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCC
Q 004094 152 SGSVRLVSSTSRELRNEWKSPPGYSVNVATAN--ASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGEN 229 (774)
Q Consensus 152 ~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~~~--~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~ 229 (774)
.+.|.+++.++++.+..+. .|........+ +..+.++..++.+..+.+...+...+........+..+++++.+.
T Consensus 176 ~~~V~viD~~t~~v~~~i~--~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~- 252 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLD--TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEG- 252 (567)
T ss_dssp TTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTT-
T ss_pred CCeEEEEECCCCeEEEEEe--CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccC-
Confidence 3578888888766666654 34444444554 557788776777777776411222233445556677788852110
Q ss_pred CCCcceEEEEEecCCEEEEEECCCCCeeEE
Q 004094 230 PSYSQIAAVGMWTDISVRIFSLPDLNLITK 259 (774)
Q Consensus 230 ~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~ 259 (774)
....+++++.+.++.+.|++..+++++..
T Consensus 253 -pDGk~l~v~n~~~~~v~ViD~~t~~~~~~ 281 (567)
T 1qks_A 253 -WEDKYAIAGAYWPPQYVIMDGETLEPKKI 281 (567)
T ss_dssp -CTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred -CCCCEEEEEEccCCeEEEEECCCCcEEEE
Confidence 01567777777689999999888877654
No 183
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=83.82 E-value=46 Score=34.94 Aligned_cols=93 Identities=9% Similarity=-0.029 Sum_probs=53.6
Q ss_pred cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCC
Q 004094 400 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 479 (774)
Q Consensus 400 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~ 479 (774)
.+..++++|+.+.++++.... ....|.++|..+.+.. .+.....+.++ .+..+ ..+++.++...
T Consensus 312 ~~~~~~~spdG~~l~~~~~~~-------g~~~i~~~d~~~~~~~---~l~~~~~~~~~---~~spd-g~~l~~~s~~~-- 375 (415)
T 2hqs_A 312 QNQDADVSSDGKFMVMVSSNG-------GQQHIAKQDLATGGVQ---VLSSTFLDETP---SLAPN-GTMVIYSSSQG-- 375 (415)
T ss_dssp EEEEEEECTTSSEEEEEEECS-------SCEEEEEEETTTCCEE---ECCCSSSCEEE---EECTT-SSEEEEEEEET--
T ss_pred cccCeEECCCCCEEEEEECcC-------CceEEEEEECCCCCEE---EecCCCCcCCe---EEcCC-CCEEEEEEcCC--
Confidence 345678889888777666442 2357999999877653 34344344443 34443 34666665421
Q ss_pred CCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEec
Q 004094 480 EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLN 515 (774)
Q Consensus 480 ~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~ 515 (774)
.++.|+++++..+.++.+. ...|.|.+++
T Consensus 376 -----~~~~l~~~d~~g~~~~~l~--~~~~~v~~~~ 404 (415)
T 2hqs_A 376 -----MGSVLNLVSTDGRFKARLP--ATDGQVKFPA 404 (415)
T ss_dssp -----TEEEEEEEETTSCCEEECC--CSSSEEEEEE
T ss_pred -----CccEEEEEECCCCcEEEee--CCCCCCcCCc
Confidence 2458888887655554432 2345555544
No 184
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=83.33 E-value=72 Score=36.83 Aligned_cols=158 Identities=12% Similarity=0.123 Sum_probs=84.3
Q ss_pred cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEEC----CCCceEEEEEEEEEcCCCceEEEEEee
Q 004094 400 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPL----DTFEYGCSILSCSFSDDSNVYYCVGTA 475 (774)
Q Consensus 400 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~----~~~E~~~si~~~~~~~~~~~~i~VGT~ 475 (774)
.+..++.+++.+.+-+++.. ..|..+|+.+.+. ..+.. .++..+.++.. ++..-+.|||.
T Consensus 407 ~v~~i~~d~~g~~lWigt~~----------~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~-----d~~g~lwigt~ 470 (795)
T 4a2l_A 407 NIKAVYVDEKKSLVYIGTHA----------GGLSILHRNSGQV-ENFNQRNSQLVNENVYAILP-----DGEGNLWLGTL 470 (795)
T ss_dssp CEEEEEEETTTTEEEEEETT----------TEEEEEETTTCCE-EEECTTTSCCSCSCEEEEEE-----CSSSCEEEEES
T ss_pred cEEEEEEcCCCCEEEEEeCc----------CceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEE-----CCCCCEEEEec
Confidence 34455555555524444432 2577888876543 23322 12344555532 33455888883
Q ss_pred eeCCCCCCCcceEEEEEEEeCCeEEEEEEE----e-ecCceeEeccc-cCeEEEEECCEEEEEEeeecCCCchhhh---h
Q 004094 476 YVLPEENEPTKGRILVFIVEDGKLQLIAEK----E-TKGAVYSLNAF-NGKLLAAINQKIQLYKWMLRDDGTRELQ---S 546 (774)
Q Consensus 476 ~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~----~-~~g~v~~i~~~-~~~lv~~~g~~l~v~~~~~~~~~~~~l~---~ 546 (774)
+-|+.|+...++++..... . ....|+++..- +|.|.++..+-|+.|+.. .+...+. .
T Consensus 471 -----------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~---~~~~~~~~~~~ 536 (795)
T 4a2l_A 471 -----------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQE---GLDIQKASILP 536 (795)
T ss_dssp -----------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEESSCEEEEEEE---TTEEEECCCSC
T ss_pred -----------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeCCceEEEeCC---CCeEEEecCCC
Confidence 1366676555566544321 1 13568888765 678988887777776642 1111111 0
Q ss_pred hcccccceEEEEEEEe-CCEEEEEeccccEEEEEEEccCCeEEEEe
Q 004094 547 ECGHHGHILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEERA 591 (774)
Q Consensus 547 ~~~~~~~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a 591 (774)
.... ....+.++... ++.|++|+.. + +++|++..+++....
T Consensus 537 ~~~l-~~~~i~~i~~d~~g~lWigT~~-G--l~~~d~~~~~~~~~~ 578 (795)
T 4a2l_A 537 VSNV-TKLFTNCIYEASNGIIWVGTRE-G--FYCFNEKDKQIKRYN 578 (795)
T ss_dssp SCGG-GGSCEEEEEECTTSCEEEEESS-C--EEEEETTTTEEEEEC
T ss_pred CCCC-CCCeeEEEEECCCCCEEEEeCC-C--ceeECCCCCcEEEeC
Confidence 0001 11134455543 4578999875 6 467888777776654
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=83.00 E-value=40 Score=33.68 Aligned_cols=154 Identities=12% Similarity=0.012 Sum_probs=77.8
Q ss_pred cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCC
Q 004094 400 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 479 (774)
Q Consensus 400 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~ 479 (774)
.|..++++++.+.+++.... ..|..+|+.+.+..... ......+.++. +..++ . ++|++...
T Consensus 46 ~~~~~~~~~~g~l~~~~~~~----------~~i~~~d~~~~~~~~~~-~~~~~~~~~i~---~~~dg-~-l~v~~~~~-- 107 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDVFE----------GNIFKINPETKEIKRPF-VSHKANPAAIK---IHKDG-R-LFVCYLGD-- 107 (333)
T ss_dssp CEEEEEECTTSCEEEEETTT----------CEEEEECTTTCCEEEEE-ECSSSSEEEEE---ECTTS-C-EEEEECTT--
T ss_pred cccCcEECCCCCEEEEECCC----------CEEEEEeCCCCcEEEEe-eCCCCCcceEE---ECCCC-c-EEEEeCCC--
Confidence 46778888887755544322 37888898776544322 23345566654 33333 3 44454221
Q ss_pred CCCCCcceEEEEEEEeCCeEEEEEE-EeecCceeEeccc-cCeEEEEECC------EEEEEEeeecCCCchhhhhhcccc
Q 004094 480 EENEPTKGRILVFIVEDGKLQLIAE-KETKGAVYSLNAF-NGKLLAAINQ------KIQLYKWMLRDDGTRELQSECGHH 551 (774)
Q Consensus 480 ~e~~~~~Grl~v~~i~~~kl~~~~~-~~~~g~v~~i~~~-~~~lv~~~g~------~l~v~~~~~~~~~~~~l~~~~~~~ 551 (774)
....+.|++|+...++++.+.. ......+.+++.- +|.++++... .-.+|.++.. .+ ++.....
T Consensus 108 ---~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~-~~--~~~~~~~-- 179 (333)
T 2dg1_A 108 ---FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FR--TVTPIIQ-- 179 (333)
T ss_dssp ---SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SC--CEEEEEE--
T ss_pred ---CCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC-CC--EEEEeec--
Confidence 1123678888766555552221 1122356666544 5777776642 3455555421 11 2211111
Q ss_pred cceEEEEEEE--eCCEEEEEeccc-cEEEEE
Q 004094 552 GHILALYVQT--RGDFIVVGDLMK-SISLLI 579 (774)
Q Consensus 552 ~~~~~~~l~~--~~~~I~vgD~~~-Sv~~~~ 579 (774)
....+..+.. .+++++++|..+ .+.++.
T Consensus 180 ~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d 210 (333)
T 2dg1_A 180 NISVANGIALSTDEKVLWVTETTANRLHRIA 210 (333)
T ss_dssp EESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred CCCcccceEECCCCCEEEEEeCCCCeEEEEE
Confidence 1111233433 456888888654 454443
No 186
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=82.55 E-value=49 Score=34.31 Aligned_cols=65 Identities=17% Similarity=0.116 Sum_probs=41.5
Q ss_pred cceEEEEEecCCEEEEEECCCCCeeEEec---CCC-ccCceeEEeeeec------CeeEEEEEeCCCcEEEEEEec
Q 004094 233 SQIAAVGMWTDISVRIFSLPDLNLITKEH---LGG-EIIPRSVLLCAFE------GISYLLCALGDGHLLNFLLNM 298 (774)
Q Consensus 233 ~~~~~vg~~~~~~i~i~~l~~~~~~~~~~---l~~-~~~p~si~~~~~~------~~~~L~vgl~~G~l~~y~~~~ 298 (774)
..+++.|.. |++++||++...+...... +.. .....++.+.+.. +..+|..|..|+.+..|.+..
T Consensus 101 ~~~las~~~-d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 101 SLFLACVCQ-DNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp EEEEEEEET-TSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred CCEEEEEeC-CCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 456777777 9999999987654433222 221 1234556554321 345677799999999998864
No 187
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=82.29 E-value=36 Score=32.66 Aligned_cols=243 Identities=9% Similarity=0.013 Sum_probs=0.0
Q ss_pred EeCCCcccEEEEecCCCEEE-EEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEE
Q 004094 395 IPLGEHPRRICHQEQSRTFA-ICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVG 473 (774)
Q Consensus 395 i~l~~tp~~i~y~~~~~~~~-v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VG 473 (774)
+.++..|..++++++.+.|+ ...... .|..+|+.+.. ...+.......+.++. +..++. +.|+
T Consensus 20 ~~~~~~p~~i~~~~~g~l~v~~~~~~~----------~i~~~~~~~~~-~~~~~~~~~~~p~~i~---~~~~g~--l~v~ 83 (270)
T 1rwi_B 20 IDFRLSPSGVAVDSAGNVYVTSEGMYG----------RVVKLATGSTG-TTVLPFNGLYQPQGLA---VDGAGT--VYVT 83 (270)
T ss_dssp CSSCCCEEEEEECTTCCEEEEECSSSC----------EEEEECC------EECCCCSCCSCCCEE---ECTTCC--EEEE
T ss_pred ccccCCccceEECCCCCEEEEccCCCC----------cEEEecCCCcc-cceEeeCCcCCcceeE---ECCCCC--EEEE
Q ss_pred eeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEE--CCEEEEEEeeecCCCchhhhhhcccc
Q 004094 474 TAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAI--NQKIQLYKWMLRDDGTRELQSECGHH 551 (774)
Q Consensus 474 T~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~--g~~l~v~~~~~~~~~~~~l~~~~~~~ 551 (774)
. ..|+|+.|+.....+..........|-.-...-+|+|+++. +..|+++. ..............
T Consensus 84 ~----------~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~----~~~~~~~~~~~~~~ 149 (270)
T 1rwi_B 84 D----------FNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLA----AGSKTQTVLPFTGL 149 (270)
T ss_dssp E----------TTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEEC----TTCCSCEECCCCSC
T ss_pred c----------CCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEE----CCCceeEeeccccC
Q ss_pred cceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEcc-CCcEEEEeeCCCCCC
Q 004094 552 GHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAEN-NFNLFTVRKNSEGAT 630 (774)
Q Consensus 552 ~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~-~gnl~~l~~~~~~~~ 630 (774)
..+..+.+...++ ++++|...+- +.+|+.+............ ....++.+-.++.+.++|. .+.+..+..+.
T Consensus 150 ~~p~~i~~~~~g~-l~v~~~~~~~-i~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~---- 222 (270)
T 1rwi_B 150 NDPDGVAVDNSGN-VYVTDTDNNR-VVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS---- 222 (270)
T ss_dssp CSCCCEEECTTCC-EEEEEGGGTE-EEEECTTTCCEEECCCSSC-CSEEEEEECTTCCEEEEETTTSCEEEECTTC----
T ss_pred CCceeEEEeCCCC-EEEEECCCCE-EEEEecCCCceEeecccCC-CCceEEEECCCCCEEEEECCCCcEEEEcCCC----
Q ss_pred ccccceeeeEEEEEcCcccceEEeeeeeecCCCCCCCCccEEEEEccccceEEEEecChh
Q 004094 631 DEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHE 690 (774)
Q Consensus 631 ~~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gsi~~i~~l~~~ 690 (774)
.........-...+..+.. .......+....+|.|..+..-.++
T Consensus 223 -----~~~~~~~~~~~~~p~~i~~-----------~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 223 -----TTSTVLPFTGLNTPLAVAV-----------DSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp -----SCCEECCCCSCSCEEEEEE-----------CTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred -----CcceeeccCCCCCceeEEE-----------CCCCCEEEEECCCCEEEEEcCCCcc
No 188
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=81.61 E-value=56 Score=34.33 Aligned_cols=181 Identities=11% Similarity=-0.005 Sum_probs=85.9
Q ss_pred EEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEE-ECC--CCceEEEEEE
Q 004094 383 TIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTY-PLD--TFEYGCSILS 459 (774)
Q Consensus 383 ~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~-~~~--~~E~~~si~~ 459 (774)
.++...+........+..|+ ++++++.+.++++.... ...|..+++.+....... .+. ....+.++.
T Consensus 156 ~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~--------~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~ia- 225 (409)
T 3hrp_A 156 LISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEG--------THTVYVYMKASGWAPTRIGQLGSTFSGKIGAVA- 225 (409)
T ss_dssp EEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSST--------TCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCE-
T ss_pred EEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCC--------CceEEEEEcCCCceeEEeeeccchhcCCcEEEE-
Confidence 44333333333344466677 99999888666554321 126777777532222221 111 223334433
Q ss_pred EEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecC----cee-Eeccc--cCeEEEEEC--CEEE
Q 004094 460 CSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKG----AVY-SLNAF--NGKLLAAIN--QKIQ 530 (774)
Q Consensus 460 ~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g----~v~-~i~~~--~~~lv~~~g--~~l~ 530 (774)
+..+ ...|.+ +. ..|+|+.|+...+...++......+ .++ .++-- +++|+++-. ++|+
T Consensus 226 --v~p~-~g~lyv-~d---------~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~ 292 (409)
T 3hrp_A 226 --LDET-EEWLYF-VD---------SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVY 292 (409)
T ss_dssp --ECTT-SSEEEE-EC---------TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEE
T ss_pred --EeCC-CCeEEE-EE---------CCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEE
Confidence 3322 233444 21 2478888887666665553222221 123 44432 577777753 5565
Q ss_pred EEEeeecCCCchhhh-hhc---cc-------ccceEEEEEEEe--CCEEEEEec-cccEEEEEEEccCCeEEEEec
Q 004094 531 LYKWMLRDDGTRELQ-SEC---GH-------HGHILALYVQTR--GDFIVVGDL-MKSISLLIYKHEEGAIEERAR 592 (774)
Q Consensus 531 v~~~~~~~~~~~~l~-~~~---~~-------~~~~~~~~l~~~--~~~I~vgD~-~~Sv~~~~~~~~~~~l~~~a~ 592 (774)
.++. ++..... ... .+ .....|..+.+. |+ |+++|. ... .+.+|+...+.+..++.
T Consensus 293 ~~~~----~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~-~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 293 KITP----DGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGY-CLRKLDILDGYVSTVAG 362 (409)
T ss_dssp EECT----TCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTC-EEEEEETTTTEEEEEEE
T ss_pred EEec----CCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCC-EEEEEECCCCEEEEEeC
Confidence 5443 2221111 000 00 001124445543 44 999998 544 35678855566665554
No 189
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=81.54 E-value=40 Score=32.64 Aligned_cols=164 Identities=11% Similarity=0.041 Sum_probs=95.6
Q ss_pred EEEEeCCCc--ccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceE
Q 004094 392 IRSIPLGEH--PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVY 469 (774)
Q Consensus 392 ~~~i~l~~t--p~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~ 469 (774)
++..|-... -.-+.|++ +.+.+.+... ..|.|+.+|+.+.+++.++.+++.-....+..+ +. .
T Consensus 12 ~~~~phd~~~ftqGL~~~~--~~LyestG~~-------g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-----~~-~ 76 (243)
T 3mbr_X 12 VKRYPHDTTAFTEGLFYLR--GHLYESTGET-------GRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-----RD-R 76 (243)
T ss_dssp EEEEECCTTCCEEEEEEET--TEEEEEECCT-------TSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-----TT-E
T ss_pred EEEcCCCCccccccEEEEC--CEEEEECCCC-------CCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-----CC-E
Confidence 444555432 23567776 4444444331 247899999999999999999876554444432 22 3
Q ss_pred EEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEEC-CEEEEEEeeecCCCchhhhhhc
Q 004094 470 YCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSEC 548 (774)
Q Consensus 470 i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g-~~l~v~~~~~~~~~~~~l~~~~ 548 (774)
+.+.|- ..+++++|+.. .++++......+.-.+++.-+++|+++-| .+|++++ ... .+..+..
T Consensus 77 ly~ltw---------~~~~v~v~D~~--tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iD--p~t---~~~~~~I 140 (243)
T 3mbr_X 77 LIQLTW---------RNHEGFVYDLA--TLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLD--PDT---LQQVGSI 140 (243)
T ss_dssp EEEEES---------SSSEEEEEETT--TTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEEC--TTT---CCEEEEE
T ss_pred EEEEEe---------eCCEEEEEECC--cCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEe--CCC---CeEEEEE
Confidence 444452 34788888753 46666666666666788876778888877 4565544 221 1222111
Q ss_pred cc--ccc--eEEEEEEEeCCEEEEEeccccEEEEEEEccCCeE
Q 004094 549 GH--HGH--ILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 587 (774)
Q Consensus 549 ~~--~~~--~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l 587 (774)
.. ... .....|.+.+.+|++..-... .+.+.++..++.
T Consensus 141 ~V~~~g~~~~~lNeLe~~~G~lyanvw~s~-~I~vIDp~tG~V 182 (243)
T 3mbr_X 141 KVTAGGRPLDNLNELEWVNGELLANVWLTS-RIARIDPASGKV 182 (243)
T ss_dssp ECEETTEECCCEEEEEEETTEEEEEETTTT-EEEEECTTTCBE
T ss_pred EEccCCcccccceeeEEeCCEEEEEECCCC-eEEEEECCCCCE
Confidence 11 111 123445667788888775444 345667665553
No 190
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=81.38 E-value=43 Score=32.90 Aligned_cols=162 Identities=15% Similarity=0.100 Sum_probs=92.4
Q ss_pred EEEEEeCCCcc--cEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCce
Q 004094 391 HIRSIPLGEHP--RRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNV 468 (774)
Q Consensus 391 ~~~~i~l~~tp--~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~ 468 (774)
.++.+|.+..+ +-+.|+. +.+.+++... ..|+.+|+++.+++.+. +++.-....+.. . +..
T Consensus 45 Vv~~~phd~~~ftqGL~~~~--~~Ly~stG~~---------g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~---~--g~~ 107 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFHQ--GHFFESTGHQ---------GTLRQLSLESAQPVWME-RLGNIFAEGLAS---D--GER 107 (268)
T ss_dssp EEEEEECCTTCCEEEEEEET--TEEEEEETTT---------TEEEECCSSCSSCSEEE-ECTTCCEEEEEE---C--SSC
T ss_pred EEEEEcCCCccccceEEEEC--CEEEEEcCCC---------CEEEEEECCCCcEEeEE-CCCCcceeEEEE---e--CCE
Confidence 35667777666 6778774 4555555432 24999999999999888 776533333332 1 223
Q ss_pred EEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEEC-CEEEEEEeeecCCCchhhhhh
Q 004094 469 YYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSE 547 (774)
Q Consensus 469 ~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g-~~l~v~~~~~~~~~~~~l~~~ 547 (774)
+.+.|- ..+++++|+.. .++++......+.-..++.-+++|+++-| ++|++++ ... .+..+.
T Consensus 108 -Ly~ltw---------~~~~v~V~D~~--Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iD--p~T---~~v~~~ 170 (268)
T 3nok_A 108 -LYQLTW---------TEGLLFTWSGM--PPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHE--PDG---FALVGA 170 (268)
T ss_dssp -EEEEES---------SSCEEEEEETT--TTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEEC--TTT---CCEEEE
T ss_pred -EEEEEc---------cCCEEEEEECC--cCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEc--CCC---CeEEEE
Confidence 333342 34788888764 45555555666655677766677888875 4566544 221 122211
Q ss_pred ccc--ccce--EEEEEEEeCCEEEEEeccccEEEEEEEccCCeE
Q 004094 548 CGH--HGHI--LALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 587 (774)
Q Consensus 548 ~~~--~~~~--~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l 587 (774)
... .... ....|.+.+.+|++..-... .+.+.+++.++.
T Consensus 171 I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~-~I~vIDp~TG~V 213 (268)
T 3nok_A 171 VQVKLRGQPVELINELECANGVIYANIWHSS-DVLEIDPATGTV 213 (268)
T ss_dssp EECEETTEECCCEEEEEEETTEEEEEETTCS-EEEEECTTTCBE
T ss_pred EEeCCCCcccccccccEEeCCEEEEEECCCC-eEEEEeCCCCcE
Confidence 111 1111 23445566778888775544 355566655543
No 191
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=79.91 E-value=2.1 Score=32.47 Aligned_cols=29 Identities=10% Similarity=0.299 Sum_probs=25.6
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Q 004094 745 SRTRMDEISKTMNVSVEELCKRVEELTRL 773 (774)
Q Consensus 745 ~~~~q~~i~~~~~~~~~~i~~~l~~l~~~ 773 (774)
....+++||++.|++++++.++|.+...|
T Consensus 34 ~~SR~~RIA~GSG~~v~eVn~Llkqf~~m 62 (69)
T 1dul_A 34 KGSRKRRIAAGSGMQVQDVNRLLKQFDDM 62 (69)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999999987754
No 192
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=78.97 E-value=56 Score=32.78 Aligned_cols=219 Identities=11% Similarity=-0.006 Sum_probs=102.7
Q ss_pred cEEEEeCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCc---eEEEEE
Q 004094 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTF---EFISTY 446 (774)
Q Consensus 370 ~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~---~~i~~~ 446 (774)
.|++++.+.++...++... ...-++-...|..++|++..+.+.++-... ..|..+++.+. ......
T Consensus 3 ~ll~~~~~~I~~i~~~~~~--~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~---------~~I~~~~~~g~~~~~~~~~~ 71 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSE--YTSLIPNLRNVVALDTEVASNRIYWSDLSQ---------RMICSTQLDRAHGVSSYDTV 71 (316)
T ss_dssp EEEEECBSSEEEEETTSCC--CEEEECSCSSEEEEEEETTTTEEEEEETTT---------TEEEEEEC--------CEEE
T ss_pred EEEEECCCeEEEEECCCcc--eEehhcCCCceEEEEEEeCCCEEEEEECCC---------CcEEEEECCCCCCCcccEEE
Confidence 3566666666654444322 233456667788999998766555544321 35666666431 111111
Q ss_pred ECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEecc--ccCeEEEE
Q 004094 447 PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNA--FNGKLLAA 524 (774)
Q Consensus 447 ~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~--~~~~lv~~ 524 (774)
.-..-..+..++ +...+...++.- ...++|.+++......+.+..... ..+.+++. .+++|+++
T Consensus 72 ~~~~~~~p~gla---vd~~~~~ly~~d----------~~~~~I~~~~~~g~~~~~~~~~~~-~~P~~iavdp~~g~ly~~ 137 (316)
T 1ijq_A 72 ISRDIQAPDGLA---VDWIHSNIYWTD----------SVLGTVSVADTKGVKRKTLFRENG-SKPRAIVVDPVHGFMYWT 137 (316)
T ss_dssp ECSSCSCCCEEE---EETTTTEEEEEE----------TTTTEEEEEETTSSSEEEEEECTT-CCEEEEEEETTTTEEEEE
T ss_pred EeCCCCCcCEEE---EeecCCeEEEEE----------CCCCEEEEEeCCCCceEEEEECCC-CCcceEEeCCCCCEEEEE
Confidence 000112223332 111112222211 124677777665444444433222 34455553 46777665
Q ss_pred E-C--CEEEEEEeeecCCCch--hhhhhcccccceEEEEEEE--eCCEEEEEeccccEEEEEEEccCCeEEEEecc-CCc
Q 004094 525 I-N--QKIQLYKWMLRDDGTR--ELQSECGHHGHILALYVQT--RGDFIVVGDLMKSISLLIYKHEEGAIEERARD-YNA 596 (774)
Q Consensus 525 ~-g--~~l~v~~~~~~~~~~~--~l~~~~~~~~~~~~~~l~~--~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D-~~~ 596 (774)
- + .+|+.+.. +|.. .+... ....|..|.+ .+++|+++|....- +.+++.+......+... ...
T Consensus 138 d~~~~~~I~~~~~----dG~~~~~~~~~----~~~~P~gla~d~~~~~lY~~D~~~~~-I~~~d~dg~~~~~~~~~~~~~ 208 (316)
T 1ijq_A 138 DWGTPAKIKKGGL----NGVDIYSLVTE----NIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRL 208 (316)
T ss_dssp ECSSSCEEEEEET----TSCCEEEEECS----SCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEEECTTTT
T ss_pred ccCCCCeEEEEcC----CCCCeEEEEEC----CCCCceEEEEeccCCEEEEEECCCCe-EEEEecCCCceEEEeecCCcc
Confidence 4 3 46665553 2321 11111 1123444444 47899999987653 44566654434444332 122
Q ss_pred ceeEEEEEeeCCeEEEEccC-CcEEEEe
Q 004094 597 NWMSAVEILDDDIYLGAENN-FNLFTVR 623 (774)
Q Consensus 597 ~~v~~~~~l~~~~~l~~D~~-gnl~~l~ 623 (774)
.+..++.+ +++.+..+|.. +.+..+.
T Consensus 209 ~~P~giav-~~~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 209 AHPFSLAV-FEDKVFWTDIINEAIFSAN 235 (316)
T ss_dssp SSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred CCcEEEEE-ECCEEEEEECCCCeEEEEe
Confidence 23334433 56777788864 3344443
No 193
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=78.69 E-value=94 Score=35.21 Aligned_cols=118 Identities=9% Similarity=-0.054 Sum_probs=60.2
Q ss_pred cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCC
Q 004094 400 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 479 (774)
Q Consensus 400 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~ 479 (774)
.+..+.+ |+.+.+++.+.... .....|.++|..+.+....+.-.....+..+..+.+..+++ +++.+..
T Consensus 288 ~~~~~~~-pDg~~l~~~~~~~~-----~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~---- 356 (741)
T 2ecf_A 288 YLARVNW-RDPQHLSFQRQSRD-----QKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSER---- 356 (741)
T ss_dssp EEEEEEE-EETTEEEEEEEETT-----SSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECT----
T ss_pred EEEEEEe-CCCCEEEEEEeccc-----CCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecC----
Confidence 4567888 88888887775431 13468999999887765443322211110111123444555 5555431
Q ss_pred CCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc--cC-eEEEEECC----EEEEEEee
Q 004094 480 EENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF--NG-KLLAAINQ----KIQLYKWM 535 (774)
Q Consensus 480 ~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~--~~-~lv~~~g~----~l~v~~~~ 535 (774)
+ ...+|+.++... +++.+. .....|.++..+ +| +|+++.+. .+.+|.++
T Consensus 357 --~--g~~~l~~~~~~~-~~~~l~--~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 357 --T--GFQHLYRIDSKG-KAAALT--HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp --T--SSCEEEEECSSS-CEEESC--CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred --C--CccEEEEEcCCC-Ceeeee--ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 1 123555554333 333322 224556655433 34 56554432 67888775
No 194
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=78.45 E-value=69 Score=33.50 Aligned_cols=223 Identities=10% Similarity=-0.023 Sum_probs=101.1
Q ss_pred cEEEEeCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCce---EEEEE
Q 004094 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFE---FISTY 446 (774)
Q Consensus 370 ~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~---~i~~~ 446 (774)
.++++..+.++...++... ...-++-...|..++|++..+.+.++-... ..|.-+++.... ....+
T Consensus 85 ~ll~~~~~~I~~i~l~~~~--~~~~~~~~~~~~~l~~d~~~~~lywsD~~~---------~~I~~~~~~g~~~~~~~~~~ 153 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRSE--YTSLIPNLRNVVALDTEVASNRIYWSDLSQ---------RMICSTQLDRAHGVSSYDTV 153 (400)
T ss_dssp EEEEEETTEEEEECTTSCS--CEEEECSCSCEEEEEEETTTTEEEEEETTT---------TEEEEEEC------CCCEEE
T ss_pred eeEEeccceeEEEccCCcc--eeEeccccCcceEEeeeeccCceEEEecCC---------CeEEEEEcccCCCCCcceEE
Confidence 4556667777655554322 222344456788888887666544443221 244444543210 00111
Q ss_pred ECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEec--cccCeEEEE
Q 004094 447 PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLN--AFNGKLLAA 524 (774)
Q Consensus 447 ~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~--~~~~~lv~~ 524 (774)
.-..-..+..++ +......+++.- ...++|.+++.+....+.+...... .+.+|+ +.+|+|+++
T Consensus 154 ~~~~~~~p~gla---vD~~~~~lY~~d----------~~~~~I~~~~~~g~~~~~l~~~~~~-~P~~iavdp~~g~ly~t 219 (400)
T 3p5b_L 154 ISRDIQAPDGLA---VDWIHSNIYWTD----------SVLGTVSVADTKGVKRKTLFRENGS-KPRAIVVDPVHGFMYWT 219 (400)
T ss_dssp ECSSCSCEEEEE---EETTTTEEEEEE----------TTTTEEEEECTTTCSEEEEEECSSC-CEEEEEEETTTTEEEEE
T ss_pred EeCCCCCcccEE---EEecCCceEEEE----------CCCCeEEEEeCCCCceEEEEeCCCC-CcceEEEecccCeEEEE
Confidence 111112222222 111112222211 1235666665544444444433222 245444 357888777
Q ss_pred E-C--CEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEecc-CCcceeE
Q 004094 525 I-N--QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARD-YNANWMS 600 (774)
Q Consensus 525 ~-g--~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D-~~~~~v~ 600 (774)
- | .+|+.... +|.....-...-...+..+.++..+++|+++|....- +.+++.+......+... ..-.+..
T Consensus 220 d~~~~~~I~~~~~----dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~~~~l~~P~ 294 (400)
T 3p5b_L 220 DWGTPAKIKKGGL----NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPF 294 (400)
T ss_dssp ECSSSCCEEEEET----TSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCCCEEEEECSSTTSSEE
T ss_pred eCCCCCEEEEEeC----CCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE-EEEEeCCCCccEEEEeCCCCCCCCE
Confidence 6 3 45665553 2321111010000123344444457899999987653 44566654433333332 1122333
Q ss_pred EEEEeeCCeEEEEccC-CcEEEEe
Q 004094 601 AVEILDDDIYLGAENN-FNLFTVR 623 (774)
Q Consensus 601 ~~~~l~~~~~l~~D~~-gnl~~l~ 623 (774)
++.+ +++.+..+|.. +.|+.+.
T Consensus 295 gl~v-~~~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 295 SLAV-FEDKVFWTDIINEAIFSAN 317 (400)
T ss_dssp EEEE-ETTEEEEEESSSCSEEEEE
T ss_pred EEEE-eCCEEEEecCCCCeEEEEE
Confidence 4443 66777777754 4455454
No 195
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=78.08 E-value=60 Score=32.59 Aligned_cols=185 Identities=10% Similarity=0.118 Sum_probs=90.9
Q ss_pred CcccEEEEecCCCEEEEEEeccCC---CCCc-----------eeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcC
Q 004094 399 EHPRRICHQEQSRTFAICSLKNQS---CAEE-----------SEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSD 464 (774)
Q Consensus 399 ~tp~~i~y~~~~~~~~v~~~~~~~---~~~~-----------~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~ 464 (774)
..|..++++++.+.|+........ ..+. .....|.++|+.+.+.+..+.-..-..+..++ +..
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia---~d~ 100 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLS---IDT 100 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEE---ECT
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEE---ECC
Confidence 347778888887777544333110 0000 01236889999888776544322223455554 443
Q ss_pred CCceEEEEEeeeeCCCCCCCcceEEEEEEEeCC--eEEEEEEE-------eecCceeEeccc--cCeEEEEE---CCEEE
Q 004094 465 DSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG--KLQLIAEK-------ETKGAVYSLNAF--NGKLLAAI---NQKIQ 530 (774)
Q Consensus 465 ~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~--kl~~~~~~-------~~~g~v~~i~~~--~~~lv~~~---g~~l~ 530 (774)
+++ +++..+ ..++|+.|+.... .+..+... ..-..+..|+.- ++.|+++- +++|+
T Consensus 101 ~g~-l~v~d~----------~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 101 DGN-YWVTDV----------ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp TSC-EEEEET----------TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred CCC-EEEEEC----------CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 334 444333 2367887765432 22222210 111245666654 57777776 35666
Q ss_pred EEEeeecCCCchhhhhhccc---------ccceEEEEEEEe--CCEEEEEeccccEEEEEEEccCCe-EEEEeccCCcce
Q 004094 531 LYKWMLRDDGTRELQSECGH---------HGHILALYVQTR--GDFIVVGDLMKSISLLIYKHEEGA-IEERARDYNANW 598 (774)
Q Consensus 531 v~~~~~~~~~~~~l~~~~~~---------~~~~~~~~l~~~--~~~I~vgD~~~Sv~~~~~~~~~~~-l~~~a~D~~~~~ 598 (774)
+|+. ++. +...... .....|..+.+. ++.++|+|...+- +..|+.+.++ +..+........
T Consensus 170 ~~~~----~g~--~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~~G~~~~~~~~~~~~~~ 242 (329)
T 3fvz_A 170 QFSP----SGK--FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKTDTKEFVREIKHASFGRN 242 (329)
T ss_dssp EECT----TSC--EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEETTTCCEEEEECCTTTTTC
T ss_pred EEcC----CCC--EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEECCCCcEEEEEeccccCCC
Confidence 6542 231 2111100 011134555553 4799999988773 4567876344 444433323333
Q ss_pred eEEEEE
Q 004094 599 MSAVEI 604 (774)
Q Consensus 599 v~~~~~ 604 (774)
+.++.+
T Consensus 243 ~~~~~~ 248 (329)
T 3fvz_A 243 VFAISY 248 (329)
T ss_dssp EEEEEE
T ss_pred cceeee
Confidence 444433
No 196
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=77.46 E-value=58 Score=32.11 Aligned_cols=153 Identities=12% Similarity=0.099 Sum_probs=81.2
Q ss_pred ccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCC
Q 004094 401 PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 480 (774)
Q Consensus 401 p~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~ 480 (774)
+.-.++++..+.+.++-.. ...|..+|+.+.+. ..+.+ ...+.++. +..+++ ++|++.
T Consensus 15 ~Egp~w~~~~~~l~~~d~~---------~~~i~~~d~~~~~~-~~~~~--~~~~~~i~---~~~dG~--l~v~~~----- 72 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIP---------AKKVCRWDSFTKQV-QRVTM--DAPVSSVA---LRQSGG--YVATIG----- 72 (297)
T ss_dssp EEEEEEETTTTEEEEEETT---------TTEEEEEETTTCCE-EEEEC--SSCEEEEE---EBTTSS--EEEEET-----
T ss_pred ccCCeEECCCCEEEEEECC---------CCEEEEEECCCCcE-EEEeC--CCceEEEE---ECCCCC--EEEEEC-----
Confidence 4567788866655554433 23688889877654 33443 34555554 344444 666651
Q ss_pred CCCCcceEEEEEEEeCCeEEEEEEEeec---CceeEeccc-cCeEEEEE-C----------CEEEEEEeeecCCCchhhh
Q 004094 481 ENEPTKGRILVFIVEDGKLQLIAEKETK---GAVYSLNAF-NGKLLAAI-N----------QKIQLYKWMLRDDGTRELQ 545 (774)
Q Consensus 481 e~~~~~Grl~v~~i~~~kl~~~~~~~~~---g~v~~i~~~-~~~lv~~~-g----------~~l~v~~~~~~~~~~~~l~ 545 (774)
++|+.|+...++++.+...... ..+..++.- +|+++++. + ..-.+|.++. +++ +.
T Consensus 73 ------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~--~g~--~~ 142 (297)
T 3g4e_A 73 ------TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP--DHH--VK 142 (297)
T ss_dssp ------TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT--TSC--EE
T ss_pred ------CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC--CCC--EE
Confidence 4788888777788766643211 124444433 67777764 2 2345666642 221 21
Q ss_pred hhcccccceEEEEEEE--eCCEEEEEeccc-cEEEEEEEccCCeE
Q 004094 546 SECGHHGHILALYVQT--RGDFIVVGDLMK-SISLLIYKHEEGAI 587 (774)
Q Consensus 546 ~~~~~~~~~~~~~l~~--~~~~I~vgD~~~-Sv~~~~~~~~~~~l 587 (774)
.... ....+..+.. .++.+++.|... .|..+.++.+.+.+
T Consensus 143 ~~~~--~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 143 KYFD--QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI 185 (297)
T ss_dssp EEEE--EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE
T ss_pred EEee--ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc
Confidence 1111 1112333433 466888888765 46655554344443
No 197
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=77.32 E-value=54 Score=31.69 Aligned_cols=117 Identities=8% Similarity=0.074 Sum_probs=70.3
Q ss_pred EEEEEEEeecCc--eeEeccccCeEEEEECC----EEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEecc
Q 004094 499 LQLIAEKETKGA--VYSLNAFNGKLLAAINQ----KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLM 572 (774)
Q Consensus 499 l~~~~~~~~~g~--v~~i~~~~~~lv~~~g~----~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~ 572 (774)
.+++.+..++.. ...+.-.++.|+.+.|. .|..+++. .+ ++.+........++..+...+++|++.+-.
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~---tg--kv~~~~~l~~~~fgeGi~~~~~~ly~ltw~ 83 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLE---TG--RILQRAEVPPPYFGAGIVAWRDRLIQLTWR 83 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETT---TC--CEEEEEECCTTCCEEEEEEETTEEEEEESS
T ss_pred eEEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECC---CC--CEEEEEeCCCCcceeEEEEeCCEEEEEEee
Confidence 445555554333 33565447889999987 78876642 22 343333334444556677789999999988
Q ss_pred ccEEEEEEEccCCeE-EEEeccCCcceeEEEEEeeCCeEEEEccCCcEEEEeeC
Q 004094 573 KSISLLIYKHEEGAI-EERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKN 625 (774)
Q Consensus 573 ~Sv~~~~~~~~~~~l-~~~a~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~ 625 (774)
.+.. +.|+.+..++ ..+...... |..+ -+...++++|..+.|+++...
T Consensus 84 ~~~v-~v~D~~tl~~~~ti~~~~~G-wglt---~dg~~L~vSdgs~~l~~iDp~ 132 (243)
T 3mbr_X 84 NHEG-FVYDLATLTPRARFRYPGEG-WALT---SDDSHLYMSDGTAVIRKLDPD 132 (243)
T ss_dssp SSEE-EEEETTTTEEEEEEECSSCC-CEEE---ECSSCEEEECSSSEEEEECTT
T ss_pred CCEE-EEEECCcCcEEEEEeCCCCc-eEEe---eCCCEEEEECCCCeEEEEeCC
Confidence 8864 4678755433 233322222 3222 244678899988888777643
No 198
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=77.04 E-value=61 Score=32.16 Aligned_cols=206 Identities=11% Similarity=-0.030 Sum_probs=96.9
Q ss_pred EEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEE
Q 004094 381 IGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSC 460 (774)
Q Consensus 381 i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~ 460 (774)
|..++...+. .+.+..+..|.-+++.++.+.|+.-.... ...+..+|+.+.+......+........++.+
T Consensus 55 I~~~d~~g~~-~~~~~~~~~p~gia~~~dG~l~vad~~~~--------~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~ 125 (306)
T 2p4o_A 55 IVSITPDGNQ-QIHATVEGKVSGLAFTSNGDLVATGWNAD--------SIPVVSLVKSDGTVETLLTLPDAIFLNGITPL 125 (306)
T ss_dssp EEEECTTCCE-EEEEECSSEEEEEEECTTSCEEEEEECTT--------SCEEEEEECTTSCEEEEEECTTCSCEEEEEES
T ss_pred EEEECCCCce-EEEEeCCCCceeEEEcCCCcEEEEeccCC--------cceEEEEcCCCCeEEEEEeCCCccccCccccc
Confidence 4455544332 34566778899999999888554332111 12355566656554333344333333333321
Q ss_pred EEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEe------ec---CceeEeccccCeEEEEE--CCEE
Q 004094 461 SFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE------TK---GAVYSLNAFNGKLLAAI--NQKI 529 (774)
Q Consensus 461 ~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~------~~---g~v~~i~~~~~~lv~~~--g~~l 529 (774)
. +.. +.|.. ...|+||.++...++.++..... .. ..+..|..-+++|+++- +++|
T Consensus 126 ---~-~~~-~~v~d---------~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I 191 (306)
T 2p4o_A 126 ---S-DTQ-YLTAD---------SYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLL 191 (306)
T ss_dssp ---S-SSE-EEEEE---------TTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEE
T ss_pred ---C-CCc-EEEEE---------CCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEE
Confidence 1 222 33321 13578888876544433321110 00 12334532234676665 4677
Q ss_pred EEEEeeecCCCchhhhhhc-ccc-cceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCc-ceeEEEEEe-
Q 004094 530 QLYKWMLRDDGTRELQSEC-GHH-GHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNA-NWMSAVEIL- 605 (774)
Q Consensus 530 ~v~~~~~~~~~~~~l~~~~-~~~-~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~-~~v~~~~~l- 605 (774)
+.|+++. ++. +.... ... ..+..+.+...| .++|+|...+- +.+|+++ +++..+++-..+ .+.+++.|-
T Consensus 192 ~~~~~~~--~g~--~~~~~~~~~~~~P~gi~vd~dG-~l~va~~~~~~-V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g 264 (306)
T 2p4o_A 192 LRIPVDS--TDK--PGEPEIFVEQTNIDDFAFDVEG-NLYGATHIYNS-VVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQ 264 (306)
T ss_dssp EEEEBCT--TSC--BCCCEEEEESCCCSSEEEBTTC-CEEEECBTTCC-EEEECTT-CCEEEEECGGGTCTTEEEEEECC
T ss_pred EEEEeCC--CCC--CCccEEEeccCCCCCeEECCCC-CEEEEeCCCCe-EEEECCC-CCEEEEeecccccCCceEEEEec
Confidence 7777642 121 11110 000 112223344345 57888875442 4567775 555544332223 456666554
Q ss_pred --eC-CeEEEEccC
Q 004094 606 --DD-DIYLGAENN 616 (774)
Q Consensus 606 --~~-~~~l~~D~~ 616 (774)
.+ +.+.+++..
T Consensus 265 ~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 265 TEGDCTAIYVVTNG 278 (306)
T ss_dssp STTTTTEEEEEECT
T ss_pred ccCCCCEEEEECCC
Confidence 12 345555553
No 199
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=76.61 E-value=1.1e+02 Score=34.73 Aligned_cols=204 Identities=8% Similarity=0.068 Sum_probs=102.7
Q ss_pred cEEEEeCCeEEEEEEcCCCCeEEEEEeCCCc------------------ccEEEEecCCCEEEEEEeccCC---------
Q 004094 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEH------------------PRRICHQEQSRTFAICSLKNQS--------- 422 (774)
Q Consensus 370 ~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~t------------------p~~i~y~~~~~~~~v~~~~~~~--------- 422 (774)
.+++.+++.+.+..+.... .+++..... +..+.++|+.+.+++++.+...
T Consensus 165 ~la~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~ 241 (741)
T 2ecf_A 165 FVSFIRGRNLWVIDLASGR---QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEV 241 (741)
T ss_dssp EEEEEETTEEEEEETTTTE---EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEE
T ss_pred EEEEEeCCcEEEEecCCCC---EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCC
Confidence 4777788888877766531 223322211 4678999999988887654310
Q ss_pred --------------CCCceeeeEEEEEECCC-ceEEEEEECC--CCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCc
Q 004094 423 --------------CAEESEMHFVRLLDDQT-FEFISTYPLD--TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPT 485 (774)
Q Consensus 423 --------------~~~~~~~~~l~l~d~~~-~~~i~~~~~~--~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~ 485 (774)
.++......|.++|..+ .+... .... ....+.++ .+ .+++ +|+++.... ...
T Consensus 242 ~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~---~~-pDg~-~l~~~~~~~-----~~~ 310 (741)
T 2ecf_A 242 YADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQW-IDLGKEQDIYLARV---NW-RDPQ-HLSFQRQSR-----DQK 310 (741)
T ss_dssp CSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEE-ECCCSCSSEEEEEE---EE-EETT-EEEEEEEET-----TSS
T ss_pred CCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEE-ecCCCCcceEEEEE---Ee-CCCC-EEEEEEecc-----cCC
Confidence 01111234778888776 65432 2222 22333333 34 3344 455544321 135
Q ss_pred ceEEEEEEEeCCeEEEEEEEeecC---ceeEeccc-cCeEEEEEC--CEEEEEEeeecCCCchhhhhhcccccceEE-EE
Q 004094 486 KGRILVFIVEDGKLQLIAEKETKG---AVYSLNAF-NGKLLAAIN--QKIQLYKWMLRDDGTRELQSECGHHGHILA-LY 558 (774)
Q Consensus 486 ~Grl~v~~i~~~kl~~~~~~~~~g---~v~~i~~~-~~~lv~~~g--~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~-~~ 558 (774)
.+.|+++++..++++.+......+ .+.++.-. +|+++++.+ ....+|.++. ++. +............ ..
T Consensus 311 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~--~~~--~~~l~~~~~~v~~~~~ 386 (741)
T 2ecf_A 311 KLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDS--KGK--AAALTHGNWSVDELLA 386 (741)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECS--SSC--EEESCCSSSCEEEEEE
T ss_pred eEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcC--CCC--eeeeeecceEEEeEeE
Confidence 688999998877777666544433 22333322 566655543 3456666642 222 2211111111211 12
Q ss_pred EEEeCCEEEEEeccc---cEEEEEEEccCCeEEEEe
Q 004094 559 VQTRGDFIVVGDLMK---SISLLIYKHEEGAIEERA 591 (774)
Q Consensus 559 l~~~~~~I~vgD~~~---Sv~~~~~~~~~~~l~~~a 591 (774)
.+-.+++|++.-..+ .+.++..+.+...+..+.
T Consensus 387 ~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 387 VDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp EETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred EeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 444566776544433 455666665444344443
No 200
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=76.53 E-value=62 Score=31.94 Aligned_cols=135 Identities=13% Similarity=0.132 Sum_probs=69.5
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEEC-------CEEEEEEeeecCC
Q 004094 467 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN-------QKIQLYKWMLRDD 539 (774)
Q Consensus 467 ~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g-------~~l~v~~~~~~~~ 539 (774)
...+++|-... ......++.|+...++.+.+.....+-.-.+++.++++|++.-| +.+.+|+. . .
T Consensus 62 ~~lyv~GG~~~-----~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~--~-~ 133 (302)
T 2xn4_A 62 GLVFAVGGFNG-----SLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNI--K-S 133 (302)
T ss_dssp TEEEEESCBCS-----SSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEET--T-T
T ss_pred CEEEEEeCcCC-----CccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeC--C-C
Confidence 45677775321 12335688888887787776643332223445556787765544 23444442 2 1
Q ss_pred CchhhhhhcccccceEEEEEEEeCCEEEE-Ee-------ccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEE
Q 004094 540 GTRELQSECGHHGHILALYVQTRGDFIVV-GD-------LMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYL 611 (774)
Q Consensus 540 ~~~~l~~~~~~~~~~~~~~l~~~~~~I~v-gD-------~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l 611 (774)
. ++.....+...-...+..+.+++|++ |- .... +..|+.+.++-..++.-+.++...++..+++..++
T Consensus 134 ~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~--~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 209 (302)
T 2xn4_A 134 N--EWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLST--VECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYA 209 (302)
T ss_dssp T--EEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCC--EEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEE
T ss_pred C--eEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccE--EEEEeCCCCcEEECCCCccccccccEEEECCEEEE
Confidence 1 22222222111111223345676665 32 2344 45688888888887766666655555555433344
Q ss_pred EE
Q 004094 612 GA 613 (774)
Q Consensus 612 ~~ 613 (774)
.+
T Consensus 210 ~G 211 (302)
T 2xn4_A 210 VG 211 (302)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 201
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=76.45 E-value=76 Score=32.94 Aligned_cols=64 Identities=8% Similarity=-0.023 Sum_probs=35.2
Q ss_pred EEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccCCc-EEEE
Q 004094 556 ALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFN-LFTV 622 (774)
Q Consensus 556 ~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~gn-l~~l 622 (774)
.+.++..+++|+++|....- +.+++.+......+.... ..+..++.+ +++.+..+|...+ |..+
T Consensus 250 Glavd~~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~~-~~~P~giav-~~~~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 250 GLTIDYAGRRMYWVDAKHHV-IERANLDGSHRKAVISQG-LPHPFAITV-FEDSLYWTDWHTKSINSA 314 (386)
T ss_dssp EEEEEGGGTEEEEEETTTTE-EEEECTTSCSCEEEECSS-CSSEEEEEE-ETTEEEEEETTTTEEEEE
T ss_pred eEEEeCCCCEEEEEECCCCE-EEEEeCCCCeeEEEEECC-CCCceEEEE-ECCEEEEeeCCCCeEEEE
Confidence 34444458899999998773 556766543322222221 122334444 6777777886443 4433
No 202
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=76.36 E-value=57 Score=31.47 Aligned_cols=192 Identities=9% Similarity=-0.061 Sum_probs=93.4
Q ss_pred CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeC
Q 004094 399 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 478 (774)
Q Consensus 399 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~ 478 (774)
..|..+++++..+.+.++.... ..|..+++.+.... .+.-.....+..+. +..++.. +.|..
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~---------~~I~~~~~~g~~~~-~~~~~~~~~p~~ia---~d~~~~~-lyv~d---- 97 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISE---------PSIGRASLHGGEPT-TIIRQDLGSPEGIA---LDHLGRT-IFWTD---- 97 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTT---------TEEEEEESSSCCCE-EEECTTCCCEEEEE---EETTTTE-EEEEE----
T ss_pred CcEEEEEEecCCCEEEEEECCC---------CEEEEEecCCCCcE-EEEECCCCCccEEE---EEecCCe-EEEEE----
Confidence 3578899998776666554332 36777777543321 11111223444443 2222222 33322
Q ss_pred CCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEecc--ccCeEEEEEC----CEEEEEEeeecCCCch-hhhhhcccc
Q 004094 479 PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNA--FNGKLLAAIN----QKIQLYKWMLRDDGTR-ELQSECGHH 551 (774)
Q Consensus 479 ~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~--~~~~lv~~~g----~~l~v~~~~~~~~~~~-~l~~~~~~~ 551 (774)
...++|.+++.+....+.+..... ..+..++. -+++|+++.. ++|+.+.++ +.. +.......
T Consensus 98 -----~~~~~I~~~~~~g~~~~~~~~~~~-~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d----g~~~~~~~~~~~- 166 (267)
T 1npe_A 98 -----SQLDRIEVAKMDGTQRRVLFDTGL-VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD----GTNRRILAQDNL- 166 (267)
T ss_dssp -----TTTTEEEEEETTSCSCEEEECSSC-SSEEEEEEETTTTEEEEEECCSSSCEEEEEETT----SCCCEEEECTTC-
T ss_pred -----CCCCEEEEEEcCCCCEEEEEECCC-CCccEEEEeeCCCEEEEEECCCCCcEEEEEecC----CCCcEEEEECCC-
Confidence 124678777765333333322222 23455543 3577777652 467666542 211 11100101
Q ss_pred cceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEecc-CCcceeEEEEEeeCCeEEEEccC-CcEEEEee
Q 004094 552 GHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARD-YNANWMSAVEILDDDIYLGAENN-FNLFTVRK 624 (774)
Q Consensus 552 ~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D-~~~~~v~~~~~l~~~~~l~~D~~-gnl~~l~~ 624 (774)
..+..+.++..+++++++|....- +.+|+.+......+... ..|. .+. ++++.+.++|.. +.++.+..
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~-I~~~~~~g~~~~~~~~~~~~P~---gi~-~d~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGRRKVLEGLQYPF---AVT-SYGKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEEEEEEECCCSEE---EEE-EETTEEEEEETTTTEEEEEET
T ss_pred CCCcEEEEcCCCCEEEEEECCCCE-EEEEecCCCceEEEecCCCCce---EEE-EeCCEEEEEECCCCeEEEEeC
Confidence 122333344447899999987653 44566654433333222 2333 332 356777778865 55555544
No 203
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=75.64 E-value=63 Score=32.16 Aligned_cols=139 Identities=13% Similarity=0.135 Sum_probs=70.7
Q ss_pred ceEEEEEeeeeC-CCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEECC----------EEEEEEee
Q 004094 467 NVYYCVGTAYVL-PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQ----------KIQLYKWM 535 (774)
Q Consensus 467 ~~~i~VGT~~~~-~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g~----------~l~v~~~~ 535 (774)
...+++|-.... .+........++.|+...++.+.+.....+-.-.+++.++++|++.-|. .+.+|+.
T Consensus 46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~- 124 (315)
T 4asc_A 46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDR- 124 (315)
T ss_dssp CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEET-
T ss_pred CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECC-
Confidence 456666664321 1122334456888888777776654322211123455567887766552 2455442
Q ss_pred ecCCCchhhhhhcccccceEEEEEEEeCCEEEE-Eec------cccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCC
Q 004094 536 LRDDGTRELQSECGHHGHILALYVQTRGDFIVV-GDL------MKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD 608 (774)
Q Consensus 536 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~v-gD~------~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~ 608 (774)
. ..+ +.....+...-...+..+.+++|++ |-. .+. +..|+...++-..++.-+.+|...++..+++.
T Consensus 125 -~-~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~--~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 198 (315)
T 4asc_A 125 -L-SFK--WGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNK--MCVYDPKKFEWKELAPMQTARSLFGATVHDGR 198 (315)
T ss_dssp -T-TTE--EEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCC--EEEEETTTTEEEECCCCSSCCBSCEEEEETTE
T ss_pred -C-CCc--EeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccce--EEEEeCCCCeEEECCCCCCchhceEEEEECCE
Confidence 1 122 2222222211111223346665554 433 233 55688888888888766667765555555544
Q ss_pred eEEE
Q 004094 609 IYLG 612 (774)
Q Consensus 609 ~~l~ 612 (774)
.++.
T Consensus 199 iyv~ 202 (315)
T 4asc_A 199 IIVA 202 (315)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 204
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=75.58 E-value=65 Score=31.75 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=68.8
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEEC---------CEEEEEEeeec
Q 004094 467 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN---------QKIQLYKWMLR 537 (774)
Q Consensus 467 ~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g---------~~l~v~~~~~~ 537 (774)
...+++|-... ......+..|+...++.+.+.....+-.-.+++.++++|++.-| +.+.+|+. .
T Consensus 109 ~~iyv~GG~~~-----~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~--~ 181 (302)
T 2xn4_A 109 GLLYAVGGFDG-----STGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNA--T 181 (302)
T ss_dssp TEEEEEEEECS-----SCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEET--T
T ss_pred CEEEEEcCCCC-----CccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeC--C
Confidence 45666665321 12346788888877787776543332223345556777766543 23444442 1
Q ss_pred CCCchhhhhhcccccceEEEEEEEeCCEEEE-Eec-----cccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEE
Q 004094 538 DDGTRELQSECGHHGHILALYVQTRGDFIVV-GDL-----MKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYL 611 (774)
Q Consensus 538 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~v-gD~-----~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l 611 (774)
..+ +.....+...-...++.+.++.|++ |-. .+. +..|+.+.++-..++.-+.++.-.++..+++..++
T Consensus 182 -~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~--~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v 256 (302)
T 2xn4_A 182 -TNE--WTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKS--VEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYV 256 (302)
T ss_dssp -TTE--EEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCC--EEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEE
T ss_pred -CCc--EEECCCCccccccccEEEECCEEEEECCCCCCcccce--EEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEE
Confidence 122 2211111111111223345665554 432 233 55788888888888766666654445455433344
Q ss_pred EE
Q 004094 612 GA 613 (774)
Q Consensus 612 ~~ 613 (774)
.+
T Consensus 257 ~G 258 (302)
T 2xn4_A 257 VG 258 (302)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 205
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=75.45 E-value=70 Score=32.06 Aligned_cols=105 Identities=12% Similarity=0.190 Sum_probs=54.7
Q ss_pred cccEEEEec-CCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCC---------ceEEEEEEEEEcCCCceE
Q 004094 400 HPRRICHQE-QSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTF---------EYGCSILSCSFSDDSNVY 469 (774)
Q Consensus 400 tp~~i~y~~-~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~---------E~~~si~~~~~~~~~~~~ 469 (774)
.|..|++++ ..+.|+.-... ...|+.+|+ +.+.+..+.-... ..+.+++ +..++..+
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~---------~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia---~d~~~g~l 210 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYC---------NSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLA---LVPHLDQL 210 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSS---------CCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEE---EETTTTEE
T ss_pred CCcEEEEeCCCCeEEEEeCCC---------CCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEE---EECCCCEE
Confidence 589999998 56655544211 247888885 4555544421110 1244443 33332344
Q ss_pred EEEEeeeeCCCCCCCcceEEEEEEEeCCeE-EEEEEEeecCceeEeccccCeEEEEECC
Q 004094 470 YCVGTAYVLPEENEPTKGRILVFIVEDGKL-QLIAEKETKGAVYSLNAFNGKLLAAINQ 527 (774)
Q Consensus 470 i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl-~~~~~~~~~g~v~~i~~~~~~lv~~~g~ 527 (774)
++... ..++|.+|+...+++ +.+......+.+++++.-.+.++.+.|+
T Consensus 211 ~v~d~----------~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 211 CVADR----------ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp EEEET----------TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECC
T ss_pred EEEEC----------CCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCC
Confidence 44332 346888888764443 3222222344666666545556665553
No 206
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=74.40 E-value=1.2e+02 Score=34.15 Aligned_cols=67 Identities=19% Similarity=0.099 Sum_probs=42.5
Q ss_pred cEEEEEECC-CEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCC
Q 004094 176 SVNVATANA-SQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPD 253 (774)
Q Consensus 176 ~I~~a~~~~-~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~ 253 (774)
.|...+.++ ..++++. ++.+..+.+..+++..+. .....++++++++ + ...++++ . ++.|.+|++.+
T Consensus 83 ~v~~~~~spd~~~~~~~-~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~Sp--d----G~~la~~-~-~~~i~v~~~~~ 150 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLFT-QGGLVGFDMLARKVTYLF--DTNEETASLDFSP--V----GDRVAYV-R-NHNLYIARGGK 150 (706)
T ss_dssp CCEEEEETTTTEEEEEE-TTEEEEEETTTTEEEEEE--CCTTCCTTCEECT--T----SSEEEEE-E-TTEEEEEECBC
T ss_pred CceeEEECCCCeEEEEE-CCEEEEEECCCCceEEcc--CCcccccCCcCCC--C----CCEEEEE-E-CCeEEEEecCc
Confidence 467777664 4555554 577777777666655442 2234566677765 2 4566653 4 89999999976
No 207
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=74.21 E-value=73 Score=31.68 Aligned_cols=226 Identities=10% Similarity=-0.009 Sum_probs=109.1
Q ss_pred EEEEeCCeEEEEEEcCCCCeEEEEEeC--CCcccEEEEecCCCEEEEEEeccC-CCCCceeeeEEEEEECCC--ceEEEE
Q 004094 371 LAIAKEGELTIGTIDDIQKLHIRSIPL--GEHPRRICHQEQSRTFAICSLKNQ-SCAEESEMHFVRLLDDQT--FEFIST 445 (774)
Q Consensus 371 l~~~~~~~l~i~~l~~~~~~~~~~i~l--~~tp~~i~y~~~~~~~~v~~~~~~-~~~~~~~~~~l~l~d~~~--~~~i~~ 445 (774)
+++..++.+......+ .+|.....|. .+.-..++. ...+.|++...... ..........+..+|+.+ |+.+..
T Consensus 7 l~~~GG~~~~~yd~~~-~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISEEGAVAYDPAA-NECYCASLSSQVPKNHVSLVT-KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEETTEEEEEETTT-TEEEEEECCCCSCSSEEEEEC-TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcCCceEEECCCC-CeEecCCCCCCCCccceEEEE-ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 4445555555554433 3565433322 222233333 35567777664211 111122334588889865 554432
Q ss_pred EECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEE
Q 004094 446 YPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAI 525 (774)
Q Consensus 446 ~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~ 525 (774)
++..-.-.++.. + +...+++|-.... +.......++.|+...++.+.+.....+-.-.+.+.++++|++.-
T Consensus 85 --~p~~r~~~~~~~--~---~~~lyv~GG~~~~--~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 155 (315)
T 4asc_A 85 --LPSPRCLFGLGE--A---LNSIYVVGGREIK--DGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIG 155 (315)
T ss_dssp --BSSCEESCEEEE--E---TTEEEEECCEESS--TTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred --CCcchhceeEEE--E---CCEEEEEeCCcCC--CCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEe
Confidence 221111112222 2 2466677654321 112345678889888777776654322222234455677776655
Q ss_pred CC--------EEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEE-Eecccc---EEEEEEEccCCeEEEEecc
Q 004094 526 NQ--------KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVV-GDLMKS---ISLLIYKHEEGAIEERARD 593 (774)
Q Consensus 526 g~--------~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~v-gD~~~S---v~~~~~~~~~~~l~~~a~D 593 (774)
|. .+.+|+.. .. ++.....+...-...+..+.+++|++ |-.... -.+..|+.+.++-..++.-
T Consensus 156 G~~~~~~~~~~~~~yd~~---~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 230 (315)
T 4asc_A 156 GKGSDRKCLNKMCVYDPK---KF--EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAF 230 (315)
T ss_dssp CBCTTSCBCCCEEEEETT---TT--EEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCC
T ss_pred CCCCCCcccceEEEEeCC---CC--eEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCC
Confidence 43 45555431 11 22222222111111223345665554 543221 2456789888888888766
Q ss_pred CCcceeEEEEEeeCCeEEE
Q 004094 594 YNANWMSAVEILDDDIYLG 612 (774)
Q Consensus 594 ~~~~~v~~~~~l~~~~~l~ 612 (774)
+.+|...++..+++..++.
T Consensus 231 p~~r~~~~~~~~~~~l~v~ 249 (315)
T 4asc_A 231 PQERSSLSLVSLVGTLYAI 249 (315)
T ss_dssp SSCCBSCEEEEETTEEEEE
T ss_pred CCcccceeEEEECCEEEEE
Confidence 6777655555554433443
No 208
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=73.90 E-value=72 Score=31.48 Aligned_cols=166 Identities=9% Similarity=-0.023 Sum_probs=82.2
Q ss_pred eEEEEEECCC--ceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEee
Q 004094 430 HFVRLLDDQT--FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKET 507 (774)
Q Consensus 430 ~~l~l~d~~~--~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~ 507 (774)
..+..+|+.+ |+.+.....+.... ++.. + +..++++|-... .......+++|+...++.+.+.....
T Consensus 70 ~~~~~~d~~~~~W~~~~~~p~~r~~~--~~~~--~---~~~iyv~GG~~~----~~~~~~~~~~~d~~~~~W~~~~~~p~ 138 (306)
T 3ii7_A 70 KRMDCYNVVKDSWYSKLGPPTPRDSL--AACA--A---EGKIYTSGGSEV----GNSALYLFECYDTRTESWHTKPSMLT 138 (306)
T ss_dssp CEEEEEETTTTEEEEEECCSSCCBSC--EEEE--E---TTEEEEECCBBT----TBSCCCCEEEEETTTTEEEEECCCSS
T ss_pred ceEEEEeCCCCeEEECCCCCccccce--eEEE--E---CCEEEEECCCCC----CCcEeeeEEEEeCCCCceEeCCCCcC
Confidence 3566677744 55554332222222 2222 2 245677765321 12244578888888878777654332
Q ss_pred cCceeEeccccCeEEEEEC-----------CEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEE-Eec----
Q 004094 508 KGAVYSLNAFNGKLLAAIN-----------QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVV-GDL---- 571 (774)
Q Consensus 508 ~g~v~~i~~~~~~lv~~~g-----------~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~v-gD~---- 571 (774)
+-.-.+++.++++|++.-| +.+.+|+. . .. ++.....+...-...++.+.+++|++ |-.
T Consensus 139 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~--~-~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~ 213 (306)
T 3ii7_A 139 QRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDP--A-TE--TWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLG 213 (306)
T ss_dssp CCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEET--T-TT--EEEEECCCSSCCBSCEEEEETTEEEEECCEETTE
T ss_pred CcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCC--C-CC--eEEECCCccchhhcceEEEECCEEEEEeCCCCCC
Confidence 2222344456777665544 22444442 1 11 22222211111111223345665555 432
Q ss_pred -cccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEE
Q 004094 572 -MKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGA 613 (774)
Q Consensus 572 -~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~ 613 (774)
... +..|+.+.++-..++.-+.++.-.++..+++..++++
T Consensus 214 ~~~~--~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 254 (306)
T 3ii7_A 214 GLDN--VEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLA 254 (306)
T ss_dssp EBCC--EEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEE
T ss_pred CCce--EEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEe
Confidence 233 4568888888888876666776555555544444443
No 209
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=72.99 E-value=75 Score=31.24 Aligned_cols=160 Identities=11% Similarity=0.057 Sum_probs=79.3
Q ss_pred eeEEEEEECCC--ceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEe
Q 004094 429 MHFVRLLDDQT--FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKE 506 (774)
Q Consensus 429 ~~~l~l~d~~~--~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~ 506 (774)
...+..+|+.+ |+.+.....+. ...++.. + +..++++|-... ......++.|+...++.+.+....
T Consensus 127 ~~~~~~~d~~~~~W~~~~~~p~~r--~~~~~~~--~---~~~iyv~GG~~~-----~~~~~~~~~~d~~~~~W~~~~~~p 194 (301)
T 2vpj_A 127 HTSMERYDPNIDQWSMLGDMQTAR--EGAGLVV--A---SGVIYCLGGYDG-----LNILNSVEKYDPHTGHWTNVTPMA 194 (301)
T ss_dssp CCEEEEEETTTTEEEEEEECSSCC--BSCEEEE--E---TTEEEEECCBCS-----SCBCCCEEEEETTTTEEEEECCCS
T ss_pred cceEEEEcCCCCeEEECCCCCCCc--ccceEEE--E---CCEEEEECCCCC-----CcccceEEEEeCCCCcEEeCCCCC
Confidence 35678888754 66665432222 1122222 2 245777765321 124567888988888887775332
Q ss_pred ecCceeEeccccCeEEEEEC-------CEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEE-Eeccc---cE
Q 004094 507 TKGAVYSLNAFNGKLLAAIN-------QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVV-GDLMK---SI 575 (774)
Q Consensus 507 ~~g~v~~i~~~~~~lv~~~g-------~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~v-gD~~~---Sv 575 (774)
.+-.-.+++.++++|++.-| +.+.+|+.. ..+ +.........-...+..+.++.|++ |-... .-
T Consensus 195 ~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~---~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~ 269 (301)
T 2vpj_A 195 TKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIR---TDS--WTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLS 269 (301)
T ss_dssp SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT---TTE--EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEE
T ss_pred cccccceEEEECCEEEEEeCCCCCcccceEEEEeCC---CCc--EEECCCCCCcccceeEEEECCEEEEEcCcCCCcccc
Confidence 22223355556788766544 245555532 122 2222111111111123344665554 43221 13
Q ss_pred EEEEEEccCCeEEEEeccCCcceeEEEEEe
Q 004094 576 SLLIYKHEEGAIEERARDYNANWMSAVEIL 605 (774)
Q Consensus 576 ~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l 605 (774)
.+..|+.+.++-..+..-+.+|.-.++..+
T Consensus 270 ~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 299 (301)
T 2vpj_A 270 SIECYDPIIDSWEVVTSMGTQRCDAGVCVL 299 (301)
T ss_dssp EEEEEETTTTEEEEEEEEEEEEESCEEEEE
T ss_pred cEEEEcCCCCeEEEcCCCCcccccceEEEe
Confidence 456788887777777655555544444333
No 210
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=72.92 E-value=82 Score=31.69 Aligned_cols=129 Identities=12% Similarity=0.039 Sum_probs=63.1
Q ss_pred ceEEEEEEEeCCeEEEEEEEeecCceeEec--cccCeEEEEE-C--CEEEEEEeeecCCCch--hhhhhcccccceEEEE
Q 004094 486 KGRILVFIVEDGKLQLIAEKETKGAVYSLN--AFNGKLLAAI-N--QKIQLYKWMLRDDGTR--ELQSECGHHGHILALY 558 (774)
Q Consensus 486 ~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~--~~~~~lv~~~-g--~~l~v~~~~~~~~~~~--~l~~~~~~~~~~~~~~ 558 (774)
.++|.+++.+....+.+...... .+..|+ +.+|+|+++- | .+|+.+.. +|.. .+... . ...+..+.
T Consensus 100 ~~~I~~~~~dG~~~~~l~~~~~~-~P~giavdp~~g~ly~td~~~~~~I~r~~~----dG~~~~~~~~~-~-l~~Pngla 172 (318)
T 3sov_A 100 TNRIEVSNLDGSLRKVLFWQELD-QPRAIALDPSSGFMYWTDWGEVPKIERAGM----DGSSRFIIINS-E-IYWPNGLT 172 (318)
T ss_dssp TTEEEEEETTSCSCEEEECSSCS-SEEEEEEEGGGTEEEEEECSSSCEEEEEET----TSCSCEEEECS-S-CSCEEEEE
T ss_pred CCEEEEEECCCCcEEEEEeCCCC-CccEEEEeCCCCEEEEEecCCCCEEEEEEc----CCCCeEEEEEC-C-CCCccEEE
Confidence 35676666543333333322222 334444 3467887776 3 56665543 2321 12111 0 01123344
Q ss_pred EEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccC-CcEEEEee
Q 004094 559 VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENN-FNLFTVRK 624 (774)
Q Consensus 559 l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~-gnl~~l~~ 624 (774)
++..+++|+++|..... +.+++.+......+..... .+..++.+ +++.+..+|.. +.+..+..
T Consensus 173 vd~~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~~~-~~P~glav-~~~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 173 LDYEEQKLYWADAKLNF-IHKSNLDGTNRQAVVKGSL-PHPFALTL-FEDILYWTDWSTHSILACNK 236 (318)
T ss_dssp EETTTTEEEEEETTTTE-EEEEETTSCSCEEEECSCC-SCEEEEEE-ETTEEEEEETTTTEEEEEET
T ss_pred EeccCCEEEEEECCCCE-EEEEcCCCCceEEEecCCC-CCceEEEE-eCCEEEEEecCCCeEEEEEC
Confidence 44457899999987763 4566665433333333221 22233333 56777777774 44444443
No 211
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=72.54 E-value=93 Score=32.12 Aligned_cols=82 Identities=10% Similarity=0.000 Sum_probs=50.4
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCC
Q 004094 404 ICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENE 483 (774)
Q Consensus 404 i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~ 483 (774)
++++++.+.+.|+...............|.+||..+++.+.++.+.. .+.++. +..+++..++++..
T Consensus 272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~--~p~~i~---~s~Dg~~~l~v~~~-------- 338 (373)
T 2mad_H 272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH--DVDAIS---VAQDGGPDLYALSA-------- 338 (373)
T ss_pred EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC--CcCeEE---ECCCCCeEEEEEcC--------
Confidence 77888877666665431100000123479999999999999987754 344443 55566655555431
Q ss_pred CcceEEEEEEEeCCeE
Q 004094 484 PTKGRILVFIVEDGKL 499 (774)
Q Consensus 484 ~~~Grl~v~~i~~~kl 499 (774)
..|.|.+++...++.
T Consensus 339 -~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 339 -GTEVLHIYDAGAGDQ 353 (373)
T ss_pred -CCCeEEEEECCCCCE
Confidence 237899998875443
No 212
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=72.16 E-value=90 Score=31.82 Aligned_cols=127 Identities=9% Similarity=0.012 Sum_probs=61.2
Q ss_pred eEEEEEEEeCCeEEEEEEEeecCceeEec--cccCeEEEEEC---CEEEEEEeeecCCCch--hhhhhcccccceEEEEE
Q 004094 487 GRILVFIVEDGKLQLIAEKETKGAVYSLN--AFNGKLLAAIN---QKIQLYKWMLRDDGTR--ELQSECGHHGHILALYV 559 (774)
Q Consensus 487 Grl~v~~i~~~kl~~~~~~~~~g~v~~i~--~~~~~lv~~~g---~~l~v~~~~~~~~~~~--~l~~~~~~~~~~~~~~l 559 (774)
++|.+++.+....+.+...... .+.+|+ +.+++|+++-. .+|+.+.. +|.. .+... . ...+..+.+
T Consensus 138 ~~I~~~~~dG~~~~~l~~~~l~-~P~~iavdp~~g~ly~td~~~~~~I~r~~~----dG~~~~~~~~~-~-~~~PnGla~ 210 (349)
T 3v64_C 138 SRIEVANLDGAHRKVLLWQSLE-KPRAIALHPMEGTIYWTDWGNTPRIEASSM----DGSGRRIIADT-H-LFWPNGLTI 210 (349)
T ss_dssp TEEEEEETTSCSCEEEECTTCS-CEEEEEEETTTTEEEEEECSSSCEEEEEET----TSCSCEESCCS-S-CSCEEEEEE
T ss_pred CeEEEEcCCCCceEEEEeCCCC-CcceEEEecCcCeEEEeccCCCCEEEEEeC----CCCCcEEEEEC-C-CCCcceEEE
Confidence 5666666543333333222222 334444 34677776653 45555443 2321 11111 0 011233444
Q ss_pred EEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccC-CcEEEEe
Q 004094 560 QTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENN-FNLFTVR 623 (774)
Q Consensus 560 ~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~-gnl~~l~ 623 (774)
+..+++|+++|.... .+.+++.+......+.... ..+..++.+ +++.+..+|.. +.+..+.
T Consensus 211 d~~~~~lY~aD~~~~-~I~~~~~dG~~~~~~~~~~-~~~P~giav-~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 211 DYAGRRMYWVDAKHH-VIERANLDGSHRKAVISQG-LPHPFAITV-FEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp ETTTTEEEEEETTTT-EEEEEETTSCSCEEEECSS-CSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred eCCCCEEEEEECCCC-EEEEEeCCCCceEEEEeCC-CCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence 445789999999876 3556776543322222221 123334444 67777778764 4444443
No 213
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=71.02 E-value=47 Score=33.06 Aligned_cols=139 Identities=12% Similarity=0.133 Sum_probs=68.0
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEEC-------CEEEEEEeeecCC
Q 004094 467 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN-------QKIQLYKWMLRDD 539 (774)
Q Consensus 467 ~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g-------~~l~v~~~~~~~~ 539 (774)
..++++|-....+ ........+++|+...++.+.+.....+-.-.+++.++++|++.-| +.+.+|+. . .
T Consensus 71 ~~lyv~GG~~~~~-~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~--~-~ 146 (308)
T 1zgk_A 71 GLLYAVGGRNNSP-DGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEP--E-R 146 (308)
T ss_dssp TEEEEECCEEEET-TEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEET--T-T
T ss_pred CEEEEECCCcCCC-CCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECC--C-C
Confidence 4677777542110 1112334678888877777766533322222344556777766544 34555543 1 1
Q ss_pred CchhhhhhcccccceEEEEEEEeCCEEEE-Eec-----cccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEE
Q 004094 540 GTRELQSECGHHGHILALYVQTRGDFIVV-GDL-----MKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGA 613 (774)
Q Consensus 540 ~~~~l~~~~~~~~~~~~~~l~~~~~~I~v-gD~-----~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~ 613 (774)
.+ +.........-...+..+.+++|++ |-. ... +..|+.+.++-..++.-+.+|.-.++..+++..++.+
T Consensus 147 ~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~--~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 222 (308)
T 1zgk_A 147 DE--WHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNS--AECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAG 222 (308)
T ss_dssp TE--EEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCC--EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred Ce--EeECCCCCccccceEEEEECCEEEEEeCCCCCCcCce--EEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEe
Confidence 12 2212111111111223344666655 432 233 4568888888777765566665555555543334433
No 214
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=68.33 E-value=95 Score=30.57 Aligned_cols=106 Identities=11% Similarity=0.105 Sum_probs=52.7
Q ss_pred cceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cC-eEEEEEC-------CEEEEEEeeecCCCchhhhhh-ccc---c
Q 004094 485 TKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAIN-------QKIQLYKWMLRDDGTRELQSE-CGH---H 551 (774)
Q Consensus 485 ~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~-~lv~~~g-------~~l~v~~~~~~~~~~~~l~~~-~~~---~ 551 (774)
..+.|+.|+...++++.+. ... .+..++-- ++ .|+++-. +.|++|+++. .+ +... .+. .
T Consensus 167 ~~~~v~~~d~~~g~~~~~~--~~~-~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~--~~---l~~~~~~~~~~~ 238 (305)
T 3dr2_A 167 AHHSVYRLPPDGSPLQRMA--DLD-HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD--GA---LHDRRHFASVPD 238 (305)
T ss_dssp SCEEEEEECSSSCCCEEEE--EES-SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET--TE---EEEEEEEECCSS
T ss_pred CCCeEEEEcCCCCcEEEEe--cCC-CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC--CC---ccCCeEEEECCC
Confidence 3577877776556666554 332 23344432 34 4666543 5777777541 11 2111 000 1
Q ss_pred cceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEe
Q 004094 552 GHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEIL 605 (774)
Q Consensus 552 ~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l 605 (774)
..+..+.+...|+ |++++ ..+ +.+|+++...+..+.-. ..++++.|-
T Consensus 239 ~~pdgi~~d~~G~-lwv~~-~~g--v~~~~~~g~~~~~~~~~---~~~~~~~f~ 285 (305)
T 3dr2_A 239 GLPDGFCVDRGGW-LWSSS-GTG--VCVFDSDGQLLGHIPTP---GTASNCTFD 285 (305)
T ss_dssp SCCCSEEECTTSC-EEECC-SSE--EEEECTTSCEEEEEECS---SCCCEEEEC
T ss_pred CCCCeEEECCCCC-EEEec-CCc--EEEECCCCCEEEEEECC---CceeEEEEe
Confidence 1112233444566 88888 555 55688866655555422 234455444
No 215
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=68.15 E-value=70 Score=31.58 Aligned_cols=162 Identities=14% Similarity=0.102 Sum_probs=81.7
Q ss_pred EEEEEECCC--ceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeec
Q 004094 431 FVRLLDDQT--FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETK 508 (774)
Q Consensus 431 ~l~l~d~~~--~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~ 508 (774)
.+..+|+.+ |+.+.....+... .++.. + +..++++|-.. ......++.|+...++.+.+.....+
T Consensus 25 ~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~--~---~~~lyv~GG~~------~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 25 SCRYFNPKDYSWTDIRCPFEKRRD--AACVF--W---DNVVYILGGSQ------LFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp SEEEEETTTTEEEECCCCSCCCBS--CEEEE--E---TTEEEEECCBS------SSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred eEEEecCCCCCEecCCCCCcccce--eEEEE--E---CCEEEEEeCCC------CCCcceEEEEeCCCCeEEECCCCCcc
Confidence 567788865 6555432222111 22221 2 24567776532 22446888998888888777543332
Q ss_pred CceeEeccccCeEEEEECC--------EEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEE-Eec--------
Q 004094 509 GAVYSLNAFNGKLLAAINQ--------KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVV-GDL-------- 571 (774)
Q Consensus 509 g~v~~i~~~~~~lv~~~g~--------~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~v-gD~-------- 571 (774)
-.-.+++.++++|++.-|. .+.+|+. . ..+ +.....+...-...+..+.+++|++ |-.
T Consensus 92 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~--~-~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 92 RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDT--R-TES--WHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEET--T-TTE--EEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCE
T ss_pred ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeC--C-CCc--eEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCccc
Confidence 2233445567777665542 2555542 1 112 2222222111111222345665554 422
Q ss_pred -cccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEE
Q 004094 572 -MKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLG 612 (774)
Q Consensus 572 -~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~ 612 (774)
... +..|+.+.++-..++.-+.++.-.++..+++..+++
T Consensus 167 ~~~~--~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 206 (306)
T 3ii7_A 167 VLNS--CEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAV 206 (306)
T ss_dssp ECCC--EEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred ccce--EEEeCCCCCeEEECCCccchhhcceEEEECCEEEEE
Confidence 333 456888888888887656666554555554333443
No 216
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=67.98 E-value=4.7 Score=33.39 Aligned_cols=29 Identities=10% Similarity=0.299 Sum_probs=25.6
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Q 004094 745 SRTRMDEISKTMNVSVEELCKRVEELTRL 773 (774)
Q Consensus 745 ~~~~q~~i~~~~~~~~~~i~~~l~~l~~~ 773 (774)
....+++||++.|++++|+.++|.+...|
T Consensus 68 ~~SR~~RIA~GSG~~v~eVn~LLkqf~~m 96 (105)
T 1hq1_A 68 KGSRKRRIAAGSGMQVQDVNRLLKQFDDM 96 (105)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999987654
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=67.31 E-value=1.2e+02 Score=31.54 Aligned_cols=157 Identities=11% Similarity=-0.010 Sum_probs=75.9
Q ss_pred cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCC
Q 004094 400 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLP 479 (774)
Q Consensus 400 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~ 479 (774)
.|..++++++.++|++-.. ...|+.+|+.+.+....... .+... + .+..++. +++++...
T Consensus 132 ~P~~la~d~~g~lyv~d~~----------~~~I~~id~~~g~~~~~~~~--~~~~~-i---a~~~~g~-~l~~~d~~--- 191 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRD----------DPRVRLISVDDNKVTTVHPG--FKGGK-P---AVTKDKQ-RVYSIGWE--- 191 (409)
T ss_dssp CEEEEEECSTTEEEEEETT----------TTEEEEEETTTTEEEEEEET--CCBCB-C---EECTTSS-EEEEEBSS---
T ss_pred CceEEEEeCCCCEEEEecC----------CCcEEEEECCCCEEEEeecc--CCCCc-e---eEecCCC-cEEEEecC---
Confidence 5778888887775554331 13789999977655433222 22222 2 2333333 44444311
Q ss_pred CCCCCcceEEEEEEEeCC-eEEEEEEEe--ecCceeEec--cccCeEEEEEC-CEEEEEEeeecCCCchhhhhhcccc--
Q 004094 480 EENEPTKGRILVFIVEDG-KLQLIAEKE--TKGAVYSLN--AFNGKLLAAIN-QKIQLYKWMLRDDGTRELQSECGHH-- 551 (774)
Q Consensus 480 ~e~~~~~Grl~v~~i~~~-kl~~~~~~~--~~g~v~~i~--~~~~~lv~~~g-~~l~v~~~~~~~~~~~~l~~~~~~~-- 551 (774)
..++|+.|+...+ ..+.+.... ....+.+++ +-++.|+++.. .+|+.++.+ .+...+.......
T Consensus 192 -----~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~---~~~~~~~~~~~~~g~ 263 (409)
T 3hrp_A 192 -----GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVK---TQEVTLIKQLELSGS 263 (409)
T ss_dssp -----TTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETT---TCCEEEEEECCCCSC
T ss_pred -----CCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECC---CCCEEEEecccccCC
Confidence 1127777776533 233332111 123344444 33677877655 345554432 1211221000000
Q ss_pred --cceE-EEEEEEeCCEEEEEeccccEEEEEEEccCC
Q 004094 552 --GHIL-ALYVQTRGDFIVVGDLMKSISLLIYKHEEG 585 (774)
Q Consensus 552 --~~~~-~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~ 585 (774)
..+. .+.++-.++.++++|..... +++|+.+..
T Consensus 264 ~~~~P~~~ia~~p~~g~lyv~d~~~~~-I~~~~~~g~ 299 (409)
T 3hrp_A 264 LGTNPGPYLIYYFVDSNFYMSDQNLSS-VYKITPDGE 299 (409)
T ss_dssp CCCSSCCEEEEETTTTEEEEEETTTTE-EEEECTTCC
T ss_pred CCCCccccEEEeCCCCEEEEEeCCCCE-EEEEecCCC
Confidence 0111 23333336799999988774 567876554
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=65.29 E-value=1.2e+02 Score=30.42 Aligned_cols=184 Identities=11% Similarity=-0.028 Sum_probs=90.8
Q ss_pred EEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCC---CceEEEEEEEEEcCCCceE
Q 004094 393 RSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDT---FEYGCSILSCSFSDDSNVY 469 (774)
Q Consensus 393 ~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~---~E~~~si~~~~~~~~~~~~ 469 (774)
+.+.++..|..+++.++.+.+ +++ .. .|..+|+.+.+...-...+. ...+.++ .+..+++
T Consensus 84 ~~~~~~~~v~~i~~~~dg~l~-v~~-~~----------gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i---~~d~~G~-- 146 (326)
T 2ghs_A 84 TVHALPFMGSALAKISDSKQL-IAS-DD----------GLFLRDTATGVLTLHAELESDLPGNRSNDG---RMHPSGA-- 146 (326)
T ss_dssp EEEECSSCEEEEEEEETTEEE-EEE-TT----------EEEEEETTTCCEEEEECSSTTCTTEEEEEE---EECTTSC--
T ss_pred EEEECCCcceEEEEeCCCeEE-EEE-CC----------CEEEEECCCCcEEEEeeCCCCCCCCCCCCE---EECCCCC--
Confidence 345556778888888876644 444 21 48888987665432222222 1233433 3444333
Q ss_pred EEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cC-eEEEEE--CCEEEEEEeeecCCCchhhh
Q 004094 470 YCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAI--NQKIQLYKWMLRDDGTRELQ 545 (774)
Q Consensus 470 i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~-~lv~~~--g~~l~v~~~~~~~~~~~~l~ 545 (774)
+.+|+.... .....|+|+.++ +++++.+... ...+..++-- ++ .|+++. ++.|++|+++. ..+ .++.
T Consensus 147 l~v~~~~~~---~~~~~~~l~~~~--~g~~~~~~~~--~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~-~~G-l~~~ 217 (326)
T 2ghs_A 147 LWIGTMGRK---AETGAGSIYHVA--KGKVTKLFAD--ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA-RTG-LPTG 217 (326)
T ss_dssp EEEEEEETT---CCTTCEEEEEEE--TTEEEEEEEE--ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT-TTC-CBSS
T ss_pred EEEEeCCCc---CCCCceEEEEEe--CCcEEEeeCC--CcccCCeEEcCCCCEEEEEECCCCEEEEEEccc-ccC-Cccc
Confidence 556664321 124568898888 5676654321 2234455433 34 465654 36788777531 122 0111
Q ss_pred h---hcccc-cceEEEEEEEe-CCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEe
Q 004094 546 S---ECGHH-GHILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEIL 605 (774)
Q Consensus 546 ~---~~~~~-~~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l 605 (774)
. ...+. ....+-.+... +..+++++...+ .+.+|+.+...+..+.- ....++++.|-
T Consensus 218 ~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~-~v~~~d~~g~~~~~i~~--~~~~~~~~af~ 279 (326)
T 2ghs_A 218 KAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG-AVDRYDTDGNHIARYEV--PGKQTTCPAFI 279 (326)
T ss_dssp CCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT-EEEEECTTCCEEEEEEC--SCSBEEEEEEE
T ss_pred CceEEEECCCCCCCCCeeEECCCCCEEEEEeCCC-EEEEECCCCCEEEEEEC--CCCCcEEEEEe
Confidence 1 01111 11123344443 235778876533 25567775444444431 12356666554
No 219
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=64.75 E-value=59 Score=32.46 Aligned_cols=138 Identities=15% Similarity=0.216 Sum_probs=67.0
Q ss_pred ceEEEEEeeeeC-CCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEECC---------EEEEEEeee
Q 004094 467 NVYYCVGTAYVL-PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQ---------KIQLYKWML 536 (774)
Q Consensus 467 ~~~i~VGT~~~~-~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g~---------~l~v~~~~~ 536 (774)
...+++|-.... .+........++.|+...++.+.+.....+-.-.+++.++++|++.-|. .+.+|+ .
T Consensus 57 ~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd--~ 134 (318)
T 2woz_A 57 NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYD--P 134 (318)
T ss_dssp SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEE--T
T ss_pred CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEe--C
Confidence 567777763211 0111122334788887777777654332222223555567887655442 234433 2
Q ss_pred cCCCchhhhhhcccccceEEEEEEEeCCEEEE-Eec------cccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCe
Q 004094 537 RDDGTRELQSECGHHGHILALYVQTRGDFIVV-GDL------MKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI 609 (774)
Q Consensus 537 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~v-gD~------~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~ 609 (774)
. .. ++.....+...-...+..+.+++|++ |-. ... +..|+.+.++-..++.-+.+|...++..+++..
T Consensus 135 ~-~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~--~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i 209 (318)
T 2woz_A 135 V-AA--KWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR--VFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKI 209 (318)
T ss_dssp T-TT--EEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC--EEEEETTTTEEEEECCCSSCCBSCEEEEETTEE
T ss_pred C-CC--CEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce--EEEEcCCCCEEEECCCCCCCcccceEEEECCEE
Confidence 2 12 22222222221122223346666654 422 333 456888888888887666667655555554333
Q ss_pred EE
Q 004094 610 YL 611 (774)
Q Consensus 610 ~l 611 (774)
++
T Consensus 210 yv 211 (318)
T 2woz_A 210 VI 211 (318)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 220
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=64.10 E-value=1.1e+02 Score=29.89 Aligned_cols=89 Identities=9% Similarity=-0.011 Sum_probs=52.4
Q ss_pred EEEEeCCeEEEEEEcCCCCeEEEEEeCCCcccE------EEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEE
Q 004094 371 LAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRR------ICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFIS 444 (774)
Q Consensus 371 l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~------i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~ 444 (774)
|+.++ +.=++..+++...=..++|+++..++. +.|. +...| +.+.. ...|..|||.+.+++.
T Consensus 148 L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly-anvw~---------s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 148 LVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIY-ANIWH---------SSDVLEIDPATGTVVG 215 (268)
T ss_dssp EEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE-EEETT---------CSEEEEECTTTCBEEE
T ss_pred EEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEE-EEECC---------CCeEEEEeCCCCcEEE
Confidence 44443 344566777655446788888664443 3444 33444 33322 2389999999999999
Q ss_pred EEECC------------CCceEEEEEEEEEcCCCceEEEEEe
Q 004094 445 TYPLD------------TFEYGCSILSCSFSDDSNVYYCVGT 474 (774)
Q Consensus 445 ~~~~~------------~~E~~~si~~~~~~~~~~~~i~VGT 474 (774)
.+.+. .....+.|+ +..+.+.+++-|-
T Consensus 216 ~Idl~~L~~~~~~~~~~~~~vlNGIA---~dp~~~rlfVTGK 254 (268)
T 3nok_A 216 VIDASALTRAVAGQVTNPEAVLNGIA---VEPGSGRIFMTGK 254 (268)
T ss_dssp EEECHHHHHHHTTTCCCTTCCEEEEE---ECTTTCCEEEEET
T ss_pred EEECCCCcccccccccCcCCceEEEE---EcCCCCEEEEeCC
Confidence 98874 223445554 3444566666443
No 221
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=64.02 E-value=2e+02 Score=32.83 Aligned_cols=143 Identities=11% Similarity=-0.012 Sum_probs=72.6
Q ss_pred CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE-------e-ecCceeEeccc-cCeEEEEE-CCEEEEEEee
Q 004094 466 SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK-------E-TKGAVYSLNAF-NGKLLAAI-NQKIQLYKWM 535 (774)
Q Consensus 466 ~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~-------~-~~g~v~~i~~~-~~~lv~~~-g~~l~v~~~~ 535 (774)
+..-+.|||.. |-|+.|+....+++..... . ....|++++.- +|.|.++. ++-|..|+..
T Consensus 322 ~~g~lWigt~~----------~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~ 391 (781)
T 3v9f_A 322 SFNNIWIGTWG----------GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENG 391 (781)
T ss_dssp SSCCEEEEEBS----------SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETT
T ss_pred CCCCEEEEecC----------CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECC
Confidence 34558889832 3344554433344433211 1 23568888876 47898888 6778776531
Q ss_pred ecCCCch-hhhhhcccccceEEEEEEEe-CCEEEEEeccccEEEEEEEccCCeEEEEecc-CCcceeEEEEEeeCCeEEE
Q 004094 536 LRDDGTR-ELQSECGHHGHILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEERARD-YNANWMSAVEILDDDIYLG 612 (774)
Q Consensus 536 ~~~~~~~-~l~~~~~~~~~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D-~~~~~v~~~~~l~~~~~l~ 612 (774)
.+.. .+...... ....+.++... ++.|++|+...++ ++|+...+++.....+ .....+.++..-.++.+.+
T Consensus 392 ---~~~~~~~~~~~~~-~~~~v~~i~~d~~g~lWigt~~~Gl--~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi 465 (781)
T 3v9f_A 392 ---KRVAIYNKENREL-LSNSVLCSLKDSEGNLWFGTYLGNI--SYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI 465 (781)
T ss_dssp ---EEEEECC-----C-CCSBEEEEEECTTSCEEEEETTEEE--EEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE
T ss_pred ---CCeEEEccCCCCC-CCcceEEEEECCCCCEEEEeccCCE--EEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE
Confidence 1111 11000000 01123445444 5689999987885 4577766777665432 1223444443222345444
Q ss_pred EccCCcEEEEeeC
Q 004094 613 AENNFNLFTVRKN 625 (774)
Q Consensus 613 ~D~~gnl~~l~~~ 625 (774)
+.. +.|+.+...
T Consensus 466 gt~-~Gl~~~~~~ 477 (781)
T 3v9f_A 466 GTH-AGVFVIDLA 477 (781)
T ss_dssp EET-TEEEEEESS
T ss_pred EEC-CceEEEeCC
Confidence 333 567766643
No 222
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=63.11 E-value=1.2e+02 Score=29.70 Aligned_cols=181 Identities=10% Similarity=0.072 Sum_probs=93.9
Q ss_pred eEEEEEecC--CEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEe-CCCcEEEEEEecCCCccccceeeec
Q 004094 235 IAAVGMWTD--ISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCAL-GDGHLLNFLLNMKTGELTDRKKVSL 311 (774)
Q Consensus 235 ~~~vg~~~~--~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl-~~G~l~~y~~~~~~~~l~~~~~~~l 311 (774)
.+.+++-.. +.|..+++.+.+.+....++.....+-+.+. ++ .|++.. +++.+.+|... +. +..+....
T Consensus 54 ~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~--~ly~ltw~~~~v~v~D~~--t~--~~~~ti~~ 125 (262)
T 3nol_A 54 YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KD--KIVGLTWKNGLGFVWNIR--NL--RQVRSFNY 125 (262)
T ss_dssp EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TT--EEEEEESSSSEEEEEETT--TC--CEEEEEEC
T ss_pred EEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CC--EEEEEEeeCCEEEEEECc--cC--cEEEEEEC
Confidence 455655433 4899999998888776666543334444332 33 455544 57777766533 32 23334455
Q ss_pred CCCCeEEEEEEeCCcceEEEecCCCeEEEec-C-Cc-EEEeeecc--cCceeeecccCCCCCCcEEEEe-CCeEEEEEEc
Q 004094 312 GTQPITLRTFSSKNTTHVFAASDRPTVIYSS-N-KK-LLYSNVNL--KEVSHMCPFNSAAFPDSLAIAK-EGELTIGTID 385 (774)
Q Consensus 312 G~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~-~-~~-~~~~~~~~--~~i~~~~~f~~~~~~~~l~~~~-~~~l~i~~l~ 385 (774)
+..+.-|.+ +...++++.....+...+ . .+ +...++.. .++..+..+ .+.++-+++. -..=.|..++
T Consensus 126 ~~eG~glt~----dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL---e~~~G~lyan~w~~~~I~vID 198 (262)
T 3nol_A 126 DGEGWGLTH----NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNEL---EWVDGEIFANVWQTNKIVRID 198 (262)
T ss_dssp SSCCCCEEE----CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEE---EEETTEEEEEETTSSEEEEEC
T ss_pred CCCceEEec----CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccccee---EEECCEEEEEEccCCeEEEEE
Confidence 545544542 223444443222222222 1 11 22222221 111111111 1113444443 1222667788
Q ss_pred CCCCeEEEEEeCC-------------CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEE
Q 004094 386 DIQKLHIRSIPLG-------------EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLD 436 (774)
Q Consensus 386 ~~~~~~~~~i~l~-------------~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d 436 (774)
....-..++|++. ..|.-|||+|..+.+.|.+-.. ...+.|+|..
T Consensus 199 p~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W------p~~~ev~~~~ 256 (262)
T 3nol_A 199 PETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW------PKVFEITLTQ 256 (262)
T ss_dssp TTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC------SEEEEEEEEE
T ss_pred CCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC------CceEEEEEec
Confidence 7766677777774 4678899999999988888654 2345566643
No 223
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=62.53 E-value=6.6 Score=33.35 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=25.7
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Q 004094 745 SRTRMDEISKTMNVSVEELCKRVEELTRL 773 (774)
Q Consensus 745 ~~~~q~~i~~~~~~~~~~i~~~l~~l~~~ 773 (774)
+...+++||++.|++++|+.++|.+...|
T Consensus 77 ~~SR~~RIA~GSG~~v~eVn~LLkqf~~m 105 (119)
T 2jqe_A 77 DSSRIRRIAIGSGTSPQEVKELLNYYKTM 105 (119)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999987654
No 224
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=62.19 E-value=73 Score=31.60 Aligned_cols=134 Identities=15% Similarity=0.055 Sum_probs=67.0
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEEC-------CEEEEEEeeecCC
Q 004094 467 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN-------QKIQLYKWMLRDD 539 (774)
Q Consensus 467 ~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g-------~~l~v~~~~~~~~ 539 (774)
...+++|-.... .....++.|+...++.+.+......-.-.+.+.++++|++.-| +.+.+|+.. .
T Consensus 122 ~~iyv~GG~~~~-----~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~---~ 193 (308)
T 1zgk_A 122 GHIYAVGGSHGC-----IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPE---R 193 (308)
T ss_dssp TEEEEECCEETT-----EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETT---T
T ss_pred CEEEEEcCCCCC-----cccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCC---C
Confidence 456777653211 1234678888877777766533222222344445777666544 245555531 1
Q ss_pred CchhhhhhcccccceEEEEEEEeCCEEEE-Eec-----cccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEE
Q 004094 540 GTRELQSECGHHGHILALYVQTRGDFIVV-GDL-----MKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLG 612 (774)
Q Consensus 540 ~~~~l~~~~~~~~~~~~~~l~~~~~~I~v-gD~-----~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~ 612 (774)
.+++ ....+...-...+..+.+++|++ |-. ... +..|+.+.++-..+..-+.++...++..+++..++.
T Consensus 194 ~~W~--~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~--v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 268 (308)
T 1zgk_A 194 NEWR--MITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNS--VERYDVETETWTFVAPMKHRRSALGITVHQGRIYVL 268 (308)
T ss_dssp TEEE--ECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCC--EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred CeEe--eCCCCCCccccceEEEECCEEEEEeCCCCCCccce--EEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEE
Confidence 2222 11111111111223345666554 432 233 557888888888887666666554555554333443
No 225
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=59.34 E-value=7.2 Score=32.54 Aligned_cols=28 Identities=14% Similarity=0.347 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcc
Q 004094 746 RTRMDEISKTMNVSVEELCKRVEELTRL 773 (774)
Q Consensus 746 ~~~q~~i~~~~~~~~~~i~~~l~~l~~~ 773 (774)
...+++||++.|++++|+.++|.+...+
T Consensus 75 ~SR~~RIA~GSG~~v~eVn~LLkqf~~m 102 (109)
T 1qb2_A 75 PGRIQRVARGSGVSTRDVQELLTQYTKF 102 (109)
T ss_dssp THHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999987754
No 226
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=59.08 E-value=2.2e+02 Score=31.64 Aligned_cols=222 Identities=9% Similarity=-0.010 Sum_probs=100.5
Q ss_pred cEEEEeCCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC
Q 004094 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 449 (774)
Q Consensus 370 ~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~ 449 (774)
.++++..+.++...++....-....++-...|..+.|++..+.+.++-... ..|.-+++........+.-.
T Consensus 11 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~---------~~I~r~~~~g~~~~~~v~~~ 81 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSE---------EAIKRTEFNKTESVQNVVVS 81 (619)
T ss_dssp CEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTT---------TEEEEEEC-----CEEEECS
T ss_pred eEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCC---------CeEEEEEccCCCceEEEEeC
Confidence 356677777776555532111111222234688899998777655553321 24555554322110011111
Q ss_pred CCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEec--cccCeEEEEE-C
Q 004094 450 TFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLN--AFNGKLLAAI-N 526 (774)
Q Consensus 450 ~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~--~~~~~lv~~~-g 526 (774)
.-..+..++ +...+...++.- ...++|.+++.+....+.+....+.. +.+|+ +.+|+|+++- |
T Consensus 82 ~~~~P~GlA---vD~~~~~ly~~d----------~~~~~I~v~~~dG~~~~~l~~~~l~~-P~~Iavdp~~g~ly~tD~g 147 (619)
T 3s94_A 82 GLLSPDGLA---CDWLGEKLYWTD----------SETNRIEVSNLDGSLRKVLFWQELDQ-PRAIALDPSSGFMYWTDWG 147 (619)
T ss_dssp SCSCEEEEE---EETTTTEEEEEE----------TTTTEEEEEETTSCSCEEEECSSCSC-CCCEEEETTTTEEEEEECS
T ss_pred CCCCcCeEE---EEecCCEEEEEe----------CCCCEEEEEECCCCCEEEEEeCCCCC-CceEEEecCCCeEEEeccC
Confidence 113344443 222223333321 13477777776544444444333333 44444 3568887775 3
Q ss_pred --CEEEEEEeeecCCCchh--hhhhcccccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEec--cCCcceeE
Q 004094 527 --QKIQLYKWMLRDDGTRE--LQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERAR--DYNANWMS 600 (774)
Q Consensus 527 --~~l~v~~~~~~~~~~~~--l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~--D~~~~~v~ 600 (774)
.+|....+ +|... +.... ...+..+.++..+++|+++|..... +.+++.+......+.. -..|..
T Consensus 148 ~~~~I~r~~~----dG~~~~~l~~~~--~~~P~Glald~~~~~LY~aD~~~~~-I~~~~~dG~~~~~~~~~~~~~P~g-- 218 (619)
T 3s94_A 148 EVPKIERAGM----DGSSRFIIINSE--IYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDGTNRQAVVKGSLPHPFA-- 218 (619)
T ss_dssp SSCEEEEEET----TSCSCEEEECSS--CSSEEEEEEETTTTEEEEEETTTCC-EEEESSSCCEEC---------CCC--
T ss_pred CCCEEEEEEC----CCCceEEEEeCC--CCCCcEEEEEccCCEEEEEeCCCCe-EEEecCCCCccEEEEeCCCCCceE--
Confidence 45555443 23211 21110 1123344444457899999987652 4456655433322322 123332
Q ss_pred EEEEeeCCeEEEEcc-CCcEEEEeeC
Q 004094 601 AVEILDDDIYLGAEN-NFNLFTVRKN 625 (774)
Q Consensus 601 ~~~~l~~~~~l~~D~-~gnl~~l~~~ 625 (774)
+. ++++.+..+|. .+.++.+...
T Consensus 219 -i~-~~~~~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 219 -LT-LFEDILYWTDWSTHSILACNKY 242 (619)
T ss_dssp -EE-ESSSEEEEECTTTCSEEEEESS
T ss_pred -EE-EeCCEEEEecCCCCEEEEEECC
Confidence 22 24566777775 4556666653
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=57.39 E-value=1.5e+02 Score=29.10 Aligned_cols=160 Identities=10% Similarity=0.031 Sum_probs=79.7
Q ss_pred EEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEee-cC
Q 004094 431 FVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKET-KG 509 (774)
Q Consensus 431 ~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~-~g 509 (774)
.|..+|+. .+.+..+.... ..+.++. .. ....+.|||. .|.|+.|+.. ++..... .. ..
T Consensus 118 ~l~~~d~~-g~~~~~~~~~~-~~~~~~~---~~--~~g~l~vgt~----------~~~l~~~d~~-g~~~~~~--~~~~~ 177 (330)
T 3hxj_A 118 HLYAINTD-GTEKWRFKTKK-AIYATPI---VS--EDGTIYVGSN----------DNYLYAINPD-GTEKWRF--KTNDA 177 (330)
T ss_dssp EEEEECTT-SCEEEEEECSS-CCCSCCE---EC--TTSCEEEECT----------TSEEEEECTT-SCEEEEE--ECSSC
T ss_pred EEEEEcCC-CCEEEEEcCCC-ceeeeeE---Ec--CCCEEEEEcC----------CCEEEEECCC-CCEeEEE--ecCCC
Confidence 56667776 55555555432 2222222 12 2334777772 3677777665 4432222 22 23
Q ss_pred ceeEeccc-cCeEEEEECCEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeC-CEEEEEeccccEEEEEEEccCCeE
Q 004094 510 AVYSLNAF-NGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRG-DFIVVGDLMKSISLLIYKHEEGAI 587 (774)
Q Consensus 510 ~v~~i~~~-~~~lv~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~I~vgD~~~Sv~~~~~~~~~~~l 587 (774)
.+.++..- +|.|+++. ..|+.++ . +++....... . ...+.++...+ +.|++|+...++. .|+.+...+
T Consensus 178 ~~~~~~~d~~g~l~v~t-~~l~~~d---~-~g~~~~~~~~--~-~~~~~~~~~~~~g~l~v~t~~~gl~--~~~~~g~~~ 247 (330)
T 3hxj_A 178 ITSAASIGKDGTIYFGS-DKVYAIN---P-DGTEKWNFYA--G-YWTVTRPAISEDGTIYVTSLDGHLY--AINPDGTEK 247 (330)
T ss_dssp CCSCCEECTTCCEEEES-SSEEEEC---T-TSCEEEEECC--S-SCCCSCCEECTTSCEEEEETTTEEE--EECTTSCEE
T ss_pred ceeeeEEcCCCEEEEEe-CEEEEEC---C-CCcEEEEEcc--C-CcceeceEECCCCeEEEEcCCCeEE--EECCCCCEe
Confidence 44555542 67788887 7776654 1 2322111110 0 01122233343 3899999877765 456655555
Q ss_pred EEEeccCCcceeEEEEEee-CCeEEEEccCCcEEEEe
Q 004094 588 EERARDYNANWMSAVEILD-DDIYLGAENNFNLFTVR 623 (774)
Q Consensus 588 ~~~a~D~~~~~v~~~~~l~-~~~~l~~D~~gnl~~l~ 623 (774)
......... ..+ -.++ ++.+.++..+|.++.+.
T Consensus 248 ~~~~~~~~~--~~~-~~~~~~g~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 248 WRFKTGKRI--ESS-PVIGNTDTIYFGSYDGHLYAIN 281 (330)
T ss_dssp EEEECSSCC--CSC-CEECTTSCEEEECTTCEEEEEC
T ss_pred EEeeCCCCc--ccc-ceEcCCCeEEEecCCCCEEEEC
Confidence 443322111 111 1234 45676777788888775
No 228
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=57.12 E-value=1.8e+02 Score=29.86 Aligned_cols=188 Identities=10% Similarity=0.051 Sum_probs=88.4
Q ss_pred CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEec--CCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCce
Q 004094 376 EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQE--QSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEY 453 (774)
Q Consensus 376 ~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~--~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~ 453 (774)
++.+++..+.+..+......--+...+-+++++ ..+.+++.++.. ..|++.|.++.+.+.++.-... .
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D---------~TIkIWDl~TGk~l~tL~g~~~-~ 225 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIM---------NNIVIWNLKTGQLLKKMHIDDS-Y 225 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETT---------SEEEEEETTTCCEEEEEECCC---
T ss_pred CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCC---------CcEEEEECCCCcEEEEEcCCCc-c
Confidence 566777777554443222222222334455555 233444443332 3899999999998888753221 2
Q ss_pred EEEEEEEEEcCCCceEEEEEeeeeCC--CCCCCcceEEEEEEEeCCeEEEEEEEee----cCceeEeccccCeEEEE--E
Q 004094 454 GCSILSCSFSDDSNVYYCVGTAYVLP--EENEPTKGRILVFIVEDGKLQLIAEKET----KGAVYSLNAFNGKLLAA--I 525 (774)
Q Consensus 454 ~~si~~~~~~~~~~~~i~VGT~~~~~--~e~~~~~Grl~v~~i~~~kl~~~~~~~~----~g~v~~i~~~~~~lv~~--~ 525 (774)
+.++..+.|..+ ..+++++..-... -......+.+.+|+...+++..+....+ .+.+.+.. +.+.++++ .
T Consensus 226 v~~v~~vafSpd-G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~-~sg~~lASgS~ 303 (356)
T 2w18_A 226 QASVCHKAYSEM-GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGD-VKDHCAAAILT 303 (356)
T ss_dssp -CCCEEEEEEET-TEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEE-EETTEEEEEET
T ss_pred eeeeEEEEECCC-CCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccc-cCCCEEEEEcC
Confidence 234444445543 4555554421000 0011234778888777666443322211 12222222 12334444 3
Q ss_pred CCEEEEEEeeecCCCchhhhhhc-ccccceE-EEEEEEeCCEEEEEeccccEEEEEE
Q 004094 526 NQKIQLYKWMLRDDGTRELQSEC-GHHGHIL-ALYVQTRGDFIVVGDLMKSISLLIY 580 (774)
Q Consensus 526 g~~l~v~~~~~~~~~~~~l~~~~-~~~~~~~-~~~l~~~~~~I~vgD~~~Sv~~~~~ 580 (774)
.++|++|++. .+ ++.... .+..... .+..+-.|.+|+.|..-+.|.++.+
T Consensus 304 DgTIkIWDl~---tG--k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 304 SGTIAIWDLL---LG--QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TSCEEEEETT---TC--SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCcEEEEECC---CC--cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 5789998763 22 222111 1111111 1233345678888888777777543
No 229
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=56.52 E-value=89 Score=31.64 Aligned_cols=59 Identities=10% Similarity=-0.006 Sum_probs=31.7
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCce--eEeccccCeEEEEEC
Q 004094 467 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAV--YSLNAFNGKLLAAIN 526 (774)
Q Consensus 467 ~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v--~~i~~~~~~lv~~~g 526 (774)
..++++|-....+.........++.|+...++.+.+.... +.+- .+++.++++|++.-|
T Consensus 66 ~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG 126 (357)
T 2uvk_A 66 GNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGG 126 (357)
T ss_dssp TEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEEEEEC
T ss_pred CEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEEEEeC
Confidence 4577777542211111123456888888877777665433 1221 223347888776655
No 230
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=56.50 E-value=8.5 Score=33.07 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=25.5
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Q 004094 745 SRTRMDEISKTMNVSVEELCKRVEELTRL 773 (774)
Q Consensus 745 ~~~~q~~i~~~~~~~~~~i~~~l~~l~~~ 773 (774)
+...+++||++.|++++||.++|.+...+
T Consensus 87 ~~SRk~RIA~GSG~~v~eVn~LLkqf~qm 115 (129)
T 1mfq_C 87 QPGRIQRVARGSGVSTRDVQELLTQYTKF 115 (129)
T ss_dssp CTHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999999987654
No 231
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=55.91 E-value=2.7e+02 Score=31.71 Aligned_cols=137 Identities=12% Similarity=0.046 Sum_probs=73.8
Q ss_pred EEEEEECCCceEEEEE----ECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEE-
Q 004094 431 FVRLLDDQTFEFISTY----PLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEK- 505 (774)
Q Consensus 431 ~l~l~d~~~~~~i~~~----~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~- 505 (774)
.|..+|+.+.+. ..+ .+ +...+.++.. +....+.|||. .|-|+.|+...++++.....
T Consensus 384 Gl~~~~~~~~~~-~~~~~~~~~-~~~~v~~i~~-----d~~g~lWigt~----------~~Gl~~~~~~~~~~~~~~~~~ 446 (781)
T 3v9f_A 384 GINVFENGKRVA-IYNKENREL-LSNSVLCSLK-----DSEGNLWFGTY----------LGNISYYNTRLKKFQIIELEK 446 (781)
T ss_dssp CEEEEETTEEEE-ECC-----C-CCSBEEEEEE-----CTTSCEEEEET----------TEEEEEECSSSCEEEECCSTT
T ss_pred cEEEEECCCCeE-EEccCCCCC-CCcceEEEEE-----CCCCCEEEEec----------cCCEEEEcCCCCcEEEeccCC
Confidence 466677764322 111 11 2234555432 23445777883 24566666544555543211
Q ss_pred eecCceeEeccc-cCeEEEEECCEEEEEEeeecCCCchhhhhhcccc----cceEEEEEEEe-CCEEEEEeccccEEEEE
Q 004094 506 ETKGAVYSLNAF-NGKLLAAINQKIQLYKWMLRDDGTRELQSECGHH----GHILALYVQTR-GDFIVVGDLMKSISLLI 579 (774)
Q Consensus 506 ~~~g~v~~i~~~-~~~lv~~~g~~l~v~~~~~~~~~~~~l~~~~~~~----~~~~~~~l~~~-~~~I~vgD~~~Sv~~~~ 579 (774)
.....|+++..- +|.|.++...-|+.|+.. .+ ++....... ....+.++... ++.|++|+.-+++ ++
T Consensus 447 ~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~---~~--~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl--~~ 519 (781)
T 3v9f_A 447 NELLDVRVFYEDKNKKIWIGTHAGVFVIDLA---SK--KVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGV--GI 519 (781)
T ss_dssp TCCCCEEEEEECTTSEEEEEETTEEEEEESS---SS--SCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCE--EE
T ss_pred CCCCeEEEEEECCCCCEEEEECCceEEEeCC---CC--eEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCE--EE
Confidence 123578888776 678999988888776632 11 221111000 01234445443 4579999988885 56
Q ss_pred EEccCCeEEEEe
Q 004094 580 YKHEEGAIEERA 591 (774)
Q Consensus 580 ~~~~~~~l~~~a 591 (774)
|+.+.+++....
T Consensus 520 ~~~~~~~~~~~~ 531 (781)
T 3v9f_A 520 YTPDMQLVRKFN 531 (781)
T ss_dssp ECTTCCEEEEEC
T ss_pred EeCCCCeEEEcc
Confidence 787766766554
No 232
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=54.65 E-value=2.2e+02 Score=30.26 Aligned_cols=56 Identities=7% Similarity=-0.009 Sum_probs=35.4
Q ss_pred CCEEEEEECCCCCeeEEecCCC-ccCceeEEeeeecCeeEEEEEe------CCCcEEEEEEec
Q 004094 243 DISVRIFSLPDLNLITKEHLGG-EIIPRSVLLCAFEGISYLLCAL------GDGHLLNFLLNM 298 (774)
Q Consensus 243 ~~~i~i~~l~~~~~~~~~~l~~-~~~p~si~~~~~~~~~~L~vgl------~~G~l~~y~~~~ 298 (774)
.+.|.+|++.+.+.+.+..++. ...|+-+.+.--.+..+++++. -++.+.+|..+.
T Consensus 227 ~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 227 GNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp CCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 6899999998866655555542 2456666442112345666655 467888888774
No 233
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=53.74 E-value=2.9e+02 Score=31.35 Aligned_cols=114 Identities=19% Similarity=0.190 Sum_probs=61.5
Q ss_pred CceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeEEEEECCEEE
Q 004094 451 FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQ 530 (774)
Q Consensus 451 ~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g~~l~ 530 (774)
+..+.++.. +....|.|||. .| |+.|+....+++.. .......|.+++.-+|.|.++..+.|+
T Consensus 62 ~~~i~~i~~-----d~~g~lWigT~----------~G-l~~yd~~~~~f~~~-~~~~~~~i~~i~~~~g~lWigt~~Gl~ 124 (758)
T 3ott_A 62 NTRIYCGVI-----IDNTYLYMGTD----------NG-ILVYNYRADRYEQP-ETDFPTDVRTMALQGDTLWLGALNGLY 124 (758)
T ss_dssp SSCEEEEEE-----ETTTEEEEEET----------TE-EEEEETTTTEECCC-SCCCCSCEEEEEEETTEEEEEETTEEE
T ss_pred CceEEEEEE-----cCCCcEEEEeC----------CC-eEEEeCCCCEEECc-ccCCCceEEEEEecCCcEEEEcCCcce
Confidence 344555532 23568899982 24 56666554444321 011233566666557889999888776
Q ss_pred EEEeeecCCCchhhhhh----cccccceEEEEEEEe-CCEEEEEeccccEEEEEEEccCCeEEEE
Q 004094 531 LYKWMLRDDGTRELQSE----CGHHGHILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEER 590 (774)
Q Consensus 531 v~~~~~~~~~~~~l~~~----~~~~~~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~ 590 (774)
.|+. . .+ ++... .... ...+.++... ++.|++|+. ++ +++|+....++...
T Consensus 125 ~~~~--~-~~--~~~~~~~~~~~l~-~~~i~~i~~d~~g~lWigt~-~G--l~~~~~~~~~~~~~ 180 (758)
T 3ott_A 125 TYQL--Q-SR--KLTSFDTRRNGLP-NNTIYSIIRTKDNQIYVGTY-NG--LCRYIPSNGKFEGI 180 (758)
T ss_dssp EEET--T-TC--CEEEECHHHHCCS-CSCEEEEEECTTCCEEEEET-TE--EEEEETTTTEEEEE
T ss_pred eEeC--C-CC--eEEEeccCCCCcC-CCeEEEEEEcCCCCEEEEeC-CC--HhhCccCCCceEEe
Confidence 6552 1 11 22111 0011 1123444444 568899985 56 45788777766544
No 234
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=53.68 E-value=1.7e+02 Score=28.75 Aligned_cols=176 Identities=11% Similarity=0.052 Sum_probs=85.7
Q ss_pred eCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEE-CCCCceEEEEEEEEEcCCCceEEEEEe
Q 004094 396 PLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP-LDTFEYGCSILSCSFSDDSNVYYCVGT 474 (774)
Q Consensus 396 ~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~-~~~~E~~~si~~~~~~~~~~~~i~VGT 474 (774)
..+..|..++++++.+.++...... .....|..+|+.+.+....+. ......+.++. +..++ .+.|++
T Consensus 84 ~~~~~~~~i~~~~dg~l~v~~~~~~------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~---~d~~g--~l~v~~ 152 (333)
T 2dg1_A 84 SHKANPAAIKIHKDGRLFVCYLGDF------KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMV---FDSKG--GFYFTD 152 (333)
T ss_dssp CSSSSEEEEEECTTSCEEEEECTTS------SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEE---ECTTS--CEEEEE
T ss_pred CCCCCcceEEECCCCcEEEEeCCCC------CCCceEEEEeCCCCEEEEEEccCccCCcccceE---ECCCC--CEEEEe
Confidence 3456788999998877655443210 012368888887654332221 12333444443 44333 345555
Q ss_pred eeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cC-eEEEEE--CCEEEEEEeeecCCCchhhhh---h
Q 004094 475 AYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAI--NQKIQLYKWMLRDDGTRELQS---E 547 (774)
Q Consensus 475 ~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~-~lv~~~--g~~l~v~~~~~~~~~~~~l~~---~ 547 (774)
.... .....|+|+.++...++++.+... ...+.+++-- +| .|+++. ++.|++|+.+ .++. .+.. .
T Consensus 153 ~~~~---~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~--~~g~-~~~~~~~~ 224 (333)
T 2dg1_A 153 FRGY---STNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDEKVLWVTETTANRLHRIALE--DDGV-TIQPFGAT 224 (333)
T ss_dssp CCCB---TTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC--TTSS-SEEEEEEE
T ss_pred cccc---ccCCCceEEEEeCCCCEEEEeecC--CCcccceEECCCCCEEEEEeCCCCeEEEEEec--CCCc-Ccccccce
Confidence 3211 122457787776554566544321 2345555433 34 466665 4678877753 1221 1110 0
Q ss_pred --cccccceEEEEEEEe-CCEEEEEeccccEEEEEEEccCCeEEEEe
Q 004094 548 --CGHHGHILALYVQTR-GDFIVVGDLMKSISLLIYKHEEGAIEERA 591 (774)
Q Consensus 548 --~~~~~~~~~~~l~~~-~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a 591 (774)
........+..+... +..+++++...+ .+.+|+.+...+..+.
T Consensus 225 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-~v~~~d~~g~~~~~~~ 270 (333)
T 2dg1_A 225 IPYYFTGHEGPDSCCIDSDDNLYVAMYGQG-RVLVFNKRGYPIGQIL 270 (333)
T ss_dssp EEEECCSSSEEEEEEEBTTCCEEEEEETTT-EEEEECTTSCEEEEEE
T ss_pred EEEecCCCCCCCceEECCCCCEEEEEcCCC-EEEEECCCCCEEEEEE
Confidence 011111234444443 235788886544 2345777555554443
No 235
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=53.31 E-value=2.7e+02 Score=30.95 Aligned_cols=220 Identities=12% Similarity=0.031 Sum_probs=109.1
Q ss_pred cEEEEeCCeEEEEEEcCCCCeEEEEEeCCC--cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEE
Q 004094 370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGE--HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP 447 (774)
Q Consensus 370 ~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~--tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~ 447 (774)
.|+++..+.++...++... ....+|+.. .|..|+|++..+.+.++-... ..|.-++.........+.
T Consensus 8 ~Ll~s~~~~I~~i~l~~~~--~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~---------~~I~r~~~~g~~~~~v~~ 76 (628)
T 4a0p_A 8 FLLFSRRADIRRISLETNN--NNVAIPLTGVKEASALDFDVTDNRIYWTDISL---------KTISRAFMNGSALEHVVE 76 (628)
T ss_dssp EEEEEETTEEEEEESSCTT--CEEECCCCSCSCEEEEEEETTTTEEEEEETTT---------TEEEEEETTSCSCEEEEC
T ss_pred EEEEEeCCcEEEEECCCCC--cceEEEcCCCCceEEEEEECCCCEEEEEECCC---------CeEEEEECCCCCcEEEEe
Confidence 4667778888877776432 244566654 688899998777655554332 245555553211111111
Q ss_pred CCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEecc--ccCeEEEEE
Q 004094 448 LDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNA--FNGKLLAAI 525 (774)
Q Consensus 448 ~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~--~~~~lv~~~ 525 (774)
..-..+..++ +...+...++.- ...++|.+++.+....+.+....... +.+|+. -+|+|+++-
T Consensus 77 -~g~~~P~GlA---vD~~~~~LY~tD----------~~~~~I~v~~~dG~~~~~l~~~~l~~-P~~iavdp~~G~lY~tD 141 (628)
T 4a0p_A 77 -FGLDYPEGMA---VDWLGKNLYWAD----------TGTNRIEVSKLDGQHRQVLVWKDLDS-PRALALDPAEGFMYWTE 141 (628)
T ss_dssp -SSCSCCCEEE---EETTTTEEEEEE----------TTTTEEEEEETTSTTCEEEECSSCCC-EEEEEEETTTTEEEEEE
T ss_pred -CCCCCcceEE---EEeCCCEEEEEE----------CCCCEEEEEecCCCcEEEEEeCCCCC-cccEEEccCCCeEEEeC
Confidence 0112233333 121122332211 13467777776543333333333333 455553 468888876
Q ss_pred -C--CEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEE
Q 004094 526 -N--QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAV 602 (774)
Q Consensus 526 -g--~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~ 602 (774)
| .+|+...+ +|.. ......--..+..+.++..+++|+++|..... +.+++.+......++... + ...++
T Consensus 142 ~g~~~~I~r~~~----dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~-I~~~d~dG~~~~v~~~~l-~-~P~gl 213 (628)
T 4a0p_A 142 WGGKPKIDRAAM----DGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNL-IESSNMLGLNREVIADDL-P-HPFGL 213 (628)
T ss_dssp CSSSCEEEEEET----TSCS-CEEEECSCSSEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEEECC-S-CEEEE
T ss_pred CCCCCEEEEEeC----CCCc-eEEEECCCCCcceEEEccccCEEEEEECCCCE-EEEEcCCCCceEEeeccC-C-CceEE
Confidence 3 46655443 2321 11111111123344455557899999997763 455665543334444332 1 22233
Q ss_pred EEeeCCeEEEEcc-CCcEEEEee
Q 004094 603 EILDDDIYLGAEN-NFNLFTVRK 624 (774)
Q Consensus 603 ~~l~~~~~l~~D~-~gnl~~l~~ 624 (774)
.+ +++.+..+|. .+.|..+..
T Consensus 214 av-~~~~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 214 TQ-YQDYIYWTDWSRRSIERANK 235 (628)
T ss_dssp EE-ETTEEEEEETTTTEEEEEET
T ss_pred EE-ECCEEEEecCCCCEEEEEEC
Confidence 33 4577777776 455555553
No 236
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=53.16 E-value=1.8e+02 Score=28.75 Aligned_cols=134 Identities=11% Similarity=0.028 Sum_probs=67.3
Q ss_pred cceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cC-eEEEEE--CCEEEEEEeeecCCCchhhhhhcccccceEEEEEE
Q 004094 485 TKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NG-KLLAAI--NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQ 560 (774)
Q Consensus 485 ~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~-~lv~~~--g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 560 (774)
..|+|+.|+...++++.+.. .... +..|+.- +| .|+++- +++|++|.++....+..+. ...... +..+.+.
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~-~~~~-p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~--~~~~~g-P~gi~~d 237 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLK-ELHV-PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV--LVKIPN-PGNIKRN 237 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EESC-CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEE--EEECSS-EEEEEEC
T ss_pred CCceEEEEeCCCCEEEEecc-CCcc-CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccce--EEeCCC-CCCeEEC
Confidence 35899988776667665432 2222 2334322 33 476663 3688887753111111111 111222 2223333
Q ss_pred EeCCEEEEEeccc---------cEEEEEEEccCCeEEEEeccC-C-cceeEEEEEeeCCeEEEEcc-CCcEEEEeeC
Q 004094 561 TRGDFIVVGDLMK---------SISLLIYKHEEGAIEERARDY-N-ANWMSAVEILDDDIYLGAEN-NFNLFTVRKN 625 (774)
Q Consensus 561 ~~~~~I~vgD~~~---------Sv~~~~~~~~~~~l~~~a~D~-~-~~~v~~~~~l~~~~~l~~D~-~gnl~~l~~~ 625 (774)
..| .|+|++... .-.+++|+++...+..+.... . ..+++++.+ .++.+.+++. .+.|..++..
T Consensus 238 ~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 238 ADG-HFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TTS-CEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred CCC-CEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 334 588888762 345778888765555554221 1 234555544 5566666664 4556666654
No 237
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=51.36 E-value=1.9e+02 Score=28.65 Aligned_cols=140 Identities=11% Similarity=0.016 Sum_probs=74.2
Q ss_pred CceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEEEECCEEEEEEeeecCCCchh-
Q 004094 466 SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAINQKIQLYKWMLRDDGTRE- 543 (774)
Q Consensus 466 ~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~~g~~l~v~~~~~~~~~~~~- 543 (774)
+..++++++ ..|+|+.|+...++++.. ..++.|.++... +|.++++....|++++.+ .++.+
T Consensus 60 ~~~l~~~d~----------~~~~i~~~d~~~~~~~~~---~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~---~g~~~~ 123 (326)
T 2ghs_A 60 SGTAWWFNI----------LERELHELHLASGRKTVH---ALPFMGSALAKISDSKQLIASDDGLFLRDTA---TGVLTL 123 (326)
T ss_dssp TTEEEEEEG----------GGTEEEEEETTTTEEEEE---ECSSCEEEEEEEETTEEEEEETTEEEEEETT---TCCEEE
T ss_pred CCEEEEEEC----------CCCEEEEEECCCCcEEEE---ECCCcceEEEEeCCCeEEEEECCCEEEEECC---CCcEEE
Confidence 456666665 246888887766665532 346778888754 677888888887766532 22211
Q ss_pred hhhhcccccceEEEEEEEe-CCEEEEEecc-----ccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCC-eEEEEcc-
Q 004094 544 LQSECGHHGHILALYVQTR-GDFIVVGDLM-----KSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD-IYLGAEN- 615 (774)
Q Consensus 544 l~~~~~~~~~~~~~~l~~~-~~~I~vgD~~-----~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~-~~l~~D~- 615 (774)
+...........+..+.+. +..+++++.. ..-.+++++ +.++..+..+.. ......+-.++ .+.++|.
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~--~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS--IPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES--SEEEEEECTTSCEEEEEETT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc--ccCCeEEcCCCCEEEEEECC
Confidence 1111000011234445443 2357888863 234567777 355554432211 12233332233 3445554
Q ss_pred CCcEEEEeeC
Q 004094 616 NFNLFTVRKN 625 (774)
Q Consensus 616 ~gnl~~l~~~ 625 (774)
.+.|+.+.++
T Consensus 200 ~~~I~~~d~~ 209 (326)
T 2ghs_A 200 VNRLMRVPLD 209 (326)
T ss_dssp TCEEEEEEBC
T ss_pred CCEEEEEEcc
Confidence 5778888875
No 238
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=51.34 E-value=1.8e+02 Score=28.37 Aligned_cols=97 Identities=10% Similarity=0.025 Sum_probs=47.2
Q ss_pred ccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCC
Q 004094 401 PRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 480 (774)
Q Consensus 401 p~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~ 480 (774)
+.-.+++++.+.+++..... ..|..+++. .+ ...+... ...+.++. +..+++ ++|++.
T Consensus 47 ~egp~~~~~g~~l~~~d~~~---------~~i~~~~~~-g~-~~~~~~~-~~~~~gl~---~d~dG~--l~v~~~----- 104 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVG---------RRVLGWRED-GT-VDVLLDA-TAFTNGNA---VDAQQR--LVHCEH----- 104 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTT---------TEEEEEETT-SC-EEEEEES-CSCEEEEE---ECTTSC--EEEEET-----
T ss_pred ccCCeEeCCCCEEEEEECCC---------CEEEEEeCC-CC-EEEEeCC-CCccceee---ECCCCC--EEEEEC-----
Confidence 55678888887554443322 256666773 33 2333322 23344433 343333 455542
Q ss_pred CCCCcceEEEEEEEeCCeEEEEEEEee---cCceeEeccc-cCeEEEE
Q 004094 481 ENEPTKGRILVFIVEDGKLQLIAEKET---KGAVYSLNAF-NGKLLAA 524 (774)
Q Consensus 481 e~~~~~Grl~v~~i~~~kl~~~~~~~~---~g~v~~i~~~-~~~lv~~ 524 (774)
..++|+.|+.. ++++.+..... ...+..++.- +|.|+++
T Consensus 105 ----~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~t 147 (305)
T 3dr2_A 105 ----GRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFT 147 (305)
T ss_dssp ----TTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEE
T ss_pred ----CCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEe
Confidence 22577777653 55555442211 1123344433 6778774
No 239
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=50.98 E-value=94 Score=32.12 Aligned_cols=69 Identities=14% Similarity=0.023 Sum_probs=50.7
Q ss_pred EEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC
Q 004094 380 TIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD 449 (774)
Q Consensus 380 ~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~ 449 (774)
.+.-++....-.+.+|+++..| .++++|+.+.+.|+....+-.........|.++|+.+++.+.++...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~ 115 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP 115 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence 5556676666678899999999 89999999888887642110000112468999999999999998875
No 240
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=50.61 E-value=2.1e+02 Score=28.70 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=30.8
Q ss_pred CEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEE
Q 004094 564 DFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGA 613 (774)
Q Consensus 564 ~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~ 613 (774)
..|+++|...+- +.+|+++.+++..+..+....+.+++.+-.++.+.++
T Consensus 259 G~l~va~~~~~~-V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~ 307 (343)
T 2qe8_A 259 HNIYVGDLAHSA-IGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFD 307 (343)
T ss_dssp CCEEEEEGGGTE-EEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEE
T ss_pred CCEEEEccCCCe-EEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEE
Confidence 468899987763 5578874566777777665556666655434444333
No 241
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=50.00 E-value=1.5e+02 Score=29.25 Aligned_cols=119 Identities=16% Similarity=0.179 Sum_probs=59.2
Q ss_pred EEEEEEEeecCceeEeccc-cCeEEEEE--CCEEEEEEeeecCCCchhhhhhcccccceEEEEEEEe-CCEEEEEecc-c
Q 004094 499 LQLIAEKETKGAVYSLNAF-NGKLLAAI--NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTR-GDFIVVGDLM-K 573 (774)
Q Consensus 499 l~~~~~~~~~g~v~~i~~~-~~~lv~~~--g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~I~vgD~~-~ 573 (774)
.+++.......-+..++-- +|.|+++- +++|+.++ . ++. +........ .+..+... ++.++|+|.. +
T Consensus 22 ~~~~~~~p~~~~pegia~~~~g~lyv~d~~~~~I~~~d--~--~g~--~~~~~~~~~--~p~gia~~~dG~l~vad~~~~ 93 (306)
T 2p4o_A 22 AKIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSIT--P--DGN--QQIHATVEG--KVSGLAFTSNGDLVATGWNAD 93 (306)
T ss_dssp EEEEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEEC--T--TCC--EEEEEECSS--EEEEEEECTTSCEEEEEECTT
T ss_pred ceEeEeCCCCCCcceEEECCCCCEEEEeCCCCeEEEEC--C--CCc--eEEEEeCCC--CceeEEEcCCCcEEEEeccCC
Confidence 3344444333334444432 56676664 45665433 2 221 211111111 34445443 3357888864 3
Q ss_pred cEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEcc-CCcEEEEeeC
Q 004094 574 SISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAEN-NFNLFTVRKN 625 (774)
Q Consensus 574 Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~-~gnl~~l~~~ 625 (774)
+..+++|+...+++..++.-...+............++++|. .|.++.+...
T Consensus 94 ~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~ 146 (306)
T 2p4o_A 94 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV 146 (306)
T ss_dssp SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred cceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCC
Confidence 556777887677776665432223222333333445677885 7777777653
No 242
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=49.33 E-value=1.9e+02 Score=28.01 Aligned_cols=192 Identities=10% Similarity=0.062 Sum_probs=95.8
Q ss_pred cceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecC
Q 004094 233 SQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLG 312 (774)
Q Consensus 233 ~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG 312 (774)
.+.++++.. ++.|.+|+..+-+.+++........++++.+.+ +.. +++ ..++.+ +.+++ +|++.. ....+
T Consensus 5 ~~~lv~~~~-~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p--dG~-ilv-s~~~~V--~~~d~-~G~~~W--~~~~~ 74 (276)
T 3no2_A 5 QHLLVGGSG-WNKIAIINKDTKEIVWEYPLEKGWECNSVAATK--AGE-ILF-SYSKGA--KMITR-DGRELW--NIAAP 74 (276)
T ss_dssp CEEEEECTT-CSEEEEEETTTTEEEEEEECCTTCCCCEEEECT--TSC-EEE-ECBSEE--EEECT-TSCEEE--EEECC
T ss_pred CcEEEeeCC-CCEEEEEECCCCeEEEEeCCCccCCCcCeEECC--CCC-EEE-eCCCCE--EEECC-CCCEEE--EEcCC
Confidence 455666655 899999998788888776554212466666553 223 344 345544 45565 565322 22222
Q ss_pred CCCeEEEEEE-eCCcceEEEecC-CCeEE-EecCCcEE-EeeecccCcee-eecccC-CCCCC-cEEEEeCCeEEEEEEc
Q 004094 313 TQPITLRTFS-SKNTTHVFAASD-RPTVI-YSSNKKLL-YSNVNLKEVSH-MCPFNS-AAFPD-SLAIAKEGELTIGTID 385 (774)
Q Consensus 313 ~~pv~l~~~~-~~~~~~v~~~~~-~p~~l-~~~~~~~~-~~~~~~~~i~~-~~~f~~-~~~~~-~l~~~~~~~l~i~~l~ 385 (774)
.. ..+.... ..+.+.+++.+. ...++ +..++++. -.++.. .+.. ..+... ...++ .++++..+.=++..++
T Consensus 75 ~~-~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~-~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d 152 (276)
T 3no2_A 75 AG-CEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFET-GIERPHAQFRQINKNKKGNYLVPLFATSEVREIA 152 (276)
T ss_dssp TT-CEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECC-SCSSGGGSCSCCEECTTSCEEEEETTTTEEEEEC
T ss_pred CC-ccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccC-CCCcccccccCceECCCCCEEEEecCCCEEEEEC
Confidence 11 1222221 223334444443 33333 33455532 223221 1100 000000 01122 3555542222334454
Q ss_pred CCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEE
Q 004094 386 DIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYP 447 (774)
Q Consensus 386 ~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~ 447 (774)
...+ ...++..+..|..+...+..+.+++.... ..|..+|+.+++.+-++.
T Consensus 153 ~~G~-~~w~~~~~~~~~~~~~~~~g~~~v~~~~~----------~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 153 PNGQ-LLNSVKLSGTPFSSAFLDNGDCLVACGDA----------HCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp TTSC-EEEEEECSSCCCEEEECTTSCEEEECBTT----------SEEEEECTTTCCEEEEEE
T ss_pred CCCC-EEEEEECCCCccceeEcCCCCEEEEeCCC----------CeEEEEeCcCCcEEEEec
Confidence 4433 35556666678888888877766544322 379999999999988775
No 243
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=46.05 E-value=2e+02 Score=27.32 Aligned_cols=159 Identities=10% Similarity=0.029 Sum_probs=79.2
Q ss_pred CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeC
Q 004094 399 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 478 (774)
Q Consensus 399 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~ 478 (774)
..|+.+++++..+.+.++.... ..|..++...... ..+.-.....+..++ +..++..+++....
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~---------~~I~~~~~~g~~~-~~~~~~~~~~P~~i~---vd~~~g~lyv~~~~--- 142 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQL---------DRIEVAKMDGTQR-RVLFDTGLVNPRGIV---TDPVRGNLYWTDWN--- 142 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTT---------TEEEEEETTSCSC-EEEECSSCSSEEEEE---EETTTTEEEEEECC---
T ss_pred CCccEEEEEecCCeEEEEECCC---------CEEEEEEcCCCCE-EEEEECCCCCccEEE---EeeCCCEEEEEECC---
Confidence 5799999998766555554321 3677777643211 111111113344443 33222333332210
Q ss_pred CCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEecc--ccCeEEEEEC--CEEEEEEeeecCCCchhhhhhcccccce
Q 004094 479 PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNA--FNGKLLAAIN--QKIQLYKWMLRDDGTRELQSECGHHGHI 554 (774)
Q Consensus 479 ~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~--~~~~lv~~~g--~~l~v~~~~~~~~~~~~l~~~~~~~~~~ 554 (774)
...++|+.+.++....+.+..... +.+..++- -+++|+++.. ++|++++++ +. ..... .....
T Consensus 143 -----~~~~~I~~~~~dg~~~~~~~~~~~-~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~----g~-~~~~~--~~~~~ 209 (267)
T 1npe_A 143 -----RDNPKIETSHMDGTNRRILAQDNL-GLPNGLTFDAFSSQLCWVDAGTHRAECLNPA----QP-GRRKV--LEGLQ 209 (267)
T ss_dssp -----SSSCEEEEEETTSCCCEEEECTTC-SCEEEEEEETTTTEEEEEETTTTEEEEEETT----EE-EEEEE--EECCC
T ss_pred -----CCCcEEEEEecCCCCcEEEEECCC-CCCcEEEEcCCCCEEEEEECCCCEEEEEecC----CC-ceEEE--ecCCC
Confidence 124688887765433333322222 23455543 3567777654 577776642 21 11111 11122
Q ss_pred EEEEEEEeCCEEEEEeccccEEEEEEEccCCeE
Q 004094 555 LALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 587 (774)
Q Consensus 555 ~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l 587 (774)
.|..+...+++++++|....- +.+++.+.++.
T Consensus 210 ~P~gi~~d~~~lyva~~~~~~-v~~~d~~~g~~ 241 (267)
T 1npe_A 210 YPFAVTSYGKNLYYTDWKTNS-VIAMDLAISKE 241 (267)
T ss_dssp SEEEEEEETTEEEEEETTTTE-EEEEETTTTEE
T ss_pred CceEEEEeCCEEEEEECCCCe-EEEEeCCCCCc
Confidence 345566678999999987553 46678765543
No 244
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=45.03 E-value=2.7e+02 Score=28.45 Aligned_cols=154 Identities=10% Similarity=0.095 Sum_probs=78.5
Q ss_pred eEEEEEeeeeCCCC---CCCcceEEEEEEEe--CCeEEEEEEEe-----ecCceeEecccc---C--eEEEE----ECCE
Q 004094 468 VYYCVGTAYVLPEE---NEPTKGRILVFIVE--DGKLQLIAEKE-----TKGAVYSLNAFN---G--KLLAA----INQK 528 (774)
Q Consensus 468 ~~i~VGT~~~~~~e---~~~~~Grl~v~~i~--~~kl~~~~~~~-----~~g~v~~i~~~~---~--~lv~~----~g~~ 528 (774)
..+.+++...+|+- +....|+|++|+.+ +.+.+.+.... ...-++.|..+. | +|+++ .+..
T Consensus 61 G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ 140 (355)
T 3sre_A 61 GLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSST 140 (355)
T ss_dssp SEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCE
T ss_pred CeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCe
Confidence 34555554433321 11368999999987 34555444332 134677777653 3 45555 2568
Q ss_pred EEEEEeeecCCCchhhhhhcccccceEEEEEEEe-CCEEEEEecc----------------ccEEEEEEEccCCeEEEEe
Q 004094 529 IQLYKWMLRDDGTRELQSECGHHGHILALYVQTR-GDFIVVGDLM----------------KSISLLIYKHEEGAIEERA 591 (774)
Q Consensus 529 l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~I~vgD~~----------------~Sv~~~~~~~~~~~l~~~a 591 (774)
+.+|+++.. .+...+.....-.....+..+.+. ...+++++.. ..=.+++|++. ++..++
T Consensus 141 ielf~~d~~-~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~ 217 (355)
T 3sre_A 141 VEVFKFQEE-EKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVA 217 (355)
T ss_dssp EEEEEEETT-TTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEE
T ss_pred EEEEEEECC-CCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEee
Confidence 889888642 122223222111112234455543 3467777652 23457788763 555565
Q ss_pred ccCCcceeEEEEEeeC-CeEEEEcc-CCcEEEEeeCC
Q 004094 592 RDYNANWMSAVEILDD-DIYLGAEN-NFNLFTVRKNS 626 (774)
Q Consensus 592 ~D~~~~~v~~~~~l~~-~~~l~~D~-~gnl~~l~~~~ 626 (774)
.+..- ...+.+-.+ ..+.++|. .+.++.|+++.
T Consensus 218 ~~l~~--pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 218 EGFDF--ANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEESS--EEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cCCcc--cCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 55321 112222223 35667886 67889998874
No 245
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=44.62 E-value=2.3e+02 Score=27.43 Aligned_cols=108 Identities=9% Similarity=-0.014 Sum_probs=53.0
Q ss_pred cccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECC----CCceEEEEEEEEEcCCCceEEEEEee
Q 004094 400 HPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLD----TFEYGCSILSCSFSDDSNVYYCVGTA 475 (774)
Q Consensus 400 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~----~~E~~~si~~~~~~~~~~~~i~VGT~ 475 (774)
.|..++++++.+.+++. ... ...+.....|..+|+.+.+.. .+..+ ....+.++. +..++ ..+.|++.
T Consensus 19 ~~~~~~~~~~g~l~~~~-~~~--~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~---~~~~~-g~l~v~~~ 90 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVA-PEV--EVNGKPAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQ---CDRDA-NQLFVADM 90 (314)
T ss_dssp TCEEEEECTTSCEEEEE-TTC--EETTEECCEEEEECTTTCCEE-EEECCEETTEECCEEEEE---ECSSS-SEEEEEET
T ss_pred CccCceECCCCCEEEEE-ecc--ccCCCCCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEE---EecCC-CcEEEEEC
Confidence 57888998777766651 000 000012346888887665543 22221 112344433 33321 34555552
Q ss_pred eeCCCCCCCcceEEEEEEEeCCeEEEE-EEEe--e-cCceeEeccc-cCeEEEEEC
Q 004094 476 YVLPEENEPTKGRILVFIVEDGKLQLI-AEKE--T-KGAVYSLNAF-NGKLLAAIN 526 (774)
Q Consensus 476 ~~~~~e~~~~~Grl~v~~i~~~kl~~~-~~~~--~-~g~v~~i~~~-~~~lv~~~g 526 (774)
.+.|+.|+.. ++++.+ .... . ...+.+++.- +|.|+++..
T Consensus 91 ----------~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 135 (314)
T 1pjx_A 91 ----------RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAP 135 (314)
T ss_dssp ----------TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEEC
T ss_pred ----------CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEec
Confidence 1267777766 665543 2111 0 1235666543 577777764
No 246
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=39.42 E-value=25 Score=26.95 Aligned_cols=31 Identities=13% Similarity=0.324 Sum_probs=25.2
Q ss_pred hcCCHHH---HHHHHHhcCCCHHHHHHHHHHHhc
Q 004094 742 LDLSRTR---MDEISKTMNVSVEELCKRVEELTR 772 (774)
Q Consensus 742 l~l~~~~---q~~i~~~~~~~~~~i~~~l~~l~~ 772 (774)
.+|++.+ -.+||+++|++..+|.+.|-.|++
T Consensus 22 ~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~k 55 (75)
T 1sfu_A 22 LSLNTNDYTTAISLSNRLKINKKKINQQLYKLQK 55 (75)
T ss_dssp HTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455544 689999999999999999988864
No 247
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=37.69 E-value=5.2e+02 Score=29.65 Aligned_cols=154 Identities=8% Similarity=0.021 Sum_probs=74.2
Q ss_pred CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeC
Q 004094 399 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 478 (774)
Q Consensus 399 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~ 478 (774)
..|.-|+++...+.+.++-.. ...|..++...... ..+.-.....+..|+. ...+. +|.+.-.
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~---------~~~I~v~~ldG~~~-~~l~~~~l~~P~gIaV---Dp~~g-~LYwtD~--- 533 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSV---------LGTVSVADTKGVKR-KTLFRENGSKPRAIVV---DPVHG-FMYWTDW--- 533 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETT---------TTEEEEEETTSSSE-EEEEECTTCCEEEEEE---ETTTT-EEEEEEC---
T ss_pred CCcceeeeeecCCcEEEEecC---------CCeEEEEeCCCCeE-EEEEeCCCCCcceEEE---ecCCC-CEEEecC---
Confidence 568889988766544444322 23677777643221 1111122233444332 21112 2222110
Q ss_pred CCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEec--cccCeEEEEEC--CEEEEEEeeecCCCch--hhhhhccccc
Q 004094 479 PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLN--AFNGKLLAAIN--QKIQLYKWMLRDDGTR--ELQSECGHHG 552 (774)
Q Consensus 479 ~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~--~~~~~lv~~~g--~~l~v~~~~~~~~~~~--~l~~~~~~~~ 552 (774)
...++|..+.++....+.+....+ ..+.+|+ ..+++|+++-. .+|..+.++ |.. .+... ...
T Consensus 534 -----g~~~~I~~~~~dG~~~~~lv~~~l-~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d----G~~~~~v~~~--~~~ 601 (791)
T 3m0c_C 534 -----GTPAKIKKGGLNGVDIYSLVTENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVN----GGNRKTILED--EKR 601 (791)
T ss_dssp -----SSSCEEEEEETTSCCEEEEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETT----SCSCEEEEEC--TTT
T ss_pred -----CCCCeEEEEecCCCceEEEEeCCC-CCceEEEEecCCCeEEEEeCCCCcEEEEecC----CCceEEEecC--CCc
Confidence 012566666665434444433222 2344444 45788888764 456665542 321 12111 011
Q ss_pred ceEEEEEEEeCCEEEEEeccccEEEEEEEc
Q 004094 553 HILALYVQTRGDFIVVGDLMKSISLLIYKH 582 (774)
Q Consensus 553 ~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~ 582 (774)
...+..|.+.+++|++.|....- +.+++.
T Consensus 602 l~~P~glav~~~~lYwtD~~~~~-I~~~dk 630 (791)
T 3m0c_C 602 LAHPFSLAVFEDKVFWTDIINEA-IFSANR 630 (791)
T ss_dssp TSSEEEEEEETTEEEEEETTTTE-EEEEET
T ss_pred cCCCCEEEEeCCEEEEEECCCCE-EEEEeC
Confidence 22456677789999999977653 345554
No 248
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=36.69 E-value=3.2e+02 Score=26.94 Aligned_cols=157 Identities=8% Similarity=0.023 Sum_probs=74.9
Q ss_pred CcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeC
Q 004094 399 EHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVL 478 (774)
Q Consensus 399 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~ 478 (774)
..|.-+++++..+.+.++-.. ...|..+++.......... .....+..++ +...+...++...
T Consensus 77 ~~p~glavd~~~~~ly~~d~~---------~~~I~~~~~~g~~~~~~~~-~~~~~P~~ia---vdp~~g~ly~~d~---- 139 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSV---------LGTVSVADTKGVKRKTLFR-ENGSKPRAIV---VDPVHGFMYWTDW---- 139 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETT---------TTEEEEEETTSSSEEEEEE-CTTCCEEEEE---EETTTTEEEEEEC----
T ss_pred CCcCEEEEeecCCeEEEEECC---------CCEEEEEeCCCCceEEEEE-CCCCCcceEE---eCCCCCEEEEEcc----
Confidence 468889988654443333222 2367777775322111111 1223444443 2222233333221
Q ss_pred CCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEecc--ccCeEEEEEC--CEEEEEEeeecCCCchhhhhhcccccce
Q 004094 479 PEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNA--FNGKLLAAIN--QKIQLYKWMLRDDGTRELQSECGHHGHI 554 (774)
Q Consensus 479 ~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~--~~~~lv~~~g--~~l~v~~~~~~~~~~~~l~~~~~~~~~~ 554 (774)
+ ..++|+.++.+....+.+....+ ..+..|+- -+++|+++-. ++|..++++-. ..+.+.... ....
T Consensus 140 -~----~~~~I~~~~~dG~~~~~~~~~~~-~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~--~~~~~~~~~--~~~~ 209 (316)
T 1ijq_A 140 -G----TPAKIKKGGLNGVDIYSLVTENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILEDE--KRLA 209 (316)
T ss_dssp -S----SSCEEEEEETTSCCEEEEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEEECT--TTTS
T ss_pred -C----CCCeEEEEcCCCCCeEEEEECCC-CCceEEEEeccCCEEEEEECCCCeEEEEecCCC--ceEEEeecC--CccC
Confidence 0 13678777765433443332222 23444443 3677877654 46777665311 111111110 0112
Q ss_pred EEEEEEEeCCEEEEEeccccEEEEEEEcc
Q 004094 555 LALYVQTRGDFIVVGDLMKSISLLIYKHE 583 (774)
Q Consensus 555 ~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~ 583 (774)
.|..|.+.++++++.|.... .+.+++..
T Consensus 210 ~P~giav~~~~ly~~d~~~~-~V~~~~~~ 237 (316)
T 1ijq_A 210 HPFSLAVFEDKVFWTDIINE-AIFSANRL 237 (316)
T ss_dssp SEEEEEEETTEEEEEETTTT-EEEEEETT
T ss_pred CcEEEEEECCEEEEEECCCC-eEEEEeCC
Confidence 34556667899999996655 35667753
No 249
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=34.19 E-value=27 Score=39.88 Aligned_cols=127 Identities=11% Similarity=0.019 Sum_probs=59.9
Q ss_pred cceEEEEEEEeCCeEEEEEEEeecCceeEec--cccCeEEEEE-C--CEEEEEEeeecCCCch--hhhhhcccccceEEE
Q 004094 485 TKGRILVFIVEDGKLQLIAEKETKGAVYSLN--AFNGKLLAAI-N--QKIQLYKWMLRDDGTR--ELQSECGHHGHILAL 557 (774)
Q Consensus 485 ~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~--~~~~~lv~~~-g--~~l~v~~~~~~~~~~~--~l~~~~~~~~~~~~~ 557 (774)
..++|.+++......+.+..... ..+..|+ +.+++|+++- + .+|+++.+ +|.. .+... .. ..+..+
T Consensus 473 ~~~~I~v~d~dg~~~~~l~~~~~-~~P~giavDp~~g~ly~td~~~~~~I~~~~~----dG~~~~~l~~~-~l-~~PnGl 545 (699)
T 1n7d_A 473 VLGTVSVADTKGVKRKTLFREQG-SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL----NGVDIYSLVTE-NI-QWPNGI 545 (699)
T ss_dssp TTSCEEEEBSSSCCEEEECCCSS-CCCCCEECCSSSSCCEECCCSSSCCEEBCCS----SSCCCCEESCS-SC-SSCCCE
T ss_pred cCCeEEEEecCCCceEEEEeCCC-CCcceEEEccCCCcEEEcccCCCCeEEEEeC----CCCCeeEEEeC-CC-CCccEE
Confidence 34677777665444444432222 2233443 3467776654 3 45655443 2221 11111 00 112234
Q ss_pred EEEEeCCEEEEEeccccEEEEEEEccCCeEEEEecc----CCcceeEEEEEeeCCeEEEEccC-CcEEEEe
Q 004094 558 YVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARD----YNANWMSAVEILDDDIYLGAENN-FNLFTVR 623 (774)
Q Consensus 558 ~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D----~~~~~v~~~~~l~~~~~l~~D~~-gnl~~l~ 623 (774)
.++..+++|+++|..... +.+++.+......+... ..|..+ . ++.+.++.+|.. +.|..+.
T Consensus 546 avd~~~~~LY~aD~~~~~-I~~~d~dG~~~~~~~~~~~~~~~P~gl---a-vd~~~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 546 TLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSL---A-VFEDKVFWTDIINEAIFSAN 611 (699)
T ss_dssp EECTTTCCEEEEETTTTE-EEEECSSSSCCEEECCCSSSCSSCCCC---E-EETTEEEEECSTTTCEEEEE
T ss_pred EEeccCCEEEEEecCCCe-EEEEccCCCceEEEEecCCcCCCceEe---E-EECCEEEEEeCCCCeEEEEE
Confidence 444457899999987653 44566544333333322 223322 2 255677777754 4454444
No 250
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=33.32 E-value=3.4e+02 Score=26.27 Aligned_cols=125 Identities=14% Similarity=0.130 Sum_probs=65.4
Q ss_pred CcEEEEecCCCceeeeEeCCCC-CcEEEEEEC-CCEEEEEEcCCeEEEEEEcCc-eEEEEEeccCCc-eeEEEEeCCCCC
Q 004094 153 GSVRLVSSTSRELRNEWKSPPG-YSVNVATAN-ASQVLLATGGGHLVYLEIGDG-ILTEVKHAQLEY-EISCLDINPIGE 228 (774)
Q Consensus 153 ~~i~l~~~~~~~~~~~~~~~~~-~~I~~a~~~-~~~lvv~~~~~~~~~~~~~~~-~l~~~~~~~l~~-~is~l~~~~~~~ 228 (774)
.++..++ ..++.. |....+ ..+.....+ +..+.++..++.+..+.- ++ .+... .... .++++.+.
T Consensus 195 ~~l~~~d-~~g~~~--~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~---~~~~~~~~~~~~~---- 263 (330)
T 3hxj_A 195 DKVYAIN-PDGTEK--WNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRF---KTGKRIESSPVIG---- 263 (330)
T ss_dssp SSEEEEC-TTSCEE--EEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEE---ECSSCCCSCCEEC----
T ss_pred CEEEEEC-CCCcEE--EEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEe---eCCCCccccceEc----
Confidence 7788887 333333 433222 224333444 447777776677766632 23 33222 2221 12223232
Q ss_pred CCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEe
Q 004094 229 NPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLN 297 (774)
Q Consensus 229 ~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~ 297 (774)
....+.+|+. +|.+..|+. +.+.+....++. ....+++.. ....|++|+.+|.+......
T Consensus 264 ---~~g~l~v~t~-~ggl~~~d~-~g~~~~~~~~~~-~~~~~~~~d---~~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 264 ---NTDTIYFGSY-DGHLYAINP-DGTEKWNFETGS-WIIATPVID---ENGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp ---TTSCEEEECT-TCEEEEECT-TSCEEEEEECSS-CCCSCCEEC---TTCCEEEECTTSCEEEEEC-
T ss_pred ---CCCeEEEecC-CCCEEEECC-CCcEEEEEEcCC-ccccceEEc---CCCEEEEEcCCCeEEEEecc
Confidence 1345778887 778888874 555555544442 122333221 23468999999998877644
No 251
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=32.83 E-value=3.6e+02 Score=26.36 Aligned_cols=167 Identities=13% Similarity=0.110 Sum_probs=80.1
Q ss_pred EEEEEECCC--ceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeec
Q 004094 431 FVRLLDDQT--FEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETK 508 (774)
Q Consensus 431 ~l~l~d~~~--~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~ 508 (774)
.+..+|+.+ |+.+.....+... .++.. + +...+++|-.... .......+++|+...++.+.+.....+
T Consensus 79 ~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~--~---~~~iyv~GG~~~~---~~~~~~~~~~yd~~~~~W~~~~~~p~~ 148 (318)
T 2woz_A 79 YFFQLDNVSSEWVGLPPLPSARCL--FGLGE--V---DDKIYVVAGKDLQ---TEASLDSVLCYDPVAAKWSEVKNLPIK 148 (318)
T ss_dssp EEEEEETTTTEEEECSCBSSCBCS--CEEEE--E---TTEEEEEEEEBTT---TCCEEEEEEEEETTTTEEEEECCCSSC
T ss_pred cEEEEeCCCCcEEECCCCCccccc--cceEE--E---CCEEEEEcCccCC---CCcccceEEEEeCCCCCEeECCCCCCc
Confidence 477788854 5544322221111 22222 2 2456777754311 123456788888887787776532211
Q ss_pred CceeEeccccCeEEEEECC--------EEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEE-Eecccc---EE
Q 004094 509 GAVYSLNAFNGKLLAAINQ--------KIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVV-GDLMKS---IS 576 (774)
Q Consensus 509 g~v~~i~~~~~~lv~~~g~--------~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~v-gD~~~S---v~ 576 (774)
-.-.+++.++++|++.-|. .+.+|+. . ..+ +.........-...+..+.++.|++ |-.... -.
T Consensus 149 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~--~-~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 223 (318)
T 2woz_A 149 VYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNP--K-KGD--WKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSAS 223 (318)
T ss_dssp EESCEEEEETTEEEEECCEESSSCBCCCEEEEET--T-TTE--EEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEE
T ss_pred ccccEEEEECCEEEEEcCCCCCCCccceEEEEcC--C-CCE--EEECCCCCCCcccceEEEECCEEEEEcCcCCCCccce
Confidence 1112334467777655442 3555543 1 122 2222111111111223345665554 432111 23
Q ss_pred EEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEE
Q 004094 577 LLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLG 612 (774)
Q Consensus 577 ~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~ 612 (774)
+..|+.+.++-..++.-+.+|...++..+++..++.
T Consensus 224 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 259 (318)
T 2woz_A 224 VEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAI 259 (318)
T ss_dssp EEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred EEEEECCCCeEEECCCCCCcccceEEEEECCEEEEE
Confidence 557888888888887666666554555554333443
No 252
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=32.10 E-value=3.5e+02 Score=26.03 Aligned_cols=190 Identities=14% Similarity=0.175 Sum_probs=97.5
Q ss_pred cCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEE
Q 004094 213 QLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLL 292 (774)
Q Consensus 213 ~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~ 292 (774)
.+..++|.+++.+- ...+++..+.++.|..+++. .+++....+....-++.+++. ++..++++.=+++.++
T Consensus 24 g~~~~lSGla~~~~------~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~--~~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 24 GITNNISSLTWSAQ------SNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYI--GDNQFVISDERDYAIY 94 (255)
T ss_dssp TCCSCEEEEEEETT------TTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEEC--STTEEEEEETTTTEEE
T ss_pred CcccCcceeEEeCC------CCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEe--CCCEEEEEECCCCcEE
Confidence 34568999988641 34566656668888888876 555544455432346666554 3344445555778899
Q ss_pred EEEEecCCCccccceeee--cCCCCe--EEEEEEe-CCcceEEEecCC-CeEEEecCC-----cEEEee-------eccc
Q 004094 293 NFLLNMKTGELTDRKKVS--LGTQPI--TLRTFSS-KNTTHVFAASDR-PTVIYSSNK-----KLLYSN-------VNLK 354 (774)
Q Consensus 293 ~y~~~~~~~~l~~~~~~~--lG~~pv--~l~~~~~-~~~~~v~~~~~~-p~~l~~~~~-----~~~~~~-------~~~~ 354 (774)
.|.++.. +.+....... ++..|- -+.-+.. ...+.++++.++ |.-+|..++ .+.... +...
T Consensus 95 ~~~v~~~-~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 95 VISLTPN-SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD 173 (255)
T ss_dssp EEEECTT-CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred EEEcCCC-CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccC
Confidence 8888764 2222222222 222221 1111111 123456666654 434443322 122210 0001
Q ss_pred CceeeecccCCCCCCcEEEEeCCeEEEEEEcCCCCeEEEEEeCCC----------cccEEEEecCCCEEEEE
Q 004094 355 EVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE----------HPRRICHQEQSRTFAIC 416 (774)
Q Consensus 355 ~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~----------tp~~i~y~~~~~~~~v~ 416 (774)
.+.+++ |+. -.+.+++.++..=.+..++...+ ..+..+|.. .|.-|+++++.+.|++.
T Consensus 174 d~S~l~-~dp--~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs 241 (255)
T 3qqz_A 174 DVSGAE-FNQ--QKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS 241 (255)
T ss_dssp CCCEEE-EET--TTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred CceeEE-EcC--CCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence 111111 221 12345555544444455665444 566666652 78999999999988873
No 253
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=31.57 E-value=5.5e+02 Score=28.08 Aligned_cols=86 Identities=12% Similarity=0.047 Sum_probs=49.8
Q ss_pred EEEecCCCEEEEEEeccCC--------CC------CceeeeEEEEEECCCceEEEEEECCCCce-----EEEEEEEEEc-
Q 004094 404 ICHQEQSRTFAICSLKNQS--------CA------EESEMHFVRLLDDQTFEFISTYPLDTFEY-----GCSILSCSFS- 463 (774)
Q Consensus 404 i~y~~~~~~~~v~~~~~~~--------~~------~~~~~~~l~l~d~~~~~~i~~~~~~~~E~-----~~si~~~~~~- 463 (774)
.+|+++.+++.+.+....+ .+ +......|.-+|+.|.+.+-.+++.+++. +.+.......
T Consensus 251 ~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~ 330 (582)
T 1flg_A 251 ASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKA 330 (582)
T ss_dssp CEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEEC
T ss_pred ceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeec
Confidence 5666666766666542110 11 12233578888999999999988865532 1222222221
Q ss_pred CCCc--eEEEEEeeeeCCCCCCCcceEEEEEEEeCCeE
Q 004094 464 DDSN--VYYCVGTAYVLPEENEPTKGRILVFIVEDGKL 499 (774)
Q Consensus 464 ~~~~--~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl 499 (774)
.+++ .++++|+ ..|.+|+++...+++
T Consensus 331 ~~G~~~~~v~~~~----------~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 331 KDGKIVKATAHAD----------RNGFFYVVDRSNGKL 358 (582)
T ss_dssp SSSCEEEEEEEEC----------TTSEEEEEETTTCCE
T ss_pred CCCCEEEEEEEEC----------CCceEEEEECCCCCE
Confidence 1232 4566665 458999998876654
No 254
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=30.59 E-value=3.8e+02 Score=25.97 Aligned_cols=189 Identities=11% Similarity=0.036 Sum_probs=98.6
Q ss_pred EeccCCc--eeEEEEeCCCCCCCCCcceEEEEE--ecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEE
Q 004094 210 KHAQLEY--EISCLDINPIGENPSYSQIAAVGM--WTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCA 285 (774)
Q Consensus 210 ~~~~l~~--~is~l~~~~~~~~~~~~~~~~vg~--~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vg 285 (774)
...+++. ....+++.+ ...+.+++ +.+++|.++++.+.+.+....++....++.+.+. + ..|++.
T Consensus 13 ~~~p~~~~~f~~Gl~~~~-------dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g--~~lyv~ 81 (266)
T 2iwa_A 13 NEFPHDPYAFTQGLVYAE-------NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--N--EKLYQV 81 (266)
T ss_dssp EEEECCTTCCEEEEEECS-------TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--T--TEEEEE
T ss_pred EEEECCCCCCcccEEEeC-------CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--C--CEEEEE
Confidence 3345543 245677743 13566665 4468999999999888776666543344444333 3 245554
Q ss_pred e-CCCcEEEEEEecCCCccccceeeecC-CCCeEEEEEEeCCcceEEEecCCCeEEEec-C-Cc-EEEeeeccc--Ccee
Q 004094 286 L-GDGHLLNFLLNMKTGELTDRKKVSLG-TQPITLRTFSSKNTTHVFAASDRPTVIYSS-N-KK-LLYSNVNLK--EVSH 358 (774)
Q Consensus 286 l-~~G~l~~y~~~~~~~~l~~~~~~~lG-~~pv~l~~~~~~~~~~v~~~~~~p~~l~~~-~-~~-~~~~~~~~~--~i~~ 358 (774)
. .+|.+.+|. ..+. +..+....| ..+..|.+ ++ ..+|++.....+...+ . .+ ....++... ++..
T Consensus 82 t~~~~~v~viD--~~t~--~v~~~i~~g~~~g~glt~---Dg-~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~ 153 (266)
T 2iwa_A 82 VWLKNIGFIYD--RRTL--SNIKNFTHQMKDGWGLAT---DG-KILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIR 153 (266)
T ss_dssp ETTCSEEEEEE--TTTT--EEEEEEECCSSSCCEEEE---CS-SSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred EecCCEEEEEE--CCCC--cEEEEEECCCCCeEEEEE---CC-CEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccc
Confidence 4 567776654 3333 233445566 44445543 23 3455543222222222 1 11 222233211 1110
Q ss_pred eecccCCCCCCcEEEEe-CCeEEEEEEcCCCCeEEEEEeCC--------------CcccEEEEecCCCEEEEEEecc
Q 004094 359 MCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLG--------------EHPRRICHQEQSRTFAICSLKN 420 (774)
Q Consensus 359 ~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~--------------~tp~~i~y~~~~~~~~v~~~~~ 420 (774)
...+ .+.++.+|+. ...=.+..++....-.+++|+++ ..|..|+|++..+.+.|.....
T Consensus 154 ~nel---e~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~ 227 (266)
T 2iwa_A 154 LNEL---EYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW 227 (266)
T ss_dssp EEEE---EEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC
T ss_pred ceeE---EEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC
Confidence 0000 0113444443 22225667777665578889885 3578999999999888877543
No 255
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=29.25 E-value=4.5e+02 Score=27.41 Aligned_cols=132 Identities=5% Similarity=-0.027 Sum_probs=0.0
Q ss_pred eEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEEEECC-------EEEEEEeeecCCCchhhhhhcccccceEEEE
Q 004094 487 GRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAAINQ-------KIQLYKWMLRDDGTRELQSECGHHGHILALY 558 (774)
Q Consensus 487 Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~~g~-------~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~ 558 (774)
++|+.++...++++.+.. ....+..|+.- +|..++..+. .++.+. .++.....+.......+..+.
T Consensus 159 ~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~----~~g~~~~~~~l~~~~~p~gia 232 (430)
T 3tc9_A 159 HPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT----RESGFKVITELTKGQNCNGAE 232 (430)
T ss_dssp EEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE----GGGTSCSEEEEEECSSCCCEE
T ss_pred CcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe----CCCceeeeeeeccCCCceEEE
Q ss_pred EEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCe-EEEEcc-CCcEEEEeeC
Q 004094 559 VQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI-YLGAEN-NFNLFTVRKN 625 (774)
Q Consensus 559 l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~-~l~~D~-~gnl~~l~~~ 625 (774)
+.-.+.+|+++|...+ .+++|+.+...+..+.......|...+.+-.++. +.++|. .+.|+.+.++
T Consensus 233 vdp~~g~lyv~d~~~~-~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 233 THPINGELYFNSWNAG-QVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp ECTTTCCEEEEETTTT-EEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EeCCCCEEEEEECCCC-EEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
No 256
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=29.17 E-value=48 Score=34.23 Aligned_cols=55 Identities=9% Similarity=0.114 Sum_probs=29.2
Q ss_pred ceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccc-cCeEEEE--ECCEEEEEEe
Q 004094 467 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF-NGKLLAA--INQKIQLYKW 534 (774)
Q Consensus 467 ~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~-~~~lv~~--~g~~l~v~~~ 534 (774)
...+++|+. .|.|+.|+...+++.-.. +. +++.+...+ ++.++++ .+..|+.++.
T Consensus 9 ~~~v~~gs~----------dg~v~a~d~~tG~~~W~~--~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~ 66 (369)
T 2hz6_A 9 ETLLFVSTL----------DGSLHAVSKRTGSIKWTL--KE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGS 66 (369)
T ss_dssp TTEEEEEET----------TSEEEEEETTTCCEEEEE--EC-CCSCCCC-----CCEEECTTTCCEEEC--
T ss_pred CCEEEEEcC----------CCEEEEEECCCCCEEEEe--cC-CCceecceEcCCCEEEEeCCCCEEEEEEC
Confidence 346777762 378999988766654332 23 566554444 5555554 3466766553
No 257
>2cy5_A Epidermal growth factor receptor pathway substrate 8-like protein 1; structural genomics, signal transduction, phosphorylation, PTB domain, NPPSFA; 1.90A {Mus musculus} SCOP: b.55.1.2 PDB: 2cy4_A
Probab=28.73 E-value=2.9e+02 Score=23.97 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=38.1
Q ss_pred CCeEEEEecCcEEEEecCCCceeeeEeCCCCCcEEEEE-EC-----CCEEEEEEcC-----CeEEEEEEc
Q 004094 144 YNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVAT-AN-----ASQVLLATGG-----GHLVYLEIG 202 (774)
Q Consensus 144 ~~~~vQVT~~~i~l~~~~~~~~~~~~~~~~~~~I~~a~-~~-----~~~lvv~~~~-----~~~~~~~~~ 202 (774)
...++||+++.|++++.+++..+-.+.. ..|..+. +. ++.+++...+ ..+.+|+.+
T Consensus 49 Q~m~L~v~~~~v~LlD~et~eelE~fpl---~~I~~~~av~~~~~y~siLllv~q~~~~~~~~iH~FQc~ 115 (140)
T 2cy5_A 49 QEMLLRVSPSQVTLLDPVSKEELESYPL---DAIVRCDAVMPRGRSRSLLLLVCQEPERAQPDVHFFQGL 115 (140)
T ss_dssp EEEEEEECSSEEEEECTTTCCEEEEEEG---GGEEEEEEECCSSCSSCEEEEEECCTTCSSCEEEEEEEC
T ss_pred ceeEEEECCCeEEEEccCccchhhcCCh---hhceeccccCCccccCcEEEEEEecCCCCCccEEEEEec
Confidence 4579999999999999998776777765 3577663 32 3455555422 467777654
No 258
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=26.13 E-value=42 Score=25.99 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHHHHHhc
Q 004094 744 LSRTRMDEISKTMNVSVEELCKRVEELTR 772 (774)
Q Consensus 744 l~~~~q~~i~~~~~~~~~~i~~~l~~l~~ 772 (774)
-..-...++|+.++++...|.++|++|.+
T Consensus 14 ~g~vsv~eLa~~l~VS~~TIRrdL~~Le~ 42 (78)
T 1xn7_A 14 RGRMEAAQISQTLNTPQPMINAMLQQLES 42 (78)
T ss_dssp SCSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34445678999999999999999999865
No 259
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=25.72 E-value=5.1e+02 Score=28.72 Aligned_cols=200 Identities=10% Similarity=-0.035 Sum_probs=0.0
Q ss_pred ccEEEEecCCCEEEEEEeccCCCCCceee-----eEEEEEECCCceEEEEEECCCCceEEE-EEEEEEcCCCceEEEEEe
Q 004094 401 PRRICHQEQSRTFAICSLKNQSCAEESEM-----HFVRLLDDQTFEFISTYPLDTFEYGCS-ILSCSFSDDSNVYYCVGT 474 (774)
Q Consensus 401 p~~i~y~~~~~~~~v~~~~~~~~~~~~~~-----~~l~l~d~~~~~~i~~~~~~~~E~~~s-i~~~~~~~~~~~~i~VGT 474 (774)
+..++++|+.+.++.+.... ... ..+.++|..+.+. ..+...+.... +..+.+..+++.+..+..
T Consensus 63 v~~~~~SpDg~~l~~~~~~~------~~~~~~~~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~~~~SPdG~~la~~~~ 133 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVE------PIYQHSYTGYYVLSKIPHGDP---QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE 133 (723)
T ss_dssp CSEEEECTTSSEEEEEESCC------CCSSSCCCSEEEEEESSSCCC---EECCCTTCCSCCCSBCCBCSSTTCEEEEET
T ss_pred cceEEECCCCCEEEEEecCc------cceeecceeeEEEEECCCCce---EeccCCccccccccccEECCCCCEEEEEEC
Q ss_pred eeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCc-------------------eeEeccccCeEEEEECC--------
Q 004094 475 AYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGA-------------------VYSLNAFNGKLLAAINQ-------- 527 (774)
Q Consensus 475 ~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~-------------------v~~i~~~~~~lv~~~g~-------- 527 (774)
+.|+++++..++...+......+. -.+..+-+.+|+++...
T Consensus 134 ------------~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~ 201 (723)
T 1xfd_A 134 ------------NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIME 201 (723)
T ss_dssp ------------TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred ------------CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEE
Q ss_pred ---------------------------EEEEEEeeecCCCchhhhhhccc------ccceEEEEEEEeCCEEEEEecc--
Q 004094 528 ---------------------------KIQLYKWMLRDDGTRELQSECGH------HGHILALYVQTRGDFIVVGDLM-- 572 (774)
Q Consensus 528 ---------------------------~l~v~~~~~~~~~~~~l~~~~~~------~~~~~~~~l~~~~~~I~vgD~~-- 572 (774)
+|++++. .+.+........ ......+..+-.|.++++....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~----~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 277 (723)
T 1xfd_A 202 LPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL----NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ 277 (723)
T ss_dssp ECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES----SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS
T ss_pred eeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC----CCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCC
Q ss_pred ccEEEEEEEccCCeEEEEeccCCcceeE----EEEEeeCCeEEE---EccCC----cEEEEeeC
Q 004094 573 KSISLLIYKHEEGAIEERARDYNANWMS----AVEILDDDIYLG---AENNF----NLFTVRKN 625 (774)
Q Consensus 573 ~Sv~~~~~~~~~~~l~~~a~D~~~~~v~----~~~~l~~~~~l~---~D~~g----nl~~l~~~ 625 (774)
....++.|+.+.++...+.......|+. +..+-.++..++ ++.+| +..++.++
T Consensus 278 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 278 NVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp CEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred CeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
No 260
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=24.82 E-value=6.7e+02 Score=26.89 Aligned_cols=94 Identities=17% Similarity=0.317 Sum_probs=47.2
Q ss_pred EEEEEEEeCCeEEEEEEEeecCceeEecc-ccCeEEEEECCE----EEEEEeeecCCCchhhhhhcccccceEEEEEEEe
Q 004094 488 RILVFIVEDGKLQLIAEKETKGAVYSLNA-FNGKLLAAINQK----IQLYKWMLRDDGTRELQSECGHHGHILALYVQTR 562 (774)
Q Consensus 488 rl~v~~i~~~kl~~~~~~~~~g~v~~i~~-~~~~lv~~~g~~----l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 562 (774)
.+.+|++..++++.+.... + .++.- -+|+.++..+.. -.+|.|+.. .+ ++...............+-.
T Consensus 133 ~~~l~d~~~g~~~~l~~~~--~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~-~g--~~~~l~~~~~~~~~~~~SpD 205 (582)
T 3o4h_A 133 RVALYALDGGGLRELARLP--G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLS-SG--GLRVFDSGEGSFSSASISPG 205 (582)
T ss_dssp CEEEEEEETTEEEEEEEES--S--CEEEEEEETTEEEEEEEEETTEEEEEEEETT-TC--CCEEECCSSCEEEEEEECTT
T ss_pred CceEEEccCCcEEEeecCC--C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCC-CC--CceEeecCCCccccceECCC
Confidence 3448899888877766432 2 33332 156544432221 334555422 22 22222222222222333345
Q ss_pred CCEEEEEeccccEEEEEEEccCCeEE
Q 004094 563 GDFIVVGDLMKSISLLIYKHEEGAIE 588 (774)
Q Consensus 563 ~~~I~vgD~~~Sv~~~~~~~~~~~l~ 588 (774)
|.+|+.++.-....++.|+.+.++..
T Consensus 206 G~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 206 MKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp SCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred CCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 67888777655456777887766655
No 261
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=24.04 E-value=5.8e+02 Score=25.92 Aligned_cols=89 Identities=12% Similarity=0.014 Sum_probs=45.6
Q ss_pred ceEEEEEEEeCCeEEEEEEEeecCceeEecc--ccCeEEEEEC--CEEEEEEeeecCCCchhhhhhcccccceEEEEEEE
Q 004094 486 KGRILVFIVEDGKLQLIAEKETKGAVYSLNA--FNGKLLAAIN--QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQT 561 (774)
Q Consensus 486 ~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~--~~~~lv~~~g--~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 561 (774)
.++|+.++.+....+.+....+. .+..|+- .+++|+++-. ++|..++++. ...+.+.. .....|..|.+
T Consensus 224 ~~~I~r~~~dG~~~~~~~~~~~~-~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG--~~~~~~~~----~~~~~P~giav 296 (386)
T 3v65_B 224 TPRIEASSMDGSGRRIIADTHLF-WPNGLTIDYAGRRMYWVDAKHHVIERANLDG--SHRKAVIS----QGLPHPFAITV 296 (386)
T ss_dssp SCEEEEEETTSCSCEEEECSSCS-CEEEEEEEGGGTEEEEEETTTTEEEEECTTS--CSCEEEEC----SSCSSEEEEEE
T ss_pred CCEEEEEeCCCCCcEEEEECCCC-CeeeEEEeCCCCEEEEEECCCCEEEEEeCCC--CeeEEEEE----CCCCCceEEEE
Confidence 36777776653333333322222 2344443 4677877754 4566555421 11111111 11223555666
Q ss_pred eCCEEEEEeccccEEEEEEEc
Q 004094 562 RGDFIVVGDLMKSISLLIYKH 582 (774)
Q Consensus 562 ~~~~I~vgD~~~Sv~~~~~~~ 582 (774)
.++.|++.|.... .+.+++.
T Consensus 297 ~~~~ly~td~~~~-~V~~~~~ 316 (386)
T 3v65_B 297 FEDSLYWTDWHTK-SINSANK 316 (386)
T ss_dssp ETTEEEEEETTTT-EEEEEET
T ss_pred ECCEEEEeeCCCC-eEEEEEC
Confidence 8889999997665 3567763
No 262
>2fi2_A Zinc finger protein 42; SCAN domain, ZNF-42, MZF-1, homodimer, transcription factor, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.28.3.2
Probab=23.35 E-value=1.2e+02 Score=24.32 Aligned_cols=42 Identities=26% Similarity=0.276 Sum_probs=37.9
Q ss_pred cEEehhHHHHHhc-CCHHHHHHHHHhcCCCHHHHHHHHHHHhc
Q 004094 731 NFLDGDLIESFLD-LSRTRMDEISKTMNVSVEELCKRVEELTR 772 (774)
Q Consensus 731 ~~iDGdll~~fl~-l~~~~q~~i~~~~~~~~~~i~~~l~~l~~ 772 (774)
-++|-=.|++|+. ||.+.|..|-..-=-+.++....+|+|++
T Consensus 48 QIlElLVLEQFL~iLP~eiq~wV~~~~P~s~eeav~lvEdl~~ 90 (94)
T 2fi2_A 48 QMLELLVLEQFLGALPPEIQARVQGQRPGSPEEAAALVDGLRR 90 (94)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 5889999999995 79999999999988899999999999876
No 263
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=22.47 E-value=51 Score=26.10 Aligned_cols=29 Identities=10% Similarity=0.160 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHHHHHhc
Q 004094 744 LSRTRMDEISKTMNVSVEELCKRVEELTR 772 (774)
Q Consensus 744 l~~~~q~~i~~~~~~~~~~i~~~l~~l~~ 772 (774)
-..-...++|+.++++...|.++|++|.+
T Consensus 14 ~g~vsv~eLA~~l~VS~~TIRrDL~~Le~ 42 (87)
T 2k02_A 14 QGRMEAKQLSARLQTPQPLIDAMLERMEA 42 (87)
T ss_dssp SCSEEHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34445678999999999999999999875
No 264
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=22.42 E-value=2.3e+02 Score=32.06 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=48.6
Q ss_pred EEEEECCCEEEEEEcCCeEEEEEEcC-ceEEEEE------------------eccCCceeEEEEeCCCCCCCCCcceEEE
Q 004094 178 NVATANASQVLLATGGGHLVYLEIGD-GILTEVK------------------HAQLEYEISCLDINPIGENPSYSQIAAV 238 (774)
Q Consensus 178 ~~a~~~~~~lvv~~~~~~~~~~~~~~-~~l~~~~------------------~~~l~~~is~l~~~~~~~~~~~~~~~~v 238 (774)
..+++++..++|++.+|.++.|+-++ +.+.+.. +..-+.-|+|+.+. ..++++
T Consensus 165 ~L~avs~~~liVsL~DGGLLrL~r~~~~d~~~~~Fnd~s~l~SL~~lf~~~~~~~~~~~Is~~~~~--------~~fLft 236 (729)
T 3f7f_A 165 FLFYVSPQFSVVFLEDGGLLGLKKVDGVHYEPLLFNDNSYLKCLTRFFSRSSKSDYDSVISCKLFH--------ERYLIV 236 (729)
T ss_dssp EEEECSSSBEEEEETTSCEECCEESSSSCEECCCCCCCGGGGGGSTTCCTTCSSCCCCEEEEEEET--------TTEEEE
T ss_pred EEEEECCCeEEEEEcCCCEEEEEeccCCCcceeeecCCchhhhhHHhhcCCCCCCcCceEEEeccC--------CcEEEE
Confidence 45677778899999988888776543 2232210 00112345565442 345554
Q ss_pred EEecCCEEEEEECCCCCeeEEecCC
Q 004094 239 GMWTDISVRIFSLPDLNLITKEHLG 263 (774)
Q Consensus 239 g~~~~~~i~i~~l~~~~~~~~~~l~ 263 (774)
...|+.++||++.+.+++....++
T Consensus 237 -L~~Dh~LRiWsL~t~~lv~t~DL~ 260 (729)
T 3f7f_A 237 -LTQNCHLKIWDLTSFTLIQDYDMV 260 (729)
T ss_dssp -EETTCEEEEEETTTTEEEEEEETT
T ss_pred -EEcCCeEEEEEcCCCceEEeeccc
Confidence 444999999999998887766663
No 265
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=21.92 E-value=30 Score=26.69 Aligned_cols=39 Identities=13% Similarity=0.299 Sum_probs=29.6
Q ss_pred ehhHHHHHhcCC---HHHHHHHHHhcCCCHHHHHHHHHHHhc
Q 004094 734 DGDLIESFLDLS---RTRMDEISKTMNVSVEELCKRVEELTR 772 (774)
Q Consensus 734 DGdll~~fl~l~---~~~q~~i~~~~~~~~~~i~~~l~~l~~ 772 (774)
|-.+|+.+.+.+ .-...+||+.+|++...|.+.|..|.+
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAK 57 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344555555555 556799999999999999999988865
No 266
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=21.65 E-value=2.4e+02 Score=28.30 Aligned_cols=122 Identities=9% Similarity=0.014 Sum_probs=60.0
Q ss_pred eEEEEEEEeCCeEEEEEEEeecCce-eEeccccCeEEEEEC--------CEEEEEEeeecCCCchhhhhhcccccc--eE
Q 004094 487 GRILVFIVEDGKLQLIAEKETKGAV-YSLNAFNGKLLAAIN--------QKIQLYKWMLRDDGTRELQSECGHHGH--IL 555 (774)
Q Consensus 487 Grl~v~~i~~~kl~~~~~~~~~g~v-~~i~~~~~~lv~~~g--------~~l~v~~~~~~~~~~~~l~~~~~~~~~--~~ 555 (774)
..+++|+...++.+.+........- .+++.++++|++.-| ..++.|+++.. ...++ ....+... ..
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~-~~~W~--~~~~~~~~~~~~ 244 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGN-NLKWN--KLAPVSSPDGVA 244 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC----CEEE--ECCCSSTTTCCB
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCC-CCcEE--ecCCCCCCcccc
Confidence 5889999888888887654332222 456667888766544 23555554211 12222 21111111 11
Q ss_pred EEEEEEeCCEEEE-Eecc----------------c----cEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEE
Q 004094 556 ALYVQTRGDFIVV-GDLM----------------K----SISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYL 611 (774)
Q Consensus 556 ~~~l~~~~~~I~v-gD~~----------------~----Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l 611 (774)
..++.+.+++|++ |-.. . .-.+..|+.+.++-..++.-+.+|.-.++..++...++
T Consensus 245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v 321 (357)
T 2uvk_A 245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLI 321 (357)
T ss_dssp SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEE
T ss_pred cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEE
Confidence 1223455665554 4321 0 02345688877777777766667764444444433344
No 267
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=20.31 E-value=98 Score=23.35 Aligned_cols=29 Identities=14% Similarity=0.338 Sum_probs=23.2
Q ss_pred hHHHHHhcCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 004094 736 DLIESFLDLSRTRMDEISKTMNVSVEELCKRVEE 769 (774)
Q Consensus 736 dll~~fl~l~~~~q~~i~~~~~~~~~~i~~~l~~ 769 (774)
++++.|-. |.++|+.+|+++..|.+.++.
T Consensus 5 ~ai~~~G~-----~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 5 ELVRHFGD-----VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHSS-----HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHCC-----HHHHHHHHCCCHHHHHHHHhC
Confidence 45666643 899999999999999988764
No 268
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=20.27 E-value=6.3e+02 Score=24.89 Aligned_cols=66 Identities=9% Similarity=0.033 Sum_probs=35.4
Q ss_pred EEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEee--CCeEEEEccC-CcEEEEeeC
Q 004094 558 YVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD--DDIYLGAENN-FNLFTVRKN 625 (774)
Q Consensus 558 ~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~--~~~~l~~D~~-gnl~~l~~~ 625 (774)
.+...+.+|++.|....-.+.+++.+......+..+. -.+...+ .++ .+.+..+|.. +.|..+.++
T Consensus 128 avdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~-l~~Pngl-avd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 128 ALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE-IYWPNGL-TLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp EEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSS-CSCEEEE-EEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECC-CCCccEE-EEeccCCEEEEEECCCCEEEEEcCC
Confidence 3333467999999654344667776644333332221 1222333 334 3566677874 556666654
Done!