BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004095
(774 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
Bestatin
Length = 421
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 90/217 (41%), Gaps = 25/217 (11%)
Query: 11 NHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFK 70
++++ +P + + I++ SH D+V A GA D +S VAV LELAR MS+
Sbjct: 204 HNVIATKKPDANKKNTNDIIIIGSHHDSVEKAPGANDDASGVAVTLELARVMSKLK--TD 261
Query: 71 NAVIFLFNTGEEEGLNGAHSF---VTQHPWSTTIRV-AIDLEAMGIGGKSGLFQAGPHPW 126
+ F+ EE GL G+ + +++ TI + +D+ G ++
Sbjct: 262 TELRFITFGAEENGLIGSKKYAASLSEDEIKRTIGMFQLDMVGSKDAGDLIMYTIDGKKN 321
Query: 127 AVENFAAAAK------YPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSA 180
V + AAA P GQ D + A+ G+ F +
Sbjct: 322 RVTDLGAAASSRLSGVLPYGQEGRSDHESFHAL-------------GIPAALFIHAPVEP 368
Query: 181 VYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSL 217
YHT ND LD + L ++ + + + + QAA L
Sbjct: 369 WYHTPNDTLDKISKEKLDNVADIVGSAVYQAARPGEL 405
>pdb|1XJO|A Chain A, Structure Of Aminopeptidase
Length = 284
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 30 ILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAH 89
++ +H+D+V + G D S A +LE A A+S+ + + F + EE GL G+
Sbjct: 80 LMAGAHLDSVSSGAGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLIGSK 139
Query: 90 SFVTQHPWSTTIRVAIDLEAMGIG 113
+V P + ++A L IG
Sbjct: 140 FYVNNLPSADRSKLAGYLNFDXIG 163
>pdb|3IIB|A Chain A, Crystal Structure Of Peptidase M28 Precursor (Yp_926796.1)
From Shewanella Amazonensis Sb2b At 1.70 A Resolution
Length = 444
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 75/185 (40%), Gaps = 23/185 (12%)
Query: 23 SEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEE 82
S A+ +L+ +H+D+ GA D + VA++ A+ + + + + EE
Sbjct: 245 STKADEIVLIGAHLDSWDEGTGAIDDGAGVAIVTAAAKHILDLPQKPERTIRVVLYAAEE 304
Query: 83 EGLNGAHSFVTQHPWSTTIRVAIDLEAMGIGGKSGLFQAGP---HPWAVENFAAA----- 134
GL G ++ +H +LE I +S F AGP W V + A +
Sbjct: 305 LGLLGGKTYAKEH--------EAELEKHYIAAESD-FGAGPIYQIDWRVADTAHSPVINA 355
Query: 135 --AKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLL 192
P G V A + ASG + + VA L Y D +HT ND LD +
Sbjct: 356 XKVAEPLG-VAAGNNKASGGPDVSXLPALGVPVASLRQDGSDYFD---YHHTPNDTLDKI 411
Query: 193 KPGSL 197
P +L
Sbjct: 412 NPEAL 416
>pdb|1CP7|A Chain A, Aminopeptidase From Streptomyces Griseus
pdb|1QQ9|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
Methionine
pdb|1F2O|A Chain A, Crystal Structure Of The Streptomyces Griseus
Aminopeptidase Complexed With L-Leucine
pdb|1F2P|A Chain A, Crystal Structure Of The Streptomyces Griseus
Aminopeptidase Complexed With L-Phenylalanine
pdb|1TF8|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With L-
Tryptophan
pdb|1TF9|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
P-Iodo-L- Phenylalanine
pdb|1TKF|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Tryptophan
pdb|1TKH|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Phenylalanine
pdb|1TKJ|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Methionine
pdb|1XBU|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
P-Iodo-D- Phenylalanine
Length = 284
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 30 ILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAH 89
++ +H+D+V + G D S A +LE A A+S+ + + F + EE GL G+
Sbjct: 80 LMAGAHLDSVSSGAGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLIGSK 139
Query: 90 SFVTQHPWSTTIRVA 104
+V P + ++A
Sbjct: 140 FYVNNLPSADRSKLA 154
>pdb|3SI1|A Chain A, Structure Of Glycosylated Murine Glutaminyl Cyclase
Length = 327
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 20/91 (21%)
Query: 7 YSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAE-------GAGDCSSCVAVMLELA 59
Y ++I+ + P+ A+ ++++ H D+ + GA D + A+MLELA
Sbjct: 83 YRSFSNIISTLNPE-----AKRHLVLACHYDSKYFPRWDSRVFVGATDSAVPCAMMLELA 137
Query: 60 RAMSQWAHGFKN--------AVIFLFNTGEE 82
RA+ + H K+ ++ +F GEE
Sbjct: 138 RALDKKLHSLKDVSGSKPDLSLRLIFFDGEE 168
>pdb|3SI2|A Chain A, Structure Of Glycosylated Murine Glutaminyl Cyclase In
Presence Of The Inhibitor Pq50 (Pdbd150)
Length = 327
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 20/91 (21%)
Query: 7 YSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAE-------GAGDCSSCVAVMLELA 59
Y ++I+ + P+ A+ ++++ H D+ + GA D + A+MLELA
Sbjct: 83 YRSFSNIISTLNPE-----AKRHLVLACHYDSKYFPRWDSRVFVGATDSAVPCAMMLELA 137
Query: 60 RAMSQWAHGFKN--------AVIFLFNTGEE 82
RA+ + H K+ ++ +F GEE
Sbjct: 138 RALDKKLHSLKDVSGSKPDLSLQLIFFDGEE 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,280,502
Number of Sequences: 62578
Number of extensions: 859213
Number of successful extensions: 1832
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1824
Number of HSP's gapped (non-prelim): 11
length of query: 774
length of database: 14,973,337
effective HSP length: 106
effective length of query: 668
effective length of database: 8,340,069
effective search space: 5571166092
effective search space used: 5571166092
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)