Query 004095
Match_columns 774
No_of_seqs 368 out of 1676
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 17:27:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004095.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004095hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2194 Aminopeptidases of the 100.0 4E-126 8E-131 1094.6 55.0 683 2-766 120-834 (834)
2 PF04389 Peptidase_M28: Peptid 100.0 1.1E-30 2.4E-35 260.2 9.4 170 28-198 1-179 (179)
3 KOG2195 Transferrin receptor a 99.9 5.3E-25 1.2E-29 257.0 17.8 209 4-220 332-552 (702)
4 PRK10199 alkaline phosphatase 99.9 6.2E-22 1.3E-26 215.3 19.8 195 10-215 97-345 (346)
5 COG2234 Iap Predicted aminopep 99.8 2.9E-18 6.4E-23 194.0 15.5 192 9-211 183-393 (435)
6 KOG3946 Glutaminyl cyclase [Po 99.6 3.1E-15 6.7E-20 154.7 11.9 195 6-211 101-335 (338)
7 PF09940 DUF2172: Domain of un 99.4 2.3E-12 4.9E-17 139.8 11.8 176 25-214 127-308 (386)
8 PF05450 Nicastrin: Nicastrin; 99.3 3.1E-11 6.7E-16 126.2 16.2 167 28-194 1-200 (234)
9 COG4882 Predicted aminopeptida 99.2 1E-10 2.3E-15 124.9 15.4 175 10-218 178-365 (486)
10 KOG2526 Predicted aminopeptida 99.1 6.5E-10 1.4E-14 121.1 14.3 198 9-211 192-417 (555)
11 PF01546 Peptidase_M20: Peptid 99.0 1.8E-09 3.8E-14 107.6 10.9 165 31-209 1-188 (189)
12 TIGR03176 AllC allantoate amid 98.9 3.1E-09 6.8E-14 120.0 10.5 90 2-95 47-141 (406)
13 COG4310 Uncharacterized protei 98.9 1.6E-08 3.5E-13 106.6 12.1 170 26-213 177-355 (435)
14 TIGR01879 hydantase amidase, h 98.8 1.4E-08 3.1E-13 114.3 11.0 91 1-95 44-139 (401)
15 PRK09133 hypothetical protein; 98.8 2.3E-08 5E-13 115.0 11.0 96 9-109 87-203 (472)
16 PRK12890 allantoate amidohydro 98.8 3.4E-08 7.4E-13 111.6 11.0 90 1-94 51-145 (414)
17 TIGR01910 DapE-ArgE acetylorni 98.7 4.5E-08 9.8E-13 108.9 11.1 95 12-111 53-168 (375)
18 PRK12891 allantoate amidohydro 98.7 3.9E-08 8.4E-13 111.3 10.6 88 1-92 53-145 (414)
19 PRK08596 acetylornithine deace 98.7 8.1E-08 1.8E-12 108.9 12.6 97 9-110 61-178 (421)
20 PRK13590 putative bifunctional 98.7 4.3E-08 9.3E-13 115.9 10.6 89 1-93 227-321 (591)
21 PRK06133 glutamate carboxypept 98.7 1.3E-07 2.8E-12 106.9 13.5 95 10-111 87-198 (410)
22 PRK13799 unknown domain/N-carb 98.7 5.3E-08 1.2E-12 115.0 10.1 89 1-93 227-321 (591)
23 PRK07473 carboxypeptidase; Pro 98.7 1.9E-07 4.1E-12 104.5 13.3 96 11-111 62-174 (376)
24 PRK08588 succinyl-diaminopimel 98.6 2.2E-07 4.8E-12 103.4 12.3 93 10-109 48-161 (377)
25 PRK13013 succinyl-diaminopimel 98.6 1.8E-07 3.9E-12 105.9 11.5 98 10-111 71-189 (427)
26 PRK07906 hypothetical protein; 98.6 1.6E-07 3.5E-12 106.5 11.0 85 9-96 50-155 (426)
27 PRK13983 diaminopimelate amino 98.6 2.8E-07 6.1E-12 103.1 12.9 95 10-108 63-180 (400)
28 PRK12892 allantoate amidohydro 98.6 1.9E-07 4.1E-12 105.3 11.1 90 1-95 52-146 (412)
29 PRK12893 allantoate amidohydro 98.6 2.1E-07 4.5E-12 105.1 11.0 92 1-96 53-149 (412)
30 PRK07338 hypothetical protein; 98.6 2.3E-07 4.9E-12 104.3 10.9 93 11-110 81-190 (402)
31 PRK09290 allantoate amidohydro 98.6 2.5E-07 5.5E-12 104.5 11.2 90 2-95 51-145 (413)
32 PRK09104 hypothetical protein; 98.6 4E-07 8.7E-12 104.5 12.7 98 9-109 67-190 (464)
33 TIGR01883 PepT-like peptidase 98.5 2.5E-07 5.3E-12 102.4 10.1 80 10-94 49-146 (361)
34 PRK07907 hypothetical protein; 98.5 3.1E-07 6.8E-12 105.0 10.9 96 9-111 69-185 (449)
35 COG1363 FrvX Cellulase M and r 98.5 3.3E-06 7.1E-11 93.2 17.2 150 45-214 178-349 (355)
36 PRK13381 peptidase T; Provisio 98.5 5E-07 1.1E-11 101.8 10.8 89 2-94 45-184 (404)
37 PRK07079 hypothetical protein; 98.5 6.9E-07 1.5E-11 102.8 11.6 96 10-109 72-190 (469)
38 PRK04443 acetyl-lysine deacety 98.5 7.4E-07 1.6E-11 98.4 11.2 99 1-111 39-149 (348)
39 PRK05469 peptidase T; Provisio 98.5 1.2E-06 2.5E-11 99.0 13.0 91 1-94 45-186 (408)
40 TIGR01892 AcOrn-deacetyl acety 98.5 9.6E-07 2.1E-11 97.5 12.0 80 10-96 46-145 (364)
41 PRK06446 hypothetical protein; 98.5 7.6E-07 1.7E-11 101.5 11.0 95 9-110 49-164 (436)
42 PRK08201 hypothetical protein; 98.4 7.5E-07 1.6E-11 102.0 10.4 98 9-110 65-183 (456)
43 PRK06915 acetylornithine deace 98.4 1E-06 2.3E-11 99.7 11.3 94 9-109 79-193 (422)
44 PRK06837 acetylornithine deace 98.4 1.2E-06 2.5E-11 99.6 11.5 83 8-93 81-184 (427)
45 PRK08262 hypothetical protein; 98.4 8.8E-07 1.9E-11 102.3 10.2 81 11-94 98-201 (486)
46 TIGR01893 aa-his-dipept aminoa 98.4 1.3E-06 2.8E-11 100.8 11.3 103 1-111 37-166 (477)
47 PRK07318 dipeptidase PepV; Rev 98.4 1.1E-06 2.4E-11 101.0 10.6 86 7-96 63-167 (466)
48 TIGR01880 Ac-peptdase-euk N-ac 98.4 1.7E-06 3.6E-11 97.3 11.4 96 9-108 56-173 (400)
49 PRK13007 succinyl-diaminopimel 98.4 1.5E-06 3.2E-11 95.7 10.6 92 10-110 49-156 (352)
50 TIGR01886 dipeptidase dipeptid 98.3 1.5E-06 3.2E-11 100.1 10.1 85 8-96 63-166 (466)
51 TIGR01882 peptidase-T peptidas 98.3 2.3E-06 5E-11 96.8 11.4 89 1-93 46-187 (410)
52 PRK07522 acetylornithine deace 98.3 2.3E-06 5E-11 95.4 11.3 93 10-109 52-165 (385)
53 PRK09961 exoaminopeptidase; Pr 98.3 1.4E-05 3E-10 88.7 16.8 149 44-211 163-333 (344)
54 KOG2275 Aminoacylase ACY1 and 98.3 2E-06 4.4E-11 94.9 9.9 97 10-110 74-192 (420)
55 PRK13009 succinyl-diaminopimel 98.3 2.9E-06 6.4E-11 94.2 11.0 80 9-94 46-147 (375)
56 PRK06156 hypothetical protein; 98.3 3.1E-06 6.8E-11 98.8 11.5 94 8-109 93-213 (520)
57 PRK08554 peptidase; Reviewed 98.3 4.7E-06 1E-10 95.3 11.9 95 9-111 51-166 (438)
58 TIGR01900 dapE-gram_pos succin 98.3 3.6E-06 7.8E-11 94.1 10.7 96 11-111 41-171 (373)
59 PRK05111 acetylornithine deace 98.3 5.3E-06 1.1E-10 92.5 11.9 78 10-95 60-157 (383)
60 TIGR01891 amidohydrolases amid 98.3 6.1E-06 1.3E-10 91.7 12.0 93 9-110 42-151 (363)
61 PRK07205 hypothetical protein; 98.2 4.9E-06 1.1E-10 95.1 11.5 80 11-96 65-165 (444)
62 PRK15026 aminoacyl-histidine d 98.2 6.7E-06 1.5E-10 95.2 12.6 102 1-110 43-171 (485)
63 COG0624 ArgE Acetylornithine d 98.2 6.3E-06 1.4E-10 93.0 11.6 96 10-109 62-180 (409)
64 PRK13004 peptidase; Reviewed 98.2 7.6E-06 1.6E-10 92.1 12.1 101 1-109 48-171 (399)
65 TIGR01902 dapE-lys-deAc N-acet 98.2 7.4E-06 1.6E-10 90.0 11.4 96 2-111 31-138 (336)
66 PRK00466 acetyl-lysine deacety 98.2 8.2E-06 1.8E-10 90.1 10.9 94 2-111 44-149 (346)
67 TIGR03106 trio_M42_hydro hydro 98.2 4.1E-05 8.9E-10 84.9 16.4 144 45-208 181-339 (343)
68 PRK08651 succinyl-diaminopimel 98.2 7.7E-06 1.7E-10 91.6 10.6 90 11-111 64-173 (394)
69 TIGR01887 dipeptidaselike dipe 98.1 8.6E-06 1.9E-10 93.4 10.1 84 7-94 51-153 (447)
70 PRK08652 acetylornithine deace 98.1 1.4E-05 3.1E-10 87.6 11.4 77 28-110 56-144 (347)
71 TIGR01246 dapE_proteo succinyl 98.1 1.4E-05 3.1E-10 88.8 11.1 79 9-93 43-143 (370)
72 PF05343 Peptidase_M42: M42 gl 98.0 3.2E-05 7E-10 83.9 11.9 138 45-201 132-290 (292)
73 TIGR03107 glu_aminopep glutamy 97.9 0.00012 2.7E-09 81.3 13.9 147 45-212 176-342 (350)
74 TIGR03320 ygeY M20/DapE family 97.9 7.1E-05 1.5E-09 84.2 11.5 87 2-94 47-156 (395)
75 TIGR03526 selenium_YgeY putati 97.9 9.1E-05 2E-09 83.3 12.0 82 7-94 53-156 (395)
76 KOG2657 Transmembrane glycopro 97.9 0.0001 2.2E-09 83.1 11.7 188 9-198 156-375 (596)
77 PLN02693 IAA-amino acid hydrol 97.7 0.00018 3.8E-09 82.5 11.8 88 2-95 81-183 (437)
78 PRK09864 putative peptidase; P 97.7 0.0003 6.5E-09 78.3 13.1 146 45-211 173-341 (356)
79 PRK08737 acetylornithine deace 97.7 0.00016 3.6E-09 80.7 10.4 83 10-110 54-156 (364)
80 PLN02280 IAA-amino acid hydrol 97.7 0.00033 7.3E-09 81.1 12.4 90 9-106 139-243 (478)
81 COG4187 RocB Arginine degradat 97.5 0.00032 7E-09 78.0 9.0 110 9-123 64-223 (553)
82 PF04114 Gaa1: Gaa1-like, GPI 96.6 0.11 2.4E-06 60.8 19.1 185 9-215 2-229 (504)
83 KOG2276 Metalloexopeptidases [ 96.1 0.011 2.3E-07 65.7 6.6 70 25-94 89-179 (473)
84 PRK02813 putative aminopeptida 89.7 1.4 3.1E-05 50.6 9.4 148 43-205 230-422 (428)
85 COG1473 AbgB Metal-dependent a 88.8 2.8 6.1E-05 47.7 10.7 92 11-109 57-164 (392)
86 PTZ00371 aspartyl aminopeptida 88.4 5.2 0.00011 46.5 12.8 158 43-210 247-454 (465)
87 PRK02256 putative aminopeptida 88.2 4.5 9.9E-05 47.0 12.0 46 43-92 256-301 (462)
88 KOG3566 Glycosylphosphatidylin 78.1 6.8 0.00015 46.1 7.9 92 10-112 120-228 (617)
89 COG2195 PepD Di- and tripeptid 70.4 3.8 8.2E-05 46.9 3.4 59 47-108 144-203 (414)
90 TIGR03107 glu_aminopep glutamy 45.2 26 0.00056 39.4 4.4 35 4-41 34-68 (350)
91 PRK08651 succinyl-diaminopimel 41.6 53 0.0012 36.7 6.3 56 154-214 338-393 (394)
92 PF10190 Tmemb_170: Putative t 40.7 2.6E+02 0.0057 26.1 9.4 49 269-318 32-80 (105)
93 PRK07522 acetylornithine deace 38.0 86 0.0019 34.9 7.3 74 124-212 311-384 (385)
94 PRK08596 acetylornithine deace 34.4 79 0.0017 36.0 6.3 56 154-214 363-418 (421)
95 PF12911 OppC_N: N-terminal TM 32.5 50 0.0011 26.4 3.1 36 499-534 8-43 (56)
96 TIGR01880 Ac-peptdase-euk N-ac 32.1 82 0.0018 35.4 5.9 56 154-213 343-399 (400)
97 PF10337 DUF2422: Protein of u 31.5 5.7E+02 0.012 29.6 12.8 32 433-464 187-218 (459)
98 PRK07079 hypothetical protein; 30.8 1.3E+02 0.0029 34.7 7.5 56 156-214 402-457 (469)
99 PRK13381 peptidase T; Provisio 30.1 75 0.0016 35.9 5.1 54 153-212 350-403 (404)
100 PRK09864 putative peptidase; P 28.9 65 0.0014 36.3 4.3 32 4-41 36-67 (356)
101 PRK08652 acetylornithine deace 28.4 1E+02 0.0022 33.7 5.6 56 153-213 291-346 (347)
102 PRK07338 hypothetical protein; 28.2 93 0.002 35.0 5.5 55 154-214 345-400 (402)
103 TIGR01246 dapE_proteo succinyl 24.8 1.3E+02 0.0027 33.5 5.7 52 154-211 319-370 (370)
104 PRK06133 glutamate carboxypept 23.3 1E+02 0.0022 35.0 4.7 57 154-214 353-409 (410)
105 PRK06837 acetylornithine deace 22.8 1.6E+02 0.0035 33.6 6.1 55 154-213 369-423 (427)
106 PF05421 DUF751: Protein of un 21.9 3.5E+02 0.0077 22.8 6.3 27 487-513 15-41 (61)
107 TIGR02921 PEP_integral PEP-CTE 21.6 1.5E+03 0.033 27.6 18.6 27 322-348 148-174 (952)
108 PRK05469 peptidase T; Provisio 21.5 1.6E+02 0.0035 33.2 5.8 54 154-213 353-406 (408)
109 PRK08554 peptidase; Reviewed 21.4 1.4E+02 0.003 34.5 5.2 54 153-212 384-437 (438)
110 PRK13009 succinyl-diaminopimel 21.3 1.7E+02 0.0037 32.4 5.9 52 155-212 323-374 (375)
111 PF05297 Herpes_LMP1: Herpesvi 21.0 32 0.0007 37.3 0.0 122 239-393 36-179 (381)
112 PRK06446 hypothetical protein; 20.9 2.2E+02 0.0047 32.6 6.8 55 156-213 379-435 (436)
113 TIGR01882 peptidase-T peptidas 20.8 1.1E+02 0.0024 34.7 4.3 54 153-212 354-407 (410)
No 1
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=100.00 E-value=3.8e-126 Score=1094.63 Aligned_cols=683 Identities=31% Similarity=0.502 Sum_probs=603.1
Q ss_pred CceEEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCCCCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCc
Q 004095 2 GRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 81 (774)
Q Consensus 2 g~~~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aE 81 (774)
||+++|++++||++||+||+ +..+.+||++||+||++++|||+|||+|||+|||++|++.+.....+|+|+|+||+||
T Consensus 120 ~~~~~Y~~i~NIvVki~~k~--~~~~~~lLlnaHfDSvpt~~gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLfNgaE 197 (834)
T KOG2194|consen 120 GMTLVYQNISNIVVKISPKN--GNDKNALLLNAHFDSVPTGPGATDDGSGVASMLEALRVLSKSDKLLTHSVVFLFNGAE 197 (834)
T ss_pred hhhheeeeeeeEEEecCCCC--CCccceeeeeccccccCCCCCCCcchhHHHHHHHHHHHhhcCCCcccccEEEEecCcc
Confidence 68899999999999999984 3445699999999999999999999999999999999999987788999999999999
Q ss_pred CCCCcchHHHHhhCCCccCceEEEEeccCCCCCCcceeecCCChHHHHHHHHHhcCCCCcccchhccccCCCCCCCchHH
Q 004095 82 EEGLNGAHSFVTQHPWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQV 161 (774)
Q Consensus 82 E~gl~GS~~fv~~h~~~~~i~a~INLD~~G~gg~~~lfq~g~~~~li~~~~~~a~~P~~~~~~~d~f~~g~ips~TD~~~ 161 (774)
|.+++|||+|++||||+++|+++||||++|+||++++||+||++|+++.|+++++||+++++++|+||+|+|||+|||++
T Consensus 198 E~~L~gsH~FItQH~w~~~~ka~INLea~GsGGreiLFQagp~~wl~k~Y~~~~phPf~stlgee~Fq~g~IpSdTDfri 277 (834)
T KOG2194|consen 198 ESGLLGSHAFITQHPWSKNIKAVINLEAAGSGGREILFQAGPNHWLLKAYLQAAPHPFASTLGEELFQSGIIPSDTDFRI 277 (834)
T ss_pred cchhhhcccceecChhhhhhheEEeccccCcccceeEEecCCchHHHHHHHhhCCCchhhhhHHHhhhcCcCccccchHH
Confidence 99999999999999999999999999999999999999999977999999999999999999999999999999999999
Q ss_pred HhhcCCCeEEEEeeeCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccCCCCCCceEEeeccC
Q 004095 162 YKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLPKGNAMEKEGKTVHETAVYFDILG 241 (774)
Q Consensus 162 F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~la~~~~l~~~~~~~~~~~~~~~~~vyfd~~g 241 (774)
|++++|+||+|+|+..|++.|||++|.++++.++++||+|+|++++++.++|+ ++.+ .+..+++ +||||++|
T Consensus 278 f~eyg~l~GLD~A~~~Ng~vYHTk~D~~~~i~~gs~q~tGen~L~~v~~lan~-el~~------~~~~~~g-~vyfdv~g 349 (834)
T KOG2194|consen 278 FREYGHLPGLDMAFVKNGYVYHTKYDGIQYIPPGSLQHTGENILALVRSLANS-ELDN------STERSKG-TVYFDVVG 349 (834)
T ss_pred HHHhCCcccceeeeeeccceEEeecccccccCcchhhhhhhHHHHHHHHHhch-hhcc------ccccCCC-ceehhhhh
Confidence 99999999999999999999999999999999999999999999999999998 5432 3445566 99999999
Q ss_pred ceEEEEechhHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcceeech
Q 004095 242 TYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANP 321 (774)
Q Consensus 242 ~~~v~y~~~~~~~l~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~~~~~~~~s~~ 321 (774)
++|+.|+++++++||+.++ +.++ ....+.+.+.+.++.+.++.+++++++++++++++|++++.++ .+|+||++|
T Consensus 350 ~~~~~y~~~~~~iLNi~i~---~~i~-l~~~~~g~~~~~~f~~~~~~~i~s~~~~~~l~~~~a~~l~~v~-l~~sw~s~p 424 (834)
T KOG2194|consen 350 KYFLAYSESTGVILNITIC---ISIW-LMSLRSGSSQLGKFILACLLQILSIVVAIGLPVLVALFLDWVG-LPLSWFSNP 424 (834)
T ss_pred hhhheeehhhhhhhhhhhh---hhhh-hhhhcccchhhhhHHHHHHHHHHHHHHHHhhHHHHHHHhhccc-ccceeecch
Confidence 9999999999999993322 2222 3344444345889999999999999999999999999999995 599999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch
Q 004095 322 WLAVGLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGST 401 (774)
Q Consensus 322 ~l~i~ly~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~~~~s~ 401 (774)
|+++|+|.||+++|+.+++.++.. . .+ +.++ ..++.+++++|+ +|++|++++|++++||+
T Consensus 425 ~l~~~ly~~p~~~gl~~~~~~y~~-~---~~-----~~~~--------~~~~~~ql~~h~---~l~~l~~~~t~y~I~S~ 484 (834)
T KOG2194|consen 425 WLLLGLYYLPSLFGLAILQALYAK-R---SK-----RHSL--------EYLQHDQLLLHS---LLSILLIIMTYYGIRSA 484 (834)
T ss_pred HHHHHHHHhHHHHHhhHHHHHHHh-h---cc-----cccc--------chhhHHHHHHHH---HHHHHHHHheecccchh
Confidence 999999999999999999887321 1 11 1111 113556777886 78888999999999999
Q ss_pred hHHHHHHhHHHHHHHHHHHhhCCCCCCCChHHHHHHHhhhHhHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhHHH
Q 004095 402 FIALFWLVPPAFAYGFLEATLTPVRFPRPLKLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVIL 481 (774)
Q Consensus 402 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~p~~gR~g~~~~~~pd~~~d~~I 481 (774)
|++++|+++++++ .++++..++|.++..|..++++||+.|+.+.+|.+++++.+|+|||||+|.+. ||| .+|
T Consensus 485 y~~~~~~~~~v~~--~~~~~~~~l~~~~~~~~~~~~i~~~~p~~~~ay~~~~~~~~fipm~Gr~g~~~--nPd----~~i 556 (834)
T KOG2194|consen 485 YLPLLLLLFYVIS--YLLNTLTILHLCGTLYLITLLICQVGPFLFAAYSTYSLVRTFIPMMGRFGNAS--NPD----LSI 556 (834)
T ss_pred HHHHHHHHHHHHH--HHHhhceeeccCCceeeeeeeeeehHhHHHHHHHHHHHHHeeeccccccCCCC--Cch----HHH
Confidence 9999999999999 55778889999999999999999999999999999999999999999999765 996 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHHHhCCCCCCCCCC-cceeEEEEEEecccCCCCC---CC
Q 004095 482 AVFIAVVLCLTLVYLLSYVHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSEDT-ARAVNVVHVVDASGKFGGK---QE 557 (774)
Q Consensus 482 a~~~a~~~~l~~~~l~P~i~~~~~~~~i~~~l~~~~~~~~~~~~~~~~fPy~~~t-~~Rv~~~Hv~~~f~~~d~~---~d 557 (774)
|.++++++.+.++|++|++|+||+++.|+.+++.++.+++.+++|.++|||++++ +||++++|++|+||+++|. +|
T Consensus 557 ~~~~~~~~~l~~~f~i~l~~~fr~~~~i~~~l~~I~~~~~~i~~T~~~fPy~~~~~~~r~~~lH~~rtf~~~~~~~~~~d 636 (834)
T KOG2194|consen 557 SFLNAFGANLIVGFLIPLVHLFRRSKSIILGLFGITAVILIIASTSIGFPYRPKTTVQRVPVLHVRRTFYDRDGTSSQND 636 (834)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHhcCCcCCccccccceeEEEEecccceecccCceeecc
Confidence 9999999999999999999999999999999988888887778999999999875 5799999999999999976 79
Q ss_pred CcceeecccCCCCC--------chhhH---HhhcccccCCCCcccccccceeeeeeEeecCCCCcccCCCCC-------e
Q 004095 558 PSSFIALYSTTPGK--------LTKEV---EQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVP-------T 619 (774)
Q Consensus 558 ~~~~~~l~~~~~~~--------l~~~~---~~c~~~~~Cg~p~~~~f~~~~~y~~~~~~~~~~~~W~p~~~p-------~ 619 (774)
+++++...|+.... +++++ .+|+.+++||+| +|+ |.+.+.+++|+|+++| .
T Consensus 637 s~~~i~~~D~r~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p---------~y~--w~~~~~~~~~vp~~~~v~~~~~~~ 705 (834)
T KOG2194|consen 637 SGYFINSQDRRGAEVLPFTKSNLTDLSSVQADCDDEMMCGMP---------VYN--WIKPREQSLWVPNPEPVIGPYPPN 705 (834)
T ss_pred cceeeeecccccccCCcchhhcccccccccccccccccCCce---------eee--ccccCccceEecCCccccCCCCce
Confidence 99999988755322 33332 468999999999 887 9999999999999876 4
Q ss_pred eeeeccccccccccccCCCceEEEEEEECCCCcEEEEEec---eeecceeeecCCcccccCCCCCCCCCcEEEEEEcC-C
Q 004095 620 IHVESEGFGIMDTKGNDNGRITKVSIDMKGSVRWSLAIDA---EEIEDFTFKEGSEELVPRDEKSGMDGWHIIQFSGG-K 695 (774)
Q Consensus 620 l~~~s~~~~~~~~~~~~~~~~~r~~f~~~g~~~~sl~i~p---~~i~~wSf~~~~~~~~~~~~~~~~~~~~~i~~s~G-~ 695 (774)
+.+++| +..++++.|++|++.|++|+++||+| +++.+|||.+. + ..+ + ..+|+||++|| +
T Consensus 706 l~l~sk--------~~~~~~~~r~~~~i~~~d~~s~~i~p~~d~~~~~wsf~~~---~--~~~--~-~~~~~i~~~yg~~ 769 (834)
T KOG2194|consen 706 LKLLSK--------TSLDNGNLRYEFSITGTDHISLFISPLNDVKVLDWSFTTS---P--LTE--N-KTPYHIYFSYGLD 769 (834)
T ss_pred EEEeec--------cccCCCceEEEEEEeccCceEEEEEecCCceEEEEeccCC---c--ccc--c-CCceEEEEEeecC
Confidence 566666 44457789999999999999999999 59999999644 3 333 2 22699999999 8
Q ss_pred CCceEEEEEEEeccCCcccccccccccCCCceEEEe------ccccCCCHHHHHHHhcCCCccccccCCCCcccccc
Q 004095 696 NAVSKFDLDLYWAKNSTESYHNANRKEKQRPLLKLR------TDFDRLTPKTERVLSKLPAWCSLFGKSTSPQTLSF 766 (774)
Q Consensus 696 ~~P~~F~l~l~~~~~~~~~~~~~~~~~~~~p~~~l~------~~~~~~t~~~~~~l~~fP~wa~~~gk~~~p~~l~~ 766 (774)
+.|++||||+++. ++++++| +|++ +|.+++||+.++|+++||+||..++|++|+....|
T Consensus 770 ~~p~~F~lel~~~-----------~~~~~v~-~k~~~~~h~~~~~~~~t~~~~~~~~~lP~~~~~~~~~~~~~~~~~ 834 (834)
T KOG2194|consen 770 STPLNFWLELEKE-----------EGVTDVP-FKLGVSAHYIHDLELITPEYKEFLETLPSWAATVDWSTSYESWIF 834 (834)
T ss_pred CCCceEEEEEeec-----------cCccCCc-eEEeeeeeeccchhhcCHHHHHHHHhCCchhhccccccchhheeC
Confidence 9999999999999 5688888 8888 57889999999999999999999999999987654
No 2
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.97 E-value=1.1e-30 Score=260.19 Aligned_cols=170 Identities=31% Similarity=0.481 Sum_probs=130.7
Q ss_pred CeEEEeecccCcC------CCCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCcchHHHHhh-CCCccC
Q 004095 28 NAILVSSHIDTVF------AAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ-HPWSTT 100 (774)
Q Consensus 28 ~~ILl~AHyDS~~------~spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~GS~~fv~~-h~~~~~ 100 (774)
++|+|+|||||++ .++||+||++|||+|||+||.|++.+.+++|+|+|+||+|||.|+.||++|+++ +.+.++
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~~~~~~~~~~~ 80 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAFVEHDHEELDN 80 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHHHHHHHCHHHH
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHHHHhhhccccc
Confidence 4799999999988 889999999999999999999999777889999999999999999999999963 356789
Q ss_pred ceEEEEeccCCCCCCcceeecCC-ChHHHHHHHHHhcCCCCcccchhccccCCCCCCCchHHHhhcCCCeEEEEeeeC-C
Q 004095 101 IRVAIDLEAMGIGGKSGLFQAGP-HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTD-K 178 (774)
Q Consensus 101 i~a~INLD~~G~gg~~~lfq~g~-~~~li~~~~~~a~~P~~~~~~~d~f~~g~ips~TD~~~F~~~~GIPgld~a~~~-~ 178 (774)
+.++||+|++|.+++....+..+ .++.++.+.+....+.......+.......+..+||.+|.. .|||++.+.... .
T Consensus 81 ~~~~inlD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sD~~~F~~-~gip~~~~~~~~~~ 159 (179)
T PF04389_consen 81 IAAVINLDMIGSGDPTVYSEGSPSLPSRLEAYLSSFKQPYGSSLGPDVPPEKPTFGGSDHYPFSK-AGIPAVTLSSTDGY 159 (179)
T ss_dssp EEEEEEECSSBSSSSEEEEEEGGGHHHHHHHHHHHHHHHHHCHTSSECEEEESSTTSSTCHHHHT-TT-EEEEEEESSSS
T ss_pred ceeEEeccccccCcccceeeeeccccchhhhhhhhhhhhhhcccccccccccCCCCCCCcHhhhc-CCEeEEEEEecCCC
Confidence 99999999999988887777555 23434444333322322222222332223456799999997 999999998887 6
Q ss_pred CCCCCCcCCCcCCCCHHHHH
Q 004095 179 SAVYHTKNDKLDLLKPGSLQ 198 (774)
Q Consensus 179 ~~~YHT~~Dt~d~id~~slq 198 (774)
.+.|||+.||++++++++||
T Consensus 160 ~~~~Ht~~Dt~~~~~~~~l~ 179 (179)
T PF04389_consen 160 NPYYHTPEDTPDNLDPDTLQ 179 (179)
T ss_dssp GTTTTSTT-SGGGC-HHHH-
T ss_pred CCCCCCcccChhhcCCccCC
Confidence 78999999999999999987
No 3
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=99.92 E-value=5.3e-25 Score=256.99 Aligned_cols=209 Identities=22% Similarity=0.302 Sum_probs=166.5
Q ss_pred eEEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCCCCCCCCChhHHHHHHHHHHHHHH---cCCCCCccEEEEEeCC
Q 004095 4 TLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQ---WAHGFKNAVIFLFNTG 80 (774)
Q Consensus 4 ~~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~spGA~DngsGvAvmLElaR~L~~---~~~~p~~~IiFlf~~a 80 (774)
+..-..++||||+|+|. +++|++|+|+||+|||. +||.|+++|+|+|+|++|.+.. .+|+|+|+|+|++|||
T Consensus 332 ~~~~~ki~NIig~I~Gs---~epD~~ViigahrDSw~--~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdA 406 (702)
T KOG2195|consen 332 TREETKIQNIIGKIEGS---EEPDRYVIIGAHRDSWT--FGAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDA 406 (702)
T ss_pred eeeeeeeeeEEEEEecC---cCCCeEEEEeccccccc--cCCcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccc
Confidence 45567899999999996 47999999999999997 7899999999999999999875 5899999999999999
Q ss_pred cCCCCcchHHHHhhCC--CccCceEEEEeccCCCCCCcceeecCC-ChHHHHHHHHHhcCCCCcccchhccccCCCCCCC
Q 004095 81 EEEGLNGAHSFVTQHP--WSTTIRVAIDLEAMGIGGKSGLFQAGP-HPWAVENFAAAAKYPSGQVTAQDLFASGAITSAT 157 (774)
Q Consensus 81 EE~gl~GS~~fv~~h~--~~~~i~a~INLD~~G~gg~~~lfq~g~-~~~li~~~~~~a~~P~~~~~~~d~f~~g~ips~T 157 (774)
||.|+.||..|+++|. ...++.++||+|+++.++.....++.| ...+++.-.+..+.|........+ .....+|
T Consensus 407 eEfGliGStE~~E~~~~~L~~~av~yin~d~~~~~~~~l~~~~~PlL~~li~~~~k~~~~p~~~~~~~~v---~~~g~~S 483 (702)
T KOG2195|consen 407 EEFGLLGSTEWAEEYLKNLKSRAVVYINVDNAVLGDYTLHVKTTPLLTDLIEEAAKSVLSPDKGDQSNRV---LSLGGGS 483 (702)
T ss_pred hhccccccHHHHHHHHHHhhheeEEEEeccccccCCceeEEecCccHHHHHHHHHhccCCCCccccceeE---eccCCCC
Confidence 9999999999999884 357899999999999876555555555 244555555555666654332211 1236899
Q ss_pred chHHHhhcCCCeEEEEeeeCCCCCCCCcCCCcCCC----CHH--HHHHHHHHHHHHHHHHhcCCCCCCC
Q 004095 158 DFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLL----KPG--SLQHLGENMLAFLLQAASSTSLPKG 220 (774)
Q Consensus 158 D~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i----d~~--slq~~g~~vl~~v~~la~~~~l~~~ 220 (774)
||.+|..+.|||+++++|...++.|||.+||++.+ |+. .+..++.+....+..+++.+.+|-+
T Consensus 484 d~~~F~~~~GIpsv~~~f~~~yP~yhs~~dt~~~~~k~~D~~~~~~~~~a~~~~~~~l~l~~d~llPfd 552 (702)
T KOG2195|consen 484 DYASFLQFAGIPSVDFAFNRTYPFYHSTYDTYEWLDKLLDPKFKQHLAAAGVLGLELLILADDPLLPFD 552 (702)
T ss_pred cchhhccccCcceeeeeecCCcceeecccCcHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCccccCc
Confidence 99999999999999999999999999999995433 443 4445666666667777776666643
No 4
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.88 E-value=6.2e-22 Score=215.29 Aligned_cols=195 Identities=23% Similarity=0.351 Sum_probs=142.3
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecccCcC--------------CCCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEE
Q 004095 10 LNHIVLRIQPKYASEAAENAILVSSHIDTVF--------------AAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIF 75 (774)
Q Consensus 10 ~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~--------------~spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiF 75 (774)
..|||++++|+ .++.|+++||+||++ ..+||+||++|||+|||++|.|++. +++++|+|
T Consensus 97 g~nVIa~~~G~-----~~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~--~~~~~I~f 169 (346)
T PRK10199 97 GSTVIAAHEGK-----APQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNV--PTEYGIRF 169 (346)
T ss_pred cceEEEEECCC-----CCCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhC--CCCCcEEE
Confidence 46899999885 347899999999985 2479999999999999999999864 57889999
Q ss_pred EEeCCcCCCCcchHHHHhhCCC--ccCceEEEEeccCCCCCCcceeecCCC-hHHH-----HHHHHHhcCCCCcccch--
Q 004095 76 LFNTGEEEGLNGAHSFVTQHPW--STTIRVAIDLEAMGIGGKSGLFQAGPH-PWAV-----ENFAAAAKYPSGQVTAQ-- 145 (774)
Q Consensus 76 lf~~aEE~gl~GS~~fv~~h~~--~~~i~a~INLD~~G~gg~~~lfq~g~~-~~li-----~~~~~~a~~P~~~~~~~-- 145 (774)
+++++||.|+.||+.|+++.+. .+++.++||+|+++.+ ....+..|.+ ...+ +...+.+ ...|..+..
T Consensus 170 v~~~~EE~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~-d~~~~~~g~~~~~~~~~~~~d~~~~~a-~~~g~~~~~~~ 247 (346)
T PRK10199 170 VATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVG-DKLYFNSGVNTPEAVRKLTRDRALAIA-RRHGIAATTNP 247 (346)
T ss_pred EEECCcccCcHHHHHHHHhcCccchhcEEEEEEeccCCCC-CceEEecCCCcHHHHhHHHHHHHHHHH-HHcCCccccCC
Confidence 9999999999999999987543 4789999999999875 4445554442 2111 1111111 122222211
Q ss_pred ---hccccCCCCCCCchHHHhhcCCCeEEEEeee-------------------CCCCCCC-CcCCCcCCCCH-------H
Q 004095 146 ---DLFASGAITSATDFQVYKEVAGLSGLDFAYT-------------------DKSAVYH-TKNDKLDLLKP-------G 195 (774)
Q Consensus 146 ---d~f~~g~ips~TD~~~F~~~~GIPgld~a~~-------------------~~~~~YH-T~~Dt~d~id~-------~ 195 (774)
..+..| ....|||.+|.+ .|||.+.+... ..+..+| |.+|+.+.++. .
T Consensus 248 ~~~~~~p~g-~~~rSDH~~F~~-~GIP~l~~~a~n~~~g~~d~~~q~~~~~~~~~g~~~h~~~~d~~~~l~~~~pgri~~ 325 (346)
T PRK10199 248 GLNKNYPKG-TGCCNDAEVFDK-AGIPVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIER 325 (346)
T ss_pred CccccccCC-CcCCcccHHHHh-cCCCeEEeeccccccCCcccceecccCccCCCCccccCcCcchHHHHHHhcchHHHH
Confidence 122223 235799999999 99999987432 1134589 89999998886 3
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 004095 196 SLQHLGENMLAFLLQAASST 215 (774)
Q Consensus 196 slq~~g~~vl~~v~~la~~~ 215 (774)
.++...+.++.++.+|++..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~ 345 (346)
T PRK10199 326 RCRDVVRIMLPLVKELAKAS 345 (346)
T ss_pred HHHhHHHHHHHHHHHHhccC
Confidence 56667888999999999863
No 5
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.77 E-value=2.9e-18 Score=194.00 Aligned_cols=192 Identities=25% Similarity=0.297 Sum_probs=137.4
Q ss_pred ccceEEEEEcCCCC-------CCCCCCeEEEeecccCcCCCCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCc
Q 004095 9 DLNHIVLRIQPKYA-------SEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 81 (774)
Q Consensus 9 ~~~NVI~~i~g~~~-------~~~~~~~ILl~AHyDS~~~spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aE 81 (774)
+..|+++++++... ....++.+++++|+|+++.+|||+||++|+|++||+||+|++. +|+++|+|+++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~--~p~~~v~f~~~~aE 260 (435)
T COG2234 183 TSKNVAATISGSSQIIEAIIGTAHSDSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGN--PPKRTVRFVAFGAE 260 (435)
T ss_pred EEEEEeeeeecccccceEEEeccCCCceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcC--CCCceEEEEEecch
Confidence 55677777766511 1246789999999999999999999999999999999999975 49999999999999
Q ss_pred CCCCcchHHHHhhCC--CccCceEEEEeccCCCCCCcceeecC---CC--hHHHHHHHHHhcCCCCcccchhccccCCCC
Q 004095 82 EEGLNGAHSFVTQHP--WSTTIRVAIDLEAMGIGGKSGLFQAG---PH--PWAVENFAAAAKYPSGQVTAQDLFASGAIT 154 (774)
Q Consensus 82 E~gl~GS~~fv~~h~--~~~~i~a~INLD~~G~gg~~~lfq~g---~~--~~li~~~~~~a~~P~~~~~~~d~f~~g~ip 154 (774)
|.|+.||++|++++. ..+++.++||+|+.|..++...++.. .. ........+...++.... +. ....
T Consensus 261 E~Gl~GS~~~~~~~~~~~~~~~~~viN~Dm~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~ 334 (435)
T COG2234 261 ESGLLGSEAYVKRLSKDLDKKIALVINLDMLGSPNPTPTLILYGNGLERVPPGLRAVAALIGRPVDPS-----TV-QDFD 334 (435)
T ss_pred hhcccccHHHHhcCCcchhhhhheEEecccccCCCCCcceEEeccCCccccchHHHHHHHHHhhcccc-----cc-CCCC
Confidence 999999999997665 25778889999999987633322211 11 112222222212222111 11 1233
Q ss_pred CCCchHHHhhcCCCeEEEEeeeCC-----CCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 004095 155 SATDFQVYKEVAGLSGLDFAYTDK-----SAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQA 211 (774)
Q Consensus 155 s~TD~~~F~~~~GIPgld~a~~~~-----~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~l 211 (774)
..+||.+|.+ .|+|++.+..... ..++||..|| ++ +..+++..+..+.+.....
T Consensus 335 ~~sd~~~f~~-~gi~~~~~~~~~~~~~~~~~~~~t~~d~-~~-d~~~~~~~~~~~~~~~~~~ 393 (435)
T COG2234 335 PRSDHYPFTE-AGIPSLFLFSGAPGGVEAVAWGHTAADT-DK-DLSTLDQHGDAVAATLVLD 393 (435)
T ss_pred CCCcchhhhh-cCCcceeeeecCCccccccccccccccc-cc-chhhhcccchhhhhhhhhh
Confidence 5799999998 9999987765433 3589999999 88 8888888775555444433
No 6
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.1e-15 Score=154.74 Aligned_cols=195 Identities=19% Similarity=0.306 Sum_probs=144.8
Q ss_pred EEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCCC----CCCCCChhHHHHHHHHHHHHHHc----CCCCCccEEEEE
Q 004095 6 IYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAA----EGAGDCSSCVAVMLELARAMSQW----AHGFKNAVIFLF 77 (774)
Q Consensus 6 ~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~s----pGA~DngsGvAvmLElaR~L~~~----~~~p~~~IiFlf 77 (774)
-+.+..|||+++.+. .++++++.|||||+-.. .||.|.+..||+||++||.+.+. ...++-++.++|
T Consensus 101 g~~~f~nii~tl~~~-----A~r~lVlachydsk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvF 175 (338)
T KOG3946|consen 101 GTRNFNNLIATLDPN-----ASRYLVLACHYDSKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVF 175 (338)
T ss_pred eeeeeeeEEEecCCC-----cchheeeecccccccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEE
Confidence 467889999999875 57899999999997532 68999999999999999999872 235667899999
Q ss_pred eCCcC--------CCCcchHHHHhh------CC-----CccCceEEEEeccCCCCCCcc--eeecCCChHHHHH--H---
Q 004095 78 NTGEE--------EGLNGAHSFVTQ------HP-----WSTTIRVAIDLEAMGIGGKSG--LFQAGPHPWAVEN--F--- 131 (774)
Q Consensus 78 ~~aEE--------~gl~GS~~fv~~------h~-----~~~~i~a~INLD~~G~gg~~~--lfq~g~~~~li~~--~--- 131 (774)
+|||| +.++||++.+++ ++ ..+.+...+-+|-.|+.+++. .|.. ++.|.-+- .
T Consensus 176 FDGEEAf~eW~p~DSlYGsRhLA~~~~sw~~~~~r~~~~ld~idl~vLldllga~~p~f~~~~~~-t~~wF~Rl~~iE~~ 254 (338)
T KOG3946|consen 176 FDGEEAFEEWGPEDSLYGSRHLAAKWESWPHSGIRGDLLLDGIDLLVLLDLLGAPNPTFYNFFPN-TDRWFHRLQSIEGE 254 (338)
T ss_pred eccHHHHhhcCCccccchHHHHHHHHhccCCCCCccccccccchHhhhHHHhcCCChhHhhcCcc-hHHHHHHHHHHHHH
Confidence 99998 468999999877 12 236788888899999887764 2221 23343211 1
Q ss_pred -HHH---hcCCCCcccchhccccCCCC--CCCchHHHhhcCCCeEEEEeeeCCCCCCCCcCCCcCCCCHHHHHHHHHHHH
Q 004095 132 -AAA---AKYPSGQVTAQDLFASGAIT--SATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENML 205 (774)
Q Consensus 132 -~~~---a~~P~~~~~~~d~f~~g~ip--s~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl 205 (774)
.+. ..++.. ...|+.+... -+.||.+|.+ .|+|.+.+.......++||+.|+..++|..+..|++..+.
T Consensus 255 l~~~g~l~s~r~~----~~~Fq~~~~~~~veDDHiPFlr-rgVPVLHlI~~pFPsvWHt~dD~e~nldy~tt~~~~lilr 329 (338)
T KOG3946|consen 255 LALLGLLASHRLP----PRYFQPGGLSSVVEDDHIPFLR-RGVPVLHLIPVPFPSVWHTPDDNERNLDYATTDNLALIIR 329 (338)
T ss_pred HHHHHHHHhccCC----chhccccCccccccCCcchhhh-cCCceEEecCCCCcccccCccchhhcCCchhHHHHHHHHH
Confidence 111 122211 1124433221 3689999999 9999999988887889999999999999999999998887
Q ss_pred HHHHHH
Q 004095 206 AFLLQA 211 (774)
Q Consensus 206 ~~v~~l 211 (774)
-++.+-
T Consensus 330 ~Fv~ey 335 (338)
T KOG3946|consen 330 VFVAEY 335 (338)
T ss_pred HHHHHH
Confidence 776653
No 7
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=99.37 E-value=2.3e-12 Score=139.84 Aligned_cols=176 Identities=20% Similarity=0.212 Sum_probs=107.7
Q ss_pred CCCCeEEEeecccCcCCCCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCcchHHHHhhCCC-c-cCce
Q 004095 25 AAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPW-S-TTIR 102 (774)
Q Consensus 25 ~~~~~ILl~AHyDS~~~spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~GS~~fv~~h~~-~-~~i~ 102 (774)
++++.|++++|.+|.. -||||.||+|++.++||.|++. +.+.+.+|+|.. +-.||-.|+.+|.. . ++++
T Consensus 127 ~s~~EillsthiCHPs---mANdnLSG~~v~~~La~~L~~~--~~rytYRflf~P----eTIGsI~yLskn~~~l~~~v~ 197 (386)
T PF09940_consen 127 ESDEEILLSTHICHPS---MANDNLSGPAVLTFLAKWLKQL--PNRYTYRFLFVP----ETIGSITYLSKNLDELKKNVK 197 (386)
T ss_dssp SSS-EEEEEEE----S----TTTTHHHHHHHHHHHHHHTTS----SSEEEEEEE-----TTHHHHHHHHH-GGGGGG-EE
T ss_pred CCCCeEEEEEeccCcc---cccccccHHHHHHHHHHHHhcC--CcCceEEEEEcc----ccHHHHHHHHHCHHHHhhhee
Confidence 3678899999999986 6999999999999999999975 455999999998 57999999999864 3 4599
Q ss_pred EEEEeccCCCCCCcceeecCCChHHHHHHHHH-hcCCCCcccchhccccCCCCCCCchHHHhhcC-CCeEEEEee--eCC
Q 004095 103 VAIDLEAMGIGGKSGLFQAGPHPWAVENFAAA-AKYPSGQVTAQDLFASGAITSATDFQVYKEVA-GLSGLDFAY--TDK 178 (774)
Q Consensus 103 a~INLD~~G~gg~~~lfq~g~~~~li~~~~~~-a~~P~~~~~~~d~f~~g~ips~TD~~~F~~~~-GIPgld~a~--~~~ 178 (774)
+-++|.++|..|.-...++..+...++...+. .++-.... ..+ .+.|.++|.|+|..-+ ++|...+.- ++.
T Consensus 198 ~G~vLtcvGD~~~~syk~Sr~g~~~iDr~~~~vl~~~~~~~---~~~--~F~~~GsDERQfcSPG~dLPv~~~~Rs~yg~ 272 (386)
T PF09940_consen 198 AGLVLTCVGDDGAYSYKRSRRGNTLIDRAAAHVLKHSGPNF---KIY--DFLPRGSDERQFCSPGFDLPVGSLMRSKYGE 272 (386)
T ss_dssp EEEE--S--SSS-EEEE--TTSSSHHHHHHHHHHHHSSS-E---EEE-----S-SSTHHHHTSTTT---EEEEESS-TT-
T ss_pred eeEEEEEecCCCCcceecCCCCCcHHHHHHHHHHHhcCCCc---eEe--cccccCCCcceeecCCcCCceeeeecccccC
Confidence 99999999987644344332234455443322 11111000 111 2456789999999721 245443322 133
Q ss_pred CCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q 004095 179 SAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 214 (774)
Q Consensus 179 ~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~la~~ 214 (774)
.+.|||..|+++.|+++.|+..-+.+..++..|-+.
T Consensus 273 ypEYHTS~Dnl~fi~p~~L~~s~~~~~~~i~~lE~n 308 (386)
T PF09940_consen 273 YPEYHTSLDNLDFISPEGLEGSFEVLLEAIEILENN 308 (386)
T ss_dssp -TTTTBTTSSGGG--HHHHHHHHHHHHHHHHHHHH-
T ss_pred CcccccCCCccccCCHHHHHHHHHHHHHHHHHHhcC
Confidence 568999999999999999999999999888877654
No 8
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=99.32 E-value=3.1e-11 Score=126.16 Aligned_cols=167 Identities=21% Similarity=0.283 Sum_probs=115.0
Q ss_pred CeEEEeecccCcC----CCCCCCCChhHHHHHHHHHHHHHHc---CCCCCccEEEEEeCCcCCCCcchHHHHhhC-----
Q 004095 28 NAILVSSHIDTVF----AAEGAGDCSSCVAVMLELARAMSQW---AHGFKNAVIFLFNTGEEEGLNGAHSFVTQH----- 95 (774)
Q Consensus 28 ~~ILl~AHyDS~~----~spGA~DngsGvAvmLElaR~L~~~---~~~p~~~IiFlf~~aEE~gl~GS~~fv~~h----- 95 (774)
+.|++.|.+||.. .+|||+++++|.+++|++||+|++. ....+++|+|+|++||..|..||+.|+.+-
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~f 80 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGNF 80 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHHHHcCcC
Confidence 4799999999975 4799999999999999999999874 246789999999999999999999998542
Q ss_pred C--------C-ccCceEEEEeccCCCCCC-cceee-cCC--C---hHHHHHHHHHhcCCCC--cccchhccccCCCCCCC
Q 004095 96 P--------W-STTIRVAIDLEAMGIGGK-SGLFQ-AGP--H---PWAVENFAAAAKYPSG--QVTAQDLFASGAITSAT 157 (774)
Q Consensus 96 ~--------~-~~~i~a~INLD~~G~gg~-~~lfq-~g~--~---~~li~~~~~~a~~P~~--~~~~~d~f~~g~ips~T 157 (774)
| . .++|..+|.++.+|..+. ....+ .++ + ....+...+..+.+-. ....+..-...-+|..+
T Consensus 81 ~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~~s~~~~~~~~~~~~~~~~~LPPsS 160 (234)
T PF05450_consen 81 PSDSLQFQPISLDNIDSVIELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAAKSLASSNIVIKKASSSNPPLPPSS 160 (234)
T ss_pred cccccccccccHHHCCEEEEeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHHHhccccccceeccccCCCCCCcch
Confidence 2 1 269999999999997655 32222 121 1 1233333322222211 11111111112355556
Q ss_pred chHHHhhcCCCeEEEEeeeCC---CCCCCCcCCCcCCCCH
Q 004095 158 DFQVYKEVAGLSGLDFAYTDK---SAVYHTKNDKLDLLKP 194 (774)
Q Consensus 158 D~~~F~~~~GIPgld~a~~~~---~~~YHT~~Dt~d~id~ 194 (774)
=++..++..++||+-++-.+. ..+||+.+|+.++++.
T Consensus 161 ~~sFLr~~~~i~~vVLtd~~~~f~N~~y~S~~D~~~ni~~ 200 (234)
T PF05450_consen 161 LQSFLRKDPNIPGVVLTDHDSQFTNKYYNSILDDAENINF 200 (234)
T ss_pred HHHHHccCCCCCEEEecCCCcccccCCccCcccChhhhcC
Confidence 555555545899998876654 4689999999998876
No 9
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=99.25 E-value=1e-10 Score=124.91 Aligned_cols=175 Identities=17% Similarity=0.201 Sum_probs=123.7
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecccCcCCCCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCCCC----
Q 004095 10 LNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGL---- 85 (774)
Q Consensus 10 ~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl---- 85 (774)
..|+|+.=. ..++.++++||.|||. -|+.||-.|++...|+++.|...+ ..+-++.++|||.|+
T Consensus 178 ~y~~Ia~~~------~en~vv~i~AH~DHW~--~G~tDN~lg~~~AV~~~~~lr~~~----~~~~lv~FtAEE~g~p~~~ 245 (486)
T COG4882 178 DYNVIAVDG------GENGVVLIGAHLDHWY--TGFTDNILGVAQAVETAGRLRGRG----LAAGLVVFTAEEHGMPGMA 245 (486)
T ss_pred EEEEEEecC------CCCCceEEeechhhhh--hcccchhhhHHHHHHHHHHHhhcC----cceeEEEEeccccCCCCCc
Confidence 456766432 3467899999999998 699999999999999999998753 456678889999876
Q ss_pred -----cchHHHHhhCCCccCceEEEEeccCCCCCCcceeecCCChHHHHHHHHHhcCCCCcccchhccccCCCCCCCchH
Q 004095 86 -----NGAHSFVTQHPWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQ 160 (774)
Q Consensus 86 -----~GS~~fv~~h~~~~~i~a~INLD~~G~gg~~~lfq~g~~~~li~~~~~~a~~P~~~~~~~d~f~~g~ips~TD~~ 160 (774)
.||+.|.++.+..+++.+.+|+|.+|.+-. .. ..-|.+.+.-++.-+... -.++. -.|-.
T Consensus 246 sfyWa~GSr~~lk~~k~~~~v~~~VN~Dv~g~~~l--v~--~~~P~L~e~~~~~g~~~v---espe~--------y~Ds~ 310 (486)
T COG4882 246 SFYWAAGSRGLLKESKAAEEVEAYVNFDVAGYRCL--VA--SGAPQLVEHALEAGAVEV---ESPEP--------YCDSI 310 (486)
T ss_pred ceeecccchHHHhhcCCchhhhheeccccccccch--hh--hcChHHHHHHHHhCCcee---cCCCc--------ccchh
Confidence 489999988888899999999999986422 11 234667766655422111 11233 25666
Q ss_pred HHhhcCCCeEEEEeeeCC---CCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhc-CCCCC
Q 004095 161 VYKEVAGLSGLDFAYTDK---SAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAAS-STSLP 218 (774)
Q Consensus 161 ~F~~~~GIPgld~a~~~~---~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~la~-~~~l~ 218 (774)
.+.. .|||++.+....+ ...|||+.||+...| ..-.++.+..++++ ..+.|
T Consensus 311 ~y~~-aGiPS~Ti~SL~~~~~~e~yh~p~Dtpa~~~------n~~t~~d~a~r~v~~~ie~p 365 (486)
T COG4882 311 MYAW-AGIPSLTIHSLWCPGVQEAYHTPRDTPASWD------NAWTAVDAAVRTVTRGIEWP 365 (486)
T ss_pred hhhh-cCCCeeEeeeccCCCccceecCCCCCchhHH------HHHHHHHHHHHHHhcCCCCC
Confidence 7777 8999999987653 457999999995332 23344455555554 34433
No 10
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=99.12 E-value=6.5e-10 Score=121.13 Aligned_cols=198 Identities=19% Similarity=0.199 Sum_probs=135.4
Q ss_pred ccceEEEEEc-CCCC-C-CCCCCeEEEeecccCcCC----CCCCCCChhHHHHHHHHHHHHHHc----CCCCCccEEEEE
Q 004095 9 DLNHIVLRIQ-PKYA-S-EAAENAILVSSHIDTVFA----AEGAGDCSSCVAVMLELARAMSQW----AHGFKNAVIFLF 77 (774)
Q Consensus 9 ~~~NVI~~i~-g~~~-~-~~~~~~ILl~AHyDS~~~----spGA~DngsGvAvmLElaR~L~~~----~~~p~~~IiFlf 77 (774)
.+.||.|++. |-.+ + .+.-+.|++.||||+-+. ++||+.||||++++||++|.+++. ..+++.++.|+.
T Consensus 192 ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~l 271 (555)
T KOG2526|consen 192 KILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFIL 271 (555)
T ss_pred ccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEE
Confidence 5689999998 4211 1 124489999999999653 689999999999999999999982 356789999999
Q ss_pred eCCcCCCCcchHHHHhhCC--CccCceEEEEeccCCCCCCcc-eeecCC--ChHHHHHHHH----HhcCCCCcccchhcc
Q 004095 78 NTGEEEGLNGAHSFVTQHP--WSTTIRVAIDLEAMGIGGKSG-LFQAGP--HPWAVENFAA----AAKYPSGQVTAQDLF 148 (774)
Q Consensus 78 ~~aEE~gl~GS~~fv~~h~--~~~~i~a~INLD~~G~gg~~~-lfq~g~--~~~li~~~~~----~a~~P~~~~~~~d~f 148 (774)
.+|.-...+|++.|++-.. .++++..+|++|++|.+..+. +..+-| +...+..+-+ .+++-.-.. ...-
T Consensus 272 t~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mHvsKpP~dnt~i~qffr~l~svAek~~~~v--~~kh 349 (555)
T KOG2526|consen 272 TAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMHVSKPPSDNTVIAQFFRRLNSVAEKKNIEV--VTKH 349 (555)
T ss_pred ccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEEccCCCCcchHHHHHHHHhhhhchhcceEE--EEEe
Confidence 9999999999999996432 357999999999999875444 443333 3344444332 222221000 0000
Q ss_pred ccCCCCC-----CCchHHHhhcCCCeEEEEeeeCC--CCCCCCcC-CCcCCCCHHHHHHHHHHHHHHHHHH
Q 004095 149 ASGAITS-----ATDFQVYKEVAGLSGLDFAYTDK--SAVYHTKN-DKLDLLKPGSLQHLGENMLAFLLQA 211 (774)
Q Consensus 149 ~~g~ips-----~TD~~~F~~~~GIPgld~a~~~~--~~~YHT~~-Dt~d~id~~slq~~g~~vl~~v~~l 211 (774)
+ .|.- .=.|.-|.- ..+|++.+..... .+.-.+.. |+..++|.+++-+..+.+.+.+...
T Consensus 350 k--kInla~s~lAWEHErFsi-kR~pAfTLS~l~Sprdp~rnsi~~d~rsrldedtLi~ntRlIaEAla~~ 417 (555)
T KOG2526|consen 350 K--KINLASSRLAWEHERFSI-KRMPAFTLSTLPSPRDPARNSILLDLRSRLDEDTLIDNTRLIAEALAGY 417 (555)
T ss_pred e--eEeeccchhhhhhhhhhh-hcccceeeccCCCCcchhhccccccchhhhhhhhhhhhhhHHHHHHHHH
Confidence 0 1111 224666765 6799999887643 23456666 9999999998887666665544443
No 11
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=99.01 E-value=1.8e-09 Score=107.61 Aligned_cols=165 Identities=26% Similarity=0.328 Sum_probs=117.1
Q ss_pred EEeecccCcCC-------------------CCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCc-chHH
Q 004095 31 LVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLN-GAHS 90 (774)
Q Consensus 31 Ll~AHyDS~~~-------------------spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~-GS~~ 90 (774)
|+.+|+|+++. ++|+.|+..|++.++.++|.+++.+.+++++|+|++..+||.|.. |++.
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~~~ 80 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGAKH 80 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHHHH
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchhhh
Confidence 68899999991 589999999999999999999988889999999999999999998 9999
Q ss_pred HHhhCC-CccCceEEEEeccCCCCCCcceeecCCChHHHHHHHHHhcCCCCcccchhccccCCCCCCCchHHHhh--cCC
Q 004095 91 FVTQHP-WSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKE--VAG 167 (774)
Q Consensus 91 fv~~h~-~~~~i~a~INLD~~G~gg~~~lfq~g~~~~li~~~~~~a~~P~~~~~~~d~f~~g~ips~TD~~~F~~--~~G 167 (774)
++++.. ...+....+..|..+.+.-. ...++.+.+...++.+...+... .....+..||...+.+ ..+
T Consensus 81 l~~~~~~~~~~~~~~~~~e~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~g~tD~~~~~~~~~~~ 151 (189)
T PF01546_consen 81 LLEEGAFFGLHPDYVIIGEPTGKGGVG----SDNDPPLVQALQAAAQEVGGEPP-----EPVASGGGTDAGFLAEVKGLG 151 (189)
T ss_dssp HHHHCEEEEEEESEEEECECETTSEEE----HCTCHHHHHHHHHHHHHTTSSEE-----EEEEESSSSTHHHHHCHHHTT
T ss_pred hhhhccccccccccccccccccccccc----ccccHHHHHHHHHHHHHHhhccc-----cccceeccccchhhhhhhccc
Confidence 997641 12335566666655432210 22355566666555433333111 1113456899999995 478
Q ss_pred CeEEEEeeeCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHH
Q 004095 168 LSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLL 209 (774)
Q Consensus 168 IPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~ 209 (774)
+|.+-+.... ...|++. |+++.+.+....+.+..+++
T Consensus 152 ~~~i~~G~~~--~~~H~~~---E~i~~~~l~~~~~~~~~~l~ 188 (189)
T PF01546_consen 152 IPAIGFGPGG--SNAHTPD---EYIDIEDLVKGAKIYAALLE 188 (189)
T ss_dssp EEEEEEESCE--ESTTSTT----EEEHHHHHHHHHHHHHHHH
T ss_pred cceeeeCCCC--CCCCCCC---cEecHHHHHHHHHHHHHHHh
Confidence 8888765433 6889987 67778888888888877765
No 12
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=98.93 E-value=3.1e-09 Score=120.00 Aligned_cols=90 Identities=21% Similarity=0.160 Sum_probs=80.9
Q ss_pred CceEEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCCCCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCc
Q 004095 2 GRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 81 (774)
Q Consensus 2 g~~~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aE 81 (774)
|+...++...||+++++|+. .+.+.|++++|+||++. -|.-|+..||+..||++|.|++.+.+|+++|.+++|..|
T Consensus 47 Gl~v~~D~~gN~~~~~~g~~---~~~~~i~~gsHlDtv~~-gG~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~E 122 (406)
T TIGR03176 47 GLETRFDDVGNLYGRLVGTE---FPEETILTGSHIDTVVN-GGNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEE 122 (406)
T ss_pred CCEEEEcCCCcEEEEecCCC---CCCCeEEEeccccCCCC-CCccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccc
Confidence 77888999999999999972 34579999999999995 588899999999999999999988899999999999999
Q ss_pred CCC-----CcchHHHHhhC
Q 004095 82 EEG-----LNGAHSFVTQH 95 (774)
Q Consensus 82 E~g-----l~GS~~fv~~h 95 (774)
|.+ +.||+.+.-+.
T Consensus 123 Eg~rf~~~~~Gs~~~~g~~ 141 (406)
T TIGR03176 123 EGSRFPYVFWGSKNIFGLA 141 (406)
T ss_pred cCccCCcccccHHHHhCCC
Confidence 986 99999998533
No 13
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=98.87 E-value=1.6e-08 Score=106.61 Aligned_cols=170 Identities=18% Similarity=0.243 Sum_probs=131.0
Q ss_pred CCCeEEEeecccCcCCCCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCcchHHHHhhCCC-ccCceEE
Q 004095 26 AENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPW-STTIRVA 104 (774)
Q Consensus 26 ~~~~ILl~AHyDS~~~spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~GS~~fv~~h~~-~~~i~a~ 104 (774)
.++.||+++|..|.. -|+||-||+|++.-+|++|+.. +.+.+.+|+|-. +-.||-.|+.+|.. .++++.-
T Consensus 177 ~~~eiLlst~lCHPS---maNdn~SG~all~~lak~l~~~--ktrysYRfvf~P----~TiGsi~wLsrnee~lkhvk~G 247 (435)
T COG4310 177 SKDEILLSTYLCHPS---MANDNLSGLALLTFLAKALKSL--KTRYSYRFVFAP----ETIGSIVWLSRNEECLKHVKHG 247 (435)
T ss_pred ccceeeeeecccChh---hccCccchHHHHHHHHHHHHhc--cceeeEEEEecc----cccchhhhHhcchhHHhhhhcc
Confidence 567899999999986 7999999999999999999875 578899999987 46899999998864 5899999
Q ss_pred EEeccCCCCCCcceeecCCChHHHHHHHHHh-cCCCCcccchhccccCCCCCCCchHHHhhcCCCeEEEEee-------e
Q 004095 105 IDLEAMGIGGKSGLFQAGPHPWAVENFAAAA-KYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAY-------T 176 (774)
Q Consensus 105 INLD~~G~gg~~~lfq~g~~~~li~~~~~~a-~~P~~~~~~~d~f~~g~ips~TD~~~F~~~~GIPgld~a~-------~ 176 (774)
+.+.+.|.+|.....++..+..+++..+... ++-.... ..+ .++|.++|-|+|.. ||+++.. +
T Consensus 248 lVlsClGD~g~~nykrtrrgna~iDki~~~tl~~~~s~~---~~~--dF~p~G~DERQf~s----Pg~NLpvg~~~Rs~y 318 (435)
T COG4310 248 LVLSCLGDGGGPNYKRTRRGNALIDKIALHTLKHCGSNF---KAA--DFLPYGSDERQFCS----PGFNLPVGGLQRSRY 318 (435)
T ss_pred eEEEEecCCCCccceeccccchHHHHHHHHHHhcCCcCc---eee--ecccCCCchhhccC----CCcCCchhhhhHhhc
Confidence 9999999887776777544555666654432 2222111 112 36788999999986 5555432 2
Q ss_pred CCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 004095 177 DKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAAS 213 (774)
Q Consensus 177 ~~~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~la~ 213 (774)
+..+-|||..|+++.++++.|...-+.++.++..+-+
T Consensus 319 G~f~~YHtSaDnL~fi~~e~L~~s~~~~memI~~lE~ 355 (435)
T COG4310 319 GDFDGYHTSADNLDFISPEGLAGSFQMMMEMILNLEI 355 (435)
T ss_pred CCCccccCccccccccCHHHHHHHHHHHHHHHHHHHh
Confidence 4456799999999999999888888888888877765
No 14
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=98.83 E-value=1.4e-08 Score=114.27 Aligned_cols=91 Identities=22% Similarity=0.233 Sum_probs=78.6
Q ss_pred CCceEEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCCCCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCC
Q 004095 1 MGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTG 80 (774)
Q Consensus 1 ~g~~~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~a 80 (774)
.|.....++..||+++++|+. .+.+.|++++|+|+++. -|.-|+..|++.+|+++|.|++.+.+++++|.|+++.+
T Consensus 44 ~G~~~~~~~~~nl~a~~~g~~---~~~~~l~~~~H~DtV~~-gg~~dg~~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~d 119 (401)
T TIGR01879 44 AGLEVRFDEVGNLIGRKEGTE---PPLEVVLSGSHIDTVVN-GGNFDGQLGVLAGIEVVDALKEAYVVPLHPIEVVAFTE 119 (401)
T ss_pred CCCEEEEecCCcEEEEecCCC---CCCCEEEEecccccCCC-CCccCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeC
Confidence 366667777889999998852 23478999999999985 47889999999999999999998888999999999999
Q ss_pred cCC-----CCcchHHHHhhC
Q 004095 81 EEE-----GLNGAHSFVTQH 95 (774)
Q Consensus 81 EE~-----gl~GS~~fv~~h 95 (774)
||. ++.||+.++.+.
T Consensus 120 EE~~~f~~~~~Gs~~~~~~~ 139 (401)
T TIGR01879 120 EEGSRFPYGMWGSRNMVGLA 139 (401)
T ss_pred CcCcCcccccccHHHHhccc
Confidence 997 789999998654
No 15
>PRK09133 hypothetical protein; Provisional
Probab=98.78 E-value=2.3e-08 Score=114.96 Aligned_cols=96 Identities=21% Similarity=0.282 Sum_probs=80.8
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecccCcCC--------------------CCCCCCChhHHHHHHHHHHHHHHcCCC
Q 004095 9 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHG 68 (774)
Q Consensus 9 ~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~--------------------spGA~DngsGvAvmLElaR~L~~~~~~ 68 (774)
+..||+++++|+ .+++.|++++|+|+++. ++|+.|+..|+|++|++++.|++.+..
T Consensus 87 ~~~nli~~~~g~----~~~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~ 162 (472)
T PRK09133 87 RKGNLVARLRGT----DPKKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFK 162 (472)
T ss_pred CceeEEEEecCC----CCCCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCC
Confidence 457999999875 23467999999999873 479999999999999999999987778
Q ss_pred CCccEEEEEeCCcC-CCCcchHHHHhhCCCccCceEEEEecc
Q 004095 69 FKNAVIFLFNTGEE-EGLNGAHSFVTQHPWSTTIRVAIDLEA 109 (774)
Q Consensus 69 p~~~IiFlf~~aEE-~gl~GS~~fv~~h~~~~~i~a~INLD~ 109 (774)
++++|.|++..+|| .|..|++.++++++..-+..++|+ |.
T Consensus 163 ~~~~i~~~~~~dEE~~g~~G~~~l~~~~~~~~~~~~~i~-e~ 203 (472)
T PRK09133 163 PKRDIILALTGDEEGTPMNGVAWLAENHRDLIDAEFALN-EG 203 (472)
T ss_pred CCCCEEEEEECccccCccchHHHHHHHHhhccCeEEEEE-CC
Confidence 89999999999999 899999999987653334467788 64
No 16
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=98.75 E-value=3.4e-08 Score=111.56 Aligned_cols=90 Identities=19% Similarity=0.172 Sum_probs=76.3
Q ss_pred CCceEEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCCCCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCC
Q 004095 1 MGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTG 80 (774)
Q Consensus 1 ~g~~~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~a 80 (774)
+|.........|++++++|+. .+.+.|++++|+|+++. .|+.|+.+|+|++|++++.|++.+.+++++|.|+++.+
T Consensus 51 ~G~~~~~~~~~nlia~~~g~~---~~~~~l~~~~H~DtVp~-~g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~d 126 (414)
T PRK12890 51 AGLEVRRDAAGNLFGRLPGRD---PDLPPLMTGSHLDTVPN-GGRYDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTN 126 (414)
T ss_pred CCCEEEEcCCCcEEEEeCCCC---CCCCEEEEeCcccCCCC-CCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEec
Confidence 366666667789999998751 23568999999999985 47889999999999999999988778899999999999
Q ss_pred cCC-----CCcchHHHHhh
Q 004095 81 EEE-----GLNGAHSFVTQ 94 (774)
Q Consensus 81 EE~-----gl~GS~~fv~~ 94 (774)
||. ++.||+.+...
T Consensus 127 EE~~~~~~~~~G~~~~~~~ 145 (414)
T PRK12890 127 EEGVRFGPSMIGSRALAGT 145 (414)
T ss_pred ccccccCCccccHHHHHcc
Confidence 997 67899888743
No 17
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=98.73 E-value=4.5e-08 Score=108.94 Aligned_cols=95 Identities=19% Similarity=0.250 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCCCCCCCeEEEeecccCcCCC---------------------CCCCCChhHHHHHHHHHHHHHHcCCCCC
Q 004095 12 HIVLRIQPKYASEAAENAILVSSHIDTVFAA---------------------EGAGDCSSCVAVMLELARAMSQWAHGFK 70 (774)
Q Consensus 12 NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~s---------------------pGA~DngsGvAvmLElaR~L~~~~~~p~ 70 (774)
|+++.+.|+ .+.+.|++.+|+|+++.. +|+.|+.+|+|++|++++.+.+.+.+++
T Consensus 53 ~~~~~~~g~----~~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~ 128 (375)
T TIGR01910 53 KVVVKEPGN----GNEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPN 128 (375)
T ss_pred ceEEeccCC----CCCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCC
Confidence 577777764 235689999999999853 5899999999999999999998776788
Q ss_pred ccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccCC
Q 004095 71 NAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 111 (774)
Q Consensus 71 ~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~G 111 (774)
++|.|+|+.+||.|..|++.++++ ...++...+|..|..|
T Consensus 129 ~~i~~~~~~~EE~g~~G~~~~~~~-~~~~~~d~~i~~~~~~ 168 (375)
T TIGR01910 129 GNIILQSVVDEESGEAGTLYLLQR-GYFKDADGVLIPEPSG 168 (375)
T ss_pred ccEEEEEEcCcccCchhHHHHHHc-CCCCCCCEEEECCCCC
Confidence 999999999999999999999965 2333456667777543
No 18
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=98.73 E-value=3.9e-08 Score=111.28 Aligned_cols=88 Identities=22% Similarity=0.215 Sum_probs=75.6
Q ss_pred CCceEEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCCCCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCC
Q 004095 1 MGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTG 80 (774)
Q Consensus 1 ~g~~~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~a 80 (774)
+|+...+....|++++++|+. ...+.|++++|+|+++. .|.-|+.+|++++|+++|.|++.+.+++++|.++++.+
T Consensus 53 ~G~~v~~~~~gNl~a~~~g~~---~~~~~l~~~~H~DtVp~-gg~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~d 128 (414)
T PRK12891 53 AGCTVRVDAMGNLFARRAGRD---PDAAPVMTGSHADSQPT-GGRYDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTN 128 (414)
T ss_pred CCCEEEECCCCCEEEEecCCC---CCCCeEEEEecccCCCC-CccccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEecc
Confidence 467777778889999998851 23478999999999985 36789999999999999999998888999999999999
Q ss_pred cCCC-----CcchHHHH
Q 004095 81 EEEG-----LNGAHSFV 92 (774)
Q Consensus 81 EE~g-----l~GS~~fv 92 (774)
||.+ +.||+.+.
T Consensus 129 EE~~~f~~~~~Gs~~~~ 145 (414)
T PRK12891 129 EEGSRFAPSMVGSGVFF 145 (414)
T ss_pred cccCcCCcccccHHHHh
Confidence 9985 67998774
No 19
>PRK08596 acetylornithine deacetylase; Validated
Probab=98.71 E-value=8.1e-08 Score=108.87 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=80.0
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecccCcCC---------------------CCCCCCChhHHHHHHHHHHHHHHcCC
Q 004095 9 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAH 67 (774)
Q Consensus 9 ~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~---------------------spGA~DngsGvAvmLElaR~L~~~~~ 67 (774)
+..||+++++|+. ....+.|++++|+|+++. ++|+.|+..|+|++|++++.+++.+.
T Consensus 61 ~~~nvia~~~g~~--~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~ 138 (421)
T PRK08596 61 NDPNVVGVKKGTE--SDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGI 138 (421)
T ss_pred CCceEEEEecCCC--CCCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCC
Confidence 4589999998752 122357999999999753 38999999999999999999998877
Q ss_pred CCCccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccC
Q 004095 68 GFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 110 (774)
Q Consensus 68 ~p~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~ 110 (774)
+++.+|.|+|..+||.|..|++.++++.. ....+|+.|..
T Consensus 139 ~~~~~v~~~~~~dEE~g~~G~~~~~~~~~---~~d~~i~~ep~ 178 (421)
T PRK08596 139 ELPGDLIFQSVIGEEVGEAGTLQCCERGY---DADFAVVVDTS 178 (421)
T ss_pred CCCCcEEEEEEeccccCCcCHHHHHhcCC---CCCEEEECCCC
Confidence 78899999999999999999999996643 34567777754
No 20
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=98.71 E-value=4.3e-08 Score=115.86 Aligned_cols=89 Identities=18% Similarity=0.179 Sum_probs=77.5
Q ss_pred CCc-eEEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCCCCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeC
Q 004095 1 MGR-TLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNT 79 (774)
Q Consensus 1 ~g~-~~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~ 79 (774)
+|+ ....+...||+++++|+. ...+.|++++|+||++. -|.-|+..||+++||++|.|++.+.+++++|.+++|.
T Consensus 227 ~Gl~~v~~D~~GNl~~~~~g~~---~~~~~v~~gsHlDTV~~-gG~~DG~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~ 302 (591)
T PRK13590 227 CGFDEVHIDAVGNVVGRYKGST---PQAKRLLTGSHYDTVRN-GGKYDGRLGIFVPMACVRELHRQGRRLPFGLEVVGFA 302 (591)
T ss_pred cCCCeeeECCCCCEEEEecCCC---CCCCeEEEecccccCCC-CCCcccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEec
Confidence 467 777888999999999862 23478999999999985 4778999999999999999999888888999999999
Q ss_pred CcCC-----CCcchHHHHh
Q 004095 80 GEEE-----GLNGAHSFVT 93 (774)
Q Consensus 80 aEE~-----gl~GS~~fv~ 93 (774)
+||. ++.||+.+.-
T Consensus 303 ~EEg~rF~~~~~GS~~~~G 321 (591)
T PRK13590 303 EEEGQRYKATFLGSGALIG 321 (591)
T ss_pred CCccccCCccccchHHHhC
Confidence 9997 5999998763
No 21
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=98.70 E-value=1.3e-07 Score=106.89 Aligned_cols=95 Identities=23% Similarity=0.345 Sum_probs=79.2
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecccCcCC-----------------CCCCCCChhHHHHHHHHHHHHHHcCCCCCcc
Q 004095 10 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA-----------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 72 (774)
Q Consensus 10 ~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~-----------------spGA~DngsGvAvmLElaR~L~~~~~~p~~~ 72 (774)
..|++++++|+ +.+.|++.+|+|+++. ++|+.|+.+|++++|++++.+++.+.+++.+
T Consensus 87 ~~~lia~~~g~-----~~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~ 161 (410)
T PRK06133 87 GDMVVATFKGT-----GKRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGT 161 (410)
T ss_pred CCeEEEEECCC-----CCceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCC
Confidence 46999999764 2357999999999973 4799999999999999999999876677789
Q ss_pred EEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccCC
Q 004095 73 VIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 111 (774)
Q Consensus 73 IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~G 111 (774)
|+|+|..+||.|..|++.++++.. .+...+|+.|...
T Consensus 162 i~~~~~~dEE~g~~G~~~~~~~~~--~~~d~~i~~ep~~ 198 (410)
T PRK06133 162 LTVLFNPDEETGSPGSRELIAELA--AQHDVVFSCEPGR 198 (410)
T ss_pred EEEEEECCcccCCccHHHHHHHHh--ccCCEEEEeCCCC
Confidence 999999999999999999997643 2456778887543
No 22
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=98.68 E-value=5.3e-08 Score=115.04 Aligned_cols=89 Identities=15% Similarity=0.183 Sum_probs=79.8
Q ss_pred CCce-EEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCCCCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeC
Q 004095 1 MGRT-LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNT 79 (774)
Q Consensus 1 ~g~~-~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~ 79 (774)
.|+. ...+...||+++++|++ ...+.|++++|+|||+. -|.-|...||+.+||++|.|++.+.+++++|.++.|.
T Consensus 227 ~Gl~~v~~D~~gNv~~~~~g~~---~~~p~v~~gSHlDTV~~-gG~~DG~~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~ 302 (591)
T PRK13799 227 AGFDEVEIDAVGNVVGRYKAAD---DDAKTLITGSHYDTVRN-GGKYDGREGIFLAIACVKELHEQGERLPFHFEVIAFA 302 (591)
T ss_pred cCCCeEeECCCCCEEEEcCCCC---CCCCeEEEeccccccCC-CCccccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEec
Confidence 4777 78889999999999862 34578999999999984 7888999999999999999999999999999999999
Q ss_pred CcCC-----CCcchHHHHh
Q 004095 80 GEEE-----GLNGAHSFVT 93 (774)
Q Consensus 80 aEE~-----gl~GS~~fv~ 93 (774)
+||. ++.||+.+.-
T Consensus 303 ~EEg~rF~~~~~GS~~~~G 321 (591)
T PRK13799 303 EEEGQRFKATFLGSGALIG 321 (591)
T ss_pred CCCccCCCccccchHHHhC
Confidence 9997 8999999973
No 23
>PRK07473 carboxypeptidase; Provisional
Probab=98.66 E-value=1.9e-07 Score=104.49 Aligned_cols=96 Identities=20% Similarity=0.238 Sum_probs=78.1
Q ss_pred ceEEEEEcCCCCCCCCCCeEEEeecccCcCC-----------------CCCCCCChhHHHHHHHHHHHHHHcCCCCCccE
Q 004095 11 NHIVLRIQPKYASEAAENAILVSSHIDTVFA-----------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAV 73 (774)
Q Consensus 11 ~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~-----------------spGA~DngsGvAvmLElaR~L~~~~~~p~~~I 73 (774)
.|+++++++. ...++.|++++|+|+++. ++|+.|+.+|+|+||.+++.+++.+.+++.+|
T Consensus 62 ~~~~~~~~~~---~~~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v 138 (376)
T PRK07473 62 DCVRARFPHP---RQGEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPI 138 (376)
T ss_pred CeEEEEeCCC---CCCCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCE
Confidence 4899999753 123567999999999842 48999999999999999999988765666789
Q ss_pred EEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccCC
Q 004095 74 IFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 111 (774)
Q Consensus 74 iFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~G 111 (774)
.|++..+||.|..|++.+++++.. +..++|..|..+
T Consensus 139 ~~~~~~dEE~g~~g~~~~~~~~~~--~~d~~iv~ep~~ 174 (376)
T PRK07473 139 TVLFTPDEEVGTPSTRDLIEAEAA--RNKYVLVPEPGR 174 (376)
T ss_pred EEEEeCCcccCCccHHHHHHHhhc--cCCEEEEeCCCC
Confidence 999999999999999999976532 346778878654
No 24
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.62 E-value=2.2e-07 Score=103.40 Aligned_cols=93 Identities=23% Similarity=0.299 Sum_probs=76.6
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecccCcCC---------------------CCCCCCChhHHHHHHHHHHHHHHcCCC
Q 004095 10 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHG 68 (774)
Q Consensus 10 ~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~---------------------spGA~DngsGvAvmLElaR~L~~~~~~ 68 (774)
..|+++++ |. . ++.|++.+|+|+++. ++|+.|+..|+|++|++++.|.+.+..
T Consensus 48 ~~~l~a~~-g~----~-~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~ 121 (377)
T PRK08588 48 RANLVAEI-GS----G-SPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQL 121 (377)
T ss_pred CceEEEEe-CC----C-CceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCC
Confidence 46999998 42 1 268999999999974 368999999999999999999987777
Q ss_pred CCccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEecc
Q 004095 69 FKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEA 109 (774)
Q Consensus 69 p~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~ 109 (774)
++.+|.|+|..+||.|..|++.++++ .+.++...++..|.
T Consensus 122 ~~~~i~l~~~~dEE~g~~G~~~~~~~-~~~~~~d~~i~~ep 161 (377)
T PRK08588 122 LNGTIRLLATAGEEVGELGAKQLTEK-GYADDLDALIIGEP 161 (377)
T ss_pred CCCcEEEEEEcccccCchhHHHHHhc-CccCCCCEEEEecC
Confidence 88999999999999999999999965 33445556666664
No 25
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.61 E-value=1.8e-07 Score=105.87 Aligned_cols=98 Identities=20% Similarity=0.196 Sum_probs=75.9
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecccCcCC-------------------CCCCCCChhHHHHHHHHHHHHHHcCCCCC
Q 004095 10 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQWAHGFK 70 (774)
Q Consensus 10 ~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~-------------------spGA~DngsGvAvmLElaR~L~~~~~~p~ 70 (774)
..|++++++|+ .+++.|++.+|+|+++. ++|+.|+..|+|++|.+++.|++.+.+++
T Consensus 71 ~~nlia~~~g~----~~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~ 146 (427)
T PRK13013 71 RWNLVARRQGA----RDGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFA 146 (427)
T ss_pred cceEEEEecCC----CCCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCC
Confidence 46999999775 24578999999999873 36999999999999999999998777778
Q ss_pred ccEEEEEeCCcCCCCcchHHHHhhCCCcc--CceEEEEeccCC
Q 004095 71 NAVIFLFNTGEEEGLNGAHSFVTQHPWST--TIRVAIDLEAMG 111 (774)
Q Consensus 71 ~~IiFlf~~aEE~gl~GS~~fv~~h~~~~--~i~a~INLD~~G 111 (774)
.+|+|+|..+||.|..|...++.+....+ ++.++|..|..+
T Consensus 147 ~~v~~~~~~dEE~g~~~g~~~l~~~~~~~~~~~d~~i~~ep~~ 189 (427)
T PRK13013 147 GSIEISGTADEESGGFGGVAYLAEQGRFSPDRVQHVIIPEPLN 189 (427)
T ss_pred ccEEEEEEeccccCChhHHHHHHhcCCccccCCCEEEEecCCC
Confidence 89999999999988664444443443322 456677766443
No 26
>PRK07906 hypothetical protein; Provisional
Probab=98.61 E-value=1.6e-07 Score=106.50 Aligned_cols=85 Identities=32% Similarity=0.461 Sum_probs=72.5
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecccCcCC--------------------CCCCCCChhHHHHHHHHHHHHHHcCCC
Q 004095 9 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHG 68 (774)
Q Consensus 9 ~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~--------------------spGA~DngsGvAvmLElaR~L~~~~~~ 68 (774)
+..|++++++|++ ...+.|++++|+|+++. ++|+.|+..|++++|++++.+++.+..
T Consensus 50 ~~~nv~~~~~g~~---~~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~ 126 (426)
T PRK07906 50 GRANVVARLPGAD---PSRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRR 126 (426)
T ss_pred CceEEEEEEeCCC---CCCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCC
Confidence 3579999998752 23467999999999974 379999999999999999999988778
Q ss_pred CCccEEEEEeCCcCCC-CcchHHHHhhCC
Q 004095 69 FKNAVIFLFNTGEEEG-LNGAHSFVTQHP 96 (774)
Q Consensus 69 p~~~IiFlf~~aEE~g-l~GS~~fv~~h~ 96 (774)
++++|.|+|+..||.| ..|++.++++++
T Consensus 127 ~~~~i~~~~~~dEE~g~~~g~~~l~~~~~ 155 (426)
T PRK07906 127 PPRDLVFAFVADEEAGGTYGAHWLVDNHP 155 (426)
T ss_pred CCccEEEEEecCcccchhhhHHHHHHHHH
Confidence 8999999999999996 569999987653
No 27
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=98.61 E-value=2.8e-07 Score=103.06 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=76.7
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecccCcCC---------------------CCCCCCChhHHHHHHHHHHHHHHcCCC
Q 004095 10 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHG 68 (774)
Q Consensus 10 ~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~---------------------spGA~DngsGvAvmLElaR~L~~~~~~ 68 (774)
..|++++++|. .+++.|++++|+|+++. +.|+.|+..|++++|++++.+.+.+.+
T Consensus 63 ~~nl~~~~~g~----~~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~ 138 (400)
T PRK13983 63 RPNIVAKIPGG----DGKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIR 138 (400)
T ss_pred CccEEEEecCC----CCCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCC
Confidence 58999999875 23458999999999984 378999999999999999999987777
Q ss_pred CCccEEEEEeCCcCCCCc-chHHHHhhCCC-ccCceEEEEec
Q 004095 69 FKNAVIFLFNTGEEEGLN-GAHSFVTQHPW-STTIRVAIDLE 108 (774)
Q Consensus 69 p~~~IiFlf~~aEE~gl~-GS~~fv~~h~~-~~~i~a~INLD 108 (774)
++.+|.|+|..+||.|.. |++.++++++. .....+++..|
T Consensus 139 ~~~~v~~~~~~dEE~g~~~g~~~~~~~~~~~~~~~d~~i~~~ 180 (400)
T PRK13983 139 PKYNLGLAFVSDEETGSKYGIQYLLKKHPELFKKDDLILVPD 180 (400)
T ss_pred CCCcEEEEEEeccccCCcccHHHHHhhcccccCCCCEEEEec
Confidence 889999999999998874 89999876532 23344455444
No 28
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=98.60 E-value=1.9e-07 Score=105.31 Aligned_cols=90 Identities=22% Similarity=0.285 Sum_probs=75.6
Q ss_pred CCceEEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCCCCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCC
Q 004095 1 MGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTG 80 (774)
Q Consensus 1 ~g~~~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~a 80 (774)
+|+.....+..|++++++|+ .+.+.|++++|+|+++. .|-.|+..|+|++|++++.|++.+.+++++|.|+++.+
T Consensus 52 ~G~~~~~~~~~nl~a~~~g~----~~~~~l~l~gH~DtVp~-~g~~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~d 126 (412)
T PRK12892 52 AGLAVRIDGIGNVFGRLPGP----GPGPALLVGSHLDSQNL-GGRYDGALGVVAGLEAARALNEHGIATRHPLDVVAWCD 126 (412)
T ss_pred cCCEEEEcCCCcEEEEecCC----CCCCeEEEEccccCCCC-CCcccchHHHHHHHHHHHHHHHcCCCCCCCeEEEEecC
Confidence 35555666778999999885 23467999999999985 35678889999999999999998888999999999999
Q ss_pred cCC-----CCcchHHHHhhC
Q 004095 81 EEE-----GLNGAHSFVTQH 95 (774)
Q Consensus 81 EE~-----gl~GS~~fv~~h 95 (774)
||. ++.||+.++.++
T Consensus 127 EE~~~~~~~~~Gs~~~~~~~ 146 (412)
T PRK12892 127 EEGSRFTPGFLGSRAYAGRL 146 (412)
T ss_pred cccccccCccccHHHHHcCC
Confidence 998 578999998544
No 29
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=98.59 E-value=2.1e-07 Score=105.05 Aligned_cols=92 Identities=22% Similarity=0.245 Sum_probs=76.5
Q ss_pred CCceEEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCCCCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCC
Q 004095 1 MGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTG 80 (774)
Q Consensus 1 ~g~~~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~a 80 (774)
+|......+..|++++++|+. .+++.|++++|+|+++. .|.-|+..|+|++|++++.|++.+.+++++|+|+|+.+
T Consensus 53 ~G~~~~~~~~~n~~a~~~g~~---~~~~~l~l~~H~DtVp~-~g~~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~d 128 (412)
T PRK12893 53 AGLTVSVDAIGNLFGRRAGTD---PDAPPVLIGSHLDTQPT-GGRFDGALGVLAALEVVRTLNDAGIRTRRPIEVVSWTN 128 (412)
T ss_pred cCCEEEEcCCCcEEEEeCCCC---CCCCEEEEEecccCCCC-CCcccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEEcc
Confidence 356666666789999998751 23578999999999984 56779999999999999999988777899999999999
Q ss_pred cCCC-----CcchHHHHhhCC
Q 004095 81 EEEG-----LNGAHSFVTQHP 96 (774)
Q Consensus 81 EE~g-----l~GS~~fv~~h~ 96 (774)
||.| +.|+..+..+++
T Consensus 129 EE~g~~~~~~~G~~~~~~~~~ 149 (412)
T PRK12893 129 EEGARFAPAMLGSGVFTGALP 149 (412)
T ss_pred ccccccccccccHHHHhCcCC
Confidence 9986 889998885543
No 30
>PRK07338 hypothetical protein; Provisional
Probab=98.58 E-value=2.3e-07 Score=104.32 Aligned_cols=93 Identities=24% Similarity=0.334 Sum_probs=76.3
Q ss_pred ceEEEEEcCCCCCCCCCCeEEEeecccCcCC-----------------CCCCCCChhHHHHHHHHHHHHHHcCCCCCccE
Q 004095 11 NHIVLRIQPKYASEAAENAILVSSHIDTVFA-----------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAV 73 (774)
Q Consensus 11 ~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~-----------------spGA~DngsGvAvmLElaR~L~~~~~~p~~~I 73 (774)
.|++++++|. .++.|++++|+|+++. ++|+.|+.+|+|++|++++.|++.+..++.+|
T Consensus 81 ~nl~a~~~~~-----~~~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i 155 (402)
T PRK07338 81 PALHVSVRPE-----APRQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGY 155 (402)
T ss_pred CeEEEEECCC-----CCccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCE
Confidence 6999999653 2235999999999863 36899999999999999999988766677899
Q ss_pred EEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccC
Q 004095 74 IFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 110 (774)
Q Consensus 74 iFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~ 110 (774)
.|+|..+||.|..|++.+++++.. +..+.+.+|..
T Consensus 156 ~~~~~~dEE~g~~g~~~~~~~~~~--~~~~~i~~ep~ 190 (402)
T PRK07338 156 DVLINPDEEIGSPASAPLLAELAR--GKHAALTYEPA 190 (402)
T ss_pred EEEEECCcccCChhhHHHHHHHhc--cCcEEEEecCC
Confidence 999999999999999999977642 34566777754
No 31
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=98.57 E-value=2.5e-07 Score=104.54 Aligned_cols=90 Identities=23% Similarity=0.258 Sum_probs=74.8
Q ss_pred CceEEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCCCCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCc
Q 004095 2 GRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 81 (774)
Q Consensus 2 g~~~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aE 81 (774)
|+....++..|++++++|.. .+++.|++++|+|+++. .|..|+..|+|+|+++++.|++.+.+++++|.|+++.+|
T Consensus 51 g~~~~~~~~~nl~a~~~g~~---~~~~~l~l~gH~DtVp~-~g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dE 126 (413)
T PRK09290 51 GLTVRVDAVGNLFGRLEGRD---PDAPAVLTGSHLDTVPN-GGRFDGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNE 126 (413)
T ss_pred CCEEEEcCCCcEEEEecCCC---CCCCEEEEecCccCCCC-CCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCC
Confidence 55555566789999997641 23468999999999985 467799999999999999999887778899999999999
Q ss_pred CC-----CCcchHHHHhhC
Q 004095 82 EE-----GLNGAHSFVTQH 95 (774)
Q Consensus 82 E~-----gl~GS~~fv~~h 95 (774)
|. |+.|++.+++++
T Consensus 127 E~g~~g~~~~G~~~~~~~~ 145 (413)
T PRK09290 127 EGSRFGPAMLGSRVFTGAL 145 (413)
T ss_pred ccccccCccccHHHHHccc
Confidence 98 578999988654
No 32
>PRK09104 hypothetical protein; Validated
Probab=98.56 E-value=4e-07 Score=104.51 Aligned_cols=98 Identities=20% Similarity=0.208 Sum_probs=78.8
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecccCcCC--------------------------CCCCCCChhHHHHHHHHHHHH
Q 004095 9 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------------AEGAGDCSSCVAVMLELARAM 62 (774)
Q Consensus 9 ~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~--------------------------spGA~DngsGvAvmLElaR~L 62 (774)
+..||++++.|+. ...+.|++++|+|+++. ++|+.|+..|+|++|++++.|
T Consensus 67 ~~~~l~a~~~g~~---~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l 143 (464)
T PRK09104 67 GHPMVVAHHEGPT---GDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAW 143 (464)
T ss_pred CCCEEEEEecCCC---CCCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHH
Confidence 3569999998741 23578999999999652 358899999999999999999
Q ss_pred HHcCCCCCccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEecc
Q 004095 63 SQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEA 109 (774)
Q Consensus 63 ~~~~~~p~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~ 109 (774)
++.+..++.+|.|++.+.||.|..|...++.+.....+..++|..|.
T Consensus 144 ~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~ 190 (464)
T PRK09104 144 KAVTGSLPVRVTILFEGEEESGSPSLVPFLEANAEELKADVALVCDT 190 (464)
T ss_pred HHhcCCCCCcEEEEEECccccCCccHHHHHHhhHHhcCCCEEEEeCC
Confidence 98655667789999999999999999999965432224577888884
No 33
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=98.55 E-value=2.5e-07 Score=102.38 Aligned_cols=80 Identities=29% Similarity=0.374 Sum_probs=68.8
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecccCcCC--------------CCCC----CCChhHHHHHHHHHHHHHHcCCCCCc
Q 004095 10 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------AEGA----GDCSSCVAVMLELARAMSQWAHGFKN 71 (774)
Q Consensus 10 ~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~--------------spGA----~DngsGvAvmLElaR~L~~~~~~p~~ 71 (774)
..|++++++|+ .+++.|++++|+|+++. +.|+ .|+.+|+|++|++++.|++.+ .+++
T Consensus 49 ~~~~~~~~~g~----~~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~ 123 (361)
T TIGR01883 49 DNNLIARLPGT----VKFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHG 123 (361)
T ss_pred CceEEEEEeCC----CCCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCC
Confidence 68999999875 23468999999999984 3666 799999999999999998864 5678
Q ss_pred cEEEEEeCCcCCCCcchHHHHhh
Q 004095 72 AVIFLFNTGEEEGLNGAHSFVTQ 94 (774)
Q Consensus 72 ~IiFlf~~aEE~gl~GS~~fv~~ 94 (774)
+|+|+|+.+||.|..|++.+.++
T Consensus 124 ~v~~~~~~~EE~g~~G~~~~~~~ 146 (361)
T TIGR01883 124 TIEFIFTVKEELGLIGMRLFDES 146 (361)
T ss_pred CEEEEEEcccccCchhHhHhChh
Confidence 99999999999999999998754
No 34
>PRK07907 hypothetical protein; Provisional
Probab=98.54 E-value=3.1e-07 Score=104.98 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=77.3
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecccCcCC---------------------CCCCCCChhHHHHHHHHHHHHHHcCC
Q 004095 9 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAH 67 (774)
Q Consensus 9 ~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~---------------------spGA~DngsGvAvmLElaR~L~~~~~ 67 (774)
+..||+++++++ .+.+.|++++|+|+++. ++|+.|+..|+|++|++++.+ . .
T Consensus 69 ~~~nl~a~~~~~----~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l-~--~ 141 (449)
T PRK07907 69 GAPAVIGTRPAP----PGAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL-G--G 141 (449)
T ss_pred CCCEEEEEecCC----CCCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh-c--c
Confidence 567999999764 23568999999999874 269999999999999999999 3 3
Q ss_pred CCCccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccCC
Q 004095 68 GFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 111 (774)
Q Consensus 68 ~p~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~G 111 (774)
+++++|.|++.+.||.|..|++.++++++...+..++|..|..+
T Consensus 142 ~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~~~ 185 (449)
T PRK07907 142 DLPVGVTVFVEGEEEMGSPSLERLLAEHPDLLAADVIVIADSGN 185 (449)
T ss_pred CCCCcEEEEEEcCcccCCccHHHHHHhchHhhcCCEEEEecCCc
Confidence 56789999999999999999999998764333345667666543
No 35
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=98.50 E-value=3.3e-06 Score=93.18 Aligned_cols=150 Identities=21% Similarity=0.229 Sum_probs=105.1
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccCCCCCC---------
Q 004095 45 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGIGGK--------- 115 (774)
Q Consensus 45 A~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~G~gg~--------- 115 (774)
|-||-.||++|||++|.| + +..++.++.|+++.-||.|+.||+....+- +-..+|.+|..+++..
T Consensus 178 alDdR~gva~lle~lk~l-~-~~~~~~~vy~v~tvqEEVGlrGA~~~a~~i----~pd~aiavd~~~~~d~~~~~~~~~~ 251 (355)
T COG1363 178 ALDDRAGVAALLELLKEL-K-GIELPADVYFVASVQEEVGLRGAKTSAFRI----KPDIAIAVDVTPAGDTPGVPKGDVK 251 (355)
T ss_pred eccchHhHHHHHHHHHHh-c-cCCCCceEEEEEecchhhccchhhcccccc----CCCEEEEEecccccCCCCCcccccc
Confidence 789999999999999999 4 567899999999999999999999877432 2345677777766433
Q ss_pred -----cceee-c-CC-ChHHHHHHHHHh---cCCCCcccchhccccCCCC-CCCchHHHhhc-CCCeEEEEeeeCCCCCC
Q 004095 116 -----SGLFQ-A-GP-HPWAVENFAAAA---KYPSGQVTAQDLFASGAIT-SATDFQVYKEV-AGLSGLDFAYTDKSAVY 182 (774)
Q Consensus 116 -----~~lfq-~-g~-~~~li~~~~~~a---~~P~~~~~~~d~f~~g~ip-s~TD~~~F~~~-~GIPgld~a~~~~~~~Y 182 (774)
.+... . ++ ++.+.+...+.| .-|+-. + ..| .+||-..+... .|+|...++. +-.+-
T Consensus 252 lg~Gp~i~~~D~~~~~~~~l~~~L~~~A~~~~Ip~Q~----~-----v~~~ggTDA~a~~~~g~gvpta~Igi--p~ry~ 320 (355)
T COG1363 252 LGKGPVIRVKDASGIYHPKLRKFLLELAEKNNIPYQV----D-----VSPGGGTDAGAAHLTGGGVPTALIGI--PTRYI 320 (355)
T ss_pred cCCCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCeEE----E-----ecCCCCccHHHHHHcCCCCceEEEec--ccccc
Confidence 12122 2 22 455555544433 334321 2 223 47898877652 5799988765 23456
Q ss_pred CCcCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q 004095 183 HTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 214 (774)
Q Consensus 183 HT~~Dt~d~id~~slq~~g~~vl~~v~~la~~ 214 (774)
|++. +.++.+.+.++.+.+.+++..+...
T Consensus 321 Hs~~---e~~~~~D~~~~~~Ll~~~i~~~~~~ 349 (355)
T COG1363 321 HSPV---EVAHLDDLEATVKLLVAYLESLDRE 349 (355)
T ss_pred cCcc---eeecHHHHHHHHHHHHHHHHhcchh
Confidence 8866 7888899999999888888876653
No 36
>PRK13381 peptidase T; Provisional
Probab=98.49 E-value=5e-07 Score=101.83 Aligned_cols=89 Identities=20% Similarity=0.329 Sum_probs=71.9
Q ss_pred Cc-eEEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCCC--------------------------------------
Q 004095 2 GR-TLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAA-------------------------------------- 42 (774)
Q Consensus 2 g~-~~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~s-------------------------------------- 42 (774)
|. +....+..|||++++|+. ...+.|++++|+|+++..
T Consensus 45 G~~~~~~~~~~nvi~~~~g~~---~~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (404)
T PRK13381 45 GLEDIVIDEHAIVTAKLPGNT---PGAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNY 121 (404)
T ss_pred CCCcEEEcCCeEEEEEEecCC---CCCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhc
Confidence 54 334456679999998752 123789999999999643
Q ss_pred --------CCC----CCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCcchHHHHhh
Q 004095 43 --------EGA----GDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 94 (774)
Q Consensus 43 --------pGA----~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~GS~~fv~~ 94 (774)
.|+ .|+..|+|+||.+++.+.+.+ .++.+|.|+|..+||.|..|++.++.+
T Consensus 122 ~~~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~~-~~~g~i~~~~~~dEE~g~~G~~~~~~~ 184 (404)
T PRK13381 122 QGEDIIFSDGTSVLGADNKAAIAVVMTLLENLTENE-VEHGDIVVAFVPDEEIGLRGAKALDLA 184 (404)
T ss_pred cCCcEEeCCCccccccccHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccccccHHHHHHh
Confidence 367 899999999999999998763 457799999999999999999999754
No 37
>PRK07079 hypothetical protein; Provisional
Probab=98.48 E-value=6.9e-07 Score=102.76 Aligned_cols=96 Identities=20% Similarity=0.176 Sum_probs=76.8
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecccCcCC----------------------CCCCCCChhHHHHHHHHHHHHHHc-C
Q 004095 10 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA----------------------AEGAGDCSSCVAVMLELARAMSQW-A 66 (774)
Q Consensus 10 ~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~----------------------spGA~DngsGvAvmLElaR~L~~~-~ 66 (774)
..||++++.|. .+.+.|++++|+|+++. ++|+.|+.+|+|++|++++.+.+. +
T Consensus 72 ~~~vva~~~~~----~~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~ 147 (469)
T PRK07079 72 GPFLIAERIED----DALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAARG 147 (469)
T ss_pred CCEEEEEeCCC----CCCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHhcC
Confidence 46999998653 23468999999999862 379999999999999999998753 4
Q ss_pred CCCCccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEecc
Q 004095 67 HGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEA 109 (774)
Q Consensus 67 ~~p~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~ 109 (774)
.+++++|.|++...||.|..|++.++++++...+..++|..|.
T Consensus 148 ~~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~d~~iv~e~ 190 (469)
T PRK07079 148 GRLGFNVKLLIEMGEEIGSPGLAEVCRQHREALAADVLIASDG 190 (469)
T ss_pred CCCCCCEEEEEECccccCCccHHHHHHHhHHhcCCCEEEEeCC
Confidence 6788999999999999999999999988742222355666553
No 38
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=98.47 E-value=7.4e-07 Score=98.44 Aligned_cols=99 Identities=21% Similarity=0.186 Sum_probs=78.3
Q ss_pred CCceEEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCC------------CCCCCCChhHHHHHHHHHHHHHHcCCC
Q 004095 1 MGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA------------AEGAGDCSSCVAVMLELARAMSQWAHG 68 (774)
Q Consensus 1 ~g~~~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~------------spGA~DngsGvAvmLElaR~L~~~~~~ 68 (774)
+|+.....+..|+++++.+ .++.|++++|+|+++. ++|+.|+..|+|++|++++.+ + .+
T Consensus 39 ~G~~~~~~~~~n~i~~~~~------~~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~--~~ 109 (348)
T PRK04443 39 HGREAWVDEAGNARGPAGD------GPPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-E--AL 109 (348)
T ss_pred cCCEEEEcCCCcEEEEcCC------CCCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-c--cc
Confidence 3566666677899999833 2368999999999963 589999999999999999999 3 46
Q ss_pred CCccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccCC
Q 004095 69 FKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 111 (774)
Q Consensus 69 p~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~G 111 (774)
++++|.|++..+||.|..|...++.+. . ...++|..|..+
T Consensus 110 ~~~~i~~~~~~dEE~g~~~~~~~l~~~-~--~~d~~iv~Ept~ 149 (348)
T PRK04443 110 VRARVSFVGAVEEEAPSSGGARLVADR-E--RPDAVIIGEPSG 149 (348)
T ss_pred CCCCEEEEEEcccccCChhHHHHHHhc-c--CCCEEEEeCCCC
Confidence 788999999999999988777777543 1 356677777443
No 39
>PRK05469 peptidase T; Provisional
Probab=98.47 E-value=1.2e-06 Score=98.96 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=72.4
Q ss_pred CCce-EEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCCC-------------------------------------
Q 004095 1 MGRT-LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAA------------------------------------- 42 (774)
Q Consensus 1 ~g~~-~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~s------------------------------------- 42 (774)
+|.. ...++..||+++++|+. ..+.+.|++.+|+|+++..
T Consensus 45 ~G~~~~~~~~~~~v~~~~~g~~--~~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (408)
T PRK05469 45 LGLQDVTLDENGYVMATLPANV--DKDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKN 122 (408)
T ss_pred cCCCeEEECCCeEEEEEecCCC--CCCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHh
Confidence 3542 44556789999998751 1245889999999999542
Q ss_pred ---------CCC----CCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCcchHHHHhh
Q 004095 43 ---------EGA----GDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 94 (774)
Q Consensus 43 ---------pGA----~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~GS~~fv~~ 94 (774)
.|+ .|+.+|+|+||.+++.|++.+..++.+|+|+|..+||.| .|++.++.+
T Consensus 123 ~~g~~~~~~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~~~~g~v~~~f~~dEE~g-~Ga~~~~~~ 186 (408)
T PRK05469 123 YIGQTLITTDGTTLLGADDKAGIAEIMTALEYLIAHPEIKHGDIRVAFTPDEEIG-RGADKFDVE 186 (408)
T ss_pred ccCCCEEEcCCCEeecccchHHHHHHHHHHHHHHhCCCCCCCCEEEEEecccccC-CCHHHhhhh
Confidence 255 899999999999999998865567789999999999998 899988733
No 40
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=98.46 E-value=9.6e-07 Score=97.52 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=68.6
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecccCcCC--------------------CCCCCCChhHHHHHHHHHHHHHHcCCCC
Q 004095 10 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGF 69 (774)
Q Consensus 10 ~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~--------------------spGA~DngsGvAvmLElaR~L~~~~~~p 69 (774)
..||++++.|+ +.+.|++.+|+|+++. ++|+.|+.+|+|++|.+++.|++. +.
T Consensus 46 ~~nl~~~~~~~-----~~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~ 118 (364)
T TIGR01892 46 KSNLVAVIGPS-----GAGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE--QL 118 (364)
T ss_pred cccEEEEecCC-----CCCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc--Cc
Confidence 47999999553 2357999999999863 379999999999999999999874 45
Q ss_pred CccEEEEEeCCcCCCCcchHHHHhhCC
Q 004095 70 KNAVIFLFNTGEEEGLNGAHSFVTQHP 96 (774)
Q Consensus 70 ~~~IiFlf~~aEE~gl~GS~~fv~~h~ 96 (774)
+++|.|+|..+||.|..|++.++++..
T Consensus 119 ~~~v~~~~~~~EE~g~~G~~~~~~~~~ 145 (364)
T TIGR01892 119 KKPLHLALTADEEVGCTGAPKMIEAGA 145 (364)
T ss_pred CCCEEEEEEeccccCCcCHHHHHHhcC
Confidence 789999999999999999999997654
No 41
>PRK06446 hypothetical protein; Provisional
Probab=98.45 E-value=7.6e-07 Score=101.48 Aligned_cols=95 Identities=20% Similarity=0.211 Sum_probs=74.3
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecccCcCC---------------------CCCCCCChhHHHHHHHHHHHHHHcCC
Q 004095 9 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAH 67 (774)
Q Consensus 9 ~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~---------------------spGA~DngsGvAvmLElaR~L~~~~~ 67 (774)
+..|+++++.+. +.+.|++++|+|+++. +.||.|+.+|+|++|.+++.+.+.+
T Consensus 49 ~~~~lia~~~~~-----~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~- 122 (436)
T PRK06446 49 GHPVVYGEINVG-----AKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH- 122 (436)
T ss_pred CCCEEEEEecCC-----CCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-
Confidence 457899998532 3467999999999763 3799999999999999999987653
Q ss_pred CCCccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccC
Q 004095 68 GFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 110 (774)
Q Consensus 68 ~p~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~ 110 (774)
.++.+|.|++...||.|..|++.++++++..-+..++|. |..
T Consensus 123 ~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~vi~-E~~ 164 (436)
T PRK06446 123 KLNVNVKFLYEGEEEIGSPNLEDFIEKNKNKLKADSVIM-EGA 164 (436)
T ss_pred CCCCCEEEEEEcccccCCHhHHHHHHHHHHHhCCCEEEE-CCC
Confidence 567899999999999999999999987652212344453 433
No 42
>PRK08201 hypothetical protein; Provisional
Probab=98.43 E-value=7.5e-07 Score=102.04 Aligned_cols=98 Identities=19% Similarity=0.161 Sum_probs=77.3
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecccCcCC---------------------CCCCCCChhHHHHHHHHHHHHHHcCC
Q 004095 9 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAH 67 (774)
Q Consensus 9 ~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~---------------------spGA~DngsGvAvmLElaR~L~~~~~ 67 (774)
+..||++++.|. .+.+.|++++|+|+++. ++|+.|+..|+|++|++++.+.+.+.
T Consensus 65 ~~~~l~a~~~~~----~~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~ 140 (456)
T PRK08201 65 GHPIVYADWLHA----PGKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEG 140 (456)
T ss_pred CCCEEEEEecCC----CCCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcC
Confidence 346899988764 23467999999999763 37999999999999999999987555
Q ss_pred CCCccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccC
Q 004095 68 GFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 110 (774)
Q Consensus 68 ~p~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~ 110 (774)
.++++|.|++...||.|..|+..++++++..-+..++|..|..
T Consensus 141 ~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~ii~e~~ 183 (456)
T PRK08201 141 TLPVNVKFCIEGEEEIGSPNLDSFVEEEKDKLAADVVLISDTT 183 (456)
T ss_pred CCCCCEEEEEEcccccCCccHHHHHHhhHHhccCCEEEEeCCC
Confidence 6678999999999999999999999765321123566776654
No 43
>PRK06915 acetylornithine deacetylase; Validated
Probab=98.43 E-value=1e-06 Score=99.68 Aligned_cols=94 Identities=23% Similarity=0.273 Sum_probs=75.6
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecccCcCC---------------------CCCCCCChhHHHHHHHHHHHHHHcCC
Q 004095 9 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAH 67 (774)
Q Consensus 9 ~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~---------------------spGA~DngsGvAvmLElaR~L~~~~~ 67 (774)
+..||+++++|+ .+.+.|++++|+|+++. +.|+.|+..|++++|.+++.|++.+.
T Consensus 79 ~~~nlia~~~g~----~~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~ 154 (422)
T PRK06915 79 DSPNIVATLKGS----GGGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGI 154 (422)
T ss_pred CCceEEEEEcCC----CCCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCC
Confidence 458999999875 24468999999999974 37999999999999999999998777
Q ss_pred CCCccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEecc
Q 004095 68 GFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEA 109 (774)
Q Consensus 68 ~p~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~ 109 (774)
+++.+|.|++..+||.|..|+...+.+. + +...+|.-|.
T Consensus 155 ~~~~~v~~~~~~dEE~g~~G~~~~~~~~-~--~~d~~i~~ep 193 (422)
T PRK06915 155 ELKGDVIFQSVIEEESGGAGTLAAILRG-Y--KADGAIIPEP 193 (422)
T ss_pred CCCCcEEEEEecccccCCcchHHHHhcC-c--CCCEEEECCC
Confidence 7888999999999999888998877542 2 2344454443
No 44
>PRK06837 acetylornithine deacetylase; Provisional
Probab=98.42 E-value=1.2e-06 Score=99.64 Aligned_cols=83 Identities=27% Similarity=0.242 Sum_probs=70.8
Q ss_pred eccceEEEEEcCCCCCCCCCCeEEEeecccCcCCC---------------------CCCCCChhHHHHHHHHHHHHHHcC
Q 004095 8 SDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAA---------------------EGAGDCSSCVAVMLELARAMSQWA 66 (774)
Q Consensus 8 ~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~s---------------------pGA~DngsGvAvmLElaR~L~~~~ 66 (774)
.+..||+++++|+. .+.+.|++.+|+|+++.+ .|+.|+..|++++|.+++.+++.+
T Consensus 81 ~~~~nl~a~~~g~~---~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~ 157 (427)
T PRK06837 81 SGAPNVVGTYRPAG---KTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAG 157 (427)
T ss_pred CCCceEEEEecCCC---CCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcC
Confidence 35789999998751 235789999999999853 499999999999999999999887
Q ss_pred CCCCccEEEEEeCCcCCCCcchHHHHh
Q 004095 67 HGFKNAVIFLFNTGEEEGLNGAHSFVT 93 (774)
Q Consensus 67 ~~p~~~IiFlf~~aEE~gl~GS~~fv~ 93 (774)
..++++|.|+|+.+||.+..|+...+.
T Consensus 158 ~~~~~~i~~~~~~dEE~~g~g~~~~~~ 184 (427)
T PRK06837 158 LAPAARVHFQSVIEEESTGNGALSTLQ 184 (427)
T ss_pred CCCCCcEEEEEEeccccCCHhHHHHHh
Confidence 778899999999999988788877664
No 45
>PRK08262 hypothetical protein; Provisional
Probab=98.41 E-value=8.8e-07 Score=102.32 Aligned_cols=81 Identities=21% Similarity=0.257 Sum_probs=69.6
Q ss_pred ceEEEEEcCCCCCCCCCCeEEEeecccCcCC-----------------------CCCCCCChhHHHHHHHHHHHHHHcCC
Q 004095 11 NHIVLRIQPKYASEAAENAILVSSHIDTVFA-----------------------AEGAGDCSSCVAVMLELARAMSQWAH 67 (774)
Q Consensus 11 ~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~-----------------------spGA~DngsGvAvmLElaR~L~~~~~ 67 (774)
.|+++.++|+. ...+.|++.+|+|+++. ++|+.|+..|+|++|.+++.+++.+.
T Consensus 98 ~~vv~~~~g~~---~~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~ 174 (486)
T PRK08262 98 HSLLYTWKGSD---PSLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQGF 174 (486)
T ss_pred ccEEEEEECCC---CCCCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHcCC
Confidence 58999997751 22278999999999874 35999999999999999999998776
Q ss_pred CCCccEEEEEeCCcCCCCcchHHHHhh
Q 004095 68 GFKNAVIFLFNTGEEEGLNGAHSFVTQ 94 (774)
Q Consensus 68 ~p~~~IiFlf~~aEE~gl~GS~~fv~~ 94 (774)
.++++|.|+|..+||.|..|++.+++.
T Consensus 175 ~l~~~I~llf~~dEE~g~~G~~~l~~~ 201 (486)
T PRK08262 175 QPRRTIYLAFGHDEEVGGLGARAIAEL 201 (486)
T ss_pred CCCCeEEEEEecccccCCcCHHHHHHH
Confidence 788999999999999998899988853
No 46
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=98.40 E-value=1.3e-06 Score=100.76 Aligned_cols=103 Identities=18% Similarity=0.302 Sum_probs=77.4
Q ss_pred CCceEEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCCC------------------------CCCC---CChhHHH
Q 004095 1 MGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAA------------------------EGAG---DCSSCVA 53 (774)
Q Consensus 1 ~g~~~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~s------------------------pGA~---DngsGvA 53 (774)
+|.....++..|++++++|+. +....+.|++++|+|+++.+ +|+. |+..|++
T Consensus 37 ~G~~~~~~~~~n~~~~~~~~~-g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva 115 (477)
T TIGR01893 37 LGLEVKQDEVGNVLIRKPATP-GYENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVA 115 (477)
T ss_pred cCCeEEEeCCCeEEEEEcCCC-CCCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHH
Confidence 356666677789999998752 11234679999999999742 4553 9999999
Q ss_pred HHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccCC
Q 004095 54 VMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 111 (774)
Q Consensus 54 vmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~G 111 (774)
++|+++|. . ..++++|.++|+.+||.|+.||+.+..+. ......+|.|..+
T Consensus 116 ~~l~~~~~---~-~~~~~~i~~~~~~dEE~g~~Gs~~l~~~~---~~~~~~~~~d~~~ 166 (477)
T TIGR01893 116 MGLAILED---N-NLKHPPLELLFTVDEETGMDGALGLDENW---LSGKILINIDSEE 166 (477)
T ss_pred HHHHHHhc---C-CCCCCCEEEEEEeccccCchhhhhcChhh---cCCcEEEEecCCC
Confidence 99999875 2 23566999999999999999999997432 2336678888643
No 47
>PRK07318 dipeptidase PepV; Reviewed
Probab=98.39 E-value=1.1e-06 Score=100.99 Aligned_cols=86 Identities=17% Similarity=0.238 Sum_probs=73.1
Q ss_pred EeccceEEEEEcCCCCCCCCCCeEEEeecccCcCC-------------------CCCCCCChhHHHHHHHHHHHHHHcCC
Q 004095 7 YSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQWAH 67 (774)
Q Consensus 7 y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~-------------------spGA~DngsGvAvmLElaR~L~~~~~ 67 (774)
++...|++++++.. ...+.|++++|+|+++. ++|+.|+..|+|+++.+++.|++.+.
T Consensus 63 ~~~~~n~~~~~~~~----~~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g~ 138 (466)
T PRK07318 63 TKNVDNYAGHIEYG----EGEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKELGL 138 (466)
T ss_pred EEEecCccceEEEC----CCCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHcCC
Confidence 34456888887642 13357999999999974 38999999999999999999998877
Q ss_pred CCCccEEEEEeCCcCCCCcchHHHHhhCC
Q 004095 68 GFKNAVIFLFNTGEEEGLNGAHSFVTQHP 96 (774)
Q Consensus 68 ~p~~~IiFlf~~aEE~gl~GS~~fv~~h~ 96 (774)
+++++|.|++...||.|..|++.++++++
T Consensus 139 ~~~~~i~l~~~~DEE~g~~G~~~l~~~~~ 167 (466)
T PRK07318 139 PLSKKVRFIVGTDEESGWKCMDYYFEHEE 167 (466)
T ss_pred CCCccEEEEEEcccccCchhHHHHHHhCC
Confidence 78889999999999999999999998764
No 48
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=98.38 E-value=1.7e-06 Score=97.34 Aligned_cols=96 Identities=25% Similarity=0.299 Sum_probs=75.6
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecccCcCC---------------------CCCCCCChhHHHHHHHHHHHHHHcCC
Q 004095 9 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAH 67 (774)
Q Consensus 9 ~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~---------------------spGA~DngsGvAvmLElaR~L~~~~~ 67 (774)
...|++++++|++ ...+.|++++|+|+++. +.|+.|+.+|+|++|++++.+++.+.
T Consensus 56 g~~~l~~~~~g~~---~~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~ 132 (400)
T TIGR01880 56 GKPVVVLTWPGSN---PELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGF 132 (400)
T ss_pred CceeEEEEEecCC---CCCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCC
Confidence 4679999998751 22368999999999973 26899999999999999999998777
Q ss_pred CCCccEEEEEeCCcCCCC-cchHHHHhhCCCccCceEEEEec
Q 004095 68 GFKNAVIFLFNTGEEEGL-NGAHSFVTQHPWSTTIRVAIDLE 108 (774)
Q Consensus 68 ~p~~~IiFlf~~aEE~gl-~GS~~fv~~h~~~~~i~a~INLD 108 (774)
+++++|.|+|..+||.|- .|++.++++. ..+.+.+.+.+|
T Consensus 133 ~~~~~v~l~~~~dEE~g~~~G~~~~~~~~-~~~~~~~~~~~d 173 (400)
T TIGR01880 133 KFKRTIHISFVPDEEIGGHDGMEKFAKTD-EFKALNLGFALD 173 (400)
T ss_pred CCCceEEEEEeCCcccCcHhHHHHHHHhh-hccCCceEEEEc
Confidence 788999999999999875 6999988642 223344445554
No 49
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.37 E-value=1.5e-06 Score=95.74 Aligned_cols=92 Identities=30% Similarity=0.350 Sum_probs=74.0
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecccCcCC--------------CCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEE
Q 004095 10 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIF 75 (774)
Q Consensus 10 ~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~--------------spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiF 75 (774)
..|+++++.+. +++.|++++|+|+++. +.|+.|+.+|+|++|.+++.+. .++++|.|
T Consensus 49 ~~~~~~~~~~~-----~~~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~ 119 (352)
T PRK13007 49 GNSVVARTDLG-----RPSRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTL 119 (352)
T ss_pred CCeEEEEccCC-----CCCeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEE
Confidence 46999998432 2236999999999884 4899999999999999999994 36789999
Q ss_pred EEeCCcCCCC--cchHHHHhhCCCccCceEEEEeccC
Q 004095 76 LFNTGEEEGL--NGAHSFVTQHPWSTTIRVAIDLEAM 110 (774)
Q Consensus 76 lf~~aEE~gl--~GS~~fv~~h~~~~~i~a~INLD~~ 110 (774)
+|.++||.|. .|+..++.+++...+..++|+.|..
T Consensus 120 ~~~~~EE~~~~~~G~~~~~~~~~~~~~~d~~i~~ep~ 156 (352)
T PRK13007 120 VFYDCEEVEAEANGLGRLAREHPEWLAGDFAILLEPT 156 (352)
T ss_pred EEEecccccCCcccHHHHHHhcccccCCCEEEEecCC
Confidence 9999999864 5888888766544556788888853
No 50
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=98.34 E-value=1.5e-06 Score=100.14 Aligned_cols=85 Identities=16% Similarity=0.223 Sum_probs=72.6
Q ss_pred eccceEEEEEcCCCCCCCCCCeEEEeecccCcCC-------------------CCCCCCChhHHHHHHHHHHHHHHcCCC
Q 004095 8 SDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQWAHG 68 (774)
Q Consensus 8 ~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~-------------------spGA~DngsGvAvmLElaR~L~~~~~~ 68 (774)
+...|+++++.+. .+++.|++.+|+|+++. ++|+.|+..|++++|..+++|++.+.+
T Consensus 63 ~~~~~~~~~~~~~----~~~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~~~ 138 (466)
T TIGR01886 63 KNFDNYAGHVEYG----AGDERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELGLP 138 (466)
T ss_pred EEecCCceeEEec----CCCCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhCCC
Confidence 3345777776553 24578999999999864 489999999999999999999988888
Q ss_pred CCccEEEEEeCCcCCCCcchHHHHhhCC
Q 004095 69 FKNAVIFLFNTGEEEGLNGAHSFVTQHP 96 (774)
Q Consensus 69 p~~~IiFlf~~aEE~gl~GS~~fv~~h~ 96 (774)
++++|+|++...||.|..|++.|+++++
T Consensus 139 ~~~~i~~~~~~dEE~g~~g~~~~~~~~~ 166 (466)
T TIGR01886 139 PSKKIRFVVGTNEETGWVDMDYYFKHEE 166 (466)
T ss_pred CCCCEEEEEECccccCcccHHHHHhcCc
Confidence 8999999999999999999999997664
No 51
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=98.34 E-value=2.3e-06 Score=96.85 Aligned_cols=89 Identities=21% Similarity=0.262 Sum_probs=69.2
Q ss_pred CCceE-EEec-cceEEEEEcCCCCCCCCCCeEEEeecccCcCC-------------------------------------
Q 004095 1 MGRTL-IYSD-LNHIVLRIQPKYASEAAENAILVSSHIDTVFA------------------------------------- 41 (774)
Q Consensus 1 ~g~~~-~y~~-~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~------------------------------------- 41 (774)
+|..+ ..++ ..||+++++|+. ....+.|++.||+||++.
T Consensus 46 lG~~~v~~d~~~gnv~~~~~~~~--~~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 123 (410)
T TIGR01882 46 LGLQDAHYDEKNGYVIATIPSNT--DKDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLS 123 (410)
T ss_pred cCCceEEEcCCceEEEEEecCCC--CCCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHH
Confidence 46653 3455 789999998852 112388999999999862
Q ss_pred ---------C-----CCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCcchHHHHh
Q 004095 42 ---------A-----EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVT 93 (774)
Q Consensus 42 ---------s-----pGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~GS~~fv~ 93 (774)
+ .| .|+.+|+|+||++++.|++.+..++.+|.|+|..+||.| .|++.+..
T Consensus 124 ~~~g~~~i~~~g~~l~G-~D~KgglAa~l~A~~~L~e~~~~~~g~I~~~ft~dEE~g-~Ga~~l~~ 187 (410)
T TIGR01882 124 GYKGQTLITTDGTTLLG-ADDKAGIAEIMTAADYLINHPEIKHGTIRVAFTPDEEIG-RGAHKFDV 187 (410)
T ss_pred hccCceEEEcCCCEeec-ccCHHHHHHHHHHHHHHHhCCCCCCCCEEEEEECcccCC-cCcchhhh
Confidence 1 23 699999999999999998853345778999999999998 59988864
No 52
>PRK07522 acetylornithine deacetylase; Provisional
Probab=98.34 E-value=2.3e-06 Score=95.40 Aligned_cols=93 Identities=22% Similarity=0.277 Sum_probs=73.4
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecccCcCC--------------------CCCCCCChhHHHHHHHHHHHHHHcCCCC
Q 004095 10 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGF 69 (774)
Q Consensus 10 ~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~--------------------spGA~DngsGvAvmLElaR~L~~~~~~p 69 (774)
..||++++.++ +.+.|++.+|+|+++. +.|+.|+..|+|++|++++.|.+. ++
T Consensus 52 ~~nv~a~~~~~-----~~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~ 124 (385)
T PRK07522 52 KANLFATIGPA-----DRGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA--PL 124 (385)
T ss_pred cccEEEEeCCC-----CCCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC--CC
Confidence 47999999543 2467999999999863 479999999999999999999875 46
Q ss_pred CccEEEEEeCCcCCCCcchHHHHhhCCC-ccCceEEEEecc
Q 004095 70 KNAVIFLFNTGEEEGLNGAHSFVTQHPW-STTIRVAIDLEA 109 (774)
Q Consensus 70 ~~~IiFlf~~aEE~gl~GS~~fv~~h~~-~~~i~a~INLD~ 109 (774)
+++|.|+|..+||.|..|++.++++... ..+...+|..|.
T Consensus 125 ~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~~d~~i~~ep 165 (385)
T PRK07522 125 RRPLHLAFSYDEEVGCLGVPSMIARLPERGVKPAGCIVGEP 165 (385)
T ss_pred CCCEEEEEEeccccCCccHHHHHHHhhhcCCCCCEEEEccC
Confidence 7899999999999998999999865422 122345555554
No 53
>PRK09961 exoaminopeptidase; Provisional
Probab=98.32 E-value=1.4e-05 Score=88.66 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=99.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccCCCC----------
Q 004095 44 GAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGIG---------- 113 (774)
Q Consensus 44 GA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~G~g---------- 113 (774)
-|-||-+||++++|++|.+++. ++..++.|+|+..||.|+.||+.-...- .. ..+|.+|.+-..
T Consensus 163 kalDnR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~rGa~~aa~~i--~p--d~~I~vDv~~~~d~~~~~~~~~ 236 (344)
T PRK09961 163 KAFDDRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGLRGGQTATRAV--SP--DVAIVLDTACWAKNFDYGAANH 236 (344)
T ss_pred eechhhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccchHHHHHHHhcc--CC--CEEEEEeccCCCCCCCCCCCcc
Confidence 3889999999999999999764 5689999999999999999999877432 22 336666654321
Q ss_pred -----CCcceee-cCC--ChHHHHHHHHHhc---CCCCcccchhccccCCCCCCCchHHHhhc-CCCeEEEEeeeCCCCC
Q 004095 114 -----GKSGLFQ-AGP--HPWAVENFAAAAK---YPSGQVTAQDLFASGAITSATDFQVYKEV-AGLSGLDFAYTDKSAV 181 (774)
Q Consensus 114 -----g~~~lfq-~g~--~~~li~~~~~~a~---~P~~~~~~~d~f~~g~ips~TD~~~F~~~-~GIPgld~a~~~~~~~ 181 (774)
|+.+... .++ ++.+.+...+.++ .|+.. +.+ ...+||-..|... .|+|.+.++.- ..+
T Consensus 237 ~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~----~~~----~ggGTDa~~~~~~~~Giptv~ig~p--~ry 306 (344)
T PRK09961 237 RQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIGIPLQA----DMF----SNGGTDGGAVHLTGTGVPTVVMGPA--TRH 306 (344)
T ss_pred cccCCCceEEEccCCcCCCHHHHHHHHHHHHHcCCCcEE----Eec----CCCcchHHHHHHhCCCCCEEEechh--hhc
Confidence 2222121 122 5666666555442 23211 111 1236888876542 68999988652 234
Q ss_pred CCCcCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 004095 182 YHTKNDKLDLLKPGSLQHLGENMLAFLLQA 211 (774)
Q Consensus 182 YHT~~Dt~d~id~~slq~~g~~vl~~v~~l 211 (774)
-||+. |.++.+.+.++.+.+.+++..+
T Consensus 307 ~Hs~~---E~v~~~D~~~~~~Ll~~~i~~l 333 (344)
T PRK09961 307 GHCAA---SIADCRDILQMIQLLSALIQRL 333 (344)
T ss_pred ccChh---heEEHHHHHHHHHHHHHHHHHc
Confidence 59877 7788888888888888877554
No 54
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=98.32 E-value=2e-06 Score=94.89 Aligned_cols=97 Identities=22% Similarity=0.195 Sum_probs=79.7
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecccCcCC---------------------CCCCCCChhHHHHHHHHHHHHHHcCCC
Q 004095 10 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHG 68 (774)
Q Consensus 10 ~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~---------------------spGA~DngsGvAvmLElaR~L~~~~~~ 68 (774)
..+++.+++|.+ ..-+.||+++|.|.||. +.||.|+.+-++.+||++|.|..++.+
T Consensus 74 ~~~~l~T~~GS~---P~L~silL~SH~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~k 150 (420)
T KOG2275|consen 74 KYVLLYTWLGSD---PELPSILLNSHTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFK 150 (420)
T ss_pred eeEEEEEeeCCC---CCccceeeeccccccCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCC
Confidence 678999999973 35678999999999975 479999999999999999999999999
Q ss_pred CCccEEEEEeCCcCCC-CcchHHHHhhCCCccCceEEEEeccC
Q 004095 69 FKNAVIFLFNTGEEEG-LNGAHSFVTQHPWSTTIRVAIDLEAM 110 (774)
Q Consensus 69 p~~~IiFlf~~aEE~g-l~GS~~fv~~h~~~~~i~a~INLD~~ 110 (774)
|+|+|...|--+||.| -.|++.|++ +...++.-..+-+|--
T Consensus 151 p~Rti~lsfvpDEEi~G~~Gm~~fa~-~~~~~~l~~~filDEG 192 (420)
T KOG2275|consen 151 PKRTIHLSFVPDEEIGGHIGMKEFAK-TEEFKKLNLGFILDEG 192 (420)
T ss_pred cCceEEEEecCchhccCcchHHHHhh-hhhhcccceeEEecCC
Confidence 9999999999999987 899999996 3322333334444433
No 55
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.31 E-value=2.9e-06 Score=94.25 Aligned_cols=80 Identities=21% Similarity=0.302 Sum_probs=67.4
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecccCcCC---------------------CCCCCCChhHHHHHHHHHHHHHHcCC
Q 004095 9 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAH 67 (774)
Q Consensus 9 ~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~---------------------spGA~DngsGvAvmLElaR~L~~~~~ 67 (774)
+..|+++++ |. +++.|++++|+|+++. +.|+.|+..|++++|++++.+.+.+.
T Consensus 46 ~~~n~~~~~-g~-----~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~ 119 (375)
T PRK13009 46 DVKNLWARR-GT-----EGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHP 119 (375)
T ss_pred CCcEEEEEe-cC-----CCCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcC
Confidence 467999987 43 3467999999999874 25899999999999999999988777
Q ss_pred CCCccEEEEEeCCcCCC-CcchHHHHhh
Q 004095 68 GFKNAVIFLFNTGEEEG-LNGAHSFVTQ 94 (774)
Q Consensus 68 ~p~~~IiFlf~~aEE~g-l~GS~~fv~~ 94 (774)
+++++|+|++..+||.+ ..|++.+++.
T Consensus 120 ~~~~~i~~~~~~~EE~~~~~G~~~~~~~ 147 (375)
T PRK13009 120 DHKGSIAFLITSDEEGPAINGTVKVLEW 147 (375)
T ss_pred CCCceEEEEEEeecccccccCHHHHHHH
Confidence 78899999999999975 4699988743
No 56
>PRK06156 hypothetical protein; Provisional
Probab=98.30 E-value=3.1e-06 Score=98.79 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=76.0
Q ss_pred eccceEE--EEEcCCCCCCCCCCeEEEeecccCcCC-------------------------CCCCCCChhHHHHHHHHHH
Q 004095 8 SDLNHIV--LRIQPKYASEAAENAILVSSHIDTVFA-------------------------AEGAGDCSSCVAVMLELAR 60 (774)
Q Consensus 8 ~~~~NVI--~~i~g~~~~~~~~~~ILl~AHyDS~~~-------------------------spGA~DngsGvAvmLElaR 60 (774)
+...|+| ++++|+ .++.|++++|+|+++. +.|+.|+..|+++++.+++
T Consensus 93 ~~~~~~v~~~~~~g~-----~~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~ 167 (520)
T PRK06156 93 RNVDNRVLEIGLGGS-----GSDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMK 167 (520)
T ss_pred EecCCeEEEEEecCC-----CCCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHH
Confidence 4445765 677653 2357999999999963 3689999999999999999
Q ss_pred HHHHcCCCCCccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEecc
Q 004095 61 AMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEA 109 (774)
Q Consensus 61 ~L~~~~~~p~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~ 109 (774)
.|.+.+.+++++|.|+|..+||.|..|++.++.++. ....++|+|+
T Consensus 168 ~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~---~~~~~~~~D~ 213 (520)
T PRK06156 168 AIKDSGLPLARRIELLVYTTEETDGDPLKYYLERYT---PPDYNITLDA 213 (520)
T ss_pred HHHHcCCCCCceEEEEEecccccCchhHHHHHHhcC---CCCeEEeeCC
Confidence 998877778889999999999999999999997653 2356677775
No 57
>PRK08554 peptidase; Reviewed
Probab=98.27 E-value=4.7e-06 Score=95.25 Aligned_cols=95 Identities=21% Similarity=0.251 Sum_probs=75.2
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecccCcCC--------------------CCCCCCChhHHHHHHHHHHHHHHcCCC
Q 004095 9 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHG 68 (774)
Q Consensus 9 ~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~--------------------spGA~DngsGvAvmLElaR~L~~~~~~ 68 (774)
+..|+++++ |. .++.|++.+|+|+++. ++|+.|+..|+|++|.+++.|++. .
T Consensus 51 ~~~~l~~~~-~~-----~~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~--~ 122 (438)
T PRK08554 51 GYYAVYGEI-GE-----GKPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE--P 122 (438)
T ss_pred CceEEEEEe-CC-----CCCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc--C
Confidence 346999987 32 2357999999999864 389999999999999999999874 3
Q ss_pred CCccEEEEEeCCcCCCCcchHHHHhhCC-CccCceEEEEeccCC
Q 004095 69 FKNAVIFLFNTGEEEGLNGAHSFVTQHP-WSTTIRVAIDLEAMG 111 (774)
Q Consensus 69 p~~~IiFlf~~aEE~gl~GS~~fv~~h~-~~~~i~a~INLD~~G 111 (774)
++++|+|+++..||.|..++..++++.. ......++|+.|..+
T Consensus 123 ~~~~i~l~~~~dEE~g~~~~~~~~~~~~~~~~~~~~~iv~Ept~ 166 (438)
T PRK08554 123 LNGKVIFAFTGDEEIGGAMAMHIAEKLREEGKLPKYMINADGIG 166 (438)
T ss_pred CCCCEEEEEEcccccCccccHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 6788999999999998877777665432 224567899999865
No 58
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=98.27 E-value=3.6e-06 Score=94.09 Aligned_cols=96 Identities=27% Similarity=0.289 Sum_probs=74.5
Q ss_pred ceEEEEEcCCCCCCCCCCeEEEeecccCcCC-------------------------------CCCCCCChhHHHHHHHHH
Q 004095 11 NHIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------------------AEGAGDCSSCVAVMLELA 59 (774)
Q Consensus 11 ~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~-------------------------------spGA~DngsGvAvmLEla 59 (774)
.||++++.+. +.+.|++++|+|+++. +.|+.|+.+|+|+||+++
T Consensus 41 ~nvva~~~~~-----~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~ 115 (373)
T TIGR01900 41 DNVLARTDFG-----KASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLA 115 (373)
T ss_pred CEEEEecCCC-----CCCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHH
Confidence 3999997432 2457999999999852 378999999999999999
Q ss_pred HHHHH--cCCCCCccEEEEEeCCcCCC--CcchHHHHhhCCCccCceEEEEeccCC
Q 004095 60 RAMSQ--WAHGFKNAVIFLFNTGEEEG--LNGAHSFVTQHPWSTTIRVAIDLEAMG 111 (774)
Q Consensus 60 R~L~~--~~~~p~~~IiFlf~~aEE~g--l~GS~~fv~~h~~~~~i~a~INLD~~G 111 (774)
+.+.+ .+..++.+|.|+|..+||.+ ..|+..++++++...+..++|..|..+
T Consensus 116 ~~l~~~~~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~~~~~d~~iv~Ept~ 171 (373)
T TIGR01900 116 ATLDGRAPETELKHDLTLIAYDCEEVAAEKNGLGHIRDAHPDWLAADFAIIGEPTG 171 (373)
T ss_pred HHHhhhccccCCCCCEEEEEEecccccCCCCCHHHHHHhCcccccCCEEEEECCCC
Confidence 99954 24467889999999999986 369999997765333456677776543
No 59
>PRK05111 acetylornithine deacetylase; Provisional
Probab=98.26 E-value=5.3e-06 Score=92.54 Aligned_cols=78 Identities=23% Similarity=0.347 Sum_probs=65.9
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecccCcCC--------------------CCCCCCChhHHHHHHHHHHHHHHcCCCC
Q 004095 10 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGF 69 (774)
Q Consensus 10 ~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~--------------------spGA~DngsGvAvmLElaR~L~~~~~~p 69 (774)
..|+++++ |. .+ +.|++.+|+|+++. ++|+.|+..++|++|++++.|.+. .+
T Consensus 60 ~~nvia~~-g~----~~-~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~ 131 (383)
T PRK05111 60 KFNLLASL-GS----GE-GGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT--KL 131 (383)
T ss_pred CceEEEEe-CC----CC-CeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc--CC
Confidence 36999999 43 12 35999999999863 489999999999999999999864 45
Q ss_pred CccEEEEEeCCcCCCCcchHHHHhhC
Q 004095 70 KNAVIFLFNTGEEEGLNGAHSFVTQH 95 (774)
Q Consensus 70 ~~~IiFlf~~aEE~gl~GS~~fv~~h 95 (774)
+.+|+|+|..+||.|..|++.++++.
T Consensus 132 ~~~i~~~~~~~EE~g~~G~~~~~~~~ 157 (383)
T PRK05111 132 KKPLYILATADEETSMAGARAFAEAT 157 (383)
T ss_pred CCCeEEEEEeccccCcccHHHHHhcC
Confidence 67899999999999999999999654
No 60
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=98.25 E-value=6.1e-06 Score=91.67 Aligned_cols=93 Identities=18% Similarity=0.277 Sum_probs=72.6
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecccCcCC-----------------CCCCCCChhHHHHHHHHHHHHHHcCCCCCc
Q 004095 9 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA-----------------AEGAGDCSSCVAVMLELARAMSQWAHGFKN 71 (774)
Q Consensus 9 ~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~-----------------spGA~DngsGvAvmLElaR~L~~~~~~p~~ 71 (774)
...|+++++.++ .+++.|++++|+|+++. +.|+ .+++|+++.+++.|++.+.++++
T Consensus 42 ~~~~vva~~~~~----~~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~---~~~~a~~l~a~~~l~~~~~~~~~ 114 (363)
T TIGR01891 42 GATGVVATIGGG----KPGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGH---DLHTAILLGTAKLLKKLADLLEG 114 (363)
T ss_pred CCcEEEEEEeCC----CCCCEEEEEeccCCCCcccccCCCcccCCCCceecCcC---HHHHHHHHHHHHHHHhchhhCCc
Confidence 458999999764 23468999999999973 1233 26789999999999886666788
Q ss_pred cEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccC
Q 004095 72 AVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 110 (774)
Q Consensus 72 ~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~ 110 (774)
+|.|+|..+||.+ .|++.+++++ +.+++.++|+.|..
T Consensus 115 ~i~~~~~~dEE~~-~G~~~~~~~~-~~~~~d~~i~~e~~ 151 (363)
T TIGR01891 115 TVRLIFQPAEEGG-GGATKMIEDG-VLDDVDAILGLHPD 151 (363)
T ss_pred eEEEEEeecCcCc-chHHHHHHCC-CCCCcCEEEEECCC
Confidence 9999999999986 7999998654 44566778888764
No 61
>PRK07205 hypothetical protein; Provisional
Probab=98.25 E-value=4.9e-06 Score=95.06 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=67.8
Q ss_pred ceEEEEEcCCCCCCCCCCeEEEeecccCcCC---------------------CCCCCCChhHHHHHHHHHHHHHHcCCCC
Q 004095 11 NHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGF 69 (774)
Q Consensus 11 ~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~---------------------spGA~DngsGvAvmLElaR~L~~~~~~p 69 (774)
.|+++++ |. .++.|++++|+|++|. ++|+.|+..|+|++|++++.|.+.+.++
T Consensus 65 ~~~~~~~-g~-----~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~~~~ 138 (444)
T PRK07205 65 YYGYAEI-GQ-----GEELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLDAGVQF 138 (444)
T ss_pred eEEEEEe-cC-----CCcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCC
Confidence 4556655 32 2357999999999974 3799999999999999999999888788
Q ss_pred CccEEEEEeCCcCCCCcchHHHHhhCC
Q 004095 70 KNAVIFLFNTGEEEGLNGAHSFVTQHP 96 (774)
Q Consensus 70 ~~~IiFlf~~aEE~gl~GS~~fv~~h~ 96 (774)
+++|.|+|.+.||.|..|++.|+++.+
T Consensus 139 ~~~i~l~~~~dEE~g~~g~~~~~~~~~ 165 (444)
T PRK07205 139 NKRIRFIFGTDEETLWRCMNRYNEVEE 165 (444)
T ss_pred CCcEEEEEECCcccCcccHHHHHhCCC
Confidence 899999999999999999999996543
No 62
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=98.25 E-value=6.7e-06 Score=95.17 Aligned_cols=102 Identities=18% Similarity=0.267 Sum_probs=77.4
Q ss_pred CCceEEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCC------------------------CCCCC---CChhHHH
Q 004095 1 MGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA------------------------AEGAG---DCSSCVA 53 (774)
Q Consensus 1 ~g~~~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~------------------------spGA~---DngsGvA 53 (774)
+|.........|++++.+++. +....+.|++.+|+|+|+. ++|++ |+++|+|
T Consensus 43 ~G~~~~~d~~gnvi~~~~~~~-g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva 121 (485)
T PRK15026 43 KGFHVERDQVGNILIRKPATA-GMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMA 121 (485)
T ss_pred CCCEEEEEecCeEEEEEcCCC-CCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHH
Confidence 355555567789999987531 1134577999999999963 26774 9999999
Q ss_pred HHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccC
Q 004095 54 VMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 110 (774)
Q Consensus 54 vmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~ 110 (774)
.+|+++ .+.+. ++.+|.++|+..||.|+.||+.+.. . ..+.+++||+|..
T Consensus 122 ~~l~~l---~~~~~-~~~~i~~l~t~dEE~G~~ga~~l~~--~-~~~~~~~i~~e~~ 171 (485)
T PRK15026 122 SALAVL---ADENV-VHGPLEVLLTMTEEAGMDGAFGLQS--N-WLQADILINTDSE 171 (485)
T ss_pred HHHHHH---HhCCC-CCCCEEEEEEcccccCcHhHHHhhh--c-cCCcCEEEEeCCC
Confidence 998876 33332 3678999999999999999999863 2 2457899999986
No 63
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=98.23 E-value=6.3e-06 Score=92.99 Aligned_cols=96 Identities=23% Similarity=0.276 Sum_probs=82.0
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecccCcCCC---------------------CCCCCChhHHHHHHHHHHHHHHcCCC
Q 004095 10 LNHIVLRIQPKYASEAAENAILVSSHIDTVFAA---------------------EGAGDCSSCVAVMLELARAMSQWAHG 68 (774)
Q Consensus 10 ~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~s---------------------pGA~DngsGvAvmLElaR~L~~~~~~ 68 (774)
..|+++++.+. .+++.|++++|+|++|.+ .|+.|+..++++++.+++.+.+.+..
T Consensus 62 ~~n~~~~~~~~----~~~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~ 137 (409)
T COG0624 62 RPNLVARLGGG----DGGPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGE 137 (409)
T ss_pred ceEEEEEecCC----CCCCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCC
Confidence 34999999886 233899999999999862 79999999999999999999997778
Q ss_pred CCccEEEEEeCCcCCCCcchHHHHhhCCC--ccCceEEEEecc
Q 004095 69 FKNAVIFLFNTGEEEGLNGAHSFVTQHPW--STTIRVAIDLEA 109 (774)
Q Consensus 69 p~~~IiFlf~~aEE~gl~GS~~fv~~h~~--~~~i~a~INLD~ 109 (774)
++.+|.+++...||.|-.|...|+.++.. ..+..+.|..|.
T Consensus 138 ~~~~v~~~~~~dEE~g~~~~~~~~~~~~~~~~~~~d~~i~~E~ 180 (409)
T COG0624 138 LPGDVRLLFTADEESGGAGGKAYLEEGEEALGIRPDYEIVGEP 180 (409)
T ss_pred CCeEEEEEEEeccccCCcchHHHHHhcchhhccCCCEEEeCCC
Confidence 88999999999999999999999977642 345677777776
No 64
>PRK13004 peptidase; Reviewed
Probab=98.22 E-value=7.6e-06 Score=92.14 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=75.3
Q ss_pred CCce-EEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCC---------------------CCCCCCChhHHHHHHHH
Q 004095 1 MGRT-LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLEL 58 (774)
Q Consensus 1 ~g~~-~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~---------------------spGA~DngsGvAvmLEl 58 (774)
+|+. .......|+++++.|. + +.|++.+|+|+++. ++|+.|+.+|++++|.+
T Consensus 48 ~G~~~~~~~~~~n~~a~~~~~-----~-~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a 121 (399)
T PRK13004 48 VGFDKVEIDPMGNVLGYIGHG-----K-KLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYA 121 (399)
T ss_pred cCCcEEEEcCCCeEEEEECCC-----C-cEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHH
Confidence 3554 2334557999998652 2 67999999999974 25899999999999999
Q ss_pred HHHHHHcCCCCCccEEEEEeCCcCC-CCcchHHHHhhCCCccCceEEEEecc
Q 004095 59 ARAMSQWAHGFKNAVIFLFNTGEEE-GLNGAHSFVTQHPWSTTIRVAIDLEA 109 (774)
Q Consensus 59 aR~L~~~~~~p~~~IiFlf~~aEE~-gl~GS~~fv~~h~~~~~i~a~INLD~ 109 (774)
++.|++.+..++.+|.|+|..+||. +-.|++.++++... +...++..|.
T Consensus 122 ~~~l~~~~~~~~~~i~~~~~~~EE~~~g~~~~~~~~~~~~--~~d~~i~~e~ 171 (399)
T PRK13004 122 AKIIKDLGLDDEYTLYVTGTVQEEDCDGLCWRYIIEEDKI--KPDFVVITEP 171 (399)
T ss_pred HHHHHhcCCCCCCeEEEEEEcccccCcchhHHHHHHhcCC--CCCEEEEccC
Confidence 9999988777889999999999996 45677777754221 2344454454
No 65
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=98.21 E-value=7.4e-06 Score=89.98 Aligned_cols=96 Identities=25% Similarity=0.248 Sum_probs=74.5
Q ss_pred CceEEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCC------------CCCCCCChhHHHHHHHHHHHHHHcCCCC
Q 004095 2 GRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA------------AEGAGDCSSCVAVMLELARAMSQWAHGF 69 (774)
Q Consensus 2 g~~~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~------------spGA~DngsGvAvmLElaR~L~~~~~~p 69 (774)
|+........|++++. +. +.+.|++++|+|+++. ++|+.|+.+|+|+||++++.|++.
T Consensus 31 g~~~~~~~~~~~~~~~-~~-----~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~---- 100 (336)
T TIGR01902 31 GLKLIIDDAGNFILGK-GD-----GHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEK---- 100 (336)
T ss_pred CCEEEECCCCcEEEEe-CC-----CCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhC----
Confidence 4443334457888875 32 2468999999999863 489999999999999999999764
Q ss_pred CccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccCC
Q 004095 70 KNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 111 (774)
Q Consensus 70 ~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~G 111 (774)
..+|.|++..+||.|..|++.+++++.. .++|..|..+
T Consensus 101 ~~~i~~~~~~dEE~g~~G~~~~~~~~~~----~~~ii~ept~ 138 (336)
T TIGR01902 101 GIKVIVSGLVDEESSSKGAREVIDKNYP----FYVIVGEPSG 138 (336)
T ss_pred CCcEEEEEEeCcccCCccHHHHHhhcCC----CEEEEecCCC
Confidence 3589999999999999999999976531 2667777654
No 66
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=98.18 E-value=8.2e-06 Score=90.07 Aligned_cols=94 Identities=22% Similarity=0.165 Sum_probs=72.5
Q ss_pred CceEEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCC------------CCCCCCChhHHHHHHHHHHHHHHcCCCC
Q 004095 2 GRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA------------AEGAGDCSSCVAVMLELARAMSQWAHGF 69 (774)
Q Consensus 2 g~~~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~------------spGA~DngsGvAvmLElaR~L~~~~~~p 69 (774)
|.........|+++ .|+ +.|++++|+|+++. ++|+.|+..|+|++|++++.+.+.+
T Consensus 44 g~~~~~~~~~~~~~--~g~-------~~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~--- 111 (346)
T PRK00466 44 NLKLEILPDSNSFI--LGE-------GDILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG--- 111 (346)
T ss_pred CCeEEEecCCCcEe--cCC-------CeEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcC---
Confidence 44445555667663 332 34999999999974 3899999999999999999998754
Q ss_pred CccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccCC
Q 004095 70 KNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 111 (774)
Q Consensus 70 ~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~G 111 (774)
.++.|+++.+||.|..|++.+++++. +..++|..|..+
T Consensus 112 -~~i~~~~~~dEE~g~~G~~~l~~~~~---~~d~~i~~ep~~ 149 (346)
T PRK00466 112 -IKVMVSGLADEESTSIGAKELVSKGF---NFKHIIVGEPSN 149 (346)
T ss_pred -CCEEEEEEcCcccCCccHHHHHhcCC---CCCEEEEcCCCC
Confidence 35899999999999999999997642 345666666554
No 67
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=98.18 E-value=4.1e-05 Score=84.88 Aligned_cols=144 Identities=17% Similarity=0.187 Sum_probs=90.8
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccCCC--------CCCc
Q 004095 45 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGI--------GGKS 116 (774)
Q Consensus 45 A~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~G~--------gg~~ 116 (774)
|.||.+||+++++++|.+++.+.+++.+|.|+|+..||.| .|+..-+ ..++..+|.+|.... .|+.
T Consensus 181 ~~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG-~gaa~~i-----~pd~a~~i~vd~~~~~p~~~~lg~Gp~ 254 (343)
T TIGR03106 181 HLDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVG-SGASHAL-----PPDVAELVSVDNGTVAPGQNSSEHGVT 254 (343)
T ss_pred ecccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccC-ccchhcc-----cHhhhccEEEEecccCCCCCcCCCCce
Confidence 5899999999999999999876678899999999999999 5632111 223333466664321 1333
Q ss_pred ceee-cC-C-ChHHHHHHHHHh---cCCCCcccchhccccCCCCCCCchHHHhh-cCCCeEEEEeeeCCCCCCCCcCCCc
Q 004095 117 GLFQ-AG-P-HPWAVENFAAAA---KYPSGQVTAQDLFASGAITSATDFQVYKE-VAGLSGLDFAYTDKSAVYHTKNDKL 189 (774)
Q Consensus 117 ~lfq-~g-~-~~~li~~~~~~a---~~P~~~~~~~d~f~~g~ips~TD~~~F~~-~~GIPgld~a~~~~~~~YHT~~Dt~ 189 (774)
+... .+ + ++.+.+...+.| .-|+.. +.+.. .+||-..+.. ..|+|...++. +-.+-|| .
T Consensus 255 i~~~d~~~~~~~~l~~~l~~~A~~~~Ip~Q~----~~~~~----~gtDa~~~~~~~~Gi~t~~i~i--P~Ry~Hs----~ 320 (343)
T TIGR03106 255 IAMADSSGPFDYHLTRKLIRLCQDHGIPHRR----DVFRY----YRSDAASAVEAGHDIRTALVTF--GLDASHG----Y 320 (343)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHcCCCcEE----EecCC----CCChHHHHHHcCCCCCEEEeec--cccchhh----h
Confidence 3122 12 2 566665554443 334422 22221 3566665543 26899987764 2344577 5
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 004095 190 DLLKPGSLQHLGENMLAFL 208 (774)
Q Consensus 190 d~id~~slq~~g~~vl~~v 208 (774)
|.++.+.++++.+.+.+++
T Consensus 321 e~~~~~D~~~~~~Ll~~~~ 339 (343)
T TIGR03106 321 ERTHIDALEALANLLVAYA 339 (343)
T ss_pred hhccHHHHHHHHHHHHHHh
Confidence 8888888888888776655
No 68
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.17 E-value=7.7e-06 Score=91.60 Aligned_cols=90 Identities=20% Similarity=0.225 Sum_probs=70.2
Q ss_pred ceEEEEEcCCCCCCCCCCeEEEeecccCcCC--------------------CCCCCCChhHHHHHHHHHHHHHHcCCCCC
Q 004095 11 NHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGFK 70 (774)
Q Consensus 11 ~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~--------------------spGA~DngsGvAvmLElaR~L~~~~~~p~ 70 (774)
.|++++. +. .++.|++.+|+|+++. +.|+.|+..|++++|++++.+++.+ +
T Consensus 64 ~~~~~~~-~~-----~~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~ 134 (394)
T PRK08651 64 PNLIARR-GS-----GNPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG---D 134 (394)
T ss_pred ceEEEEe-CC-----CCceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC---C
Confidence 3567654 32 2378999999999864 2688999999999999999998754 7
Q ss_pred ccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccCC
Q 004095 71 NAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 111 (774)
Q Consensus 71 ~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~G 111 (774)
++|.|+|..+||.|..|++.++++... +...++..|..|
T Consensus 135 ~~v~~~~~~~EE~g~~G~~~~~~~~~~--~~d~~i~~~~~~ 173 (394)
T PRK08651 135 GNIELAIVPDEETGGTGTGYLVEEGKV--TPDYVIVGEPSG 173 (394)
T ss_pred CCEEEEEecCccccchhHHHHHhccCC--CCCEEEEecCCC
Confidence 899999999999988999999976532 234566666554
No 69
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=98.13 E-value=8.6e-06 Score=93.40 Aligned_cols=84 Identities=18% Similarity=0.233 Sum_probs=70.0
Q ss_pred EeccceEEEEEcCCCCCCCCCCeEEEeecccCcCC-------------------CCCCCCChhHHHHHHHHHHHHHHcCC
Q 004095 7 YSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQWAH 67 (774)
Q Consensus 7 y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~-------------------spGA~DngsGvAvmLElaR~L~~~~~ 67 (774)
++...|++++.+.. ...+.|++++|+|+++. ++|+.|+..|+++++++++.|++.+.
T Consensus 51 ~~~~~~~~~~~~~~----~~~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~~ 126 (447)
T TIGR01887 51 TENVDNYAGYAEYG----QGEEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELGL 126 (447)
T ss_pred EEEecCceEEEEeC----CCCCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCC
Confidence 34566777665432 12357999999999963 48999999999999999999998777
Q ss_pred CCCccEEEEEeCCcCCCCcchHHHHhh
Q 004095 68 GFKNAVIFLFNTGEEEGLNGAHSFVTQ 94 (774)
Q Consensus 68 ~p~~~IiFlf~~aEE~gl~GS~~fv~~ 94 (774)
+++++|.|++...||.|..|++.++++
T Consensus 127 ~~~~~i~~~~~~dEE~g~~g~~~~l~~ 153 (447)
T TIGR01887 127 KLKKKIRFIFGTDEETGWACIDYYFEH 153 (447)
T ss_pred CCCCcEEEEEECCcccCcHhHHHHHHh
Confidence 788999999999999999999999964
No 70
>PRK08652 acetylornithine deacetylase; Provisional
Probab=98.12 E-value=1.4e-05 Score=87.62 Aligned_cols=77 Identities=30% Similarity=0.284 Sum_probs=64.2
Q ss_pred CeEEEeecccCcCC------------CCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCcchHHHHhhC
Q 004095 28 NAILVSSHIDTVFA------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQH 95 (774)
Q Consensus 28 ~~ILl~AHyDS~~~------------spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~GS~~fv~~h 95 (774)
+.|++.+|+|+++. ++|+.|+..|+|+||++++.|.+. .++.+|.|+|..+||.|..|++.+++++
T Consensus 56 ~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~dEE~g~~G~~~~~~~~ 133 (347)
T PRK08652 56 AELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKE--FEDLNVGIAFVSDEEEGGRGSALFAERY 133 (347)
T ss_pred CEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhc--ccCCCEEEEEecCcccCChhHHHHHHhc
Confidence 57999999999974 479999999999999999999864 3467999999999999889999999765
Q ss_pred CCccCceEEEEeccC
Q 004095 96 PWSTTIRVAIDLEAM 110 (774)
Q Consensus 96 ~~~~~i~a~INLD~~ 110 (774)
+. ..+|..|..
T Consensus 134 ~~----d~~i~~ep~ 144 (347)
T PRK08652 134 RP----KMAIVLEPT 144 (347)
T ss_pred CC----CEEEEecCC
Confidence 31 456666653
No 71
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=98.11 E-value=1.4e-05 Score=88.78 Aligned_cols=79 Identities=22% Similarity=0.303 Sum_probs=65.8
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecccCcCC---------------------CCCCCCChhHHHHHHHHHHHHHHcCC
Q 004095 9 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAH 67 (774)
Q Consensus 9 ~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~---------------------spGA~DngsGvAvmLElaR~L~~~~~ 67 (774)
+..|++++. |. +.+.|++++|+|+++. +.|+.|+..|++++++.++.+.+.+.
T Consensus 43 ~~~~~~~~~-g~-----~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~ 116 (370)
T TIGR01246 43 DTKNLWATR-GT-----GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNP 116 (370)
T ss_pred CCceEEEEe-cC-----CCcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHHhcC
Confidence 456999986 32 3467999999999864 26888999999999999999988766
Q ss_pred CCCccEEEEEeCCcCCCC-cchHHHHh
Q 004095 68 GFKNAVIFLFNTGEEEGL-NGAHSFVT 93 (774)
Q Consensus 68 ~p~~~IiFlf~~aEE~gl-~GS~~fv~ 93 (774)
+++.+|+|+|..+||.+- .|++.+++
T Consensus 117 ~~~~~v~~~~~~dEE~~~~~G~~~~~~ 143 (370)
T TIGR01246 117 DHKGSISLLITSDEEGTAIDGTKKVVE 143 (370)
T ss_pred CCCCcEEEEEEeccccCCCcCHHHHHH
Confidence 778899999999999864 69998875
No 72
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=98.04 E-value=3.2e-05 Score=83.87 Aligned_cols=138 Identities=22% Similarity=0.290 Sum_probs=86.7
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccC------CCC-----
Q 004095 45 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM------GIG----- 113 (774)
Q Consensus 45 A~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~------G~g----- 113 (774)
|-||-+||++++|++|.+++. +.+.++.|+|+..||.|+.||+....+- +...+|.+|.. +..
T Consensus 132 alDdR~g~~~lle~l~~l~~~--~~~~~v~~v~tvqEEvG~rGA~~aa~~i----~PD~ai~vD~~~a~d~~~~~~~~~~ 205 (292)
T PF05343_consen 132 ALDDRAGCAVLLELLRELKEK--ELDVDVYFVFTVQEEVGLRGAKTAAFRI----KPDIAIAVDVTPAGDTPGSDEKEQG 205 (292)
T ss_dssp THHHHHHHHHHHHHHHHHTTS--S-SSEEEEEEESSCTTTSHHHHHHHHHH-----CSEEEEEEEEEESSSTTSTTTTSC
T ss_pred eCCchhHHHHHHHHHHHHhhc--CCCceEEEEEEeeeeecCcceeeccccc----CCCEEEEEeeeccCCCCCCchhhcc
Confidence 778999999999999999874 4569999999999999999999877542 12334444432 222
Q ss_pred ---CCcc-eeecCC--ChHHHHHHHHHh---cCCCCcccchhccccCCCCCCCchHHHhhc-CCCeEEEEeeeCCCCCCC
Q 004095 114 ---GKSG-LFQAGP--HPWAVENFAAAA---KYPSGQVTAQDLFASGAITSATDFQVYKEV-AGLSGLDFAYTDKSAVYH 183 (774)
Q Consensus 114 ---g~~~-lfq~g~--~~~li~~~~~~a---~~P~~~~~~~d~f~~g~ips~TD~~~F~~~-~GIPgld~a~~~~~~~YH 183 (774)
|+.+ +...++ ++.+.+...+.+ .-|+-. +.+. ..+||-..+... .|+|+..++. +-.+.|
T Consensus 206 lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~----~~~~----~ggTDa~~~~~~~~Gi~t~~i~i--P~ry~H 275 (292)
T PF05343_consen 206 LGKGPVIRVGDSSMIPNPKLVDKLREIAEENGIPYQR----EVFS----GGGTDAGAIQLSGGGIPTAVISI--PCRYMH 275 (292)
T ss_dssp TTS-EEEEEEETTEESHHHHHHHHHHHHHHTT--EEE----EEES----SSSSTHHHHHTSTTSSEEEEEEE--EEBSTT
T ss_pred CCCCcEEEEccCCCCCCHHHHHHHHHHHHHcCCCeEE----EecC----CcccHHHHHHHcCCCCCEEEEec--ccccCC
Confidence 2222 122222 456665555443 234321 1222 247898888652 5899998765 345789
Q ss_pred CcCCCcCCCCHHHHHHHH
Q 004095 184 TKNDKLDLLKPGSLQHLG 201 (774)
Q Consensus 184 T~~Dt~d~id~~slq~~g 201 (774)
|+. +.++.+.++++.
T Consensus 276 s~~---e~~~~~Di~~~~ 290 (292)
T PF05343_consen 276 SPV---EVIDLDDIEATI 290 (292)
T ss_dssp STT---EEEEHHHHHHHH
T ss_pred Ccc---eEEEHHHHHHHh
Confidence 987 444555555544
No 73
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=97.92 E-value=0.00012 Score=81.28 Aligned_cols=147 Identities=20% Similarity=0.203 Sum_probs=100.7
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccCCCC-----------
Q 004095 45 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGIG----------- 113 (774)
Q Consensus 45 A~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~G~g----------- 113 (774)
|-||-.||++++|++|.+++. +++.++.++|+.-||.|+.||+.-..+-+ . ..+|.+|..-++
T Consensus 176 alDdR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG~rGA~~aa~~i~--p--D~aI~vDv~~~~d~~~~~~~~lg 249 (350)
T TIGR03107 176 AWDNRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVGLRGAHVSTTKFN--P--DIFFAVDCSPAGDIYGDQGGKLG 249 (350)
T ss_pred ccccHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcCchhhhhHHhhCC--C--CEEEEEecCCcCCCCCCCccccC
Confidence 889999999999999999864 57789999999999999999997553322 2 256666754322
Q ss_pred -CCcceee-cCC--ChHHHHHHHHHh---cCCCCcccchhccccCCCCCCCchH--HHhhcCCCeEEEEeeeCCCCCCCC
Q 004095 114 -GKSGLFQ-AGP--HPWAVENFAAAA---KYPSGQVTAQDLFASGAITSATDFQ--VYKEVAGLSGLDFAYTDKSAVYHT 184 (774)
Q Consensus 114 -g~~~lfq-~g~--~~~li~~~~~~a---~~P~~~~~~~d~f~~g~ips~TD~~--~F~~~~GIPgld~a~~~~~~~YHT 184 (774)
|+.+... .++ ++.+.+...+.| .-|+-. .. ...+||-. .+.. .|+|.+.++. +..+-||
T Consensus 250 ~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q~-----~~----~~gGtDa~~~~~~~-~Gvpt~~i~i--p~Ry~Hs 317 (350)
T TIGR03107 250 EGTLLRFFDPGHIMLPRMKDFLLTTAEEAGIKYQY-----YV----AKGGTDAGAAHLKN-SGVPSTTIGV--CARYIHS 317 (350)
T ss_pred CCceEEEecCCCCCCHHHHHHHHHHHHHcCCCcEE-----ec----CCCCchHHHHHHhC-CCCcEEEEcc--CcccccC
Confidence 3433222 233 566666655544 233321 11 11256665 5655 7999998764 3456699
Q ss_pred cCCCcCCCCHHHHHHHHHHHHHHHHHHh
Q 004095 185 KNDKLDLLKPGSLQHLGENMLAFLLQAA 212 (774)
Q Consensus 185 ~~Dt~d~id~~slq~~g~~vl~~v~~la 212 (774)
+. +.++.+.++++.+.+.+++..+.
T Consensus 318 ~~---e~i~~~D~~~~~~Ll~~~i~~l~ 342 (350)
T TIGR03107 318 HQ---TLYSIDDFLAAQAFLQAIVKKLD 342 (350)
T ss_pred hh---heeeHHHHHHHHHHHHHHHHhcC
Confidence 87 67788889999999988887753
No 74
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=97.89 E-value=7.1e-05 Score=84.16 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=66.2
Q ss_pred Cce-EEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCC---------------------CCCCCCChhHHHHHHHHH
Q 004095 2 GRT-LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELA 59 (774)
Q Consensus 2 g~~-~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~---------------------spGA~DngsGvAvmLEla 59 (774)
|+. ....+..|+++++ |. +++.|++++|+|+++. +.|+.|+..|+|++|.++
T Consensus 47 G~~~~~~~~~~n~~~~~-g~-----~~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~ 120 (395)
T TIGR03320 47 GFDKVEIDPMGNVLGYI-GH-----GPKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAG 120 (395)
T ss_pred CCcEEEECCCCCEEEEe-CC-----CCcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHH
Confidence 543 2334457999998 43 2367999999999863 389999999999999999
Q ss_pred HHHHHcCCCCCccEEEEEeCCcCCC-CcchHHHHhh
Q 004095 60 RAMSQWAHGFKNAVIFLFNTGEEEG-LNGAHSFVTQ 94 (774)
Q Consensus 60 R~L~~~~~~p~~~IiFlf~~aEE~g-l~GS~~fv~~ 94 (774)
+.|++.+..++.+|+|++..+||.+ -.|++.++++
T Consensus 121 ~~l~~~g~~~~~~i~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03320 121 KIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred HHHHHcCCCCCceEEEEecccccccCchHHHHHHHh
Confidence 9999877667789999999989964 2334555543
No 75
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=97.87 E-value=9.1e-05 Score=83.33 Aligned_cols=82 Identities=17% Similarity=0.155 Sum_probs=65.2
Q ss_pred EeccceEEEEEcCCCCCCCCCCeEEEeecccCcCC---------------------CCCCCCChhHHHHHHHHHHHHHHc
Q 004095 7 YSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQW 65 (774)
Q Consensus 7 y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~---------------------spGA~DngsGvAvmLElaR~L~~~ 65 (774)
.....|+++++ |. .++.|++.+|+|+++. +.|+.|+..|++++|.+++.+++.
T Consensus 53 ~~~~~~v~~~~-g~-----~~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~ 126 (395)
T TIGR03526 53 IDPMGNVLGYI-GH-----GPKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDL 126 (395)
T ss_pred EcCCCcEEEEe-CC-----CCCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHc
Confidence 33457999998 43 2357999999999873 389999999999999999999987
Q ss_pred CCCCCccEEEEEeCCcCC-CCcchHHHHhh
Q 004095 66 AHGFKNAVIFLFNTGEEE-GLNGAHSFVTQ 94 (774)
Q Consensus 66 ~~~p~~~IiFlf~~aEE~-gl~GS~~fv~~ 94 (774)
+..++.++.|++..+||. +-.|++.++++
T Consensus 127 ~~~~~~~v~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03526 127 GLLDDYTLLVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred CCCCCceEEEEEecccccCCcHhHHHHHhc
Confidence 666778999999999993 33466666654
No 76
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.0001 Score=83.12 Aligned_cols=188 Identities=13% Similarity=0.164 Sum_probs=127.1
Q ss_pred ccceEEEEEcCCCCC--CCC-CCeEEEeecccCcC----CCCCCCCChhHHHHHHHHHHHHHHcC--CCCCccEEEEEeC
Q 004095 9 DLNHIVLRIQPKYAS--EAA-ENAILVSSHIDTVF----AAEGAGDCSSCVAVMLELARAMSQWA--HGFKNAVIFLFNT 79 (774)
Q Consensus 9 ~~~NVI~~i~g~~~~--~~~-~~~ILl~AHyDS~~----~spGA~DngsGvAvmLElaR~L~~~~--~~p~~~IiFlf~~ 79 (774)
+..||..-+++-... .++ .++++..+-+||.. .++||..--++....|..||++++.. ...+|+|.|+|+.
T Consensus 156 ~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~r~pai~nl~rnV~f~~f~ 235 (596)
T KOG2657|consen 156 HSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALKRQPAINNLNRNVFFAFFN 235 (596)
T ss_pred CCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhccCcccccccceeEEEEee
Confidence 457888777664321 122 58999999999964 47899889999999999999998742 4678999999999
Q ss_pred CcCCCCcchHHHHhh---CC--Cc-cC---ceEEEEeccCCCC-CCcc-eeecCC-C----h---HHHHHHHHHh-cCCC
Q 004095 80 GEEEGLNGAHSFVTQ---HP--WS-TT---IRVAIDLEAMGIG-GKSG-LFQAGP-H----P---WAVENFAAAA-KYPS 139 (774)
Q Consensus 80 aEE~gl~GS~~fv~~---h~--~~-~~---i~a~INLD~~G~g-g~~~-lfq~g~-~----~---~li~~~~~~a-~~P~ 139 (774)
||-.+.+||..++-+ |+ .+ ++ +..++.+-.+|-+ ++.+ ++..+. . . ..++.++|.. .+++
T Consensus 236 get~~ylgS~r~~yeme~gk~pva~~s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv~nqtld~L~~~ekSlrs~~f 315 (596)
T KOG2657|consen 236 GETLDYLGSGRAAYEMENGKFPVAIRSDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSVKNQTLDVLDRIEKSLRSHAF 315 (596)
T ss_pred cceeeeccchhhhhHhhcCCCCeeeccCccchheeeecccccccCceEEEEeccchhhhHHHHHHHHHHHHHhcccccCe
Confidence 999999999987644 32 22 34 7888888887753 2322 443221 1 1 2233444432 2343
Q ss_pred CcccchhccccCCCCCCCchHHHhhcCCCeEEEEeeeC---CCCCCCCcCCCcCCCCHHHHH
Q 004095 140 GQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTD---KSAVYHTKNDKLDLLKPGSLQ 198 (774)
Q Consensus 140 ~~~~~~d~f~~g~ips~TD~~~F~~~~GIPgld~a~~~---~~~~YHT~~Dt~d~id~~slq 198 (774)
.. +.++--. ..+|..+=++..++..++.++-++-.+ ...+||+.+|+.|+++...-.
T Consensus 316 ~l-l~~s~~s-~~lPPsSlqsFlR~dpn~saVvLad~~~~f~NKyYhSilDdaeNin~sy~~ 375 (596)
T KOG2657|consen 316 DL-LKPSGSS-DRLPPSSLQSFLRADPNVSAVVLADYGKEFENKYYHSILDDAENINDSYEK 375 (596)
T ss_pred ee-ecCCCCC-CCCChHHHHHHHhhCCCcceEEeccCCchhhhhhhhhhhcchhhccchhhh
Confidence 22 1222212 246666666666656889999888766 346899999999999976553
No 77
>PLN02693 IAA-amino acid hydrolase
Probab=97.74 E-value=0.00018 Score=82.46 Aligned_cols=88 Identities=23% Similarity=0.383 Sum_probs=67.6
Q ss_pred CceEEE-eccceEEEEEcCCCCCCCCCCeEEEeecccCcCCC-----------CC---CCCChhHHHHHHHHHHHHHHcC
Q 004095 2 GRTLIY-SDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAA-----------EG---AGDCSSCVAVMLELARAMSQWA 66 (774)
Q Consensus 2 g~~~~y-~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~s-----------pG---A~DngsGvAvmLElaR~L~~~~ 66 (774)
|....+ ...+||++++.++ +++.|++.+|+|+++.. +| |.|.-.++|++|.+++.|++.+
T Consensus 81 G~~~~~~~~~~~via~~g~~-----~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~ 155 (437)
T PLN02693 81 GIKYRYPVAITGIIGYIGTG-----EPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHR 155 (437)
T ss_pred CCeeEecCCCcEEEEEECCC-----CCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCc
Confidence 444332 2468999998322 34789999999999742 12 6677779999999999999865
Q ss_pred CCCCccEEEEEeCCcCCCCcchHHHHhhC
Q 004095 67 HGFKNAVIFLFNTGEEEGLNGAHSFVTQH 95 (774)
Q Consensus 67 ~~p~~~IiFlf~~aEE~gl~GS~~fv~~h 95 (774)
.+++.+|+|+|..+|| +..|++.++++.
T Consensus 156 ~~~~g~V~~if~pdEE-~~~Ga~~~i~~g 183 (437)
T PLN02693 156 HHLQGTVVLIFQPAEE-GLSGAKKMREEG 183 (437)
T ss_pred ccCCceEEEEEEEccc-chhhHHHHHHCC
Confidence 5667899999999999 557999998653
No 78
>PRK09864 putative peptidase; Provisional
Probab=97.74 E-value=0.0003 Score=78.31 Aligned_cols=146 Identities=20% Similarity=0.199 Sum_probs=99.2
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEeccCCC------------
Q 004095 45 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGI------------ 112 (774)
Q Consensus 45 A~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD~~G~------------ 112 (774)
|-||-.||++++|++|.+++ ++.++.|+|+.-||.|+.||+.-+.+.+ .++ +|.+|..-+
T Consensus 173 alDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvGlrGA~~aa~~i~--PDi--aIavDvt~~~d~p~~~~~~~~ 244 (356)
T PRK09864 173 ALDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVGLRGAQTSAEHIK--PDV--VIVLDTAVAGDVPGIDNIKYP 244 (356)
T ss_pred eCccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcchHHHHHHHhcCC--CCE--EEEEecccCCCCCCCcccccc
Confidence 88999999999999999964 6799999999999999999998764432 233 566664421
Q ss_pred ----CCCcc-eeecCC--ChHHHHHHHHHh---cCCCCcccchhccccCCCCCCCchHHHhhc-CCCeEEEEeeeCCCCC
Q 004095 113 ----GGKSG-LFQAGP--HPWAVENFAAAA---KYPSGQVTAQDLFASGAITSATDFQVYKEV-AGLSGLDFAYTDKSAV 181 (774)
Q Consensus 113 ----gg~~~-lfq~g~--~~~li~~~~~~a---~~P~~~~~~~d~f~~g~ips~TD~~~F~~~-~GIPgld~a~~~~~~~ 181 (774)
+|+.+ .+..++ ++.+.+...+.| .-|+-. +.... .+||-..+... .|+|...++. +-.+
T Consensus 245 ~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~----~~~~~----ggTDa~~i~~~~~Gvpt~~isi--P~RY 314 (356)
T PRK09864 245 LKLGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQF----STMKT----GATDGGRYNVMGGGRPVVALCL--PTRY 314 (356)
T ss_pred cccCCCCeEEEccCCccCCHHHHHHHHHHHHHcCCCceE----EEcCC----CCchHHHHHHhCCCCcEEEEee--ccCc
Confidence 23333 222233 566666655543 334321 11111 36777665442 6899998765 3456
Q ss_pred CCCcCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 004095 182 YHTKNDKLDLLKPGSLQHLGENMLAFLLQA 211 (774)
Q Consensus 182 YHT~~Dt~d~id~~slq~~g~~vl~~v~~l 211 (774)
-||+. +.++.+.++++.+.+.+++..+
T Consensus 315 ~Hs~~---e~~~~~D~e~~~~Ll~~~~~~l 341 (356)
T PRK09864 315 LHANS---GMISKADYDALLTLIRDFLTTL 341 (356)
T ss_pred CCCcc---eEeEHHHHHHHHHHHHHHHHhc
Confidence 69987 6777888889998888888765
No 79
>PRK08737 acetylornithine deacetylase; Provisional
Probab=97.70 E-value=0.00016 Score=80.66 Aligned_cols=83 Identities=22% Similarity=0.223 Sum_probs=63.4
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecccCcCC-------------------CCCCCCChhHHHHHHHHHHHHHHcCCCCC
Q 004095 10 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQWAHGFK 70 (774)
Q Consensus 10 ~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~-------------------spGA~DngsGvAvmLElaR~L~~~~~~p~ 70 (774)
..|++++. |+ +.|++++|+|+++. ++||.|+.+|+|+||.+++. ++
T Consensus 54 ~~nli~~~-g~-------~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~-------~~ 118 (364)
T PRK08737 54 AVSLYAVR-GT-------PKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA-------GD 118 (364)
T ss_pred ceEEEEEc-CC-------CeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc-------cC
Confidence 35898863 32 35999999999874 26999999999999999874 35
Q ss_pred ccEEEEEeCCcCCCC-cchHHHHhhCCCccCceEEEEeccC
Q 004095 71 NAVIFLFNTGEEEGL-NGAHSFVTQHPWSTTIRVAIDLEAM 110 (774)
Q Consensus 71 ~~IiFlf~~aEE~gl-~GS~~fv~~h~~~~~i~a~INLD~~ 110 (774)
.+|.|+++..||.|. .|++.++++.. +..++|..|..
T Consensus 119 ~~v~~~~~~dEE~g~~~g~~~~~~~~~---~~~~~iv~Ept 156 (364)
T PRK08737 119 GDAAFLFSSDEEANDPRCVAAFLARGI---PYEAVLVAEPT 156 (364)
T ss_pred CCEEEEEEcccccCchhhHHHHHHhCC---CCCEEEEcCCC
Confidence 689999999999987 69899987642 23445555543
No 80
>PLN02280 IAA-amino acid hydrolase
Probab=97.65 E-value=0.00033 Score=81.08 Aligned_cols=90 Identities=22% Similarity=0.321 Sum_probs=67.3
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecccCcCCC---------------CCCCCChhHHHHHHHHHHHHHHcCCCCCccE
Q 004095 9 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFAA---------------EGAGDCSSCVAVMLELARAMSQWAHGFKNAV 73 (774)
Q Consensus 9 ~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~s---------------pGA~DngsGvAvmLElaR~L~~~~~~p~~~I 73 (774)
..+|+++++ |+ .+++.|++++|+|+++.. .|.+.|+ ++|++|.++++|++.+.+++.+|
T Consensus 139 ~~~~vva~~-g~----~~~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~-~~A~~l~a~~~L~~~~~~~~g~V 212 (478)
T PLN02280 139 AKTGIRAWI-GT----GGPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDA-HVAMLLGAAKILKSREHLLKGTV 212 (478)
T ss_pred CCCEEEEEE-CC----CCCCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcH-HHHHHHHHHHHHHhccccCCceE
Confidence 467999998 53 133789999999999842 2333344 99999999999988666678899
Q ss_pred EEEEeCCcCCCCcchHHHHhhCCCccCceEEEE
Q 004095 74 IFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAID 106 (774)
Q Consensus 74 iFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~IN 106 (774)
+|+|..+||.| .|++..+++ ...+++.+++-
T Consensus 213 ~~if~pdEE~g-~Ga~~li~~-g~~~~~d~~~~ 243 (478)
T PLN02280 213 VLLFQPAEEAG-NGAKRMIGD-GALDDVEAIFA 243 (478)
T ss_pred EEEeccccccc-chHHHHHHC-CCCcCCCEEEE
Confidence 99999999997 499999854 33333444443
No 81
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00032 Score=77.97 Aligned_cols=110 Identities=18% Similarity=0.228 Sum_probs=87.3
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecccCcCC------------------------------------------CCCCC
Q 004095 9 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA------------------------------------------AEGAG 46 (774)
Q Consensus 9 ~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~------------------------------------------spGA~ 46 (774)
...||.+-++|+ ++++.|++.+|+|+|.. +.|+.
T Consensus 64 gR~nv~AlVrg~----~~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~ 139 (553)
T COG4187 64 GRRNVFALVRGG----TSKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGAL 139 (553)
T ss_pred ccceeEEEEecC----CCCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCch
Confidence 568999999995 57789999999999864 37999
Q ss_pred CChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCcchHHHHhhCCC-----ccCceEEEEeccCCCC---CCcce
Q 004095 47 DCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPW-----STTIRVAIDLEAMGIG---GKSGL 118 (774)
Q Consensus 47 DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~GS~~fv~~h~~-----~~~i~a~INLD~~G~g---g~~~l 118 (774)
|..||.|+-|..+..+++. ...+-+|.|+.+..||..-.|.+.-+...+. .-...++||+|.++-- .....
T Consensus 140 DMKsGlav~la~L~~fa~~-~~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~~dGd~~ry 218 (553)
T COG4187 140 DMKSGLAVHLACLEEFAAR-TDRQGNLLFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTSDQGDGDQGRY 218 (553)
T ss_pred hhhhhhHHHHHHHHHHhhC-CCCCCcEEEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEeccccccCCCCCccceE
Confidence 9999999999999999986 4567889999999999988888876644332 2357899999998753 22224
Q ss_pred eecCC
Q 004095 119 FQAGP 123 (774)
Q Consensus 119 fq~g~ 123 (774)
+.+|+
T Consensus 219 vYtGt 223 (553)
T COG4187 219 VYTGT 223 (553)
T ss_pred EEecc
Confidence 44555
No 82
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=96.60 E-value=0.11 Score=60.77 Aligned_cols=185 Identities=15% Similarity=0.158 Sum_probs=114.6
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecccCcCCCCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCcch
Q 004095 9 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGA 88 (774)
Q Consensus 9 ~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~GS 88 (774)
+.+||.+.++.. ..+..|.+++.+-+++.. | .-|..|++.+|.++|.+++.. --.++|+|++.+.| ..|.
T Consensus 2 ~G~nvy~i~rap--R~d~tEaivl~~~~~~~~---~-~~n~~~v~l~lal~~~~~~~~-~wsKDii~l~~~~~---~~g~ 71 (504)
T PF04114_consen 2 SGTNVYGILRAP--RGDGTEAIVLVVPWRDSD---G-EYNAGGVALALALARYFRRQS-YWSKDIIFLFTDDE---LAGM 71 (504)
T ss_pred CceEEEEEEecC--CCCCceeEEEEEecCCCC---c-ccchhhHHHHHHHHHHhhhch-hhhccEEEEecCCc---chHH
Confidence 568999999764 245678999999988764 3 455899999999999999853 24799999999865 4688
Q ss_pred HHHHhhC-C----------C---ccCceEEEEeccCCCCCCcc-eeecCC-----ChHHHHHHHHHhcC---CCCcc---
Q 004095 89 HSFVTQH-P----------W---STTIRVAIDLEAMGIGGKSG-LFQAGP-----HPWAVENFAAAAKY---PSGQV--- 142 (774)
Q Consensus 89 ~~fv~~h-~----------~---~~~i~a~INLD~~G~gg~~~-lfq~g~-----~~~li~~~~~~a~~---P~~~~--- 142 (774)
++|++++ . . +..+.+.||+|..+...... +...|. |..++....+.+.+ +-+..
T Consensus 72 ~awl~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~~~~v~i~~eG~NGqLPNLDL~N~~~~i~~~~gi~~~~~~~~ 151 (504)
T PF04114_consen 72 QAWLEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDSFSSVEIKYEGLNGQLPNLDLVNTVVRIAEKEGIPMGVSLHL 151 (504)
T ss_pred HHHHHHHhCCCCccccccCCCCCCcceeEEEEEEecCCCccEEEEEEecCCCCCCCchHHHHHHHHHHhcCCCccccccc
Confidence 9999753 1 1 23689999999887654443 222233 23444443332211 00000
Q ss_pred -----------------cchhccccCCCCCCCchHHHhhcCCCeEEEEeeeCCCCCCCCcCCCcCCCCHHHHHHHHHHHH
Q 004095 143 -----------------TAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENML 205 (774)
Q Consensus 143 -----------------~~~d~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl 205 (774)
+.....+.+.-....+|..|.+ -+|.++.+.-.+.. .+. .....+.|+.+-
T Consensus 152 ~~~~~~~~~~~~~~l~~l~~~~~~~a~g~p~g~H~~f~~-y~I~aiTl~~~~~~------~~~-----~~~~~~~gr~~E 219 (504)
T PF04114_consen 152 QPSDWHSNSDYESRLKTLLRGMLNQALGGPTGPHGAFLR-YRIDAITLRGVKST------GPG-----PHDFTAFGRILE 219 (504)
T ss_pred cccccccccchHHHHHHHHHHHHHhccCCCCCCchhhhh-cCccEEEEecccCC------CCC-----CcCHHHHHHHHH
Confidence 0000011111113567889998 68999988322111 110 112456788888
Q ss_pred HHHHHHhcCC
Q 004095 206 AFLLQAASST 215 (774)
Q Consensus 206 ~~v~~la~~~ 215 (774)
.++|.+-|-.
T Consensus 220 ~~~RslNNLl 229 (504)
T PF04114_consen 220 GIFRSLNNLL 229 (504)
T ss_pred HHHHHHHHHH
Confidence 8888887753
No 83
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=96.09 E-value=0.011 Score=65.70 Aligned_cols=70 Identities=26% Similarity=0.405 Sum_probs=62.7
Q ss_pred CCCCeEEEeecccCcCC---------------------CCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCC
Q 004095 25 AAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE 83 (774)
Q Consensus 25 ~~~~~ILl~AHyDS~~~---------------------spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~ 83 (774)
.+.+.+++..|||-.+. +.|++||.-.|+.-.++++++++.+..++.+|+|+|-+.||.
T Consensus 89 p~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~lpvnv~f~~EgmEEs 168 (473)
T KOG2276|consen 89 PSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGIDLPVNVVFVFEGMEES 168 (473)
T ss_pred CCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCccccceEEEEEEechhc
Confidence 45689999999998764 489999999999999999999999999999999999999999
Q ss_pred CCcchHHHHhh
Q 004095 84 GLNGAHSFVTQ 94 (774)
Q Consensus 84 gl~GS~~fv~~ 94 (774)
|..|-...+++
T Consensus 169 gS~~L~~l~~~ 179 (473)
T KOG2276|consen 169 GSEGLDELIEK 179 (473)
T ss_pred cCccHHHHHHH
Confidence 98888776654
No 84
>PRK02813 putative aminopeptidase 2; Provisional
Probab=89.73 E-value=1.4 Score=50.59 Aligned_cols=148 Identities=14% Similarity=0.104 Sum_probs=84.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCc---chHH-HHh----h------CC-----CccCceE
Q 004095 43 EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLN---GAHS-FVT----Q------HP-----WSTTIRV 103 (774)
Q Consensus 43 pGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~---GS~~-fv~----~------h~-----~~~~i~a 103 (774)
-++-||-+||.+++|+++...+ +.++++++++-||.|.. ||+. |++ + .. ..-+-..
T Consensus 230 s~~lDnr~~~~~~l~al~~~~~-----~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~i~~s~ 304 (428)
T PRK02813 230 SGRLDNLSSCHAGLEALLAAAS-----DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRALARSF 304 (428)
T ss_pred EecchhHHHHHHHHHHHHhcCC-----CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHhhCCCe
Confidence 5788999999999999987642 67999999999999998 8774 110 0 00 0112245
Q ss_pred EEEeccCCCC------------------CCcceee--cC--CChHHH---HHHHHHhcCCCCcccchhccccCCCCCCCc
Q 004095 104 AIDLEAMGIG------------------GKSGLFQ--AG--PHPWAV---ENFAAAAKYPSGQVTAQDLFASGAITSATD 158 (774)
Q Consensus 104 ~INLD~~G~g------------------g~~~lfq--~g--~~~~li---~~~~~~a~~P~~~~~~~d~f~~g~ips~TD 158 (774)
+|.+|.+-+. |+.+... .+ +++... +..++.+.-|+-.. + ..+-.+.+||
T Consensus 305 ~IS~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip~Q~~----v-~~~d~~gGst 379 (428)
T PRK02813 305 LISADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEKAGVPYQEF----V-NRSDMPCGST 379 (428)
T ss_pred EEEEeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHHcCCCEEEE----E-ecCCCCCccH
Confidence 6666654322 2221111 01 133333 33333334444221 1 1123456888
Q ss_pred hHHHhh-cCCCeEEEEeeeCCCCCCCCcCCCcCCCCHHHHHHHHHHHH
Q 004095 159 FQVYKE-VAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENML 205 (774)
Q Consensus 159 ~~~F~~-~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl 205 (774)
-.++.. ..|+|.+|+.. +--.-||+..+... ..+.++.+.+.
T Consensus 380 ig~i~~s~~Gi~tvdiGi--P~l~MHS~~E~~~~---~D~~~~~~l~~ 422 (428)
T PRK02813 380 IGPITAARLGIRTVDVGA--PMLAMHSARELAGV---KDHAYLIKALT 422 (428)
T ss_pred HHHHHHhCCCCcEEEeCh--hhcccccHHHHccH---HHHHHHHHHHH
Confidence 888765 47999999864 23356998865544 33444444443
No 85
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=88.78 E-value=2.8 Score=47.68 Aligned_cols=92 Identities=18% Similarity=0.313 Sum_probs=69.0
Q ss_pred ceEEEEEcCCCCCCCCCCeEEEeecccCcCC-----------CCC----CCCChhHHHHHHHHHHHHHHcCCCCCccEEE
Q 004095 11 NHIVLRIQPKYASEAAENAILVSSHIDTVFA-----------AEG----AGDCSSCVAVMLELARAMSQWAHGFKNAVIF 75 (774)
Q Consensus 11 ~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~-----------spG----A~DngsGvAvmLElaR~L~~~~~~p~~~IiF 75 (774)
+=|++.++|. .+++.|.+=|-||..|. -+| -+=| .=++++|-+|++|++....++-+|+|
T Consensus 57 TGvva~~~~g----~~g~tIalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD-~Hta~lLgaA~~L~~~~~~~~Gtv~~ 131 (392)
T COG1473 57 TGVVATLKGG----KPGPTIALRADMDALPIQEETGLPFASKNPGVMHACGHD-GHTAILLGAALALAEHKDNLPGTVRL 131 (392)
T ss_pred eEEEEEEcCC----CCCCEEEEEeecccCccccccCCCcccCCCCCcccCCch-HHHHHHHHHHHHHHhhhhhCCcEEEE
Confidence 6789999875 34559999999999873 234 1222 34788999999999866688999999
Q ss_pred EEeCCcCCCCcchHHHHhhCCCccC-ceEEEEecc
Q 004095 76 LFNTGEEEGLNGAHSFVTQHPWSTT-IRVAIDLEA 109 (774)
Q Consensus 76 lf~~aEE~gl~GS~~fv~~h~~~~~-i~a~INLD~ 109 (774)
+|-.|||.+- |++..+++ ...++ +.+++-+-.
T Consensus 132 ifQPAEE~~~-Ga~~mi~~-G~~~~~vD~v~g~H~ 164 (392)
T COG1473 132 IFQPAEEGGG-GAKAMIED-GVFDDFVDAVFGLHP 164 (392)
T ss_pred Eecccccccc-cHHHHHhc-CCccccccEEEEecC
Confidence 9999999877 99988854 33344 666666554
No 86
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=88.37 E-value=5.2 Score=46.55 Aligned_cols=158 Identities=10% Similarity=0.059 Sum_probs=90.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcC-CCCCccEEEEEeCCcCCCCcchHHHHhhC-CC-cc------Cc------------
Q 004095 43 EGAGDCSSCVAVMLELARAMSQWA-HGFKNAVIFLFNTGEEEGLNGAHSFVTQH-PW-ST------TI------------ 101 (774)
Q Consensus 43 pGA~DngsGvAvmLElaR~L~~~~-~~p~~~IiFlf~~aEE~gl~GS~~fv~~h-~~-~~------~i------------ 101 (774)
-++-||-.||.++||+++...... ..+....++++++-||.|..|+++-.... |. .+ ..
T Consensus 247 s~rlDnr~~~~~~l~al~~~~~~~~~~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~~~~~~~~~~ 326 (465)
T PTZ00371 247 SPRLDNLGSSFCAFKALTEAVESLGENSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNNSSDDSFAKL 326 (465)
T ss_pred EecchhHHHHHHHHHHHHhccccccCCCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhccccccchhHHHHH
Confidence 568899999999999998765310 12344555566999999998887643211 11 00 01
Q ss_pred ---eEEEEeccCCC------------------CCCcceee----cCCChHHHHHHHH---HhcCCCCcccchhccccCCC
Q 004095 102 ---RVAIDLEAMGI------------------GGKSGLFQ----AGPHPWAVENFAA---AAKYPSGQVTAQDLFASGAI 153 (774)
Q Consensus 102 ---~a~INLD~~G~------------------gg~~~lfq----~g~~~~li~~~~~---~a~~P~~~~~~~d~f~~g~i 153 (774)
..+|..|++-+ +|..+.+. ..+++.....+.+ .+.-|+-.. . ..+-.
T Consensus 327 ~~~S~~IS~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td~~~~a~i~~la~~~~Ip~Q~~----~-~~~d~ 401 (465)
T PTZ00371 327 MARSFLLSVDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATNGVTASLLKAIAKKANIPIQEF----V-VKNDS 401 (465)
T ss_pred HhccEEEEEecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccCHHHHHHHHHHHHHcCCCEEEE----E-ecCCC
Confidence 16778887533 12222121 0124444444433 333444221 1 11235
Q ss_pred CCCCchHHHhh-cCCCeEEEEeeeCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHH
Q 004095 154 TSATDFQVYKE-VAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQ 210 (774)
Q Consensus 154 ps~TD~~~F~~-~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~ 210 (774)
|.+||-.++.. ..|+|.+|+.. +--.-||+..+... ..+.++.+.+.++...
T Consensus 402 ~~GsTig~i~~s~~Gi~tvDiGi--P~l~MHS~rE~~~~---~D~~~~~~l~~af~~~ 454 (465)
T PTZ00371 402 PCGSTIGPILSSNLGIRTVDIGI--PQLAMHSIREMCGV---VDIYYLVKLIKAFFTN 454 (465)
T ss_pred CCcchHHHHHHhCCCCcEEEech--hhcccccHHHHccH---HHHHHHHHHHHHHHHh
Confidence 56788888765 47999999854 23456998865554 4455555666655553
No 87
>PRK02256 putative aminopeptidase 1; Provisional
Probab=88.15 E-value=4.5 Score=46.97 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=38.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCcchHHHH
Q 004095 43 EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFV 92 (774)
Q Consensus 43 pGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~GS~~fv 92 (774)
-++-||-.||.+++|+++... .++..+++++++-||.|+.|++.-.
T Consensus 256 s~rLDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVGs~ga~gA~ 301 (462)
T PRK02256 256 AYGQDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIGSEGNTGAQ 301 (462)
T ss_pred ccccccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccCCcchhhhc
Confidence 678899999999999998764 3567899999999999988776543
No 88
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=78.15 E-value=6.8 Score=46.07 Aligned_cols=92 Identities=21% Similarity=0.345 Sum_probs=68.1
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecccCcCCCCCCCCChhHHHHHHHHHHHHHHcCCCCCccEEEEEeCCcCCCCcchH
Q 004095 10 LNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAH 89 (774)
Q Consensus 10 ~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~spGA~DngsGvAvmLElaR~L~~~~~~p~~~IiFlf~~aEE~gl~GS~ 89 (774)
..||.+.+++. ..+..|.+++..-|+... |- |-.|++.++.+++.+++.. --.++|+|++.++ ...|-+
T Consensus 120 G~NvyGilRAP--RgdgtEsivl~vP~~~~~---~~--~~~~v~l~lsla~~f~r~~-yWsKDII~v~~d~---~~~g~~ 188 (617)
T KOG3566|consen 120 GENVYGILRAP--RGDGTESIVLVVPYGRSS---GS--NSASVALLLSLADYFSRWV-YWSKDIIFVFTDG---PALGLD 188 (617)
T ss_pred CceEEEEEecC--CCCCcceEEEEEecccCC---Cc--chhHHHHHHHHHHHhcCCe-eecccEEEEEeCC---ccccHH
Confidence 78999999874 235668899999998764 33 3788999999999998742 3478999999998 467788
Q ss_pred HHHhh-CC-C---------------ccCceEEEEeccCCC
Q 004095 90 SFVTQ-HP-W---------------STTIRVAIDLEAMGI 112 (774)
Q Consensus 90 ~fv~~-h~-~---------------~~~i~a~INLD~~G~ 112 (774)
+|++. |. . +....+.+++|....
T Consensus 189 AwLeaYhd~~s~~~~~~ep~~i~~ragal~aal~l~~se~ 228 (617)
T KOG3566|consen 189 AWLEAYHDILSLTGISVEPDEIQARAGALAAALVLEVSEK 228 (617)
T ss_pred HHHHHhhccccccccccccccccccccceeeEEEEEeccc
Confidence 88875 33 1 113467778877754
No 89
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=70.37 E-value=3.8 Score=46.92 Aligned_cols=59 Identities=17% Similarity=0.081 Sum_probs=46.8
Q ss_pred CChhHHHHHHHHHHHHHHcC-CCCCccEEEEEeCCcCCCCcchHHHHhhCCCccCceEEEEec
Q 004095 47 DCSSCVAVMLELARAMSQWA-HGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLE 108 (774)
Q Consensus 47 DngsGvAvmLElaR~L~~~~-~~p~~~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INLD 108 (774)
||-+|.+.+++.++.+++.. .-+..+|++.|.++||.|+.|++.+.-.. -.+....++|
T Consensus 144 D~kAGia~i~~al~~~~~~~~~i~h~~i~~g~s~~Ee~g~rg~~~~~~a~---f~a~~ay~iD 203 (414)
T COG2195 144 DDKAGIAEIMTALSVLREKHPEIPHGGIRGGFSPDEEIGGRGAANKDVAR---FLADFAYTLD 203 (414)
T ss_pred cchhHHHHHHHHHHHHhhcCccccccCeEEEecchHHhhhhhhhhccHHh---hhcceeEecC
Confidence 77799999999999999642 34677899999999999999999886332 2345566777
No 90
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=45.19 E-value=26 Score=39.41 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=26.4
Q ss_pred eEEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCC
Q 004095 4 TLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA 41 (774)
Q Consensus 4 ~~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~ 41 (774)
....++..||++..+|.. ..++.|++.||.|.++.
T Consensus 34 ~v~~D~~GNvia~~~g~~---~~~~~vml~AHmDeVGf 68 (350)
T TIGR03107 34 QVETDGLGGIFGIKESQV---ENAPRVMVAAHMDEVGF 68 (350)
T ss_pred EEEECCCCCEEEEecCCC---CCCCEEEEEecccEeCE
Confidence 456788999999987631 12348999999999863
No 91
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=41.60 E-value=53 Score=36.70 Aligned_cols=56 Identities=11% Similarity=0.201 Sum_probs=44.6
Q ss_pred CCCCchHHHhhcCCCeEEEEeeeCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q 004095 154 TSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 214 (774)
Q Consensus 154 ps~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~la~~ 214 (774)
...||...|.+ .|+|.+.+... +...-|++. |+++.+.+....+....++.++++.
T Consensus 338 ~g~tD~~~~~~-~gip~v~~Gpg-~~~~~H~~~---E~i~~~~l~~~~~i~~~~i~~l~~~ 393 (394)
T PRK08651 338 LGGTDARFFGA-KGIPTVVYGPG-ELELAHAPD---EYVEVKDVEKAAKVYEEVLKRLAKG 393 (394)
T ss_pred cCcccHHHHhh-CCCcEEEECCC-ChHhcCCCC---ceeEHHHHHHHHHHHHHHHHHhhcC
Confidence 35799999987 79999865332 223578876 8999999999999999999999874
No 92
>PF10190 Tmemb_170: Putative transmembrane protein 170; InterPro: IPR019334 This entry represents a group of putative transmembrane proteins conserved from nematodes to humans. The protein is only approximately 130 amino acids in length. The function is unknown.
Probab=40.75 E-value=2.6e+02 Score=26.13 Aligned_cols=49 Identities=8% Similarity=-0.027 Sum_probs=33.8
Q ss_pred HHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccee
Q 004095 269 ASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYV 318 (774)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~~~~~~~~ 318 (774)
..+.+-+.....++.....+.+.....+...+.++|.++.+- +.+|++.
T Consensus 32 ~~lRkhk~~~f~pi~~l~mg~l~p~~~G~itSa~IA~vY~a~-~~~M~~~ 80 (105)
T PF10190_consen 32 FTLRKHKFGRFIPIVILLMGVLGPLTGGSITSAAIAGVYRAA-GFRMSTW 80 (105)
T ss_pred HHHhhccchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCcccHH
Confidence 344443333455666666666777888888899999999875 5788775
No 93
>PRK07522 acetylornithine deacetylase; Provisional
Probab=38.04 E-value=86 Score=34.88 Aligned_cols=74 Identities=12% Similarity=0.099 Sum_probs=52.0
Q ss_pred ChHHHHHHHHHhcCCCCcccchhccccCCCCCCCchHHHhhcCCCeEEEEeeeCCCCCCCCcCCCcCCCCHHHHHHHHHH
Q 004095 124 HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGEN 203 (774)
Q Consensus 124 ~~~li~~~~~~a~~P~~~~~~~d~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~ 203 (774)
+..+++.+++....+... ..+..||-..|.. .|+|.+.+..- .....||+. |+++.+.+.+..+.
T Consensus 311 ~~~~v~~~~~~~~~~~~~----------~~~~~td~~~~~~-~gip~v~~Gpg-~~~~~H~~~---E~i~i~~l~~~~~~ 375 (385)
T PRK07522 311 DAAAARLVRALTGDNDLR----------KVAYGTEAGLFQR-AGIPTVVCGPG-SIEQAHKPD---EFVELAQLAACEAF 375 (385)
T ss_pred CcHHHHHHHHHhCCCCcc----------eEeeecchHHhcc-CCCCEEEECCC-ChhhCCCCC---ccccHHHHHHHHHH
Confidence 345777776654332210 1234689999986 89999865532 223689977 88999999999999
Q ss_pred HHHHHHHHh
Q 004095 204 MLAFLLQAA 212 (774)
Q Consensus 204 vl~~v~~la 212 (774)
+..++..+|
T Consensus 376 ~~~~~~~~~ 384 (385)
T PRK07522 376 LRRLLASLA 384 (385)
T ss_pred HHHHHHHHh
Confidence 999988876
No 94
>PRK08596 acetylornithine deacetylase; Validated
Probab=34.40 E-value=79 Score=35.99 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=45.9
Q ss_pred CCCCchHHHhhcCCCeEEEEeeeCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q 004095 154 TSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 214 (774)
Q Consensus 154 ps~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~la~~ 214 (774)
+..||...|.+ .|+|.+.+..-. ....|++. |+++.+.+.+..+.+..++.++...
T Consensus 363 ~g~tD~~~~~~-~gip~v~~Gpg~-~~~~H~~~---E~v~i~~~~~~~~~~~~~l~~~~~~ 418 (421)
T PRK08596 363 TTVTDGGWFAE-FGIPAVIYGPGT-LEEAHSVN---EKVEIEQLIEYTKVITAFIYEWCHT 418 (421)
T ss_pred eeecchhhhhh-cCCCEEEECCCc-ccccCCCC---ceEEHHHHHHHHHHHHHHHHHHhCC
Confidence 35789999988 899999766432 34679977 8999999999999999999998864
No 95
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=32.51 E-value=50 Score=26.41 Aligned_cols=36 Identities=14% Similarity=0.283 Sum_probs=22.9
Q ss_pred HHHhhCCchhhHHHHHHHHHHHHHHHHhCCCCCCCC
Q 004095 499 YVHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSE 534 (774)
Q Consensus 499 ~i~~~~~~~~i~~~l~~~~~~~~~~~~~~~~fPy~~ 534 (774)
...+++|.|.-+.++.++.++.++.+..+...||++
T Consensus 8 ~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~~~ 43 (56)
T PF12911_consen 8 AWRRFRRNKLAVIGLIILLILVLLAIFAPFISPYDP 43 (56)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 346677767666666565555555556667788854
No 96
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=32.06 E-value=82 Score=35.42 Aligned_cols=56 Identities=21% Similarity=0.301 Sum_probs=44.4
Q ss_pred CCCCchHHHhhcCCCeEEEEeeeCC-CCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 004095 154 TSATDFQVYKEVAGLSGLDFAYTDK-SAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAAS 213 (774)
Q Consensus 154 ps~TD~~~F~~~~GIPgld~a~~~~-~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~la~ 213 (774)
+..||...|++ .|+|.+.+.-... ....|++. |+++.+.+.+..+....++.++++
T Consensus 343 ~g~tDa~~~~~-~gip~v~fgp~~~~~~~aH~~d---E~i~i~~l~~~~~~~~~~l~~~~~ 399 (400)
T TIGR01880 343 PGSTDSRYIRA-AGVPALGFSPMNNTPVLLHDHN---EFLNEAVFLRGIEIYQTLISALAS 399 (400)
T ss_pred cCcchHHHHHh-CCCCeEEECCccCCcccccCCC---CceEHHHHHHHHHHHHHHHHHhhc
Confidence 35799999987 7999986544322 23589987 689999999999999999998874
No 97
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=31.51 E-value=5.7e+02 Score=29.61 Aligned_cols=32 Identities=19% Similarity=0.090 Sum_probs=21.6
Q ss_pred HHHHHHhhhHhHHHHHHHHHHHHHHHHhhccc
Q 004095 433 LATLLLGLAVPVLVSAGNFIRLANVIVAIVVR 464 (774)
Q Consensus 433 ~~~~~~~~~~P~~~~~~~~~~~~~~~~p~~gR 464 (774)
...+.-..+.|+++...+....-.++.|.++|
T Consensus 187 ~~~l~~~ll~P~~ig~ai~~~vslliFP~sss 218 (459)
T PF10337_consen 187 AYTLGKTLLKPFLIGIAIALVVSLLIFPESSS 218 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeecCCCch
Confidence 34445556678888777777776777777666
No 98
>PRK07079 hypothetical protein; Provisional
Probab=30.81 E-value=1.3e+02 Score=34.71 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=43.2
Q ss_pred CCchHHHhhcCCCeEEEEeeeCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q 004095 156 ATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 214 (774)
Q Consensus 156 ~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~la~~ 214 (774)
.+|-..|.+..|+|.+.+.....+...|++. |+++.+.+....+.+..++..+++.
T Consensus 402 ~~d~~~~~~~~giP~v~~g~~~~~~~~H~~d---E~v~l~~l~~~~~~~~~~~~~~~~~ 457 (469)
T PRK07079 402 SLPNDVFADILGLPTLWVPHSYPACSQHAPN---EHLLASVAREGLQIMAGLFWDLGEQ 457 (469)
T ss_pred chhHHHHHHHhCCCEEEecCCCCCccCcCCC---CCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 4577778754799999543222233469977 8999999999999999999999874
No 99
>PRK13381 peptidase T; Provisional
Probab=30.12 E-value=75 Score=35.89 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=43.6
Q ss_pred CCCCCchHHHhhcCCCeEEEEeeeCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHh
Q 004095 153 ITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAA 212 (774)
Q Consensus 153 ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~la 212 (774)
.+..||...|.+ .|+|.+.+..-. ..-|++. |+++.+.+.+..+.+..++++++
T Consensus 350 ~~g~tDa~~~~~-~giP~v~~GpG~--~~aH~~d---E~v~i~~l~~~~~v~~~~~~~~~ 403 (404)
T PRK13381 350 MRGGTDGAALSA-KGLPTPNLFTGA--HNFHSRF---EFLPVSSFVKSYEVTITICLLAA 403 (404)
T ss_pred CCccchHHHHhc-CCCCeEEECccc--cCCcCcc---eeEEHHHHHHHHHHHHHHHHHhc
Confidence 346799999987 799999865332 3368876 88999999999999999998876
No 100
>PRK09864 putative peptidase; Provisional
Probab=28.85 E-value=65 Score=36.32 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=24.5
Q ss_pred eEEEeccceEEEEEcCCCCCCCCCCeEEEeecccCcCC
Q 004095 4 TLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA 41 (774)
Q Consensus 4 ~~~y~~~~NVI~~i~g~~~~~~~~~~ILl~AHyDS~~~ 41 (774)
....++..|+|+.. |+ +++.|++.||.|.++.
T Consensus 36 ev~~D~~GNli~~~-g~-----~~~kvml~AHmDevG~ 67 (356)
T PRK09864 36 EITFDGLGSFVARK-GN-----KGPKVAVVGHMDEVGF 67 (356)
T ss_pred EEEECCCCCEEEEe-CC-----CCcEEEEEecccccCE
Confidence 35668899999986 53 1237999999999863
No 101
>PRK08652 acetylornithine deacetylase; Provisional
Probab=28.43 E-value=1e+02 Score=33.72 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=44.3
Q ss_pred CCCCCchHHHhhcCCCeEEEEeeeCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 004095 153 ITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAAS 213 (774)
Q Consensus 153 ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~la~ 213 (774)
.++.||-+.|.+ .|+|.+.+... +....|++. |+++.+.+.+..+.+..++..+..
T Consensus 291 ~~g~tDa~~~~~-~gip~v~~Gpg-~~~~~H~~n---E~i~i~~l~~~~~~l~~~~~~~~~ 346 (347)
T PRK08652 291 MRSWTDAINFRY-NGTKTVVWGPG-ELDLCHTKF---ERIDVREVEKAKEFLKALNEILLE 346 (347)
T ss_pred CCccchhHHHHH-CCCCEEEECCC-chhhcCCCC---ceeeHHHHHHHHHHHHHHHHHHhc
Confidence 346799999987 79999876532 224679987 889999999999999999887754
No 102
>PRK07338 hypothetical protein; Provisional
Probab=28.25 E-value=93 Score=34.96 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=44.5
Q ss_pred CCCCchHHHhhcCCCeEEE-EeeeCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q 004095 154 TSATDFQVYKEVAGLSGLD-FAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 214 (774)
Q Consensus 154 ps~TD~~~F~~~~GIPgld-~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~la~~ 214 (774)
+..+|-..|.. .|+|.++ +.. .+...|++. |+++.+.+.+..+.+..++..++..
T Consensus 345 ~g~tDa~~~~~-~giP~v~~~Gp--g~~~~H~~~---E~v~i~~l~~~~~~~~~~l~~~~~~ 400 (402)
T PRK07338 345 GGVCDGNNLAA-AGLPVVDTLGV--RGGNIHSED---EFVILDSLVERAQLSALILMRLAQG 400 (402)
T ss_pred CccchHHHHhh-cCCCeEeccCC--CCCCCCCcc---ceEehhhHHHHHHHHHHHHHHHhcC
Confidence 45799999987 7999996 333 234569987 8999999999999999999998764
No 103
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=24.82 E-value=1.3e+02 Score=33.45 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=41.2
Q ss_pred CCCCchHHHhhcCCCeEEEEeeeCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 004095 154 TSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQA 211 (774)
Q Consensus 154 ps~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~l 211 (774)
+..||.+.|.. .|+|++.+.-. ....|++. |+++.+.+.+..+....++.+|
T Consensus 319 ~g~~d~~~~~~-~g~p~~~~Gp~--~~~~H~~~---E~i~i~~l~~~~~~~~~~l~~~ 370 (370)
T TIGR01246 319 GGTSDGRFIAL-MGAEVVEFGPV--NATIHKVN---ECVSIEDLEKLSDVYQDLLENL 370 (370)
T ss_pred CCCchHHHHHH-cCCCEEEecCC--cccCCCCC---ceeEHHHHHHHHHHHHHHHHhC
Confidence 45689999987 79999876443 34579977 8889999999999998888764
No 104
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=23.29 E-value=1e+02 Score=34.97 Aligned_cols=57 Identities=9% Similarity=0.056 Sum_probs=45.7
Q ss_pred CCCCchHHHhhcCCCeEEEEeeeCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q 004095 154 TSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 214 (774)
Q Consensus 154 ps~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~la~~ 214 (774)
+..||...|+. .|+|.+-+.+-..+..-|++. |+++.+.+....+.+..++.++++.
T Consensus 353 ~g~tDa~~~~~-~gip~v~~g~G~~~~~aH~~n---E~i~i~~~~~~~~~~~~~~~~~~~~ 409 (410)
T PRK06133 353 GGGTDAAFAAG-SGKAAVLEGFGLVGFGAHSND---EYIELNSIVPRLYLLTRMIMELSRD 409 (410)
T ss_pred CCCchHHHHHh-cCCCceEecccCCCCCCCCCC---cEEEcccHHHHHHHHHHHHHHhhcC
Confidence 46799999988 799988655433345579888 8899999999999999999998863
No 105
>PRK06837 acetylornithine deacetylase; Provisional
Probab=22.82 E-value=1.6e+02 Score=33.58 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=43.9
Q ss_pred CCCCchHHHhhcCCCeEEEEeeeCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 004095 154 TSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAAS 213 (774)
Q Consensus 154 ps~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~la~ 213 (774)
+..||...|....|+|.+.+... ....||+. |+++.+.+....+....++..++.
T Consensus 369 ~g~tDa~~~~~~~gip~v~~Gp~--~~~~H~~n---E~i~i~~l~~~~~~~~~~l~~~~~ 423 (427)
T PRK06837 369 TAYTDTRFYGLYYGIPALCYGPS--GEGIHGFD---ERVDLESVRKVTKTIALFVAEWCG 423 (427)
T ss_pred eeccchHHHhccCCCCEEEECCC--CCccCCCC---ceEEHHHHHHHHHHHHHHHHHHhC
Confidence 35799988875468999876543 34589986 889999999999999999988874
No 106
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=21.90 E-value=3.5e+02 Score=22.78 Aligned_cols=27 Identities=19% Similarity=0.059 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhhCCchhhHHHH
Q 004095 487 VVLCLTLVYLLSYVHLSGAKRPIAIAS 513 (774)
Q Consensus 487 ~~~~l~~~~l~P~i~~~~~~~~i~~~l 513 (774)
.+..+....+-|+..+.++|..-+...
T Consensus 15 ~~lG~~~~~~~pl~~llk~p~tai~~i 41 (61)
T PF05421_consen 15 VMLGLFLIIFEPLKPLLKNPVTAIALI 41 (61)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 344455678889999999877655444
No 107
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=21.57 E-value=1.5e+03 Score=27.58 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004095 322 WLAVGLFAAPAFLGALTGQHLGYIILK 348 (774)
Q Consensus 322 ~l~i~ly~~p~~~g~~~~~~~~~~~~~ 348 (774)
.+++|+|+...++-..+|.+.+|..+.
T Consensus 148 ml~~giy~~~~l~~~~ip~~~gff~l~ 174 (952)
T TIGR02921 148 MLLFGIYAAALLAFFAIPAAAGFFELL 174 (952)
T ss_pred HHHHHHHHHHHHHHHhhhHHhHHHHHH
Confidence 367788887777777777777665543
No 108
>PRK05469 peptidase T; Provisional
Probab=21.53 E-value=1.6e+02 Score=33.24 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=43.3
Q ss_pred CCCCchHHHhhcCCCeEEEEeeeCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 004095 154 TSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAAS 213 (774)
Q Consensus 154 ps~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~la~ 213 (774)
+..+|...|.. .|+|.+.+.. +....||+. |.++.+.+....+.+..++..++.
T Consensus 353 ~ggtD~~~~~~-~giP~v~~gp--G~~~~H~~~---E~v~i~~l~~~~~~~~~~~~~~~~ 406 (408)
T PRK05469 353 RGGTDGSQLSF-MGLPCPNIFT--GGHNFHGKF---EFVSLESMEKAVEVIVEIAELTAE 406 (408)
T ss_pred CCcccHHHHhh-CCCceEEECc--CcccCcCcc---eeeEHHHHHHHHHHHHHHHHHHhc
Confidence 46899999987 7999987543 233579876 778899999999999999988875
No 109
>PRK08554 peptidase; Reviewed
Probab=21.39 E-value=1.4e+02 Score=34.47 Aligned_cols=54 Identities=20% Similarity=0.285 Sum_probs=44.1
Q ss_pred CCCCCchHHHhhcCCCeEEEEeeeCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHh
Q 004095 153 ITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAA 212 (774)
Q Consensus 153 ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~la 212 (774)
.+..||-+.|.. .|+|.+++.-. +..-|+.. |+++.+++....+....++.+|.
T Consensus 384 ~~GgtDa~~~~~-~Gip~v~~Gp~--~~~~H~~~---E~v~i~~l~~~~~i~~~~i~~l~ 437 (438)
T PRK08554 384 GPGASDSRYFTP-YGVKAIDFGPK--GGNIHGPN---EYVEIDSLKKMPEVYKRIALRLL 437 (438)
T ss_pred cCCchHHHHHHh-cCCCceEECCC--CCCCCCCc---ceEEHHHHHHHHHHHHHHHHHHh
Confidence 457899999987 79999997543 23568876 89999999999999999988764
No 110
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=21.35 E-value=1.7e+02 Score=32.36 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=42.4
Q ss_pred CCCchHHHhhcCCCeEEEEeeeCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHh
Q 004095 155 SATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAA 212 (774)
Q Consensus 155 s~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~la 212 (774)
..||.+.|.+ .|+|.+.+.-. +...|++. |+++.+.+....+....++.++.
T Consensus 323 g~tda~~~~~-~g~p~v~~Gp~--~~~~H~~~---E~i~~~~l~~~~~~~~~~~~~~~ 374 (375)
T PRK13009 323 GTSDARFIAD-YGAQVVEFGPV--NATIHKVN---ECVSVADLEKLTRIYERILERLL 374 (375)
T ss_pred CCccHHHHHH-cCCCeEEeccC--cccCCCCC---CcEEHHHHHHHHHHHHHHHHHHh
Confidence 4689988988 79999976543 34579988 89999999999999998888764
No 111
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=21.01 E-value=32 Score=37.27 Aligned_cols=122 Identities=19% Similarity=0.200 Sum_probs=0.0
Q ss_pred ccCceEEEEechhHHHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHH---------------------HHHHH
Q 004095 239 ILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVM-GGYPAAVSLALTCLSAIL---------------------MLVFS 296 (774)
Q Consensus 239 ~~g~~~v~y~~~~~~~l~~~v~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------------------~~~~~ 296 (774)
++-||||..|.-+.......-.++.++++.+-+.+ -+++.++.+.+-|+..+. -+++.
T Consensus 36 il~w~~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~ 115 (381)
T PF05297_consen 36 ILVWFFIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLC 115 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhccCCCCCcceeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHH
Q 004095 297 VSFAVVIAFILPQISSSPVPYVANPWLAVGLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAER 376 (774)
Q Consensus 297 ~~~~~~va~~~~~~~~~~~~~~s~~~l~i~ly~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (774)
+.+++.|=+.+-..-...-||. ..+++.|-+|.+++-++++..+ ...
T Consensus 116 ~lLaL~vW~Ym~lLr~~GAs~W--tiLaFcLAF~LaivlLIIAv~L-------------------------------~qa 162 (381)
T PF05297_consen 116 CLLALGVWFYMWLLRELGASFW--TILAFCLAFLLAIVLLIIAVLL-------------------------------HQA 162 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHHHHH-------------------------------HHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004095 377 WLFKAGFLQWLILLALG 393 (774)
Q Consensus 377 ~~~~~~~~~~~~l~~~~ 393 (774)
|+-...=++|.++.+.+
T Consensus 163 WfT~L~dL~WL~LFlai 179 (381)
T PF05297_consen 163 WFTILVDLYWLLLFLAI 179 (381)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
No 112
>PRK06446 hypothetical protein; Provisional
Probab=20.90 E-value=2.2e+02 Score=32.60 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=41.0
Q ss_pred CCchHHHhhcCCCeEEEEee--eCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 004095 156 ATDFQVYKEVAGLSGLDFAY--TDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAAS 213 (774)
Q Consensus 156 ~TD~~~F~~~~GIPgld~a~--~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~la~ 213 (774)
.+|-..|.+..|+|.+...+ ..++..-|+.. |+++.+.+.+..+.+..++++++.
T Consensus 379 ~~d~~~~~~~~gip~v~~~~g~g~~~~~~H~~d---E~i~i~~l~~~~~~~~~~~~~~~~ 435 (436)
T PRK06446 379 TQPMGLFVYKLGIRDIVSAIGVGGYYSNAHAPN---ENIRIDDYYKAIKHTEEFLKLYST 435 (436)
T ss_pred cchHHHHHHHhCCCcceeecccCCCCcCCcCCC---CCcCHHHHHHHHHHHHHHHHHhcC
Confidence 34667776547999875332 23345679976 899999999999999999988764
No 113
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=20.80 E-value=1.1e+02 Score=34.70 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=43.8
Q ss_pred CCCCCchHHHhhcCCCeEEEEeeeCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHh
Q 004095 153 ITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAA 212 (774)
Q Consensus 153 ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~~v~~la 212 (774)
.+..||...|.. .|+|.+.+.. + +..-||.. |+++.+.|....+.+..+++..+
T Consensus 354 ~~ggtDa~~~~~-~Gip~~~~G~-G-~~~aHt~d---E~v~i~~l~~~~~~~~~li~~~~ 407 (410)
T TIGR01882 354 IRGGTDGSQLSY-MGLPTPNIFA-G-GENMHGRF---EYISVDNMVKAVDVIVEIAKLNE 407 (410)
T ss_pred cceechHHHHHh-CCCCCCeEcC-C-cccCcCCc---eEEEHHHHHHHHHHHHHHHHHHh
Confidence 346899999987 7999988754 2 34579977 78999999999999999988766
Done!