Your job contains 1 sequence.
>004098
MSGSGTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVRNSKGKSVSWSS
KCVTENGKTLGKRTLSSANSLGQMRQASLLDHFQSGNRQKRGKRNVGDDVSVSGSVVSPS
IVEEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKE
ALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTA
CFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK
WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKF
VLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDT
SSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSP
HRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAA
AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA
GRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILV
EYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIK
KQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDDRVCS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004098
(774 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2180255 - symbol:RECQSIM "RECQ helicase SIM" s... 2141 9.8e-222 1
TIGR_CMR|GSU_0898 - symbol:GSU_0898 "ATP-dependent DNA he... 380 2.8e-62 2
UNIPROTKB|P15043 - symbol:recQ species:83333 "Escherichia... 381 6.3e-62 2
UNIPROTKB|F1NAR0 - symbol:F1NAR0 "Uncharacterized protein... 420 1.3e-61 3
TIGR_CMR|SO_4241 - symbol:SO_4241 "ATP-dependent DNA heli... 381 2.0e-61 2
UNIPROTKB|F1PZR2 - symbol:WRN "Uncharacterized protein" s... 429 2.3e-61 3
UNIPROTKB|F1PZR3 - symbol:WRN "Uncharacterized protein" s... 429 4.1e-61 3
UNIPROTKB|F1PUF8 - symbol:WRN "Uncharacterized protein" s... 429 5.2e-61 3
UNIPROTKB|Q9KVF0 - symbol:VC_0196 "ATP-dependent DNA heli... 375 6.9e-61 2
TIGR_CMR|VC_0196 - symbol:VC_0196 "ATP-dependent DNA heli... 375 6.9e-61 2
UNIPROTKB|O93530 - symbol:wrn "Werner syndrome ATP-depend... 411 1.8e-60 2
UNIPROTKB|Q14191 - symbol:WRN "Werner syndrome ATP-depend... 417 8.5e-60 3
FB|FBgn0002906 - symbol:Blm "Bloom syndrome helicase orth... 383 1.7e-59 2
TIGR_CMR|CBU_0472 - symbol:CBU_0472 "ATP-dependent DNA he... 390 1.9e-59 2
TAIR|locus:2197555 - symbol:RECQL2 "RECQ helicase L2" spe... 408 3.0e-59 2
RGD|1311071 - symbol:Recql "RecQ protein-like (DNA helica... 357 3.9e-59 2
UNIPROTKB|Q6AYJ1 - symbol:Recql "ATP-dependent DNA helica... 357 3.9e-59 2
TAIR|locus:2127998 - symbol:RecQl3 "AT4G35740" species:37... 408 4.3e-59 2
WB|WBGene00019334 - symbol:K02F3.12 species:6239 "Caenorh... 352 8.2e-59 2
DICTYBASE|DDB_G0292130 - symbol:blm "Bloom syndrome prote... 369 1.1e-58 2
MGI|MGI:109635 - symbol:Wrn "Werner syndrome homolog (hum... 412 2.6e-58 3
UNIPROTKB|P46063 - symbol:RECQL "ATP-dependent DNA helica... 354 4.2e-58 2
UNIPROTKB|E1BEE6 - symbol:WRN "Uncharacterized protein" s... 409 4.6e-58 3
MGI|MGI:103021 - symbol:Recql "RecQ protein-like" species... 358 4.7e-58 2
UNIPROTKB|I3LC91 - symbol:WRN "Uncharacterized protein" s... 409 5.1e-58 3
UNIPROTKB|F1PNP1 - symbol:RECQL "Uncharacterized protein"... 359 5.7e-58 2
GENEDB_PFALCIPARUM|PF14_0278 - symbol:PF14_0278 "ATP-depe... 420 6.1e-58 3
UNIPROTKB|Q8ILG5 - symbol:PF14_0278 "ATP-dependent DNA he... 420 6.1e-58 3
UNIPROTKB|F1RX70 - symbol:WRN "Uncharacterized protein" s... 407 6.4e-58 3
UNIPROTKB|F1SR01 - symbol:RECQL "Uncharacterized protein"... 359 9.6e-58 2
WB|WBGene00006944 - symbol:wrn-1 species:6239 "Caenorhabd... 370 1.4e-57 2
TAIR|locus:2074429 - symbol:RECQI1 "RECQ helicase l1" spe... 377 4.8e-57 2
UNIPROTKB|O34748 - symbol:recQ "Probable ATP-dependent DN... 382 7.3e-57 2
UNIPROTKB|A0JN36 - symbol:RECQL "Uncharacterized protein"... 364 8.0e-57 3
POMBASE|SPAC2G11.12 - symbol:rqh1 "RecQ type DNA helicase... 358 8.4e-57 3
UNIPROTKB|F1NPI7 - symbol:RECQL "Uncharacterized protein"... 372 8.6e-57 2
ASPGD|ASPL0000045206 - symbol:musN species:162425 "Emeric... 343 1.8e-56 2
UNIPROTKB|Q9DEY9 - symbol:blm "Bloom syndrome protein hom... 401 7.7e-56 2
UNIPROTKB|E1BQ04 - symbol:BLM "Uncharacterized protein" s... 390 2.8e-55 2
WB|WBGene00001865 - symbol:him-6 species:6239 "Caenorhabd... 365 4.0e-55 2
RGD|1564788 - symbol:Wrn "Werner syndrome, RecQ helicase-... 386 4.0e-55 3
ZFIN|ZDB-GENE-070702-2 - symbol:wrn "Werner syndrome" spe... 413 5.1e-55 2
UNIPROTKB|F1ND40 - symbol:BLM "Bloom syndrome protein hom... 379 8.8e-55 2
UNIPROTKB|F1P3V1 - symbol:BLM "Bloom syndrome protein hom... 379 1.7e-54 2
MGI|MGI:1328362 - symbol:Blm "Bloom syndrome, RecQ helica... 382 1.7e-54 3
UNIPROTKB|J3KTQ2 - symbol:RECQL5 "ATP-dependent DNA helic... 358 1.9e-54 2
UNIPROTKB|Q9I920 - symbol:BLM "Bloom syndrome protein hom... 379 3.0e-54 2
TIGR_CMR|BA_2818 - symbol:BA_2818 "ATP-dependent DNA heli... 366 4.3e-54 2
CGD|CAL0004296 - symbol:SGS1 species:5476 "Candida albica... 349 6.8e-54 2
UNIPROTKB|Q5A5R4 - symbol:SGS1 "Putative uncharacterized ... 349 6.8e-54 2
TAIR|locus:2197394 - symbol:RECQ4A species:3702 "Arabidop... 395 7.1e-54 3
UNIPROTKB|H0YNU5 - symbol:BLM "Bloom syndrome protein" sp... 380 1.5e-53 2
UNIPROTKB|I3LFW3 - symbol:RECQL5 "Uncharacterized protein... 357 1.7e-53 2
UNIPROTKB|P54132 - symbol:BLM "Bloom syndrome protein" sp... 380 2.0e-53 2
UNIPROTKB|E2RS76 - symbol:BLM "Uncharacterized protein" s... 377 3.3e-53 2
UNIPROTKB|J9PB86 - symbol:BLM "Uncharacterized protein" s... 377 3.4e-53 2
DICTYBASE|DDB_G0268512 - symbol:wrn "Werner syndrome prot... 394 8.0e-53 3
SGD|S000004802 - symbol:SGS1 "Nucleolar DNA helicase of t... 338 2.1e-52 2
ZFIN|ZDB-GENE-070702-5 - symbol:blm "Bloom syndrome" spec... 372 3.3e-52 2
RGD|1308810 - symbol:Blm "Bloom syndrome, RecQ helicase-l... 385 1.8e-51 2
DICTYBASE|DDB_G0272384 - symbol:DDB_G0272384 "Bloom syndr... 348 2.6e-51 4
ZFIN|ZDB-GENE-050809-134 - symbol:recql "RecQ protein-lik... 320 5.3e-50 2
UNIPROTKB|F1NT69 - symbol:F1NT69 "Uncharacterized protein... 329 1.5e-49 2
UNIPROTKB|O94762 - symbol:RECQL5 "ATP-dependent DNA helic... 358 4.4e-49 2
UNIPROTKB|E1BKM5 - symbol:RECQL5 "Uncharacterized protein... 349 6.4e-49 2
TIGR_CMR|SPO_0107 - symbol:SPO_0107 "ATP-dependent DNA he... 344 3.5e-48 2
UNIPROTKB|F1PAG8 - symbol:RECQL5 "Uncharacterized protein... 345 6.1e-48 2
FB|FBgn0027375 - symbol:RecQ5 "homolog of RecQ" species:7... 365 3.1e-47 3
RGD|1310823 - symbol:Recql5 "RecQ protein-like 5" species... 331 1.7e-46 2
UNIPROTKB|Q8EEK1 - symbol:SO_2380 "ATP-dependent DNA heli... 281 1.1e-45 3
TIGR_CMR|SO_2380 - symbol:SO_2380 "RecQ domain protein" s... 281 1.1e-45 3
UNIPROTKB|F1NWK5 - symbol:F1NWK5 "Uncharacterized protein... 329 1.4e-45 2
TIGR_CMR|BA_1505 - symbol:BA_1505 "ATP-dependent DNA heli... 333 3.7e-45 3
UNIPROTKB|Q47WD5 - symbol:CPS_4237 "RecQ domain protein" ... 274 2.0e-42 2
TIGR_CMR|CPS_4237 - symbol:CPS_4237 "RecQ domain protein"... 274 2.0e-42 2
TAIR|locus:2029799 - symbol:AT1G27880 species:3702 "Arabi... 298 3.3e-42 2
WB|WBGene00004322 - symbol:rcq-5 species:6239 "Caenorhabd... 269 1.7e-40 3
ASPGD|ASPL0000072255 - symbol:recQ species:162425 "Emeric... 312 1.4e-39 4
FB|FBgn0040290 - symbol:RecQ4 "RecQ4" species:7227 "Droso... 300 9.3e-38 3
UNIPROTKB|Q6P4G0 - symbol:RECQL5 "ATP-dependent DNA helic... 253 1.8e-37 2
UNIPROTKB|Q4JNX8 - symbol:RTS "RECQL4-helicase-like prote... 270 7.5e-36 2
UNIPROTKB|Q33DM4 - symbol:recql4 "RecQ4 protein" species:... 270 7.6e-36 2
RGD|1307732 - symbol:Recql4 "RecQ protein-like 4" species... 266 4.3e-34 2
MGI|MGI:1931028 - symbol:Recql4 "RecQ protein-like 4" spe... 256 8.6e-34 4
UNIPROTKB|O94761 - symbol:RECQL4 "ATP-dependent DNA helic... 248 4.5e-33 2
UNIPROTKB|F1RSP7 - symbol:RECQL4 "Uncharacterized protein... 247 4.0e-32 2
UNIPROTKB|K7GSZ9 - symbol:RECQL4 "Uncharacterized protein... 247 4.0e-32 2
UNIPROTKB|F1RV44 - symbol:RECQL4 "Uncharacterized protein... 247 4.2e-32 2
UNIPROTKB|F1RMJ3 - symbol:BLM "Uncharacterized protein" s... 365 5.0e-31 1
UNIPROTKB|A5D786 - symbol:RECQL4 "RECQL4 protein" species... 223 3.9e-30 2
UNIPROTKB|H9KZS5 - symbol:H9KZS5 "Uncharacterized protein... 220 8.0e-26 2
UNIPROTKB|F1RMJ2 - symbol:BLM "Uncharacterized protein" s... 248 7.9e-18 1
UNIPROTKB|Q47ZX4 - symbol:CPS_2945 "Putative DEAD/DEAH bo... 180 1.2e-17 2
TIGR_CMR|CPS_2945 - symbol:CPS_2945 "putative DEAD/DEAH b... 180 1.2e-17 2
UNIPROTKB|J3KSL7 - symbol:RECQL5 "ATP-dependent DNA helic... 224 1.7e-17 1
UNIPROTKB|E2RDN3 - symbol:E2RDN3 "Uncharacterized protein... 252 7.0e-16 3
POMBASE|SPBCPT2R1.08c - symbol:tlh2 "RecQ type DNA helica... 163 1.5e-12 2
ASPGD|ASPL0000073665 - symbol:AN5092 species:162425 "Emer... 156 1.6e-12 2
POMBASE|SPAC212.11 - symbol:tlh1 "RecQ type DNA helicase"... 163 1.8e-12 2
UNIPROTKB|F8WD97 - symbol:RECQL "ATP-dependent DNA helica... 177 1.9e-12 1
WARNING: Descriptions of 335 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2180255 [details] [associations]
symbol:RECQSIM "RECQ helicase SIM" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006281 "DNA repair" evidence=IDA] [GO:0043138 "3'-5' DNA
helicase activity" evidence=IDA] [GO:0006270 "DNA replication
initiation" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR009060 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:AC007478
InterPro:IPR015940 PROSITE:PS50030 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 eggNOG:COG0514
TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0043138 EMBL:AC069556
HSSP:P15043 EMBL:AJ404475 EMBL:AY059754 EMBL:AY133823
IPI:IPI00537732 RefSeq:NP_568499.1 UniGene:At.10179
ProteinModelPortal:Q9FT69 SMR:Q9FT69 IntAct:Q9FT69
EnsemblPlants:AT5G27680.1 GeneID:832830 KEGG:ath:AT5G27680
TAIR:At5g27680 HOGENOM:HOG000084012 InParanoid:Q9FT69 KO:K10900
OMA:CRAKILV PhylomeDB:Q9FT69 ProtClustDB:CLSN2689878
Genevestigator:Q9FT69 Uniprot:Q9FT69
Length = 858
Score = 2141 (758.7 bits), Expect = 9.8e-222, P = 9.8e-222
Identities = 445/779 (57%), Positives = 554/779 (71%)
Query: 7 SRDEVIAKLIEMGFDDSDITEAVETVG-PSFNDAIEYILNGSVRNSKGKSVSWSSKCVTE 65
S D+++ K++EMGF+ D EAV+ VG S +DA+EYIL G+ R K S C +
Sbjct: 4 SSDQLVMKIVEMGFEKLDALEAVKAVGGKSCDDAVEYILKGNHRTGGFKPASLL--CSSG 61
Query: 66 NGKTLGKRTL-SSANSLGQMRQASLLDHFQSGNRQKRGKRNXXXXXXXXXXXXXXXIVEE 124
+ K LGKR + SS +S RQ+SLLDHF+S N+ K+ EE
Sbjct: 62 SNKILGKRAMPSSFSSSESKRQSSLLDHFRSVNQNKKKGDTFGTVEVDSQLETVSEHSEE 121
Query: 125 QKESYPG--MDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEAL 182
++S M+ + E L C E S WE +VNS+L+ FG SSL++FQ+EAL
Sbjct: 122 VRKSLAPVFMESSCFPEGQLLN-GCS---EASSSWEKRVNSILRNRFGISSLRSFQREAL 177
Query: 183 SAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACF 242
S W+AH DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQC KLS+H V+ACF
Sbjct: 178 STWVAHKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLSRHKVSACF 237
Query: 243 LGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWG 302
LGSGQ DN +E+KA++GMY IIYVCPETV+RLIKPLQ+LA++ GIALFAIDE HCVSKWG
Sbjct: 238 LGSGQLDNCIEEKAMQGMYQIIYVCPETVVRLIKPLQKLAKTHGIALFAIDEAHCVSKWG 297
Query: 303 HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVL 362
HDFRP YR+LSVLRENF A+NL+ L++D+P+MALTATAT+ V+EDIL+SLH+SK TK VL
Sbjct: 298 HDFRPHYRKLSVLRENFCASNLEFLEYDVPIMALTATATVNVQEDILESLHLSKETKIVL 357
Query: 363 TSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYXXXXXXXXXXXSAIPQXXXXXXXXXX 422
TSFFRPNL+FSVKHS+T +SY KDF L+D+Y + I +
Sbjct: 358 TSFFRPNLQFSVKHSRTKFASSYAKDFQNLVDLYSEKKNSTGKKLAVISRESEEQTDFGS 417
Query: 423 XXXXXXXXXXXPNIGDGYYDDEDVGNSPMGKEMSVEFLEND-----SVDDWDVACGEFYG 477
+ + NS GKE+S +LE++ SVDDWDVACGEF
Sbjct: 418 HDSENIHETDYDEDEEDQENSLAKKNSSNGKELSEAYLEDETDIFQSVDDWDVACGEFCA 477
Query: 478 HSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGV 537
P S E ++ P+E+ Q+ LE GLTIIYVPTRKE+++IAKYLCG G+
Sbjct: 478 -MP--------SCELLEI-PVPSEK----QKDLE-GLTIIYVPTRKESVNIAKYLCGVGL 522
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
KAAAYNASLPK LR+VH +FH+NKL+VVVATIAFGMGIDK NVR+IIHYGW QSLEAYY
Sbjct: 523 KAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLEAYY 582
Query: 598 QEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
QEAGRAGRDG LA+CVLYA+LS PTLLPSRRS++QT+QAY+MLSDCFRYGMNTS CRAK
Sbjct: 583 QEAGRAGRDGELAECVLYADLSRAPTLLPSRRSKEQTEQAYKMLSDCFRYGMNTSQCRAK 642
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAY-----NEQSNSMDDD 712
ILVEYFGE+FS +KC CDVC +GPPE+ +++EEAN+L QVI A+ N+ ++ +D
Sbjct: 643 ILVEYFGEEFSSKKCNSCDVCTEGPPELVDVREEANLLFQVITAFHLQVDNDSEHAPYED 702
Query: 713 DGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDDR 771
G+ + K+ K +PNL F+SK+REQ +K+ TD LWW+GLARIME +GYI+E D++
Sbjct: 703 YGLGNS-KQNKLSHKPNLLFFISKLREQCEKFKETDCLWWKGLARIMEAEGYIKEMDNK 760
>TIGR_CMR|GSU_0898 [details] [associations]
symbol:GSU_0898 "ATP-dependent DNA helicase RecQ"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_951954.1 ProteinModelPortal:Q74ER2 SMR:Q74ER2
GeneID:2687381 KEGG:gsu:GSU0898 PATRIC:22024565
ProtClustDB:CLSK828090 BioCyc:GSUL243231:GH27-885-MONOMER
Uniprot:Q74ER2
Length = 603
Score = 380 (138.8 bits), Expect = 2.8e-62, Sum P(2) = 2.8e-62
Identities = 97/217 (44%), Positives = 130/217 (59%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++L+ FG+ S + FQ+E + D VL TG GKSLC+QIP+L+ V +VISPL
Sbjct: 7 AVLRTVFGYRSFRPFQEEIVDRVARGGDTFVLMPTGGGKSLCYQIPSLVRPGVGIVISPL 66
Query: 223 ISLMHDQCSKLSKHGVTA-CFLGS-GQPDNK-VEQKALRGMYSIIYVCPETVIRLIKP-- 277
ISLM DQ L ++GV A C+ + G+ +++ V + G ++YV PE RL+
Sbjct: 67 ISLMKDQVDALRENGVAAACYNSTLGERESRRVLARLHGGELDLLYVAPE---RLMTDAF 123
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L+RL E IALFAIDE HCVS+WGHDFRP+Y L LR F +P++ALT
Sbjct: 124 LERLREIP-IALFAIDEAHCVSQWGHDFRPEYVELGRLRGLFPT---------VPMIALT 173
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ATA Q R DI+ L + FV T F RPN+R+SV
Sbjct: 174 ATADAQTRGDIVTRLGLRDAEMFV-TGFDRPNIRYSV 209
Score = 326 (119.8 bits), Expect = 2.8e-62, Sum P(2) = 2.8e-62
Identities = 82/213 (38%), Positives = 117/213 (54%)
Query: 487 DRSFERTDLLNK--PAERLS--MLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
DR R +L K P +L + P E G I+Y +RK +A+ L GV+A AY
Sbjct: 201 DRPNIRYSVLEKQKPFRQLEEFLATRPREAG--IVYCLSRKRVEEVAEKLRAAGVEAGAY 258
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L ++ RV F + + VVVAT+AFGMGIDK NVR ++HY P+++E+YYQE GR
Sbjct: 259 HAGLADAERSRVQEAFLRDDIRVVVATVAFGMGIDKPNVRFVVHYDLPKNIESYYQETGR 318
Query: 603 AGRDGHLADCVLYANLSSMP---TLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A+ +L +P +L+ S + +Q + L+ + CR + L
Sbjct: 319 AGRDGLPAEALLLFGYGDIPVSRSLIESGGNPEQVRIELHKLNAMVGFA-EALVCRRRAL 377
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ YFGE E C CD+C+ PPE + EEA
Sbjct: 378 LGYFGERLE-EPCGNCDLCL-APPETFDATEEA 408
>UNIPROTKB|P15043 [details] [associations]
symbol:recQ species:83333 "Escherichia coli K-12"
[GO:0046914 "transition metal ion binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IMP]
[GO:0017116 "single-stranded DNA-dependent ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0017117 "single-stranded
DNA-dependent ATP-dependent DNA helicase complex" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IEA;IDA;IMP] [GO:0006281
"DNA repair" evidence=IEA;IGI] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA;IGI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0030894 "replisome" evidence=IDA] [GO:0009432
"SOS response" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0046914
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
EMBL:M87049 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 GO:GO:0030894
GO:GO:0017116 GO:GO:0017117 EMBL:M30198 HOGENOM:HOG000044388
KO:K03654 TIGRFAMs:TIGR01389 RefSeq:YP_026263.3 RefSeq:YP_491620.1
PDB:1OYW PDB:1OYY PDB:1WUD PDBsum:1OYW PDBsum:1OYY PDBsum:1WUD
ProteinModelPortal:P15043 SMR:P15043 DIP:DIP-10656N IntAct:P15043
MINT:MINT-1223947 EnsemblBacteria:EBESCT00000003276
EnsemblBacteria:EBESCT00000015928 GeneID:12930625 GeneID:948318
KEGG:ecj:Y75_p3356 KEGG:eco:b3822 PATRIC:32123145 EchoBASE:EB0826
EcoGene:EG10833 OMA:YCLSRAK ProtClustDB:PRK11057
BioCyc:EcoCyc:EG10833-MONOMER BioCyc:ECOL316407:JW5855-MONOMER
BioCyc:MetaCyc:EG10833-MONOMER EvolutionaryTrace:P15043
Genevestigator:P15043 Uniprot:P15043
Length = 609
Score = 381 (139.2 bits), Expect = 6.3e-62, Sum P(2) = 6.3e-62
Identities = 89/218 (40%), Positives = 128/218 (58%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
E +L++ FG+ + Q+E + L+ DCLV+ TG GKSLC+QIPALL + V
Sbjct: 10 ESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTV 69
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSGQP-DNKVE-QKALR-GMYSIIYVCPETVIRL 274
V+SPLISLM DQ +L +GV A L S Q + ++E R G ++Y+ PE ++ L
Sbjct: 70 VVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLM-L 128
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
L+ LA + L A+DE HC+S+WGHDFRP+Y L LR+ F +P M
Sbjct: 129 DNFLEHLAHWNPV-LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPT---------LPFM 178
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRF 372
ALTATA R+DI++ L ++ ++SF RPN+R+
Sbjct: 179 ALTATADDTTRQDIVRLLGLNDPL-IQISSFDRPNIRY 215
Score = 322 (118.4 bits), Expect = 6.3e-62, Sum P(2) = 6.3e-62
Identities = 85/255 (33%), Positives = 134/255 (52%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP ++L + IIY +R + A L G+ AAAY+A L + V +
Sbjct: 222 KPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEK 281
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F + L++VVAT+AFGMGI+K NVR ++H+ P+++E+YYQE GRAGRDG A+ +L+ +
Sbjct: 282 FQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYD 341
Query: 618 LSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNT-------SCCRAKILVEYFGEDFSHE 670
+ M L RR ++ Q L D R+ +N CR +L+ YFGE E
Sbjct: 342 PADMAWL---RRCLEEKPQG--QLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEG-RQE 395
Query: 671 KCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNL 730
C CD+C+D PP+ + +A I + I N++ M + G Q+ D +
Sbjct: 396 PCGNCDICLD-PPKQYDGSTDAQIALSTIGRVNQRFG-MGYVVEVIRGANNQRIRDYGHD 453
Query: 731 KMFVSKI-REQSQKY 744
K+ V + R++S ++
Sbjct: 454 KLKVYGMGRDKSHEH 468
>UNIPROTKB|F1NAR0 [details] [associations]
symbol:F1NAR0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000403 "Y-form DNA
binding" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0006979 "response to oxidative stress"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IEA] [GO:0009378 "four-way junction helicase activity"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0010259 "multicellular organismal aging" evidence=IEA]
[GO:0030145 "manganese ion binding" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0032066 "nucleolus
to nucleoplasm transport" evidence=IEA] [GO:0032389 "MutLalpha
complex" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
GO:GO:0032066 OMA:GIEGDQW EMBL:AADN02016143 IPI:IPI01017120
Ensembl:ENSGALT00000016720 Uniprot:F1NAR0
Length = 1367
Score = 420 (152.9 bits), Expect = 1.3e-61, Sum P(3) = 1.3e-61
Identities = 94/218 (43%), Positives = 134/218 (61%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQIPALLTGKVV 216
E+ + + LK +FGHSS K Q + + + L D LV+ ATG GKSLC+Q P + TG
Sbjct: 445 EIHI-ACLKTYFGHSSFKPVQWKVIHSVLEDKRDNLVVMATGYGKSLCYQFPPVYTGGTG 503
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
+VI PLISLM DQ +L+ G+++C LGS Q + V+ G+Y +IY+ PE ++
Sbjct: 504 IVICPLISLMEDQVLQLTMSGISSCLLGSAQSKD-VKDNIKAGLYRVIYMTPEFCSGNLE 562
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
LQ + + GIAL A+DE HC+S+WGHDFR +R+L N+LK +P++AL
Sbjct: 563 LLQDIDRTTGIALIAVDEAHCISEWGHDFRISFRKL---------NSLKKALPSVPIVAL 613
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TATA+ +REDI+ L++ K + TSF RPNL V
Sbjct: 614 TATASPSIREDIVNCLNL-KNPQVTCTSFDRPNLYLEV 650
Score = 292 (107.8 bits), Expect = 1.3e-61, Sum P(3) = 1.3e-61
Identities = 85/281 (30%), Positives = 142/281 (50%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L GV AY+A + + R H +F ++++ VVAT+A
Sbjct: 677 EGPTIIYCPSRKATEQVMFELNKLGVTCGAYHAGMGIQKRRDTHHQFMRDEIQCVVATVA 736
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R +IHYG P+ +E+YYQE GRAGRDG A C VL+ A+L LL
Sbjct: 737 FGMGINKADIRMVIHYGAPKEMESYYQEIGRAGRDGLPASCHVLWTAADLVLNRRLLNEI 796
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC--------QLCDVC-- 678
+E +ML +Y ++++ CR++I++ +F ED K + CD C
Sbjct: 797 HNEKFRLYKLKMLEKMEKY-LSSNSCRSRIILSHF-EDKQLRKVSSGIMGTEECCDNCRC 854
Query: 679 --------VDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNL 730
D +++ ++A L+ ++A E+ + + G Q+ DR
Sbjct: 855 RTSCLATSSDSDGGLQDFGKQAYQLLSAVSALEEKFGTRVPILFL-RGSNSQRLPDRYRK 913
Query: 731 KMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDDR 771
++ ++ WW+ L++ + +G++RE R
Sbjct: 914 HPLYGSGKDWTEN-------WWKSLSQQLIMEGFLREVSGR 947
Score = 49 (22.3 bits), Expect = 1.3e-61, Sum P(3) = 1.3e-61
Identities = 17/72 (23%), Positives = 37/72 (51%)
Query: 5 GTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVRNSKGKSVSWSSKCVT 64
G RDEV++ ++ + + E + + +D+ +G +RN + + + ++
Sbjct: 204 GERRDEVLSDDVKERL--TSLAEGMSYLAAKISDS-----SGQLRNLQRAAEILAD--IS 254
Query: 65 ENGKTLGKRTLS 76
EN KTLG +T++
Sbjct: 255 ENVKTLGTKTVN 266
Score = 37 (18.1 bits), Expect = 2.4e-60, Sum P(3) = 2.4e-60
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 128 SYPGMDCNLKAESDSLAVSCPKEVEIGSDW 157
SY DC+L +E +S V +W
Sbjct: 21 SYEASDCSLLSEDIRQTLSDGAAVGFDIEW 50
>TIGR_CMR|SO_4241 [details] [associations]
symbol:SO_4241 "ATP-dependent DNA helicase RecQ"
species:211586 "Shewanella oneidensis MR-1" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_719768.1 ProteinModelPortal:Q8E9M8 SMR:Q8E9M8
GeneID:1171845 KEGG:son:SO_4241 PATRIC:23528122
ProtClustDB:CLSK907564 Uniprot:Q8E9M8
Length = 607
Score = 381 (139.2 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 86/229 (37%), Positives = 138/229 (60%)
Query: 150 EVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPA 209
E ++ + + ++ L + FG+ ++ Q+E + DCLV+ TG GKSLC+Q+PA
Sbjct: 2 ETQLLNTHDDPLSERLAQVFGYRDFRDGQREVIERVCRGEDCLVIMPTGGGKSLCYQLPA 61
Query: 210 LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR----GMYSIIY 265
L+ + +V+SPLISLM DQ L + GV A +L S QP ++ + LR G ++Y
Sbjct: 62 LMMHGITIVVSPLISLMKDQVDSLLQTGVNAAYLNSSQP-RELSLEVLRQLHLGELKLLY 120
Query: 266 VCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLK 325
V PE ++ ++R+ +S +++FAIDE HC+S+WGHDFRP+Y L L++ F
Sbjct: 121 VSPERLLTA-DFIERM-QSLPLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFP----- 173
Query: 326 SLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P+MALTATA R++I + L ++ +L+SF RPN+R++V
Sbjct: 174 ----HVPMMALTATADQATRQNICERLGINPFK--LLSSFDRPNIRYTV 216
Score = 317 (116.6 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 85/266 (31%), Positives = 147/266 (55%)
Query: 489 SFERTDLLNKPAERLS---MLQEPL--EDGLT-IIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ AE+L+ L++ L ++G + IIY +R+ +A+ L G A AY
Sbjct: 206 SFDRPNIRYTVAEKLNAANQLRQFLLQQNGSSGIIYCSSRRRVDEVAERLTLQGFHAKAY 265
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A + + V F ++++++VVAT+AFGMGI+K NVR ++HY P+S+EAYYQE GR
Sbjct: 266 HAGMTPEERGEVQDSFLKDQIDIVVATVAFGMGINKSNVRFVVHYDIPKSIEAYYQETGR 325
Query: 603 AGRDGHLADC-VLY--ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A+ +L+ A++ + L+ Q + + L+ + CR ++L
Sbjct: 326 AGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQQQVEFHKLNTMAAFA-EAQTCRRQVL 384
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGI 719
+ YF E + E C CD+C+D PP+ N E+A ++ I ++ ++ + G
Sbjct: 385 LHYFDES-ALEPCGNCDICLD-PPKRYNGSEDAQKVLSCIYRLGQRFG-INHLIEVLRGS 441
Query: 720 KKQKFMDRPNLKMFVSKI-REQSQKY 744
K +DR + K+ I +++S +Y
Sbjct: 442 KGAAIVDRGHDKLSTWGIGKDKSHEY 467
>UNIPROTKB|F1PZR2 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010396
Uniprot:F1PZR2
Length = 1336
Score = 429 (156.1 bits), Expect = 2.3e-61, Sum P(3) = 2.3e-61
Identities = 97/220 (44%), Positives = 134/220 (60%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ LK +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + +G++ +VISP
Sbjct: 515 NFLKIYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYSGRIGLVISP 574
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LISLM DQ +L + ACFLGS Q N +E L G Y I+Y+ PE + LQ+L
Sbjct: 575 LISLMEDQVLQLKMSNIPACFLGSAQSKNVLEDIKL-GKYRIVYITPEFCSGNLFLLQQL 633
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
GI L A+DE HC+S+WGHDFR +R L +LK++ +P++ALTATA+
Sbjct: 634 QADIGITLIAVDEAHCISEWGHDFRSSFRTLG---------SLKAILPSVPIVALTATAS 684
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
+REDI++ L++ K + T F RPNL V+ KT S
Sbjct: 685 SSIREDIVRCLNL-KNPQITCTGFDRPNLYLEVRR-KTGS 722
Score = 287 (106.1 bits), Expect = 2.3e-61, Sum P(3) = 2.3e-61
Identities = 85/273 (31%), Positives = 135/273 (49%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + AY+A L R +H F ++++ VVATIA
Sbjct: 743 EGPTIIYCPSRKTTEQVTAELRKLKLACGAYHAGLDIKSRREIHHRFMRDEIQCVVATIA 802
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYANLSSMPTLLPSRRS 630
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+A L R
Sbjct: 803 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPAD---ICLNRHRL 859
Query: 631 EDQTKQAYR-----MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC--------QLCDV 677
+ T + +R M++ +Y ++++ CR ++++ +F ED K Q CD
Sbjct: 860 SEITSEKFRLYKLKMMAKMEKY-LHSTRCRRQLILSHF-EDKQLRKASVGIMGTEQCCDN 917
Query: 678 CVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQ-KFMDRPNLKMFVSK 736
C + ++ ++++ Q Q S G GI F+ N + K
Sbjct: 918 CRSRLDQCSSI-DDSDDASQDFGPQTFQLLSAVKILGEKFGIGLPILFLQGSNSQRLEDK 976
Query: 737 IREQSQKYLATDLL--WWRGLARIMENKGYIRE 767
R S D WW+ L+R + +G++ E
Sbjct: 977 YRRHSLFGTGKDQKESWWKALSRQLMAEGFLVE 1009
Score = 42 (19.8 bits), Expect = 9.3e-20, Sum P(3) = 9.3e-20
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 482 RDRDTDRSFE---RTDLLNKPAERLSMLQEPLEDGLTI 516
+D D +F+ + D +P ++ ++ LEDGL +
Sbjct: 347 KDETWDTTFDNLIKHDEGTEPQNKVKQKEDGLEDGLEV 384
Score = 41 (19.5 bits), Expect = 2.3e-61, Sum P(3) = 2.3e-61
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 128 SYPGMDCNLKAESDSLAVSCPKEVEIGSDW 157
SY DC+ +E S+ +S V +W
Sbjct: 61 SYEASDCSFLSEDISMNLSTGGVVGFDMEW 90
Score = 41 (19.5 bits), Expect = 1.2e-19, Sum P(3) = 1.2e-19
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 306 RPDYRRLSVLRENFGANNLKSLKFDI 331
RP+ R+++ L+ FG ++ K +++ +
Sbjct: 508 RPNARQINFLKIYFGHSSFKPVQWKV 533
>UNIPROTKB|F1PZR3 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010395
Uniprot:F1PZR3
Length = 1499
Score = 429 (156.1 bits), Expect = 4.1e-61, Sum P(3) = 4.1e-61
Identities = 97/220 (44%), Positives = 134/220 (60%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ LK +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + +G++ +VISP
Sbjct: 596 NFLKIYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYSGRIGLVISP 655
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LISLM DQ +L + ACFLGS Q N +E L G Y I+Y+ PE + LQ+L
Sbjct: 656 LISLMEDQVLQLKMSNIPACFLGSAQSKNVLEDIKL-GKYRIVYITPEFCSGNLFLLQQL 714
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
GI L A+DE HC+S+WGHDFR +R L +LK++ +P++ALTATA+
Sbjct: 715 QADIGITLIAVDEAHCISEWGHDFRSSFRTLG---------SLKAILPSVPIVALTATAS 765
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
+REDI++ L++ K + T F RPNL V+ KT S
Sbjct: 766 SSIREDIVRCLNL-KNPQITCTGFDRPNLYLEVRR-KTGS 803
Score = 287 (106.1 bits), Expect = 4.1e-61, Sum P(3) = 4.1e-61
Identities = 85/273 (31%), Positives = 135/273 (49%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + AY+A L R +H F ++++ VVATIA
Sbjct: 823 EGPTIIYCPSRKTTEQVTAELRKLKLACGAYHAGLDIKSRREIHHRFMRDEIQCVVATIA 882
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYANLSSMPTLLPSRRS 630
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+A L R
Sbjct: 883 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPAD---ICLNRHRL 939
Query: 631 EDQTKQAYR-----MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC--------QLCDV 677
+ T + +R M++ +Y ++++ CR ++++ +F ED K Q CD
Sbjct: 940 SEITSEKFRLYKLKMMAKMEKY-LHSTRCRRQLILSHF-EDKQLRKASVGIMGTEQCCDN 997
Query: 678 CVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQ-KFMDRPNLKMFVSK 736
C + ++ ++++ Q Q S G GI F+ N + K
Sbjct: 998 CRSRLDQCSSI-DDSDDASQDFGPQTFQLLSAVKILGEKFGIGLPILFLQGSNSQRLEDK 1056
Query: 737 IREQSQKYLATDLL--WWRGLARIMENKGYIRE 767
R S D WW+ L+R + +G++ E
Sbjct: 1057 YRRHSLFGTGKDQKESWWKALSRQLMAEGFLVE 1089
Score = 42 (19.8 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 482 RDRDTDRSFE---RTDLLNKPAERLSMLQEPLEDGLTI 516
+D D +F+ + D +P ++ ++ LEDGL +
Sbjct: 342 KDETWDTTFDNLIKHDEGTEPQNKVKQKEDGLEDGLEV 379
Score = 41 (19.5 bits), Expect = 4.1e-61, Sum P(3) = 4.1e-61
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 128 SYPGMDCNLKAESDSLAVSCPKEVEIGSDW 157
SY DC+ +E S+ +S V +W
Sbjct: 56 SYEASDCSFLSEDISMNLSTGGVVGFDMEW 85
Score = 41 (19.5 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 306 RPDYRRLSVLRENFGANNLKSLKFDI 331
RP+ R+++ L+ FG ++ K +++ +
Sbjct: 589 RPNARQINFLKIYFGHSSFKPVQWKV 614
>UNIPROTKB|F1PUF8 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000037050
OMA:TERICLM Uniprot:F1PUF8
Length = 1574
Score = 429 (156.1 bits), Expect = 5.2e-61, Sum P(3) = 5.2e-61
Identities = 97/220 (44%), Positives = 134/220 (60%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ LK +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + +G++ +VISP
Sbjct: 628 NFLKIYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYSGRIGLVISP 687
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LISLM DQ +L + ACFLGS Q N +E L G Y I+Y+ PE + LQ+L
Sbjct: 688 LISLMEDQVLQLKMSNIPACFLGSAQSKNVLEDIKL-GKYRIVYITPEFCSGNLFLLQQL 746
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
GI L A+DE HC+S+WGHDFR +R L +LK++ +P++ALTATA+
Sbjct: 747 QADIGITLIAVDEAHCISEWGHDFRSSFRTLG---------SLKAILPSVPIVALTATAS 797
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
+REDI++ L++ K + T F RPNL V+ KT S
Sbjct: 798 SSIREDIVRCLNL-KNPQITCTGFDRPNLYLEVRR-KTGS 835
Score = 287 (106.1 bits), Expect = 5.2e-61, Sum P(3) = 5.2e-61
Identities = 85/273 (31%), Positives = 135/273 (49%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + AY+A L R +H F ++++ VVATIA
Sbjct: 855 EGPTIIYCPSRKTTEQVTAELRKLKLACGAYHAGLDIKSRREIHHRFMRDEIQCVVATIA 914
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYANLSSMPTLLPSRRS 630
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+A L R
Sbjct: 915 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPAD---ICLNRHRL 971
Query: 631 EDQTKQAYR-----MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC--------QLCDV 677
+ T + +R M++ +Y ++++ CR ++++ +F ED K Q CD
Sbjct: 972 SEITSEKFRLYKLKMMAKMEKY-LHSTRCRRQLILSHF-EDKQLRKASVGIMGTEQCCDN 1029
Query: 678 CVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQ-KFMDRPNLKMFVSK 736
C + ++ ++++ Q Q S G GI F+ N + K
Sbjct: 1030 CRSRLDQCSSI-DDSDDASQDFGPQTFQLLSAVKILGEKFGIGLPILFLQGSNSQRLEDK 1088
Query: 737 IREQSQKYLATDLL--WWRGLARIMENKGYIRE 767
R S D WW+ L+R + +G++ E
Sbjct: 1089 YRRHSLFGTGKDQKESWWKALSRQLMAEGFLVE 1121
Score = 42 (19.8 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 482 RDRDTDRSFE---RTDLLNKPAERLSMLQEPLEDGLTI 516
+D D +F+ + D +P ++ ++ LEDGL +
Sbjct: 461 KDETWDTTFDNLIKHDEGTEPQNKVKQKEDGLEDGLEV 498
Score = 41 (19.5 bits), Expect = 5.2e-61, Sum P(3) = 5.2e-61
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 128 SYPGMDCNLKAESDSLAVSCPKEVEIGSDW 157
SY DC+ +E S+ +S V +W
Sbjct: 175 SYEASDCSFLSEDISMNLSTGGVVGFDMEW 204
Score = 41 (19.5 bits), Expect = 2.3e-19, Sum P(3) = 2.3e-19
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 306 RPDYRRLSVLRENFGANNLKSLKFDI 331
RP+ R+++ L+ FG ++ K +++ +
Sbjct: 621 RPNARQINFLKIYFGHSSFKPVQWKV 646
>UNIPROTKB|Q9KVF0 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 375 (137.1 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 89/227 (39%), Positives = 133/227 (58%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L + FG+ + Q+E + A LA D LV+ TG GKSLC+QIPAL+ V +VISPLI
Sbjct: 28 VLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLI 87
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +GV A + S + + + G ++YV PE V+ + ++R
Sbjct: 88 SLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTA-EFIER 146
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L+ +A+ A+DE HC+S+WGHDFRP+Y L L++ F ++P+MALTATA
Sbjct: 147 LSHLP-LAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFP---------NVPVMALTATA 196
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY 385
R DI++ L +++ ++ L SF RPN+R+ + KH S Y
Sbjct: 197 DDATRHDIMQRLQLNEPHQY-LGSFDRPNIRYMLVEKHKPVSQVIRY 242
Score = 320 (117.7 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 77/233 (33%), Positives = 129/233 (55%)
Query: 478 HSPHRDRDT-DRSFERTDLL--NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG 534
+ PH+ + DR R L+ +KP ++ E IIY +RK+ + + LCG
Sbjct: 211 NEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQCGIIYCGSRKKVEMLTEKLCG 270
Query: 535 FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLE 594
++AA+Y+A + + V F + L++VVAT+AFGMGI+K NVR ++H+ P+++E
Sbjct: 271 NHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIE 330
Query: 595 AYYQEAGRAGRDGHLADCV-LY--ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNT 651
+YYQE GRAGRDG A+ + LY A+++ + +L + Q + L+ +
Sbjct: 331 SYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFA-EA 389
Query: 652 SCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNE 704
CR ++L+ YFGE + + C CD+C+D PP+ + EEA + + N+
Sbjct: 390 QTCRRQVLLNYFGE-YRDKPCGNCDICLD-PPKRFDATEEARKALSCVYRVNQ 440
>TIGR_CMR|VC_0196 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 375 (137.1 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 89/227 (39%), Positives = 133/227 (58%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L + FG+ + Q+E + A LA D LV+ TG GKSLC+QIPAL+ V +VISPLI
Sbjct: 28 VLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLI 87
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +GV A + S + + + G ++YV PE V+ + ++R
Sbjct: 88 SLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTA-EFIER 146
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L+ +A+ A+DE HC+S+WGHDFRP+Y L L++ F ++P+MALTATA
Sbjct: 147 LSHLP-LAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFP---------NVPVMALTATA 196
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY 385
R DI++ L +++ ++ L SF RPN+R+ + KH S Y
Sbjct: 197 DDATRHDIMQRLQLNEPHQY-LGSFDRPNIRYMLVEKHKPVSQVIRY 242
Score = 320 (117.7 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 77/233 (33%), Positives = 129/233 (55%)
Query: 478 HSPHRDRDT-DRSFERTDLL--NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG 534
+ PH+ + DR R L+ +KP ++ E IIY +RK+ + + LCG
Sbjct: 211 NEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQCGIIYCGSRKKVEMLTEKLCG 270
Query: 535 FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLE 594
++AA+Y+A + + V F + L++VVAT+AFGMGI+K NVR ++H+ P+++E
Sbjct: 271 NHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIE 330
Query: 595 AYYQEAGRAGRDGHLADCV-LY--ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNT 651
+YYQE GRAGRDG A+ + LY A+++ + +L + Q + L+ +
Sbjct: 331 SYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFA-EA 389
Query: 652 SCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNE 704
CR ++L+ YFGE + + C CD+C+D PP+ + EEA + + N+
Sbjct: 390 QTCRRQVLLNYFGE-YRDKPCGNCDICLD-PPKRFDATEEARKALSCVYRVNQ 440
>UNIPROTKB|O93530 [details] [associations]
symbol:wrn "Werner syndrome ATP-dependent helicase homolog"
species:8355 "Xenopus laevis" [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS] [GO:0030145
"manganese ion binding" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030145 GO:GO:0006310
SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 KO:K10900 CTD:7486 HOVERGEN:HBG000325
EMBL:AF067418 PIR:T14895 RefSeq:NP_001081838.1 UniGene:Xl.404
ProteinModelPortal:O93530 SMR:O93530 GeneID:398079 KEGG:xla:398079
Xenbase:XB-GENE-992879 Uniprot:O93530
Length = 1436
Score = 411 (149.7 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
Identities = 98/219 (44%), Positives = 127/219 (57%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
S LK +FGHSS K Q + + + L D LV+ ATG GKSLC+Q + T + +VI P
Sbjct: 479 SCLKTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVICP 538
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LISLM DQ +L +++CFLGS Q N V Q G +IY+ PE R I LQ L
Sbjct: 539 LISLMEDQVLQLEMSNISSCFLGSAQSKN-VLQDVKDGKMRVIYMTPEFCSRGISLLQDL 597
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
GI L AIDE HC+S+WGHDFR YR L +LK + ++P++ALTATA+
Sbjct: 598 DNRYGITLIAIDEAHCISEWGHDFRSAYRSLG---------SLKRMLPNVPIVALTATAS 648
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380
+REDI KSL++ + TSF RPNL V T+
Sbjct: 649 PSIREDITKSLNLHN-PQVTCTSFDRPNLYLDVARKTTN 686
Score = 295 (108.9 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
Identities = 85/279 (30%), Positives = 145/279 (51%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TI+Y PTRK + + L G+ Y+A + Q R VH F +++ VVAT+A
Sbjct: 707 EGATIVYCPTRKTSEQVTAELIKLGIACGTYHAGMGIKQRREVHHRFMRDEIHCVVATVA 766
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYA--NLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C L+A +++ +L
Sbjct: 767 FGMGINKPDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSCCHALWAQADMNFNRHMLGEI 826
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGED----------FSHEKC------ 672
++ + +ML+ +Y +N+S CR KI++ +F ED EKC
Sbjct: 827 PNKGFREYKLKMLTKMEKY-LNSSTCRRKIILSHF-EDKQLRKASSGIMGTEKCCDNCKT 884
Query: 673 -QLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIY--SGIKKQKFMDR-P 728
+C++ ++ + NL++ + I+A + + G Q+ DR
Sbjct: 885 RLICNISINDTED--NLQDFGPQAYKFISAVDVLGQKFGTGVPVLFLRGSTSQRVPDRFR 942
Query: 729 NLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIRE 767
N +F S ++Q++ + W+ LAR + +GY++E
Sbjct: 943 NHSLFSSG-KDQTEAF-------WKVLARQLITEGYLQE 973
Score = 38 (18.4 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 461 ENDSVDDWDVACGE 474
E D DDWD + E
Sbjct: 459 EEDDDDDWDPSMPE 472
>UNIPROTKB|Q14191 [details] [associations]
symbol:WRN "Werner syndrome ATP-dependent helicase"
species:9606 "Homo sapiens" [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0040009
"regulation of growth rate" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031297 "replication fork processing" evidence=IMP;IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0007569 "cell aging" evidence=IMP]
[GO:0010259 "multicellular organismal aging" evidence=IMP]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0007568 "aging" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003678 "DNA helicase activity" evidence=IDA;IMP]
[GO:0004386 "helicase activity" evidence=IDA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0000731 "DNA synthesis involved
in DNA repair" evidence=IDA] [GO:0010225 "response to UV-C"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0032389 "MutLalpha complex" evidence=IDA] [GO:0000403 "Y-form
DNA binding" evidence=IDA] [GO:0043138 "3'-5' DNA helicase
activity" evidence=IDA] [GO:0000405 "bubble DNA binding"
evidence=IDA] [GO:0009378 "four-way junction helicase activity"
evidence=IDA] [GO:0051880 "G-quadruplex DNA binding" evidence=IDA]
[GO:0006284 "base-excision repair" evidence=IDA] [GO:0051345
"positive regulation of hydrolase activity" evidence=IDA]
[GO:0006979 "response to oxidative stress" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0000287 "magnesium ion
binding" evidence=IDA] [GO:0030145 "manganese ion binding"
evidence=IDA] [GO:0006259 "DNA metabolic process" evidence=IDA]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0071480 "cellular response to gamma
radiation" evidence=IDA] [GO:0004527 "exonuclease activity"
evidence=IDA] [GO:0009267 "cellular response to starvation"
evidence=IDA] [GO:0032066 "nucleolus to nucleoplasm transport"
evidence=IDA] [GO:0042981 "regulation of apoptotic process"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IMP;IDA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00474 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0005813 Pathway_Interaction_DB:telomerasepathway
GO:GO:0042803 GO:GO:0005654 GO:GO:0006979 GO:GO:0005730
GO:GO:0042981 GO:GO:0032403 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 GO:GO:0004003 SUPFAM:SSF53098
MIM:114500 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345 GO:GO:0010259
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000723 GO:GO:0010225 GO:GO:0007569 eggNOG:COG0514
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403
GO:GO:0000731 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
GO:GO:0031297 GO:GO:0043138 GO:GO:0032066 KO:K10900 EMBL:L76937
EMBL:AY818673 EMBL:AF091214 EMBL:AF181897 EMBL:AF181896
EMBL:AY442327 EMBL:AC084736 IPI:IPI00029107 RefSeq:NP_000544.2
UniGene:Hs.632050 PDB:2AXL PDB:2DGZ PDB:2E1E PDB:2E1F PDB:2FBT
PDB:2FBV PDB:2FBX PDB:2FBY PDB:2FC0 PDB:3AAF PDBsum:2AXL
PDBsum:2DGZ PDBsum:2E1E PDBsum:2E1F PDBsum:2FBT PDBsum:2FBV
PDBsum:2FBX PDBsum:2FBY PDBsum:2FC0 PDBsum:3AAF DisProt:DP00443
ProteinModelPortal:Q14191 SMR:Q14191 DIP:DIP-31380N IntAct:Q14191
MINT:MINT-95856 STRING:Q14191 PhosphoSite:Q14191 DMDM:6136393
PaxDb:Q14191 PRIDE:Q14191 Ensembl:ENST00000298139 GeneID:7486
KEGG:hsa:7486 UCSC:uc003xio.4 CTD:7486 GeneCards:GC08P030948
H-InvDB:HIX0007441 HGNC:HGNC:12791 HPA:HPA028661 MIM:277700
MIM:604611 neXtProt:NX_Q14191 Orphanet:902 PharmGKB:PA367
HOGENOM:HOG000146447 HOVERGEN:HBG000325 InParanoid:Q14191
OMA:GIEGDQW OrthoDB:EOG4DNF3J PhylomeDB:Q14191
EvolutionaryTrace:Q14191 GenomeRNAi:7486 NextBio:29326 Bgee:Q14191
CleanEx:HS_WRN Genevestigator:Q14191 GermOnline:ENSG00000165392
Uniprot:Q14191
Length = 1432
Score = 417 (151.9 bits), Expect = 8.5e-60, Sum P(3) = 8.5e-60
Identities = 95/218 (43%), Positives = 131/218 (60%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D + + ATG GKSLCFQ P + GK+ +VISPLI
Sbjct: 540 LKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLI 599
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q +N + L G Y I+YV PE + LQ+L
Sbjct: 600 SLMEDQVLQLKMSNIPACFLGSAQSENVLTDIKL-GKYRIVYVTPEYCSGNMGLLQQLEA 658
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GI L A+DE HC+S+WGHDFR +R+L +LK+ +P++ALTATA+
Sbjct: 659 DIGITLIAVDEAHCISEWGHDFRDSFRKLG---------SLKTALPMVPIVALTATASSS 709
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
+REDI++ L++ + + T F RPNL V+ KT +
Sbjct: 710 IREDIVRCLNL-RNPQITCTGFDRPNLYLEVRR-KTGN 745
Score = 284 (105.0 bits), Expect = 8.5e-60, Sum P(3) = 8.5e-60
Identities = 63/166 (37%), Positives = 102/166 (61%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S + +H F ++++ V+ATIA
Sbjct: 764 EGPTIIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIA 823
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYA--NLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+A +++ LL
Sbjct: 824 FGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEI 883
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL 674
R+E +M++ +Y +++S CR +I++ +F ED +K L
Sbjct: 884 RNEKFRLYKLKMMAKMEKY-LHSSRCRRQIILSHF-EDKQVQKASL 927
Score = 44 (20.5 bits), Expect = 8.5e-60, Sum P(3) = 8.5e-60
Identities = 13/69 (18%), Positives = 34/69 (49%)
Query: 23 SDITEAVETVGPSFNDAIEYILNGSVRNSKGKSVSWSSKCVTENGKTLGKRTLSSANSLG 82
SD+ + + ++ D +++ + + + VS K ++EN +L + + S N
Sbjct: 248 SDMNKQLTSISEEVMDLAKHLPHAFSKLENPRRVSILLKDISENLYSLRRMIIGSTNIET 307
Query: 83 QMRQASLLD 91
++R ++ L+
Sbjct: 308 ELRPSNNLN 316
Score = 43 (20.2 bits), Expect = 1.1e-59, Sum P(3) = 1.1e-59
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 128 SYPGMDCNLKAESDSLAVSCPKEVEIGSDW 157
SY DC+ +E S+++S V +W
Sbjct: 56 SYDASDCSFLSEDISMSLSDGDVVGFDMEW 85
>FB|FBgn0002906 [details] [associations]
symbol:Blm "Bloom syndrome helicase ortholog" species:7227
"Drosophila melanogaster" [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IGI;IMP] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0000731 "DNA
synthesis involved in DNA repair" evidence=IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0000732 "strand displacement" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000403 "Y-form DNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0000733 "DNA strand renaturation"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:1901291 "negative
regulation of double-strand break repair via single-strand
annealing" evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 EMBL:AE014297
GO:GO:0005524 GO:GO:0005634 GO:GO:0006260 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0007131 GO:GO:0045003 eggNOG:COG0514
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:U92536 RefSeq:NP_524319.2
UniGene:Dm.2444 ProteinModelPortal:Q9VGI8 SMR:Q9VGI8 DIP:DIP-23386N
MINT:MINT-784091 STRING:Q9VGI8 PaxDb:Q9VGI8 PRIDE:Q9VGI8
EnsemblMetazoa:FBtr0082434 GeneID:41366 KEGG:dme:Dmel_CG6920
CTD:41366 FlyBase:FBgn0002906 InParanoid:Q9VGI8 OMA:KISSSAR
OrthoDB:EOG4JDFNV PhylomeDB:Q9VGI8 ChiTaRS:BLM GenomeRNAi:41366
NextBio:823498 Bgee:Q9VGI8 GermOnline:CG6920 GO:GO:0000403
GO:GO:0000733 GO:GO:0000731 GO:GO:1901291 GO:GO:0000732
Uniprot:Q9VGI8
Length = 1487
Score = 383 (139.9 bits), Expect = 1.7e-59, Sum P(2) = 1.7e-59
Identities = 95/222 (42%), Positives = 128/222 (57%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L FG S + Q + ++A L +DC VL TG GKSLC+Q+PA+LT V +VISPL S
Sbjct: 729 LSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKS 788
Query: 225 LMHDQCSKLSKHGVTACFLGSGQP--DNKVEQKALRG---MYSIIYVCPETV---IRLIK 276
L+ DQ +KL+ + A L Q D + L M ++YV PE + R
Sbjct: 789 LIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQD 848
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L L + I+ F IDE HCVS+WGHDFRPDY++L VL++ F ++P +AL
Sbjct: 849 TLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFP---------NVPTIAL 899
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
TATAT +VR DIL L++ K K+ L+SF R NLR+ V K
Sbjct: 900 TATATPRVRLDILAQLNL-KNCKWFLSSFNRSNLRYRVLPKK 940
Score = 316 (116.3 bits), Expect = 1.7e-59, Sum P(2) = 1.7e-59
Identities = 69/175 (39%), Positives = 102/175 (58%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RKE +K +C GV+A +Y+A L + ++ K+ V+ AT+AFGMG
Sbjct: 962 IIYCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMG 1021
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR ++HY P+S+E YYQEAGRAGRDG +ADC+LY N S M + S+ +
Sbjct: 1022 IDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDKALQ 1081
Query: 636 QAYRML--SDCFR---YGMNTSCCRAKILVEYFGEDFSHEKC-----QLCDVCVD 680
+ + + +R Y N + CR ++YFGE F+ E+C CD C++
Sbjct: 1082 YNVKKIHVDNLYRIVGYCENLTDCRRAQQLDYFGEHFTSEQCLENRETACDNCIN 1136
>TIGR_CMR|CBU_0472 [details] [associations]
symbol:CBU_0472 "ATP-dependent DNA helicase RecQ"
species:227377 "Coxiella burnetii RSA 493" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_819507.1 ProteinModelPortal:Q83E59 SMR:Q83E59
GeneID:1208356 KEGG:cbu:CBU_0472 PATRIC:17929635
ProtClustDB:CLSK914091 BioCyc:CBUR227377:GJ7S-469-MONOMER
Uniprot:Q83E59
Length = 601
Score = 390 (142.3 bits), Expect = 1.9e-59, Sum P(2) = 1.9e-59
Identities = 91/235 (38%), Positives = 136/235 (57%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
+K +L++ FG+ + + Q++ +++ +A D VL TG GKSLC+QIPAL+ V +V
Sbjct: 3 IKALEVLRQTFGYENFRPLQEKIINSVIAGEDNFVLMPTGGGKSLCYQIPALVREGVGIV 62
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR---GMYSIIYVCPETVIRLI 275
+SPLISLM DQ L+ +G A S + + + R ++Y+ PE ++
Sbjct: 63 VSPLISLMQDQVQALNANGAAAALYNSTLTEAEARKNLARLHNNELDLLYIAPERLMTE- 121
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L RL E + +AL AIDE HCVS+WGHDFRP+Y RL LRE F +P +A
Sbjct: 122 SFLSRLREVK-LALVAIDEAHCVSQWGHDFRPEYLRLGELREYFPK---------VPFIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASYKKD 388
LTATA Q R+DIL+ L ++K + SF RPN+R+++ K + ++ KD
Sbjct: 172 LTATADKQTRQDILQRLRLTKANVHI-ASFNRPNIRYTLLEKQKSYNQLVNFLKD 225
Score = 287 (106.1 bits), Expect = 1.9e-59, Sum P(2) = 1.9e-59
Identities = 65/193 (33%), Positives = 103/193 (53%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R +A L G A Y+A LP +Q + F + + ++VATIAFGMG
Sbjct: 232 IVYCLSRNRVEEVAAKLQADGYSALPYHAGLPAAQRGKTQEAFQRDDVNIIVATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL-YA--NLSSMPTLLPSRRSED 632
IDK NVR ++HY P+ +E YYQE GRAGRDG ++ +L Y +++ + + + + +E
Sbjct: 292 IDKPNVRFVVHYDLPKHIEGYYQETGRAGRDGLPSEALLLYGLRDIAVIKSFIENGNNEI 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ + L+ C CR ++L+ YF E + E C CD+C++ P E N EA
Sbjct: 352 RKRIELHKLN-CMSAFAEARTCRRRVLLNYFNESLT-EDCGNCDICLNSP-ETYNGTIEA 408
Query: 693 NILMQVIAAYNEQ 705
+ + E+
Sbjct: 409 QKALSCVYRVRER 421
>TAIR|locus:2197555 [details] [associations]
symbol:RECQL2 "RECQ helicase L2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IC] [GO:0006310 "DNA recombination" evidence=IC]
[GO:0009378 "four-way junction helicase activity" evidence=IDA]
[GO:0043138 "3'-5' DNA helicase activity" evidence=IDA] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0006310 EMBL:AC007654 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009378 GO:GO:0016592 GO:GO:0043138
EMBL:AJ404471 IPI:IPI00518751 IPI:IPI00846160 RefSeq:NP_001077639.1
RefSeq:NP_174421.2 UniGene:At.40359 HSSP:P15043
ProteinModelPortal:Q9FT73 SMR:Q9FT73 IntAct:Q9FT73 STRING:Q9FT73
PaxDb:Q9FT73 PRIDE:Q9FT73 EnsemblPlants:AT1G31360.1 GeneID:840026
KEGG:ath:AT1G31360 TAIR:At1g31360 InParanoid:Q9FT73 KO:K10899
OMA:ESSQTCH PhylomeDB:Q9FT73 ProtClustDB:CLSN2680338
Genevestigator:Q9FT73 Uniprot:Q9FT73
Length = 705
Score = 408 (148.7 bits), Expect = 3.0e-59, Sum P(2) = 3.0e-59
Identities = 93/228 (40%), Positives = 140/228 (61%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
+W+ + + + FG S + QKE ++A + D LV+ A G GKSLC+Q+PA+L G
Sbjct: 72 EWDSRADDVRFNVFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGGT 131
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKAL-RGM--YSIIYVCPET 270
+V+SPL+SL+ DQ L+ G++A L S G+ + K KAL +G I+YV PE
Sbjct: 132 TLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEK 191
Query: 271 VI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
V R + L++ + ++L +IDE HC S+WGHDFRPDY+ LS+L+ F
Sbjct: 192 VSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPK------ 245
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+P++ALTATAT +V+ D+++ LH+ K KFV +S RPNL +SV+
Sbjct: 246 ---VPMVALTATATQKVQNDLIEMLHIPKCVKFV-SSVNRPNLFYSVR 289
Score = 272 (100.8 bits), Expect = 3.0e-59, Sum P(2) = 3.0e-59
Identities = 66/199 (33%), Positives = 109/199 (54%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RKE IA L G+ A Y+A + + +VH + +NKL+V+V T+AFGMG
Sbjct: 317 IVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMG 376
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K +VR +IH+ +S+E YYQE+GRAGRDG ++C+L+ + +P R
Sbjct: 377 INKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVP------RQSSMVF 430
Query: 636 QAY---RMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ-LCDVCVDGPPEMKNLKEE 691
Y + L D RY + + CR +FGE + C +CD C E+K + +
Sbjct: 431 YEYSGLQNLYDIVRYCQSKTKCRRSAFFRHFGEP--SQDCNGMCDNCALSS-EVKEV--D 485
Query: 692 ANILMQVIAAYNEQSNSMD 710
+ L +++ + +++ + D
Sbjct: 486 VSDLSKLVVSMVQETQAKD 504
Score = 44 (20.5 bits), Expect = 2.8e-35, Sum P(2) = 2.8e-35
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 367 RPNLRFSVKHSKTSSRASYKKD 388
+P++RF + HS + S +Y ++
Sbjct: 379 KPDVRFVIHHSLSKSMETYYQE 400
>RGD|1311071 [details] [associations]
symbol:Recql "RecQ protein-like (DNA helicase Q1-like)"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0015630 "microtubule cytoskeleton"
evidence=IEA;ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 RGD:1311071 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
Length = 621
Score = 357 (130.7 bits), Expect = 3.9e-59, Sum P(2) = 3.9e-59
Identities = 90/246 (36%), Positives = 128/246 (52%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W KV +L+ F + Q E ++A +A D ++ TG GKSLC+Q+PAL +
Sbjct: 75 WSGKVKHVLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSDGFT 134
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETV 271
+VI PLISLM DQ L + G++A L S V E +IYV PE +
Sbjct: 135 LVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPEKI 194
Query: 272 IR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
+ + L++ E+ + A+DEVHC S+WGHDFRPDY+ L +L+ F
Sbjct: 195 AKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFP-------- 246
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKD 388
+I L+ LTATAT V +D K L + K F SF RPNL + V+ K SS + ++
Sbjct: 247 -NISLIGLTATATNHVLKDAQKILCVEKCLTFT-ASFNRPNLYYEVRQ-KPSSAEDFIEN 303
Query: 389 FCQLID 394
LI+
Sbjct: 304 IANLIN 309
Score = 324 (119.1 bits), Expect = 3.9e-59, Sum P(2) = 3.9e-59
Identities = 71/187 (37%), Positives = 112/187 (59%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY ++K++ + L GV+A Y+A++ +VHT++ N+L+VVVAT+AFGMG
Sbjct: 318 IIYCFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGMG 377
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR +IH+ +S+E YYQE+GRAGRD ADC+LY + + E+ +
Sbjct: 378 IDKPDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRISSMVVMENVGQ 437
Query: 636 QA-YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-QLCD-VCVDGPPEMKNLKEEA 692
Q Y M+S C N S CR ++ ++F E ++ + C ++CD C D E KN+ E
Sbjct: 438 QKLYEMVSYC----QNISKCRRALIAQHFDEVWNADACNKMCDNCCKDDSFEKKNITEHC 493
Query: 693 NILMQVI 699
L++++
Sbjct: 494 QALIKIL 500
Score = 41 (19.5 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 451 MGKEMSVEFLENDSV--DDWDVACGEFYG 477
M K M + E+ DDW C +YG
Sbjct: 391 MSKSMENYYQESGRAGRDDWRADCILYYG 419
>UNIPROTKB|Q6AYJ1 [details] [associations]
symbol:Recql "ATP-dependent DNA helicase Q1" species:10116
"Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 RGD:1311071
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
Length = 621
Score = 357 (130.7 bits), Expect = 3.9e-59, Sum P(2) = 3.9e-59
Identities = 90/246 (36%), Positives = 128/246 (52%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W KV +L+ F + Q E ++A +A D ++ TG GKSLC+Q+PAL +
Sbjct: 75 WSGKVKHVLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSDGFT 134
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETV 271
+VI PLISLM DQ L + G++A L S V E +IYV PE +
Sbjct: 135 LVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPEKI 194
Query: 272 IR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
+ + L++ E+ + A+DEVHC S+WGHDFRPDY+ L +L+ F
Sbjct: 195 AKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFP-------- 246
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKD 388
+I L+ LTATAT V +D K L + K F SF RPNL + V+ K SS + ++
Sbjct: 247 -NISLIGLTATATNHVLKDAQKILCVEKCLTFT-ASFNRPNLYYEVRQ-KPSSAEDFIEN 303
Query: 389 FCQLID 394
LI+
Sbjct: 304 IANLIN 309
Score = 324 (119.1 bits), Expect = 3.9e-59, Sum P(2) = 3.9e-59
Identities = 71/187 (37%), Positives = 112/187 (59%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY ++K++ + L GV+A Y+A++ +VHT++ N+L+VVVAT+AFGMG
Sbjct: 318 IIYCFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGMG 377
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR +IH+ +S+E YYQE+GRAGRD ADC+LY + + E+ +
Sbjct: 378 IDKPDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRISSMVVMENVGQ 437
Query: 636 QA-YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-QLCD-VCVDGPPEMKNLKEEA 692
Q Y M+S C N S CR ++ ++F E ++ + C ++CD C D E KN+ E
Sbjct: 438 QKLYEMVSYC----QNISKCRRALIAQHFDEVWNADACNKMCDNCCKDDSFEKKNITEHC 493
Query: 693 NILMQVI 699
L++++
Sbjct: 494 QALIKIL 500
Score = 41 (19.5 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 451 MGKEMSVEFLENDSV--DDWDVACGEFYG 477
M K M + E+ DDW C +YG
Sbjct: 391 MSKSMENYYQESGRAGRDDWRADCILYYG 419
>TAIR|locus:2127998 [details] [associations]
symbol:RecQl3 "AT4G35740" species:3702 "Arabidopsis
thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS;IDA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0009378 "four-way junction helicase activity" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043138
"3'-5' DNA helicase activity" evidence=IDA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
EMBL:AL161588 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG0514 KO:K10901 TIGRFAMs:TIGR00614 GO:GO:0036310
GO:GO:0009378 GO:GO:0008026 EMBL:AL031135 GO:GO:0043138 PIR:T04679
HSSP:P15043 EMBL:AJ404472 EMBL:AK229155 IPI:IPI00541767
IPI:IPI00545081 RefSeq:NP_195299.2 RefSeq:NP_849500.1
UniGene:At.20216 ProteinModelPortal:Q9FT72 SMR:Q9FT72 IntAct:Q9FT72
PaxDb:Q9FT72 PRIDE:Q9FT72 EnsemblPlants:AT4G35740.1 GeneID:829727
KEGG:ath:AT4G35740 TAIR:At4g35740 HOGENOM:HOG000239549
InParanoid:Q9FT72 OMA:YEVRYKD PhylomeDB:Q9FT72
ProtClustDB:CLSN2680292 Genevestigator:Q9FT72 Uniprot:Q9FT72
Length = 713
Score = 408 (148.7 bits), Expect = 4.3e-59, Sum P(2) = 4.3e-59
Identities = 91/221 (41%), Positives = 137/221 (61%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LL+ HFGH+ + Q EA+ A ++ DC L TG GKS+C+QIPAL +V+V+SPLI
Sbjct: 27 LLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVLVVSPLI 86
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSI--IYVCPETVIR--LIK 276
+LM +Q L + G+ A +L S Q NK+ + G S+ +YV PE + +
Sbjct: 87 ALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIATKGFML 146
Query: 277 PLQRLAESRGIA-LFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L++L SRG+ L AIDE HC+S WGHDFRP YR+LS LR++ D+P++A
Sbjct: 147 KLRKL-HSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLA---------DVPVLA 196
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
LTATA +V++D++ SL++ + + +SF RPN+ + V++
Sbjct: 197 LTATAAPKVQKDVIDSLNL-RNPLVLKSSFNRPNIFYEVRY 236
Score = 271 (100.5 bits), Expect = 4.3e-59, Sum P(2) = 4.3e-59
Identities = 71/206 (34%), Positives = 112/206 (54%)
Query: 494 DLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR 553
DLL+ L L + + IIY R ++ +L G+ +AAY+A L
Sbjct: 238 DLLDNAYTDLGNLLKSCGNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRST 297
Query: 554 VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV 613
V ++ +K +++VAT+AFGMGIDK +VR + H+ P+S+E++YQE+GRAGRD + V
Sbjct: 298 VLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSV 357
Query: 614 LYANLSS---MPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSC----CRAKILVEYFGED 666
LY + M LL R SE++ + + + F + T C CR K ++E FGE+
Sbjct: 358 LYYGVDDRKKMEYLL--RNSENKKSSSSKKPTSDFEQ-IVTYCEGSGCRRKKILESFGEE 414
Query: 667 FSHEKCQ-LCDVCVDGPPEMKNLKEE 691
F ++C+ CD C P ++ + EE
Sbjct: 415 FPVQQCKKTCDACKH-PNQVAHCLEE 439
Score = 45 (20.9 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 458 EFLENDSVDDWDVACGEFYGHSPHRDRDTDR---SFERTDLLNKPAERLSML--QEPLED 512
EFLEN+ + A FY +S + T R + R +L+ + + +S+ QEPLE+
Sbjct: 573 EFLENECYRKYSKAGKSFY-YS--QIASTVRWLGTASRDELMTRLSSVVSLAREQEPLEE 629
Query: 513 GL 514
L
Sbjct: 630 PL 631
>WB|WBGene00019334 [details] [associations]
symbol:K02F3.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
EMBL:FO080195 HSSP:P15043 KO:K10899 OMA:ESSQTCH
RefSeq:NP_001022656.1 RefSeq:NP_001022657.1
ProteinModelPortal:Q9TXJ8 SMR:Q9TXJ8 EnsemblMetazoa:K02F3.12a
GeneID:175246 KEGG:cel:CELE_K02F3.12 UCSC:K02F3.12a CTD:175246
WormBase:K02F3.12a HOGENOM:HOG000044388 InParanoid:Q9TXJ8
NextBio:887386 Uniprot:Q9TXJ8
Length = 631
Score = 352 (129.0 bits), Expect = 8.2e-59, Sum P(2) = 8.2e-59
Identities = 86/247 (34%), Positives = 132/247 (53%)
Query: 136 LKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLA 195
LK DS V+ + + G W + +LK+ F + Q+ A++A ++ D +V+
Sbjct: 73 LKTNEDSDVVTDRWDRD-GFPWSDEATKILKEQFHLEKFRPLQRAAINAVMSKEDAVVIL 131
Query: 196 ATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKV 252
+TG GKSLC+Q+PALL + +V+SPLISL+ DQ +L G+ + L S + +V
Sbjct: 132 STGGGKSLCYQLPALLANGLALVVSPLISLVEDQILQLRSLGIDSSSLNANTSKEEAKRV 191
Query: 253 EQKALR--GMYSIIYVCPETVIRLIKPLQRLAESRGIA---LFAIDEVHCVSKWGHDFRP 307
E + ++YV PE + + K + +L +S + L AIDEVHC S+WGHDFR
Sbjct: 192 EDAITNKDSKFRLLYVTPEKLAKSKKMMNKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRT 251
Query: 308 DYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFR 367
DY L+VL+ F +P++ LTATAT V +D+ L + F F R
Sbjct: 252 DYSFLNVLKRQFKG---------VPILGLTATATSNVLDDVKDMLGIQAALTF-RAGFNR 301
Query: 368 PNLRFSV 374
NL++ V
Sbjct: 302 SNLKYKV 308
Score = 327 (120.2 bits), Expect = 8.2e-59, Sum P(2) = 8.2e-59
Identities = 85/243 (34%), Positives = 125/243 (51%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R + +AK L G+KA Y+A + H + K++V+VAT+AFGMG
Sbjct: 336 IIYCLSRNDCEKVAKALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQVIVATVAFGMG 395
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IH+ P+S+E YYQE+GRAGRDG A C+LY L+ + Q +
Sbjct: 396 IDKPNVRFVIHHSLPKSIENYYQESGRAGRDGQPATCILYYRLAD---IFKQSSMVQQER 452
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL-CDVCVDG-------PPEMKN 687
+ L + RY ++S CR L E+F E + CQ CD C +G E +
Sbjct: 453 TGIQNLYNMVRYAADSSTCRRVKLAEHFEEAWEPSWCQKQCDTCENGNGFVGTSSKESTD 512
Query: 688 LKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLAT 747
+ E A +++I E NS D G +G K + + + K+ S+ RE +K +
Sbjct: 513 VSEAAKTTVRII---EEHLNSAKDGSGRITGNKLVELLTK---KLKGSRNREFCEKLIVN 566
Query: 748 DLL 750
LL
Sbjct: 567 LLL 569
Score = 45 (20.9 bits), Expect = 3.4e-29, Sum P(2) = 3.4e-29
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 367 RPNLRFSVKHSKTSSRASYKKD 388
+PN+RF + HS S +Y ++
Sbjct: 398 KPNVRFVIHHSLPKSIENYYQE 419
>DICTYBASE|DDB_G0292130 [details] [associations]
symbol:blm "Bloom syndrome protein" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA;ISS] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
dictyBase:DDB_G0292130 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000155_GR EMBL:AAFI02000187 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
RefSeq:XP_629849.1 ProteinModelPortal:Q54DM3 STRING:Q54DM3
EnsemblProtists:DDB0233082 GeneID:8628529 KEGG:ddi:DDB_G0292130
InParanoid:Q54DM3 OMA:IANCEAS ProtClustDB:CLSZ2846594
Uniprot:Q54DM3
Length = 1259
Score = 369 (135.0 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 92/231 (39%), Positives = 129/231 (55%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W K+ + + FG + Q+E +++ L +D VL TG GKSLC+QIPAL +
Sbjct: 510 WSQKIIDINRSMFGFHVFRENQREIINSTLEGNDTFVLMPTGGGKSLCYQIPALYQKGLT 569
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSG-QPDNKVE-QKALRG---MYSIIYVCPETV 271
+VISPLISL++DQ L G A L S D ++ K +R ++Y+ PE V
Sbjct: 570 IVISPLISLINDQVEFLETLGYPAAALSSAVSSDAAIDVYKDIRSNSPKIRLLYLTPERV 629
Query: 272 IR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
++ LI+ L L + + IDE HCVS+WGHDFRPDY+ LS+LR F
Sbjct: 630 VKSDSLIEILANLDQKGLFSRIVIDEAHCVSQWGHDFRPDYKELSILRRKFPK------- 682
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV-KHSK 378
+P++ALTATAT +VR D++ +L M F SF RPNL + V K +K
Sbjct: 683 --VPILALTATATERVRNDVIYNLSMRNPVCFK-QSFNRPNLIYQVLKKTK 730
Score = 321 (118.1 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 73/222 (32%), Positives = 125/222 (56%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y ++ + ++AK L + AA Y+A L + +V + + +++V+VATIAFGMG
Sbjct: 750 IVYCISKYDCENVAKRLRELKISAAHYHAGLENDERAKVQANWQKGRIKVIVATIAFGMG 809
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN--------LSSMPTLLPS 627
I+K +VR +IH+ P+SLE YYQE+GRAGRDG ++ C+LY + L +
Sbjct: 810 INKADVRFVIHHSVPKSLEGYYQESGRAGRDGGISHCLLYFSWADKLRNDLLIQNSFTSG 869
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ-LCDVCVDG-PPEM 685
+ S T++ L+ Y N + CR ++ + YFGE+F C+ CD C+
Sbjct: 870 QGSSHNTRETRDSLNKMVNYCENETDCRRQLQLAYFGENFEKSGCKKTCDNCISTLETTR 929
Query: 686 KNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDR 727
K++ EE+ L++ I A ++++ D I+ G K +K +++
Sbjct: 930 KDVTEESKNLVKTIKALGSDTSNLIID--IFKGSKGKKVLEK 969
Score = 37 (18.1 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 18/73 (24%), Positives = 29/73 (39%)
Query: 659 LVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQS-NSMDD--DDGI 715
L+E E + + + D+ P +K LK + Q I Y + +++D D
Sbjct: 1101 LIENIQETYIFSRDTIDDILRVKPKTIKELKGLTGLPSQKIDRYGKSIIQAINDFLSDTP 1160
Query: 716 YSGIKKQKFMDRP 728
YS K F P
Sbjct: 1161 YS-FDKSSFQKIP 1172
>MGI|MGI:109635 [details] [associations]
symbol:Wrn "Werner syndrome homolog (human)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000403
"Y-form DNA binding" evidence=ISO] [GO:0000405 "bubble DNA binding"
evidence=ISO] [GO:0000723 "telomere maintenance"
evidence=ISO;IGI;IMP] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=ISO] [GO:0001302 "replicative cell aging"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003678 "DNA helicase
activity" evidence=ISO] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=ISO]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=ISO;IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006259 "DNA metabolic process" evidence=ISO;IMP] [GO:0006260
"DNA replication" evidence=ISO;IMP] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=ISO] [GO:0006979 "response to oxidative
stress" evidence=ISO] [GO:0007569 "cell aging" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO;IDA] [GO:0009267 "cellular
response to starvation" evidence=ISO] [GO:0009378 "four-way
junction helicase activity" evidence=ISO] [GO:0010225 "response to
UV-C" evidence=ISO] [GO:0010259 "multicellular organismal aging"
evidence=ISO;IGI] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030145 "manganese
ion binding" evidence=ISO] [GO:0031297 "replication fork
processing" evidence=ISO] [GO:0032066 "nucleolus to nucleoplasm
transport" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0040009 "regulation of growth rate" evidence=IMP] [GO:0042803
"protein homodimerization activity" evidence=ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0043138 "3'-5'
DNA helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IEA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051345 "positive regulation of hydrolase
activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] [GO:0071480 "cellular response to gamma radiation"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00474 SMART:SM00490 SMART:SM00956 MGI:MGI:109635
GO:GO:0005524 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145 GO:GO:0006310
GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408
GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000723 eggNOG:COG0514
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0032066 KO:K10900 CTD:7486
HOGENOM:HOG000146447 HOVERGEN:HBG000325 OMA:GIEGDQW
OrthoDB:EOG4DNF3J EMBL:D86527 EMBL:D86526 EMBL:AF091215
EMBL:AF091216 EMBL:AF241636 EMBL:AC153789 EMBL:AC115809
EMBL:BC050921 EMBL:BC060700 IPI:IPI00113830 PIR:T17452 PIR:T30247
RefSeq:NP_001116294.1 RefSeq:NP_035851.3 UniGene:Mm.228805 PDB:2E6L
PDB:2E6M PDBsum:2E6L PDBsum:2E6M ProteinModelPortal:O09053
SMR:O09053 DIP:DIP-27642N STRING:O09053 PhosphoSite:O09053
PaxDb:O09053 PRIDE:O09053 Ensembl:ENSMUST00000033990
Ensembl:ENSMUST00000033991 GeneID:22427 KEGG:mmu:22427
InParanoid:Q80YP9 EvolutionaryTrace:O09053 NextBio:302865
Bgee:O09053 CleanEx:MM_WRN Genevestigator:O09053
GermOnline:ENSMUSG00000031583 Uniprot:O09053
Length = 1401
Score = 412 (150.1 bits), Expect = 2.6e-58, Sum P(3) = 2.6e-58
Identities = 99/226 (43%), Positives = 131/226 (57%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + TGK+ +VISPLI
Sbjct: 504 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLI 563
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L V AC LGS Q N + L G Y +IY+ PE + LQ+L
Sbjct: 564 SLMEDQVLQLELSNVPACLLGSAQSKNILGDVKL-GKYRVIYITPEFCSGNLDLLQQLDS 622
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
S GI L A+DE HC+S+WGHDFR +R L L+ +L +P++AL+ATA+
Sbjct: 623 SIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKT--------ALPL-VPVIALSATASSS 673
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDF 389
+REDI+ L++ K + T F RPNL V KT + K F
Sbjct: 674 IREDIISCLNL-KDPQITCTGFDRPNLYLEVGR-KTGNILQDLKPF 717
Score = 278 (102.9 bits), Expect = 2.6e-58, Sum P(3) = 2.6e-58
Identities = 84/275 (30%), Positives = 137/275 (49%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S+ + VH F ++++ VVAT+A
Sbjct: 729 EGPTIIYCPSRKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVA 788
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C L A+ ++ LL
Sbjct: 789 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLIEI 848
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEM-KN 687
E +M+ +Y +++S CR +I++ +F ED +K L D+ G + N
Sbjct: 849 HDEKFRLYKLKMMVKMEKY-LHSSQCRRRIILSHF-EDKCLQKASL-DIM--GTEKCCDN 903
Query: 688 LKEEANILMQVIAAYNEQSNSMDDDDGIYS-----GIKKQKF-MDRPNLKMFVSKIREQS 741
+ N + A N + S D + I ++KF + P L + S +
Sbjct: 904 CRPRLN---HCLTANNSEDASQDFGPQAFQLLSAVDILQEKFGIGIPILFLRGSNSQRLP 960
Query: 742 QKYLATDLL---------WWRGLARIMENKGYIRE 767
KY L WW+ L+ + +G++ E
Sbjct: 961 DKYRGHRLFGAGKEQAESWWKTLSHHLIAEGFLVE 995
Score = 41 (19.5 bits), Expect = 2.6e-58, Sum P(3) = 2.6e-58
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 128 SYPGMDCNLKAESDSLAVSCPKEVEIGSDW 157
SY DC+ +E S+ +S V +W
Sbjct: 50 SYEASDCSFLSEDISMRLSDGDVVGFDMEW 79
>UNIPROTKB|P46063 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0003678 "DNA helicase activity"
evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA;TAS]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310 GO:GO:0004003
EMBL:CH471094 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733
EMBL:AC006559 KO:K10899 OMA:ESSQTCH HOGENOM:HOG000044388
EMBL:L36140 EMBL:D37984 EMBL:BT007119 EMBL:AK291627 EMBL:BC001052
IPI:IPI00178431 PIR:A58836 RefSeq:NP_002898.2 RefSeq:NP_116559.1
UniGene:Hs.235069 PDB:2V1X PDB:2WWY PDBsum:2V1X PDBsum:2WWY
ProteinModelPortal:P46063 SMR:P46063 DIP:DIP-29216N IntAct:P46063
STRING:P46063 PhosphoSite:P46063 DMDM:218512113 PaxDb:P46063
PRIDE:P46063 DNASU:5965 Ensembl:ENST00000421138
Ensembl:ENST00000444129 GeneID:5965 KEGG:hsa:5965 UCSC:uc001rex.3
CTD:5965 GeneCards:GC12M021621 H-InvDB:HIX0010478 HGNC:HGNC:9948
HPA:CAB009743 HPA:HPA030960 MIM:600537 neXtProt:NX_P46063
PharmGKB:PA34315 HOVERGEN:HBG057654 InParanoid:P46063
PhylomeDB:P46063 ChEMBL:CHEMBL1293236 ChiTaRS:RECQL
EvolutionaryTrace:P46063 GenomeRNAi:5965 NextBio:23220
ArrayExpress:P46063 Bgee:P46063 CleanEx:HS_RECQL
Genevestigator:P46063 GermOnline:ENSG00000004700 Uniprot:P46063
Length = 649
Score = 354 (129.7 bits), Expect = 4.2e-58, Sum P(2) = 4.2e-58
Identities = 94/282 (33%), Positives = 138/282 (48%)
Query: 121 IVEEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKE 180
+ ++ K+ D E DS + KE W KV +L+ F + Q E
Sbjct: 42 LTKKIKQCLEDSDAGASNEYDSSPAAWNKE---DFPWSGKVKDILQNVFKLEKFRPLQLE 98
Query: 181 ALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTA 240
++ +A + ++ TG GKSLC+Q+PAL + +VI PLISLM DQ L + G++A
Sbjct: 99 TINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISA 158
Query: 241 CFLGSGQPDNKV-----EQKALRGMYSIIYVCPETVIR---LIKPLQRLAESRGIALFAI 292
L + V E +IYV PE + + + L++ E+R A+
Sbjct: 159 TMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAV 218
Query: 293 DEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSL 352
DEVHC S+WGHDFRPDY+ L +L+ F + L+ LTATAT V D K L
Sbjct: 219 DEVHCCSQWGHDFRPDYKALGILKRQFP---------NASLIGLTATATNHVLTDAQKIL 269
Query: 353 HMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLID 394
+ K F SF RPNL + V+ K S+ + +D +LI+
Sbjct: 270 CIEKCFTFT-ASFNRPNLYYEVRQ-KPSNTEDFIEDIVKLIN 309
Score = 319 (117.4 bits), Expect = 4.2e-58, Sum P(2) = 4.2e-58
Identities = 72/197 (36%), Positives = 113/197 (57%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY ++K++ + L G+ A AY+A+L VH ++ N+++VVVAT+AFGMG
Sbjct: 318 IIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMG 377
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR +IH+ +S+E YYQE+GRAGRD ADC+LY + + E+ +
Sbjct: 378 IDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMENVGQ 437
Query: 636 QA-YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-QLCD-VCVDGPPEMKNLKEEA 692
Q Y M+S C N S CR ++ ++F E ++ E C ++CD C D E KN+ E
Sbjct: 438 QKLYEMVSYC----QNISKCRRVLMAQHFDEVWNSEACNKMCDNCCKDSAFERKNITEYC 493
Query: 693 NILMQVIAAYNEQSNSM 709
L++++ E + +
Sbjct: 494 RDLIKILKQAEELNEKL 510
Score = 45 (20.9 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 367 RPNLRFSVKHSKTSSRASYKKD 388
+P++RF + HS + S +Y ++
Sbjct: 380 KPDVRFVIHHSMSKSMENYYQE 401
>UNIPROTKB|E1BEE6 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
"MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0030145 "manganese ion binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:DAAA02060458
EMBL:DAAA02060459 EMBL:DAAA02060460 EMBL:DAAA02060461
EMBL:DAAA02060462 EMBL:DAAA02060463 EMBL:DAAA02060464
EMBL:DAAA02060465 EMBL:DAAA02060466 EMBL:DAAA02060467
EMBL:DAAA02060468 EMBL:DAAA02060469 EMBL:DAAA02060470
EMBL:DAAA02060471 EMBL:DAAA02060472 EMBL:DAAA02060473
EMBL:DAAA02060474 EMBL:DAAA02060475 EMBL:DAAA02060476
EMBL:DAAA02060477 EMBL:DAAA02060478 EMBL:DAAA02060479
EMBL:DAAA02060480 EMBL:DAAA02060481 EMBL:DAAA02060482
EMBL:DAAA02060483 EMBL:DAAA02060484 EMBL:DAAA02060485
EMBL:DAAA02060486 EMBL:DAAA02060487 EMBL:DAAA02060488
EMBL:DAAA02060489 EMBL:DAAA02060490 EMBL:DAAA02060491
EMBL:DAAA02060492 EMBL:DAAA02060493 EMBL:DAAA02060494
IPI:IPI00920936 Ensembl:ENSBTAT00000028778 Uniprot:E1BEE6
Length = 1404
Score = 409 (149.0 bits), Expect = 4.6e-58, Sum P(3) = 4.6e-58
Identities = 105/256 (41%), Positives = 141/256 (55%)
Query: 139 ESDSLAVSCPKEVE----IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHH-DCLV 193
E ++ AV KE + + E ++N L K +FGHSS K Q + + + L D +V
Sbjct: 477 EDENEAVEEEKEADEDCLLPRPTEKQINCL-KTYFGHSSFKPVQWKVIHSVLEERRDNVV 535
Query: 194 LAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVE 253
+ TG GKSLCFQ P + G + +VISPLISLM DQ +L + ACFLGS Q N VE
Sbjct: 536 VMTTGYGKSLCFQYPPVYAGGIGLVISPLISLMEDQVLQLEISSIPACFLGSAQSKNVVE 595
Query: 254 QKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLS 313
L G Y I+Y+ PE ++ L++L + GI L A+DE HC+S+WGHDFR +R L
Sbjct: 596 DIKL-GKYRIVYLTPEFCSGNLELLRQLEANIGITLIAVDEAHCISEWGHDFRNSFRDLG 654
Query: 314 VLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFS 373
L+ F +P++ALTATA VREDI+ L++ K + T F RPNL
Sbjct: 655 CLKAEFPK---------VPIVALTATAGSSVREDIVCCLNL-KDPQITCTGFDRPNLYLE 704
Query: 374 VKHSKTSSRASYKKDF 389
V KT K F
Sbjct: 705 VGR-KTGDILQDLKQF 719
Score = 275 (101.9 bits), Expect = 4.6e-58, Sum P(3) = 4.6e-58
Identities = 61/158 (38%), Positives = 98/158 (62%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A L + ++VH F ++++ V+AT+A
Sbjct: 731 EGPTIIYCPSRKMTEQVTAELKKLKLACGTYHAGLSINLRKQVHHRFMRDEIQCVIATVA 790
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYA--NLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+A +++ LL
Sbjct: 791 FGMGINKADIRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADMNLNRCLLSEI 850
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGED 666
R+E +M+ +Y + +S CR +I++ +F ED
Sbjct: 851 RNEKFRLYKLKMMGKMEKY-LYSSKCRRQIILSHF-ED 886
Score = 45 (20.9 bits), Expect = 4.6e-58, Sum P(3) = 4.6e-58
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 128 SYPGMDCNLKAESDSLAVSCPKEVEIGSDW 157
SY DC+L +E S+++S V +W
Sbjct: 54 SYEANDCSLLSEDISMSLSDGDVVGFDIEW 83
>MGI|MGI:103021 [details] [associations]
symbol:Recql "RecQ protein-like" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
SMART:SM00490 MGI:MGI:103021 GO:GO:0005524 GO:GO:0005634
GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0000733 EMBL:CH466572 KO:K10899 OMA:ESSQTCH
HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 EMBL:AB017104
EMBL:AB017105 EMBL:AK137589 EMBL:AK164344 IPI:IPI00129401
IPI:IPI00230278 RefSeq:NP_001191836.1 RefSeq:NP_075529.2
UniGene:Mm.27407 ProteinModelPortal:Q9Z129 SMR:Q9Z129 STRING:Q9Z129
PhosphoSite:Q9Z129 PaxDb:Q9Z129 PRIDE:Q9Z129
Ensembl:ENSMUST00000032370 Ensembl:ENSMUST00000111803 GeneID:19691
KEGG:mmu:19691 InParanoid:Q3TPI5 OrthoDB:EOG4THVSK NextBio:297024
Bgee:Q9Z129 CleanEx:MM_RECQL Genevestigator:Q9Z129
GermOnline:ENSMUSG00000030243 Uniprot:Q9Z129
Length = 648
Score = 358 (131.1 bits), Expect = 4.7e-58, Sum P(2) = 4.7e-58
Identities = 89/246 (36%), Positives = 128/246 (52%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W KV +L+ F + Q E ++ +A D ++ TG GKSLC+Q+PAL +
Sbjct: 75 WFGKVKDVLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSDGFT 134
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETV 271
+VI PLISLM DQ L + G++A L + V E +IYV PE +
Sbjct: 135 LVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTPEKI 194
Query: 272 IR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
+ + L++ E+ + A+DEVHC S+WGHDFRPDY+ L +L+ F
Sbjct: 195 AKSKMFMSRLEKAYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQFP-------- 246
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKD 388
+ LM LTATAT V +D+ K L + K F SF RPNL + V+ K SS + +D
Sbjct: 247 -NASLMGLTATATNHVLKDVQKILCVGKCLTFT-ASFNRPNLFYEVRQ-KPSSAEDFTED 303
Query: 389 FCQLID 394
+LI+
Sbjct: 304 IVKLIN 309
Score = 314 (115.6 bits), Expect = 4.7e-58, Sum P(2) = 4.7e-58
Identities = 70/187 (37%), Positives = 111/187 (59%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY ++K++ I L G+ A Y+A++ +VHT++ N+L+VVVAT+AFGMG
Sbjct: 318 IIYCFSQKDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVATVAFGMG 377
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR +IH+ +S+E YYQE+GRAGRD ADC+LY + + E+ +
Sbjct: 378 IDKPDVRFVIHHSMSKSMENYYQESGRAGRDDSRADCILYYGFGDIFRISSMVVMENVGQ 437
Query: 636 QA-YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-QLCD-VCVDGPPEMKNLKEEA 692
Q Y M+S C N S CR ++ ++F E ++ + C ++CD C D E KN+ +
Sbjct: 438 QKLYEMVSYC----QNVSKCRRVLIAQHFDEVWNADACNKMCDNCCKDVSFEKKNVTQHC 493
Query: 693 NILMQVI 699
L++++
Sbjct: 494 RDLIKIL 500
>UNIPROTKB|I3LC91 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
"MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0030145 "manganese ion binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:FP102088 EMBL:FP565873
Ensembl:ENSSSCT00000022344 Uniprot:I3LC91
Length = 1507
Score = 409 (149.0 bits), Expect = 5.1e-58, Sum P(3) = 5.1e-58
Identities = 105/257 (40%), Positives = 140/257 (54%)
Query: 139 ESDSLAVSCPKEVEIGSDW-----EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHH-DCL 192
E ++ AV +E E D+ K + LK +FGHSS K Q + + + L D +
Sbjct: 576 EDENEAVVEEEEEEESKDYLLPEPTAKQINCLKTYFGHSSFKPVQWKVIHSILEERRDNV 635
Query: 193 VLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV 252
V+ ATG GKSLCFQ P + G + +VISPLISLM DQ +L + ACFLGS Q N +
Sbjct: 636 VVMATGYGKSLCFQYPPVSVGGIGLVISPLISLMEDQVLQLEMSNIPACFLGSAQSKNVL 695
Query: 253 EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312
E L G Y I+Y+ PE + LQ L + GI + A+DE HC+S+WGHDFR +R L
Sbjct: 696 EDIKL-GKYRIVYLTPEFCSGNLDLLQHLEANIGITVIAVDEAHCISEWGHDFRNSFRTL 754
Query: 313 SVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRF 372
+LKS +P++ALTAT T +REDI++ L + K + T F RPNL
Sbjct: 755 G---------SLKSALPLVPIVALTATGTSSIREDIVRCLKL-KDPQITCTGFDRPNLYL 804
Query: 373 SVKHSKTSSRASYKKDF 389
V KT K F
Sbjct: 805 EVGR-KTGDILQDLKQF 820
Score = 274 (101.5 bits), Expect = 5.1e-58, Sum P(3) = 5.1e-58
Identities = 62/166 (37%), Positives = 102/166 (61%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A L ++VH +F ++++ V+ATIA
Sbjct: 832 EGPTIIYCPSRKMTEQVTAELKKLKLACETYHAGLSIHLRKQVHHKFMRDEIQCVIATIA 891
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYA--NLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C +L+A +++ LL
Sbjct: 892 FGMGINKADIRKVIHYGAPKEIESYYQEIGRAGRDGLQSSCHILWAPADINLNRHLLSEI 951
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL 674
+E+ +M++ +Y +++S CR +I++ +F ED K L
Sbjct: 952 CNENFRLYKLKMMAKMEKY-LHSSRCRRQIILSHF-EDKQLRKASL 995
Score = 47 (21.6 bits), Expect = 5.1e-58, Sum P(3) = 5.1e-58
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 128 SYPGMDCNLKAESDSLAVSCPKEVEIGSDW 157
SY DC+ +E SL++S V +W
Sbjct: 56 SYEASDCSFLSEDISLSLSSGDVVGFDMEW 85
Score = 39 (18.8 bits), Expect = 3.5e-57, Sum P(3) = 3.5e-57
Identities = 15/69 (21%), Positives = 31/69 (44%)
Query: 23 SDITEAVETVGPSFNDAIEYILNGSVRNSKGKSVSWSSKCVTENGKTLGKRTL-SSANSL 81
SD+ + + ++ D +++ + + + VS K ++EN +L K S+ N L
Sbjct: 248 SDVKKQLTSISEEMMDLAKHLPDTFGKLESPQRVSMLLKDISENLCSLRKMIFGSTGNEL 307
Query: 82 GQMRQASLL 90
+ LL
Sbjct: 308 SPISSFHLL 316
Score = 37 (18.1 bits), Expect = 5.7e-57, Sum P(3) = 5.7e-57
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 17 EMGFD-DSDITEAVETVGPSFNDAIEYILNGSVRNSKGKSVS 57
E G + D+++ E E V D EY L + +K K++S
Sbjct: 372 ETGLEEDNELKENTERVCLMSLDITEYELQLLEQEAKEKNLS 413
>UNIPROTKB|F1PNP1 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 KO:K10899 OMA:ESSQTCH CTD:5965 EMBL:AAEX03015200
RefSeq:XP_543768.1 Ensembl:ENSCAFT00000019449 GeneID:486641
KEGG:cfa:486641 Uniprot:F1PNP1
Length = 646
Score = 359 (131.4 bits), Expect = 5.7e-58, Sum P(2) = 5.7e-58
Identities = 95/277 (34%), Positives = 136/277 (49%)
Query: 126 KESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAW 185
K+ D +ESDS + KE W KV +L+ F + Q E ++
Sbjct: 47 KQHLEASDVGESSESDSSPAAWNKE---DFPWSSKVKDVLQNIFKLQRFRLLQLETINVT 103
Query: 186 LAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGS 245
++ D ++ TG GKSLC+Q+PAL + +VI PLISLM DQ L + G++A L +
Sbjct: 104 MSGKDVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNA 163
Query: 246 GQPDNKV-----EQKALRGMYSIIYVCPETVIR---LIKPLQRLAESRGIALFAIDEVHC 297
V E +IYV PE + + + L++ E+R A+DEVHC
Sbjct: 164 SSSKEHVKWVHAEMINKNSKLKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHC 223
Query: 298 VSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKG 357
S WGHDFRPDY+ L +L+ F + LM LTATAT V +D K L + K
Sbjct: 224 CSHWGHDFRPDYKALGILKRQFP---------NTALMGLTATATSHVLKDAQKILCVGKC 274
Query: 358 TKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLID 394
F SF RPNL + ++ K S+ +D +LI+
Sbjct: 275 FTFT-ASFNRPNLYYEIRQ-KPSNTEDVIEDIVKLIN 309
Score = 312 (114.9 bits), Expect = 5.7e-58, Sum P(2) = 5.7e-58
Identities = 71/187 (37%), Positives = 110/187 (58%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY ++K++ + L G++A AY+A++ RVH + N+++VVVAT+AFGMG
Sbjct: 318 IIYCFSQKDSEQVTVSLQKLGIQAGAYHANMEPEDKTRVHRRWSANEIQVVVATVAFGMG 377
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR IIH+ +S+E YYQE+GRAGRD ADC+LY + + E+ +
Sbjct: 378 IDKPDVRFIIHHSMSKSIENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMENVGQ 437
Query: 636 QA-YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-QLCD-VCVDGPPEMKNLKEEA 692
Q Y M+S C N S CR ++ ++F E ++ E C ++CD C D E KN+
Sbjct: 438 QKLYEMVSYC----QNISKCRRVLIAQHFDEVWNAEACNRMCDNCCKDISCERKNVTAHC 493
Query: 693 NILMQVI 699
L++++
Sbjct: 494 RDLVKIL 500
>GENEDB_PFALCIPARUM|PF14_0278 [details] [associations]
symbol:PF14_0278 "ATP-dependent DNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
Uniprot:Q8ILG5
Length = 1440
Score = 420 (152.9 bits), Expect = 6.1e-58, Sum P(3) = 6.1e-58
Identities = 99/227 (43%), Positives = 140/227 (61%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT---GKV 215
+K+ KKHFG+ +LK+FQ EA+ A D ++ ATG GKSLC+QIP+L+ K
Sbjct: 37 MKMEITQKKHFGYKNLKDFQVEAVHATFHKKDSFIVMATGMGKSLCYQIPSLMDVCRKKF 96
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSGQP--DNKVEQKALRGMYSIIYVCPETVIR 273
+VISPLISLM DQ L++ +++ FLGSGQ +NK+ + G+Y I+Y PE +
Sbjct: 97 TIVISPLISLMKDQVDNLNRKRISSVFLGSGQKMNNNKILNEIKHGIYKIVYCSPEYALN 156
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
K + L ++R I L AIDEVHC+S+WGHDFRP YR+L N L+ + +IP+
Sbjct: 157 N-KDVFILLKNR-ILLIAIDEVHCMSEWGHDFRPSYRKL---------NELRIILKEIPI 205
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVL-TSFFRPNLRFSVKHSKT 379
M LTAT T V+ DILK+L+ + +S + NL +SV+ KT
Sbjct: 206 MCLTATCTKNVQSDILKNLNFDLQNCLIKRSSVNKKNLFYSVRE-KT 251
Score = 264 (98.0 bits), Expect = 6.1e-58, Sum P(3) = 6.1e-58
Identities = 58/162 (35%), Positives = 96/162 (59%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
T+IYV ++KE S+ +L G+ Y+A L Q + H +F +++++++VAT+AFGM
Sbjct: 287 TLIYVNSKKECESVYSFLKEKGLLVLMYHADLTNDQKKEAHEKFLKDEIQIIVATVAFGM 346
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL---SSMPTLLPSRRSE 631
GIDK ++RRIIHYG+ +SLEAY Q+ GRAGRD A+ +L+ ++ S + ++ +
Sbjct: 347 GIDKPDIRRIIHYGFARSLEAYVQQVGRAGRDNSDAEAILFFHINDESKIKNIILRENTA 406
Query: 632 D--------QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGE 665
+ + + + + Y +T+C R KI EYF E
Sbjct: 407 NNLIETNFQRVEHIVHIFTQASDYAYSTACRRKKIY-EYFDE 447
Score = 43 (20.2 bits), Expect = 6.1e-58, Sum P(3) = 6.1e-58
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 751 WWRGLARIMENKGYIRE 767
WW +++ N +I+E
Sbjct: 626 WWSSFMKVVRNDKFIKE 642
Score = 42 (19.8 bits), Expect = 6.6e-35, Sum P(2) = 6.6e-35
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 435 NIGDGYYDDEDV 446
NI D YY+D+DV
Sbjct: 770 NIRDIYYNDKDV 781
Score = 40 (19.1 bits), Expect = 1.3e-57, Sum P(3) = 1.3e-57
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 686 KNLKEEANILMQVIAAYNEQSNSMDDDD 713
K K E NI + YN+ N D+D+
Sbjct: 705 KETKYE-NITYEYKDKYNDNDNDKDNDN 731
>UNIPROTKB|Q8ILG5 [details] [associations]
symbol:PF14_0278 "ATP-dependent DNA helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
Uniprot:Q8ILG5
Length = 1440
Score = 420 (152.9 bits), Expect = 6.1e-58, Sum P(3) = 6.1e-58
Identities = 99/227 (43%), Positives = 140/227 (61%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT---GKV 215
+K+ KKHFG+ +LK+FQ EA+ A D ++ ATG GKSLC+QIP+L+ K
Sbjct: 37 MKMEITQKKHFGYKNLKDFQVEAVHATFHKKDSFIVMATGMGKSLCYQIPSLMDVCRKKF 96
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSGQP--DNKVEQKALRGMYSIIYVCPETVIR 273
+VISPLISLM DQ L++ +++ FLGSGQ +NK+ + G+Y I+Y PE +
Sbjct: 97 TIVISPLISLMKDQVDNLNRKRISSVFLGSGQKMNNNKILNEIKHGIYKIVYCSPEYALN 156
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
K + L ++R I L AIDEVHC+S+WGHDFRP YR+L N L+ + +IP+
Sbjct: 157 N-KDVFILLKNR-ILLIAIDEVHCMSEWGHDFRPSYRKL---------NELRIILKEIPI 205
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVL-TSFFRPNLRFSVKHSKT 379
M LTAT T V+ DILK+L+ + +S + NL +SV+ KT
Sbjct: 206 MCLTATCTKNVQSDILKNLNFDLQNCLIKRSSVNKKNLFYSVRE-KT 251
Score = 264 (98.0 bits), Expect = 6.1e-58, Sum P(3) = 6.1e-58
Identities = 58/162 (35%), Positives = 96/162 (59%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
T+IYV ++KE S+ +L G+ Y+A L Q + H +F +++++++VAT+AFGM
Sbjct: 287 TLIYVNSKKECESVYSFLKEKGLLVLMYHADLTNDQKKEAHEKFLKDEIQIIVATVAFGM 346
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL---SSMPTLLPSRRSE 631
GIDK ++RRIIHYG+ +SLEAY Q+ GRAGRD A+ +L+ ++ S + ++ +
Sbjct: 347 GIDKPDIRRIIHYGFARSLEAYVQQVGRAGRDNSDAEAILFFHINDESKIKNIILRENTA 406
Query: 632 D--------QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGE 665
+ + + + + Y +T+C R KI EYF E
Sbjct: 407 NNLIETNFQRVEHIVHIFTQASDYAYSTACRRKKIY-EYFDE 447
Score = 43 (20.2 bits), Expect = 6.1e-58, Sum P(3) = 6.1e-58
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 751 WWRGLARIMENKGYIRE 767
WW +++ N +I+E
Sbjct: 626 WWSSFMKVVRNDKFIKE 642
Score = 42 (19.8 bits), Expect = 6.6e-35, Sum P(2) = 6.6e-35
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 435 NIGDGYYDDEDV 446
NI D YY+D+DV
Sbjct: 770 NIRDIYYNDKDV 781
Score = 40 (19.1 bits), Expect = 1.3e-57, Sum P(3) = 1.3e-57
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 686 KNLKEEANILMQVIAAYNEQSNSMDDDD 713
K K E NI + YN+ N D+D+
Sbjct: 705 KETKYE-NITYEYKDKYNDNDNDKDNDN 731
>UNIPROTKB|F1RX70 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:FP102088 EMBL:FP565873
Ensembl:ENSSSCT00000017248 Uniprot:F1RX70
Length = 1409
Score = 407 (148.3 bits), Expect = 6.4e-58, Sum P(3) = 6.4e-58
Identities = 98/226 (43%), Positives = 128/226 (56%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + G + +VISPLI
Sbjct: 508 LKTYFGHSSFKPVQWKVIHSILEERRDNVVVMATGYGKSLCFQYPPVSVGGIGLVISPLI 567
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q N +E L G Y I+Y+ PE + LQ L
Sbjct: 568 SLMEDQVLQLEMSNIPACFLGSAQSKNVLEDIKL-GKYRIVYLTPEFCSGNLDLLQHLEA 626
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ GI + A+DE HC+S+WGHDFR +R L +LKS +P++ALTAT T
Sbjct: 627 NIGITVIAVDEAHCISEWGHDFRNSFRTLG---------SLKSALPLVPIVALTATGTSS 677
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDF 389
+REDI++ L + K + T F RPNL V KT K F
Sbjct: 678 IREDIVRCLKL-KDPQITCTGFDRPNLYLEVGR-KTGDILQDLKQF 721
Score = 274 (101.5 bits), Expect = 6.4e-58, Sum P(3) = 6.4e-58
Identities = 62/166 (37%), Positives = 102/166 (61%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A L ++VH +F ++++ V+ATIA
Sbjct: 733 EGPTIIYCPSRKMTEQVTAELKKLKLACETYHAGLSIHLRKQVHHKFMRDEIQCVIATIA 792
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYA--NLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C +L+A +++ LL
Sbjct: 793 FGMGINKADIRKVIHYGAPKEIESYYQEIGRAGRDGLQSSCHILWAPADINLNRHLLSEI 852
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL 674
+E+ +M++ +Y +++S CR +I++ +F ED K L
Sbjct: 853 CNENFRLYKLKMMAKMEKY-LHSSRCRRQIILSHF-EDKQLRKASL 896
Score = 47 (21.6 bits), Expect = 6.4e-58, Sum P(3) = 6.4e-58
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 128 SYPGMDCNLKAESDSLAVSCPKEVEIGSDW 157
SY DC+ +E SL++S V +W
Sbjct: 56 SYEASDCSFLSEDISLSLSSGDVVGFDMEW 85
Score = 39 (18.8 bits), Expect = 4.4e-57, Sum P(3) = 4.4e-57
Identities = 15/69 (21%), Positives = 31/69 (44%)
Query: 23 SDITEAVETVGPSFNDAIEYILNGSVRNSKGKSVSWSSKCVTENGKTLGKRTL-SSANSL 81
SD+ + + ++ D +++ + + + VS K ++EN +L K S+ N L
Sbjct: 248 SDVKKQLTSISEEMMDLAKHLPDTFGKLESPQRVSMLLKDISENLCSLRKMIFGSTGNEL 307
Query: 82 GQMRQASLL 90
+ LL
Sbjct: 308 SPISSFHLL 316
Score = 37 (18.1 bits), Expect = 2.4e-18, Sum P(3) = 2.4e-18
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 435 NIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGE-FYGHS 479
N+G +DED + + +E ++L + + C + ++GHS
Sbjct: 471 NLGLPLEEDEDENEAVVEEEEEEDYLLPEPTAK-QINCLKTYFGHS 515
>UNIPROTKB|F1SR01 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA strand
renaturation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0015630 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
OMA:ESSQTCH EMBL:CU633485 EMBL:CU457490 Ensembl:ENSSSCT00000000624
Uniprot:F1SR01
Length = 649
Score = 359 (131.4 bits), Expect = 9.6e-58, Sum P(2) = 9.6e-58
Identities = 97/283 (34%), Positives = 142/283 (50%)
Query: 121 IVEEQ-KESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQK 179
I+E++ K+ D +E DS S KE W KV +L+ F + Q
Sbjct: 41 ILEKRIKQCSEDPDAGESSEYDSSPASWNKE---DFPWSGKVKEVLQNIFKLQKFRPLQL 97
Query: 180 EALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVT 239
E ++ ++ + ++ TG GKSLC+Q+PAL + +VI PLISLM DQ L + G++
Sbjct: 98 ETINVTMSGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGIS 157
Query: 240 ACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETVIR---LIKPLQRLAESRGIALFA 291
A L + V E +IYV PE + + + L++ E+R A
Sbjct: 158 ATMLNASSSKEHVKWVHAEMVNKNSKLKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIA 217
Query: 292 IDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKS 351
IDEVHC S+WGHDFRPDY+ L +L+ F +L + LTATAT V +D K
Sbjct: 218 IDEVHCCSQWGHDFRPDYKALGILKRQFPNTSL---------IGLTATATSHVLKDAQKI 268
Query: 352 LHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLID 394
L + K F SF RPNL + V+ K S+ + +D +LI+
Sbjct: 269 LCVEKCFTFT-ASFNRPNLYYEVRQ-KPSNTEDFIEDIVKLIN 309
Score = 310 (114.2 bits), Expect = 9.6e-58, Sum P(2) = 9.6e-58
Identities = 71/197 (36%), Positives = 112/197 (56%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY ++K++ + L G+ A AY+A++ VH + N+++VVVAT+AFGMG
Sbjct: 318 IIYCFSQKDSEQVTVSLQKLGIHAGAYHANMEPEDKTTVHRRWSANEIQVVVATVAFGMG 377
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR +IH+ +S+E YYQE+GRAGRD ADC+LY + + E+ +
Sbjct: 378 IDKPDVRFVIHHSMSKSMENYYQESGRAGRDDTKADCILYYGFGDIFRISSMVVMENVGQ 437
Query: 636 QA-YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-QLCD-VCVDGPPEMKNLKEEA 692
Q Y M+S C N S CR ++ ++F E +S E+C ++CD C D E KN+
Sbjct: 438 QKLYEMVSYC----QNISKCRRVLIAQHFDEVWSPEECNKMCDNCCKDTSFERKNITAYC 493
Query: 693 NILMQVIAAYNEQSNSM 709
L++++ E + +
Sbjct: 494 RDLVKILKQAEELNEKL 510
Score = 45 (20.9 bits), Expect = 6.6e-30, Sum P(2) = 6.6e-30
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 367 RPNLRFSVKHSKTSSRASYKKD 388
+P++RF + HS + S +Y ++
Sbjct: 380 KPDVRFVIHHSMSKSMENYYQE 401
>WB|WBGene00006944 [details] [associations]
symbol:wrn-1 species:6239 "Caenorhabditis elegans"
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IMP] [GO:0010212
"response to ionizing radiation" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006259 "DNA metabolic
process" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005662 "DNA replication factor A complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0008340 GO:GO:0002009
GO:GO:0040007 GO:GO:0018991 GO:GO:0005694 GO:GO:0005654
GO:GO:0002119 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0010212 GO:GO:0007049 GO:GO:0006310 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K10900 EMBL:FO080970
PIR:T16087 RefSeq:NP_495324.2 ProteinModelPortal:Q19546 SMR:Q19546
IntAct:Q19546 MINT:MINT-226609 STRING:Q19546 PaxDb:Q19546
EnsemblMetazoa:F18C5.2 GeneID:174081 KEGG:cel:CELE_F18C5.2
UCSC:F18C5.2 CTD:174081 WormBase:F18C5.2 HOGENOM:HOG000016918
InParanoid:Q19546 OMA:CSGFDRP NextBio:882429 Uniprot:Q19546
Length = 1056
Score = 370 (135.3 bits), Expect = 1.4e-57, Sum P(2) = 1.4e-57
Identities = 93/217 (42%), Positives = 126/217 (58%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L + FGH + Q + + L D VL +TG GKS+C+Q+P+LL + VV+SPLIS
Sbjct: 219 LNEFFGHKGFREKQWDVVRNVLGGKDQFVLMSTGYGKSVCYQLPSLLLNSMTVVVSPLIS 278
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSI--IYVCPETVIRLIKPLQRLA 282
LM+DQ + L G+ A L + +Q A M+ I IY+ PE V K L+ L
Sbjct: 279 LMNDQVTTLVSKGIDAVKLDGHSTQIEWDQVA-NNMHRIRFIYMSPEMVTSQ-KGLELLT 336
Query: 283 ESRG-IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
R I+L AIDE HCVS+WGHDFR YR L+ +R N L +IP++ALTATAT
Sbjct: 337 SCRKHISLLAIDEAHCVSQWGHDFRNSYRHLAEIR------NRSDL-CNIPMIALTATAT 389
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
++VR+D++ +L + K TSF R NL SV SK
Sbjct: 390 VRVRDDVIANLRLRKPL-ITTTSFDRKNLYISVHSSK 425
Score = 307 (113.1 bits), Expect = 1.4e-57, Sum P(2) = 1.4e-57
Identities = 81/265 (30%), Positives = 139/265 (52%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G TIIY T++ + L GV++A Y+A L K+Q + HT+F +K+ +VAT+AF
Sbjct: 447 GPTIIYCQTKQMVDDVNCVLRRIGVRSAHYHAGLTKNQREKAHTDFMRDKITTIVATVAF 506
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYA--NLSSMPTLLPSRR 629
GMGIDK +VR +IHYG P ++E+YYQE GRAGRDG + C V +A +L+++ L + +
Sbjct: 507 GMGIDKPDVRNVIHYGCPNNIESYYQEIGRAGRDGSPSICRVFWAPKDLNTIKFKLRNSQ 566
Query: 630 SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLK 689
+++ + M+ + T CR L+++F ++ D C D EM N
Sbjct: 567 QKEEVVENLTMMLRQLELVLTTVGCRRYQLLKHFDPSYAKPPTMQADCC-DRCTEMLNGN 625
Query: 690 EEANILMQVIAAYNEQSNSMDDDDGIYSG---IKKQ-KFMDRPNLKMFVSKIREQSQKY- 744
++++ ++ E + +Y+G I K +F+ + + + K Q + +
Sbjct: 626 QDSS--SSIVDVTTESKWLFQVINEMYNGKTGIGKPIEFLRGSSKEDWRIKTTSQQKLFG 683
Query: 745 LATDL--LWWRGLARIMENKGYIRE 767
+ + WW+ LA + GY+ E
Sbjct: 684 IGKHIPDKWWKALAASLRIAGYLGE 708
Score = 47 (21.6 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 292 IDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
IDE + KW P L+ L E FG + ++D+
Sbjct: 197 IDEATKM-KWASMTSPPQEALNALNEFFGHKGFREKQWDV 235
Score = 45 (20.9 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 447 GNSPMGKEMSVEFLENDSVDDWDV 470
G + +GK +EFL S +DW +
Sbjct: 652 GKTGIGKP--IEFLRGSSKEDWRI 673
Score = 41 (19.5 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 471 ACGEFYGHSPHRDRDTD 487
A EF+GH R++ D
Sbjct: 218 ALNEFFGHKGFREKQWD 234
Score = 37 (18.1 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 499 PAERLSMLQEPLEDGLTIIY 518
P E +S +Q+ L D + +Y
Sbjct: 896 PPELISKMQKVLSDAVRRVY 915
>TAIR|locus:2074429 [details] [associations]
symbol:RECQI1 "RECQ helicase l1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0042631 "cellular response to water deprivation" evidence=IEP]
[GO:0070417 "cellular response to cold" evidence=IEP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
GO:GO:0070417 GO:GO:0042631 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AC012393 eggNOG:COG0514 KO:K10901
TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388
EMBL:AJ404470 IPI:IPI00524157 RefSeq:NP_187225.2 UniGene:At.10170
UniGene:At.49591 ProteinModelPortal:Q9FT74 SMR:Q9FT74
EnsemblPlants:AT3G05740.1 GeneID:819743 KEGG:ath:AT3G05740
TAIR:At3g05740 InParanoid:Q9FT74 OMA:RFVIHNT PhylomeDB:Q9FT74
ProtClustDB:CLSN2690733 Genevestigator:Q9FT74 Uniprot:Q9FT74
Length = 606
Score = 377 (137.8 bits), Expect = 4.8e-57, Sum P(2) = 4.8e-57
Identities = 92/215 (42%), Positives = 126/215 (58%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG+ + Q +A A + DC VL TG GKSLC+Q+PA L V +VISPL+SL+ D
Sbjct: 202 FGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVISPLLSLIQD 261
Query: 229 QCSKLS-KHGVTACFLGSGQPDNK---VEQKALRGMYS--IIYVCPETVIRLIKPLQ--R 280
Q L+ K G+ A FL S Q ++ V Q+ R S ++YV PE + L+ R
Sbjct: 262 QIVALNLKFGIPATFLNSQQTSSQAAAVLQELRRDNPSCKLLYVTPEKIAGSSSFLETLR 321
Query: 281 LAESRGI-ALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ +G+ A F +DE HCVS+WGHDFRPDYR L L++NF +P+MALTAT
Sbjct: 322 CLDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPR---------VPVMALTAT 372
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
AT V +D+LKSL + + + SF R NL++ V
Sbjct: 373 ATESVCQDVLKSLRIPRAPVLKM-SFDRINLKYEV 406
Score = 280 (103.6 bits), Expect = 4.8e-57, Sum P(2) = 4.8e-57
Identities = 78/210 (37%), Positives = 114/210 (54%)
Query: 489 SFERTDL----LNKPAERLSMLQEPLEDGLT----IIYVPTRKETLSIAKYL---CGFGV 537
SF+R +L + K E L LQE L D I+Y ++ E + +AK+L C V
Sbjct: 396 SFDRINLKYEVIVKTKEPLKQLQELLRDRFKDQSGIVYCLSKSECVDVAKFLNEKCK--V 453
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
K Y+A +P Q V ++ ++ +V ATIAFGMGIDK +VR +IH +++E+YY
Sbjct: 454 KTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESYY 513
Query: 598 QEAGRAGRDGHLADCV-LYA--NLSSMPTLLPSR--RSEDQTKQAYRMLSDCFRYGMNTS 652
QE+GRAGRDG A C+ LY + S + +L + R+ D+ K A +Y +
Sbjct: 514 QESGRAGRDGLQAQCICLYQKKDFSRVVCMLRNGQGRNMDRFKSAMAQAKKMQQYCELKT 573
Query: 653 CCRAKILVEYFGEDFSHEKCQL----CDVC 678
CR ++L+EYFGE F C+ CD C
Sbjct: 574 ECRRQMLLEYFGESFDRMICKSSLNPCDNC 603
>UNIPROTKB|O34748 [details] [associations]
symbol:recQ "Probable ATP-dependent DNA helicase RecQ"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 EMBL:AF027868 PIR:F69901 RefSeq:NP_389803.1
ProteinModelPortal:O34748 SMR:O34748
EnsemblBacteria:EBBACT00000001699 GeneID:939671 KEGG:bsu:BSU19220
PATRIC:18975693 GenoList:BSU19220 KO:K03654 OMA:HAAYINS
ProtClustDB:CLSK887416 BioCyc:BSUB:BSU19220-MONOMER
TIGRFAMs:TIGR01389 Uniprot:O34748
Length = 591
Score = 382 (139.5 bits), Expect = 7.3e-57, Sum P(2) = 7.3e-57
Identities = 92/230 (40%), Positives = 129/230 (56%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWL-AHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
+ SLL +FG+ ++ Q EA+ A + + TG GKS+C+QIPAL+ +V
Sbjct: 4 RAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIV 63
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK--ALR-GMYSIIYVCPE--TVIR 273
ISPLISLM DQ L + G+ A ++ S Q + ++ ++ L+ G Y + Y+ PE T I
Sbjct: 64 ISPLISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSIE 123
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP- 332
I+ LQ + + L AIDE HC+S+WGHDFRP YR + +L + L D P
Sbjct: 124 FIRILQGI----DVPLVAIDEAHCISQWGHDFRPSYRNIEIL--------FRELH-DKPV 170
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
+MALTATAT +V +DI K LH+ K V T F R NL F V + R
Sbjct: 171 IMALTATATPEVHDDICKQLHIQKENT-VYTGFSRENLTFKVVKGENKDR 219
Score = 271 (100.5 bits), Expect = 7.3e-57, Sum P(2) = 7.3e-57
Identities = 70/215 (32%), Positives = 110/215 (51%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y TRKE I + L V+A Y+ L + F ++L+V+VAT AFGMG
Sbjct: 234 IVYTATRKEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMG 293
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPSRRSED 632
IDK N+R ++H P+ +E+YYQEAGRAGRDG ++CVL + + L+ E+
Sbjct: 294 IDKSNIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLFSPQDIMVQRFLIEQSEHEE 353
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ KQ + L Y +T C + ++ YFGE + C C C D ++ EA
Sbjct: 354 KQKQDLKKLRQMVDY-CHTEDCLQRFILMYFGEK-EPDACGQCGNCTD-TRAAHDVTREA 410
Query: 693 NILMQVIAAYNEQ-SNSMDDDDGIYSGIKKQKFMD 726
+++ I E+ +M + +G K +K ++
Sbjct: 411 QMVLSCIIRMKERFGKTMVAQ--VLAGSKNKKVLE 443
>UNIPROTKB|A0JN36 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0000733 GO:GO:0008026 KO:K10899 OMA:ESSQTCH
HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 OrthoDB:EOG4THVSK
EMBL:DAAA02014122 EMBL:DAAA02014123 EMBL:BC126495 IPI:IPI00692480
RefSeq:NP_001071459.1 UniGene:Bt.13736 SMR:A0JN36 STRING:A0JN36
Ensembl:ENSBTAT00000028079 GeneID:533006 KEGG:bta:533006
InParanoid:A0JN36 NextBio:20875874 Uniprot:A0JN36
Length = 649
Score = 364 (133.2 bits), Expect = 8.0e-57, Sum P(3) = 8.0e-57
Identities = 94/270 (34%), Positives = 136/270 (50%)
Query: 133 DCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCL 192
D +E DS S KE W KV +L+ F + Q E ++ ++ +
Sbjct: 54 DAGESSECDSSPASWNKE---DFPWSGKVKDVLQNVFKLQKFRPLQLETINVTMSGKEVF 110
Query: 193 VLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV 252
++ TG GKSLC+Q+PAL + +VI PLISLM DQ L + G++A L + P V
Sbjct: 111 LVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSPKEHV 170
Query: 253 -----EQKALRGMYSIIYVCPETVIR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304
E +IYV PE + + + L++ E+R A+DEVHC S+WGHD
Sbjct: 171 KWVHAEMVNKNSKLKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHD 230
Query: 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTS 364
FRPDY+ L +L+ F + L+ LTATAT V +D K L + K F S
Sbjct: 231 FRPDYKALGILKRQFP---------NASLIGLTATATSHVLKDAQKILCVEKCFTFT-AS 280
Query: 365 FFRPNLRFSVKHSKTSSRASYKKDFCQLID 394
F RPNL + V+ K S+ + +D +LI+
Sbjct: 281 FNRPNLYYEVRQ-KPSNTEDFIEDIVKLIN 309
Score = 297 (109.6 bits), Expect = 8.0e-57, Sum P(3) = 8.0e-57
Identities = 68/187 (36%), Positives = 109/187 (58%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY ++K++ + L G+ A AY+A++ +VH + N+++VVVAT+AFGMG
Sbjct: 318 IIYCFSQKDSEQVTISLQKLGIPAGAYHANMEPEDKTKVHRRWAANEIQVVVATVAFGMG 377
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR +IH+ +S+E YYQE+GRAGRD ADC+LY + + E+ +
Sbjct: 378 IDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMENVGQ 437
Query: 636 QA-YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-QLCD-VCVDGPPEMKNLKEEA 692
Q Y M+S C N + CR ++ ++F E +S E C ++CD C + E KN+
Sbjct: 438 QKLYEMVSYC----QNINKCRRVLIAQHFDEVWSPEACNKMCDNCCKEISFERKNVTAYC 493
Query: 693 NILMQVI 699
L++++
Sbjct: 494 RDLIKIL 500
Score = 39 (18.8 bits), Expect = 8.0e-57, Sum P(3) = 8.0e-57
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 8 RDEVIAKLIEMGFDDSDITEAVET-VGPSFNDAIEYILNGSVRN 50
+ V+ K I++ +DSD E+ E P+ + ++ +G V++
Sbjct: 38 KKNVLTKRIKLCLEDSDAGESSECDSSPASWNKEDFPWSGKVKD 81
>POMBASE|SPAC2G11.12 [details] [associations]
symbol:rqh1 "RecQ type DNA helicase Rqh1" species:4896
"Schizosaccharomyces pombe" [GO:0000723 "telomere maintenance"
evidence=IGI;IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IGI] [GO:0000725
"recombinational repair" evidence=IGI] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IC] [GO:0006268 "DNA unwinding
involved in replication" evidence=ISO] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0009650 "UV protection"
evidence=IMP] [GO:0031422 "RecQ helicase-Topo III complex"
evidence=IDA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IDA] [GO:0034065 "replication fork processing at rDNA
locus" evidence=IGI] [GO:0043007 "maintenance of rDNA"
evidence=IMP] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IMP] [GO:0071140 "resolution of mitotic
recombination intermediates" evidence=IMP] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 PomBase:SPAC2G11.12 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0043596 GO:GO:0000724 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0007131 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 GO:GO:0031573
GO:GO:0009650 GO:GO:0006268 EMBL:Y09426 PIR:S62467
RefSeq:NP_593092.1 ProteinModelPortal:Q09811 STRING:Q09811
EnsemblFungi:SPAC2G11.12.1 GeneID:2541620 KEGG:spo:SPAC2G11.12
OrthoDB:EOG4XSPZ5 NextBio:20802714 GO:GO:0031422 GO:GO:0034065
GO:GO:0071140 Uniprot:Q09811
Length = 1328
Score = 358 (131.1 bits), Expect = 8.4e-57, Sum P(3) = 8.4e-57
Identities = 89/234 (38%), Positives = 128/234 (54%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK-- 214
W +V LK F + Q EA++ L+ D +L TG GKSLC+Q+PA++ G
Sbjct: 503 WSKEVLGCLKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEGGAS 562
Query: 215 --VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ-----KALRGMYSIIYVC 267
V +VISPL+SLM DQ L K + + L QP ++ Q A + ++YV
Sbjct: 563 RGVTLVISPLLSLMQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNVLVKLLYVT 622
Query: 268 PETVIR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324
PE + + + L+ L E + +A IDE HCVS WGHDFRPDY++L +LR+ +
Sbjct: 623 PEGLASNGAITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQG--- 679
Query: 325 KSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
IP MALTATA V++DI+ +L M + + +SF RPNL + +K K
Sbjct: 680 ------IPFMALTATANEIVKKDIINTLRMENCLE-LKSSFNRPNLFYEIKPKK 726
Score = 323 (118.8 bits), Expect = 8.4e-57, Sum P(3) = 8.4e-57
Identities = 75/218 (34%), Positives = 125/218 (57%)
Query: 516 IIYVPTRKETLSIAKYLCG-FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
IIY +R +A L +G+KA Y+A L K + +R+ E+ +++VATIAFGM
Sbjct: 746 IIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGM 805
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPSRRSE 631
G+DK +VR +IH+ +P+SLE YYQE GRAGRDG A C+++ + T L+ S +
Sbjct: 806 GVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDHVTFQKLIMSGDGD 865
Query: 632 DQTKQAYR-MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL-CDVCVDGPPEMKNLK 689
+TK+ R ML ++ N + CR K ++ YFGE+F C+ CD+C + +K
Sbjct: 866 AETKERQRQMLRQVIQFCENKTDCRRKQVLAYFGENFDKVHCRKGCDICCEEATYIKQDM 925
Query: 690 EEANI-LMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMD 726
E ++ ++++ + + ++ + D I+ G K K ++
Sbjct: 926 TEFSLQAIKLLKSISGKATLLQLMD-IFRGSKSAKIVE 962
Score = 40 (19.1 bits), Expect = 8.4e-57, Sum P(3) = 8.4e-57
Identities = 17/83 (20%), Positives = 31/83 (37%)
Query: 8 RDEVIAKLIEMGFDDSDIT-EAVETVGPSFNDAIEYIL----NGSVRNSKGKSVSWSSKC 62
R+ IA+ E DD+D T + + + + ++ + N +SK
Sbjct: 402 RNSDIAEFDEFDIDDADFTFNTTDPINDESGASSDVVVIDDEEDDIENRPLNQALKASKA 461
Query: 63 VTENGKTLGKRTLSSANSLGQMR 85
N L +L LG+M+
Sbjct: 462 AVSNASLLQSSSLDRP-LLGEMK 483
>UNIPROTKB|F1NPI7 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0015630 "microtubule
cytoskeleton" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
GO:GO:0008026 OMA:ESSQTCH EMBL:AADN02006609 IPI:IPI00602593
Ensembl:ENSGALT00000021517 Uniprot:F1NPI7
Length = 661
Score = 372 (136.0 bits), Expect = 8.6e-57, Sum P(2) = 8.6e-57
Identities = 88/246 (35%), Positives = 133/246 (54%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W K+ + L+ F ++ Q E ++A +A D ++ TG GKSLC+Q+PA+ +
Sbjct: 75 WYEKIKTALQNKFKLPKFRSLQLETVNATMAGKDIFLVMPTGGGKSLCYQLPAVCSDGFT 134
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVE----QKALRG-MYSIIYVCPETV 271
+VI PLISLM DQ L + G++A L + V+ Q R ++YV PE +
Sbjct: 135 LVICPLISLMEDQLMVLDQLGISATLLNASSSKEHVKWVHAQMLDRNSQLKLLYVTPEKI 194
Query: 272 IR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
+ + L++ ++ +A A+DEVHC S+WGHDFRPDY+ L +L+ F
Sbjct: 195 AKSKMFMSKLEKAYQAGCLARIAVDEVHCCSQWGHDFRPDYKSLGILKRQFPC------- 247
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKD 388
PL+ LTATAT V +D LH+ K F SF RPNL + V+H K S+ + +D
Sbjct: 248 --APLIGLTATATNHVLKDAQNILHIQKCITFT-ASFNRPNLYYEVRH-KPSNNEDFIED 303
Query: 389 FCQLID 394
+LI+
Sbjct: 304 IVKLIN 309
Score = 287 (106.1 bits), Expect = 8.6e-57, Sum P(2) = 8.6e-57
Identities = 68/203 (33%), Positives = 116/203 (57%)
Query: 513 GLT-IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
GL+ I+Y ++K++ + L G+KA Y+A++ +VH + N+++VVVAT+A
Sbjct: 314 GLSGIVYCFSQKDSEQVTVSLQKLGIKAGTYHANMDAKYKTKVHKGWAANQIQVVVATVA 373
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSE 631
FGMGIDK +VR +IH+ +S+E YYQE+GRAGRD ADC+LY + + E
Sbjct: 374 FGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDQKADCILYYGFGDIFRISSMVVME 433
Query: 632 DQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-QLCDVCV-DGPPEMKNL 688
+ ++ Y M+S C N + CR ++ +F E + C ++CD C + E K++
Sbjct: 434 NVGQEKLYDMVSYC----QNMNKCRRVLIARHFDEVWESANCNRMCDNCCRENSLEKKDI 489
Query: 689 KEEANILMQVIAAYNEQSNSMDD 711
L++++ EQ+++M +
Sbjct: 490 TGYYRDLIKIL----EQADNMSE 508
>ASPGD|ASPL0000045206 [details] [associations]
symbol:musN species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
EMBL:BN001307 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 EMBL:AACD01000032
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
KO:K10901 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614 RefSeq:XP_659691.1
ProteinModelPortal:G5EB35 EnsemblFungi:CADANIAT00008758
GeneID:2875310 KEGG:ani:AN2087.2 HOGENOM:HOG000182791 OMA:EERQWIM
Uniprot:G5EB35
Length = 1534
Score = 343 (125.8 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 85/234 (36%), Positives = 129/234 (55%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----T 212
W V LK+ F + Q EA+ + L+ D VL TG GKSLC+Q+P+++ T
Sbjct: 684 WTKDVKIALKERFHLRGFRPNQLEAIDSTLSGKDTFVLMPTGGGKSLCYQLPSVISSGST 743
Query: 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS--------II 264
V +VISPL+SLM DQ S L ++ + A +L +G ++ Q + + S ++
Sbjct: 744 RGVTLVISPLLSLMQDQVSHLRQNKIKA-YLINGDTPSEERQWIMSTLSSHNPETHIELL 802
Query: 265 YVCPETVIR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGA 321
Y+ PE + + L +++L + +A IDE HCVS+WGHDFRPDY+++ R
Sbjct: 803 YITPEMISKSHALTDRIEKLCSIQKLARVVIDEAHCVSQWGHDFRPDYKQIGAFRARIPG 862
Query: 322 NNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+PLMALTATAT V+ D++ +L M +G + SF RPNL + V+
Sbjct: 863 ---------VPLMALTATATENVKVDVIHNLRM-QGCEVFTQSFNRPNLTYEVR 906
Score = 330 (121.2 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 79/262 (30%), Positives = 135/262 (51%)
Query: 453 KEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLED 512
+ + V+ + N + +V F + P+ + R + +LL+ A+ + + +
Sbjct: 874 ENVKVDVIHNLRMQGCEVFTQSF--NRPNLTYEVRRKGKHAELLDSIADTI---KSTYRN 928
Query: 513 GLTIIYVPTRKETLSIAKYL-CGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
I+Y +R +A+ L + +KA Y+A L R + + V+VATIA
Sbjct: 929 KCGIVYCLSRNTCEKVAEALRTNYSIKAEHYHAGLDAETRARTQQRWQAGDVHVIVATIA 988
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSR 628
FGMGIDK +VR +IH+ P+SLE YYQE GRAGRDG + C LY ++S+M +++
Sbjct: 989 FGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDGRRSGCYLYFSHRDVSTMQSMIEKN 1048
Query: 629 RSEDQTKQAY--RMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL-CDVCVDGPP-E 684
D ++ RML+D +Y N + CR ++ YF E F + C CD C G E
Sbjct: 1049 EDSDDVQKGRQTRMLNDVVKYCENANDCRRVQILAYFSESFKRQDCNASCDNCKSGDTFE 1108
Query: 685 MKNLKEEANILMQVIAAYNEQS 706
+++ E A+ ++++ + E++
Sbjct: 1109 VQDFSEHASAAIKIVRYFQERN 1130
Score = 39 (18.8 bits), Expect = 4.5e-25, Sum P(3) = 4.5e-25
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 367 RPNLRFSVKHSKTSSRASYKKD 388
+P++RF + HS S Y ++
Sbjct: 995 KPDVRFVIHHSIPKSLEGYYQE 1016
Score = 38 (18.4 bits), Expect = 4.5e-25, Sum P(3) = 4.5e-25
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLS 527
+E S Q+P +D Y P+ K ++S
Sbjct: 1445 SEYFSKSQQPFQDDSGDEYHPSPKSSIS 1472
>UNIPROTKB|Q9DEY9 [details] [associations]
symbol:blm "Bloom syndrome protein homolog" species:8355
"Xenopus laevis" [GO:0000729 "DNA double-strand break processing"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOVERGEN:HBG004850 GO:GO:0000729
CTD:641 EMBL:AF307841 RefSeq:NP_001079095.1 UniGene:Xl.706
ProteinModelPortal:Q9DEY9 GeneID:373628 KEGG:xla:373628
Xenbase:XB-GENE-982565 Uniprot:Q9DEY9
Length = 1364
Score = 401 (146.2 bits), Expect = 7.7e-56, Sum P(2) = 7.7e-56
Identities = 93/223 (41%), Positives = 131/223 (58%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + Q EA++A L DC +L TG GKSLC+Q+P ++ V +VISPL
Sbjct: 610 IFHKKFGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQLPGCISPGVTIVISPLR 669
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D + L+ + ++YV PE V RLI
Sbjct: 670 SLIVDQVQKLTSLDIPATYLTGDKTDAEAASIYLQLSKKDPIIKLLYVTPEKVCASTRLI 729
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
++ L E + +A F IDE HCVS+WGHDFRPDY+RL+VLR+ F + +P+MA
Sbjct: 730 STMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRLNVLRQKFQS---------VPMMA 780
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
LTATA +V++DIL L M+K F + SF R NL++ V K
Sbjct: 781 LTATANPRVKKDILNQLKMTKPQIFTM-SFNRDNLKYEVLPKK 822
Score = 261 (96.9 bits), Expect = 7.7e-56, Sum P(2) = 7.7e-56
Identities = 71/183 (38%), Positives = 100/183 (54%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVV 567
P + G IIY +R E ++A L G+ A AY+A L S V H +++ +V+
Sbjct: 839 PNDSG--IIYCLSRHECDTMADTLQKEGLAALAYHAGLADSNRDYVQHKWINQDDCQVIC 896
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTL 624
ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG + C+L Y +++ + L
Sbjct: 897 ATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSHCLLFYSYHDVTRIRRL 956
Query: 625 LPSRRS-EDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-----FSHEKCQL-CD 676
+ + TKQ + L Y N CR L+ YFGE+ F E Q+ CD
Sbjct: 957 IQMEKDGNSHTKQTHFNNLYSMVHYCENVVECRRMQLLSYFGENNFNPNFCKEHTQVACD 1016
Query: 677 VCV 679
C+
Sbjct: 1017 NCL 1019
>UNIPROTKB|E1BQ04 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051782 "negative regulation of cell division" evidence=IEA]
[GO:0051259 "protein oligomerization" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0046641 "positive
regulation of alpha-beta T cell proliferation" evidence=IEA]
[GO:0046632 "alpha-beta T cell differentiation" evidence=IEA]
[GO:0045950 "negative regulation of mitotic recombination"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045120 "pronucleus" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0009378 "four-way junction helicase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
"bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 OMA:NANDQAI GO:GO:0000800
GO:GO:0045120 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
GO:GO:0051782 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
GO:GO:0031297 EMBL:DAAA02052171 IPI:IPI01003766
Ensembl:ENSBTAT00000027057 Uniprot:E1BQ04
Length = 1417
Score = 390 (142.3 bits), Expect = 2.8e-55, Sum P(2) = 2.8e-55
Identities = 91/223 (40%), Positives = 133/223 (59%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 658 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 717
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 718 SLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLI 777
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFRPDY+R+++LR+ F + +P+MA
Sbjct: 778 STLENLYERKLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQKFPS---------VPVMA 828
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
LTATA +V++DIL L + + F + SF R NL++ V K
Sbjct: 829 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYVLPKK 870
Score = 268 (99.4 bits), Expect = 2.8e-55, Sum P(2) = 2.8e-55
Identities = 73/210 (34%), Positives = 117/210 (55%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVV 567
P + G IIY +R+E ++A+ L G+ A AY+A L S V H +++ +V+
Sbjct: 887 PHDSG--IIYCLSRRECDTMAETLQNDGLAALAYHAGLSDSARDEVQHKWINQDGCQVIC 944
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTL 624
ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L Y +++ + L
Sbjct: 945 ATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCILFYTYHDVTRLKRL 1004
Query: 625 LPSRRSEDQ-TKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGE-DFSHEKCQLC-DVCVD 680
+ + ++ T++ + L Y N + CR L+ YFGE +F+ C+ DV D
Sbjct: 1005 ILMEKDGNRHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENEFNPHFCKKYPDVSCD 1064
Query: 681 GPPEMKNLKEE--ANILMQVIAAYNEQSNS 708
+ K+ K + + ++ E S+S
Sbjct: 1065 NCYKTKDFKTKDVTEDVKNIVRFVQEHSSS 1094
>WB|WBGene00001865 [details] [associations]
symbol:him-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0051307 "meiotic chromosome separation" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI] [GO:0007059
"chromosome segregation" evidence=IGI] [GO:0007126 "meiosis"
evidence=IGI] [GO:0007067 "mitosis" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IMP] [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0019899 "enzyme binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0005634 GO:GO:0008340 GO:GO:0000077 GO:GO:0043066
GO:GO:0007067 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010165 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0007131 EMBL:AY095296 EMBL:Z83123 PIR:T24415
RefSeq:NP_502390.2 UniGene:Cel.5990 ProteinModelPortal:O18017
SMR:O18017 IntAct:O18017 MINT:MINT-227232 STRING:O18017
PaxDb:O18017 EnsemblMetazoa:T04A11.6 GeneID:178201
KEGG:cel:CELE_T04A11.6 UCSC:T04A11.6.1 CTD:178201 WormBase:T04A11.6
eggNOG:COG0514 GeneTree:ENSGT00550000074520 HOGENOM:HOG000022124
InParanoid:O18017 KO:K10901 OMA:PEDANDS NextBio:900142
GO:GO:0051307 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
Uniprot:O18017
Length = 988
Score = 365 (133.5 bits), Expect = 4.0e-55, Sum P(2) = 4.0e-55
Identities = 93/231 (40%), Positives = 133/231 (57%)
Query: 153 IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT 212
+G+D ++ LK FG + ++ QK+ + + L HD VL TG+GKSLC+Q+PA++
Sbjct: 227 LGADMNKELYDTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVIL 286
Query: 213 GKVVVVISPLISLMHDQCSKLSKHGV--TACFLGSGQP-DNKVEQKALRGMYSI--IYVC 267
V VV+SPL SL+ DQ K+ + G+ A G P K+ + G SI +YV
Sbjct: 287 PGVTVVVSPLRSLIEDQKMKMKELGIGCEALTADLGAPAQEKIYAELGSGNPSIKLLYVT 346
Query: 268 PETVI---RLIKPLQRLAESRGI-ALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANN 323
PE + RL L RG+ A F IDE HCVS+WGHDFRPDY +LS LRE + AN
Sbjct: 347 PEKISASGRLNSVFFDL-HRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKY-ANP 404
Query: 324 LKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P++ALTATAT ++ D L M + +K ++SF R NL++ +
Sbjct: 405 ------PVPIIALTATATPKIVTDARDHLKM-QNSKLFISSFVRDNLKYDL 448
Score = 288 (106.4 bits), Expect = 4.0e-55, Sum P(2) = 4.0e-55
Identities = 77/199 (38%), Positives = 109/199 (54%)
Query: 494 DLLNKPAERLSMLQEPLED---GLT-IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKS 549
DL+ K A L + E ++ G + I+Y +RKE ++ L G+ A Y+A L +
Sbjct: 447 DLIPKAARSLINVVEKMKQLYPGKSGIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDN 506
Query: 550 QLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609
V + NK +V+ ATIAFGMGIDK +VR +IHY P+S+E YYQE GRAGRDG
Sbjct: 507 LRVSVQRSWIANKFDVICATIAFGMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMP 566
Query: 610 ADCV-LYANLSSMPTLLPSRRSEDQTKQAYRM--LSDCFR---YGMNTSCCRAKILVEYF 663
+ C+ LY+ S+ L E T R L++ + Y N S CR K+LVE+F
Sbjct: 567 SYCLMLYSYHDSIR--LRRMIEEGNTTTGVRSMHLNNVLQVVAYCENVSVCRRKMLVEHF 624
Query: 664 GEDFSHEKCQL----CDVC 678
GE + + C+ CD+C
Sbjct: 625 GEVYDEQSCRNSKTPCDIC 643
>RGD|1564788 [details] [associations]
symbol:Wrn "Werner syndrome, RecQ helicase-like" species:10116
"Rattus norvegicus" [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
"telomere maintenance" evidence=ISO] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0001302 "replicative cell
aging" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=ISO] [GO:0004527 "exonuclease activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006259 "DNA metabolic
process" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=ISO] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0006979 "response to oxidative stress"
evidence=ISO] [GO:0007569 "cell aging" evidence=ISO] [GO:0008408
"3'-5' exonuclease activity" evidence=IEA;ISO] [GO:0009267
"cellular response to starvation" evidence=ISO] [GO:0009378
"four-way junction helicase activity" evidence=ISO] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0010259 "multicellular
organismal aging" evidence=ISO] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0030145 "manganese ion binding" evidence=ISO]
[GO:0031297 "replication fork processing" evidence=ISO] [GO:0032066
"nucleolus to nucleoplasm transport" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0040009 "regulation of growth rate"
evidence=ISO] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0042981 "regulation of apoptotic process"
evidence=ISO] [GO:0043138 "3'-5' DNA helicase activity"
evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0051345 "positive regulation of
hydrolase activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA
binding" evidence=ISO] [GO:0071480 "cellular response to gamma
radiation" evidence=ISO] [GO:0032389 "MutLalpha complex"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
SMART:SM00490 SMART:SM00956 RGD:1564788 GO:GO:0005524 GO:GO:0005813
GO:GO:0005654 GO:GO:0006979 GO:GO:0005730 GO:GO:0042981
GO:GO:0000287 GO:GO:0006284 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0001302 GO:GO:0030145 GO:GO:0006310 GO:GO:0009267
SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345
GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
GO:GO:0032066 IPI:IPI00960063 ProteinModelPortal:F1LTH9
Ensembl:ENSRNOT00000058805 Uniprot:F1LTH9
Length = 1448
Score = 386 (140.9 bits), Expect = 4.0e-55, Sum P(3) = 4.0e-55
Identities = 92/228 (40%), Positives = 129/228 (56%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGH S K Q + + + L D +V+ ATG GKSLCFQ P + TGK+ +VISPLI
Sbjct: 549 LKTYFGHCSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLI 608
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYV--CPETVIRLIKPLQRL 281
SLM DQ +L + AC LGS QP N + L+ Y ++ V + + + +Q
Sbjct: 609 SLMEDQVLQLEMSNIPACLLGSAQPKNILGDIKLQSKYKVVEVWFTYQYCMNQFRMIQEA 668
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
S GI L A+DE HC+S+WGHDFR +R L L+ +L +P++AL+ATA+
Sbjct: 669 RCSVGITLIAVDEAHCISEWGHDFRSSFRTLGSLKT--------ALPL-VPVIALSATAS 719
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDF 389
+REDI++ L++ K T F RPNL V+ KT + K F
Sbjct: 720 SSIREDIIRCLNL-KDPHITCTGFDRPNLYLEVER-KTGNILQDLKPF 765
Score = 278 (102.9 bits), Expect = 4.0e-55, Sum P(3) = 4.0e-55
Identities = 63/166 (37%), Positives = 99/166 (59%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L V AY+A + S+ + +H F ++++ VVATIA
Sbjct: 777 EGPTIIYCPSRKVTEQVTVELGKLNVACQAYHAGMKISERKDIHHRFLRDEIQCVVATIA 836
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C L A+ ++ L
Sbjct: 837 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTTRNRLIEI 896
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL 674
+E +M+ +Y +++S CR +I++ +F ED +K L
Sbjct: 897 HNEKFRLHKLKMMVKMEKY-LHSSRCRRQIILSHF-EDKRLQKASL 940
Score = 40 (19.1 bits), Expect = 4.0e-55, Sum P(3) = 4.0e-55
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 128 SYPGMDCNLKAESDSLAVSCPKEVEIGSDW 157
SY DC+ +E S+ +S V +W
Sbjct: 57 SYEASDCSFLSEDISMHLSDGDVVGFDMEW 86
>ZFIN|ZDB-GENE-070702-2 [details] [associations]
symbol:wrn "Werner syndrome" species:7955 "Danio
rerio" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00474 SMART:SM00490
SMART:SM00956 ZFIN:ZDB-GENE-070702-2 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:BX537303 IPI:IPI00993584
ProteinModelPortal:E9QGF6 Ensembl:ENSDART00000136531 Uniprot:E9QGF6
Length = 1436
Score = 413 (150.4 bits), Expect = 5.1e-55, Sum P(2) = 5.1e-55
Identities = 94/211 (44%), Positives = 124/211 (58%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK FGH S K Q + + + L D LV+ ATG GKSLCFQ P + + VVISPLI
Sbjct: 435 LKMFFGHHSFKPVQWKVIQSILTERRDNLVVMATGYGKSLCFQFPPVYCQTISVVISPLI 494
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
+LM DQ +L+ + ACFLGS Q N EQ RG + ++Y+ PE I L +L
Sbjct: 495 ALMEDQVLQLTMSNIPACFLGSAQTKNLNEQ-VKRGDFRVVYMTPEFCSGNIPLLVQLDR 553
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ G++L A+DE HC+S+WGHDFR YR L L++N +P +ALTATA+
Sbjct: 554 TVGLSLIAVDEAHCISQWGHDFRSAYRELGKLKKNLPT---------VPFLALTATASPS 604
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+R+DI+KSLH+ TSF RPNL V
Sbjct: 605 IRDDIIKSLHLIN-PMITCTSFDRPNLYLDV 634
Score = 241 (89.9 bits), Expect = 5.1e-55, Sum P(2) = 5.1e-55
Identities = 90/319 (28%), Positives = 155/319 (48%)
Query: 469 DVACGEFY-GHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLS 527
D+ CG ++ G S + R+T F R ++ Q D ++ VP +
Sbjct: 684 DIPCGVYHAGLSIKQRRETQHQFMRDEI-----------QVHAYDVAAVVSVPGVNPPAN 732
Query: 528 IAKYLCGFGVKAAAYNASLPKSQLRRVH--TEFHENKLEVVVATIAFGMGIDKLNVRRII 585
I + L G ++ + +L K+ + +V+ E ++ VVAT+AFGMGI+K ++R++I
Sbjct: 733 IEQQLIKLG---SSQSVALLKASIIQVNFLDEIMNSQGWCVVATVAFGMGINKSDIRKVI 789
Query: 586 HYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSRRSEDQTKQAYRMLS 642
HYG P+ +E+YYQE GRAGRDG + C VL+ +++ +L +SE M++
Sbjct: 790 HYGAPKEMESYYQEIGRAGRDGLPSACHVLWMPGDMALNKFILNQSKSERFRSYKIDMMA 849
Query: 643 DCFRYGMNTSCCRAKILVEYFGEDFSHEKC--------QLCDVCVDGPPEMKNLKEEANI 694
+Y +N++ CR K+++ +F ED K Q CD C G E E+ +
Sbjct: 850 KMEKY-LNSTKCRRKLILCHF-EDKRLRKVTSGILGSSQCCDNCRSGVNE-----EDLEV 902
Query: 695 LMQV--IAAYN--EQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDL- 749
L Q + AY + + M++ GI + I F+ + + R+ S + D+
Sbjct: 903 LQQDFGLCAYQLMKAISVMEERFGITAPIL---FLRGSCSQRVPERFRKHSLFGIGRDVS 959
Query: 750 -LWWRGLARIMENKGYIRE 767
WW+ L R + + Y+ E
Sbjct: 960 ETWWKALGRELIAEKYLME 978
Score = 75 (31.5 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV---VA 568
+G I+Y P++KE + L + Y+A L Q R +F ++++V VA
Sbjct: 660 EGSAIVYCPSKKEAERVTTALFKLDIPCGVYHAGLSIKQRRETQHQFMRDEIQVHAYDVA 719
Query: 569 TIAFGMGIDK-LNV-RRIIHYGWPQSL 593
+ G++ N+ +++I G QS+
Sbjct: 720 AVVSVPGVNPPANIEQQLIKLGSSQSV 746
>UNIPROTKB|F1ND40 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0000079 "regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=IEA] [GO:0000405 "bubble
DNA binding" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0000729 "DNA double-strand break processing"
evidence=IEA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0009378
"four-way junction helicase activity" evidence=IEA] [GO:0010165
"response to X-ray" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0045120 "pronucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045950 "negative regulation of mitotic recombination"
evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
evidence=IEA] [GO:0046641 "positive regulation of alpha-beta T cell
proliferation" evidence=IEA] [GO:0051098 "regulation of binding"
evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
[GO:0051782 "negative regulation of cell division" evidence=IEA]
[GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0010165
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AADN02038832 IPI:IPI00823016 Ensembl:ENSGALT00000038179
ArrayExpress:F1ND40 Uniprot:F1ND40
Length = 1142
Score = 379 (138.5 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 90/223 (40%), Positives = 128/223 (57%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ + FG S + Q EA++A L DC +L TG GKSLC+Q+PA ++ V VVISPL
Sbjct: 388 IFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLR 447
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL + A +L D + ++ + ++YV PE V RL+
Sbjct: 448 SLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASNRLL 507
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L + + +A F IDE HCVS+WGHDFR DY+RL++LR+ F + +P+MA
Sbjct: 508 SALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHS---------VPMMA 558
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
LTATA +V++DI L M K F + SF R NL++ V K
Sbjct: 559 LTATANPRVQKDIQNQLEMLKPQVFTM-SFNRHNLKYDVLPKK 600
Score = 272 (100.8 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 75/223 (33%), Positives = 116/223 (52%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVV 567
P + G IIY +R E + A L G+ A AY+A L S V ++ ++ +V+
Sbjct: 617 PHDSG--IIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVIC 674
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--- 624
ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + S + L
Sbjct: 675 ATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRL 734
Query: 625 -LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGE-DFSHEKCQ-----LCD 676
L + T+Q + L Y N CR L+ YFGE DF+ C+ +CD
Sbjct: 735 ILMEKDGNSHTRQTHFNNLYSMVHYCENVVDCRRIQLLAYFGETDFNPNFCKDHPEVICD 794
Query: 677 VCVDGPP-EMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSG 718
C + +N+ +E +++ + + Q ++ + SG
Sbjct: 795 NCSRKKDYKSRNVTDEVKSIIRFVQQHCGQMGGINGNRNTGSG 837
>UNIPROTKB|F1P3V1 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0051880 "G-quadruplex DNA binding" evidence=IEA] [GO:0000079
"regulation of cyclin-dependent protein serine/threonine kinase
activity" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000800 "lateral element" evidence=IEA] [GO:0001673 "male germ
cell nucleus" evidence=IEA] [GO:0002039 "p53 binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0009378 "four-way junction helicase
activity" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0016363 "nuclear matrix" evidence=IEA]
[GO:0016605 "PML body" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045950 "negative regulation of
mitotic recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
differentiation" evidence=IEA] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0051259 "protein
oligomerization" evidence=IEA] [GO:0051782 "negative regulation of
cell division" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
GO:GO:0005737 GO:GO:0045893 GO:GO:0000079 GO:GO:0005730
GO:GO:0016605 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 GO:GO:0001673 GO:GO:0003697 GO:GO:0016363
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AADN02038832 IPI:IPI00585933 Ensembl:ENSGALT00000013437
OMA:CDTTAAI ArrayExpress:F1P3V1 Uniprot:F1P3V1
Length = 1380
Score = 379 (138.5 bits), Expect = 1.7e-54, Sum P(2) = 1.7e-54
Identities = 90/223 (40%), Positives = 128/223 (57%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ + FG S + Q EA++A L DC +L TG GKSLC+Q+PA ++ V VVISPL
Sbjct: 626 IFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLR 685
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL + A +L D + ++ + ++YV PE V RL+
Sbjct: 686 SLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASNRLL 745
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L + + +A F IDE HCVS+WGHDFR DY+RL++LR+ F + +P+MA
Sbjct: 746 SALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHS---------VPMMA 796
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
LTATA +V++DI L M K F + SF R NL++ V K
Sbjct: 797 LTATANPRVQKDIQNQLEMLKPQVFTM-SFNRHNLKYDVLPKK 838
Score = 272 (100.8 bits), Expect = 1.7e-54, Sum P(2) = 1.7e-54
Identities = 75/223 (33%), Positives = 116/223 (52%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVV 567
P + G IIY +R E + A L G+ A AY+A L S V ++ ++ +V+
Sbjct: 855 PHDSG--IIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVIC 912
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--- 624
ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + S + L
Sbjct: 913 ATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRL 972
Query: 625 -LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGE-DFSHEKCQ-----LCD 676
L + T+Q + L Y N CR L+ YFGE DF+ C+ +CD
Sbjct: 973 ILMEKDGNSHTRQTHFNNLYSMVHYCENVVDCRRIQLLAYFGETDFNPNFCKDHPEVICD 1032
Query: 677 VCVDGPP-EMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSG 718
C + +N+ +E +++ + + Q ++ + SG
Sbjct: 1033 NCSRKKDYKSRNVTDEVKSIIRFVQQHCGQMGGINGNRNTGSG 1075
>MGI|MGI:1328362 [details] [associations]
symbol:Blm "Bloom syndrome, RecQ helicase-like"
species:10090 "Mus musculus" [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
"telomere maintenance" evidence=IGI] [GO:0000729 "DNA double-strand
break processing" evidence=ISO] [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000800 "lateral element"
evidence=ISO] [GO:0001673 "male germ cell nucleus" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005657
"replication fork" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO;IDA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISO] [GO:0009378 "four-way junction
helicase activity" evidence=ISO] [GO:0010165 "response to X-ray"
evidence=ISO] [GO:0016363 "nuclear matrix" evidence=ISO]
[GO:0016605 "PML body" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031297
"replication fork processing" evidence=ISO] [GO:0036310 "annealing
helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5'
DNA helicase activity" evidence=IDA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045910 "negative regulation of
DNA recombination" evidence=ISO] [GO:0045950 "negative regulation
of mitotic recombination" evidence=IMP] [GO:0046632 "alpha-beta T
cell differentiation" evidence=IMP] [GO:0046641 "positive
regulation of alpha-beta T cell proliferation" evidence=IMP]
[GO:0051098 "regulation of binding" evidence=IDA] [GO:0051259
"protein oligomerization" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=IMP] [GO:0051782 "negative regulation of
cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 MGI:MGI:1328362 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0003677 GO:GO:0006260
Gene3D:1.10.10.10 InterPro:IPR011991 Reactome:REACT_120463
GO:GO:0006310 GO:GO:0001673 GO:GO:0046632 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
Reactome:REACT_27235 GO:GO:0005657 eggNOG:COG0514
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOGENOM:HOG000095239
HOVERGEN:HBG004850 OrthoDB:EOG4640B3 GO:GO:0000729 ChiTaRS:BLM
CTD:641 GO:GO:0045120 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
EMBL:Z98263 EMBL:AB008674 IPI:IPI00329943 RefSeq:NP_001035992.1
RefSeq:NP_031576.4 UniGene:Mm.12932 ProteinModelPortal:O88700
SMR:O88700 DIP:DIP-27643N STRING:O88700 PhosphoSite:O88700
PRIDE:O88700 DNASU:12144 Ensembl:ENSMUST00000081314 GeneID:12144
KEGG:mmu:12144 UCSC:uc009iaw.2 InParanoid:O88700 NextBio:280473
Bgee:O88700 CleanEx:MM_BLM Genevestigator:O88700
GermOnline:ENSMUSG00000030528 Uniprot:O88700
Length = 1416
Score = 382 (139.5 bits), Expect = 1.7e-54, Sum P(3) = 1.7e-54
Identities = 90/223 (40%), Positives = 132/223 (59%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 666 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 725
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 726 SLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLI 785
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 786 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 836
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
LTATA +V++DIL L + + F + SF R NL++ V K
Sbjct: 837 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYVLPKK 878
Score = 272 (100.8 bits), Expect = 1.7e-54, Sum P(3) = 1.7e-54
Identities = 76/210 (36%), Positives = 116/210 (55%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVV 567
P + G IIY +R+E ++A L G+ A AY+A L S V H +++ +V+
Sbjct: 895 PYDSG--IIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVIC 952
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTL 624
ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ CVL Y +++ + L
Sbjct: 953 ATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRL 1012
Query: 625 LPSRRSED-QTKQAY-RMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQLC-DVCVD 680
+ + + TK+ + L Y N + CR L+ YFGE F+ + C+ DV D
Sbjct: 1013 IMMEKDGNYHTKETHVNNLYSMVHYCENITECRRIQLLAYFGEKGFNPDFCKKYPDVSCD 1072
Query: 681 GPPEMKNLKEE--ANILMQVIAAYNEQSNS 708
+ K+ K + + + +I E S+S
Sbjct: 1073 NCCKTKDYKTKDVTDDVKNIIRFVQEHSSS 1102
Score = 44 (20.5 bits), Expect = 1.7e-54, Sum P(3) = 1.7e-54
Identities = 16/64 (25%), Positives = 28/64 (43%)
Query: 123 EEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFG----HSSLKNFQ 178
EE++E G DC D + + E ++ + + + LK H G S K+ +
Sbjct: 224 EEEEEEAEGADC---LSRDVICIDNDSASEELTEKDTQESQSLKAHLGAERGDSEKKSHE 280
Query: 179 KEAL 182
EA+
Sbjct: 281 DEAV 284
>UNIPROTKB|J3KTQ2 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5
Ensembl:ENST00000578201 Uniprot:J3KTQ2
Length = 480
Score = 358 (131.1 bits), Expect = 1.9e-54, Sum P(2) = 1.9e-54
Identities = 94/245 (38%), Positives = 125/245 (51%)
Query: 156 DWEVKVNSLLKKHFGHSSLKN-FQKEALSAWL-AHHDCLVLAATGSGKSLCFQIPALLTG 213
D E +V S LKK FG S K Q+ A A + + D V TG+GKSLC+Q+PALL
Sbjct: 11 DPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAK 70
Query: 214 KVVVVISPLISLMHDQCSKLSKHGVTACFLGS--GQPDNK---VEQKALRGMYSIIYVCP 268
+ +V+SPLI+L+ DQ L V L S + K + + + I+Y+ P
Sbjct: 71 GITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITP 130
Query: 269 ETVIRL-IKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
E +P L L ++ +DE HCVS+WGHDFRPDY RL LR G
Sbjct: 131 EMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLG------ 184
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT-SSRASY 385
P +ALTATAT QV+ED+ +LH+ K T FR NL + V+ + S
Sbjct: 185 ---HAPCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGN 241
Query: 386 KKDFC 390
KDFC
Sbjct: 242 LKDFC 246
Score = 238 (88.8 bits), Expect = 1.9e-54, Sum P(2) = 1.9e-54
Identities = 73/234 (31%), Positives = 109/234 (46%)
Query: 503 LSMLQEPLEDGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
L L + + GL+ I+Y TR+ +A L GV A AY+A L S+ V ++
Sbjct: 247 LKALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWM 306
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
E K+ V+VATI+FGMG+DK NVR + H+ +S+ YYQE+GRAGRDG + C LY + +
Sbjct: 307 EEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRN 366
Query: 620 SMPTL----------LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSH 669
+ L +R + +A M D CR + +YFG+
Sbjct: 367 DRDQVSFLIRKEVAKLQEKRGNKASDKATIMAFDALVTFCEELGCRHAAIAKYFGDALP- 425
Query: 670 EKCQL-CDVCVDGPPEMKNLKE-EANILMQVIAAYNEQSNSMDDDDGIYSGIKK 721
C CD C + + L+ E + Q N D + +Y G +K
Sbjct: 426 -ACAKGCDHCQNPTAVRRRLEALERSSSWSKTCIGPSQGNGFDPE--LYEGGRK 476
Score = 49 (22.3 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 27/98 (27%), Positives = 46/98 (46%)
Query: 123 EEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEAL 182
+E+KE ++ K ++ L ++ P E+ S ++ +NSL+ +H S L + +
Sbjct: 107 QERKELLADLERE-KPQTKILYIT-P-EMAASSSFQPTLNSLVSRHL-LSYLVVDEAHCV 162
Query: 183 SAWLAHH---DCLVLAATGS--GKSLCFQIPALLTGKV 215
S W H D L L A S G + C + A T +V
Sbjct: 163 SQW-GHDFRPDYLRLGALRSRLGHAPCVALTATATPQV 199
Score = 43 (20.2 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKG 357
F P+ R S L++ FG ++ K+ PL A ++ +D+ + G
Sbjct: 10 FDPERRVRSTLKKVFGFDSFKT-----PLQESATMAVVKGNKDVFVCMPTGAG 57
>UNIPROTKB|Q9I920 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000729 "DNA
double-strand break processing" evidence=ISS] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AB040747 IPI:IPI00575589 UniGene:Gga.1914
ProteinModelPortal:Q9I920 STRING:Q9I920 PRIDE:Q9I920
HOGENOM:HOG000095239 HOVERGEN:HBG004850 InParanoid:Q9I920
OrthoDB:EOG4640B3 GO:GO:0000729 Uniprot:Q9I920
Length = 1142
Score = 379 (138.5 bits), Expect = 3.0e-54, Sum P(2) = 3.0e-54
Identities = 90/223 (40%), Positives = 128/223 (57%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ + FG S + Q EA++A L DC +L TG GKSLC+Q+PA ++ V VVISPL
Sbjct: 388 IFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLR 447
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL + A +L D + ++ + ++YV PE V RL+
Sbjct: 448 SLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASNRLL 507
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L + + +A F IDE HCVS+WGHDFR DY+RL++LR+ F + +P+MA
Sbjct: 508 SALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHS---------VPMMA 558
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
LTATA +V++DI L M K F + SF R NL++ V K
Sbjct: 559 LTATANPRVQKDIQNQLEMLKPQVFTM-SFNRHNLKYDVLPKK 600
Score = 267 (99.0 bits), Expect = 3.0e-54, Sum P(2) = 3.0e-54
Identities = 74/223 (33%), Positives = 115/223 (51%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVV 567
P + G IIY +R E + A L G+ A AY+A L S V ++ ++ +V+
Sbjct: 617 PHDSG--IIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVIC 674
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--- 624
ATIAFGMGIDK +VR +IH P+S+E YY E+GRAGRDG ++ C+L+ + S + L
Sbjct: 675 ATIAFGMGIDKPDVRYVIHASLPKSVEGYYHESGRAGRDGEMSHCLLFYSYSDVTRLRRL 734
Query: 625 -LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGE-DFSHEKCQ-----LCD 676
L + T+Q + L Y N CR L+ YFGE DF+ C+ +CD
Sbjct: 735 ILMEKDGNSHTRQTHFNNLYSMVHYCENVVDCRRIQLLAYFGETDFNPNFCKDHPEVICD 794
Query: 677 VCVDGPP-EMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSG 718
C + +N+ +E +++ + + Q ++ + SG
Sbjct: 795 NCSTKKDYKSRNVTDEVKSIIRFVQQHCGQMGGINGNRNTGSG 837
>TIGR_CMR|BA_2818 [details] [associations]
symbol:BA_2818 "ATP-dependent DNA helicase RecQ"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0009378 "four-way junction helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614
GO:GO:0009432 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK RefSeq:NP_845165.1
RefSeq:YP_019461.1 RefSeq:YP_028886.1 ProteinModelPortal:Q81PI6
DNASU:1085972 EnsemblBacteria:EBBACT00000011651
EnsemblBacteria:EBBACT00000017455 EnsemblBacteria:EBBACT00000023670
GeneID:1085972 GeneID:2814571 GeneID:2847794 KEGG:ban:BA_2818
KEGG:bar:GBAA_2818 KEGG:bat:BAS2627 ProtClustDB:CLSK916814
BioCyc:BANT260799:GJAJ-2691-MONOMER
BioCyc:BANT261594:GJ7F-2786-MONOMER Uniprot:Q81PI6
Length = 705
Score = 366 (133.9 bits), Expect = 4.3e-54, Sum P(2) = 4.3e-54
Identities = 88/233 (37%), Positives = 133/233 (57%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K LL +FG+SS + Q E + L D + + TG GKS+C+QIPAL+ +VI
Sbjct: 4 KAQELLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVI 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ L ++G++A ++ S + Q+ A +G Y + YV PE + + +
Sbjct: 64 SPLISLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLFYVAPERLDSM-E 122
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
+ +L + + I + AIDE HC+S+WGHDFRP Y + + + L ++AL
Sbjct: 123 FVDQLIDMK-IPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEEPL--------VLAL 173
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDF 389
TATAT QVR+DI +L +++ ++T+F R NL FSV K R +Y D+
Sbjct: 174 TATATPQVRDDICNTLGINQENT-IMTTFERENLSFSV--IKGQDRNAYLADY 223
Score = 270 (100.1 bits), Expect = 4.3e-54, Sum P(2) = 4.3e-54
Identities = 72/223 (32%), Positives = 108/223 (48%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566
Q E G IIY TRK + + L GV + Y+A + F +++ V+
Sbjct: 226 QNQKESG--IIYAATRKVVDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVM 283
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL-YAN--LSSMPT 623
VAT AFGMGIDK N+R +IHY P+++E+YYQEAGRAGRDG + C+L YA+ +
Sbjct: 284 VATSAFGMGIDKSNIRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILLYASQDVQVQRF 343
Query: 624 LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPP 683
L+ E + L + Y +T C +++YFGE+ E C C C D
Sbjct: 344 LIDQSIGESRFSNELEKLQNMTDY-CHTEQCLQSFILQYFGEE-PKEDCGRCGNCTDNRE 401
Query: 684 EMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMD 726
+ +E +L +I M + +G K +K ++
Sbjct: 402 SIDVTRESQMVLSCMIRTNQRFGKQMIAQ--VLTGSKNKKVIE 442
>CGD|CAL0004296 [details] [associations]
symbol:SGS1 species:5476 "Candida albicans" [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0001302
"replicative cell aging" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031422 "RecQ helicase-Topo III complex"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
molecule formation" evidence=IEA] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IEA] [GO:0045132
"meiotic chromosome segregation" evidence=IEA] [GO:0030447
"filamentous growth" evidence=IMP] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
Length = 1189
Score = 349 (127.9 bits), Expect = 6.8e-54, Sum P(2) = 6.8e-54
Identities = 92/231 (39%), Positives = 125/231 (54%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----TGKV 215
+V+S+L F S + Q EA+SA L++ D VL TG GKSLC+Q+PAL+ T
Sbjct: 452 EVHSILNNVFKLKSFRANQLEAVSATLSNKDVFVLMPTGGGKSLCYQLPALVKSGATKGT 511
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVI 272
VVISPLISLM DQ L + A S G DNK R G I+Y+ PE
Sbjct: 512 TVVISPLISLMQDQVQHLLAKNIKAGMFSSKGGNDDNKHTIHLFREGFLDIVYLSPERAN 571
Query: 273 R---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKF 329
+ + + +L + +A IDE HC+S WGHDFRPDY+ L ++ F
Sbjct: 572 KSNAMQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFPK-------- 623
Query: 330 DIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380
+P+MALTATA +V+ DIL +L M K + SF R NL + +K K++
Sbjct: 624 -VPIMALTATANEKVQMDILHNLKM-KDPVLLKQSFNRTNLFYEIKLKKSN 672
Score = 296 (109.3 bits), Expect = 6.8e-54, Sum P(2) = 6.8e-54
Identities = 69/220 (31%), Positives = 118/220 (53%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +++ + L +G+K + Y+A + + + + ENK++V+ ATIAFGMG
Sbjct: 691 IIYCHSKQSCEHTSMKLNEYGLKTSFYHAGMSADKRFNIQKRWQENKIQVICATIAFGMG 750
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLP--SRRS 630
IDK +VR +IH P++LE YYQE GRAGRDG+ ++CV+Y + S+ L+ S
Sbjct: 751 IDKPDVRFVIHLYLPRTLEGYYQETGRAGRDGNFSECVMYYCYKDARSLQNLIQRDEELS 810
Query: 631 EDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-QLCDVCVDG---PPEMK 686
E + L +Y NT+ CR K +++YF E F C + CD C D K
Sbjct: 811 ESGRESHLAKLRQVIQYCENTTDCRRKQVLQYFNETFDPANCHKQCDNCRDYNHVTSVEK 870
Query: 687 NLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMD 726
+ E A +++++ + ++ ++ ++ G+ +K +
Sbjct: 871 DCTEYAKDIIKLVKSIQDEQVTVLYCQDVFRGLSHKKITE 910
Score = 50 (22.7 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 442 DDEDVGN--SPMGKEMSVEFLENDSVDD 467
DD+D + + + KE ++F+E DS DD
Sbjct: 368 DDDDFLDFTTQLNKEREIDFIELDSDDD 395
Score = 38 (18.4 bits), Expect = 8.3e-27, Sum P(2) = 8.3e-27
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 573 GMGIDKLNVRRIIHYGWPQS-LEAYYQEAGRAGRD----GHLADCVL 614
G +DK +V RI Y Q + Y+ G D G AD VL
Sbjct: 922 GQSLDKNDVERIFFYLLSQQCIVEYHVMHGGFATDYVKVGKNADVVL 968
>UNIPROTKB|Q5A5R4 [details] [associations]
symbol:SGS1 "Putative uncharacterized protein SGS1"
species:237561 "Candida albicans SC5314" [GO:0001302 "replicative
cell aging" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0044182 "filamentous growth of a population of
unicellular organisms" evidence=IMP] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
Length = 1189
Score = 349 (127.9 bits), Expect = 6.8e-54, Sum P(2) = 6.8e-54
Identities = 92/231 (39%), Positives = 125/231 (54%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----TGKV 215
+V+S+L F S + Q EA+SA L++ D VL TG GKSLC+Q+PAL+ T
Sbjct: 452 EVHSILNNVFKLKSFRANQLEAVSATLSNKDVFVLMPTGGGKSLCYQLPALVKSGATKGT 511
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVI 272
VVISPLISLM DQ L + A S G DNK R G I+Y+ PE
Sbjct: 512 TVVISPLISLMQDQVQHLLAKNIKAGMFSSKGGNDDNKHTIHLFREGFLDIVYLSPERAN 571
Query: 273 R---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKF 329
+ + + +L + +A IDE HC+S WGHDFRPDY+ L ++ F
Sbjct: 572 KSNAMQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFPK-------- 623
Query: 330 DIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380
+P+MALTATA +V+ DIL +L M K + SF R NL + +K K++
Sbjct: 624 -VPIMALTATANEKVQMDILHNLKM-KDPVLLKQSFNRTNLFYEIKLKKSN 672
Score = 296 (109.3 bits), Expect = 6.8e-54, Sum P(2) = 6.8e-54
Identities = 69/220 (31%), Positives = 118/220 (53%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +++ + L +G+K + Y+A + + + + ENK++V+ ATIAFGMG
Sbjct: 691 IIYCHSKQSCEHTSMKLNEYGLKTSFYHAGMSADKRFNIQKRWQENKIQVICATIAFGMG 750
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLP--SRRS 630
IDK +VR +IH P++LE YYQE GRAGRDG+ ++CV+Y + S+ L+ S
Sbjct: 751 IDKPDVRFVIHLYLPRTLEGYYQETGRAGRDGNFSECVMYYCYKDARSLQNLIQRDEELS 810
Query: 631 EDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-QLCDVCVDG---PPEMK 686
E + L +Y NT+ CR K +++YF E F C + CD C D K
Sbjct: 811 ESGRESHLAKLRQVIQYCENTTDCRRKQVLQYFNETFDPANCHKQCDNCRDYNHVTSVEK 870
Query: 687 NLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMD 726
+ E A +++++ + ++ ++ ++ G+ +K +
Sbjct: 871 DCTEYAKDIIKLVKSIQDEQVTVLYCQDVFRGLSHKKITE 910
Score = 50 (22.7 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 442 DDEDVGN--SPMGKEMSVEFLENDSVDD 467
DD+D + + + KE ++F+E DS DD
Sbjct: 368 DDDDFLDFTTQLNKEREIDFIELDSDDD 395
Score = 38 (18.4 bits), Expect = 8.3e-27, Sum P(2) = 8.3e-27
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 573 GMGIDKLNVRRIIHYGWPQS-LEAYYQEAGRAGRD----GHLADCVL 614
G +DK +V RI Y Q + Y+ G D G AD VL
Sbjct: 922 GQSLDKNDVERIFFYLLSQQCIVEYHVMHGGFATDYVKVGKNADVVL 968
>TAIR|locus:2197394 [details] [associations]
symbol:RECQ4A species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0006310 "DNA
recombination" evidence=IEA;IMP] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IEA] [GO:0070417 "cellular
response to cold" evidence=IEP] [GO:0071215 "cellular response to
abscisic acid stimulus" evidence=IEP] [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IGI;RCA;IMP] [GO:0006974
"response to DNA damage stimulus" evidence=IGI;IMP] [GO:0043138
"3'-5' DNA helicase activity" evidence=IMP;IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
Prosite:PS00018 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0009506 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0000724 EMBL:U95973 GO:GO:0071215 GO:GO:0070417 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043138 HSSP:P15043 EMBL:AJ404473
EMBL:AY120761 EMBL:BT010133 IPI:IPI00538289 PIR:B86243
RefSeq:NP_172562.2 UniGene:At.10177 ProteinModelPortal:Q8L840
SMR:Q8L840 STRING:Q8L840 PaxDb:Q8L840 PRIDE:Q8L840
EnsemblPlants:AT1G10930.1 GeneID:837636 KEGG:ath:AT1G10930
TAIR:At1g10930 HOGENOM:HOG000148634 InParanoid:Q8L840 OMA:QLPALIC
PhylomeDB:Q8L840 ProtClustDB:PLN03137 Genevestigator:Q8L840
Uniprot:Q8L840
Length = 1188
Score = 395 (144.1 bits), Expect = 7.1e-54, Sum P(3) = 7.1e-54
Identities = 94/227 (41%), Positives = 137/227 (60%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W K+ KK FG+ S + Q+E ++A ++ D VL TG GKSL +Q+PAL+ G +
Sbjct: 437 WTRKLEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGIT 496
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQK--ALRGMYSIIYVCPETV 271
+VISPL+SL+ DQ L + + A L +G K+ Q+ + Y ++YV PE V
Sbjct: 497 LVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKV 556
Query: 272 IR---LIKPLQRLAESRGI-ALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
+ L++ L+ L SRG+ A F IDE HCVS+WGHDFRPDY+ L +L++ F
Sbjct: 557 AKSDSLLRHLENL-NSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFP------- 608
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+IP++ALTATAT V+ED++++L + F SF RPNL +SV
Sbjct: 609 --NIPVLALTATATASVKEDVVQALGLVNCVVF-RQSFNRPNLWYSV 652
Score = 235 (87.8 bits), Expect = 7.1e-54, Sum P(3) = 7.1e-54
Identities = 45/104 (43%), Positives = 70/104 (67%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
D IIY +R + +++ L FG KAA Y+ S+ Q + T++ ++++ ++ AT+A
Sbjct: 673 DECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVA 732
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
FGMGI+K +VR +IH+ P+S+E Y+QE GRAGRDG + CVLY
Sbjct: 733 FGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLY 776
Score = 57 (25.1 bits), Expect = 7.1e-54, Sum P(3) = 7.1e-54
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ-LCDVC 678
R E T+ RM+ RY N CR + + + GE F C+ CD C
Sbjct: 811 RLLETNTENLLRMV----RYCENEVECRRFLQLVHLGEKFDSTNCKKTCDNC 858
Score = 41 (19.5 bits), Expect = 6.7e-32, Sum P(3) = 6.7e-32
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 573 GMGIDKLNVRRIIHY 587
G + K+ V RI+HY
Sbjct: 918 GKHLSKIEVSRILHY 932
Score = 40 (19.1 bits), Expect = 1.5e-33, Sum P(3) = 1.5e-33
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 367 RPNLRFSVKHSKTSSRASYKKD 388
+P++RF + HS S Y ++
Sbjct: 739 KPDVRFVIHHSLPKSIEGYHQE 760
Score = 37 (18.1 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 473 GEFYGHSPHRDRDTDRSFERTDLLNKPAER 502
G + S + RD+ S +R L + P ER
Sbjct: 380 GRYACDSWNTPRDSSFSVDRYGLSSAPVER 409
>UNIPROTKB|H0YNU5 [details] [associations]
symbol:BLM "Bloom syndrome protein" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
TIGRFAMs:TIGR00614 HGNC:HGNC:1058 EMBL:AC021422 EMBL:AC124248
ProteinModelPortal:H0YNU5 SMR:H0YNU5 Ensembl:ENST00000560509
Bgee:H0YNU5 Uniprot:H0YNU5
Length = 1286
Score = 380 (138.8 bits), Expect = 1.5e-53, Sum P(2) = 1.5e-53
Identities = 90/223 (40%), Positives = 132/223 (59%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V VVISPL
Sbjct: 658 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLR 717
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE + RLI
Sbjct: 718 SLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLI 777
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 778 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 828
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
LTATA +V++DIL L + + F + SF R NL++ V K
Sbjct: 829 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYVLPKK 870
Score = 261 (96.9 bits), Expect = 1.5e-53, Sum P(2) = 1.5e-53
Identities = 72/210 (34%), Positives = 118/210 (56%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVV 567
P + G IIY +R+E ++A L G+ A AY+A L S V ++ +++ +V+
Sbjct: 887 PYDSG--IIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVIC 944
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTL 624
ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L Y +++ + L
Sbjct: 945 ATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRL 1004
Query: 625 LPSRRSEDQ-TKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQLC-DVCVD 680
+ + + T++ + L Y N + CR L+ YFGE+ F+ + C+ DV D
Sbjct: 1005 IMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCD 1064
Query: 681 GPPEMKNLK--EEANILMQVIAAYNEQSNS 708
+ K+ K + + + ++ E S+S
Sbjct: 1065 NCCKTKDYKTRDVTDDVKSIVRFVQEHSSS 1094
>UNIPROTKB|I3LFW3 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016591 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:FP565693
Ensembl:ENSSSCT00000025315 OMA:DALIIMP Uniprot:I3LFW3
Length = 432
Score = 357 (130.7 bits), Expect = 1.7e-53, Sum P(2) = 1.7e-53
Identities = 94/247 (38%), Positives = 129/247 (52%)
Query: 156 DWEVKVNSLLKKHFGHSSLKN-FQKEALSAWL-AHHDCLVLAATGSGKSLCFQIPALLTG 213
D E +V S LKK FG S K Q+ A+ A + D V TG+GKSLC+Q+PALL
Sbjct: 7 DPERRVRSTLKKVFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPALLAK 66
Query: 214 KVVVVISPLISLMHDQCSKLSKHGVTACFLGS--GQPDNK-----VEQKALRGMYSIIYV 266
+ +VISPLI+L+ DQ L + C L S + K +EQ+ R ++Y+
Sbjct: 67 GITIVISPLIALIQDQVDHLLALKIHVCSLNSKLSAQERKELLSDLEQEKPRT--KLLYI 124
Query: 267 CPETVIRL-IKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324
PE +P L+ L ++ +DE HCVS+WGHDFRPDY RL LR
Sbjct: 125 TPEMAASASFQPTLKSLLARHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLA---- 180
Query: 325 KSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT-SSRA 383
P +ALTATAT+QV+ED+ +LH+ + T FR NL + V+ + S
Sbjct: 181 -----HAPCVALTATATLQVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPY 235
Query: 384 SYKKDFC 390
+DFC
Sbjct: 236 GNLRDFC 242
Score = 230 (86.0 bits), Expect = 1.7e-53, Sum P(2) = 1.7e-53
Identities = 51/116 (43%), Positives = 71/116 (61%)
Query: 503 LSMLQEPLEDGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
L L + + GL+ I+Y TR+ +A L GV A AY+A L ++ V E+
Sbjct: 243 LKALGQKADKGLSGCGIVYCRTREACEQLAIELSARGVNAKAYHAGLKAAERTLVQNEWM 302
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
E K+ V+VATI+FGMG+DK NVR + H+ +S+ YYQE+GRAGRDG + C LY
Sbjct: 303 EGKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGRPSWCRLY 358
Score = 47 (21.6 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 303 HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
H F P+ R S L++ FG ++ K+ + +MA+
Sbjct: 4 HPFDPERRVRSTLKKVFGFDSFKTPLQESAIMAV 37
>UNIPROTKB|P54132 [details] [associations]
symbol:BLM "Bloom syndrome protein" species:9606 "Homo
sapiens" [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5'
DNA helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IEA] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
differentiation" evidence=IEA] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0031297
"replication fork processing" evidence=IDA] [GO:0000781
"chromosome, telomeric region" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0016605 "PML body" evidence=IDA]
[GO:0048478 "replication fork protection" evidence=NAS] [GO:0000800
"lateral element" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=NAS] [GO:0051259 "protein oligomerization" evidence=IDA]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IDA] [GO:0009378
"four-way junction helicase activity" evidence=IDA] [GO:0000405
"bubble DNA binding" evidence=IDA] [GO:0051880 "G-quadruplex DNA
binding" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0051782 "negative regulation of cell division"
evidence=IMP] [GO:0000085 "G2 phase of mitotic cell cycle"
evidence=NAS] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=NAS] [GO:0010165 "response to
X-ray" evidence=IDA] [GO:0016363 "nuclear matrix" evidence=IDA]
[GO:0031572 "G2 DNA damage checkpoint" evidence=NAS] [GO:0004386
"helicase activity" evidence=IDA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IMP] [GO:0006281 "DNA repair"
evidence=NAS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IMP;IDA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IMP] [GO:0000729 "DNA double-strand break processing"
evidence=IDA] [GO:0000733 "DNA strand renaturation" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
GO:GO:0005737 Pathway_Interaction_DB:telomerasepathway
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0000085 Gene3D:1.10.10.10 InterPro:IPR011991
Reactome:REACT_111183 GO:GO:0001673 GO:GO:0003697 GO:GO:0004003
GO:GO:0000724 GO:GO:0016363 GO:GO:0046632 GO:GO:0010165
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000723 GO:GO:0031572 GO:GO:0005657 eggNOG:COG0514 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
HOGENOM:HOG000095239 HOVERGEN:HBG004850 OrthoDB:EOG4640B3
GO:GO:0000729 EMBL:U39817 EMBL:AY886902 EMBL:BC093622 EMBL:BC101567
EMBL:BC115030 EMBL:BC115032 IPI:IPI00004859 PIR:A57570
RefSeq:NP_000048.1 UniGene:Hs.725208 PDB:2KV2 PDB:2RRD PDBsum:2KV2
PDBsum:2RRD ProteinModelPortal:P54132 SMR:P54132 DIP:DIP-33322N
IntAct:P54132 MINT:MINT-131918 STRING:P54132 PhosphoSite:P54132
DMDM:1705486 PaxDb:P54132 PRIDE:P54132 Ensembl:ENST00000355112
GeneID:641 KEGG:hsa:641 UCSC:uc002bpr.3 CTD:641
GeneCards:GC15P091260 HGNC:HGNC:1058 HPA:HPA005689 MIM:210900
MIM:604610 neXtProt:NX_P54132 Orphanet:125 PharmGKB:PA25369
InParanoid:P54132 OMA:NANDQAI ChEMBL:CHEMBL1293237
EvolutionaryTrace:P54132 GenomeRNAi:641 NextBio:2600
PMAP-CutDB:P54132 ArrayExpress:P54132 Bgee:P54132 CleanEx:HS_BLM
Genevestigator:P54132 GermOnline:ENSG00000197299 GO:GO:0000800
GO:GO:0045120 GO:GO:0036310 GO:GO:0000405 GO:GO:0009378
GO:GO:0051880 GO:GO:0051782 GO:GO:0045910 GO:GO:0045950
GO:GO:0046641 GO:GO:0051098 GO:GO:0031297 GO:GO:0048478
Uniprot:P54132
Length = 1417
Score = 380 (138.8 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 90/223 (40%), Positives = 132/223 (59%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V VVISPL
Sbjct: 658 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLR 717
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE + RLI
Sbjct: 718 SLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLI 777
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 778 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 828
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
LTATA +V++DIL L + + F + SF R NL++ V K
Sbjct: 829 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYVLPKK 870
Score = 261 (96.9 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 72/210 (34%), Positives = 118/210 (56%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVV 567
P + G IIY +R+E ++A L G+ A AY+A L S V ++ +++ +V+
Sbjct: 887 PYDSG--IIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVIC 944
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTL 624
ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L Y +++ + L
Sbjct: 945 ATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRL 1004
Query: 625 LPSRRSEDQ-TKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQLC-DVCVD 680
+ + + T++ + L Y N + CR L+ YFGE+ F+ + C+ DV D
Sbjct: 1005 IMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCD 1064
Query: 681 GPPEMKNLK--EEANILMQVIAAYNEQSNS 708
+ K+ K + + + ++ E S+S
Sbjct: 1065 NCCKTKDYKTRDVTDDVKSIVRFVQEHSSS 1094
>UNIPROTKB|E2RS76 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051880 "G-quadruplex DNA binding"
evidence=IEA] [GO:0051782 "negative regulation of cell division"
evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
[GO:0051098 "regulation of binding" evidence=IEA] [GO:0046641
"positive regulation of alpha-beta T cell proliferation"
evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
evidence=IEA] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045120
"pronucleus" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0010165 "response to
X-ray" evidence=IEA] [GO:0009378 "four-way junction helicase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005657 "replication
fork" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0002039
"p53 binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
"bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AAEX03002333 Ensembl:ENSCAFT00000019677 Uniprot:E2RS76
Length = 1407
Score = 377 (137.8 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
Identities = 89/223 (39%), Positives = 132/223 (59%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 647 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 706
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RL+
Sbjct: 707 SLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLL 766
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 767 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 817
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
LTATA +V++DIL L + + F + SF R NL++ V K
Sbjct: 818 LTATANPRVQKDILTQLKILQPQVFSM-SFNRHNLKYYVLPKK 859
Score = 262 (97.3 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
Identities = 73/210 (34%), Positives = 117/210 (55%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVV 567
P + G IIY +R+E ++A L G+ A AY+A L S V H +++ +V+
Sbjct: 876 PHDSG--IIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVIC 933
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTL 624
ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L Y +++ + L
Sbjct: 934 ATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRL 993
Query: 625 LPSRRSEDQ-TKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQLC-DVCVD 680
+ + ++ T++ + L Y N + CR L+ YFGE F+ + C+ DV D
Sbjct: 994 ILMEKDGNRHTRETHFNNLYSMVHYCENITECRRIQLLAYFGESGFNPDFCKKYPDVSCD 1053
Query: 681 GPPEMKNLK--EEANILMQVIAAYNEQSNS 708
+ K+ K + + + ++ E S+S
Sbjct: 1054 NCCKTKDYKTRDVTDDVKNIVRFVQEHSSS 1083
Score = 44 (20.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 456 SVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSM--LQEPLEDG 513
SV + ++D DV E + S T + +DL N PA + + + +PL
Sbjct: 50 SVSVAKTPVLNDKDVNVTEAFPFSEPLPHATSQQTRPSDLKNTPAGQQTRRTVSKPLLPD 109
Query: 514 LTII 517
L+++
Sbjct: 110 LSLV 113
>UNIPROTKB|J9PB86 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 CTD:641 OMA:NANDQAI
EMBL:AAEX03002333 RefSeq:XP_003434427.1 Ensembl:ENSCAFT00000042800
GeneID:100685609 KEGG:cfa:100685609 Uniprot:J9PB86
Length = 1420
Score = 377 (137.8 bits), Expect = 3.4e-53, Sum P(2) = 3.4e-53
Identities = 89/223 (39%), Positives = 132/223 (59%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 660 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 719
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RL+
Sbjct: 720 SLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLL 779
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 780 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 830
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
LTATA +V++DIL L + + F + SF R NL++ V K
Sbjct: 831 LTATANPRVQKDILTQLKILQPQVFSM-SFNRHNLKYYVLPKK 872
Score = 262 (97.3 bits), Expect = 3.4e-53, Sum P(2) = 3.4e-53
Identities = 73/210 (34%), Positives = 117/210 (55%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVV 567
P + G IIY +R+E ++A L G+ A AY+A L S V H +++ +V+
Sbjct: 889 PHDSG--IIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVIC 946
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTL 624
ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L Y +++ + L
Sbjct: 947 ATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRL 1006
Query: 625 LPSRRSEDQ-TKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQLC-DVCVD 680
+ + ++ T++ + L Y N + CR L+ YFGE F+ + C+ DV D
Sbjct: 1007 ILMEKDGNRHTRETHFNNLYSMVHYCENITECRRIQLLAYFGESGFNPDFCKKYPDVSCD 1066
Query: 681 GPPEMKNLK--EEANILMQVIAAYNEQSNS 708
+ K+ K + + + ++ E S+S
Sbjct: 1067 NCCKTKDYKTRDVTDDVKNIVRFVQEHSSS 1096
Score = 44 (20.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 456 SVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSM--LQEPLEDG 513
SV + ++D DV E + S T + +DL N PA + + + +PL
Sbjct: 50 SVSVAKTPVLNDKDVNVTEAFPFSEPLPHATSQQTRPSDLKNTPAGQQTRRTVSKPLLPD 109
Query: 514 LTII 517
L+++
Sbjct: 110 LSLV 113
>DICTYBASE|DDB_G0268512 [details] [associations]
symbol:wrn "Werner syndrome protein" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 SMART:SM00956 dictyBase:DDB_G0268512 GO:GO:0005524
GenomeReviews:CM000150_GR GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000003 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
RefSeq:XP_001732947.1 ProteinModelPortal:B0G0Y4
EnsemblProtists:DDB0238429 GeneID:8616084 KEGG:ddi:DDB_G0268512
OMA:FLFNKTE Uniprot:B0G0Y4
Length = 1136
Score = 394 (143.8 bits), Expect = 8.0e-53, Sum P(3) = 8.0e-53
Identities = 85/222 (38%), Positives = 126/222 (56%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
+D + K+ +LKK+FG S + Q E + ++ D + ATG+GKSLCFQIP L K
Sbjct: 283 NDEDNKIIEILKKYFGLHSFRPNQLEVIKHTISGGDSFLSMATGTGKSLCFQIPPLYLNK 342
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL-RGMYSIIYVCPETVIR 273
+V+SPL+SL+ DQ KL G+ L S + E + + +G Y+++Y+ PE +I
Sbjct: 343 TAIVVSPLVSLITDQTLKLKSLGIKVTKLSSDIKSSSKEYELIFKGYYNLVYITPERIIN 402
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
+ + L + I LFAIDE HC+S+WGH FR YR+L LR F +P+
Sbjct: 403 EYQSIGELVRNEKICLFAIDEAHCISQWGHSFRESYRKLQELRNQFPT---------VPI 453
Query: 334 MALTATATIQVREDILKSLHMSKGT-KFVLTSFFRPNLRFSV 374
MA+TATAT + DI+ +L + G K +S RPN+ + V
Sbjct: 454 MAVTATATKSIESDIINNLGIGNGNCKMFKSSKNRPNIYYKV 495
Score = 209 (78.6 bits), Expect = 8.0e-53, Sum P(3) = 8.0e-53
Identities = 45/93 (48%), Positives = 61/93 (65%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
TIIY T + + ++LC +++ Y++ L Q F NK EV+VATIAFGM
Sbjct: 527 TIIYCTTIQIANELNRFLCDNKIQSNVYHSQLGDKQRDETLKNFLFNKTEVIVATIAFGM 586
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607
GIDK +VR II+YG +S+E +YQE+GRAGRDG
Sbjct: 587 GIDKHDVRLIINYGASKSVEDFYQESGRAGRDG 619
Score = 73 (30.8 bits), Expect = 8.0e-53, Sum P(3) = 8.0e-53
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 649 MNTSCCRAKILVEYFGEDF---SHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
+N CR ++L+E FGE+F ++ C CD CV E+++ + N+ +V+
Sbjct: 694 INKVKCRRQMLLEAFGEEFIIDANNGCASCDNCV----ELRDSSDYINLSFEVL 743
Score = 46 (21.3 bits), Expect = 3.0e-15, Sum P(3) = 3.0e-15
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 435 NIGDGYYDDEDVGNSPMGKEMSVEFLENDS-VDD 467
N D +YDD D N +F+ ND+ +DD
Sbjct: 91 NNNDDFYDDYDTTNDYFD-----DFINNDNHIDD 119
Score = 44 (20.5 bits), Expect = 8.5e-50, Sum P(3) = 8.5e-50
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 683 PEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPN 729
PE+KN + N + Q + Q + D+ + S + K + +PN
Sbjct: 852 PEIKNTQFHRNNITQQQSQQQSQKLNNDNSNNNESKLLKIEAFTKPN 898
>SGD|S000004802 [details] [associations]
symbol:SGS1 "Nucleolar DNA helicase of the RecQ family"
species:4932 "Saccharomyces cerevisiae" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IGI;IMP] [GO:0031860 "telomeric 3' overhang
formation" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000706 "meiotic
DNA double-strand break processing" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0010520
"regulation of reciprocal meiotic recombination" evidence=IGI]
[GO:0031573 "intra-S DNA damage checkpoint" evidence=IGI;IMP]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI;IMP] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IGI] [GO:0000729 "DNA double-strand break processing"
evidence=IGI] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0031422 "RecQ helicase-Topo III complex" evidence=IDA;IPI]
[GO:0001302 "replicative cell aging" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
molecule formation" evidence=IGI] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0051276 "chromosome organization"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 SGD:S000004802
GO:GO:0005524 GO:GO:0005730 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0001302 GO:GO:0003676 EMBL:BK006946 GO:GO:0000070
GO:GO:0004003 GO:GO:0000724 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000706
GO:GO:0000722 eggNOG:COG0514 GeneTree:ENSGT00550000074520 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0031573
EMBL:Z47815 GO:GO:0031292 GO:GO:0031860 GO:GO:0006268
OrthoDB:EOG4XSPZ5 GO:GO:0031422 EMBL:U22341 EMBL:L07870 PIR:S50918
RefSeq:NP_013915.1 PDB:1D8B PDBsum:1D8B ProteinModelPortal:P35187
SMR:P35187 DIP:DIP-2911N IntAct:P35187 MINT:MINT-442647
STRING:P35187 PeptideAtlas:P35187 EnsemblFungi:YMR190C
GeneID:855228 KEGG:sce:YMR190C CYGD:YMR190c HOGENOM:HOG000141897
OMA:TIFEICD EvolutionaryTrace:P35187 NextBio:978762
Genevestigator:P35187 GermOnline:YMR190C GO:GO:0010947
InterPro:IPR022758 Pfam:PF11408 Uniprot:P35187
Length = 1447
Score = 338 (124.0 bits), Expect = 2.1e-52, Sum P(2) = 2.1e-52
Identities = 88/235 (37%), Positives = 126/235 (53%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-TGKV 215
W +V L + F + Q EA++A L D VL TG GKSLC+Q+PA++ +GK
Sbjct: 662 WSDEVLYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKT 721
Query: 216 ---VVVISPLISLMHDQCSKLSKHGVTACFLGS-GQPDNKVEQKAL--RGMYSIIYVCPE 269
+VISPLISLM DQ L + A S G + + + L G+ ++Y+ PE
Sbjct: 722 HGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLVYISPE 781
Query: 270 TVI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
+ + + + RL +A +DE HCVS WGHDFRPDY+ L + +
Sbjct: 782 MISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYP------ 835
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
DIP++ALTATA+ QVR DI+ +L + K F+ SF R NL + V + KT +
Sbjct: 836 ---DIPMIALTATASEQVRMDIIHNLEL-KEPVFLKQSFNRTNLYYEV-NKKTKN 885
Score = 296 (109.3 bits), Expect = 2.1e-52, Sum P(2) = 2.1e-52
Identities = 85/301 (28%), Positives = 156/301 (51%)
Query: 488 RSFERTDL---LNKPA-----ERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539
+SF RT+L +NK E ++ ++ IIY ++K + + G+K
Sbjct: 868 QSFNRTNLYYEVNKKTKNTIFEICDAVKSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKC 927
Query: 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599
A Y+A + + V + ++++V+ AT+AFGMGIDK +VR + H+ P++LE YYQE
Sbjct: 928 AYYHAGMEPDERLSVQKAWQADEIQVICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQE 987
Query: 600 AGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED-QTKQAY-RMLSDCFRYGMNTSCC 654
GRAGRDG+ + C+ Y ++ +M T++ ++ D + K+ + L Y N + C
Sbjct: 988 TGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKNLDRENKEKHLNKLQQVMAYCDNVTDC 1047
Query: 655 RAKILVEYFGEDFSHEKCQL-CDVCVDGPP---EMKNLKEEANILMQVIAAY-NEQSNSM 709
R K+++ YF EDF + C CD C + E +++ E A +++++ + NE+ +
Sbjct: 1048 RRKLVLSYFNEDFDSKLCHKNCDNCRNSANVINEERDVTEPAKKIVKLVESIQNERVTII 1107
Query: 710 DDDDGIYSGIKKQKFM--DRPNLKMF-VSKIREQSQ-KYLATDLLWWRGLAR--IMENKG 763
D ++ G + K + + L+ + K ++S+ + + L+ R L IM N G
Sbjct: 1108 YCQD-VFKGSRSSKIVQANHDTLEEHGIGKSMQKSEIERIFFHLITIRVLQEYSIMNNSG 1166
Query: 764 Y 764
+
Sbjct: 1167 F 1167
Score = 44 (20.5 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 22/84 (26%), Positives = 37/84 (44%)
Query: 9 DEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVRNSKGKSVSWSSKCVTENGK 68
DEV+ +L E+ +E V + ++L + GKS+ + V ++GK
Sbjct: 664 DEVLYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVL---MPTGGGKSLCYQLPAVVKSGK 720
Query: 69 TLGKR-TLSSANSLGQMRQASLLD 91
T G +S SL Q + LL+
Sbjct: 721 THGTTIVISPLISLMQDQVEHLLN 744
>ZFIN|ZDB-GENE-070702-5 [details] [associations]
symbol:blm "Bloom syndrome" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0045950 "negative
regulation of mitotic recombination" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
ZFIN:ZDB-GENE-070702-5 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 EMBL:CABZ01019975
EMBL:CABZ01036951 EMBL:CABZ01036952 EMBL:CABZ01036953
EMBL:CABZ01036954 EMBL:CABZ01036955 EMBL:CABZ01036956
EMBL:CABZ01036957 EMBL:CABZ01036958 EMBL:CABZ01036959
EMBL:CABZ01036960 EMBL:CABZ01036961 EMBL:CABZ01036962
EMBL:CABZ01036963 EMBL:CABZ01036964 EMBL:CABZ01039756 EMBL:CR450750
IPI:IPI00934934 Ensembl:ENSDART00000110746 Uniprot:E7EZY7
Length = 1420
Score = 372 (136.0 bits), Expect = 3.3e-52, Sum P(2) = 3.3e-52
Identities = 93/223 (41%), Positives = 127/223 (56%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + Q EA++A L D VL TG GKSLC+Q+PA ++ V VVISPL
Sbjct: 650 IFHKKFGLHQFRFNQLEAINASLLGEDTFVLMPTGGGKSLCYQLPACVSAGVTVVISPLR 709
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A L + D++ + ++ ++Y PE V R+I
Sbjct: 710 SLIVDQVQKLTTLDICATSLSGDKKDSEAARIYMQLSRKDPAIKLLYATPEKVCASGRMI 769
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
LQ L E +A IDE HCVS+WGHDFRPDY+RL LR F ++P+MA
Sbjct: 770 SALQNLYERGLLARLVIDEAHCVSQWGHDFRPDYKRLHELRRMFP---------NVPIMA 820
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
LTATAT +V++DIL L M++ F + SF R NL++SV K
Sbjct: 821 LTATATPRVQKDILNQLAMTRPQVFTM-SFNRNNLKYSVLPKK 862
Score = 258 (95.9 bits), Expect = 3.3e-52, Sum P(2) = 3.3e-52
Identities = 66/182 (36%), Positives = 103/182 (56%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVV 567
P + G I+Y +R + ++A L G+ A AY+A L S V ++ +++ +V+
Sbjct: 879 PRDSG--IVYCLSRNDCDTLADSLQRAGIAALAYHAGLSDSDREYVQNKWINQDGCQVMC 936
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTL 624
ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ CVL Y+++ + L
Sbjct: 937 ATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGEISHCVLFYSYSDVIRIKRL 996
Query: 625 LPSRRSEDQTKQAYRM--LSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQ-----LCD 676
+ + +Q +A + L + N + CR L+ YFGE F+ C+ +CD
Sbjct: 997 IAMDKDGNQQSKATHINNLHSMVHFCENVAECRRIQLLAYFGEHTFNTSFCKEHPEVICD 1056
Query: 677 VC 678
C
Sbjct: 1057 NC 1058
>RGD|1308810 [details] [associations]
symbol:Blm "Bloom syndrome, RecQ helicase-like" species:10116
"Rattus norvegicus" [GO:0000079 "regulation of cyclin-dependent
protein serine/threonine kinase activity" evidence=ISO] [GO:0000405
"bubble DNA binding" evidence=ISO] [GO:0000723 "telomere
maintenance" evidence=ISO] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0000800 "lateral element" evidence=ISO]
[GO:0001673 "male germ cell nucleus" evidence=ISO] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005657 "replication
fork" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic
process" evidence=ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0009378 "four-way junction helicase activity"
evidence=ISO] [GO:0010165 "response to X-ray" evidence=ISO]
[GO:0016363 "nuclear matrix" evidence=ISO] [GO:0016605 "PML body"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031297 "replication fork processing" evidence=ISO] [GO:0036310
"annealing helicase activity" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
[GO:0045120 "pronucleus" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0045950 "negative regulation of mitotic
recombination" evidence=ISO] [GO:0046632 "alpha-beta T cell
differentiation" evidence=ISO] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=ISO] [GO:0051098
"regulation of binding" evidence=ISO] [GO:0051259 "protein
oligomerization" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=ISO] [GO:0051782 "negative regulation of
cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] [GO:0000781 "chromosome, telomeric region"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR012532
Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 RGD:1308810 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 IPI:IPI00561580 Ensembl:ENSRNOT00000030936
UCSC:RGD:1308810 ArrayExpress:D3ZSJ5 Uniprot:D3ZSJ5
Length = 999
Score = 385 (140.6 bits), Expect = 1.8e-51, Sum P(2) = 1.8e-51
Identities = 90/223 (40%), Positives = 133/223 (59%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ +K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 649 IFRKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 708
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 709 SLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLI 768
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 769 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQRFPS---------VPVMA 819
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
LTATA +V++DIL L + + F + SF R NL++ V K
Sbjct: 820 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYVLPKK 861
Score = 232 (86.7 bits), Expect = 1.8e-51, Sum P(2) = 1.8e-51
Identities = 51/108 (47%), Positives = 71/108 (65%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVV 567
P + G IIY +RKE ++A L G+ A AY+A L S V H +++ +V+
Sbjct: 878 PYDSG--IIYCLSRKECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVIC 935
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
ATIAFGMGIDK +VR ++H P+S+E YYQE+GRAGRDG ++ CVL+
Sbjct: 936 ATIAFGMGIDKPDVRFVVHASLPKSVEGYYQESGRAGRDGEISHCVLF 983
>DICTYBASE|DDB_G0272384 [details] [associations]
symbol:DDB_G0272384 "Bloom syndrome-like protein"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0272384 GO:GO:0005524
GO:GO:0005634 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 EMBL:AAFI02000008 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 KO:K10901
TIGRFAMs:TIGR00614 RefSeq:XP_645178.2 ProteinModelPortal:Q55A06
EnsemblProtists:DDB0233085 GeneID:8618350 KEGG:ddi:DDB_G0272384
OMA:YQQTGRA Uniprot:Q55A06
Length = 973
Score = 348 (127.6 bits), Expect = 2.6e-51, Sum P(4) = 2.6e-51
Identities = 89/252 (35%), Positives = 132/252 (52%)
Query: 151 VEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
+++ +W V + + FG+ +N Q EA+++ L D V TG GKSLCFQIP++
Sbjct: 456 LKLKREWHELVETCNRDIFGNKEFRNLQIEAINSILHDRDTFVSLPTGGGKSLCFQIPSI 515
Query: 211 LTGK-VVVVISPLISLMHDQCSKLSKHGVTACFLGSG--QPDNK-VEQKALRG---MYSI 263
+ + V VISPL++LM DQ KL G+ A + S Q +N+ V + L G +
Sbjct: 516 VDHRGVTFVISPLLALMQDQVHKLKSLGIPAESINSSGSQRENRDVLDQLLNGETCKLKL 575
Query: 264 IYVCPETVIR--LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGA 321
IY+ PE + + + L +L + + +DE HC+S+WGH FRP YR +S R+ F +
Sbjct: 576 IYITPERLAQSEFLHLLDQLYDQGRLRRLVVDEAHCISEWGHSFRPKYRLISTFRDRFPS 635
Query: 322 NNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
+P+ A TA+AT V DI SL M + +SF RPNL + V+ K S
Sbjct: 636 ---------VPISAFTASATPNVEIDIKNSLKMVNPIT-INSSFLRPNLLYQVRQ-KQSD 684
Query: 382 RASYKKDFCQLI 393
S KD I
Sbjct: 685 EESLLKDIYNFI 696
Score = 237 (88.5 bits), Expect = 2.6e-51, Sum P(4) = 2.6e-51
Identities = 46/106 (43%), Positives = 69/106 (65%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY T +E +A YL G+ + Y+A L +Q ++ ++ + ++V TIAFGMG
Sbjct: 706 IIYCATVRECEIVADYLSERGLSSNFYHAKLSNTQRSKLQKDWTNGEFKIVCTTIAFGMG 765
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621
IDK + R +IH+ PQS+E+YYQ+ GRAGRDG +DC+L+ N S +
Sbjct: 766 IDKGDTRFVIHHSMPQSMESYYQQTGRAGRDGKHSDCLLFYNKSDL 811
Score = 80 (33.2 bits), Expect = 2.6e-51, Sum P(4) = 2.6e-51
Identities = 23/80 (28%), Positives = 34/80 (42%)
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-QLCDVCVDGPPEMKNLKEE 691
QT ML + S CR L+ YFGE+ + C +CD+C+ N + +
Sbjct: 875 QTSTKLEMLDSVASFCSTQSKCRRVTLLNYFGEN--SKSCGNMCDICISNSNSNSNNRSK 932
Query: 692 A--NILMQVIAAYNEQSNSM 709
A N + YN S S+
Sbjct: 933 AKQNQIDYSERIYNRNSYSI 952
Score = 39 (18.8 bits), Expect = 2.6e-51, Sum P(4) = 2.6e-51
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 152 EIGSDWEVKVNSLLKK 167
EI DW +K +KK
Sbjct: 100 EIDFDWSMKAKKKIKK 115
>ZFIN|ZDB-GENE-050809-134 [details] [associations]
symbol:recql "RecQ protein-like (DNA helicase
Q1-like)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050809-134 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
EMBL:BX914215 IPI:IPI00933301 Ensembl:ENSDART00000101198
Uniprot:F1Q4T3
Length = 640
Score = 320 (117.7 bits), Expect = 5.3e-50, Sum P(2) = 5.3e-50
Identities = 86/230 (37%), Positives = 127/230 (55%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
EV+VN L F S + Q+ A++ ++ D ++ TG GKSLC+Q+PAL + +
Sbjct: 84 EVQVN--LCNIFQLSKFRPLQRAAINLSMSGKDLFLVMPTGRGKSLCYQLPALCSKGFTL 141
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLG--SGQPDNKVEQKALRGM------YSIIYVCPE 269
VI+PL+SLM DQ L V A L S + D+K + L GM + ++YV PE
Sbjct: 142 VIAPLVSLMEDQLMYLQSVNVPAVTLNASSSKEDSK---RILAGMTDKNSPFKLLYVTPE 198
Query: 270 TVIR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
+ + L+ L++ +A A+DEVHC S+WGHDFRPDY+ L +L+ F
Sbjct: 199 KIAKSKLLMSKLEKAFNMGLLARIAVDEVHCCSQWGHDFRPDYKLLGILKRQFP------ 252
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTS-FFRPNLRFSVK 375
++PL+ LTATAT V +D K L + + LT+ F RPNL + V+
Sbjct: 253 ---NVPLIGLTATATSNVLKDCQKILCVQEPV--TLTAPFNRPNLYYEVR 297
Score = 279 (103.3 bits), Expect = 5.3e-50, Sum P(2) = 5.3e-50
Identities = 66/198 (33%), Positives = 112/198 (56%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+YV ++K+ +A L + A Y+A++ S VH + K++VVVAT+AFGMG
Sbjct: 322 IVYVFSQKDAEVVATELQKRDIVAQPYHANMEPSHKSLVHQRWSSKKIQVVVATVAFGMG 381
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR +IH+ +S+E YYQE+GRAGRD ADC+++ + + E+ +
Sbjct: 382 IDKADVRFVIHHTISKSIENYYQESGRAGRDDSPADCIVFFGFMDIFRISTMVVMENTGQ 441
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-QLCDVCVDGPPEMK-NLKEEAN 693
Q L + Y N CR ++ +F E ++ E+C ++CDVC G + ++ + A
Sbjct: 442 QK---LHNMVAYCQNVDRCRRAMMAIHFDEVWNDEECNEMCDVCRHGNDYITMDITQHAR 498
Query: 694 ILMQVIAAYNEQSNSMDD 711
++ ++ E ++SMD+
Sbjct: 499 DVLHIV----ELASSMDE 512
>UNIPROTKB|F1NT69 [details] [associations]
symbol:F1NT69 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00819481
ProteinModelPortal:F1NT69 Ensembl:ENSGALT00000038980
ArrayExpress:F1NT69 Uniprot:F1NT69
Length = 451
Score = 329 (120.9 bits), Expect = 1.5e-49, Sum P(2) = 1.5e-49
Identities = 89/242 (36%), Positives = 125/242 (51%)
Query: 160 KVNSLLKKHFGHSSLK-NFQKEALSAWL-AHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
+V L K FG S K + Q+ A A + D V TG+GKSLC+Q+PA+L + +
Sbjct: 20 RVRKTLGKVFGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITI 79
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKV--EQKALRGMYSIIYVCPE-TV 271
VISPLI+L+ DQ L + AC L S Q + + + + ++Y+ PE
Sbjct: 80 VISPLIALIQDQVDHLLALKIKACSLNSKLSAQEKKTILADLASEKPQIKLLYITPEMAA 139
Query: 272 IRLIKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
+P L L ++ IDE HCVS+WGHDFRPDY RL LR +
Sbjct: 140 ASSFQPTLNSLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRIP---------N 190
Query: 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK--TSSRASYKKD 388
P +ALTATAT QV++DI+ +L + + T FR NL + V+ + T A+ K D
Sbjct: 191 TPCVALTATATKQVQDDIVTALKLKQPLATFKTPCFRSNLFYDVQFKELLTDPYANLK-D 249
Query: 389 FC 390
FC
Sbjct: 250 FC 251
Score = 235 (87.8 bits), Expect = 1.5e-49, Sum P(2) = 1.5e-49
Identities = 68/186 (36%), Positives = 95/186 (51%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G I+Y R +A L GVKA AY+A L + V E+ E K+ V+VATI+F
Sbjct: 266 GCGIVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVATISF 325
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS---MPTLLPSRR 629
GMG+DK NVR + H+ +S+ YYQE+GRAGRDG + C LY + + + L+
Sbjct: 326 GMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIKKEL 385
Query: 630 SEDQTKQAYRMLSD---CFRYGMNTS-C----CRAKILVEYFGEDFSH-EKCQLCDVCVD 680
S+ Q K+ SD + S C CR + +YFG+ KC CD C +
Sbjct: 386 SKIQEKKGTLKESDKSVMTAFDAIVSFCEELGCRHAAIAKYFGDVTPPCNKC--CDYCKN 443
Query: 681 GPPEMK 686
P +K
Sbjct: 444 -PEAVK 448
Score = 42 (19.8 bits), Expect = 2.7e-29, Sum P(2) = 2.7e-29
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 755 LARIMENKGYIREGDDRV 772
L++I E KG ++E D V
Sbjct: 385 LSKIQEKKGTLKESDKSV 402
>UNIPROTKB|O94762 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0006259 "DNA metabolic process"
evidence=NAS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0032508 "DNA duplex unwinding" evidence=NAS;TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031965 "nuclear membrane" evidence=IDA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0006281 GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0016591 eggNOG:COG0514
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AB006533 EMBL:AF135183
EMBL:AB042823 EMBL:AB042824 EMBL:AB042825 EMBL:BC016911
EMBL:AL136869 IPI:IPI00220819 IPI:IPI00220820 IPI:IPI01015246
RefSeq:NP_001003715.1 RefSeq:NP_001003716.1 RefSeq:NP_004250.4
UniGene:Hs.632229 ProteinModelPortal:O94762 SMR:O94762
DIP:DIP-32964N IntAct:O94762 MINT:MINT-1378331 STRING:O94762
PhosphoSite:O94762 PaxDb:O94762 PRIDE:O94762
Ensembl:ENST00000317905 Ensembl:ENST00000340830
Ensembl:ENST00000420326 Ensembl:ENST00000584999 GeneID:9400
KEGG:hsa:9400 UCSC:uc002joz.4 UCSC:uc002jpb.2 UCSC:uc010dgl.3
CTD:9400 GeneCards:GC17M073622 HGNC:HGNC:9950 HPA:HPA029970
HPA:HPA029971 MIM:603781 neXtProt:NX_O94762 PharmGKB:PA34317
HOGENOM:HOG000206773 HOVERGEN:HBG057065 InParanoid:O94762 KO:K10902
OrthoDB:EOG46WZ7X PhylomeDB:O94762 ChiTaRS:RECQL5 GenomeRNAi:9400
NextBio:35211 ArrayExpress:O94762 Bgee:O94762 CleanEx:HS_RECQL5
Genevestigator:O94762 GermOnline:ENSG00000108469 InterPro:IPR010716
Pfam:PF06959 ProDom:PD120154 Uniprot:O94762
Length = 991
Score = 358 (131.1 bits), Expect = 4.4e-49, Sum P(2) = 4.4e-49
Identities = 94/245 (38%), Positives = 125/245 (51%)
Query: 156 DWEVKVNSLLKKHFGHSSLKN-FQKEALSAWL-AHHDCLVLAATGSGKSLCFQIPALLTG 213
D E +V S LKK FG S K Q+ A A + + D V TG+GKSLC+Q+PALL
Sbjct: 11 DPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAK 70
Query: 214 KVVVVISPLISLMHDQCSKLSKHGVTACFLGS--GQPDNK---VEQKALRGMYSIIYVCP 268
+ +V+SPLI+L+ DQ L V L S + K + + + I+Y+ P
Sbjct: 71 GITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITP 130
Query: 269 ETVIRL-IKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
E +P L L ++ +DE HCVS+WGHDFRPDY RL LR G
Sbjct: 131 EMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLG------ 184
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT-SSRASY 385
P +ALTATAT QV+ED+ +LH+ K T FR NL + V+ + S
Sbjct: 185 ---HAPCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGN 241
Query: 386 KKDFC 390
KDFC
Sbjct: 242 LKDFC 246
Score = 238 (88.8 bits), Expect = 4.4e-49, Sum P(2) = 4.4e-49
Identities = 73/234 (31%), Positives = 109/234 (46%)
Query: 503 LSMLQEPLEDGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
L L + + GL+ I+Y TR+ +A L GV A AY+A L S+ V ++
Sbjct: 247 LKALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWM 306
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
E K+ V+VATI+FGMG+DK NVR + H+ +S+ YYQE+GRAGRDG + C LY + +
Sbjct: 307 EEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRN 366
Query: 620 SMPTL----------LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSH 669
+ L +R + +A M D CR + +YFG+
Sbjct: 367 DRDQVSFLIRKEVAKLQEKRGNKASDKATIMAFDALVTFCEELGCRHAAIAKYFGDALP- 425
Query: 670 EKCQL-CDVCVDGPPEMKNLKE-EANILMQVIAAYNEQSNSMDDDDGIYSGIKK 721
C CD C + + L+ E + Q N D + +Y G +K
Sbjct: 426 -ACAKGCDHCQNPTAVRRRLEALERSSSWSKTCIGPSQGNGFDPE--LYEGGRK 476
Score = 49 (22.3 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 27/98 (27%), Positives = 46/98 (46%)
Query: 123 EEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEAL 182
+E+KE ++ K ++ L ++ P E+ S ++ +NSL+ +H S L + +
Sbjct: 107 QERKELLADLERE-KPQTKILYIT-P-EMAASSSFQPTLNSLVSRHL-LSYLVVDEAHCV 162
Query: 183 SAWLAHH---DCLVLAATGS--GKSLCFQIPALLTGKV 215
S W H D L L A S G + C + A T +V
Sbjct: 163 SQW-GHDFRPDYLRLGALRSRLGHAPCVALTATATPQV 199
Score = 43 (20.2 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKG 357
F P+ R S L++ FG ++ K+ PL A ++ +D+ + G
Sbjct: 10 FDPERRVRSTLKKVFGFDSFKT-----PLQESATMAVVKGNKDVFVCMPTGAG 57
>UNIPROTKB|E1BKM5 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
EMBL:DAAA02049519 IPI:IPI00698201 RefSeq:NP_001179255.1
UniGene:Bt.62459 Ensembl:ENSBTAT00000015555 GeneID:512590
KEGG:bta:512590 OMA:DPKIEEF NextBio:20870462 Uniprot:E1BKM5
Length = 987
Score = 349 (127.9 bits), Expect = 6.4e-49, Sum P(2) = 6.4e-49
Identities = 93/247 (37%), Positives = 127/247 (51%)
Query: 156 DWEVKVNSLLKKHFGHSSLKN-FQKEALSAWL-AHHDCLVLAATGSGKSLCFQIPALLTG 213
D E +V S LKK FG S K Q++A+ A + D V TG+GKSLC+Q+PALL
Sbjct: 10 DPERRVRSTLKKVFGFDSFKTPLQEKAIMAVVKGDKDVFVCMPTGAGKSLCYQLPALLAK 69
Query: 214 KVVVVISPLISLMHDQCSKLSKHGVTACFLGS--GQPDNK-----VEQKALRGMYSIIYV 266
+ +V+SPLI+L+ DQ L V L S + K +EQ+ + ++Y+
Sbjct: 70 GITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSVQERKELLSDLEQE--KPQTKLLYI 127
Query: 267 CPETVIRL-IKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324
PE +P L L ++ +DE HCVS+WGHDFRPDY RL LR
Sbjct: 128 TPEMAASTSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLA---- 183
Query: 325 KSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT-SSRA 383
D P +ALTATAT QVRED+ +LH+ + T FR NL + V+ +
Sbjct: 184 -----DAPCVALTATATPQVREDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLPDPY 238
Query: 384 SYKKDFC 390
+DFC
Sbjct: 239 GNLRDFC 245
Score = 246 (91.7 bits), Expect = 6.4e-49, Sum P(2) = 6.4e-49
Identities = 68/190 (35%), Positives = 95/190 (50%)
Query: 503 LSMLQEPLEDGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
L L + + GL+ IIY TR+ +A L GV A AY+A L + V E+
Sbjct: 246 LKALGQKADKGLSGCGIIYCRTREACEQLATELSYRGVNAKAYHAGLKAPERTLVQNEWM 305
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
E K+ V+VATI+FGMG+DK NVR + H+ +S+ YYQE+GRAGRDG + C LY + S
Sbjct: 306 EEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRS 365
Query: 620 SMPTL----------LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSH 669
+ L +R + +A + D S CR + +YFG+ S
Sbjct: 366 DRDQVSFLIRKEVAKLQEKRGNKASDKAAVLAFDALVAFCEESGCRHAAIAKYFGD--SP 423
Query: 670 EKCQL-CDVC 678
C CD C
Sbjct: 424 PACTKGCDCC 433
Score = 40 (19.1 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKG 357
F P+ R S L++ FG ++ K+ PL A ++ +D+ + G
Sbjct: 9 FDPERRVRSTLKKVFGFDSFKT-----PLQEKAIMAVVKGDKDVFVCMPTGAG 56
>TIGR_CMR|SPO_0107 [details] [associations]
symbol:SPO_0107 "ATP-dependent DNA helicase RecQ"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
GO:GO:0009432 HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389
OMA:YCLSRAK RefSeq:YP_165381.1 ProteinModelPortal:Q5LWQ8
GeneID:3194995 KEGG:sil:SPO0107 PATRIC:23373451
ProtClustDB:CLSK933158 Uniprot:Q5LWQ8
Length = 679
Score = 344 (126.2 bits), Expect = 3.5e-48, Sum P(2) = 3.5e-48
Identities = 88/221 (39%), Positives = 120/221 (54%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LL+ FG + + Q+E A + L + TG GKSLCFQ+PAL+ V VVISPLI
Sbjct: 7 LLRDVFGFDAFRPGQEEIAQAVAEGENVLAIMPTGGGKSLCFQLPALMREGVTVVISPLI 66
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ--KALR-GMYSIIYVCPETVIR--LIKPL 278
+LM DQ L + GV A L SG + E +AL G ++Y+ PE + + L
Sbjct: 67 ALMRDQVRSLQEAGVEAGALTSGNTPEETEAVWQALEAGRLKLLYMAPERLASGAAMGML 126
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+R+ G++L A+DE HCVS+WGHDFRPDY R+ LR G +PL A TA
Sbjct: 127 RRI----GVSLIAVDEAHCVSQWGHDFRPDYLRIGELRRALG----------VPLAAFTA 172
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPN--LRFSVKHS 377
TA + + +I+ L + + L F RPN L F+ K S
Sbjct: 173 TADAETQAEIVAKLFDGEEPRSFLRGFDRPNIHLAFAAKDS 213
Score = 237 (88.5 bits), Expect = 3.5e-48, Sum P(2) = 3.5e-48
Identities = 67/176 (38%), Positives = 92/176 (52%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y TR +T ++A+ L G A Y+ + R V T F +VVAT+AFGMG
Sbjct: 231 IVYCGTRAKTETLAQALREDGHSACHYHGGMEAEDRRIVETRFAREDGLIVVATVAFGMG 290
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSE-DQ- 633
IDK ++R + H P+S+EAYYQE GRAGRDG A+ + P + RRS+ D+
Sbjct: 291 IDKPDIRWVAHADLPKSIEAYYQEIGRAGRDGGPAETLTLFG----PDDIRLRRSQIDEG 346
Query: 634 TKQAYRMLSDCFRY----GM-NTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
R +D R G+ CR + L+ YFGE + C CD+C D P E
Sbjct: 347 LAPPERRAADHARLNALLGLAEAMTCRRQTLLGYFGE--TEITCGKCDLC-DSPAE 399
>UNIPROTKB|F1PAG8 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
OMA:DPKIEEF EMBL:AAEX03006295 RefSeq:XP_540436.2
Ensembl:ENSCAFT00000007842 GeneID:483317 KEGG:cfa:483317
Uniprot:F1PAG8
Length = 989
Score = 345 (126.5 bits), Expect = 6.1e-48, Sum P(2) = 6.1e-48
Identities = 90/245 (36%), Positives = 125/245 (51%)
Query: 156 DWEVKVNSLLKKHFGHSSLKN-FQKEALSAWL-AHHDCLVLAATGSGKSLCFQIPALLTG 213
D E +V S LKK FG S K Q+ A A + D V TG+GKSLC+Q+PALL
Sbjct: 7 DRERRVRSTLKKVFGFDSFKTPLQESATMAVVRGDKDVFVCMPTGAGKSLCYQLPALLAK 66
Query: 214 KVVVVISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKV--EQKALRGMYSIIYVCP 268
+ +V+SPLI+L+ DQ L V L S Q ++ + + + ++Y+ P
Sbjct: 67 GITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQEKKELLSDLEREKPQTKLLYITP 126
Query: 269 ETVIR-LIKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
E +P L L ++ +DE HCVS+WGHDFRPDY RL LR
Sbjct: 127 EMAASPSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGTLRSRLA------ 180
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT-SSRASY 385
P +ALTATAT+QV+ED+ +LH+ + T FR NL + V+ + S
Sbjct: 181 ---HAPCIALTATATLQVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGN 237
Query: 386 KKDFC 390
+DFC
Sbjct: 238 LRDFC 242
Score = 241 (89.9 bits), Expect = 6.1e-48, Sum P(2) = 6.1e-48
Identities = 76/221 (34%), Positives = 104/221 (47%)
Query: 510 LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVAT 569
L G I+Y TR+ +A L GV A AY+A L S+ V E+ E K+ V+VAT
Sbjct: 254 LLSGCGIVYCRTREACEQLATELSYRGVNAKAYHAGLKASERTLVQNEWMEEKVPVIVAT 313
Query: 570 IAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRR 629
I+FGMG+DK NVR + H+ +S+ YYQE+GRAGRDG + C LY + + + R
Sbjct: 314 ISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIR 373
Query: 630 SEDQTKQAYR--MLSD---CFRY-GMNTSC----CRAKILVEYFGEDFSHEKCQL-CDVC 678
E Q R SD + + T C CR + +YFG+ + C CD C
Sbjct: 374 KEVAKLQEKRGNKASDKAAILAFDALVTFCEELGCRHAAIAKYFGD--APPACTKGCDHC 431
Query: 679 VDGPPEMKNLKE-EANILMQVIAAYNEQSNSMDDDDGIYSG 718
D K L E + Q N D + +Y G
Sbjct: 432 RDPAALRKRLDALEHSSSWNKTCIGPSQGNGFDPE--LYEG 470
Score = 39 (18.8 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 303 HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKG 357
H F + R S L++ FG ++ K+ PL A ++ +D+ + G
Sbjct: 4 HPFDRERRVRSTLKKVFGFDSFKT-----PLQESATMAVVRGDKDVFVCMPTGAG 53
>FB|FBgn0027375 [details] [associations]
symbol:RecQ5 "homolog of RecQ" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=IDA] [GO:0003924
"GTPase activity" evidence=IDA] [GO:0005525 "GTP binding"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IDA;IMP] [GO:0045930 "negative regulation of
mitotic cell cycle" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IDA] [GO:0045002 "double-strand break repair via
single-strand annealing" evidence=IMP] [GO:0090007 "regulation of
mitotic anaphase" evidence=IDA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005525 GO:GO:0005524
GO:GO:0005634 GO:GO:0003924 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045002 GO:GO:0045930
TIGRFAMs:TIGR00614 GO:GO:0090007 GO:GO:0017116 HSSP:P15043
FlyBase:FBgn0027375 EMBL:AB031086 ProteinModelPortal:Q9U5E0
PRIDE:Q9U5E0 InParanoid:Q9U5E0 ArrayExpress:Q9U5E0 Bgee:Q9U5E0
Uniprot:Q9U5E0
Length = 1058
Score = 365 (133.5 bits), Expect = 3.1e-47, Sum P(3) = 3.1e-47
Identities = 94/247 (38%), Positives = 134/247 (54%)
Query: 158 EVKVNSLLKKHFGHSSLKN-FQKEALS-AWLAHHDCLVLAATGSGKSLCFQIPALLT-GK 214
E V+ LKKHFGHS K+ Q++A+ A D V TGSGKSLCFQ+P L++ +
Sbjct: 4 ESAVHEALKKHFGHSKFKSDLQEKAVKCAVKKKQDVYVSMPTGSGKSLCFQLPGLMSENQ 63
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK-----VEQKALRGMYSIIYVCPE 269
+ +V SPL++L+ DQ L+K V A L S + ++ KA+R +Y+ PE
Sbjct: 64 ITIVFSPLLALIKDQIDHLTKLKVPADSLNSKMSTKERDRVIMDLKAVRTNLKFLYITPE 123
Query: 270 -TVIRLIKPL-QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
+ + L Q L + +A FA+DE HCVS+WGHDFRPDY +L LR +
Sbjct: 124 QAATKFFQDLLQTLHKHNKLAYFAVDEAHCVSQWGHDFRPDYLKLGELRSKYS------- 176
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKK 387
D+ +ALTATA+ +V+EDI K L + + T FR NL + + + S +
Sbjct: 177 --DVIWLALTATASREVKEDIYKQLRLHQPVAQFSTPSFRKNLFYDIVYKN-----SIED 229
Query: 388 DFCQLID 394
DF L D
Sbjct: 230 DFQHLAD 236
Score = 220 (82.5 bits), Expect = 3.1e-47, Sum P(3) = 3.1e-47
Identities = 60/177 (33%), Positives = 93/177 (52%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G I+Y TR + +A + G+ A AY+A L + V + ++ AT +F
Sbjct: 257 GCGIVYCRTRDQVERMAIGVTKQGIGAVAYHAGLKTGERTEVQEAWMRGDQPIICATNSF 316
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPS-- 627
GMG+DK +VR +IH+ PQ++ AYYQE+GRAGRDG + C LY ++ S+ LL +
Sbjct: 317 GMGVDKPSVRFVIHWDVPQNVAAYYQESGRAGRDGLQSYCRLYYGREDVRSIRFLLQNDA 376
Query: 628 ---RRSEDQ---TKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVC 678
R D+ T++A + + T+C R K+ ++FG+ Q CDVC
Sbjct: 377 HRARGRGDKELLTERAIKQFEKITEFCERTTC-RHKLFSDFFGDPTPDCSGQ-CDVC 431
Score = 39 (18.8 bits), Expect = 3.1e-47, Sum P(3) = 3.1e-47
Identities = 18/94 (19%), Positives = 41/94 (43%)
Query: 682 PPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSK--IRE 739
P E +++K +++ + + ++ +S + + ++ + LK K I++
Sbjct: 793 PKEKESIKTKSS-MQHLFGSFKSESEESNQSLNCFKTARQMLEENNAKLKGVPEKLPIKD 851
Query: 740 QSQKYLAT--DLLWWRGLARIMENKGYIREGDDR 771
+ L D + + AR M + REGDD+
Sbjct: 852 GEKGVLENRADSIGFTS-AREMLERSKQREGDDK 884
>RGD|1310823 [details] [associations]
symbol:Recql5 "RecQ protein-like 5" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IEA;ISO] [GO:0031965 "nuclear membrane"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 RGD:1310823
GO:GO:0005524 GO:GO:0005730 GO:GO:0031965 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 EMBL:CH473948
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 OrthoDB:EOG46WZ7X InterPro:IPR010716
Pfam:PF06959 ProDom:PD120154 OMA:DPKIEEF IPI:IPI00364336
RefSeq:NP_001099323.1 UniGene:Rn.198916 Ensembl:ENSRNOT00000007246
GeneID:287834 KEGG:rno:287834 NextBio:627111 Uniprot:D4ACP5
Length = 973
Score = 331 (121.6 bits), Expect = 1.7e-46, Sum P(2) = 1.7e-46
Identities = 90/247 (36%), Positives = 124/247 (50%)
Query: 156 DWEVKVNSLLKKHFGHSSLKN-FQKEALSAWL-AHHDCLVLAATGSGKSLCFQIPALLTG 213
D E +V S LKK FG S K Q+ A+ A + D V TG+GKSLC+Q+PA+L
Sbjct: 11 DRERRVRSTLKKVFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPAVLAK 70
Query: 214 KVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL-------RGMYSIIYV 266
+ +V+SPLI+L+ DQ L V L S + E+K L + ++Y+
Sbjct: 71 GITIVVSPLIALIQDQVDHLLALKVQVSSLNSKL--SVQERKELLSDLERDKPRTKLLYI 128
Query: 267 CPETVIRL-IKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324
PE +P L L ++ +DE HCVS+WGHDFRPDY RL LR
Sbjct: 129 TPEMAASASFQPTLNSLLSRNLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLA---- 184
Query: 325 KSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA- 383
P +ALTATAT QV+ED+ +LH+ + T FR NL + V+ +
Sbjct: 185 -----HAPCVALTATATPQVQEDVFAALHLKQPVASFKTPCFRANLFYDVQFKELIPDVY 239
Query: 384 SYKKDFC 390
+DFC
Sbjct: 240 GNLRDFC 246
Score = 242 (90.2 bits), Expect = 1.7e-46, Sum P(2) = 1.7e-46
Identities = 62/177 (35%), Positives = 90/177 (50%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G I+Y TR+ +A L GV A AY+A L S+ +V E+ E K+ V+VATI+F
Sbjct: 261 GCGIVYCRTREACEQLAIELSSRGVNAKAYHAGLKASERTQVQNEWMEEKVPVIVATISF 320
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL-------- 624
GMG+DK NVR + H+ +S+ YYQE+GRAGRDG + C LY + + +
Sbjct: 321 GMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEL 380
Query: 625 --LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL-CDVC 678
L +R + +A + D CR + +YFG+ + C CD C
Sbjct: 381 AKLQEKRGNKPSDKATLLAFDALVTFCEEVGCRHAAIAKYFGD--APPACAKGCDCC 435
Score = 42 (19.8 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 22/96 (22%), Positives = 42/96 (43%)
Query: 626 PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEM 685
P + E Q K+A + L R N+S + E + E CQL P +
Sbjct: 846 PRPQQESQEKRAQKRL----RPSTNSSALASDPSTE---NRVAREPCQL------SAPGI 892
Query: 686 KNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKK 721
+LKE A+I+++ + + ++ + D ++ G +
Sbjct: 893 -SLKEAADIVVRYLTPFYKEGRFISKD--LFKGFAR 925
>UNIPROTKB|Q8EEK1 [details] [associations]
symbol:SO_2380 "ATP-dependent DNA helicase RecQ family"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
OMA:GHNFRPD ProtClustDB:CLSK906704 RefSeq:NP_717970.1
ProteinModelPortal:Q8EEK1 GeneID:1170099 KEGG:son:SO_2380
PATRIC:23524381 Uniprot:Q8EEK1
Length = 654
Score = 281 (104.0 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 77/237 (32%), Positives = 123/237 (51%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S L++ FG S + Q E ++ LA L + TGSGKSLC+Q AL + +V+SPL
Sbjct: 16 SRLQQQFGFSEFRPGQGEVITQLLAGQSSLAIFPTGSGKSLCYQFTALQLPHLTLVVSPL 75
Query: 223 ISLMHDQCSKLSKHGVTACFLGSG-QPDN--KVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
++L+ DQ + L + G+ A + S P+ +V ++A G ++ V E + +
Sbjct: 76 LALIKDQLNFLQQKGIKAASIDSTLTPEQTQQVMREARSGQLKLLMVSVERFKN--ERFR 133
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL-SVLRENFGANNLKSLKFDIPL-MALT 337
+ +S +++ +DE HC+S+WGH+FRPDY +L RE IPL + LT
Sbjct: 134 QFIQSIPLSMLVVDEAHCISEWGHNFRPDYLKLPDYCRE-----------LSIPLVLLLT 182
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLID 394
ATAT +V++D+ + K V T F+R NL +V + ++ K Q D
Sbjct: 183 ATATRKVKQDMAIRFDI-KPQHIVQTGFYRSNLDLTVLPVASENKLRILKQQLQSFD 238
Score = 271 (100.5 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 55/125 (44%), Positives = 79/125 (63%)
Query: 502 RLSMLQEPLE--DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
+L +L++ L+ DG I+YV + +A LC G A AY+A + +++ +F
Sbjct: 226 KLRILKQQLQSFDGAGIVYVTLQHTAEEVASQLCSMGFVAQAYHAGFDDDKRQQIQHDFM 285
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
+ ++VVATIAFGMGIDK N+R +IHY P+S+E Y QE GRAGRDG L+ CV ANL
Sbjct: 286 LGQTQIVVATIAFGMGIDKSNIRFVIHYDLPKSIENYCQEIGRAGRDGQLSHCVTLANLD 345
Query: 620 SMPTL 624
+ T+
Sbjct: 346 GINTV 350
Score = 53 (23.7 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 620 SMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCD 676
S PTL L ++ + K+ R ++ R+ T+C L YF ++ + + C C
Sbjct: 508 STPTLAKDLYHYFADKEAKEVAR-IAQLVRFFELTTCLNYN-LARYFDDNAAPKSCGHCS 565
Query: 677 VC 678
VC
Sbjct: 566 VC 567
>TIGR_CMR|SO_2380 [details] [associations]
symbol:SO_2380 "RecQ domain protein" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0006310 "DNA recombination" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
HSSP:P15043 HOGENOM:HOG000044388 KO:K03654 OMA:GHNFRPD
ProtClustDB:CLSK906704 RefSeq:NP_717970.1 ProteinModelPortal:Q8EEK1
GeneID:1170099 KEGG:son:SO_2380 PATRIC:23524381 Uniprot:Q8EEK1
Length = 654
Score = 281 (104.0 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 77/237 (32%), Positives = 123/237 (51%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S L++ FG S + Q E ++ LA L + TGSGKSLC+Q AL + +V+SPL
Sbjct: 16 SRLQQQFGFSEFRPGQGEVITQLLAGQSSLAIFPTGSGKSLCYQFTALQLPHLTLVVSPL 75
Query: 223 ISLMHDQCSKLSKHGVTACFLGSG-QPDN--KVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
++L+ DQ + L + G+ A + S P+ +V ++A G ++ V E + +
Sbjct: 76 LALIKDQLNFLQQKGIKAASIDSTLTPEQTQQVMREARSGQLKLLMVSVERFKN--ERFR 133
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL-SVLRENFGANNLKSLKFDIPL-MALT 337
+ +S +++ +DE HC+S+WGH+FRPDY +L RE IPL + LT
Sbjct: 134 QFIQSIPLSMLVVDEAHCISEWGHNFRPDYLKLPDYCRE-----------LSIPLVLLLT 182
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLID 394
ATAT +V++D+ + K V T F+R NL +V + ++ K Q D
Sbjct: 183 ATATRKVKQDMAIRFDI-KPQHIVQTGFYRSNLDLTVLPVASENKLRILKQQLQSFD 238
Score = 271 (100.5 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 55/125 (44%), Positives = 79/125 (63%)
Query: 502 RLSMLQEPLE--DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
+L +L++ L+ DG I+YV + +A LC G A AY+A + +++ +F
Sbjct: 226 KLRILKQQLQSFDGAGIVYVTLQHTAEEVASQLCSMGFVAQAYHAGFDDDKRQQIQHDFM 285
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
+ ++VVATIAFGMGIDK N+R +IHY P+S+E Y QE GRAGRDG L+ CV ANL
Sbjct: 286 LGQTQIVVATIAFGMGIDKSNIRFVIHYDLPKSIENYCQEIGRAGRDGQLSHCVTLANLD 345
Query: 620 SMPTL 624
+ T+
Sbjct: 346 GINTV 350
Score = 53 (23.7 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 620 SMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCD 676
S PTL L ++ + K+ R ++ R+ T+C L YF ++ + + C C
Sbjct: 508 STPTLAKDLYHYFADKEAKEVAR-IAQLVRFFELTTCLNYN-LARYFDDNAAPKSCGHCS 565
Query: 677 VC 678
VC
Sbjct: 566 VC 567
>UNIPROTKB|F1NWK5 [details] [associations]
symbol:F1NWK5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
OMA:DPKIEEF EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00812208
Ensembl:ENSGALT00000003814 ArrayExpress:F1NWK5 Uniprot:F1NWK5
Length = 1023
Score = 329 (120.9 bits), Expect = 1.4e-45, Sum P(2) = 1.4e-45
Identities = 89/242 (36%), Positives = 125/242 (51%)
Query: 160 KVNSLLKKHFGHSSLK-NFQKEALSAWL-AHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
+V L K FG S K + Q+ A A + D V TG+GKSLC+Q+PA+L + +
Sbjct: 20 RVRKTLGKVFGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITI 79
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKV--EQKALRGMYSIIYVCPE-TV 271
VISPLI+L+ DQ L + AC L S Q + + + + ++Y+ PE
Sbjct: 80 VISPLIALIQDQVDHLLALKIKACSLNSKLSAQEKKTILADLASEKPQIKLLYITPEMAA 139
Query: 272 IRLIKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
+P L L ++ IDE HCVS+WGHDFRPDY RL LR +
Sbjct: 140 ASSFQPTLNSLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRIP---------N 190
Query: 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK--TSSRASYKKD 388
P +ALTATAT QV++DI+ +L + + T FR NL + V+ + T A+ K D
Sbjct: 191 TPCVALTATATKQVQDDIVTALKLKQPLATFKTPCFRSNLFYDVQFKELLTDPYANLK-D 249
Query: 389 FC 390
FC
Sbjct: 250 FC 251
Score = 236 (88.1 bits), Expect = 1.4e-45, Sum P(2) = 1.4e-45
Identities = 69/190 (36%), Positives = 96/190 (50%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G I+Y R +A L GVKA AY+A L + V E+ E K+ V+VATI+F
Sbjct: 266 GCGIVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVATISF 325
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS---MPTLLPSRR 629
GMG+DK NVR + H+ +S+ YYQE+GRAGRDG + C LY + + + L+
Sbjct: 326 GMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIKKEL 385
Query: 630 SEDQTKQAYRMLSD---CFRYGMNTS-C----CRAKILVEYFGEDFSH-EKCQLCDVCVD 680
S+ Q K+ SD + S C CR + +YFG+ KC CD C +
Sbjct: 386 SKIQEKKGTLKESDKSVMTAFDAIVSFCEELGCRHAAIAKYFGDVTPPCNKC--CDYCKN 443
Query: 681 GPPEMKNLKE 690
P +K E
Sbjct: 444 -PEAVKRQLE 452
Score = 42 (19.8 bits), Expect = 3.1e-25, Sum P(2) = 3.1e-25
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 755 LARIMENKGYIREGDDRV 772
L++I E KG ++E D V
Sbjct: 385 LSKIQEKKGTLKESDKSV 402
>TIGR_CMR|BA_1505 [details] [associations]
symbol:BA_1505 "ATP-dependent DNA helicase RecQ"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
OMA:DALIIMP RefSeq:NP_843957.1 RefSeq:YP_018128.2
RefSeq:YP_027663.1 ProteinModelPortal:Q81SY8 DNASU:1087356
EnsemblBacteria:EBBACT00000009666 EnsemblBacteria:EBBACT00000015103
EnsemblBacteria:EBBACT00000023330 GeneID:1087356 GeneID:2817068
GeneID:2848363 KEGG:ban:BA_1505 KEGG:bar:GBAA_1505 KEGG:bat:BAS1394
ProtClustDB:CLSK916267 BioCyc:BANT260799:GJAJ-1468-MONOMER
BioCyc:BANT261594:GJ7F-1530-MONOMER Uniprot:Q81SY8
Length = 509
Score = 333 (122.3 bits), Expect = 3.7e-45, Sum P(3) = 3.7e-45
Identities = 85/226 (37%), Positives = 127/226 (56%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
+K+ L K FG+S + QK ++ L D + + TG GKS+C+Q P L+ V+V
Sbjct: 1 MKLEEYLYKWFGYSEFRPGQKGVITDLLEGKDVIAMLPTGRGKSMCYQFPGLMREGTVLV 60
Query: 219 ISPLISLMHDQCSKLS---KHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIR-- 273
+SPL+SLM DQ ++L K V A F + K E Y I+V PE +
Sbjct: 61 VSPLLSLMEDQVTQLKYVVKDRVIA-FNSFRTLNEKREAMKKLSSYKFIFVSPEMLQSEL 119
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
LI+ L+++ I+LF +DE HC+S+WG+DFRPDY++L+V+ EN G+ +
Sbjct: 120 LIRELKKIH----ISLFVVDEAHCISQWGYDFRPDYKKLNVVIENIGSPTV--------- 166
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT 379
+ALTATAT V +DI SL++ KG + S RPN+ V+ +T
Sbjct: 167 LALTATATKGVLQDIADSLNL-KGAAEHVYSIDRPNIAMDVQFVET 211
Score = 200 (75.5 bits), Expect = 3.7e-45, Sum P(3) = 3.7e-45
Identities = 45/122 (36%), Positives = 69/122 (56%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAA-YNASLPKSQLRRVHTEFHENKLEVVVATIA 571
G I+Y +R T + +YL G GV A Y+ + + + +F N+L++V+ T A
Sbjct: 228 GPGIVYCSSRAWTERLTEYLRGKGVTGVAFYHGGMEHEERMLIQQQFMNNQLQLVICTSA 287
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSE 631
FGMG++K N R IIH+ +P ++ +Y QE GRAGRDG + +L S + LP E
Sbjct: 288 FGMGVNKANTRYIIHFHYPTNIASYLQEIGRAGRDGEPSIAILLC--SPLDHDLPISIIE 345
Query: 632 DQ 633
D+
Sbjct: 346 DE 347
Score = 45 (20.9 bits), Expect = 3.7e-45, Sum P(3) = 3.7e-45
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 654 CRAKILVEYFGEDFSHEKCQLCDVC 678
CR + +++ FG E CD C
Sbjct: 449 CRREYVLQQFGYRKEQELMNCCDYC 473
Score = 41 (19.5 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 725 MDRPNLKM---FVSKIREQSQKYL 745
+DRPN+ M FV I E+ + L
Sbjct: 197 IDRPNIAMDVQFVETIEEKKEALL 220
>UNIPROTKB|Q47WD5 [details] [associations]
symbol:CPS_4237 "RecQ domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
Uniprot:Q47WD5
Length = 690
Score = 274 (101.5 bits), Expect = 2.0e-42, Sum P(2) = 2.0e-42
Identities = 73/214 (34%), Positives = 116/214 (54%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
SLL+ FG + Q++ ++ L L + TGSGKSLC+Q+ AL + +V+SPL
Sbjct: 16 SLLET-FGFDGFRPGQEQTITQLLKGQSSLSIFPTGSGKSLCYQLTALHLPHLTLVVSPL 74
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS-IIYVCPETVIRLIKP-LQR 280
++LM DQ S L+ G+ A + S N+ Q + G+ I V +V R ++
Sbjct: 75 LALMKDQLSFLASKGIKAASIDSTLKGNEA-QTVMAGVRDGDIKVLMVSVERFKNERFRQ 133
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
ES +++ +DE HC+S+WGH+FRPDY +L + ++L + L+ LTATA
Sbjct: 134 FIESVPVSMLVVDEAHCISEWGHNFRPDYLKLP--------SYCQALNISLVLL-LTATA 184
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
T +V++D+ + + V T F+R NL SV
Sbjct: 185 TRKVKQDMAAKFAI-RDEHIVQTGFYRSNLDLSV 217
Score = 258 (95.9 bits), Expect = 2.0e-42, Sum P(2) = 2.0e-42
Identities = 54/128 (42%), Positives = 77/128 (60%)
Query: 497 NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHT 556
NK E++ Q+ G I+YV + ++A+YL G+ A AY+A ++
Sbjct: 226 NKQLEQIISAQQ----GAGIVYVTLQHSAETVAQYLKQQGINACAYHAGFDSDTRSQIQQ 281
Query: 557 EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616
+F K++V+VATIAFGMGIDK N+R +IHY P+S+E Y QE GRAGRDG + C A
Sbjct: 282 DFMAGKIQVIVATIAFGMGIDKSNIRFVIHYDLPKSIENYSQEIGRAGRDGLPSQCFTLA 341
Query: 617 NLSSMPTL 624
NL + T+
Sbjct: 342 NLDGLNTV 349
>TIGR_CMR|CPS_4237 [details] [associations]
symbol:CPS_4237 "RecQ domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0004386 "helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
Uniprot:Q47WD5
Length = 690
Score = 274 (101.5 bits), Expect = 2.0e-42, Sum P(2) = 2.0e-42
Identities = 73/214 (34%), Positives = 116/214 (54%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
SLL+ FG + Q++ ++ L L + TGSGKSLC+Q+ AL + +V+SPL
Sbjct: 16 SLLET-FGFDGFRPGQEQTITQLLKGQSSLSIFPTGSGKSLCYQLTALHLPHLTLVVSPL 74
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS-IIYVCPETVIRLIKP-LQR 280
++LM DQ S L+ G+ A + S N+ Q + G+ I V +V R ++
Sbjct: 75 LALMKDQLSFLASKGIKAASIDSTLKGNEA-QTVMAGVRDGDIKVLMVSVERFKNERFRQ 133
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
ES +++ +DE HC+S+WGH+FRPDY +L + ++L + L+ LTATA
Sbjct: 134 FIESVPVSMLVVDEAHCISEWGHNFRPDYLKLP--------SYCQALNISLVLL-LTATA 184
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
T +V++D+ + + V T F+R NL SV
Sbjct: 185 TRKVKQDMAAKFAI-RDEHIVQTGFYRSNLDLSV 217
Score = 258 (95.9 bits), Expect = 2.0e-42, Sum P(2) = 2.0e-42
Identities = 54/128 (42%), Positives = 77/128 (60%)
Query: 497 NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHT 556
NK E++ Q+ G I+YV + ++A+YL G+ A AY+A ++
Sbjct: 226 NKQLEQIISAQQ----GAGIVYVTLQHSAETVAQYLKQQGINACAYHAGFDSDTRSQIQQ 281
Query: 557 EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616
+F K++V+VATIAFGMGIDK N+R +IHY P+S+E Y QE GRAGRDG + C A
Sbjct: 282 DFMAGKIQVIVATIAFGMGIDKSNIRFVIHYDLPKSIENYSQEIGRAGRDGLPSQCFTLA 341
Query: 617 NLSSMPTL 624
NL + T+
Sbjct: 342 NLDGLNTV 349
>TAIR|locus:2029799 [details] [associations]
symbol:AT1G27880 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0042631 "cellular response
to water deprivation" evidence=IEP] [GO:0006260 "DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 EMBL:AC079280 GO:GO:0006310
GO:GO:0042631 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043
HOGENOM:HOG000264957 KO:K10730 EMBL:AJ421618 EMBL:AK226619
IPI:IPI00519923 RefSeq:NP_174109.2 UniGene:At.40984
ProteinModelPortal:Q0WVW7 SMR:Q0WVW7 PaxDb:Q0WVW7 PRIDE:Q0WVW7
EnsemblPlants:AT1G27880.1 GeneID:839681 KEGG:ath:AT1G27880
KEGG:dosa:Os04t0486800-01 TAIR:At1g27880 InParanoid:Q0WVW7
OMA:THFWGRY PhylomeDB:Q0WVW7 ProtClustDB:CLSN2680265
Genevestigator:Q0WVW7 Uniprot:Q0WVW7
Length = 911
Score = 298 (110.0 bits), Expect = 3.3e-42, Sum P(2) = 3.3e-42
Identities = 79/238 (33%), Positives = 127/238 (53%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ LL +G+ S ++ Q +A+ L +++ TG+GKSLC+QIPA++ + +V+S
Sbjct: 257 LTKLLNLVYGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITLVVS 316
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQ-PDNKVE--QKALRGMYSIIYVCPETVIRLIKP 277
PL+SLM DQ L + L S Q P+ E +K G+ +++V PE ++ ++
Sbjct: 317 PLVSLMIDQLKHLPSI-IKGGLLSSSQRPEEATETLRKLKEGIIKVLFVSPERLLN-VEF 374
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS-LKFDIPLMAL 336
L S ++L +DE HCVS+W H+FRP Y RL A+ L S LK + ++A+
Sbjct: 375 LSMFRMSLSVSLVVVDEAHCVSEWSHNFRPSYMRLK-------ASMLFSELKAEC-ILAM 426
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLID 394
TATAT + ++ SL + T + S R N SV + S A+ KD L++
Sbjct: 427 TATATTMTLQAVMSSLEIPS-TNLIQKSQLRDNFELSV----SLSGANRMKDLLILME 479
Score = 235 (87.8 bits), Expect = 3.3e-42, Sum P(2) = 3.3e-42
Identities = 51/121 (42%), Positives = 72/121 (59%)
Query: 497 NKPAERLSMLQEP--LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV 554
N+ + L +++ P E I+Y + ET I+KYL + A Y++ LP R+
Sbjct: 469 NRMKDLLILMESPPYKEIRSIIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRI 528
Query: 555 HTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL 614
F NK+ VVVAT+AFGMG+DK +V +IH+ P S+E Y QE GRAGRDG L+ C L
Sbjct: 529 QESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHL 588
Query: 615 Y 615
+
Sbjct: 589 F 589
>WB|WBGene00004322 [details] [associations]
symbol:rcq-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008340 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006974 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
EMBL:Z38112 HSSP:P15043 KO:K10902 PIR:T20430 RefSeq:NP_497810.1
ProteinModelPortal:Q19046 SMR:Q19046 PaxDb:Q19046
EnsemblMetazoa:E03A3.2 GeneID:175522 KEGG:cel:CELE_E03A3.2
UCSC:E03A3.2 CTD:175522 WormBase:E03A3.2 HOGENOM:HOG000021815
InParanoid:Q19046 OMA:AWAEIFN NextBio:888512 Uniprot:Q19046
Length = 809
Score = 269 (99.8 bits), Expect = 1.7e-40, Sum P(3) = 1.7e-40
Identities = 79/242 (32%), Positives = 121/242 (50%)
Query: 140 SDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKN-FQKEALSAWLAHH-DCLVLAAT 197
++ LA+ + + G D + + + + F H ++ Q +A++ L D V T
Sbjct: 144 ANPLAIGTGERLIRGQDIIERRDKVFLELFCHKKYRSRLQMQAINCILKRKCDVYVSLPT 203
Query: 198 GSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL 257
G+GKSLC+Q+PA++ G + VVISPLI+LM DQ S L + G+ L S VE+ +
Sbjct: 204 GAGKSLCYQLPAVVHGGITVVISPLIALMKDQISSLKRKGIPCETLNSTL--TTVERSRI 261
Query: 258 RGMYS-------IIYVCPETVIR--LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPD 308
G + ++Y+ E V K L LA + +DE HCV++WGHDFRPD
Sbjct: 262 MGELAKEKPTIRMLYLTAEGVATDGTKKLLNGLANRDVLRYIVVDEAHCVTQWGHDFRPD 321
Query: 309 YRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP 368
Y L LR+ +P +ALTATA + ++DI L + F + +R
Sbjct: 322 YLTLGSLRDVCPG---------VPWVALTATANAKAQDDIAFQLKLRNPESFK-SGTYRD 371
Query: 369 NL 370
NL
Sbjct: 372 NL 373
Score = 234 (87.4 bits), Expect = 1.7e-40, Sum P(3) = 1.7e-40
Identities = 49/103 (47%), Positives = 65/103 (63%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G I+Y +R E +AK L G+ A AY+A L K V ++ N++ VV AT+AF
Sbjct: 415 GSAIVYCRSRNECGQVAKMLEIAGIPAMAYHAGLGKKDRNEVQEKWMNNEIPVVAATVAF 474
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
GMGIDK +VR +IH+ Q+L YYQEAGRAGRDG + C +Y
Sbjct: 475 GMGIDKPDVRAVIHWSPSQNLAGYYQEAGRAGRDGKRSYCRIY 517
Score = 59 (25.8 bits), Expect = 1.7e-40, Sum P(3) = 1.7e-40
Identities = 22/96 (22%), Positives = 40/96 (41%)
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL-CDVCVDGPPEMKN 687
++E Q K L+ Y ++ CR + +F +D C+ CD C D ++N
Sbjct: 550 KAEMQIKSIQTGLAKMLEY-CESARCRHVSIASFF-DDTECRPCKTNCDYCRDPTKTIRN 607
Query: 688 LKEEANILMQVIAAYNEQSNSMDDD--DGIYSGIKK 721
++ N + +S S + D +Y G K+
Sbjct: 608 VEAFINSEASTGRSMFRKSASSGESGFDSVYGGGKR 643
>ASPGD|ASPL0000072255 [details] [associations]
symbol:recQ species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
HOGENOM:HOG000044388 ProteinModelPortal:C8V8Q7
EnsemblFungi:CADANIAT00006022 OMA:ARPNIHY Uniprot:C8V8Q7
Length = 541
Score = 312 (114.9 bits), Expect = 1.4e-39, Sum P(4) = 1.4e-39
Identities = 77/206 (37%), Positives = 114/206 (55%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHG 237
Q++ ++A + HD + A+T GKSLC+Q+PA+ T V VV+ PL+SLM DQ + L G
Sbjct: 10 QRDVIAAAVEGHDVFLQASTSFGKSLCYQLPAMTTHGVTVVVCPLLSLMTDQVNALQALG 69
Query: 238 VTACFLGS--GQPDNKVE-QKALRG--MYSIIYVCPETVIR--LIKPLQRLAESRGIALF 290
V + S + +V + L G ++YV PE + LQ + + R +
Sbjct: 70 VPVATINSTVSLAERRVILEDLLSGHPRIRLLYVTPELCQNNTFRRNLQTMHKQRELVRI 129
Query: 291 AIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILK 350
AIDE HC+S+WGHDFRP Y+ LS R + N +P+ ALTATAT QVR DI+
Sbjct: 130 AIDEAHCISEWGHDFRPAYKALSWFRHSL-TNP------PVPISALTATATSQVRTDIIN 182
Query: 351 SLHMS-KGTKFVLTSFFRPNLRFSVK 375
L ++ + K T RPN+ + ++
Sbjct: 183 ILGLNPRRLKIFSTPSARPNIHYEIR 208
Score = 170 (64.9 bits), Expect = 1.4e-39, Sum P(4) = 1.4e-39
Identities = 45/132 (34%), Positives = 68/132 (51%)
Query: 516 IIYVPTRKETLSIAKYLCGFG--VKAAAYNASLPKSQLRRVHTEFHENKLE--------- 564
I+YV TR +A LC ++A AY+A L + RV E+ + +
Sbjct: 257 IVYVSTRVAAERLAHVLCQSDNRIRAVAYHAGLVAADRVRVQNEWIAPQKQPQQRGPGAK 316
Query: 565 -----VVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
++VAT AFGMGID VR ++H+ P++ E + QE+GRAGRDG A ++Y +L
Sbjct: 317 PVTFYIIVATTAFGMGIDNPEVRFVVHWSPPRTFEGFVQESGRAGRDGRAAASIVYYSLQ 376
Query: 620 SMPTLLPSRRSE 631
+L R +
Sbjct: 377 ERERVLNHLRRD 388
Score = 47 (21.6 bits), Expect = 1.4e-39, Sum P(4) = 1.4e-39
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 646 RYGMNTSCCRAKILVEYFGE 665
RY T+ CR +++ E+FG+
Sbjct: 426 RYCETTTRCRHELIKEFFGD 445
Score = 41 (19.5 bits), Expect = 1.4e-39, Sum P(4) = 1.4e-39
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 675 CDVCVDGPPEM 685
CD C +GP E+
Sbjct: 487 CDFCKEGPGEL 497
>FB|FBgn0040290 [details] [associations]
symbol:RecQ4 "RecQ4" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS;IDA] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS;IMP]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0045740 "positive
regulation of DNA replication" evidence=IMP] [GO:0010971 "positive
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006284 "base-excision repair" evidence=IMP] [GO:0051301 "cell
division" evidence=IMP] [GO:0002164 "larval development"
evidence=IMP] [GO:0007307 "eggshell chorion gene amplification"
evidence=IMP] [GO:0036292 "DNA rewinding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI;IMP]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0007095 EMBL:AE014296 GO:GO:0051301 GO:GO:0010971
GO:GO:0006284 GO:GO:0008284 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 GO:GO:0003697 GO:GO:0006302 GO:GO:0045740
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0007307
GO:GO:0002164 HSSP:P15043 KO:K10730 InterPro:IPR021110 Pfam:PF11719
GO:GO:0036292 FlyBase:FBgn0040290 RefSeq:NP_652607.1
UniGene:Dm.1556 ProteinModelPortal:Q9VSE6 SMR:Q9VSE6 IntAct:Q9VSE6
PRIDE:Q9VSE6 EnsemblMetazoa:FBtr0076729 GeneID:53438
KEGG:dme:Dmel_CG7487 UCSC:CG7487-RA CTD:53438 InParanoid:Q9VSE6
OMA:GMPASRR PhylomeDB:Q9VSE6 GenomeRNAi:53438 NextBio:841159
ArrayExpress:Q9VSE6 Bgee:Q9VSE6 Uniprot:Q9VSE6
Length = 1579
Score = 300 (110.7 bits), Expect = 9.3e-38, Sum P(3) = 9.3e-38
Identities = 89/246 (36%), Positives = 125/246 (50%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLIS 224
FGH++ + Q A+ L+ LV +TGSGKSLC+Q+PA L G + +VISPL+S
Sbjct: 866 FGHTNFRKGQDRAIMRTLSGLSSLVTLSTGSGKSLCYQLPAYLYSRKVGAITLVISPLVS 925
Query: 225 LMHDQCSKLSKHGVTACFLGSGQ--PDN-KVEQKALRGMYSIIYVCPETVI---RLIKPL 278
LM DQ + + H + A L + Q P K++Q G I+ V PE V+ R
Sbjct: 926 LMEDQVTGVP-HFLRAHCLHTNQTAPQRMKIQQMIANGEIDILLVSPEAVVAGERATGFG 984
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL-SVLRENFGANNLKSLKFDIPLMALT 337
L + IA IDE HCVS+W H+FRP Y + VLR+N G + + LT
Sbjct: 985 AILRQLPPIAFACIDEAHCVSQWSHNFRPSYLMICKVLRKNLGVRTV---------LGLT 1035
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRP-NLRFSVKHSKTSSRA------SYKKDFC 390
ATAT+ R I+ L +S G + +++ P NL SV + A S + + C
Sbjct: 1036 ATATLPTRVSIINHLGISDGERGIISDIPLPDNLVLSVSKDENRDAALLQLLNSERFEPC 1095
Query: 391 QLIDIY 396
Q I IY
Sbjct: 1096 QSIIIY 1101
Score = 209 (78.6 bits), Expect = 9.3e-38, Sum P(3) = 9.3e-38
Identities = 40/78 (51%), Positives = 55/78 (70%)
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
+A Y+A +P S+ R V F N+L +VVATIAFGMGI+K ++R +IHY P++ E+Y
Sbjct: 1139 QAEPYHAGMPASRRRTVQKAFMSNELRIVVATIAFGMGINKPDIRAVIHYNMPRNFESYV 1198
Query: 598 QEAGRAGRDGHLADCVLY 615
QE GRAGRDG + C L+
Sbjct: 1199 QEIGRAGRDGLPSHCHLF 1216
Score = 37 (18.1 bits), Expect = 9.3e-38, Sum P(3) = 9.3e-38
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 132 MDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEA 181
MD + +A ++ S + V + K S +K + GH + F K+A
Sbjct: 779 MDVDFEALDAAVEASLSQPVS-----QEKAASPIKTYVGHKIPEEFLKQA 823
>UNIPROTKB|Q6P4G0 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
EMBL:CH471099 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AC087749 HOGENOM:HOG000044388
IPI:IPI01015246 UniGene:Hs.632229 HGNC:HGNC:9950 HOVERGEN:HBG057065
ChiTaRS:RECQL5 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
EMBL:BC063440 IPI:IPI00185769 ProteinModelPortal:Q6P4G0
STRING:Q6P4G0 PRIDE:Q6P4G0 Ensembl:ENST00000423245 UCSC:uc010dgk.3
ArrayExpress:Q6P4G0 Bgee:Q6P4G0 Uniprot:Q6P4G0
Length = 964
Score = 253 (94.1 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 68/190 (35%), Positives = 94/190 (49%)
Query: 209 ALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGS--GQPDNK---VEQKALRGMYSI 263
A++ G + +V+SPLI+L+ DQ L V L S + K + + + I
Sbjct: 40 AVVKG-ITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKI 98
Query: 264 IYVCPETVIRL-IKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGA 321
+Y+ PE +P L L ++ +DE HCVS+WGHDFRPDY RL LR G
Sbjct: 99 LYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLG- 157
Query: 322 NNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT-S 380
P +ALTATAT QV+ED+ +LH+ K T FR NL + V+ + S
Sbjct: 158 --------HAPCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELIS 209
Query: 381 SRASYKKDFC 390
KDFC
Sbjct: 210 DPYGNLKDFC 219
Score = 238 (88.8 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 73/234 (31%), Positives = 109/234 (46%)
Query: 503 LSMLQEPLEDGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
L L + + GL+ I+Y TR+ +A L GV A AY+A L S+ V ++
Sbjct: 220 LKALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWM 279
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
E K+ V+VATI+FGMG+DK NVR + H+ +S+ YYQE+GRAGRDG + C LY + +
Sbjct: 280 EEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRN 339
Query: 620 SMPTL----------LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSH 669
+ L +R + +A M D CR + +YFG+
Sbjct: 340 DRDQVSFLIRKEVAKLQEKRGNKASDKATIMAFDALVTFCEELGCRHAAIAKYFGDALP- 398
Query: 670 EKCQL-CDVCVDGPPEMKNLKE-EANILMQVIAAYNEQSNSMDDDDGIYSGIKK 721
C CD C + + L+ E + Q N D + +Y G +K
Sbjct: 399 -ACAKGCDHCQNPTAVRRRLEALERSSSWSKTCIGPSQGNGFDPE--LYEGGRK 449
Score = 49 (22.3 bits), Expect = 4.5e-16, Sum P(2) = 4.5e-16
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
D E +V S LKK FG S K +E SA +A + + + + Q+ LLT KV
Sbjct: 11 DPERRVRSTLKKVFGFDSFKTPLQE--SATMAVVKGITIVVSPLIALIQDQVDHLLTLKV 68
Query: 216 VV 217
V
Sbjct: 69 RV 70
Score = 44 (20.5 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQV 344
F P+ R S L++ FG ++ K+ + MA+ TI V
Sbjct: 10 FDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGITIVV 49
Score = 42 (19.8 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 22/93 (23%), Positives = 43/93 (46%)
Query: 123 EEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKH-------------- 168
+E+KE ++ K ++ L ++ P E+ S ++ +NSL+ +H
Sbjct: 80 QERKELLADLERE-KPQTKILYIT-P-EMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVS 136
Query: 169 -FGHSSLKNFQK-EALSAWLAHHDCLVLAATGS 199
+GH ++ + AL + L H C+ L AT +
Sbjct: 137 QWGHDFRPDYLRLGALRSRLGHAPCVALTATAT 169
>UNIPROTKB|Q4JNX8 [details] [associations]
symbol:RTS "RECQL4-helicase-like protein" species:8355
"Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0006270 "DNA replication
initiation" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0000785
GO:GO:0003682 GO:GO:0003676 GO:GO:0006270 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110
Pfam:PF11719 EMBL:DQ059311 RefSeq:NP_001089101.1 UniGene:Xl.86701
ProteinModelPortal:Q4JNX8 GeneID:733317 KEGG:xla:733317 CTD:733317
Uniprot:Q4JNX8
Length = 1500
Score = 270 (100.1 bits), Expect = 7.5e-36, Sum P(2) = 7.5e-36
Identities = 87/253 (34%), Positives = 125/253 (49%)
Query: 152 EIGSDWEVK-----VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ 206
E+G D VK V L + G+ S ++ Q++A+ L+ L + +TG GKSLC+Q
Sbjct: 701 ELGPDGRVKETPSEVYDNLSE-LGYRSFRSGQEQAVMRILSGFSSLGILSTGMGKSLCYQ 759
Query: 207 IPALLTGK----VVVVISPLISLMHDQCSKLSKHGVTACF---LGSGQPDNKVEQKALRG 259
+PA + K + +VISPL+SLM DQ S LS C + Q + +E K +G
Sbjct: 760 LPAYMYAKRSRCISLVISPLVSLMDDQVSGLSPKLKAVCIHSNMTRTQREAAIE-KVKQG 818
Query: 260 MYSIIYVCPETVI-------RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312
++ + PE ++ + P +L +A IDE HCVS+W H+FRP Y RL
Sbjct: 819 KVHVLLLSPEALVGGGFSGSSCLPPADQLPP---VAFACIDEAHCVSEWSHNFRPCYLRL 875
Query: 313 -SVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMS-KGTKFVLTSFFRPNL 370
VLRE G N L + LTATAT ED+ L +S +G V + PNL
Sbjct: 876 CKVLRERLGVNCL---------LGLTATATRATAEDVAHHLGVSPEGGIPVRMASVPPNL 926
Query: 371 RFSVKHSKTSSRA 383
SV + +A
Sbjct: 927 HLSVSMDRNRDQA 939
Score = 210 (79.0 bits), Expect = 7.5e-36, Sum P(2) = 7.5e-36
Identities = 53/136 (38%), Positives = 74/136 (54%)
Query: 482 RDRDTDR--SFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539
R +T R + RT L S L ++ T V RK+ ++ K A
Sbjct: 961 RREETQRISALLRTSLQGVTVSANSHLNSQEQEDTT---VSDRKKAQALKKIRRPLKWIA 1017
Query: 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599
+Y+A + ++ RRV F +L +VVAT+AFGMG+DK +VR IIHY P++ E+Y QE
Sbjct: 1018 ESYHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDVRGIIHYNMPKNFESYVQE 1077
Query: 600 AGRAGRDGHLADCVLY 615
GRAGRDG A C L+
Sbjct: 1078 IGRAGRDGKDAQCHLF 1093
>UNIPROTKB|Q33DM4 [details] [associations]
symbol:recql4 "RecQ4 protein" species:8355 "Xenopus laevis"
[GO:0000785 "chromatin" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IMP] [GO:0035563 "positive regulation of chromatin
binding" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0006260
GO:GO:0008270 GO:GO:0000785 GO:GO:0003682 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0035563 CTD:9401
HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110 Pfam:PF11719
EMBL:AB213025 RefSeq:NP_001089182.1 UniGene:Xl.51337
ProteinModelPortal:Q33DM4 GeneID:734225 KEGG:xla:734225
Xenbase:XB-GENE-997817 Uniprot:Q33DM4
Length = 1503
Score = 270 (100.1 bits), Expect = 7.6e-36, Sum P(2) = 7.6e-36
Identities = 87/253 (34%), Positives = 125/253 (49%)
Query: 152 EIGSDWEVK-----VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ 206
E+G D VK V L + G+ S ++ Q++A+ L+ LV+ +TG GKSLC+Q
Sbjct: 704 ELGPDGRVKETPSEVYDNLSE-LGYRSFRSGQEQAVMRILSGLSSLVILSTGMGKSLCYQ 762
Query: 207 IPALLTGK----VVVVISPLISLMHDQCSKLSKHGVTACF---LGSGQPDNKVEQKALRG 259
+PA + K + +VISPL+SLM DQ S L C + Q + +E K +G
Sbjct: 763 LPAYMYAKRSRCISLVISPLVSLMDDQVSGLPPKLKAVCIHSNMTRTQREAAIE-KVKQG 821
Query: 260 MYSIIYVCPETVI-------RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312
++ + PE ++ + P +L +A IDE HCVS+W H+FRP Y RL
Sbjct: 822 KVHVLLLSPEALVGGGFSGSSCLPPADQLPP---VAFACIDEAHCVSEWSHNFRPCYLRL 878
Query: 313 -SVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMS-KGTKFVLTSFFRPNL 370
VLRE G N L + LTATAT ED+ L +S +G V + PNL
Sbjct: 879 CKVLRERLGVNCL---------LGLTATATRATAEDVAHHLGVSPEGGIPVRMASVPPNL 929
Query: 371 RFSVKHSKTSSRA 383
SV + +A
Sbjct: 930 HLSVSMDRNRDQA 942
Score = 210 (79.0 bits), Expect = 7.6e-36, Sum P(2) = 7.6e-36
Identities = 53/136 (38%), Positives = 74/136 (54%)
Query: 482 RDRDTDR--SFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539
R +T R + RT L S L ++ T V RK+ ++ K A
Sbjct: 964 RREETQRISALLRTSLQGVTVSANSHLNSQEQEDTT---VSDRKKAQALKKIRRPLKWIA 1020
Query: 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599
+Y+A + ++ RRV F +L +VVAT+AFGMG+DK +VR IIHY P++ E+Y QE
Sbjct: 1021 ESYHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDVRGIIHYNMPKNFESYVQE 1080
Query: 600 AGRAGRDGHLADCVLY 615
GRAGRDG A C L+
Sbjct: 1081 IGRAGRDGKDAQCHLF 1096
>RGD|1307732 [details] [associations]
symbol:Recql4 "RecQ protein-like 4" species:10116 "Rattus
norvegicus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0000733 "DNA strand renaturation" evidence=ISO] [GO:0001501
"skeletal system development" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0005575 "cellular_component" evidence=ND] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA;ISO] [GO:0032508
"DNA duplex unwinding" evidence=ISO] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=ISO] [GO:0043473
"pigmentation" evidence=IEA;ISO] [GO:0045875 "negative regulation
of sister chromatid cohesion" evidence=IEA;ISO] [GO:0048705
"skeletal system morphogenesis" evidence=IEA;ISO]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
RGD:1307732 GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
IPI:IPI00366433 Ensembl:ENSRNOT00000045135 UCSC:RGD:1307732
ArrayExpress:D4A5W5 Uniprot:D4A5W5
Length = 1216
Score = 266 (98.7 bits), Expect = 4.3e-34, Sum P(2) = 4.3e-34
Identities = 82/241 (34%), Positives = 125/241 (51%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
+D +V +L++ GH + + Q+ A+ L+ L++ TG+GKSLC+Q+PALL K
Sbjct: 480 ADTPAEVFQVLEQ-LGHHTFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYAK 538
Query: 215 ----VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ--KALRG-MYSIIYVC 267
+ +V+SPL+SLM DQ S L AC L SG + E K +R ++ V
Sbjct: 539 RSPCLTLVVSPLLSLMDDQVSDLPSCLKAAC-LHSGMTKKQRESVLKKVRAAQVHVLIVS 597
Query: 268 PETVIRL-IK-P--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL-SVLRENFGAN 322
PE ++ K P L A+ +A IDEVHC+S+W H+FRP Y R+ VLRE+ G
Sbjct: 598 PEALVGCGAKGPANLPPAAQLPPVAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVR 657
Query: 323 NLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
+ LTATAT D+ + L +++ + ++ NL SV + S +
Sbjct: 658 CF---------LGLTATATRSTARDVAQHLGIAEELEVSGSASIPANLHLSVSMDRDSDQ 708
Query: 383 A 383
A
Sbjct: 709 A 709
Score = 195 (73.7 bits), Expect = 4.3e-34, Sum P(2) = 4.3e-34
Identities = 57/147 (38%), Positives = 79/147 (53%)
Query: 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYL--C------- 533
DRD+D++ LL +R L D + IIY RK+T +A L C
Sbjct: 703 DRDSDQAL--VTLLQ--GDRFRTL-----DSI-IIYCARRKDTERVAALLRTCLSTVRDS 752
Query: 534 ---GFGVK--AAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYG 588
G G + A AY+A + + +RV F + L +VVAT+AFGMG+D+ +VR ++H G
Sbjct: 753 KPRGRGPETLAEAYHAGMCSQERKRVQQAFMQGHLRMVVATVAFGMGLDRPDVRAVLHLG 812
Query: 589 WPQSLEAYYQEAGRAGRDGHLADCVLY 615
P S E+Y Q GRAGRDG A C L+
Sbjct: 813 LPPSFESYVQAIGRAGRDGKPAHCHLF 839
Score = 39 (18.8 bits), Expect = 8.8e-18, Sum P(2) = 8.8e-18
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHY-GW-PQSLEAYYQEAG 601
LE V +A MG + +VR+ +H W P+ + Q G
Sbjct: 992 LEFDVVELADSMGWELASVRQALHQLKWDPEPKKGAPQGTG 1032
>MGI|MGI:1931028 [details] [associations]
symbol:Recql4 "RecQ protein-like 4" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000733 "DNA
strand renaturation" evidence=ISO] [GO:0001501 "skeletal system
development" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006260
"DNA replication" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
[GO:0043473 "pigmentation" evidence=IMP] [GO:0045875 "negative
regulation of sister chromatid cohesion" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0048705 "skeletal system
morphogenesis" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 MGI:MGI:1931028 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0008284
GO:GO:0006260 GO:GO:0008270 GO:GO:0003676 GO:GO:0006310
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0048705 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043473 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
GO:GO:0045875 CTD:9401 HOGENOM:HOG000264957 HOVERGEN:HBG065925
KO:K10730 InterPro:IPR021110 Pfam:PF11719 EMBL:AB039882
EMBL:AB175741 EMBL:AB042529 IPI:IPI00119366 IPI:IPI00462416
RefSeq:NP_478121.2 UniGene:Mm.18373 ProteinModelPortal:Q75NR7
SMR:Q75NR7 IntAct:Q75NR7 STRING:Q75NR7 PhosphoSite:Q75NR7
PRIDE:Q75NR7 DNASU:79456 Ensembl:ENSMUST00000036852 GeneID:79456
KEGG:mmu:79456 UCSC:uc007wlv.1 OrthoDB:EOG4CJVGG NextBio:349927
Bgee:Q75NR7 CleanEx:MM_RECQL4 Genevestigator:Q75NR7
GermOnline:ENSMUSG00000033762 Uniprot:Q75NR7
Length = 1216
Score = 256 (95.2 bits), Expect = 8.6e-34, Sum P(4) = 8.6e-34
Identities = 80/231 (34%), Positives = 118/231 (51%)
Query: 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVISPL 222
+ G+ + + Q+ A+ L+ L++ TG+GKSLC+Q+PALL + + +V+SPL
Sbjct: 491 ERLGYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSPL 550
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ--KALRG-MYSIIYVCPETVI----RLI 275
+SLM DQ S L AC L SG + E K +R ++ V PE ++ R
Sbjct: 551 LSLMDDQVSDLPSCLKAAC-LHSGMTKKQRESVLKKVRAAQVHVLIVSPEALVGCGARGP 609
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL-SVLRENFGANNLKSLKFDIPLM 334
L + A+ IA IDEVHC+S+W H+FRP Y R+ VLRE+ G +
Sbjct: 610 GSLPQAAQLPPIAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCF---------L 660
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFR-P-NLRFSVKHSKTSSRA 383
LTATAT D+ + H+ +F L+ P NL SV + S +A
Sbjct: 661 GLTATATRSTARDVAQ--HLGIAGEFELSGSANIPANLHLSVSMDRDSDQA 709
Score = 200 (75.5 bits), Expect = 8.6e-34, Sum P(4) = 8.6e-34
Identities = 40/83 (48%), Positives = 52/83 (62%)
Query: 533 CGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQS 592
CG A AY+A + + RRV F L +VVAT+AFGMG+D+ +VR ++H G P S
Sbjct: 757 CGPEAIAEAYHAGMSSQERRRVQQAFMRGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPS 816
Query: 593 LEAYYQEAGRAGRDGHLADCVLY 615
E+Y Q GRAGRDG A C L+
Sbjct: 817 FESYVQAIGRAGRDGKPAHCHLF 839
Score = 56 (24.8 bits), Expect = 8.6e-34, Sum P(4) = 8.6e-34
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 60 SKCVTENGKTLGKRTL-SSANSLGQMRQASLLDHFQSGNRQKR 101
S+ T+N +++ K++L SS G+ +A+L + Q+G Q R
Sbjct: 84 SRAATQNTQSMPKQSLLSSVQDYGKRLKANLKNTTQTGPTQSR 126
Score = 42 (19.8 bits), Expect = 2.4e-32, Sum P(4) = 2.4e-32
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 22 DSDITEAVETVGP-SFNDAIEYILNGSVR--NSKGKSVSWSSK 61
D DI V P + +L+ S + NSKG+ W+ K
Sbjct: 230 DPDIQSEVSVQSPEAIAQQPAQVLSQSPKSINSKGRKRKWNEK 272
Score = 38 (18.4 bits), Expect = 8.6e-34, Sum P(4) = 8.6e-34
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 637 AYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP-PEMKNLKE 690
A+ C + K LV Y+ E+ E+ + D GP P L++
Sbjct: 1090 AFPSCGPCLEQSNEEHSNQVKTLVSYYFEEEEEEEETMTDT--QGPKPGQTQLQD 1142
Score = 38 (18.4 bits), Expect = 2.8e-17, Sum P(4) = 2.8e-17
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 561 NKLEVVVATIAFGMGIDKLNVRRIIHY-GW-PQSLEAYYQEAG 601
+ LE V +A MG +VR+ +H W P+ + Q G
Sbjct: 992 SSLEFGVVELADSMGWKLASVRQALHQLKWDPEPKKGAAQGTG 1034
>UNIPROTKB|O94761 [details] [associations]
symbol:RECQL4 "ATP-dependent DNA helicase Q4" species:9606
"Homo sapiens" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0032508
"DNA duplex unwinding" evidence=IDA] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IMP] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0000405 "bubble DNA binding"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0006260
"DNA replication" evidence=IDA] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0007275 "multicellular organismal development"
evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0007275 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000405
EMBL:AB006532 EMBL:AB026546 EMBL:DQ176868 EMBL:BC011602
EMBL:BC013277 IPI:IPI00014925 RefSeq:NP_004251.3 UniGene:Hs.31442
PDB:2KMU PDBsum:2KMU ProteinModelPortal:O94761 SMR:O94761
DIP:DIP-48475N IntAct:O94761 MINT:MINT-1432307 STRING:O94761
PhosphoSite:O94761 PaxDb:O94761 PRIDE:O94761 GeneID:9401
KEGG:hsa:9401 UCSC:uc003zdj.3 CTD:9401 GeneCards:GC08M145738
HGNC:HGNC:9949 MIM:218600 MIM:266280 MIM:268400 MIM:603780
neXtProt:NX_O94761 Orphanet:1225 Orphanet:3021 Orphanet:221016
PharmGKB:PA34316 HOGENOM:HOG000264957 HOVERGEN:HBG065925
InParanoid:O94761 KO:K10730 EvolutionaryTrace:O94761
GenomeRNAi:9401 NextBio:35219 CleanEx:HS_RECQL4
Genevestigator:O94761 GermOnline:ENSG00000160957 InterPro:IPR021110
Pfam:PF11719 Uniprot:O94761
Length = 1208
Score = 248 (92.4 bits), Expect = 4.5e-33, Sum P(2) = 4.5e-33
Identities = 72/225 (32%), Positives = 113/225 (50%)
Query: 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVISPL 222
+ GH + + Q+ A+ L+ L++ TG+GKSLC+Q+PALL + + +V+SPL
Sbjct: 474 EQLGHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPL 533
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIRLIKPLQ 279
+SLM DQ S L AC + SG + E QK ++ + PE ++ L
Sbjct: 534 LSLMDDQVSGLPPCLKAAC-IHSGMTRKQRESVLQKIRAAQVHVLMLTPEALVGA-GGLP 591
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL-SVLRENFGANNLKSLKFDIPLMALTA 338
A+ +A IDE HC+S+W H+FRP Y R+ VLRE G + + LTA
Sbjct: 592 PAAQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERMGVHCF---------LGLTA 642
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
TAT + D+ + L +++ + NL SV + + +A
Sbjct: 643 TATRRTASDVAQHLAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQA 687
Score = 204 (76.9 bits), Expect = 4.5e-33, Sum P(2) = 4.5e-33
Identities = 59/147 (40%), Positives = 79/147 (53%)
Query: 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYL--C------- 533
DRDTD++ T L K + L + IIY R++T IA L C
Sbjct: 681 DRDTDQAL-LTLLQGKRFQNLDSI---------IIYCNRREDTERIAALLRTCLHAAWVP 730
Query: 534 GFGVKAA-----AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYG 588
G G +A AY+A + + RRV F + +L VVVAT+AFGMG+D+ +VR ++H G
Sbjct: 731 GSGGRAPKTTAEAYHAGMCSRERRRVQRAFMQGQLRVVVATVAFGMGLDRPDVRAVLHLG 790
Query: 589 WPQSLEAYYQEAGRAGRDGHLADCVLY 615
P S E+Y Q GRAGRDG A C L+
Sbjct: 791 LPPSFESYVQAVGRAGRDGQPAHCHLF 817
>UNIPROTKB|F1RSP7 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
EMBL:CU468594 Ensembl:ENSSSCT00000006477 Uniprot:F1RSP7
Length = 1204
Score = 247 (92.0 bits), Expect = 4.0e-32, Sum P(2) = 4.0e-32
Identities = 81/254 (31%), Positives = 120/254 (47%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
+D +V L++ GH + Q+ + L+ L++ TG GKSLC+Q+PALL +
Sbjct: 470 ADTPAEVFQALEQ-LGHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPALLYSR 528
Query: 215 ----VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVC 267
+ +VISPL+SLM DQ S L G+ A + SG N QKA ++ +
Sbjct: 529 RSPCLTLVISPLMSLMDDQVSGLPP-GLKAACIHSGMSKKQRNSALQKARSAQVQVLMLS 587
Query: 268 PETVIRL-IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL-SVLRENFGANNLK 325
PE + L L + +A IDE HC+S+W H+FRP Y R+ VLRE G +
Sbjct: 588 PEALAGAGAAGLAFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSCF- 646
Query: 326 SLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASY 385
+ LTATAT D+ + L +++ + NL SV + +A
Sbjct: 647 --------LGLTATATRSTALDVAQHLGVAEESVLRGQGTIPANLHLSVSMDRDPDQALV 698
Query: 386 ---KKD-FCQLIDI 395
+ D FC L I
Sbjct: 699 TLLQSDRFCALDSI 712
Score = 196 (74.1 bits), Expect = 4.0e-32, Sum P(2) = 4.0e-32
Identities = 39/77 (50%), Positives = 51/77 (66%)
Query: 539 AAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQ 598
A AY+A + + RV F E +L VVVAT+AFGMG+D+ +VR ++H G P S E+Y Q
Sbjct: 750 AEAYHAGMCSRERWRVQRAFMEGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQ 809
Query: 599 EAGRAGRDGHLADCVLY 615
GRAGRDG A C L+
Sbjct: 810 AVGRAGRDGQPAHCHLF 826
>UNIPROTKB|K7GSZ9 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
InterPro:IPR021110 Pfam:PF11719 EMBL:CU468594
Ensembl:ENSSSCT00000036186 Uniprot:K7GSZ9
Length = 1209
Score = 247 (92.0 bits), Expect = 4.0e-32, Sum P(2) = 4.0e-32
Identities = 81/254 (31%), Positives = 120/254 (47%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
+D +V L++ GH + Q+ + L+ L++ TG GKSLC+Q+PALL +
Sbjct: 475 ADTPAEVFQALEQ-LGHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPALLYSR 533
Query: 215 ----VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVC 267
+ +VISPL+SLM DQ S L G+ A + SG N QKA ++ +
Sbjct: 534 RSPCLTLVISPLMSLMDDQVSGLPP-GLKAACIHSGMSKKQRNSALQKARSAQVQVLMLS 592
Query: 268 PETVIRL-IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL-SVLRENFGANNLK 325
PE + L L + +A IDE HC+S+W H+FRP Y R+ VLRE G +
Sbjct: 593 PEALAGAGAAGLAFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSCF- 651
Query: 326 SLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASY 385
+ LTATAT D+ + L +++ + NL SV + +A
Sbjct: 652 --------LGLTATATRSTALDVAQHLGVAEESVLRGQGTIPANLHLSVSMDRDPDQALV 703
Query: 386 ---KKD-FCQLIDI 395
+ D FC L I
Sbjct: 704 TLLQSDRFCALDSI 717
Score = 196 (74.1 bits), Expect = 4.0e-32, Sum P(2) = 4.0e-32
Identities = 39/77 (50%), Positives = 51/77 (66%)
Query: 539 AAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQ 598
A AY+A + + RV F E +L VVVAT+AFGMG+D+ +VR ++H G P S E+Y Q
Sbjct: 755 AEAYHAGMCSRERWRVQRAFMEGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQ 814
Query: 599 EAGRAGRDGHLADCVLY 615
GRAGRDG A C L+
Sbjct: 815 AVGRAGRDGQPAHCHLF 831
Score = 38 (18.4 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 438 DGYYDDEDVGNSPMGKEM 455
+G D++D G PM +E+
Sbjct: 402 EGGKDEDDTGTLPMLEEV 419
>UNIPROTKB|F1RV44 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0045875 "negative regulation of sister chromatid cohesion"
evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008284 GO:GO:0008270
GO:GO:0003676 GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043473 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 GO:GO:0045875 InterPro:IPR021110 Pfam:PF11719
OMA:DMPEEAI EMBL:CU468594 Ensembl:ENSSSCT00000006463 Uniprot:F1RV44
Length = 1227
Score = 247 (92.0 bits), Expect = 4.2e-32, Sum P(2) = 4.2e-32
Identities = 81/254 (31%), Positives = 120/254 (47%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
+D +V L++ GH + Q+ + L+ L++ TG GKSLC+Q+PALL +
Sbjct: 493 ADTPAEVFQALEQ-LGHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPALLYSR 551
Query: 215 ----VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVC 267
+ +VISPL+SLM DQ S L G+ A + SG N QKA ++ +
Sbjct: 552 RSPCLTLVISPLMSLMDDQVSGLPP-GLKAACIHSGMSKKQRNSALQKARSAQVQVLMLS 610
Query: 268 PETVIRL-IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL-SVLRENFGANNLK 325
PE + L L + +A IDE HC+S+W H+FRP Y R+ VLRE G +
Sbjct: 611 PEALAGAGAAGLAFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSCF- 669
Query: 326 SLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASY 385
+ LTATAT D+ + L +++ + NL SV + +A
Sbjct: 670 --------LGLTATATRSTALDVAQHLGVAEESVLRGQGTIPANLHLSVSMDRDPDQALV 721
Query: 386 ---KKD-FCQLIDI 395
+ D FC L I
Sbjct: 722 TLLQSDRFCALDSI 735
Score = 196 (74.1 bits), Expect = 4.2e-32, Sum P(2) = 4.2e-32
Identities = 39/77 (50%), Positives = 51/77 (66%)
Query: 539 AAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQ 598
A AY+A + + RV F E +L VVVAT+AFGMG+D+ +VR ++H G P S E+Y Q
Sbjct: 773 AEAYHAGMCSRERWRVQRAFMEGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQ 832
Query: 599 EAGRAGRDGHLADCVLY 615
GRAGRDG A C L+
Sbjct: 833 AVGRAGRDGQPAHCHLF 849
Score = 38 (18.4 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 438 DGYYDDEDVGNSPMGKEM 455
+G D++D G PM +E+
Sbjct: 420 EGGKDEDDTGTLPMLEEV 437
>UNIPROTKB|F1RMJ3 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR012532 Pfam:PF00270 Pfam:PF08072
PROSITE:PS00690 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:CT757491 Ensembl:ENSSSCT00000002034
Uniprot:F1RMJ3
Length = 541
Score = 365 (133.5 bits), Expect = 5.0e-31, P = 5.0e-31
Identities = 82/197 (41%), Positives = 119/197 (60%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 347 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSSGVTIVISPLR 406
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 407 SLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLI 466
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L + +A F IDE HCVS+WGHDFRPDY+R+++LR+ F + +P+MA
Sbjct: 467 STLENLYNRKLLARFVIDEAHCVSQWGHDFRPDYKRMNMLRQKFPS---------VPVMA 517
Query: 336 LTATATIQVREDILKSL 352
LTATA +V++DIL L
Sbjct: 518 LTATANPRVQKDILTQL 534
>UNIPROTKB|A5D786 [details] [associations]
symbol:RECQL4 "RECQL4 protein" species:9913 "Bos taurus"
[GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0045875 "negative regulation of sister chromatid cohesion"
evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008284 GO:GO:0003676 GO:GO:0006310
GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043473 eggNOG:COG0514 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0045875 CTD:9401
HOGENOM:HOG000264957 HOVERGEN:HBG065925 KO:K10730
InterPro:IPR021110 Pfam:PF11719 OrthoDB:EOG4CJVGG EMBL:DAAA02037439
EMBL:BC140466 IPI:IPI00852560 RefSeq:NP_001091506.1
UniGene:Bt.27882 STRING:A5D786 Ensembl:ENSBTAT00000056581
GeneID:515472 KEGG:bta:515472 OMA:DMPEEAI NextBio:20871839
Uniprot:A5D786
Length = 1218
Score = 223 (83.6 bits), Expect = 3.9e-30, Sum P(2) = 3.9e-30
Identities = 72/238 (30%), Positives = 116/238 (48%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
+D +V L++ GH + Q+ + L+ L++ TG+GKSLC+Q+PALL +
Sbjct: 477 ADTPAEVFQALEQ-LGHHAFYPGQERVVMRVLSGMSTLLVLPTGAGKSLCYQLPALLYFR 535
Query: 215 ----VVVVISPLISLMHDQCSKLSKHGVTACFLGSG----QPDNKVEQKALRGMYSIIYV 266
+ +VISPL SLM DQ S L G+ + SG Q D+ + QKA ++ +
Sbjct: 536 RSPCLTLVISPLTSLMDDQLSGLPP-GLKGACIHSGMTKKQRDSAL-QKARAARVQVLML 593
Query: 267 CPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL-SVLRENFGANNLK 325
PE ++ L++ +A +DE HC+S+W H+FRP Y R+ LR+ G +
Sbjct: 594 SPEALVGA-GASTLLSQLPPVAFACLDEAHCLSQWSHNFRPCYLRVCQTLRDQMGVHCF- 651
Query: 326 SLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
+ LTATAT D+ L +++ + + NL SV + +A
Sbjct: 652 --------LGLTATATRSTALDVAWHLGVTEESVLRGPATIPDNLHLSVSSDRDPDQA 701
Score = 202 (76.2 bits), Expect = 3.9e-30, Sum P(2) = 3.9e-30
Identities = 40/77 (51%), Positives = 51/77 (66%)
Query: 539 AAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQ 598
A AY+A L + RRV F E +L +VVAT+AFGMG+D+ +VR ++H G P S E Y Q
Sbjct: 755 AEAYHAGLCSRERRRVQRAFMEGRLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFETYVQ 814
Query: 599 EAGRAGRDGHLADCVLY 615
GRAGRDG A C L+
Sbjct: 815 AVGRAGRDGQPAHCHLF 831
>UNIPROTKB|H9KZS5 [details] [associations]
symbol:H9KZS5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0043473 "pigmentation"
evidence=IEA] [GO:0045875 "negative regulation of sister chromatid
cohesion" evidence=IEA] [GO:0048705 "skeletal system morphogenesis"
evidence=IEA] InterPro:IPR001650 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00550000074520
EMBL:AADN02044351 EMBL:AADN02044352 EMBL:AADN02044353
Ensembl:ENSGALT00000018179 OMA:CATREST Uniprot:H9KZS5
Length = 252
Score = 220 (82.5 bits), Expect = 8.0e-26, Sum P(2) = 8.0e-26
Identities = 42/77 (54%), Positives = 56/77 (72%)
Query: 539 AAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQ 598
AAAY+A L ++ RRV + F +L VVVAT+AFGMG+DK +VR ++HY P++ E+Y Q
Sbjct: 172 AAAYHAGLTAAERRRVQSAFMRGRLRVVVATVAFGMGLDKADVRAVLHYNMPRNFESYVQ 231
Query: 599 EAGRAGRDGHLADCVLY 615
E GRAGRDG A C L+
Sbjct: 232 EIGRAGRDGEPAWCHLF 248
Score = 108 (43.1 bits), Expect = 8.0e-26, Sum P(2) = 8.0e-26
Identities = 38/111 (34%), Positives = 54/111 (48%)
Query: 290 FA-IDEVHCVSKWGHDFRPDYRRLSVLRENF--------GANNLKS----LKFDIPL--- 333
FA IDE HC+S+W H+FRP Y RL + E G ++L S L+ + +
Sbjct: 1 FACIDEAHCISEWSHNFRPSYLRLCKVCEVLPWGEQCGDGPHHLLSPSSVLRDRLGIRCF 60
Query: 334 MALTATATIQVREDILKSLHMSKGTKF-VLTSFFRPNLRFSVKHSKTSSRA 383
+ALTATAT+ D+ L + + V + PNL+ SV RA
Sbjct: 61 LALTATATVATARDVAAHLGIPQQDGIAVQCAAVPPNLQLSVSVEWDRDRA 111
>UNIPROTKB|F1RMJ2 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR018982 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0043140 GeneTree:ENSGT00550000074520
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:CT757491
Ensembl:ENSSSCT00000002035 OMA:REMTENT Uniprot:F1RMJ2
Length = 511
Score = 248 (92.4 bits), Expect = 7.9e-18, P = 7.9e-18
Identities = 66/183 (36%), Positives = 101/183 (55%)
Query: 536 GVKAAAYNASLPKSQLRRV-HTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLE 594
G+ A AY+A L S V H +++ +V+ ATIAFGMGIDK +VR +IH P+S+E
Sbjct: 9 GLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVE 68
Query: 595 AYYQEAGRAGRDGHLADCVL---YANLSSMPTL-LPSRRSEDQTKQA-YRMLSDCFRYGM 649
YYQE+GRAGRDG ++ C+L Y +++ + L L + TK+ + L Y
Sbjct: 69 GYYQESGRAGRDGEISQCLLFYTYHDVTRLKRLILMEKDGNHHTKETHFNNLYSMVHYCE 128
Query: 650 NTSCCRAKILVEYFGE-DFSHEKCQLC-DVCVDGPPEMKNLK--EEANILMQVIAAYNEQ 705
N + CR L+ YFGE +F+ C+ DV D + K+ K + + + ++ E
Sbjct: 129 NIAECRRIQLLAYFGENEFNPNFCKKYPDVSCDNCCKTKDYKTRDVTDDVKNIVRFVQEH 188
Query: 706 SNS 708
S+S
Sbjct: 189 SSS 191
>UNIPROTKB|Q47ZX4 [details] [associations]
symbol:CPS_2945 "Putative DEAD/DEAH box helicase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
Uniprot:Q47ZX4
Length = 843
Score = 180 (68.4 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 39/118 (33%), Positives = 70/118 (59%)
Query: 502 RLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGV-KAAAYNASLPKSQLRRVHTEFHE 560
R+ L +PL I+Y ++++ ++ +L G+ + A +N ++ ++ +
Sbjct: 375 RVIALPKPL-----ILYTTLVQDSIDLSCHLKAIGLNRIALFNGKTDIRSREKIIEQWQK 429
Query: 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYAN 617
+ L++++AT AFG+G+DK NV+ +IH P +++ YYQE GRAGRDG A V+Y N
Sbjct: 430 DDLDIIIATSAFGVGMDKSNVKSVIHACIPDNIDRYYQEIGRAGRDGEAATSEVIYYN 487
Score = 123 (48.4 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 51/195 (26%), Positives = 84/195 (43%)
Query: 197 TGSGKSLCFQIPALLTGK--VVVVISPLISLMHDQCSK----LSKHGVTAC--FLGSGQ- 247
TG GK+L L + + +VI P + L +Q + L K + + GQ
Sbjct: 173 TGCGKTLVAHACMLFSKSKALTIVIVPTVGLAIEQGKRAKELLEKADSDSVQNYAWHGQL 232
Query: 248 PD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQ-RLAESRGIALFAIDEVHCVSKWGH 303
D +++ +I+ PE+V + PL RLA+ IA IDE H + WG
Sbjct: 233 SDGEKSEIRDNIDNDKQKVIFTSPESVTGSLLPLLFRLAKQNSIANIIIDEAHLIDTWGS 292
Query: 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT 363
+FR +++R L + + + F LM+ T T Q L +L+ K ++
Sbjct: 293 NFRSEFQRFGALVASL--RQVSNSPFKTILMSATFT---QSNIGSLTTLYCESDNKPIVV 347
Query: 364 S--FFRPNLRFSVKH 376
+ F RP + S K+
Sbjct: 348 NGNFLRPEISSSYKN 362
>TIGR_CMR|CPS_2945 [details] [associations]
symbol:CPS_2945 "putative DEAD/DEAH box helicase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
Uniprot:Q47ZX4
Length = 843
Score = 180 (68.4 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 39/118 (33%), Positives = 70/118 (59%)
Query: 502 RLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGV-KAAAYNASLPKSQLRRVHTEFHE 560
R+ L +PL I+Y ++++ ++ +L G+ + A +N ++ ++ +
Sbjct: 375 RVIALPKPL-----ILYTTLVQDSIDLSCHLKAIGLNRIALFNGKTDIRSREKIIEQWQK 429
Query: 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYAN 617
+ L++++AT AFG+G+DK NV+ +IH P +++ YYQE GRAGRDG A V+Y N
Sbjct: 430 DDLDIIIATSAFGVGMDKSNVKSVIHACIPDNIDRYYQEIGRAGRDGEAATSEVIYYN 487
Score = 123 (48.4 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 51/195 (26%), Positives = 84/195 (43%)
Query: 197 TGSGKSLCFQIPALLTGK--VVVVISPLISLMHDQCSK----LSKHGVTAC--FLGSGQ- 247
TG GK+L L + + +VI P + L +Q + L K + + GQ
Sbjct: 173 TGCGKTLVAHACMLFSKSKALTIVIVPTVGLAIEQGKRAKELLEKADSDSVQNYAWHGQL 232
Query: 248 PD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQ-RLAESRGIALFAIDEVHCVSKWGH 303
D +++ +I+ PE+V + PL RLA+ IA IDE H + WG
Sbjct: 233 SDGEKSEIRDNIDNDKQKVIFTSPESVTGSLLPLLFRLAKQNSIANIIIDEAHLIDTWGS 292
Query: 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT 363
+FR +++R L + + + F LM+ T T Q L +L+ K ++
Sbjct: 293 NFRSEFQRFGALVASL--RQVSNSPFKTILMSATFT---QSNIGSLTTLYCESDNKPIVV 347
Query: 364 S--FFRPNLRFSVKH 376
+ F RP + S K+
Sbjct: 348 NGNFLRPEISSSYKN 362
>UNIPROTKB|J3KSL7 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR002464
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00690 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000580078
Uniprot:J3KSL7
Length = 198
Score = 224 (83.9 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 53/131 (40%), Positives = 68/131 (51%)
Query: 263 IIYVCPETVIRL-IKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFG 320
I+Y+ PE +P L L ++ +DE HCVS+WGHDFRPDY RL LR G
Sbjct: 29 ILYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLG 88
Query: 321 ANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT- 379
P +ALTATAT QV+ED+ +LH+ K T FR NL + V+ +
Sbjct: 89 ---------HAPCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELI 139
Query: 380 SSRASYKKDFC 390
S KDFC
Sbjct: 140 SDPYGNLKDFC 150
>UNIPROTKB|E2RDN3 [details] [associations]
symbol:E2RDN3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 PROSITE:PS50158 SMART:SM00343
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 GO:GO:0008026
OMA:DMPEEAI EMBL:AAEX03008976 EMBL:AAEX03008977 EMBL:AAEX03008978
Ensembl:ENSCAFT00000002463 Uniprot:E2RDN3
Length = 1163
Score = 252 (93.8 bits), Expect = 7.0e-16, Sum P(3) = 7.0e-16
Identities = 73/228 (32%), Positives = 112/228 (49%)
Query: 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVISPL 222
+ GH + + Q++ + L+ L++ TG+GKSLC+Q+PALL + + +VISPL
Sbjct: 487 EQLGHRAFRPRQEQVVMRVLSGMSTLLVLPTGAGKSLCYQLPALLYARRSPCLTLVISPL 546
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIRLIKPLQ 279
+SLM DQ S L C + SG + E QK ++ + PET++ +
Sbjct: 547 LSLMDDQVSSLPPCLKGVC-IHSGMSQKQRESALQKVHAAQVQLLVLSPETLVGAGAGMP 605
Query: 280 -RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL-SVLRENFGANNLKSLKFDIPLMALT 337
L + +A IDE HC+S+W H+FRP Y R+ VLRE+ G + LT
Sbjct: 606 GHLPQLPPVAFACIDEAHCISQWSHNFRPCYLRVCKVLREHMGVRCF---------LGLT 656
Query: 338 ATATIQVREDILKSLHMSKGTKFVLT--SFFRPNLRFSVKHSKTSSRA 383
ATAT D+ + H+ + VL + NL SV + +A
Sbjct: 657 ATATRSTARDVAR--HLGVAEELVLRGPATVPSNLHLSVSRDRDPDQA 702
Score = 42 (19.8 bits), Expect = 7.0e-16, Sum P(3) = 7.0e-16
Identities = 12/54 (22%), Positives = 25/54 (46%)
Query: 675 CDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKK-QKFMDR 727
C C++ P E ++ + +A + E +D+ G+ G +K Q + D+
Sbjct: 1040 CGPCLEQPDEERSTRLKALLSGYFEEEEEEGPGGSEDEQGLEPGQEKIQDWEDQ 1093
Score = 38 (18.4 bits), Expect = 7.0e-16, Sum P(3) = 7.0e-16
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 469 DVACGEFYGHSPHRDRDTDRSFERT 493
D C YGH R+++ RT
Sbjct: 1004 DQICDFLYGHIQAREQEALARLRRT 1028
Score = 37 (18.1 bits), Expect = 8.9e-16, Sum P(3) = 8.9e-16
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 664 GEDFSHEKCQLCD 676
G+ +HE+ Q+CD
Sbjct: 996 GDLTAHERDQICD 1008
>POMBASE|SPBCPT2R1.08c [details] [associations]
symbol:tlh2 "RecQ type DNA helicase Tlh1" species:4896
"Schizosaccharomyces pombe" [GO:0000722 "telomere maintenance via
recombination" evidence=IEP] [GO:0000781 "chromosome, telomeric
region" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 PomBase:SPBCPT2R1.08c
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000781 GO:GO:0000722 HOGENOM:HOG000213224 OrthoDB:EOG4XH37R
EMBL:BX784043 RefSeq:XP_001713158.1 ProteinModelPortal:Q1RKN3
EnsemblFungi:SPBCPT2R1.08c.1 GeneID:5802845 KEGG:spo:SPBCPT2R1.08c
NextBio:20892152 Uniprot:Q1RKN3
Length = 1919
Score = 163 (62.4 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 60/180 (33%), Positives = 82/180 (45%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKA----AAYNASLPKSQLRRVHTEFHEN---KLE 564
DG II+ T+K+ I + L + A Y + + R+++ + N K
Sbjct: 1415 DGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEE-RQMNFDAFRNANGKTR 1473
Query: 565 VVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL-YANLSSMPT 623
+++AT AFG+GI+ + VR ++HYG P S Y QE GRAGRDG A L Y S T
Sbjct: 1474 IMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYDS--T 1531
Query: 624 LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDF---SHEKCQLCDVCVD 680
S ED K L+D NT C R+ + E GE S C C C D
Sbjct: 1532 W--SSYVEDSMKN---FLND------NTMCVRSFLASEMDGECVCCASFANCVYCSRCSD 1580
Score = 100 (40.3 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 49/170 (28%), Positives = 75/170 (44%)
Query: 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKVV----VVISPL 222
SLK FQ S L + + + TG GKSL F IPAL+ GKV+ +V+ P+
Sbjct: 1192 SLKQFQSVYFSL-LNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPM 1250
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIRLIKPLQ 279
+SL D ++++ G+ C G+ V + L ++ + Y T L + +
Sbjct: 1251 MSLRQDMMLRVNEKGLLVCS-GNWTAFKDVRLTLETQLPDLFILTYESALTNSGL-RFFE 1308
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKF 329
LA +A IDE H + G +R R S L + +L S F
Sbjct: 1309 SLATLGRLARVVIDEAHLLLTSGA-WRTALSRASRLSGLYAPLHLLSATF 1357
Score = 70 (29.7 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 43/170 (25%), Positives = 68/170 (40%)
Query: 206 QIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYS 262
Q P + V +V+ P++SL D ++++ G+ C G+ V + L ++
Sbjct: 1234 QTPGKVMNMVTLVLVPMMSLRQDMMLRVNEKGLLVCS-GNWTAFKDVRLTLETQLPDLFI 1292
Query: 263 IIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGAN 322
+ Y T L + + LA +A IDE H + G +R R S L +
Sbjct: 1293 LTYESALTNSGL-RFFESLATLGRLARVVIDEAHLLLTSGA-WRTALSRASRLSGLYAPL 1350
Query: 323 NLKSLKFDIPL-MALTAT---------ATIQVREDILKSLHMSKGTKFVL 362
+L S F L M T T RE+I LH T+F+L
Sbjct: 1351 HLLSATFPRQLEMVARQTFCTNFYVLRETSTARENIFYFLHPYDNTEFLL 1400
Score = 40 (19.1 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATG 198
LK H+ S++K ++ +A S + CLV + G
Sbjct: 844 LKLHWSKSAIKKYETKA-SIFNELLFCLVYISAG 876
>ASPGD|ASPL0000073665 [details] [associations]
symbol:AN5092 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:BN001303
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GO:GO:0008026 EMBL:AACD01000086 InterPro:IPR022698 Pfam:PF12013
RefSeq:XP_662696.1 ProteinModelPortal:Q5B2Y8
EnsemblFungi:CADANIAT00005288 GeneID:2872891 KEGG:ani:AN5092.2
HOGENOM:HOG000217656 OrthoDB:EOG45XC49 Uniprot:Q5B2Y8
Length = 1571
Score = 156 (60.0 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 55/188 (29%), Positives = 97/188 (51%)
Query: 496 LNKPAERLSMLQEPLE---DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLR 552
L +P R +Q+ ++ DG I+Y + + +I+ C G +A ++A L ++ +
Sbjct: 1118 LTQPNVR-GFIQQRIQQAGDGQVIVYANIKSQVDAIS---CELGCEAY-HSAVLDQTGVM 1172
Query: 553 RVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC 612
+ F ++ ++ AT A GMGID ++R +IH G P++L Y QE+GRAGRDG LA
Sbjct: 1173 Q---RFQSSQTRIIAATSALGMGIDIPDIRCVIHLGRPRTLLDYSQESGRAGRDG-LASK 1228
Query: 613 VLYANLSSMPTLLP--SRRSEDQTK--QAYRMLSDCFRYGMNTSCCRAKILVEYFG---E 665
+ + L P R S+ + + QAY + + G+ CR +L +Y +
Sbjct: 1229 AVIVHPQGWDDLDPWVDRVSDAEFEHIQAYMEVVE----GVG---CRRYVLDQYLDGTVD 1281
Query: 666 DFSHEKCQ 673
++ ++CQ
Sbjct: 1282 GYTRQQCQ 1289
Score = 105 (42.0 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 41/146 (28%), Positives = 63/146 (43%)
Query: 174 LKNFQKEALSAWLAHHDCLV-LAATGSGKSLCFQIPALLT-GKVVVVISPLISLMHDQCS 231
L+ Q AL A +V + TGSGKS+ F +PA G +++ PL+SL D
Sbjct: 916 LRGVQAPALKAIQDGASPVVAIMPTGSGKSMLFMLPAYAAPGGCTIMVVPLLSLRADLMM 975
Query: 232 KLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIR--LIKPLQRLAESRGIAL 289
+ G++ S +P ++ +I+ V PE+ L R + R +
Sbjct: 976 RCQALGISCVSWESRRPPDEA---------AIVLVTPESTENPDFHTFLNRQRQMRRLDR 1026
Query: 290 FAIDEVHCVSKWGHDFRPDYRRLSVL 315
IDE H + DF+P RL L
Sbjct: 1027 IVIDECHVILNDQKDFQPAMARLGRL 1052
Score = 45 (20.9 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 453 KEMSVEFLENDS-VDDWDVACGEFYGHSPH 481
+E ++ LE D +D+ E GHSPH
Sbjct: 798 REQAMAALEADEDLDEMGNIADEQAGHSPH 827
>POMBASE|SPAC212.11 [details] [associations]
symbol:tlh1 "RecQ type DNA helicase" species:4896
"Schizosaccharomyces pombe" [GO:0000722 "telomere maintenance via
recombination" evidence=IEP] [GO:0000781 "chromosome, telomeric
region" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004695 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF03595 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 PomBase:SPBCPT2R1.08c GO:GO:0016021 GO:GO:0005524
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0055085 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000781
GO:GO:0000722 eggNOG:COG0514 EMBL:BK005597
ProteinModelPortal:Q5EAK4 TCDB:2.A.16.2.2 HOGENOM:HOG000213224
OrthoDB:EOG4XH37R NextBio:20892297 Uniprot:Q5EAK4
Length = 2100
Score = 163 (62.4 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 60/180 (33%), Positives = 82/180 (45%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKA----AAYNASLPKSQLRRVHTEFHEN---KLE 564
DG II+ T+K+ I + L + A Y + + R+++ + N K
Sbjct: 1596 DGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEE-RQMNFDAFRNANGKTR 1654
Query: 565 VVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL-YANLSSMPT 623
+++AT AFG+GI+ + VR ++HYG P S Y QE GRAGRDG A L Y S T
Sbjct: 1655 IMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYDS--T 1712
Query: 624 LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDF---SHEKCQLCDVCVD 680
S ED K L+D NT C R+ + E GE S C C C D
Sbjct: 1713 W--SSYVEDSMKN---FLND------NTMCVRSFLASEMDGECVCCASFANCVYCSRCSD 1761
Score = 100 (40.3 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 49/170 (28%), Positives = 75/170 (44%)
Query: 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKVV----VVISPL 222
SLK FQ S L + + + TG GKSL F IPAL+ GKV+ +V+ P+
Sbjct: 1373 SLKQFQSVYFSL-LNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPM 1431
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIRLIKPLQ 279
+SL D ++++ G+ C G+ V + L ++ + Y T L + +
Sbjct: 1432 MSLRQDMMLRVNEKGLLVCS-GNWTAFKDVRLTLETQLPDLFILTYESALTNSGL-RFFE 1489
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKF 329
LA +A IDE H + G +R R S L + +L S F
Sbjct: 1490 SLATLGRLARVVIDEAHLLLTSGA-WRTALSRASRLSGLYAPLHLLSATF 1538
Score = 70 (29.7 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 43/170 (25%), Positives = 68/170 (40%)
Query: 206 QIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYS 262
Q P + V +V+ P++SL D ++++ G+ C G+ V + L ++
Sbjct: 1415 QTPGKVMNMVTLVLVPMMSLRQDMMLRVNEKGLLVCS-GNWTAFKDVRLTLETQLPDLFI 1473
Query: 263 IIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGAN 322
+ Y T L + + LA +A IDE H + G +R R S L +
Sbjct: 1474 LTYESALTNSGL-RFFESLATLGRLARVVIDEAHLLLTSGA-WRTALSRASRLSGLYAPL 1531
Query: 323 NLKSLKFDIPL-MALTAT---------ATIQVREDILKSLHMSKGTKFVL 362
+L S F L M T T RE+I LH T+F+L
Sbjct: 1532 HLLSATFPRQLEMVARQTFCTNFYVLRETSTARENIFYFLHPYDNTEFLL 1581
Score = 40 (19.1 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATG 198
LK H+ S++K ++ +A S + CLV + G
Sbjct: 1025 LKLHWSKSAIKKYETKA-SIFNELLFCLVYISAG 1057
>UNIPROTKB|F8WD97 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 EMBL:AC006559 HGNC:HGNC:9948 ChiTaRS:RECQL
IPI:IPI00792775 ProteinModelPortal:F8WD97 SMR:F8WD97
Ensembl:ENST00000396093 ArrayExpress:F8WD97 Bgee:F8WD97
Uniprot:F8WD97
Length = 211
Score = 177 (67.4 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 49/169 (28%), Positives = 77/169 (45%)
Query: 121 IVEEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKE 180
+ ++ K+ D E DS + KE W KV +L+ F + Q E
Sbjct: 42 LTKKIKQCLEDSDAGASNEYDSSPAAWNKE---DFPWSGKVKDILQNVFKLEKFRPLQLE 98
Query: 181 ALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTA 240
++ +A + ++ TG GKSLC+Q+PAL + +VI PLISLM DQ L + G++A
Sbjct: 99 TINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISA 158
Query: 241 CFLGSGQPDNKV-----EQKALRGMYSIIYVCPETVIRLIKPLQRLAES 284
L + V E +IYV PE + + + RL ++
Sbjct: 159 TMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKA 207
>UNIPROTKB|F8WA66 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 EMBL:AC006559 HGNC:HGNC:9948 ChiTaRS:RECQL
IPI:IPI01013557 ProteinModelPortal:F8WA66 SMR:F8WA66 PRIDE:F8WA66
Ensembl:ENST00000314748 ArrayExpress:F8WA66 Bgee:F8WA66
Uniprot:F8WA66
Length = 199
Score = 175 (66.7 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 47/158 (29%), Positives = 72/158 (45%)
Query: 121 IVEEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKE 180
+ ++ K+ D E DS + KE W KV +L+ F + Q E
Sbjct: 42 LTKKIKQCLEDSDAGASNEYDSSPAAWNKE---DFPWSGKVKDILQNVFKLEKFRPLQLE 98
Query: 181 ALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTA 240
++ +A + ++ TG GKSLC+Q+PAL + +VI PLISLM DQ L + G++A
Sbjct: 99 TINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISA 158
Query: 241 CFLGSGQPDNKV-----EQKALRGMYSIIYVCPETVIR 273
L + V E +IYV PE + +
Sbjct: 159 TMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAK 196
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 141 (54.7 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 37/137 (27%), Positives = 61/137 (44%)
Query: 477 GHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG 536
GHS H D + F D L + L + II+ TR +T +AK L
Sbjct: 213 GHSEHVD--IAKRFYLADNLTQKEALLQHFLVTEKSQQIIIFTATRSDTDRLAKLLTEQN 270
Query: 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAY 596
+ A A + L + Q ++ F + + +++V T G+D +NV +I++ P+ E +
Sbjct: 271 LNAVALSGELNQGQRNQIMESFSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEF 330
Query: 597 YQEAGRAGRDGHLADCV 613
GR GR G D +
Sbjct: 331 VHRIGRTGRAGTKGDAI 347
Score = 95 (38.5 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
+H G + Q++A+ A +A HD + + TGSGK+L F IPAL
Sbjct: 17 EHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPAL 60
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 141 (54.7 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 37/137 (27%), Positives = 61/137 (44%)
Query: 477 GHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG 536
GHS H D + F D L + L + II+ TR +T +AK L
Sbjct: 213 GHSEHVD--IAKRFYLADNLTQKEALLQHFLVTEKSQQIIIFTATRSDTDRLAKLLTEQN 270
Query: 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAY 596
+ A A + L + Q ++ F + + +++V T G+D +NV +I++ P+ E +
Sbjct: 271 LNAVALSGELNQGQRNQIMESFSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEF 330
Query: 597 YQEAGRAGRDGHLADCV 613
GR GR G D +
Sbjct: 331 VHRIGRTGRAGTKGDAI 347
Score = 95 (38.5 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
+H G + Q++A+ A +A HD + + TGSGK+L F IPAL
Sbjct: 17 EHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPAL 60
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 140 (54.3 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 42/144 (29%), Positives = 66/144 (45%)
Query: 470 VACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIA 529
VA G H+ H+D + R + L +K A LS L II+ TR +T +A
Sbjct: 208 VAIGT--AHAEHQDI-SQRIYLCDHLDHKEA-LLSRLLSDESHKQVIIFTATRADTERLA 263
Query: 530 KYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW 589
L G AA + L ++ ++ +F + +++V T G+D LNV +I++
Sbjct: 264 AKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDM 323
Query: 590 PQSLEAYYQEAGRAGRDGHLADCV 613
P+ E Y GR GR G D +
Sbjct: 324 PKFAEEYVHRIGRTGRAGAKGDAI 347
Score = 88 (36.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 52/207 (25%), Positives = 89/207 (42%)
Query: 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTGKV-------V 216
KH G ++ Q++AL LA D + + TGSGK+L F +PAL ++ + V
Sbjct: 17 KHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVISTRALSKRDPRV 76
Query: 217 VVISPLISLMHDQCSKL----SKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI 272
+++ P L H S+L + A + G+ N + KAL I P +
Sbjct: 77 LILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFND-QAKALAKEPHFIVATPGRIA 135
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
++ Q+ G+ L +DE + G F P +L + E ++L F
Sbjct: 136 DHLE--QKNLFLNGLELLILDEADRMLDLG--FAP---QLKAINEAADHKRRQTLMFSA- 187
Query: 333 LMALTATATIQVREDILKS-LHMSKGT 358
L + ++ +LK+ LH++ GT
Sbjct: 188 --TLDHSEINEIAAALLKNPLHVAIGT 212
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 140 (54.3 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 42/144 (29%), Positives = 66/144 (45%)
Query: 470 VACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIA 529
VA G H+ H+D + R + L +K A LS L II+ TR +T +A
Sbjct: 208 VAIGT--AHAEHQDI-SQRIYLCDHLDHKEA-LLSRLLSDESHKQVIIFTATRADTERLA 263
Query: 530 KYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW 589
L G AA + L ++ ++ +F + +++V T G+D LNV +I++
Sbjct: 264 AKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDM 323
Query: 590 PQSLEAYYQEAGRAGRDGHLADCV 613
P+ E Y GR GR G D +
Sbjct: 324 PKFAEEYVHRIGRTGRAGAKGDAI 347
Score = 88 (36.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 52/207 (25%), Positives = 89/207 (42%)
Query: 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTGKV-------V 216
KH G ++ Q++AL LA D + + TGSGK+L F +PAL ++ + V
Sbjct: 17 KHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVISTRALSKRDPRV 76
Query: 217 VVISPLISLMHDQCSKL----SKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI 272
+++ P L H S+L + A + G+ N + KAL I P +
Sbjct: 77 LILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFND-QAKALAKEPHFIVATPGRIA 135
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
++ Q+ G+ L +DE + G F P +L + E ++L F
Sbjct: 136 DHLE--QKNLFLNGLELLILDEADRMLDLG--FAP---QLKAINEAADHKRRQTLMFSA- 187
Query: 333 LMALTATATIQVREDILKS-LHMSKGT 358
L + ++ +LK+ LH++ GT
Sbjct: 188 --TLDHSEINEIAAALLKNPLHVAIGT 212
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 152 (58.6 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 35/127 (27%), Positives = 62/127 (48%)
Query: 508 EPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVV 567
EP E I++V T++ T IA+ L G AAA + +P++Q R T + ++++V
Sbjct: 248 EPFE--AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILV 305
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPS 627
AT G+D + +++Y P E+Y GR GR G +++ + + L
Sbjct: 306 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAI 365
Query: 628 RRSEDQT 634
++ QT
Sbjct: 366 EKATRQT 372
Score = 74 (31.1 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 42/155 (27%), Positives = 62/155 (40%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL----LTGKV--VVVISPLI 223
G+ S Q + A +A D + LA TG+GK+ F IP L +T KV +V+ P
Sbjct: 32 GYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLVPTR 91
Query: 224 SLMHDQCSKLSKHGVTACFLGS----GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
L ++G L G V+ LR ++ P R+I L+
Sbjct: 92 ELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPG---RMIDHLE 148
Query: 280 R--LAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312
R L SR + +DE + G F D R+
Sbjct: 149 RATLDLSR-VDFLVLDEADEMLTMG--FADDVERI 180
>POMBASE|SPAC22F3.08c [details] [associations]
symbol:rok1 "ATP-dependent RNA helicase Rok1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC22F3.08c GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000242486 KO:K14779
PIR:T38183 RefSeq:NP_593033.1 ProteinModelPortal:Q09775
STRING:Q09775 EnsemblFungi:SPAC22F3.08c.1 GeneID:2541786
KEGG:spo:SPAC22F3.08c OMA:ERESINT OrthoDB:EOG425926
NextBio:20802875 Uniprot:Q09775
Length = 481
Score = 125 (49.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 30/138 (21%), Positives = 65/138 (47%)
Query: 482 RDRDTDRSFERTDLLNKPAERLSMLQEPLEDG----LTIIYVPTRKETLSIAKYLCGFGV 537
+D TD +R + ++ +L++ + +G +I+V + ++ L +
Sbjct: 254 KDAATDSIDQRLLFVGSDTSKIVILRQMISNGELKPRVVIFVQDIERAKALYTELLFDEI 313
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
+ LP+++ +F + ++ V++AT GID V+ +I++ +PQS+ +Y
Sbjct: 314 HVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYI 373
Query: 598 QEAGRAGRDGHLADCVLY 615
GR GR G+ V +
Sbjct: 374 HRIGRTGRAGNTGQAVTF 391
Score = 96 (38.9 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 37/142 (26%), Positives = 64/142 (45%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT-------GKVVV 217
LKK + Q+ A+ + D L A TGSGK++ + P L G +
Sbjct: 61 LKKQ-NITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAI 119
Query: 218 VISP---LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKA--LRGMYSIIYVCPETVI 272
+++P L ++ Q KLS G + + + + K+++KA LR Y + C T +
Sbjct: 120 IVAPTRELCEQIYRQAEKLS-FGTSLKIIELSKSNEKIQEKAPKLREKYDM---CIGTPM 175
Query: 273 RLIKPLQRLAESRGIALFAIDE 294
RL++ +Q + F +DE
Sbjct: 176 RLVQAIQTGLSFEKVEFFVMDE 197
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 131 (51.2 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 36/118 (30%), Positives = 55/118 (46%)
Query: 490 FERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKS 549
F + D L K E S L E +D +++ T++ I YL G A A + ++
Sbjct: 356 FSKRDRLVKHLE--SALNE--KDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQN 411
Query: 550 QLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607
+ V EF + K ++VAT GID + +I+Y P ++E Y GR GR G
Sbjct: 412 ERDWVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGG 469
Score = 91 (37.1 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 38/144 (26%), Positives = 63/144 (43%)
Query: 186 LAHHDCLVLAATGSGKSLCFQIPALL-----------TGKVVVVISPLISL---MHDQCS 231
L+ D + +AATGSGK+L + +P+++ G +V+V++P L + +CS
Sbjct: 162 LSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGDGPIVLVLAPTRELAVQIQTECS 221
Query: 232 KLSKHGV--TACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR-LAESRGIA 288
K K C G G P + RG + +C T RLI L+ + +
Sbjct: 222 KFGKSSRIRNTCVYG-GAPKGPQIRDLARG----VEICIATPGRLIDMLEAGKTNLKRVT 276
Query: 289 LFAIDEVHCVSKWGHDFRPDYRRL 312
+DE + G F P R++
Sbjct: 277 YLVLDEADRMLDMG--FEPQIRKI 298
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 167 (63.8 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 36/124 (29%), Positives = 62/124 (50%)
Query: 501 ERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE 560
E ++ L E E +I++V TR++T +A +LC G KAAA + +P+S R +
Sbjct: 254 EAMARLLETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQ 313
Query: 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
++++VAT G+D + + +Y P +E+Y GR GR G +L +
Sbjct: 314 GVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQ 373
Query: 621 MPTL 624
+ L
Sbjct: 374 IRML 377
Score = 57 (25.1 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
G S Q A+ L D L A TG+GK+ F +P L
Sbjct: 45 GFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85
Score = 38 (18.4 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 323 NLKSLKFDIPLMALTATATIQVREDILKSLHMS-KGTK 359
NL K +MA T IQV +I K+L + KG K
Sbjct: 89 NLSQYKPQAIVMAPTRELAIQVAAEI-KNLGQNIKGLK 125
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 167 (63.8 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 36/124 (29%), Positives = 62/124 (50%)
Query: 501 ERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE 560
E ++ L E E +I++V TR++T +A +LC G KAAA + +P+S R +
Sbjct: 254 EAMARLLETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQ 313
Query: 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
++++VAT G+D + + +Y P +E+Y GR GR G +L +
Sbjct: 314 GVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQ 373
Query: 621 MPTL 624
+ L
Sbjct: 374 IRML 377
Score = 57 (25.1 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
G S Q A+ L D L A TG+GK+ F +P L
Sbjct: 45 GFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85
Score = 38 (18.4 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 323 NLKSLKFDIPLMALTATATIQVREDILKSLHMS-KGTK 359
NL K +MA T IQV +I K+L + KG K
Sbjct: 89 NLSQYKPQAIVMAPTRELAIQVAAEI-KNLGQNIKGLK 125
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 129 (50.5 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 30/115 (26%), Positives = 54/115 (46%)
Query: 501 ERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE 560
E L E + II+V T+ TL +A+ L G +AA N + ++ + +
Sbjct: 234 EALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293
Query: 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
+L++++AT G+D + +++Y P E+Y GR GR G +L+
Sbjct: 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF 348
Score = 91 (37.1 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 42/141 (29%), Positives = 64/141 (45%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL------LTGKVVVVISPLI 223
G+ Q E + L D L +A TGSGK+ F +P L L ++V++P
Sbjct: 25 GYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTR 84
Query: 224 SL---MHDQCSKLSKH--GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
L + + + SKH GV L GQ + V+ +ALR I+ P RL+ L
Sbjct: 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD-VQLRALRQGPQIVVGTPG---RLLDHL 140
Query: 279 QR----LAESRGIALFAIDEV 295
+R L++ G+ L DE+
Sbjct: 141 KRGTLDLSKLSGLVLDEADEM 161
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 108 (43.1 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 26/106 (24%), Positives = 48/106 (45%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I++V TR S+ L G+ A + + + + + F + ++ V++AT G
Sbjct: 249 IVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLATDVAARG 308
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621
ID ++ +I++ P+S + Y GR GR G + A M
Sbjct: 309 IDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDM 354
Score = 108 (43.1 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 43/148 (29%), Positives = 69/148 (46%)
Query: 163 SLLK--KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---------L 211
SLL+ K GH S Q+E L L D L A TG+GK+ F +PAL
Sbjct: 11 SLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRY 70
Query: 212 TGKV-VVVISP---LISLMHDQ-CSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYV 266
+G+ V++++P L S +H C + G+ + G P +++AL+G I+
Sbjct: 71 SGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVP-YAPQEEALKGNIDILVA 129
Query: 267 CPETVIRLIKPLQRLAESRGIALFAIDE 294
P ++ + + AES + + IDE
Sbjct: 130 TPGRLMEYLDKGKFSAES--VDILIIDE 155
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 108 (43.1 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 26/106 (24%), Positives = 48/106 (45%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I++V TR S+ L G+ A + + + + + F + ++ V++AT G
Sbjct: 249 IVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLATDVAARG 308
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621
ID ++ +I++ P+S + Y GR GR G + A M
Sbjct: 309 IDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDM 354
Score = 108 (43.1 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 43/148 (29%), Positives = 69/148 (46%)
Query: 163 SLLK--KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---------L 211
SLL+ K GH S Q+E L L D L A TG+GK+ F +PAL
Sbjct: 11 SLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRY 70
Query: 212 TGKV-VVVISP---LISLMHDQ-CSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYV 266
+G+ V++++P L S +H C + G+ + G P +++AL+G I+
Sbjct: 71 SGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVP-YAPQEEALKGNIDILVA 129
Query: 267 CPETVIRLIKPLQRLAESRGIALFAIDE 294
P ++ + + AES + + IDE
Sbjct: 130 TPGRLMEYLDKGKFSAES--VDILIIDE 155
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 147 (56.8 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 41/168 (24%), Positives = 82/168 (48%)
Query: 453 KEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLED 512
+ ++ EFL+++ + VA G+ G RD ++ + +K E+L + + D
Sbjct: 469 QRLAAEFLKSNYLF---VAVGQVGGAC----RDVQQTVLQVGQFSK-REKLVEILRNIGD 520
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
T+++V T+K+ IA +LC + + + + + + +F K V+VAT
Sbjct: 521 ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVA 580
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
G+D NV+ +I++ P +++ Y GR GR G+ + + +L S
Sbjct: 581 ARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 628
Score = 73 (30.8 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
N++ K G++ L QK ++ LA D + A TGSGK+ F +P L
Sbjct: 281 NNIAKA--GYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 327
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 147 (56.8 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 41/168 (24%), Positives = 82/168 (48%)
Query: 453 KEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLED 512
+ ++ EFL+++ + VA G+ G RD ++ + +K E+L + + D
Sbjct: 489 QRLAAEFLKSNYLF---VAVGQVGGAC----RDVQQTVLQVGQFSK-REKLVEILRNIGD 540
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
T+++V T+K+ IA +LC + + + + + + +F K V+VAT
Sbjct: 541 ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVA 600
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
G+D NV+ +I++ P +++ Y GR GR G+ + + +L S
Sbjct: 601 ARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 648
Score = 73 (30.8 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
N++ K G++ L QK ++ LA D + A TGSGK+ F +P L
Sbjct: 301 NNIAKA--GYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 347
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 148 (57.2 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 37/110 (33%), Positives = 57/110 (51%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
K + LS+L+ D L I++V T++ TL +A L G KAAA N + ++Q RV
Sbjct: 232 KTSAVLSLLEVEDFDAL-IMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDS 290
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607
+ +L++VVAT G+D + + + P E+Y GR GR G
Sbjct: 291 LKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
Score = 68 (29.0 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
G+ Q++++ LA HD + A TG+GK+ F +P L
Sbjct: 25 GYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPIL 65
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 146 (56.5 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 41/168 (24%), Positives = 83/168 (49%)
Query: 453 KEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLED 512
+ ++ EFL+++ + VA G+ G RD ++ + +K + L +L+ + D
Sbjct: 487 QRLAAEFLKSNYLF---VAVGQVGGAC----RDVQQADLQVGQYSKREKLLEILRN-IGD 538
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
T+++V T+K+ IA +LC + + + + + + +F K V+VAT
Sbjct: 539 ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVA 598
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
G+D NV+ +I++ P +++ Y GR GR G+ + + +L S
Sbjct: 599 ARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 646
Score = 73 (30.8 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
N++ K G++ L QK ++ LA D + A TGSGK+ F +P L
Sbjct: 299 NNIAKA--GYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 345
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 146 (56.5 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 41/168 (24%), Positives = 82/168 (48%)
Query: 453 KEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLED 512
+ ++ EFL+++ + VA G+ G RD ++ + +K E+L + + D
Sbjct: 490 QRLAAEFLKSNYLF---VAVGQVGGAC----RDVQQTVLQVGQFSK-REKLVEILRNIGD 541
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
T+++V T+K+ IA +LC + + + + + + +F K V+VAT
Sbjct: 542 ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVA 601
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
G+D NV+ +I++ P +++ Y GR GR G+ + + +L S
Sbjct: 602 ARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 649
Score = 73 (30.8 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
N++ K G++ L QK ++ LA D + A TGSGK+ F +P L
Sbjct: 302 NNIAKA--GYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 348
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 135 (52.6 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 45/156 (28%), Positives = 72/156 (46%)
Query: 453 KEMSVEFLENDSVDDWDVACGEFYG-HSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLE 511
K+++ ++L ND + V E H+ + + FE+ D LNK E S Q+
Sbjct: 306 KQLAADYL-NDPIQV-QVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETAS--QD--N 359
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+ T+I+ T++ I KYL G A A + + + V EF + ++VAT
Sbjct: 360 EYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDV 419
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607
GID + +I+Y P ++E Y GR GR G
Sbjct: 420 AARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAG 455
Score = 81 (33.6 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 36/143 (25%), Positives = 65/143 (45%)
Query: 186 LAHHDCLVLAATGSGKSLCFQIPALL-----------TGKVVVVISPLISL---MHDQCS 231
L+ D + +AATGSGK+L + +P ++ G +V+V++P L + +CS
Sbjct: 148 LSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECS 207
Query: 232 KL--SKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIAL 289
K S C G G P ++ + RG I+ P +I +++ + + R +
Sbjct: 208 KFGHSSRIRNTCVYG-GVPKSQQIRDLSRGS-EIVIATPGRLIDMLE-IGKTNLKR-VTY 263
Query: 290 FAIDEVHCVSKWGHDFRPDYRRL 312
+DE + G F P R++
Sbjct: 264 LVLDEADRMLDMG--FEPQIRKI 284
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 116 (45.9 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 40/154 (25%), Positives = 66/154 (42%)
Query: 457 VEFLENDSVDDW-DVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLED--G 513
V+ L D ++D+ V G + H + E D +K A ++E L+D
Sbjct: 314 VQRLARDYLNDYIQVTVGSLDLAASHNIKQI---VEVVDNADKRARLGKDIEEVLKDRDN 370
Query: 514 LTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFG 573
+I+ T++ I ++L G A A + + + V EF K ++VAT
Sbjct: 371 KVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVAS 430
Query: 574 MGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607
GID + + +Y +P + E Y GR GR G
Sbjct: 431 RGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAG 464
Score = 100 (40.3 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 43/170 (25%), Positives = 74/170 (43%)
Query: 162 NSLLK--KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-------- 211
N +LK K G + Q++A ++ D + ++ATGSGK+L + +PA++
Sbjct: 131 NYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLL 190
Query: 212 ---TGKVVVVISPLISL---MHDQCSKLSKHGV--TACFLGSGQPDNKVEQKALRGMYSI 263
G +V+V++P L + +C+K K C G G P + +RG
Sbjct: 191 SPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYG-GVPRGPQIRDLIRG---- 245
Query: 264 IYVCPETVIRLIKPLQ-RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312
+ +C T RL+ L R + +DE + G F P R++
Sbjct: 246 VEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMG--FEPQIRKI 293
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 131 (51.2 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
Identities = 33/105 (31%), Positives = 52/105 (49%)
Query: 504 SMLQEPLEDG-LTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
S+LQ +D I++V T+K I K L G+ A + + + R V EF K
Sbjct: 351 SLLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGK 410
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607
+++AT G+D NV+ +I++ +P +E Y GR GR G
Sbjct: 411 SPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAG 455
Score = 83 (34.3 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
Identities = 42/172 (24%), Positives = 71/172 (41%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEA-----LSAW---LAHHDCLVLAATGSGKSLCFQIPAL 210
V +N + + SLKN A + W L+ D + A TGSGK+L F +PA
Sbjct: 113 VSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAF 172
Query: 211 L-----------TGKVVVVISP---LISLMHDQCSKLSKHGV--TACFLGSGQPDNKVEQ 254
+ G +V+V++P L + +C K S C G G P +
Sbjct: 173 VHILAQPNLKYGDGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYG-GVPKSGQIY 231
Query: 255 KALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFR 306
+G++ I+ CP +I L++ Q + + +DE + G + +
Sbjct: 232 ALKQGVH-ILIACPGRLIDLLE--QNVTNLMRVTYLVLDEADKMLDMGFELQ 280
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 131 (51.2 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
Identities = 33/105 (31%), Positives = 52/105 (49%)
Query: 504 SMLQEPLEDG-LTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
S+LQ +D I++V T+K I K L G+ A + + + R V EF K
Sbjct: 351 SLLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGK 410
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607
+++AT G+D NV+ +I++ +P +E Y GR GR G
Sbjct: 411 SPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAG 455
Score = 83 (34.3 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
Identities = 42/172 (24%), Positives = 71/172 (41%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEA-----LSAW---LAHHDCLVLAATGSGKSLCFQIPAL 210
V +N + + SLKN A + W L+ D + A TGSGK+L F +PA
Sbjct: 113 VSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAF 172
Query: 211 L-----------TGKVVVVISP---LISLMHDQCSKLSKHGV--TACFLGSGQPDNKVEQ 254
+ G +V+V++P L + +C K S C G G P +
Sbjct: 173 VHILAQPNLKYGDGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYG-GVPKSGQIY 231
Query: 255 KALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFR 306
+G++ I+ CP +I L++ Q + + +DE + G + +
Sbjct: 232 ALKQGVH-ILIACPGRLIDLLE--QNVTNLMRVTYLVLDEADKMLDMGFELQ 280
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 139 (54.0 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 36/133 (27%), Positives = 63/133 (47%)
Query: 487 DRSFERTDLLNKPAERLSMLQEPLEDGL----TIIYVPTRKETLSIAKYLCGFGVKAAAY 542
DR +R ++++ +++ ++E LE II+V ++ +IAK L G A
Sbjct: 487 DRVEQRVEMISDDSKKWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTL 546
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+ S + Q R + +++VAT G GID NV +++Y +S+E Y GR
Sbjct: 547 HGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGR 606
Query: 603 AGRDGHLADCVLY 615
GR G + +
Sbjct: 607 TGRAGKSGTAITF 619
Score = 76 (31.8 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 28/96 (29%), Positives = 43/96 (44%)
Query: 133 DCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCL 192
D N+ + D L E G E+ +LKK + + Q+ A+ L D +
Sbjct: 234 DYNISIKGDDLPNPLRNWEEAGLPSEML--KVLKK-VNYKEPSSIQRAAIPVLLQRKDLI 290
Query: 193 VLAATGSGKSLCFQIPALLTGKVVVVISPLI-SLMH 227
+A TGSGK+ F IP ++ + + PL S MH
Sbjct: 291 GIAETGSGKTAAFIIPLIIA---ISKLPPLTESNMH 323
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 141 (54.7 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 41/168 (24%), Positives = 81/168 (48%)
Query: 453 KEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLED 512
+ ++ EFL+++ + VA G+ G RD +S + +K E+L + + D
Sbjct: 463 QRLAGEFLKSNYLF---VAVGQVGGAC----RDVQQSILQVGQYSK-REKLVEILRNIGD 514
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
T+++V T+K+ IA +LC + + + + + + +F K V+VAT
Sbjct: 515 ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVA 574
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
G+D NV+ +I++ P +++ Y GR GR G+ + + + S
Sbjct: 575 ARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTES 622
Score = 73 (30.8 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
N++ K G++ L QK ++ LA D + A TGSGK+ F +P L
Sbjct: 275 NNIAKA--GYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPIL 321
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 129 (50.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 33/107 (30%), Positives = 54/107 (50%)
Query: 502 RLSMLQEPLEDGLTI-IYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE 560
RL L + L DG I I+V T++ + + L G A A + +S+ RV EF
Sbjct: 399 RLLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKS 458
Query: 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607
+ ++ AT G+D +++ +++Y +P +LE Y GR GR G
Sbjct: 459 GRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAG 505
Score = 83 (34.3 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 44/183 (24%), Positives = 78/183 (42%)
Query: 148 PKEVEIGSDWEVKVNSL--LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCF 205
PK +++ D N L + K G + Q + L D + +A TGSGK+L +
Sbjct: 161 PKPMKMFQDANFPDNILEAIAK-LGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 219
Query: 206 QIPALL-----------TGKVVVVISPLISL---MHDQCSKLS-KHGV-TACFLGSGQPD 249
+PAL+ G +V++++P L + ++ K + GV + C G G P
Sbjct: 220 LLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYG-GAPK 278
Query: 250 NKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDY 309
+ RG+ I+ P +I +++ Q R + +DE + G F P
Sbjct: 279 GPQIRDLRRGV-EIVIATPGRLIDMLE-CQHTNLKR-VTYLVLDEADRMLDMG--FEPQI 333
Query: 310 RRL 312
R++
Sbjct: 334 RKI 336
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 137 (53.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 31/115 (26%), Positives = 53/115 (46%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +L +D LT+++V T+K S+ +L G + + + +F K
Sbjct: 432 LDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
++VAT G+D NV+ +I++ P +E Y GR GR G+L + N
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN 546
Score = 75 (31.5 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 45/188 (23%), Positives = 72/188 (38%)
Query: 35 SFNDAIEYILNGSVRNSKGKSVSWSSKCVTENGKTLGKRTLSSANSLGQMRQASLLDHFQ 94
S D Y GS +S+GKS +S + G+ R S + +G S F+
Sbjct: 62 SSKDKDAYSSFGSRSDSRGKSSFFSDRGSGSRGR-FDDRGRSDYDGIGSRGDRSGFGKFE 120
Query: 95 SGNRQKRGKRNXXXXXXXXXXXXXXXIVEEQKESYPGMDCNLKAES-DSLAV-----SCP 148
G + ++ EQ E + G + + E D + V +CP
Sbjct: 121 RGGNSRWCDKSDEDDWSKPLPPSERL---EQ-ELFSGGNTGINFEKYDDIPVEATGNNCP 176
Query: 149 KEVEIGSDWEVKVNSLLKKHFGHSSLKNF------QKEALSAWLAHHDCLVLAATGSGKS 202
+E SD V++ ++ G+ L + QK A+ D + A TGSGK+
Sbjct: 177 PHIESFSD--VEMGEII---MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 231
Query: 203 LCFQIPAL 210
F +P L
Sbjct: 232 AAFLLPIL 239
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 137 (53.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 31/115 (26%), Positives = 53/115 (46%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +L +D LT+++V T+K S+ +L G + + + +F K
Sbjct: 432 LDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
++VAT G+D NV+ +I++ P +E Y GR GR G+L + N
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN 546
Score = 75 (31.5 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 45/188 (23%), Positives = 72/188 (38%)
Query: 35 SFNDAIEYILNGSVRNSKGKSVSWSSKCVTENGKTLGKRTLSSANSLGQMRQASLLDHFQ 94
S D Y GS +S+GKS +S + G+ R S + +G S F+
Sbjct: 62 SSKDKDAYSSFGSRSDSRGKSSFFSDRGSGSRGR-FDDRGRSDYDGIGSRGDRSGFGKFE 120
Query: 95 SGNRQKRGKRNXXXXXXXXXXXXXXXIVEEQKESYPGMDCNLKAES-DSLAV-----SCP 148
G + ++ EQ E + G + + E D + V +CP
Sbjct: 121 RGGNSRWCDKSDEDDWSKPLPPSERL---EQ-ELFSGGNTGINFEKYDDIPVEATGNNCP 176
Query: 149 KEVEIGSDWEVKVNSLLKKHFGHSSLKNF------QKEALSAWLAHHDCLVLAATGSGKS 202
+E SD V++ ++ G+ L + QK A+ D + A TGSGK+
Sbjct: 177 PHIESFSD--VEMGEII---MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 231
Query: 203 LCFQIPAL 210
F +P L
Sbjct: 232 AAFLLPIL 239
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 118 (46.6 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 33/121 (27%), Positives = 57/121 (47%)
Query: 491 ERTDLLNKPAERLSMLQE----PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASL 546
E D K + L +L++ P ++ +I+ +KE + + L G AA + L
Sbjct: 334 EVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDL 393
Query: 547 PKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRD 606
+ Q + EF K +++AT G+D NV+ +I+ +P ++E Y GR GR
Sbjct: 394 SQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRA 453
Query: 607 G 607
G
Sbjct: 454 G 454
Score = 92 (37.4 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 53/191 (27%), Positives = 87/191 (45%)
Query: 184 AW---LAHHDCLVLAATGSGKSLCFQIPALL--------TGKVVVVISP---LISLMHDQ 229
AW L+ D + +A TGSGK+ F +PA+ G V+VISP L S ++D
Sbjct: 142 AWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDN 201
Query: 230 CSKLS-KHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288
L+ K G+ C + G P K EQ+ ++ P ++ L++ + + +
Sbjct: 202 LIVLTDKVGMQCCCVYGGVP--KDEQRIQLKKSQVVVATPGRLLDLLQ--EGSVDLSQVN 257
Query: 289 LFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDI 348
+DE + + G F D + +++RE A+ ++L F TAT +VRE
Sbjct: 258 YLVLDEADRMLEKG--FEEDIK--NIIRET-DASKRQTLMF-------TATWPKEVRE-- 303
Query: 349 LKSLHMSKGTK 359
L S M+ K
Sbjct: 304 LASTFMNNPIK 314
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 124 (48.7 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 35/137 (25%), Positives = 60/137 (43%)
Query: 477 GHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG 536
G H+D + F D L+ L + E II+ TR +T + + L
Sbjct: 217 GSEEHKD--ITQHFYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNN 274
Query: 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAY 596
+KA A + +L ++Q + +F +++V T G+D V +I++ P+ E Y
Sbjct: 275 LKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEY 334
Query: 597 YQEAGRAGRDGHLADCV 613
GR GR G+ D +
Sbjct: 335 VHRVGRTGRAGNKGDAM 351
Score = 83 (34.3 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 162 NSLLKK--HFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
N LLK H+ Q++A+ +A D L + TGSGK+L F +P L
Sbjct: 14 NRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 124 (48.7 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 35/137 (25%), Positives = 60/137 (43%)
Query: 477 GHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG 536
G H+D + F D L+ L + E II+ TR +T + + L
Sbjct: 217 GSEEHKD--ITQHFYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNN 274
Query: 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAY 596
+KA A + +L ++Q + +F +++V T G+D V +I++ P+ E Y
Sbjct: 275 LKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEY 334
Query: 597 YQEAGRAGRDGHLADCV 613
GR GR G+ D +
Sbjct: 335 VHRVGRTGRAGNKGDAM 351
Score = 83 (34.3 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 162 NSLLKK--HFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
N LLK H+ Q++A+ +A D L + TGSGK+L F +P L
Sbjct: 14 NRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 121 (47.7 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 41/128 (32%), Positives = 65/128 (50%)
Query: 487 DRSFERTDLLNKPAERLSMLQEPL---EDGLTII-YVPTRKETLSIAKYLCG-FGVKAAA 541
++S +T + P E+ S L++ L E G II + T++ +A+ L FG AAA
Sbjct: 445 NKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCSTKRMCDQLARNLTRTFG--AAA 502
Query: 542 YNASLPKSQLRR--VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599
+ KSQ R V +F + V+VAT G+D ++R +++Y +P +E Y
Sbjct: 503 IHGD--KSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHR 560
Query: 600 AGRAGRDG 607
GR GR G
Sbjct: 561 IGRTGRAG 568
Score = 90 (36.7 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 39/180 (21%), Positives = 77/180 (42%)
Query: 147 CPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ 206
CP S + N + G S+ Q ++ + + D + +A TGSGK+L +
Sbjct: 225 CPPAAGFNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYL 284
Query: 207 IPALL----------TGKVVVVISP---LISLMHDQCSKLSKHGVTACF-LGSGQPDNKV 252
IP + G ++V+SP L + + + K K +C L G P
Sbjct: 285 IPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQ 344
Query: 253 EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312
++ RG+ I+ P + +++ ++R++ + ++ +DE + G F P R++
Sbjct: 345 LKEIERGV-DIVVATPGRLNDILE-MKRISLHQ-VSYLVLDEADRMLDMG--FEPQIRKI 399
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 112 (44.5 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 48/185 (25%), Positives = 82/185 (44%)
Query: 147 CPKEVE--IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLC 204
CPK ++ + +K+ + LKKH G+ Q +A+ A + D + +A TGSGK++
Sbjct: 366 CPKPIKTWVQCGISMKILTALKKH-GYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIA 424
Query: 205 FQIP---------ALLTGK--VVVVISPLISL---MHDQCSKLSKH-GV-TACFLGSGQP 248
F +P AL G+ + V+++P L + +C K SK G+ C G
Sbjct: 425 FLLPMFRHIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGI 484
Query: 249 DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ-RLAESRGIALFAIDEVHCVSKWGHDFRP 307
++ + RG II P +I ++ R+ R + +DE + G F P
Sbjct: 485 SEQIAELK-RGA-EIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMG--FEP 540
Query: 308 DYRRL 312
R+
Sbjct: 541 QVMRI 545
Score = 103 (41.3 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 27/112 (24%), Positives = 48/112 (42%)
Query: 497 NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHT 556
NK + L +L E G II+V ++ + K L + + + + +
Sbjct: 603 NKFLKLLELLGHYQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIIN 662
Query: 557 EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGH 608
+F +++VAT G+D + +++Y P E Y AGR GR G+
Sbjct: 663 DFKNGTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGN 714
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 137 (53.3 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 33/137 (24%), Positives = 66/137 (48%)
Query: 484 RDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYN 543
RD ++ + +K E+L + + D T+++V T+K+ IA +LC + + +
Sbjct: 486 RDVQQTILQVGQYSK-REKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIH 544
Query: 544 ASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRA 603
+ + + +F K V+VAT G+D NV+ +I++ P +++ Y GR
Sbjct: 545 GDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRT 604
Query: 604 GRDGHLADCVLYANLSS 620
GR G+ + + + S
Sbjct: 605 GRCGNTGRAISFFDTDS 621
Score = 73 (30.8 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
N++ K G++ L QK ++ LA D + A TGSGK+ F +P L
Sbjct: 274 NNIAKA--GYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPIL 320
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 109 (43.4 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 51/199 (25%), Positives = 86/199 (43%)
Query: 135 NLKAESDSLAV---SCPKEVEIGSDWEVKVNSL-LKKHFGHSSLKNFQKEALSAWLAHHD 190
NL+ E D + V PK V+ S + + +L + G +SL + Q +A+ A ++ D
Sbjct: 521 NLRLELDGIKVRGLDVPKPVQKWSQCGLGIQTLDVIDKLGFASLTSIQAQAIPAIMSGRD 580
Query: 191 CLVLAATGSGKSLCFQIPAL-----------LTGKVVVVISP---LISLMHDQCSKLSKH 236
+ +A TGSGK++ F IP + G + ++++P L + +H C K
Sbjct: 581 VIGVAKTGSGKTMAFLIPMFRHIKDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKA 640
Query: 237 -GVTA-CFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKP-LQRLAESRGIALFAID 293
+ A C G G P + RG II P +I L+ R+ R + +D
Sbjct: 641 LNLRAVCAYG-GAPIKDQIAELKRGA-EIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLD 698
Query: 294 EVHCVSKWGHDFRPDYRRL 312
E + G F P ++
Sbjct: 699 EADRMFDMG--FEPQVMKI 715
Score = 107 (42.7 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 34/141 (24%), Positives = 62/141 (43%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHT--EFHENKLEVVVA 568
ED ++I+V ++ ++ + L G + + K Q+ R T +F V++A
Sbjct: 792 EDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGG--KDQIDRDSTIEDFKAGIFPVLIA 849
Query: 569 TIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS----SMPTL 624
T G+D ++ +++Y P LE Y AGR GR G+ V + S+
Sbjct: 850 TSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIA 909
Query: 625 LPSRRSEDQTKQAYRMLSDCF 645
++S + +A + L D F
Sbjct: 910 KALKQSGQEVPEAVQKLVDSF 930
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 141 (54.7 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 37/107 (34%), Positives = 53/107 (49%)
Query: 502 RLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHE 560
RL L + L + I++V T+K SIAK L G + + + Q R + E F
Sbjct: 566 RLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQ-REISLEGFRA 624
Query: 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607
+ V+VAT G GID +V +I+Y P+ +E Y GR GR G
Sbjct: 625 KRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAG 671
Score = 69 (29.3 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 157 WEV-KVNS-LLK--KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
WE K+ S LLK + G+ Q A+ L D + +A TGSGK+ F +P L
Sbjct: 315 WEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPML 372
Score = 48 (22.0 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 17/68 (25%), Positives = 28/68 (41%)
Query: 442 DDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAE 501
+ EDV N ++ + + D + D G RDRD DR +R ++ +
Sbjct: 61 ETEDVSNGDTNRDKDRD-RDRDRDRERDRDRERDRGRDRDRDRDRDRDRDRERERDRERD 119
Query: 502 RLSMLQEP 509
R +EP
Sbjct: 120 RRERDREP 127
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 137 (53.3 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 39/163 (23%), Positives = 79/163 (48%)
Query: 453 KEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLED 512
+ ++ EFL+++ + VA G+ G RD ++ + +K E+L + + D
Sbjct: 490 QRLAGEFLKSNYLF---VAVGQVGGAC----RDVQQTILQVGQYSK-REKLVEILRSIGD 541
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
T+++V T+K+ IA +LC + + + + + + +F K V+VAT
Sbjct: 542 ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVA 601
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
G+D NV+ +I++ P +++ Y GR GR G+ + +
Sbjct: 602 ARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISF 644
Score = 73 (30.8 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
N++ K G++ L QK ++ LA D + A TGSGK+ F +P L
Sbjct: 302 NNIAKA--GYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 348
>UNIPROTKB|J3KRM6 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000582464
Uniprot:J3KRM6
Length = 118
Score = 135 (52.6 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
FGMG+DK NVR + H+ +S+ YYQE+GRAGRDG + C LY
Sbjct: 2 FGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLY 45
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 140 (54.3 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 35/125 (28%), Positives = 57/125 (45%)
Query: 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
D R E TD A R M ++ + L +I+ T+ + L G G A
Sbjct: 217 DTIEQRVIETTDRAKPDALRFVMDRD--QPFLAVIFCRTKVRASKLYDNLKGLGYNCAEL 274
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+ +P+++ RV F E K++ ++AT G+D V + +Y P+ +E+Y GR
Sbjct: 275 HGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGR 334
Query: 603 AGRDG 607
GR G
Sbjct: 335 TGRAG 339
Score = 63 (27.2 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
N L+++ G + Q++A+ L+ D + A TG+GK+L F +P L
Sbjct: 17 NHTLREN-GITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 140 (54.3 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 35/125 (28%), Positives = 57/125 (45%)
Query: 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
D R E TD A R M ++ + L +I+ T+ + L G G A
Sbjct: 217 DTIEQRVIETTDRAKPDALRFVMDRD--QPFLAVIFCRTKVRASKLYDNLKGLGYNCAEL 274
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+ +P+++ RV F E K++ ++AT G+D V + +Y P+ +E+Y GR
Sbjct: 275 HGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGR 334
Query: 603 AGRDG 607
GR G
Sbjct: 335 TGRAG 339
Score = 63 (27.2 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
N L+++ G + Q++A+ L+ D + A TG+GK+L F +P L
Sbjct: 17 NHTLREN-GITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 133 (51.9 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 29/107 (27%), Positives = 50/107 (46%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+D LT+++V T+K S+ +L G + + + +F K ++VAT
Sbjct: 484 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 543
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
G+D NV+ +I++ P +E Y GR GR G+L + N
Sbjct: 544 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN 590
Score = 75 (31.5 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 45/188 (23%), Positives = 72/188 (38%)
Query: 35 SFNDAIEYILNGSVRNSKGKSVSWSSKCVTENGKTLGKRTLSSANSLGQMRQASLLDHFQ 94
S D Y GS +S+GKS +S + G+ R S + +G S F+
Sbjct: 104 SSKDKDAYSSFGSRSDSRGKSSFFSDRGSGSRGR-FDDRGRSDYDGIGSRGDRSGFGKFE 162
Query: 95 SGNRQKRGKRNXXXXXXXXXXXXXXXIVEEQKESYPGMDCNLKAES-DSLAV-----SCP 148
G + ++ EQ E + G + + E D + V +CP
Sbjct: 163 RGGNSRWCDKSDEDDWSKPLPPSERL---EQ-ELFSGGNTGINFEKYDDIPVEATGNNCP 218
Query: 149 KEVEIGSDWEVKVNSLLKKHFGHSSLKNF------QKEALSAWLAHHDCLVLAATGSGKS 202
+E SD V++ ++ G+ L + QK A+ D + A TGSGK+
Sbjct: 219 PHIESFSD--VEMGEII---MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 273
Query: 203 LCFQIPAL 210
F +P L
Sbjct: 274 AAFLLPIL 281
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 143 (55.4 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 35/126 (27%), Positives = 58/126 (46%)
Query: 496 LNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH 555
L+K + L +L D LT+++V T+K S+ +L G + + +
Sbjct: 420 LDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 479
Query: 556 TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
+F K ++VAT G+D NVR +I++ P +E Y GR GR G+L +
Sbjct: 480 HQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 539
Query: 616 ANLSSM 621
N +M
Sbjct: 540 FNEKNM 545
Score = 63 (27.2 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 25/98 (25%), Positives = 43/98 (43%)
Query: 125 QKESYPGMDCNLKAES-DSLAV-----SCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNF- 177
++E + G + + E D + V +CP +E SD + + ++ G+ L +
Sbjct: 142 EQELFSGGNTGINFEKYDDIPVEATGSNCPPHIENFSD--IDMGEII---MGNIELTRYT 196
Query: 178 -----QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
QK A+ D + A TGSGK+ F +P L
Sbjct: 197 RPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPIL 234
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 143 (55.4 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 35/126 (27%), Positives = 58/126 (46%)
Query: 496 LNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH 555
L+K + L +L D LT+++V T+K S+ +L G + + +
Sbjct: 423 LDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 482
Query: 556 TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
+F K ++VAT G+D NVR +I++ P +E Y GR GR G+L +
Sbjct: 483 HQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 542
Query: 616 ANLSSM 621
N +M
Sbjct: 543 FNEKNM 548
Score = 63 (27.2 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 25/98 (25%), Positives = 43/98 (43%)
Query: 125 QKESYPGMDCNLKAES-DSLAV-----SCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNF- 177
++E + G + + E D + V +CP +E SD + + ++ G+ L +
Sbjct: 145 EQELFSGGNTGINFEKYDDIPVEATGSNCPPHIENFSD--IDMGEII---MGNIELTRYT 199
Query: 178 -----QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
QK A+ D + A TGSGK+ F +P L
Sbjct: 200 RPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPIL 237
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 142 (55.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 36/105 (34%), Positives = 51/105 (48%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L + E +E II+V TR +T+ IA+ L G A A N L ++Q R + K
Sbjct: 245 LERIAEVVEYDAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGK 304
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607
++VAT G+D + +I+Y P EAY GR GR G
Sbjct: 305 SSILVATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAG 349
Score = 63 (27.2 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
G +S + Q + LA D L A TG+GK+ F +PAL
Sbjct: 34 GFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPAL 74
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 137 (53.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 31/115 (26%), Positives = 53/115 (46%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +L +D LT+++V T+K S+ +L G + + + +F K
Sbjct: 432 LDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
++VAT G+D NV+ +I++ P +E Y GR GR G+L + N
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN 546
Score = 69 (29.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 45/194 (23%), Positives = 75/194 (38%)
Query: 30 ETVGPSFN-DAIEYILNGSVRNSKGKSVSWSSKCVTENGKTLGKRTLSSANSLGQMRQAS 88
++ G S N D Y GS +S+GKS +S + G+ R S + +G
Sbjct: 56 DSSGWSSNKDKDAYSSFGSRNDSRGKSSFFSDRGSGSRGR-FDDRGRSDYDGIGSRGDRG 114
Query: 89 LLDHFQSGNRQKRGKRNXXXXXXXXXXXXXXXIVEEQKESYPGMDCNLKAES-DSLAV-- 145
++ G + ++ EQ E + G + + E D + V
Sbjct: 115 GFGKYERGGNSRWCDKSDEDDWSKPLPPSERL---EQ-ELFSGGNTGINFEKYDDIPVEA 170
Query: 146 ---SCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNF------QKEALSAWLAHHDCLVLAA 196
+CP +E SD V++ ++ G+ L + QK A+ D + A
Sbjct: 171 TGNNCPPHIESFSD--VEMGEII---MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQ 225
Query: 197 TGSGKSLCFQIPAL 210
TGSGK+ F +P L
Sbjct: 226 TGSGKTAAFLLPIL 239
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 126 (49.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 40/131 (30%), Positives = 66/131 (50%)
Query: 483 DRDTDRSFER-TDLLNKPAE--RLSMLQEPLEDGLTI-IYVPTRKETLSIAKYLCGFGVK 538
D +R+ + D++++ + +L L E + DG I +++ T+K I + L G
Sbjct: 311 DLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWP 370
Query: 539 AAAYNASLPKSQLRR--VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAY 596
A + + KSQ R V +EF K ++ AT G+D +V+ +I+Y +P SLE Y
Sbjct: 371 ALSIHGD--KSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDY 428
Query: 597 YQEAGRAGRDG 607
GR GR G
Sbjct: 429 VHRIGRTGRAG 439
Score = 77 (32.2 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 37/162 (22%), Positives = 65/162 (40%)
Query: 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----------TGKV 215
K G + Q + + D + +A TGSGK+L + +PA++ G +
Sbjct: 115 KKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPI 174
Query: 216 VVVISPLISLMHDQCSKLSKHGV-----TACFLGSGQPDNKVEQKALRGMYSIIYVCPET 270
V+V++P L + SK G T C G G P + +G+ I+ P
Sbjct: 175 VLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYG-GVPKGPQVRDLQKGV-EIVIATPGR 232
Query: 271 VIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312
+I +++ R + +DE + G D P R++
Sbjct: 233 LIDMME--SNNTNLRRVTYLVLDEADRMLDMGFD--PQIRKI 270
>SGD|S000002319 [details] [associations]
symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
GermOnline:YDL160C Uniprot:P39517
Length = 506
Score = 120 (47.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 29/107 (27%), Positives = 51/107 (47%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L+ L L+ II+ + +AK + G +A + + + +V EF + K
Sbjct: 274 LNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK 333
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609
+ +V + GID V +I++ +P++ E Y GR+GR GHL
Sbjct: 334 VRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHL 380
Score = 83 (34.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 45/185 (24%), Positives = 81/185 (43%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK--------VVVVISPLISLMHDQ 229
Q+EA+ + D L A G+GK+ F IP L K +++V + ++L Q
Sbjct: 73 QEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQ 132
Query: 230 CSK-LSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288
+ L KH +C + +G + + + L I+ P V+ L +++A+ +
Sbjct: 133 VVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLAS--RKVADLSDCS 190
Query: 289 LFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDI 348
LF +DE DF+ ++ +F +SL F +AT + V+E +
Sbjct: 191 LFIMDEAD--KMLSRDFKTIIEQIL----SFLPPTHQSLLF-------SATFPLTVKEFM 237
Query: 349 LKSLH 353
+K LH
Sbjct: 238 VKHLH 242
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 143 (55.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 41/168 (24%), Positives = 82/168 (48%)
Query: 453 KEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLED 512
+ ++ EFL+++ + VA G+ G RD ++ + +K E+L + + D
Sbjct: 491 QRLAGEFLKSNYLF---VAVGQVGGAC----RDVQQTILQVGQYSK-REKLVEILRNIGD 542
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
T+++V T+K+ IA +LC + + + + + + +F K V+VAT
Sbjct: 543 ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVA 602
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
G+D NV+ +I++ P +++ Y GR GR G+ + + +L S
Sbjct: 603 ARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 650
Score = 63 (27.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
N++ K G++ L QK ++ D + A TGSGK+ F +P L
Sbjct: 303 NNIAKA--GYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPIL 349
Score = 41 (19.5 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 28/113 (24%), Positives = 46/113 (40%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCL--VLAAT---GSGKSLC--FQIP 208
DWE ++ +K H S + F+K+ S+ A+ D A++ G G S F
Sbjct: 5 DWEAEI---IKPHIS-SYVPVFEKDRYSSG-ANGDTFNRTPASSSEMGDGSSRRDHFMRS 59
Query: 209 ALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMY 261
+G+ + P S + S + GV F G +NK E+ G +
Sbjct: 60 GFASGRSLGNRDPGESNKRENTSTVGGFGVGKSFGNRGFSNNKFEEGDSSGFW 112
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 143 (55.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 41/168 (24%), Positives = 82/168 (48%)
Query: 453 KEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLED 512
+ ++ EFL+++ + VA G+ G RD ++ + +K E+L + + D
Sbjct: 491 QRLAGEFLKSNYLF---VAVGQVGGAC----RDVQQTILQVGQYSK-REKLVEILRNIGD 542
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
T+++V T+K+ IA +LC + + + + + + +F K V+VAT
Sbjct: 543 ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVA 602
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
G+D NV+ +I++ P +++ Y GR GR G+ + + +L S
Sbjct: 603 ARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 650
Score = 63 (27.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
N++ K G++ L QK ++ D + A TGSGK+ F +P L
Sbjct: 303 NNIAKA--GYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPIL 349
Score = 41 (19.5 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 28/113 (24%), Positives = 46/113 (40%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCL--VLAAT---GSGKSLC--FQIP 208
DWE ++ +K H S + F+K+ S+ A+ D A++ G G S F
Sbjct: 5 DWEAEI---IKPHIS-SYVPVFEKDRYSSG-ANGDTFNRTPASSSEMGDGSSRRDHFMRS 59
Query: 209 ALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMY 261
+G+ + P S + S + GV F G +NK E+ G +
Sbjct: 60 GFASGRSLGNRDPGESNKRENTSTVGGFGVGKSFGNRGFSNNKFEEGDSSGFW 112
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 139 (54.0 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 496 LNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH 555
++K + L +L +D LT+++V T+K S+ +L G + + +
Sbjct: 425 IDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484
Query: 556 TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
+F K ++VAT G+D NV+ +I++ P +E Y GR GR G+L +
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 544
Query: 616 AN 617
N
Sbjct: 545 FN 546
Score = 66 (28.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 26/98 (26%), Positives = 44/98 (44%)
Query: 125 QKESYPGMDCNLKAES-DSLAV-----SCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNF- 177
++E + G + + E D + V +CP +E SD V++ ++ G+ L +
Sbjct: 147 EQELFSGGNTGINFEKYDDIPVEATGNNCPPHIESFSD--VEMGEII---MGNIELTRYT 201
Query: 178 -----QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
QK A+ D + A TGSGK+ F +P L
Sbjct: 202 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 239
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 139 (54.0 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 496 LNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH 555
++K + L +L +D LT+++V T+K S+ +L G + + +
Sbjct: 425 IDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 484
Query: 556 TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
+F K ++VAT G+D NV+ +I++ P +E Y GR GR G+L +
Sbjct: 485 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 544
Query: 616 AN 617
N
Sbjct: 545 FN 546
Score = 66 (28.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 26/98 (26%), Positives = 44/98 (44%)
Query: 125 QKESYPGMDCNLKAES-DSLAV-----SCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNF- 177
++E + G + + E D + V +CP +E SD V++ ++ G+ L +
Sbjct: 147 EQELFSGGNTGINFEKYDDIPVEATGNNCPPHIESFSD--VEMGEII---MGNIELTRYT 201
Query: 178 -----QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
QK A+ D + A TGSGK+ F +P L
Sbjct: 202 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 239
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 133 (51.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 39/168 (23%), Positives = 81/168 (48%)
Query: 453 KEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLED 512
+ ++ EFL+++ + VA G+ G RD +S + + K + + +L+ + D
Sbjct: 474 QRLAGEFLKSNYLF---VAVGQVGGAC----RDVQQSILQVGPVFKKRKLVEILRN-IGD 525
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
+++V T+K+ IA +LC + + + + + + +F K V+VAT
Sbjct: 526 ERPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVA 585
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
G+D NV+ +I++ P +++ Y GR GR G+ + + + S
Sbjct: 586 ARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTES 633
Score = 73 (30.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
N++ K G++ L QK ++ LA D + A TGSGK+ F +P L
Sbjct: 286 NNIAKA--GYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPIL 332
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 133 (51.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 39/168 (23%), Positives = 81/168 (48%)
Query: 453 KEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLED 512
+ ++ EFL+++ + VA G+ G RD +S + + K + + +L+ + D
Sbjct: 474 QRLAGEFLKSNYLF---VAVGQVGGAC----RDVQQSILQVGPVFKKRKLVEILRN-IGD 525
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
+++V T+K+ IA +LC + + + + + + +F K V+VAT
Sbjct: 526 ERPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVA 585
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
G+D NV+ +I++ P +++ Y GR GR G+ + + + S
Sbjct: 586 ARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTES 633
Score = 73 (30.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
N++ K G++ L QK ++ LA D + A TGSGK+ F +P L
Sbjct: 286 NNIAKA--GYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPIL 332
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 136 (52.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 30/107 (28%), Positives = 51/107 (47%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +L +D LT+++V T+K S+ +L G + + + +F K
Sbjct: 433 LDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 492
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609
++VAT G+D NV+ +I++ P +E Y GR GR G+L
Sbjct: 493 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 539
Score = 69 (29.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 26/98 (26%), Positives = 45/98 (45%)
Query: 125 QKESYPGMDCNLKAES-DSLAV-----SCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNF- 177
++E + G + + E D + V +CP+ +E SD V++ ++ G+ L +
Sbjct: 148 EQELFSGGNTGINFEKYDDIPVEATGNNCPRHIESFSD--VEMGEII---MGNIELTRYT 202
Query: 178 -----QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
QK A+ D + A TGSGK+ F +P L
Sbjct: 203 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 240
Score = 37 (18.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 477 GHSPHRDRDTDRSFERTDLLNKPA 500
G S +D+D SF D KP+
Sbjct: 61 GWSCSKDKDAYSSFGSRDSRGKPS 84
>CGD|CAL0006152 [details] [associations]
symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
in response to nitrogen starvation" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0000753 "cell
morphogenesis involved in conjugation with cellular fusion"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
"induction of conjugation upon nitrogen starvation" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 124 (48.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 34/118 (28%), Positives = 56/118 (47%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L+ L L+ +II+ + +AK + G +A +P+ +V EF + K
Sbjct: 258 LNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGK 317
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
+ +V + GID V +I++ +P++ E Y GR+GR GHL L NL S
Sbjct: 318 VRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG---LAINLMS 372
Score = 79 (32.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 40/150 (26%), Positives = 64/150 (42%)
Query: 156 DWEVKVNSLLKKHF--GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT- 212
D+ +K LL F G Q+E++ LA D L A G+GK+ F IP L
Sbjct: 34 DFNLK-RELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLV 92
Query: 213 ----GKV-VVVISPL--ISLMHDQCSK-LSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264
KV +++ P ++L Q + L KH T C + +G + + L I+
Sbjct: 93 KPKLNKVQALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRLHDPVHIL 152
Query: 265 YVCPETVIRLIKPLQRLAESRGIALFAIDE 294
P V+ L +++ + LF +DE
Sbjct: 153 VGTPGRVLDLAA--RKVVDLSECPLFVMDE 180
>UNIPROTKB|Q5AAW3 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 124 (48.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 34/118 (28%), Positives = 56/118 (47%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L+ L L+ +II+ + +AK + G +A +P+ +V EF + K
Sbjct: 258 LNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGK 317
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
+ +V + GID V +I++ +P++ E Y GR+GR GHL L NL S
Sbjct: 318 VRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG---LAINLMS 372
Score = 79 (32.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 40/150 (26%), Positives = 64/150 (42%)
Query: 156 DWEVKVNSLLKKHF--GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT- 212
D+ +K LL F G Q+E++ LA D L A G+GK+ F IP L
Sbjct: 34 DFNLK-RELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLV 92
Query: 213 ----GKV-VVVISPL--ISLMHDQCSK-LSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264
KV +++ P ++L Q + L KH T C + +G + + L I+
Sbjct: 93 KPKLNKVQALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRLHDPVHIL 152
Query: 265 YVCPETVIRLIKPLQRLAESRGIALFAIDE 294
P V+ L +++ + LF +DE
Sbjct: 153 VGTPGRVLDLAA--RKVVDLSECPLFVMDE 180
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 138 (53.6 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 496 LNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH 555
L+K + L +L +D LT+++V T+K ++ +L G + + +
Sbjct: 402 LDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEAL 461
Query: 556 TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
+F K ++VAT G+D NV+ +I++ P +E Y GR GR G+L +
Sbjct: 462 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 521
Query: 616 AN 617
N
Sbjct: 522 FN 523
Score = 66 (28.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 26/98 (26%), Positives = 43/98 (43%)
Query: 125 QKESYPGMDCNLKAES-DSLAV-----SCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNF- 177
++E + G + + E D + V +CP +E SD V + ++ G+ L +
Sbjct: 123 EQELFSGSNTGINFEKYDDIPVEATGSNCPPHIESFSD--VDMGEII---MGNIELTRYT 177
Query: 178 -----QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
QK A+ D + A TGSGK+ F +P L
Sbjct: 178 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 215
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 138 (53.6 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 496 LNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH 555
L+K + L +L +D LT+++V T+K ++ +L G + + +
Sbjct: 403 LDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEAL 462
Query: 556 TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
+F K ++VAT G+D NV+ +I++ P +E Y GR GR G+L +
Sbjct: 463 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 522
Query: 616 AN 617
N
Sbjct: 523 FN 524
Score = 66 (28.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 26/98 (26%), Positives = 43/98 (43%)
Query: 125 QKESYPGMDCNLKAES-DSLAV-----SCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNF- 177
++E + G + + E D + V +CP +E SD V + ++ G+ L +
Sbjct: 125 EQELFSGSNTGINFEKYDDIPVEATGSNCPPHIESFSD--VDMGEII---MGNIELTRYT 179
Query: 178 -----QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
QK A+ D + A TGSGK+ F +P L
Sbjct: 180 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 217
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 134 (52.2 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 41/168 (24%), Positives = 80/168 (47%)
Query: 450 PMG--KEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQ 507
P G K+ + EFL+N ++ VA G+ G D ++ + +K E+L +
Sbjct: 463 PRGNFKDWAGEFLKNLTI--CLVAVGQVGGACS----DVQQTVLQVGQYSK-REKLVEIL 515
Query: 508 EPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVV 567
+ + T+++V T+K+ IA +LC + + + + + + +F K V+V
Sbjct: 516 RNIGEERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLV 575
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
AT G+D NV+ +I++ P +++ Y GR GR G+ + +
Sbjct: 576 ATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGKAISF 623
Score = 71 (30.1 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
G++ L QK + LA D + A TGSGK+ F +P L
Sbjct: 285 GYTKLTPVQKYGIPIILAGRDLMACAQTGSGKTAAFLLPIL 325
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 137 (53.3 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 31/115 (26%), Positives = 53/115 (46%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +L +D LT+++V T+K S+ +L G + + + +F K
Sbjct: 431 LDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 490
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
++VAT G+D NV+ +I++ P +E Y GR GR G+L + N
Sbjct: 491 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN 545
Score = 67 (28.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 44/188 (23%), Positives = 71/188 (37%)
Query: 35 SFNDAIEYILNGSVRNSKGKSVSWSSKCVTENGKTLGKRTLSSANSLGQMRQASLLDHFQ 94
S D Y GS +S+GKS +S + G+ R + +G ++
Sbjct: 62 SSKDKDAYSSFGSRSDSRGKSSFFSDRGSGSRGR-FDDRGRGDYDGIGGRGDRGGFGKYE 120
Query: 95 SGNRQKRGKRNXXXXXXXXXXXXXXXIVEEQKESYPGMDCNLKAES-DSLAV-----SCP 148
GN + K + EQ E + G + + E D + V +CP
Sbjct: 121 RGNSRWCDKSDEDDWSKPLPPSERL----EQ-ELFSGGNTGINFEKYDDIPVEATGNNCP 175
Query: 149 KEVEIGSDWEVKVNSLLKKHFGHSSLKNF------QKEALSAWLAHHDCLVLAATGSGKS 202
+E SD V++ ++ G+ L + QK A+ D + A TGSGK+
Sbjct: 176 PHIESFSD--VEMGEII---MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 230
Query: 203 LCFQIPAL 210
F +P L
Sbjct: 231 AAFLLPIL 238
>UNIPROTKB|E1BXX5 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
NextBio:20826688 Uniprot:E1BXX5
Length = 625
Score = 130 (50.8 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 548 KSQLRR--VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGR 605
KSQ+ R + + K EV+V+T G G+D +NV+ ++++ P S++ Y + GRAGR
Sbjct: 485 KSQVERTAILQGLLQEKYEVIVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRAGR 544
Query: 606 DGHLADCVLYANLSS 620
GH + + N +S
Sbjct: 545 LGHSGTAITFINNNS 559
Score = 73 (30.8 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 36/156 (23%), Positives = 70/156 (44%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV---- 216
+NS LK G+ Q + + L D + A TGSGK+ F +P ++ KV+
Sbjct: 220 LNSNLKNS-GYEVPTPIQMQMIPVGLLGRDIVASADTGSGKTAAFLLPVIM--KVLNETE 276
Query: 217 ----VVISPL--ISLMHDQCSKLSKHGV----TACFLGSGQPDNKVEQKALRGMYSIIYV 266
++++P +++ ++ +K G+ T +G G P + L+ +I
Sbjct: 277 TPSALILAPTRELAIQIERQAKELMAGLPNMRTVLLVG-GLP-LPPQLHRLKQSVKVIIA 334
Query: 267 CPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWG 302
P ++ +++ Q + GI + +DEV + K G
Sbjct: 335 TPGRLLEILR--QSSVQLHGIKIVVVDEVDTMLKMG 368
Score = 44 (20.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 342 IQVREDILKSLHMSKG 357
+Q +E+ LKS H++KG
Sbjct: 144 MQEKEEKLKSAHLAKG 159
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 134 (52.2 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 31/131 (23%), Positives = 65/131 (49%)
Query: 485 DTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544
D ++ + L+K + + +LQ + T+++V T+K+ +A +LC + + + +
Sbjct: 393 DVQQNILQVPRLSKRDKLIEILQSTGGER-TMVFVDTKKKADYLAAFLCQENLPSTSIHG 451
Query: 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAG 604
+ + +F K +++VAT G+D NV+ +I++ P ++E Y GR G
Sbjct: 452 DREQREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTG 511
Query: 605 RDGHLADCVLY 615
R G+ V +
Sbjct: 512 RCGNTGKAVSF 522
Score = 67 (28.6 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIP 208
G+S L QK ++ A D + A TGSGK+ F +P
Sbjct: 186 GYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLP 224
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 133 (51.9 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 32/131 (24%), Positives = 61/131 (46%)
Query: 485 DTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544
D ++ D K + + +LQE + T+++V T+K+ IA +LC V + + +
Sbjct: 512 DVEQMVIEVDEFGKKDKLMEILQE-IGSERTMVFVKTKKKADFIATFLCQEKVPSTSIHG 570
Query: 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAG 604
+ + +F + V+VAT G+D NV +I++ P ++ Y GR G
Sbjct: 571 DREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRTG 630
Query: 605 RDGHLADCVLY 615
R G+ + +
Sbjct: 631 RCGNTGRAISF 641
Score = 69 (29.3 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
G+ L QK ++ +A D + A TGSGK+ F +P L
Sbjct: 305 GYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPIL 345
Score = 45 (20.9 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 18/71 (25%), Positives = 24/71 (33%)
Query: 646 RYGMNTSCCRAKILVEYF---GEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAY 702
R G C + +F G+D L V D E+ EE +AY
Sbjct: 625 RIGRTGRCGNTGRAISFFDKRGDDEQRIARSLVKVLSDAHQEVPAWLEEVAFSAHGSSAY 684
Query: 703 NEQSNSMDDDD 713
N +SN D
Sbjct: 685 NPRSNKFASTD 695
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 134 (52.2 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 31/131 (23%), Positives = 65/131 (49%)
Query: 485 DTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544
D ++ + L+K + + +LQ + T+++V T+K+ +A +LC + + + +
Sbjct: 393 DVQQNILQVPRLSKRDKLIEILQSTGGER-TMVFVDTKKKADYLAAFLCQENLPSTSIHG 451
Query: 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAG 604
+ + +F K +++VAT G+D NV+ +I++ P ++E Y GR G
Sbjct: 452 DREQREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTG 511
Query: 605 RDGHLADCVLY 615
R G+ V +
Sbjct: 512 RCGNTGKAVSF 522
Score = 67 (28.6 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIP 208
G+S L QK ++ A D + A TGSGK+ F +P
Sbjct: 186 GYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLP 224
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 110 (43.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 46/185 (24%), Positives = 80/185 (43%)
Query: 147 CPKEVE--IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLC 204
CPK ++ + +K+ + LKKH G+ Q +A+ A ++ D + +A TGSGK++
Sbjct: 367 CPKPIKSWVQCGISMKILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIA 425
Query: 205 FQIPALL-----------TGKVVVVISPLISL---MHDQCSKLSKH-GV-TACFLGSGQP 248
F +P G + V+++P L + +C K SK G+ C G
Sbjct: 426 FLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGI 485
Query: 249 DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ-RLAESRGIALFAIDEVHCVSKWGHDFRP 307
++ + RG II P +I ++ R+ R + +DE + G F P
Sbjct: 486 SEQIAELK-RGA-EIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMG--FEP 541
Query: 308 DYRRL 312
R+
Sbjct: 542 QVMRI 546
Score = 98 (39.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 25/106 (23%), Positives = 46/106 (43%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +L E G II+V ++ + K L + + + + + +F
Sbjct: 610 LELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGT 669
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGH 608
+++VAT G+D ++ +++Y P E Y AGR GR G+
Sbjct: 670 CKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGN 715
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 112 (44.5 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 26/96 (27%), Positives = 45/96 (46%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
+I+ T+ + + L G +AA+ +L +++ + F + +++VAT G
Sbjct: 243 LIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARG 302
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD 611
ID V +I+Y P + EAY GR GR D
Sbjct: 303 IDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGD 338
Score = 87 (35.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 40/154 (25%), Positives = 68/154 (44%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKV-VVVISP- 221
G+ + Q +A+ A +A D + LA TG+GK+ F +P L G+V +VI+P
Sbjct: 20 GYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHRLQQGERGRVRALVIAPT 79
Query: 222 --LISLMHDQCSKLSKHG-VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
L ++D L + + + + G N QK G ++ CP ++ I
Sbjct: 80 RELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGA-EVVVACPGRLLDHIA-- 136
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312
Q + + + +DE + G F PD RR+
Sbjct: 137 QGTIDLSRLEVLVLDEADQMFDMG--FLPDIRRV 168
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 110 (43.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 46/185 (24%), Positives = 80/185 (43%)
Query: 147 CPKEVE--IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLC 204
CPK ++ + +K+ + LKKH G+ Q +A+ A ++ D + +A TGSGK++
Sbjct: 367 CPKPIKSWVQCGISMKILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIA 425
Query: 205 FQIPALL-----------TGKVVVVISPLISL---MHDQCSKLSKH-GV-TACFLGSGQP 248
F +P G + V+++P L + +C K SK G+ C G
Sbjct: 426 FLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGI 485
Query: 249 DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ-RLAESRGIALFAIDEVHCVSKWGHDFRP 307
++ + RG II P +I ++ R+ R + +DE + G F P
Sbjct: 486 SEQIAELK-RGA-EIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMG--FEP 541
Query: 308 DYRRL 312
R+
Sbjct: 542 QVMRI 546
Score = 98 (39.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 25/106 (23%), Positives = 46/106 (43%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +L E G II+V ++ + K L + + + + + +F
Sbjct: 610 LELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGT 669
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGH 608
+++VAT G+D ++ +++Y P E Y AGR GR G+
Sbjct: 670 CKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGN 715
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 110 (43.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 46/185 (24%), Positives = 80/185 (43%)
Query: 147 CPKEVE--IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLC 204
CPK ++ + +K+ + LKKH G+ Q +A+ A ++ D + +A TGSGK++
Sbjct: 367 CPKPIKSWVQCGISMKILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIA 425
Query: 205 FQIPALL-----------TGKVVVVISPLISL---MHDQCSKLSKH-GV-TACFLGSGQP 248
F +P G + V+++P L + +C K SK G+ C G
Sbjct: 426 FLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGI 485
Query: 249 DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ-RLAESRGIALFAIDEVHCVSKWGHDFRP 307
++ + RG II P +I ++ R+ R + +DE + G F P
Sbjct: 486 SEQIAELK-RGA-EIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMG--FEP 541
Query: 308 DYRRL 312
R+
Sbjct: 542 QVMRI 546
Score = 98 (39.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 25/106 (23%), Positives = 46/106 (43%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +L E G II+V ++ + K L + + + + + +F
Sbjct: 610 LELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGT 669
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGH 608
+++VAT G+D ++ +++Y P E Y AGR GR G+
Sbjct: 670 CKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGN 715
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 110 (43.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 46/185 (24%), Positives = 80/185 (43%)
Query: 147 CPKEVE--IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLC 204
CPK ++ + +K+ + LKKH G+ Q +A+ A ++ D + +A TGSGK++
Sbjct: 367 CPKPIKSWVQCGISMKILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIA 425
Query: 205 FQIPALL-----------TGKVVVVISPLISL---MHDQCSKLSKH-GV-TACFLGSGQP 248
F +P G + V+++P L + +C K SK G+ C G
Sbjct: 426 FLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGI 485
Query: 249 DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ-RLAESRGIALFAIDEVHCVSKWGHDFRP 307
++ + RG II P +I ++ R+ R + +DE + G F P
Sbjct: 486 SEQIAELK-RGA-EIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMG--FEP 541
Query: 308 DYRRL 312
R+
Sbjct: 542 QVMRI 546
Score = 98 (39.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 25/106 (23%), Positives = 46/106 (43%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +L E G II+V ++ + K L + + + + + +F
Sbjct: 610 LELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGT 669
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGH 608
+++VAT G+D ++ +++Y P E Y AGR GR G+
Sbjct: 670 CKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGN 715
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 110 (43.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 46/185 (24%), Positives = 80/185 (43%)
Query: 147 CPKEVE--IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLC 204
CPK ++ + +K+ + LKKH G+ Q +A+ A ++ D + +A TGSGK++
Sbjct: 367 CPKPIKSWVQCGISMKILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIA 425
Query: 205 FQIPALL-----------TGKVVVVISPLISL---MHDQCSKLSKH-GV-TACFLGSGQP 248
F +P G + V+++P L + +C K SK G+ C G
Sbjct: 426 FLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGI 485
Query: 249 DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ-RLAESRGIALFAIDEVHCVSKWGHDFRP 307
++ + RG II P +I ++ R+ R + +DE + G F P
Sbjct: 486 SEQIAELK-RGA-EIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMG--FEP 541
Query: 308 DYRRL 312
R+
Sbjct: 542 QVMRI 546
Score = 98 (39.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 25/106 (23%), Positives = 46/106 (43%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +L E G II+V ++ + K L + + + + + +F
Sbjct: 610 LELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGT 669
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGH 608
+++VAT G+D ++ +++Y P E Y AGR GR G+
Sbjct: 670 CKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGN 715
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 110 (43.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 46/185 (24%), Positives = 80/185 (43%)
Query: 147 CPKEVE--IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLC 204
CPK ++ + +K+ + LKKH G+ Q +A+ A ++ D + +A TGSGK++
Sbjct: 367 CPKPIKSWVQCGISMKILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIA 425
Query: 205 FQIPALL-----------TGKVVVVISPLISL---MHDQCSKLSKH-GV-TACFLGSGQP 248
F +P G + V+++P L + +C K SK G+ C G
Sbjct: 426 FLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGI 485
Query: 249 DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ-RLAESRGIALFAIDEVHCVSKWGHDFRP 307
++ + RG II P +I ++ R+ R + +DE + G F P
Sbjct: 486 SEQIAELK-RGA-EIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMG--FEP 541
Query: 308 DYRRL 312
R+
Sbjct: 542 QVMRI 546
Score = 98 (39.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 25/106 (23%), Positives = 46/106 (43%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +L E G II+V ++ + K L + + + + + +F
Sbjct: 610 LELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGT 669
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGH 608
+++VAT G+D ++ +++Y P E Y AGR GR G+
Sbjct: 670 CKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGN 715
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 110 (43.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 46/185 (24%), Positives = 80/185 (43%)
Query: 147 CPKEVE--IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLC 204
CPK ++ + +K+ + LKKH G+ Q +A+ A ++ D + +A TGSGK++
Sbjct: 367 CPKPIKSWVQCGISMKILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIA 425
Query: 205 FQIPALL-----------TGKVVVVISPLISL---MHDQCSKLSKH-GV-TACFLGSGQP 248
F +P G + V+++P L + +C K SK G+ C G
Sbjct: 426 FLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGI 485
Query: 249 DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ-RLAESRGIALFAIDEVHCVSKWGHDFRP 307
++ + RG II P +I ++ R+ R + +DE + G F P
Sbjct: 486 SEQIAELK-RGA-EIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMG--FEP 541
Query: 308 DYRRL 312
R+
Sbjct: 542 QVMRI 546
Score = 98 (39.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 25/106 (23%), Positives = 46/106 (43%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +L E G II+V ++ + K L + + + + + +F
Sbjct: 610 LELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGT 669
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGH 608
+++VAT G+D ++ +++Y P E Y AGR GR G+
Sbjct: 670 CKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGN 715
>TIGR_CMR|BA_2109 [details] [associations]
symbol:BA_2109 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:MMAINTI HSSP:P10081 HOGENOM:HOG000268811
RefSeq:NP_844507.1 RefSeq:YP_018751.1 RefSeq:YP_028224.1
ProteinModelPortal:Q81RE0 DNASU:1085806
EnsemblBacteria:EBBACT00000011412 EnsemblBacteria:EBBACT00000014072
EnsemblBacteria:EBBACT00000023039 GeneID:1085806 GeneID:2818618
GeneID:2851363 KEGG:ban:BA_2109 KEGG:bar:GBAA_2109 KEGG:bat:BAS1961
ProtClustDB:CLSK886848 BioCyc:BANT260799:GJAJ-2029-MONOMER
BioCyc:BANT261594:GJ7F-2106-MONOMER Uniprot:Q81RE0
Length = 389
Score = 107 (42.7 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAY 596
+KAAA +A K + F KLE+++AT GID ++ +IH P +++ Y
Sbjct: 259 MKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQY 318
Query: 597 YQEAGRAGRDG 607
+GR GR G
Sbjct: 319 IHRSGRTGRMG 329
Score = 90 (36.7 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 34/137 (24%), Positives = 66/137 (48%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL--LTGKV----VVVISP-- 221
G L QK+A+ L D + + TG+GK+L + +P L + +V VVV++P
Sbjct: 17 GFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKINPEVKQPQVVVLAPTR 76
Query: 222 -LISLMHDQCSKLSKHG-VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
L+ +H++ K + ++ L G D K + + L+ +I P ++ LI+ +
Sbjct: 77 ELVMQIHEEVQKFTAGTEISGASLIGGA-DIKRQVEKLKKHPRVIVGSPGRILELIRMKK 135
Query: 280 -RLAESRGIALFAIDEV 295
++ E + I D++
Sbjct: 136 LKMHEVKTIVFDEFDQI 152
>UNIPROTKB|A5D7C1 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:BC140501 IPI:IPI00692860
RefSeq:NP_001096708.1 UniGene:Bt.51117 ProteinModelPortal:A5D7C1
SMR:A5D7C1 PRIDE:A5D7C1 Ensembl:ENSBTAT00000013622 GeneID:510826
KEGG:bta:510826 CTD:11056 GeneTree:ENSGT00550000074863
HOGENOM:HOG000242486 HOVERGEN:HBG051332 InParanoid:A5D7C1 KO:K14779
OMA:NVMKQSG OrthoDB:EOG4XKV6Q NextBio:20869637 ArrayExpress:A5D7C1
Uniprot:A5D7C1
Length = 596
Score = 108 (43.1 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 32/127 (25%), Positives = 54/127 (42%)
Query: 502 RLSMLQEPLEDGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQL-RRVHTE 557
+L ++E ++ G +++V + + + L G+ +A + Q VH+
Sbjct: 397 KLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHS- 455
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F K+ V++ T GID V +I+Y +P S Y GR GR GH V +
Sbjct: 456 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFT 515
Query: 618 LSSMPTL 624
P L
Sbjct: 516 EDDKPLL 522
Score = 94 (38.1 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 33/93 (35%), Positives = 47/93 (50%)
Query: 156 DWEVKVNSLLKKHF---GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL- 211
D E K+NS L ++ G + Q +A+ L + L A TGSGK+L F IP L+
Sbjct: 165 DQEYKINSRLLQNILDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMH 224
Query: 212 ----TGKV--VVVISP---LISLMHDQCSKLSK 235
T K ++ISP L S +H + KLS+
Sbjct: 225 LKQPTNKGFRALIISPTRELASQIHRELVKLSE 257
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 139 (54.0 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 34/122 (27%), Positives = 57/122 (46%)
Query: 497 NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHT 556
N E+L + + E T+I+V T+K+ IA YLC + + + + Q
Sbjct: 511 NGKMEKLLEILKSSEKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALW 570
Query: 557 EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616
+F K V+V T G+D NV+ +I+Y P+ ++ Y GR GR G+ +
Sbjct: 571 DFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKATSFF 630
Query: 617 NL 618
N+
Sbjct: 631 NV 632
Score = 69 (29.3 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
G+ L QK ++ +A D + A TGSGK+ F +P L
Sbjct: 293 GYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPIL 333
Score = 37 (18.1 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 76 SSANSLGQMRQASLLDHFQSGNRQKRGK 103
S N G + S +F G+R +RG+
Sbjct: 49 SFGNRGGYRSERSRPSNFNRGSRTERGR 76
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 137 (53.3 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 36/124 (29%), Positives = 61/124 (49%)
Query: 496 LNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH 555
L+K + L +L +D LT+++V T+K S+ +L F + A + +SQ R
Sbjct: 424 LDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFL--FQERYACTSIHGDRSQKDREE 481
Query: 556 T--EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV 613
+F + ++VAT G+D NV+ +I++ P +E Y GR GR G+L
Sbjct: 482 ALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 541
Query: 614 LYAN 617
+ N
Sbjct: 542 SFFN 545
Score = 64 (27.6 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 25/98 (25%), Positives = 44/98 (44%)
Query: 125 QKESYPGMDCNLKAES-DSLAV-----SCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNF- 177
++E + G + + E D + V +CP +E SD +++ ++ G+ L +
Sbjct: 146 EQELFSGGNTGINFEKYDDIPVEATGNNCPPHIENFSD--IEMGEII---MGNIELTRYT 200
Query: 178 -----QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
QK A+ D + A TGSGK+ F +P L
Sbjct: 201 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 238
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 105 (42.0 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 62/266 (23%), Positives = 116/266 (43%)
Query: 137 KAESDSLAVS---CPKEVEIGSDWEV--KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDC 191
+ E DS+ V CPK ++ + V K+ ++LKK F +S + Q +A+ + ++ D
Sbjct: 286 REELDSITVKGIDCPKPIKTWAQCGVNLKMMNVLKK-FEYSKPTSIQAQAIPSIMSGRDV 344
Query: 192 LVLAATGSGKSLCFQIPA---LLT--------GKVVVVISPLISLM---HDQCSKLSKH- 236
+ +A TGSGK+L F +P +L G + V+++P L + + +K +K
Sbjct: 345 IGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVILAPTRELAMQTYKEANKFAKPL 404
Query: 237 GV-TACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQ-RLAESRGIALFAIDE 294
G+ AC G ++ RG I+ P +I ++ ++ R + +DE
Sbjct: 405 GLKVACTYGGVGISEQIADLK-RGA-EIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDE 462
Query: 295 VHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQV--REDILKSL 352
+ G F P ++ NN++ K + L + T ++ R+ + K +
Sbjct: 463 ADRMFDKG--FEPQIMKV--------VNNIRPDKQTV-LFSATFPRHMEALARKVLDKPV 511
Query: 353 HMSKGTKFVLTSFFRPNLRFSVKHSK 378
+ G K V+ S N +H K
Sbjct: 512 EILVGGKSVVCSDITQNAVICAEHQK 537
Score = 101 (40.6 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 27/106 (25%), Positives = 48/106 (45%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA-YNASLPKSQLRRVHTEFHEN 561
L +L E+G +I++V +++ I L G + A + + + +F
Sbjct: 542 LELLGMYYEEGSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTG 601
Query: 562 KLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607
++V+VAT G+D N+ +++Y P E Y GR GR G
Sbjct: 602 VIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAG 647
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 120 (47.3 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 35/162 (21%), Positives = 69/162 (42%)
Query: 480 PHRDRDT-DRSFERTDLLNKPAERLS-MLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGV 537
P R+R + + R D + E L +L E E +I+++ TR+ + L +
Sbjct: 214 PRRERKKISQWYHRADDMPHKVELLKKILTEQAER--SIVFLKTRERLADLRAELEKAQI 271
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
A +P+ + + F E + +++AT GID ++ +I++ P+S + Y
Sbjct: 272 PCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYL 331
Query: 598 QEAGRAGRDGHLADCVLYANLSSMPTLLPSRRS-EDQTKQAY 638
GR GR G + P + R +++ K+ +
Sbjct: 332 HRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERF 373
Score = 76 (31.8 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 41/160 (25%), Positives = 63/160 (39%)
Query: 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---------TGKV-V 216
+ G S Q EA+ L D L A TG+GK+ F IPAL G +
Sbjct: 19 EEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRKAGPARI 78
Query: 217 VVISPLISL---MHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIR 273
++++P L + +Q L+K+ F +G + L I+ P ++
Sbjct: 79 LILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLE 138
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLS 313
I +R + R I +DE + G F P RLS
Sbjct: 139 YIDA-ERF-DCRAIEWLILDEADRMLDMG--FGPTVDRLS 174
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 120 (47.3 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 35/162 (21%), Positives = 69/162 (42%)
Query: 480 PHRDRDT-DRSFERTDLLNKPAERLS-MLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGV 537
P R+R + + R D + E L +L E E +I+++ TR+ + L +
Sbjct: 214 PRRERKKISQWYHRADDMPHKVELLKKILTEQAER--SIVFLKTRERLADLRAELEKAQI 271
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
A +P+ + + F E + +++AT GID ++ +I++ P+S + Y
Sbjct: 272 PCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYL 331
Query: 598 QEAGRAGRDGHLADCVLYANLSSMPTLLPSRRS-EDQTKQAY 638
GR GR G + P + R +++ K+ +
Sbjct: 332 HRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERF 373
Score = 76 (31.8 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 41/160 (25%), Positives = 63/160 (39%)
Query: 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---------TGKV-V 216
+ G S Q EA+ L D L A TG+GK+ F IPAL G +
Sbjct: 19 EEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRKAGPARI 78
Query: 217 VVISPLISL---MHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIR 273
++++P L + +Q L+K+ F +G + L I+ P ++
Sbjct: 79 LILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLE 138
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLS 313
I +R + R I +DE + G F P RLS
Sbjct: 139 YIDA-ERF-DCRAIEWLILDEADRMLDMG--FGPTVDRLS 174
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 130 (50.8 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 30/110 (27%), Positives = 50/110 (45%)
Query: 505 MLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLE 564
++ E + G I++ T+++ ++ Y K A + + +SQ R F +
Sbjct: 342 LVTEHAKGGKCIVFTQTKRDADRLS-YALARSFKCEALHGDISQSQRERTLAGFRDGHFN 400
Query: 565 VVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL 614
++VAT G+D NV IIHY P + E + GR GR G +L
Sbjct: 401 ILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAIL 450
Score = 70 (29.7 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 25/70 (35%), Positives = 34/70 (48%)
Query: 141 DSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSG 200
D LA+S E+G E+ V +L K G L QK L + D + A TG+G
Sbjct: 102 DGLAIS-----ELGISPEI-VKALSSK--GIEKLFPIQKAVLEPAMEGRDMIGRARTGTG 153
Query: 201 KSLCFQIPAL 210
K+L F IP +
Sbjct: 154 KTLAFGIPII 163
>GENEDB_PFALCIPARUM|PFC0915w [details] [associations]
symbol:PFC0915w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006200 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844502 HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
ProtClustDB:CLSZ2429504 RefSeq:XP_001351278.1
ProteinModelPortal:O97285 SMR:O97285 EnsemblProtists:PFC0915w:mRNA
GeneID:814522 KEGG:pfa:PFC0915w EuPathDB:PlasmoDB:PF3D7_0320800
Uniprot:O97285
Length = 433
Score = 114 (45.2 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 29/107 (27%), Positives = 52/107 (48%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L+ L L+ II+ + +AK + G + +A + ++ RV +F
Sbjct: 288 LNTLFAKLQINQAIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGA 347
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609
+V++ F GID +V +I++ +P++ E Y GR+GR GHL
Sbjct: 348 CRCLVSSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHL 394
Score = 81 (33.6 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 30/135 (22%), Positives = 58/135 (42%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---------LTGKVVVVIS 220
G+ Q+E++ LA + L A G+GK+ F IP L + G ++V
Sbjct: 79 GYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLLEKCNTHKNFIQGLILVPTR 138
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
L +L KH C + +G + + +R +Y+++++ T R++ +
Sbjct: 139 ELALQTSAMIKELGKHMKVQCMVTTG--GTSLREDIMR-LYNVVHILCGTPGRILDLANK 195
Query: 281 -LAESRGIALFAIDE 294
+A G + +DE
Sbjct: 196 DVANLSGCHIMVMDE 210
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 140 (54.3 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 31/131 (23%), Positives = 65/131 (49%)
Query: 485 DTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544
D +++F + NK + L +L+ + T+++V T+++ IA +LC V + +
Sbjct: 407 DVEQTFLQVTKFNKREQLLDLLRT-IGSERTMVFVETKRQADFIAAFLCQEKVPTTSIHG 465
Query: 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAG 604
+ + + +F K V+VAT G+D +V+ ++++ P +++ Y GR G
Sbjct: 466 DREQREREKALADFRSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVHRIGRTG 525
Query: 605 RDGHLADCVLY 615
R G+ V +
Sbjct: 526 RCGNTGRAVSF 536
Score = 58 (25.5 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
QK L A D + A TGSGK+ F +P L
Sbjct: 208 QKYGLPIISAGRDLMACAQTGSGKTAAFLLPIL 240
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 121 (47.7 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 46/167 (27%), Positives = 79/167 (47%)
Query: 147 CPKEVEIGSDWEV--KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLC 204
CPK ++ + + KV+ LLKK F + + Q + + A + D + +A TGSGK+L
Sbjct: 504 CPKPIQSWAQAGLTEKVHLLLKK-FQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLA 562
Query: 205 FQIPA---LLT--------GKVVVVISPLISL---MHDQCSKLSKH-GV-TACFLGSGQP 248
F +P +L G + +++SP L +H +C K SK G+ TAC G
Sbjct: 563 FLLPMFRHILAQPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASI 622
Query: 249 DNKVEQKALRGMYSIIYVCPETVIRLI-KPLQRLAESRGIALFAIDE 294
++ + RG I+ P +I ++ +R+ R + +DE
Sbjct: 623 SEQIAELK-RGA-DIVVCTPGRMIDILCANNRRITNLRRVTFLVLDE 667
Score = 84 (34.6 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 21/97 (21%), Positives = 49/97 (50%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLE-VVVATIA 571
G +I+ ++ T ++ + L + + + S ++ ++F +NK++ +++AT
Sbjct: 757 GQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDF-KNKVKTILIATPL 815
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGH 608
G+D ++ ++++ P LE Y GR GR G+
Sbjct: 816 ASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGN 852
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 110 (43.8 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 30/118 (25%), Positives = 55/118 (46%)
Query: 490 FERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKS 549
FE+ D + K E++ ++ +++ T++ I ++L G A + + +
Sbjct: 369 FEKRDRMIKHLEKI--MEN--RGNKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQ 424
Query: 550 QLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607
+ V EF K ++VAT GID ++ +I+Y +P + E Y GR GR G
Sbjct: 425 ERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAG 482
Score = 88 (36.0 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 53/214 (24%), Positives = 90/214 (42%)
Query: 127 ESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGH---SSLK--NFQKE- 180
+ +P + + E D C V+ G D V + + F S +K F+K
Sbjct: 106 KEHPDVTARSQREVDEFRKKCEMTVQ-GRDVPRPVETFDEAGFPQYVLSEVKAQGFEKPT 164
Query: 181 ALSA--W---LAHHDCLVLAATGSGKSLCFQIPALL-----------TGKVVVVISPLIS 224
A+ + W L+ D + +A TGSGK+L + +PA++ G +V++++P
Sbjct: 165 AIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLILAPTRE 224
Query: 225 LMHDQCSKLSKHGVTA-----CFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
L +++SK G ++ C G G P + RG + VC T RLI L+
Sbjct: 225 LAVQIQAEISKFGKSSRIRNTCVYG-GVPKGPQIRDLSRG----VEVCIATPGRLIDMLE 279
Query: 280 R-LAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312
R + +DE + G F P R++
Sbjct: 280 AGRTNLRRVTYLVLDEADRMLDMG--FEPQIRKI 311
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 127 (49.8 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 29/122 (23%), Positives = 57/122 (46%)
Query: 496 LNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH 555
+ K + + +L + L +++V T++ +A +L +++ + + L + + R
Sbjct: 382 MEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNL 441
Query: 556 TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
F + ++VAT G+D NVR +I+Y P + Y GR GR G+L +
Sbjct: 442 ELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSF 501
Query: 616 AN 617
N
Sbjct: 502 FN 503
Score = 71 (30.1 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
G+S QK ++ LA+ D + A TGSGK+ F +P +
Sbjct: 158 GYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPII 198
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 123 (48.4 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 30/103 (29%), Positives = 52/103 (50%)
Query: 516 IIYVPTRKETLSIAKYLCGF-GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
++YV +R +A + GVKA + + P + R V F ++ V+V+T G
Sbjct: 361 VVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGR 420
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
G+D L VR++I + P +++ Y GRA R G +++ N
Sbjct: 421 GVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVN 463
Score = 72 (30.4 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 40/145 (27%), Positives = 62/145 (42%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT--------------GKVVVVISPLI 223
Q +A+ A L L A TGSGK+ F +P + + +V++P
Sbjct: 137 QMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTR 196
Query: 224 SL---MHDQCSKLSKHGV---TACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKP 277
L + DQ L K G+ TA +G G P + + +G+ II P V+ L+
Sbjct: 197 ELCVQVEDQAKMLGK-GLPFKTALVVG-GDPMSGQLYRIQQGVELIIGT-PGRVVDLLS- 252
Query: 278 LQRLAESRGIALFAIDEVHCVSKWG 302
+ E I F +DEV C+ + G
Sbjct: 253 -KHTIELDNIMTFVLDEVDCMLQRG 276
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 117 (46.2 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 34/125 (27%), Positives = 60/125 (48%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR--VH 555
K LS L D I++ TRK + + L G K+ + + KSQ R V
Sbjct: 615 KKERMLSFLGSVGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGN--KSQPERDFVL 672
Query: 556 TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
++F + +++AT G+D +++ +++Y +P ++E Y GR R G A V Y
Sbjct: 673 SQFKNGMVPIMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAG--ASGVSY 730
Query: 616 ANLSS 620
+ L++
Sbjct: 731 SLLTT 735
Score = 83 (34.3 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 37/151 (24%), Positives = 64/151 (42%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----------TGKVVVVISPLISLM 226
Q +A L D + LA TGSGK+L F +P+++ G +V+V++P L
Sbjct: 411 QSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLREDDGPIVLVLAPTRELA 470
Query: 227 HDQCSKLSKHGVTA-----CFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
+ +K G T+ C G +V AL+ I+ P +I +++ +
Sbjct: 471 LQIQEETNKFGGTSQISNTCVYGGASKHTQVA--ALKKGVEIVIATPGRLIDILESGK-- 526
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312
R + +DE + G F P R++
Sbjct: 527 TNLRRVTYLVLDEADRMLDMG--FEPQIRKI 555
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 127 (49.8 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 31/119 (26%), Positives = 57/119 (47%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
II+ T+++ ++A L G AAA + +P++ R + ++ ++VAT G
Sbjct: 248 IIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLLVATDVAARG 307
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT 634
+D + +I++ P+ E Y GR GR G + +A+L+ + L R QT
Sbjct: 308 LDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLARIERYIGQT 366
Score = 66 (28.3 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 38/159 (23%), Positives = 65/159 (40%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL--LT--------GKVVVVI 219
G++ Q A+ L + D L A TG+GK+ F +PAL L+ G V+V+
Sbjct: 20 GYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQRLSSPPQGPGRGPRVLVL 79
Query: 220 SPLISLMHDQCSKLSKHGV-----TACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRL 274
+P L + +G + LG G P + + + L I P ++ L
Sbjct: 80 TPTRELAQQVTDAVRTYGAFMRVRSGAILG-GMPYH-AQLRLLSAPVDFIVATPGRLVDL 137
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLS 313
+ +R + + L +DE + G F D R++
Sbjct: 138 LD--RRSLDLSRLELLVLDEADRMLDMG--FSDDVDRIA 172
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 121 (47.7 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 23/85 (27%), Positives = 47/85 (55%)
Query: 536 GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEA 595
G+K+ + ++ +++ + + E EVVV+T G G+D ++VR ++++ P S++
Sbjct: 470 GLKSVSIHSEKSQTERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDE 529
Query: 596 YYQEAGRAGRDGHLADCVLYANLSS 620
Y + GR GR G + + N +S
Sbjct: 530 YVHQVGRVGRLGQNGTAITFINNNS 554
Score = 76 (31.8 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 38/147 (25%), Positives = 59/147 (40%)
Query: 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIP----ALLTGKV--VVVIS 220
K G+ Q + + L D L A TGSGK+ F +P AL K ++++
Sbjct: 220 KTSGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVITRALCESKTPSALILT 279
Query: 221 PLISL---MHDQCSKLSKH--GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLI 275
P L + +Q +L + L G P + LR +I P ++ +I
Sbjct: 280 PTRELAIQIENQAKELMSGLPRMKTVLLVGGLP-LPPQLYRLRQHVKVIIATPGRLLDII 338
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWG 302
K Q E GI + +DE + K G
Sbjct: 339 K--QSSVELCGIKIVVVDEADTMLKMG 363
>UNIPROTKB|J9P4L6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AAEX03026218 Ensembl:ENSCAFT00000021498 Uniprot:J9P4L6
Length = 598
Score = 108 (43.1 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 32/127 (25%), Positives = 54/127 (42%)
Query: 502 RLSMLQEPLEDGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQL-RRVHTE 557
+L ++E ++ G +++V + + + L G+ +A + Q VH+
Sbjct: 398 KLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHS- 456
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F K+ V++ T GID V +I+Y +P S Y GR GR GH V +
Sbjct: 457 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFT 516
Query: 618 LSSMPTL 624
P L
Sbjct: 517 EDDKPLL 523
Score = 89 (36.4 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 31/93 (33%), Positives = 47/93 (50%)
Query: 156 DWEVKVNSLLKKHF---GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL- 211
D E K+NS L ++ G + Q +A+ L + L A TGSGK+L F IP L+
Sbjct: 166 DQEYKINSRLLQNILDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQ 225
Query: 212 ----TGKV--VVVISP---LISLMHDQCSKLSK 235
T K ++ISP L + +H + K+S+
Sbjct: 226 LKQPTNKGFRALIISPTRELANQIHRELVKISE 258
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 133 (51.9 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 31/115 (26%), Positives = 52/115 (45%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +L D LT+++V T+K S+ +L G + + + +F K
Sbjct: 432 LDLLNATGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
++VAT G+D NV+ +I++ P +E Y GR GR G+L + N
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLGLATSFFN 546
Score = 64 (27.6 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 26/98 (26%), Positives = 43/98 (43%)
Query: 125 QKESYPGMDCNLKAES-DSLAV-----SCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNF- 177
++E + G + + E D + V +CP +E SD V + ++ G+ L +
Sbjct: 147 EQELFSGGNTGINFEKYDDIPVEVTGNNCPPHIESFSD--VAMGEII---MGNIELTRYT 201
Query: 178 -----QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
QK A+ D + A TGSGK+ F +P L
Sbjct: 202 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 239
>UNIPROTKB|E2RB54 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:ERESINT
EMBL:AAEX03006616 Ensembl:ENSCAFT00000028820 Uniprot:E2RB54
Length = 601
Score = 108 (43.1 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 32/127 (25%), Positives = 54/127 (42%)
Query: 502 RLSMLQEPLEDGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQL-RRVHTE 557
+L ++E ++ G +++V + + + L G+ +A + Q VH+
Sbjct: 401 KLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHS- 459
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F K+ V++ T GID V +I+Y +P S Y GR GR GH V +
Sbjct: 460 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFT 519
Query: 618 LSSMPTL 624
P L
Sbjct: 520 EDDKPLL 526
Score = 89 (36.4 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 31/93 (33%), Positives = 47/93 (50%)
Query: 156 DWEVKVNSLLKKHF---GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL- 211
D E K+NS L ++ G + Q +A+ L + L A TGSGK+L F IP L+
Sbjct: 169 DQEYKINSRLLQNILDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQ 228
Query: 212 ----TGKV--VVVISP---LISLMHDQCSKLSK 235
T K ++ISP L + +H + K+S+
Sbjct: 229 LKQPTNKGFRALIISPTRELANQIHRELVKISE 261
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 131 (51.2 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 30/115 (26%), Positives = 52/115 (45%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +L +D L +++V T+K S+ +L G + + + +F K
Sbjct: 430 LDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 489
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
++VAT G+D NV+ +I++ P +E Y GR GR G+L + N
Sbjct: 490 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN 544
Score = 66 (28.3 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 26/98 (26%), Positives = 44/98 (44%)
Query: 125 QKESYPGMDCNLKAES-DSLAV-----SCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNF- 177
++E + G + + E D + V +CP +E SD V++ ++ G+ L +
Sbjct: 145 EQELFSGGNTGINFEKYDDIPVEATGNNCPPHIESFSD--VEMGEII---MGNIELTRYT 199
Query: 178 -----QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
QK A+ D + A TGSGK+ F +P L
Sbjct: 200 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 237
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 131 (51.2 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 30/115 (26%), Positives = 52/115 (45%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +L +D L +++V T+K S+ +L G + + + +F K
Sbjct: 431 LDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 490
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
++VAT G+D NV+ +I++ P +E Y GR GR G+L + N
Sbjct: 491 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN 545
Score = 66 (28.3 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 26/98 (26%), Positives = 44/98 (44%)
Query: 125 QKESYPGMDCNLKAES-DSLAV-----SCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNF- 177
++E + G + + E D + V +CP +E SD V++ ++ G+ L +
Sbjct: 146 EQELFSGGNTGINFEKYDDIPVEATGNNCPPHIESFSD--VEMGEII---MGNIELTRYT 200
Query: 178 -----QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
QK A+ D + A TGSGK+ F +P L
Sbjct: 201 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 238
>FB|FBgn0036754 [details] [associations]
symbol:CG5589 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00550000074863 KO:K14779 OMA:NVMKQSG
RefSeq:NP_649009.1 ProteinModelPortal:Q9VVK8 SMR:Q9VVK8
STRING:Q9VVK8 PRIDE:Q9VVK8 EnsemblMetazoa:FBtr0075170 GeneID:39979
KEGG:dme:Dmel_CG5589 UCSC:CG5589-RA FlyBase:FBgn0036754
InParanoid:Q9VVK8 OrthoDB:EOG4QBZMN PhylomeDB:Q9VVK8
GenomeRNAi:39979 NextBio:816380 Bgee:Q9VVK8 Uniprot:Q9VVK8
Length = 594
Score = 102 (41.0 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 26/109 (23%), Positives = 50/109 (45%)
Query: 502 RLSMLQEPLEDGL---TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF 558
+L +++ + GL +++V +++ + + L G+ +A + Q F
Sbjct: 353 KLVAIRDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAF 412
Query: 559 HENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607
E + V++ T G GID V +I+Y +P + +Y GR GR G
Sbjct: 413 REGSIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAG 461
Score = 99 (39.9 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 36/153 (23%), Positives = 67/153 (43%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL-------LTGKV 215
+LL ++F H + Q +AL L + A TGSGK+L F P + TG
Sbjct: 133 NLLSRNFDHPT--PIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGLRAHKTTGLR 190
Query: 216 VVVISP---LISLMHDQCSKLSKH-GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV 271
+V++P L ++ +C++L++ G+ F+ + + Y I+ P V
Sbjct: 191 ALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRYDILVSTPNRV 250
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304
L++ L + + F +DE + + G +
Sbjct: 251 RFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQN 283
Score = 38 (18.4 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 7 SRDEVIAKLIEMGFDDSDITEAVETVGPSFN 37
S+ E K E DD DITE G S N
Sbjct: 37 SKHEEPVKSEESDKDDEDITEFRLLDGDSSN 67
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 114 (45.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 31/108 (28%), Positives = 52/108 (48%)
Query: 501 ERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG-FGVKAAAYNASLPKSQLRRVHTEFH 559
E++ QEP II+ T++ + + L FG AAA + + + V +F
Sbjct: 394 EQILRSQEP--GSKVIIFCSTKRMCDQLTRNLTRQFG--AAAIHGDKSQPERDNVLNQFR 449
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607
+ V+VAT G+D ++R +++Y +P +E Y GR GR G
Sbjct: 450 SGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAG 497
Score = 82 (33.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 37/157 (23%), Positives = 69/157 (43%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----------TGKVVVVI 219
G S+ Q ++ + D + +A TGSGK+L + IP L G ++V+
Sbjct: 177 GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVL 236
Query: 220 SP---LISLMHDQCSKLSKHGVTACF-LGSGQPDNKVEQKALRGMYSIIYVCPETVIRLI 275
SP L + + ++ K + +C L G P + RG I+ P + ++
Sbjct: 237 SPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGA-DIVVATPGRLNDIL 295
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312
+ ++R++ R I+ +DE + G F P R++
Sbjct: 296 E-MRRIS-LRQISYLVLDEADRMLDMG--FEPQIRKI 328
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 117 (46.2 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 27/87 (31%), Positives = 48/87 (55%)
Query: 536 GVKAAAYNASLPKSQLRR--VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSL 593
G+K+ + ++ KSQ+ R + E EVVV+T G G+D ++VR ++++ P S+
Sbjct: 469 GLKSISIHSE--KSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSM 526
Query: 594 EAYYQEAGRAGRDGHLADCVLYANLSS 620
+ Y + GR GR G + + N +S
Sbjct: 527 DEYVHQIGRVGRLGQNGTAITFINNNS 553
Score = 78 (32.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 39/154 (25%), Positives = 67/154 (43%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIP----ALLTGKV- 215
+N LKK G+ Q + + L D L A TGSGK+ F +P AL K
Sbjct: 214 LNHNLKKS-GYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESKTP 272
Query: 216 -VVVISPL--ISLMHDQCSKLSKHGV----TACFLGSGQPDNKVEQKALRGMYSIIYVCP 268
++++P +++ ++ +K G+ T +G G P + L+ +I P
Sbjct: 273 SALILTPTRELAIQIERQAKELMSGLPRMKTVLLVG-GLP-LPPQLYRLQQHVKVIIATP 330
Query: 269 ETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWG 302
++ +IK Q E G+ + +DE + K G
Sbjct: 331 GRLLDIIK--QSSVELCGVKIVVVDEADTMLKMG 362
>UNIPROTKB|I3LJA0 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:FP565631 EMBL:FP312903 Ensembl:ENSSSCT00000024730
Uniprot:I3LJA0
Length = 507
Score = 108 (43.1 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 32/127 (25%), Positives = 54/127 (42%)
Query: 502 RLSMLQEPLEDGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQL-RRVHTE 557
+L ++E ++ G +++V + + + L G+ +A + Q VH+
Sbjct: 307 KLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHS- 365
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F K+ V++ T GID V +I+Y +P S Y GR GR GH V +
Sbjct: 366 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFT 425
Query: 618 LSSMPTL 624
P L
Sbjct: 426 EDDKPLL 432
Score = 85 (35.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 32/93 (34%), Positives = 46/93 (49%)
Query: 156 DWEVKVNSLLKKHF---GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL- 211
D E K++S L ++ G Q +A+ L + L A TGSGK+L F IP L+
Sbjct: 75 DQEYKISSRLLQNILDAGFQLPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQ 134
Query: 212 ----TGKV--VVVISP---LISLMHDQCSKLSK 235
T K +VISP L S +H + K+S+
Sbjct: 135 LKQPTNKGFRALVISPTRELASQIHRELVKISE 167
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 112 (44.5 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
+I+V T++ I ++L G A + + +++ V +F K ++VAT G
Sbjct: 378 LIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRG 437
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607
ID N+ +++Y +P + E Y GR GR G
Sbjct: 438 IDVRNITHVLNYDYPNNSEDYIHRIGRTGRAG 469
Score = 83 (34.3 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 38/144 (26%), Positives = 64/144 (44%)
Query: 186 LAHHDCLVLAATGSGKSLCFQIPALL-----------TGKVVVVISPLISLMHDQCSKLS 234
L+ D + +A TGSGK+L + +PA++ G +V++++P L +++S
Sbjct: 160 LSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEIS 219
Query: 235 KHGVTA-----CFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR-LAESRGIA 288
K G ++ C G G P + RG + VC T RLI L+ R +
Sbjct: 220 KFGKSSRIRNTCVYG-GVPKGPQIRDLSRG----VEVCIATPGRLIDMLESGKTNLRRVT 274
Query: 289 LFAIDEVHCVSKWGHDFRPDYRRL 312
+DE + G F P R++
Sbjct: 275 YLVLDEADRMLDMG--FEPQIRKI 296
Score = 40 (19.1 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 156 DWEVKVNSLLKKHF--GHSSLKNFQKEALSAWLAHHDCLV 193
DW++ +KHF H + N + + + H V
Sbjct: 76 DWDINALPKFEKHFYKEHPDVTNRSQAEVDKFRREHSMAV 115
>UNIPROTKB|B4E132 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268804 HOVERGEN:HBG015893 UniGene:Hs.99120
HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK303638 IPI:IPI00908506
ProteinModelPortal:B4E132 SMR:B4E132 STRING:B4E132
Ensembl:ENST00000420730 Uniprot:B4E132
Length = 407
Score = 143 (55.4 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 35/126 (27%), Positives = 58/126 (46%)
Query: 496 LNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH 555
L+K + L +L D LT+++V T+K S+ +L G + + +
Sbjct: 170 LDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 229
Query: 556 TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
+F K ++VAT G+D NVR +I++ P +E Y GR GR G+L +
Sbjct: 230 HQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 289
Query: 616 ANLSSM 621
N +M
Sbjct: 290 FNEKNM 295
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 136 (52.9 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 36/124 (29%), Positives = 60/124 (48%)
Query: 496 LNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH 555
L+K + L +L D LT+++V T+K S+ +L F + A + +SQ R
Sbjct: 418 LDKRSFLLDLLNATGRDSLTLVFVETKKGADSLENFL--FQERYACTSIHGDRSQKDREE 475
Query: 556 T--EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV 613
+F + ++VAT G+D NV+ +I++ P +E Y GR GR G+L
Sbjct: 476 ALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 535
Query: 614 LYAN 617
+ N
Sbjct: 536 SFFN 539
Score = 58 (25.5 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 25/98 (25%), Positives = 43/98 (43%)
Query: 125 QKESYPGMDCNLKAES-DSLAV-----SCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNF- 177
++E + G + + E D + V +CP +E SD V++ ++ G+ L +
Sbjct: 140 EQELFSGGNAGINFEKYDDIPVEATGNNCPPHIENFSD--VEMGEII---MGNIELTRYT 194
Query: 178 -----QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
QK A+ D + A TGSG + F +P L
Sbjct: 195 RPTPVQKHAIPIIKEKRDLMACAQTGSGCTAAFLLPIL 232
>UNIPROTKB|E1C4M1 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AADN02025730 IPI:IPI00593921 ProteinModelPortal:E1C4M1
Ensembl:ENSGALT00000008815 ArrayExpress:E1C4M1 Uniprot:E1C4M1
Length = 604
Score = 114 (45.2 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 31/126 (24%), Positives = 52/126 (41%)
Query: 502 RLSMLQEPLEDGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF 558
+L+ ++E ++ G +++V + + + L G+ +A + Q V F
Sbjct: 394 KLTAMRELVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDNVVHSF 453
Query: 559 HENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL 618
K+ V++ T GID V +I+Y P S Y GR GR GH V +
Sbjct: 454 RAGKIWVLICTALLARGIDFKGVNMVINYDLPTSAVEYIHRIGRTGRAGHTGKAVTFFTE 513
Query: 619 SSMPTL 624
P L
Sbjct: 514 DDKPLL 519
Score = 80 (33.2 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 37/130 (28%), Positives = 55/130 (42%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT--------GKVVVVISP---LISLM 226
Q +A+ L + L A TGSGK+L F IP LLT G ++ISP L S
Sbjct: 186 QMQAIPVMLHGRELLASAPTGSGKTLAFCIP-LLTHLKQPMNKGFRALIISPTRELASQT 244
Query: 227 HDQCSKLSKH-GVTACFLG-SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAES 284
H + KL+ G + + + K K+ R I+ P +I L+K +
Sbjct: 245 HRELVKLADGTGFRIHMIQKASEAAKKFGPKSSRKFVDILVTTPNRLIYLLKQDPPAIDL 304
Query: 285 RGIALFAIDE 294
+ +DE
Sbjct: 305 TSVEWLVVDE 314
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 117 (46.2 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 28/123 (22%), Positives = 58/123 (47%)
Query: 495 LLNKPAERLSMLQEPLED----GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQ 550
++ E+ S+ QE L+ I++V + ++ L G+ + + +S
Sbjct: 439 IITTEEEKRSLFQEFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSD 498
Query: 551 LRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLA 610
R +F K+++++AT G+D +V + +Y +P+++E Y GR GR G +
Sbjct: 499 RERALDDFKTGKVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMG 558
Query: 611 DCV 613
+ V
Sbjct: 559 ESV 561
Score = 77 (32.2 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 45/189 (23%), Positives = 79/189 (41%)
Query: 125 QKESYPGMDCNLKAESDSLAVS---CPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEA 181
+KE++ M CN + + + C E G E+ + S+ K F + Q +A
Sbjct: 190 RKENFNVM-CNDLKDGEKRPIPNPICKFEDAFGPYPEL-MKSIKKAGFQKPT--PIQSQA 245
Query: 182 LSAWLAHHDCLVLAATGSGKSLCFQIPALL------------TGKVVVVISPLISL---M 226
L D + +A TG+GK+L + +P + G ++V++P L +
Sbjct: 246 WPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRGKRNGPGMLVLTPTRELALQV 305
Query: 227 HDQCSKLSKHGV-TACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESR 285
+CSK S G+ + C G G ++ Q ++G+ II P + L + R
Sbjct: 306 GAECSKYSYKGLKSVCIYGGGNRKGQI-QDIMKGV-DIIIATPGRLNDL--QMNNFVNLR 361
Query: 286 GIALFAIDE 294
I +DE
Sbjct: 362 SITYLVLDE 370
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 117 (46.2 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 28/123 (22%), Positives = 58/123 (47%)
Query: 495 LLNKPAERLSMLQEPLED----GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQ 550
++ E+ S+ QE L+ I++V + ++ L G+ + + +S
Sbjct: 448 IITTEEEKRSLFQEFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSD 507
Query: 551 LRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLA 610
R +F K+++++AT G+D +V + +Y +P+++E Y GR GR G +
Sbjct: 508 RERALDDFKTGKVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMG 567
Query: 611 DCV 613
+ V
Sbjct: 568 ESV 570
Score = 77 (32.2 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 45/189 (23%), Positives = 79/189 (41%)
Query: 125 QKESYPGMDCNLKAESDSLAVS---CPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEA 181
+KE++ M CN + + + C E G E+ + S+ K F + Q +A
Sbjct: 199 RKENFNVM-CNDLKDGEKRPIPNPICKFEDAFGPYPEL-MKSIKKAGFQKPT--PIQSQA 254
Query: 182 LSAWLAHHDCLVLAATGSGKSLCFQIPALL------------TGKVVVVISPLISL---M 226
L D + +A TG+GK+L + +P + G ++V++P L +
Sbjct: 255 WPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRGKRNGPGMLVLTPTRELALQV 314
Query: 227 HDQCSKLSKHGV-TACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESR 285
+CSK S G+ + C G G ++ Q ++G+ II P + L + R
Sbjct: 315 GAECSKYSYKGLKSVCIYGGGNRKGQI-QDIMKGV-DIIIATPGRLNDL--QMNNFVNLR 370
Query: 286 GIALFAIDE 294
I +DE
Sbjct: 371 SITYLVLDE 379
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 107 (42.7 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 26/102 (25%), Positives = 46/102 (45%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I++ T+K + + L G A + + + + + F K E++VAT G
Sbjct: 243 IVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARG 302
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
+D +V +I++ PQ+ E+Y GR GR G + N
Sbjct: 303 LDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLIN 344
Score = 83 (34.3 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 40/146 (27%), Positives = 69/146 (47%)
Query: 161 VNSLLK--KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT---GKV 215
+ LLK G QKEA+ L H+ + A TG+GK+ + +P L GK
Sbjct: 10 ITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRGKK 69
Query: 216 --VVVISPLISL---MHDQCSKLSKH-GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPE 269
V++++P L + D+ +KL K+ V A + GQ +E++ +RG+ + V
Sbjct: 70 AQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQA---IERQ-IRGLRQGVEVIVG 125
Query: 270 TVIRLIKPLQRLA-ESRGIALFAIDE 294
T R++ + R + I + +DE
Sbjct: 126 TPGRILDHIGRKTFPAAEIKIVILDE 151
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 107 (42.7 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 26/102 (25%), Positives = 46/102 (45%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I++ T+K + + L G A + + + + + F K E++VAT G
Sbjct: 243 IVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARG 302
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
+D +V +I++ PQ+ E+Y GR GR G + N
Sbjct: 303 LDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLIN 344
Score = 83 (34.3 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 40/146 (27%), Positives = 69/146 (47%)
Query: 161 VNSLLK--KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT---GKV 215
+ LLK G QKEA+ L H+ + A TG+GK+ + +P L GK
Sbjct: 10 ITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRGKK 69
Query: 216 --VVVISPLISL---MHDQCSKLSKH-GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPE 269
V++++P L + D+ +KL K+ V A + GQ +E++ +RG+ + V
Sbjct: 70 AQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQA---IERQ-IRGLRQGVEVIVG 125
Query: 270 TVIRLIKPLQRLA-ESRGIALFAIDE 294
T R++ + R + I + +DE
Sbjct: 126 TPGRILDHIGRKTFPAAEIKIVILDE 151
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 103 (41.3 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 28/106 (26%), Positives = 46/106 (43%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L+ + L LTII+ T + IA L G A N + + + +F +
Sbjct: 349 LAYILNELAGNLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGT 408
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGH 608
++VAT G+D +V +I+Y P + + Y GR R G+
Sbjct: 409 KSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGN 454
Score = 90 (36.7 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 38/135 (28%), Positives = 59/135 (43%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLI 223
G + K Q+E++ L D + LA TGSGK+ F IP L G + ++P
Sbjct: 138 GFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQKLLEAPQGLFCLALAPTR 197
Query: 224 SLMH---DQCSKL-SKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
L + DQ + + S GV C L G D+ + AL ++ P V+ ++ +
Sbjct: 198 ELAYQIADQFNAIGSTIGVKTCVLVGGI-DSMSQSLALAKKPHVVVGSPGRVLHHLEHTK 256
Query: 280 RLAESRGIALFAIDE 294
R I F +DE
Sbjct: 257 GF-NLRSIKYFIMDE 270
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 139 (54.0 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 31/115 (26%), Positives = 53/115 (46%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +L +GLT+I+V T++ ++ YL A + + + + R F +
Sbjct: 421 LDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGR 480
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
++VAT G+D NV +I+Y P ++ Y GR GR G+ V + N
Sbjct: 481 TSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFN 535
Score = 54 (24.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
G++ QK ++ + D + A TGSGK+ F P L
Sbjct: 188 GYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 128 (50.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 28/102 (27%), Positives = 50/102 (49%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
+I+ + + +I +YL GV+A A + + + + F E K +V+VAT G
Sbjct: 436 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 495
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
+D ++ +I+Y P+ +E Y GR GR G+ + N
Sbjct: 496 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537
Score = 65 (27.9 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL 211
+ L KK H + Q + + L+ D + +A TGSGK+L F +P ++
Sbjct: 193 LRGLKKKGIHHPT--PIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 128 (50.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 28/102 (27%), Positives = 50/102 (49%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
+I+ + + +I +YL GV+A A + + + + F E K +V+VAT G
Sbjct: 436 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 495
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
+D ++ +I+Y P+ +E Y GR GR G+ + N
Sbjct: 496 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537
Score = 65 (27.9 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL 211
+ L KK H + Q + + L+ D + +A TGSGK+L F +P ++
Sbjct: 193 LRGLKKKGIHHPT--PIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 128 (50.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 28/102 (27%), Positives = 50/102 (49%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
+I+ + + +I +YL GV+A A + + + + F E K +V+VAT G
Sbjct: 436 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 495
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
+D ++ +I+Y P+ +E Y GR GR G+ + N
Sbjct: 496 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537
Score = 65 (27.9 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL 211
+ L KK H + Q + + L+ D + +A TGSGK+L F +P ++
Sbjct: 193 LRGLKKKGIHHPT--PIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 122 (48.0 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 36/125 (28%), Positives = 59/125 (47%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR--VHTEFHENKLEVVVATIAF 572
TII+V T+K I + + G +A A + KSQ R V + F + ++VAT
Sbjct: 407 TIIFVETKKRVDEITRNISRQGWRACAIHGD--KSQQERDFVLSSFRNGRHSILVATDVA 464
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRR 629
G+D +V+ +I+Y +P + E Y GR GR + ++N + L+ R
Sbjct: 465 ARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKANDLIQVLR 524
Query: 630 SEDQT 634
+QT
Sbjct: 525 EANQT 529
Score = 74 (31.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 43/181 (23%), Positives = 75/181 (41%)
Query: 150 EVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPA 209
E E G + +N + K+ F + Q + ++ D + +A TGSGK+L + +PA
Sbjct: 158 EFEEGGFPDYVMNEIRKQGFAKPTA--IQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPA 215
Query: 210 LL-----------TGKVVVVISPLISLMHDQCSKLS------KHGVTACFLGSGQPDNKV 252
++ G + +V++P L Q +++ H C G G P +
Sbjct: 216 VVHINNQPRLERGDGPIALVLAPTRELAQ-QIQQVAIEFGSNTHVRNTCIFG-GAPKGQQ 273
Query: 253 EQKALRGMYSIIYVCPETVIRLIKPLQRLAES-RGIALFAIDEVHCVSKWGHDFRPDYRR 311
+ RG+ I+ P RLI L+R S + +DE + G F P R+
Sbjct: 274 ARDLERGV-EIVIATPG---RLIDFLERGTTSLKRCTYLVLDEADRMLDMG--FEPQIRK 327
Query: 312 L 312
+
Sbjct: 328 I 328
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 128 (50.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 28/102 (27%), Positives = 50/102 (49%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
+I+ + + +I +YL GV+A A + + + + F E K +V+VAT G
Sbjct: 454 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 513
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
+D ++ +I+Y P+ +E Y GR GR G+ + N
Sbjct: 514 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 555
Score = 65 (27.9 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL 211
+ L KK H + Q + + L+ D + +A TGSGK+L F +P ++
Sbjct: 211 LRGLKKKGIHHPT--PIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 259
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 128 (50.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 28/102 (27%), Positives = 50/102 (49%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
+I+ + + +I +YL GV+A A + + + + F E K +V+VAT G
Sbjct: 463 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 522
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
+D ++ +I+Y P+ +E Y GR GR G+ + N
Sbjct: 523 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 564
Score = 65 (27.9 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL 211
+ L KK H + Q + + L+ D + +A TGSGK+L F +P ++
Sbjct: 220 LRGLKKKGIHHPT--PIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 268
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 110 (43.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 21/85 (24%), Positives = 45/85 (52%)
Query: 536 GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEA 595
G+K+ + ++ + + + + E +VVV+T G G+D + V+ ++++ P S++
Sbjct: 470 GLKSTSVHSDKTQMERKNILKGLLEGDYDVVVSTGVLGRGLDLVGVKLVVNFDMPSSMDE 529
Query: 596 YYQEAGRAGRDGHLADCVLYANLSS 620
Y + GR GR G + + N +S
Sbjct: 530 YVHQIGRVGRLGQHGTAITFINNNS 554
Score = 83 (34.3 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 38/148 (25%), Positives = 64/148 (43%)
Query: 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV------VVIS 220
K G+ Q + + L D L A TGSGK+ F +P +L +V++
Sbjct: 220 KASGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVILRALSQSKSPSGLVLT 279
Query: 221 PL--ISLMHDQCSKLSKHGV----TACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRL 274
P +++ ++ +K G+ TA +G G P ++ LR +I P ++ +
Sbjct: 280 PTRELAIQIERQAKELMSGLPCLRTALLVG-GLPAPP-QRHRLRQRIQVIIATPGRLLDI 337
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWG 302
IK QR E I + +DE + K G
Sbjct: 338 IK--QRSVELGSIKIVVVDEADTMLKMG 363
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 113 (44.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 38/142 (26%), Positives = 66/142 (46%)
Query: 491 ERTDLLNK--PAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPK 548
E+ L+NK A+ L L + + ++++ R + +IAK L G+ AAA + +
Sbjct: 247 EQLYLVNKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQ 306
Query: 549 SQLRRVHTEFHENKLEVVVAT--IAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRD 606
+ + +F ++++V+VAT +A G+ +D L V +I+ P S Y GR R
Sbjct: 307 TVRSQTLADFKADRIQVLVATDLMARGIHVDALPV--VINLDLPTSAPVYVHRIGRTARA 364
Query: 607 GHLADCVLYANLSSMPTLLPSR 628
G + MP L R
Sbjct: 365 GAKGLAISLVCHGEMPNLTAIR 386
Score = 76 (31.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 158 EVKVNSLLKKHFGHSSLKN---FQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
E+ +N+ L+K + LK+ Q+ A+ A LA D L L+ TGSGK+ F +P L
Sbjct: 21 ELGLNAALRKALP-TRLKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLL 75
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 113 (44.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 38/142 (26%), Positives = 66/142 (46%)
Query: 491 ERTDLLNK--PAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPK 548
E+ L+NK A+ L L + + ++++ R + +IAK L G+ AAA + +
Sbjct: 247 EQLYLVNKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQ 306
Query: 549 SQLRRVHTEFHENKLEVVVAT--IAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRD 606
+ + +F ++++V+VAT +A G+ +D L V +I+ P S Y GR R
Sbjct: 307 TVRSQTLADFKADRIQVLVATDLMARGIHVDALPV--VINLDLPTSAPVYVHRIGRTARA 364
Query: 607 GHLADCVLYANLSSMPTLLPSR 628
G + MP L R
Sbjct: 365 GAKGLAISLVCHGEMPNLTAIR 386
Score = 76 (31.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 158 EVKVNSLLKKHFGHSSLKN---FQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
E+ +N+ L+K + LK+ Q+ A+ A LA D L L+ TGSGK+ F +P L
Sbjct: 21 ELGLNAALRKALP-TRLKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLL 75
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 132 (51.5 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 29/115 (25%), Positives = 53/115 (46%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +L +D LT+++V T+K ++ +L G + + + +F +
Sbjct: 464 LDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGR 523
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
++VAT G+D NV+ +I++ P +E Y GR GR G+L + N
Sbjct: 524 CPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN 578
Score = 61 (26.5 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
QK A+ + D + A TGSGK+ F +P L
Sbjct: 235 QKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVL 267
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 122 (48.0 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 35/136 (25%), Positives = 62/136 (45%)
Query: 490 FERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKS 549
F R++ NK L LQ+ +I+ + + +I +YL GV+ A+ + +S
Sbjct: 423 FVRSE--NKLVRVLECLQKTSPK--VLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQS 478
Query: 550 QLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609
F +N+ +V+VAT G+D + +I++ P+ +E Y GR GR G
Sbjct: 479 DRHAGIEAFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRK 538
Query: 610 ADCVLYANLSSMPTLL 625
+ N S ++L
Sbjct: 539 GLATTFINKKSEMSVL 554
Score = 70 (29.7 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 143 LAVSCPKE---VEIGSDWEVKV-NSLLK---KHFGHSSLKNFQKEALSAWLAHHDCLVLA 195
L +SC + IGS E+K SLL+ K G + Q + + L+ D + +A
Sbjct: 175 LGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIA 234
Query: 196 ATGSGKSLCFQIPALL 211
+TGSGK++ F +P ++
Sbjct: 235 STGSGKTMTFVLPLVM 250
>WB|WBGene00000479 [details] [associations]
symbol:cgh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0008219 "cell death"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0010467 "gene expression" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0017148 "negative regulation of translation"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 112 (44.5 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 32/133 (24%), Positives = 59/133 (44%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L+ L L+ +II+ + + +AK + G ++ + ++ RV +F +
Sbjct: 271 LNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGN 330
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622
+V + GID V +I++ +P++ E Y GR+GR GHL +
Sbjct: 331 CRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRH 390
Query: 623 TLLPSRRSEDQTK 635
TL RR E + +
Sbjct: 391 TL---RRIEQELR 400
Score = 76 (31.8 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 30/128 (23%), Positives = 57/128 (44%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL------LTGKVVVVISPL--ISLMHDQ 229
Q+ ++ L D L A G+GK+ + IP + L +VI P ++L Q
Sbjct: 70 QEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQ 129
Query: 230 -CSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLI-KPLQRLAESRGI 287
C +LSKH + +G D + + L G ++ P ++ L+ K + ++ + +
Sbjct: 130 ICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHCKTL 189
Query: 288 ALFAIDEV 295
L D++
Sbjct: 190 VLDEADKL 197
>UNIPROTKB|Q95YF3 [details] [associations]
symbol:cgh-1 "ATP-dependent RNA helicase cgh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 112 (44.5 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 32/133 (24%), Positives = 59/133 (44%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L+ L L+ +II+ + + +AK + G ++ + ++ RV +F +
Sbjct: 271 LNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGN 330
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622
+V + GID V +I++ +P++ E Y GR+GR GHL +
Sbjct: 331 CRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRH 390
Query: 623 TLLPSRRSEDQTK 635
TL RR E + +
Sbjct: 391 TL---RRIEQELR 400
Score = 76 (31.8 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 30/128 (23%), Positives = 57/128 (44%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL------LTGKVVVVISPL--ISLMHDQ 229
Q+ ++ L D L A G+GK+ + IP + L +VI P ++L Q
Sbjct: 70 QEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQ 129
Query: 230 -CSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLI-KPLQRLAESRGI 287
C +LSKH + +G D + + L G ++ P ++ L+ K + ++ + +
Sbjct: 130 ICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHCKTL 189
Query: 288 ALFAIDEV 295
L D++
Sbjct: 190 VLDEADKL 197
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 115 (45.5 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 548 KSQLRR--VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGR 605
KSQ+ R + E EVVV+T G G+D +NV+ ++++ P S++ Y + GR GR
Sbjct: 479 KSQVERRDILKGLLEGDYEVVVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRVGR 538
Query: 606 DGHLADCVLYANLSS 620
G + + N +S
Sbjct: 539 LGQNGTAITFINNNS 553
Score = 77 (32.2 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 38/154 (24%), Positives = 66/154 (42%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTG----KV- 215
+N LKK G+ Q + + L D L A TGSGK+ F +P ++ K
Sbjct: 214 LNQNLKKS-GYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRAFSEDKTP 272
Query: 216 -VVVISPL--ISLMHDQCSKLSKHGV----TACFLGSGQPDNKVEQKALRGMYSIIYVCP 268
++++P +++ ++ +K G+ T +G G P + LR +I P
Sbjct: 273 SALILTPTRELAIQIERQAKELMSGLPRMKTVLLVG-GLP-LPPQLYRLRQHVKVIIATP 330
Query: 269 ETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWG 302
++ +IK Q GI + +DE + K G
Sbjct: 331 GRLLDIIK--QSSVSLSGIKIVVVDEADTMLKMG 362
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 134 (52.2 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 36/151 (23%), Positives = 67/151 (44%)
Query: 481 HRDRDT-DRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539
H D+ ++ F + NK + +L+ +G+ II+V TR + +A+ L G +
Sbjct: 213 HTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGI-IIFVRTRNSCVELAEKLEARGYAS 271
Query: 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599
+ + + + R + KL++++AT G+D + +++Y P EAY
Sbjct: 272 SPLHGDMNQQARERAVEQLKNGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHR 331
Query: 600 AGRAGRDGHLADCVLYANLSSMPTLLPSRRS 630
GR GR G +L+ M L R+
Sbjct: 332 IGRTGRAGRTGMAILFVTSREMRMLRTIERA 362
Score = 57 (25.1 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLM 226
G+ Q ++ +A D L A TG+GK+ F +P L KV +P I ++
Sbjct: 25 GYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLL--NKVTSQTTPQILVL 79
Score = 38 (18.4 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 15/70 (21%), Positives = 30/70 (42%)
Query: 25 ITEAVETVGPSFNDAIEYILNGSVRNSKGKSVSWSSKCVTENGKTLGKRTLSSANSLGQM 84
+ EA E + F D IE+IL + ++ S + E K + + L +A ++
Sbjct: 154 LDEADEMLKMGFIDDIEWILE---HTPPQRQLALFSATMPEQIKRVANKHLKNATNISIA 210
Query: 85 RQASLLDHFQ 94
+ +D +
Sbjct: 211 ASHTTVDSIE 220
>UNIPROTKB|E1C8R1 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 UniGene:Gga.2331 CTD:1656 EMBL:AADN02058042
EMBL:AADN02058043 IPI:IPI00818395 RefSeq:NP_001006319.2
PRIDE:E1C8R1 Ensembl:ENSGALT00000040594 GeneID:419783
KEGG:gga:419783 NextBio:20822787 ArrayExpress:E1C8R1 Uniprot:E1C8R1
Length = 483
Score = 112 (44.5 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 30/107 (28%), Positives = 49/107 (45%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L+ L L+ +II+ + + +AK + G +A + + RV +F
Sbjct: 325 LNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL 384
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609
+V T F GID V +I++ +P+ E Y GR+GR GHL
Sbjct: 385 CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHL 431
Score = 77 (32.2 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 33/129 (25%), Positives = 61/129 (47%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL--LTGK------VVVVISPLISLMHDQ 229
Q+E++ L+ D L A G+GKS + IP L L K +V+V + ++L Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 230 -CSKLSKH-GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGI 287
C ++SKH G +G + + + L ++ P ++ LIK + +A+ +
Sbjct: 183 ICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIK--KGVAKVEHV 240
Query: 288 ALFAIDEVH 296
+ +DE +
Sbjct: 241 QMIVLDEAN 249
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 119 (46.9 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 30/114 (26%), Positives = 57/114 (50%)
Query: 495 LLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG-VKAAAYNASLPKSQLRR 553
L ++PA LS+ G TII+ ++KE + + + G +KAA + +L + Q
Sbjct: 419 LSDRPAILLSLCTRVFNQGGTIIFCRSKKEVHRL-RIIFGLSDLKAAELHGNLSQEQRFD 477
Query: 554 VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607
+F + ++ ++A+ G+D + V+ +I+Y P ++ Y GR R G
Sbjct: 478 SLQQFRDGQVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAG 531
Score = 75 (31.5 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 46/184 (25%), Positives = 79/184 (42%)
Query: 123 EEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNS-LLK--KHFGHSSLKNFQK 179
++Q++S +K + + E E+ + E+ ++ LLK + G S Q
Sbjct: 159 QQQQQSNKQTTDKIKVLQSNRKLKKIVEEELPTFEELHLSRPLLKAVQKLGFSQPTPIQA 218
Query: 180 EALSAWLAHHDCLVLAATGSGKSLCFQIPAL--LTGKV-------VVVISPLISLMHDQC 230
+A+ L D L A+TGSGK+ F +P L L + V+++ P L QC
Sbjct: 219 KAIPLALNGKDILASASTGSGKTAAFLLPVLERLLFRDSEYRAIRVLILLPTRELAL-QC 277
Query: 231 SKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESR 285
+ ++ +T+C + G NK ++ LR ++ P RLI L +
Sbjct: 278 QSVMENLAQFSNITSCLIVGGL-SNKAQEVELRKSPDVVIATPG---RLI---DHLLNAH 330
Query: 286 GIAL 289
GI L
Sbjct: 331 GIGL 334
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 125 (49.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 33/130 (25%), Positives = 61/130 (46%)
Query: 498 KPAERLSMLQEPLEDGL--TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH 555
KP ++ L E L+ +I+ +K+ I +YL V+A + + + +
Sbjct: 458 KPEAKIVYLLECLQKTPPPVLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAI 517
Query: 556 TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
F E K +V+VAT G+D ++ +I++ P+ +E Y GR GR G+ +
Sbjct: 518 KAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTF 577
Query: 616 ANLSSMPTLL 625
N ++ +LL
Sbjct: 578 INKNNTESLL 587
Score = 67 (28.6 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL 211
++ LL+K G Q + L L+ D + +A TGSGK+L F +P +L
Sbjct: 234 IDVLLEK--GIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMVL 282
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 128 (50.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 28/102 (27%), Positives = 50/102 (49%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
+I+ + + +I +YL GV+A A + + + + F E K +V+VAT G
Sbjct: 435 LIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 494
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
+D ++ +I+Y P+ +E Y GR GR G+ + N
Sbjct: 495 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 536
Score = 63 (27.2 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL 211
+ L KK H + Q + + L+ D + +A TGSGK+L F +P ++
Sbjct: 192 LRGLKKKGILHPT--PIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 240
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 128 (50.1 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 28/102 (27%), Positives = 50/102 (49%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
+I+ + + +I +YL GV+A A + + + + F E K +V+VAT G
Sbjct: 436 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 495
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
+D ++ +I+Y P+ +E Y GR GR G+ + N
Sbjct: 496 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537
Score = 63 (27.2 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL 211
+ L KK H + Q + + L+ D + +A TGSGK+L F +P ++
Sbjct: 193 LRGLKKKGILHPT--PIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 128 (50.1 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 28/102 (27%), Positives = 50/102 (49%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
+I+ + + +I +YL GV+A A + + + + F E K +V+VAT G
Sbjct: 436 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 495
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
+D ++ +I+Y P+ +E Y GR GR G+ + N
Sbjct: 496 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537
Score = 63 (27.2 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL 211
+ L KK H + Q + + L+ D + +A TGSGK+L F +P ++
Sbjct: 193 LRGLKKKGILHPT--PIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 103 (41.3 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 46/185 (24%), Positives = 77/185 (41%)
Query: 147 CPKEVE--IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLC 204
CPK ++ + +KV + LKKH + Q +A+ A ++ D + +A TGSGK++
Sbjct: 352 CPKPIKTWVQCGISMKVLNALKKH-NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIA 410
Query: 205 FQIPAL-----------LTGKVVVVISPLISL---MHDQCSKLSKHGV--TACFLGSGQP 248
F +P G + V+++P L + +C K SK C G
Sbjct: 411 FLLPMFRHILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGI 470
Query: 249 DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ-RLAESRGIALFAIDEVHCVSKWGHDFRP 307
++ + RG II P +I ++ R+ R + IDE + G F P
Sbjct: 471 SEQIAELK-RGA-EIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMG--FEP 526
Query: 308 DYRRL 312
R+
Sbjct: 527 QVMRI 531
Score = 94 (38.1 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 25/106 (23%), Positives = 44/106 (41%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +L E G II+V ++ + K L + + + + + +F
Sbjct: 595 LEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGA 654
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGH 608
++VAT G+D + +++Y P E Y AGR GR G+
Sbjct: 655 CRLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGN 700
>UNIPROTKB|A8MTP9 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000242486
HOVERGEN:HBG051332 EMBL:AC091199 HGNC:HGNC:20038
PharmGKB:PA134904836 ChiTaRS:DDX52 NextBio:42007 IPI:IPI00394982
ProteinModelPortal:A8MTP9 SMR:A8MTP9 STRING:A8MTP9 PRIDE:A8MTP9
Ensembl:ENST00000394367 ArrayExpress:A8MTP9 Bgee:A8MTP9
Uniprot:A8MTP9
Length = 491
Score = 100 (40.3 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 30/127 (23%), Positives = 54/127 (42%)
Query: 502 RLSMLQEPLEDGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQL-RRVHTE 557
+L ++E ++ G +++V + + + L G+ +A + Q VH+
Sbjct: 291 KLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS- 349
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F K+ V++ T GID V +I+Y +P S Y GR GR G+ + +
Sbjct: 350 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFT 409
Query: 618 LSSMPTL 624
P L
Sbjct: 410 EDDKPLL 416
Score = 89 (36.4 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 31/93 (33%), Positives = 45/93 (48%)
Query: 156 DWEVKVNSLLKKHF---GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT 212
D E K+NS L ++ G Q +A+ L + L A TGSGK+L F IP L+
Sbjct: 59 DQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQ 118
Query: 213 -------GKVVVVISP---LISLMHDQCSKLSK 235
G ++ISP L S +H + K+S+
Sbjct: 119 LKQPANKGFRALIISPTRELASQIHRELIKISE 151
>MGI|MGI:1925644 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1925644 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:CH466556 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AK080767 EMBL:AK133545 EMBL:AL645615 EMBL:BC029094
IPI:IPI00336965 RefSeq:NP_084372.2 UniGene:Mm.280544
ProteinModelPortal:Q8K301 SMR:Q8K301 STRING:Q8K301
PhosphoSite:Q8K301 PaxDb:Q8K301 PRIDE:Q8K301
Ensembl:ENSMUST00000049257 GeneID:78394 KEGG:mmu:78394
InParanoid:Q3UZY9 NextBio:348796 Bgee:Q8K301 CleanEx:MM_DDX52
Genevestigator:Q8K301 GermOnline:ENSMUSG00000020677 Uniprot:Q8K301
Length = 598
Score = 101 (40.6 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 31/127 (24%), Positives = 54/127 (42%)
Query: 502 RLSMLQEPLEDGL---TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQL-RRVHTE 557
+L ++E ++ G +++V + + + L G+ +A + Q VH+
Sbjct: 400 KLLAMRELVKKGFKPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS- 458
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F K+ V++ T GID V +I+Y +P S Y GR GR G+ V +
Sbjct: 459 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFT 518
Query: 618 LSSMPTL 624
P L
Sbjct: 519 EDDKPLL 525
Score = 90 (36.7 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 33/93 (35%), Positives = 46/93 (49%)
Query: 156 DWEVKVNSLLKKHF---GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL- 211
D E K+NS L ++ G Q +A+ L + L A TGSGK+L F IP L+
Sbjct: 168 DQEYKINSRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQ 227
Query: 212 ----TGKV--VVVISP---LISLMHDQCSKLSK 235
T K +VISP L S +H + K+S+
Sbjct: 228 LKQPTNKGFRALVISPTRELASQIHRELIKISE 260
>UNIPROTKB|Q5ZKB9 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
Length = 483
Score = 112 (44.5 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 30/107 (28%), Positives = 49/107 (45%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L+ L L+ +II+ + + +AK + G +A + + RV +F
Sbjct: 325 LNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL 384
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609
+V T F GID V +I++ +P+ E Y GR+GR GHL
Sbjct: 385 CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHL 431
Score = 76 (31.8 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 33/127 (25%), Positives = 60/127 (47%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL--LTGK------VVVVISPLISLMHDQ 229
Q+E++ L+ D L A G+GKS + IP L L K +V+V + ++L Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 230 -CSKLSKH-GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGI 287
C ++SKH G +G + + + L ++ P ++ LIK + +A+ +
Sbjct: 183 ICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIK--KGVAKVEHV 240
Query: 288 ALFAIDE 294
+ +DE
Sbjct: 241 QMIVLDE 247
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 124 (48.7 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 27/102 (26%), Positives = 49/102 (48%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
+I+ + + +I +YL GV+A A + + + + F E K +V+VAT G
Sbjct: 287 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFKEGKKDVLVATDVASKG 346
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
+D ++ +++Y P+ +E Y GR GR G + N
Sbjct: 347 LDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFIN 388
Score = 63 (27.2 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL 211
+ L KK H + Q + + L+ D + +A TGSGK+L F +P ++
Sbjct: 49 LKGLKKKGIVHPT--PIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPIIM 97
>UNIPROTKB|F1NQA6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 EMBL:AADN02025730
IPI:IPI00822952 Ensembl:ENSGALT00000039070 ArrayExpress:F1NQA6
Uniprot:F1NQA6
Length = 603
Score = 114 (45.2 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 31/126 (24%), Positives = 52/126 (41%)
Query: 502 RLSMLQEPLEDGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF 558
+L+ ++E ++ G +++V + + + L G+ +A + Q V F
Sbjct: 393 KLTAMRELVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDNVVHSF 452
Query: 559 HENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL 618
K+ V++ T GID V +I+Y P S Y GR GR GH V +
Sbjct: 453 RAGKIWVLICTALLARGIDFKGVNMVINYDLPTSAVEYIHRIGRTGRAGHTGKAVTFFTE 512
Query: 619 SSMPTL 624
P L
Sbjct: 513 DDKPLL 518
Score = 76 (31.8 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 37/130 (28%), Positives = 56/130 (43%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT--------GKVVVVISP---LISLM 226
Q +A+ L + L A TGSGK+L F IP LLT G ++ISP L S
Sbjct: 186 QMQAIPVMLHGRELLASAPTGSGKTLAFCIP-LLTHLKQPMNKGFRALIISPTRELASQT 244
Query: 227 HDQCSKLSKH-GVTACFLG-SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAES 284
H + KL+ G + + + K K+ R + I+ P +I L+K +
Sbjct: 245 HRELVKLADGTGFRIHMIQKASEAAKKFGPKSSR-KFDILVTTPNRLIYLLKQDPPAIDL 303
Query: 285 RGIALFAIDE 294
+ +DE
Sbjct: 304 TSVEWLVVDE 313
>GENEDB_PFALCIPARUM|PF08_0096 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003724 "RNA helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 132 (51.5 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 31/121 (25%), Positives = 59/121 (48%)
Query: 497 NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHT 556
NK L++L E +GLTI++V T+++ I ++L + A + + + R
Sbjct: 631 NKCNYLLNLLAEN-NNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDKSQDERERALK 689
Query: 557 EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616
F ++VAT G+D N++ +I++ P +++ Y GR GR G++ +
Sbjct: 690 LFKRGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFV 749
Query: 617 N 617
N
Sbjct: 750 N 750
Score = 62 (26.9 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 21/89 (23%), Positives = 42/89 (47%)
Query: 151 VEIGSDWEVKVNSLLK---KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQI 207
+E D + +N LL K + QK +L+ + +D + +A TGSGK+ + +
Sbjct: 359 IETFDDPSLNLNELLLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLL 418
Query: 208 PALLTGKVVVVISPLISLMHDQCSKLSKH 236
P + +++ P ++Q +K S +
Sbjct: 419 PII---NHMLINDPPKHTYYEQNNKTSNY 444
>UNIPROTKB|Q8IAU1 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0003724 "RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 132 (51.5 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 31/121 (25%), Positives = 59/121 (48%)
Query: 497 NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHT 556
NK L++L E +GLTI++V T+++ I ++L + A + + + R
Sbjct: 631 NKCNYLLNLLAEN-NNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDKSQDERERALK 689
Query: 557 EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616
F ++VAT G+D N++ +I++ P +++ Y GR GR G++ +
Sbjct: 690 LFKRGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFV 749
Query: 617 N 617
N
Sbjct: 750 N 750
Score = 62 (26.9 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 21/89 (23%), Positives = 42/89 (47%)
Query: 151 VEIGSDWEVKVNSLLK---KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQI 207
+E D + +N LL K + QK +L+ + +D + +A TGSGK+ + +
Sbjct: 359 IETFDDPSLNLNELLLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLL 418
Query: 208 PALLTGKVVVVISPLISLMHDQCSKLSKH 236
P + +++ P ++Q +K S +
Sbjct: 419 PII---NHMLINDPPKHTYYEQNNKTSNY 444
>UNIPROTKB|I3LRT7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00620000087942 EMBL:CU929824
Ensembl:ENSSSCT00000031627 OMA:VGDERTM Uniprot:I3LRT7
Length = 290
Score = 136 (52.9 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 39/163 (23%), Positives = 79/163 (48%)
Query: 453 KEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLED 512
+ ++ EFL+++ + VA G+ G RD ++ + +K E+L + + D
Sbjct: 56 QRLAGEFLKSNYLF---VAVGQVGGAC----RDVQQTILQVGQYSK-REKLVEILRNIGD 107
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
T+++V T+K+ IA +LC + + + + + + +F K V+VAT
Sbjct: 108 ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVA 167
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
G+D NV+ +I++ P +++ Y GR GR G+ + +
Sbjct: 168 ARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISF 210
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 123 (48.4 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 33/122 (27%), Positives = 55/122 (45%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
+I+ + + I +YL GV+A A + + + F K +V+VAT G
Sbjct: 401 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKG 460
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS-SMPTLLPSRRSEDQT 634
+D +++ +I+Y P +E Y GR GR G + N + S TLL + +
Sbjct: 461 LDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEA 520
Query: 635 KQ 636
KQ
Sbjct: 521 KQ 522
Score = 66 (28.3 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
Q + L LA D + +A TGSGK+L F +P ++ ++ P+
Sbjct: 173 QVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPI 217
>UNIPROTKB|P54824 [details] [associations]
symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
"Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
Length = 481
Score = 112 (44.5 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 30/107 (28%), Positives = 49/107 (45%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L+ L L+ +II+ + + +AK + G +A + + RV +F
Sbjct: 324 LNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL 383
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609
+V T F GID V +I++ +P+ E Y GR+GR GHL
Sbjct: 384 CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHL 430
Score = 75 (31.5 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 34/127 (26%), Positives = 60/127 (47%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL--LTGK------VVVVISPLISLMHDQ 229
Q+E++ L+ D L A G+GKS + IP L L K +V+V + ++L Q
Sbjct: 122 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQ 181
Query: 230 -CSKLSKH-GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGI 287
C ++SKH G +G + + + L ++ P ++ LIK + +A+ I
Sbjct: 182 ICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIK--KGVAKVDHI 239
Query: 288 ALFAIDE 294
+ +DE
Sbjct: 240 QMIVLDE 246
>ZFIN|ZDB-GENE-070912-83 [details] [associations]
symbol:ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
6" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-070912-83 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 InterPro:IPR014014 PROSITE:PS51195
EMBL:CR759774 IPI:IPI00505165 ProteinModelPortal:E7FD91
Ensembl:ENSDART00000087382 Bgee:E7FD91 Uniprot:E7FD91
Length = 485
Score = 109 (43.4 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 30/107 (28%), Positives = 49/107 (45%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L+ L L+ +II+ + + +AK + G +A + + RV +F
Sbjct: 327 LNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL 386
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609
+V T F GID V +I++ +P+ E Y GR+GR GHL
Sbjct: 387 CRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRIGRSGRFGHL 433
Score = 78 (32.5 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 46/178 (25%), Positives = 77/178 (43%)
Query: 130 PGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHF--GHSSLKNFQKEALSAWLA 187
P D +K SD V+ K E D+ +K LL F G Q+E++ L+
Sbjct: 80 PPKDLRMKT-SD---VTATKGNEF-EDYCLK-RELLMGIFEMGWEKPSPIQEESIPIALS 133
Query: 188 HHDCLVLAATGSGKSLCFQIPAL---------LTGKVVVVISPLISLMHDQ-CSKLSKH- 236
D L A G+GKS + IP L + VV+V + ++L Q C ++SKH
Sbjct: 134 GRDILARAKNGTGKSGAYLIPLLERIDLKKDSIQAAVVIVPTRELALQVSQICIQVSKHM 193
Query: 237 GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDE 294
G +G + + + L ++ P ++ LIK + +A+ + + +DE
Sbjct: 194 GGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIK--KGVAKVGQVQMIVLDE 249
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 98 (39.6 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 48/210 (22%), Positives = 82/210 (39%)
Query: 123 EEQKESYPGMDCNLKAESDSL---AVSCPKEVEIGSDWEVKVNSL-LKKHFGHSSLKNFQ 178
EE K P L+A D + + CPK V S + ++ + G+ + Q
Sbjct: 386 EELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQ 445
Query: 179 KEALSAWLAHHDCLVLAATGSGKSLCFQIPA---------LLTGK--VVVVISPLISL-- 225
+A+ A + D + +A TGSGK++ F +P L TG+ + ++++P L
Sbjct: 446 AQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAV 505
Query: 226 -MHDQCSKLSKH-GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKP-LQRLA 282
+ +C K + AC G P RG I+ P +I ++ R+
Sbjct: 506 QIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGA-EIVVCTPGRMIDVLSANAGRVT 564
Query: 283 ESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312
+DE + G F P R+
Sbjct: 565 NLHRCTYLVLDEADRMFDLG--FEPQVMRI 592
Score = 97 (39.2 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 24/115 (20%), Positives = 50/115 (43%)
Query: 501 ERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE 560
E L L D T+++V ++ ++ L G + + + + +++
Sbjct: 657 ELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKA 716
Query: 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
+V++AT G+D +++ +++Y P +E Y GR GR GH V +
Sbjct: 717 GVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTF 771
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 132 (51.5 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 29/115 (25%), Positives = 53/115 (46%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +L +D LT+++V T+K ++ +L G + + + +F +
Sbjct: 480 LDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGR 539
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
++VAT G+D NV+ +I++ P +E Y GR GR G+L + N
Sbjct: 540 CPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYN 594
Score = 58 (25.5 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
QK A+ D + A TGSGK+ F +P L
Sbjct: 250 QKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVL 282
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 139 (54.0 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 30/107 (28%), Positives = 51/107 (47%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
E+GLTI++ T++ ++A YL G A A + + + + F ++VAT
Sbjct: 442 ENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILVATA 501
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
G+D NV +I+Y P ++ Y GR GR G++ + N
Sbjct: 502 VAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFN 548
Score = 50 (22.7 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
QK ++ A D + A TGSGK+ F P L
Sbjct: 213 QKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVL 245
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 132 (51.5 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 31/136 (22%), Positives = 65/136 (47%)
Query: 485 DTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544
D +++ + D +K + L +L+ + T+++V T++ IA +LC + + +
Sbjct: 503 DVEQTVVQVDQYSKRDQLLELLRATGNER-TMVFVETKRSADFIATFLCQEKISTTSIHG 561
Query: 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAG 604
+ + + ++F V+VAT G+D V+ ++++ P S++ Y GR G
Sbjct: 562 DREQREREKALSDFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTG 621
Query: 605 RDGHLADCVLYANLSS 620
R G+ V + N S
Sbjct: 622 RCGNTGRAVSFFNPES 637
Score = 58 (25.5 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL 210
QK + A D + A TGSGK+ F +P L
Sbjct: 304 QKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 336
>FB|FBgn0086130 [details] [associations]
symbol:KH1 "KH1" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0016063 "rhodopsin
biosynthetic process" evidence=IMP] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0006200 GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
EMBL:AY058512 RefSeq:NP_608544.1 UniGene:Dm.4179 SMR:Q9VPT3
EnsemblMetazoa:FBtr0078009 GeneID:33254 KEGG:dme:Dmel_CG3561
UCSC:CG3561-RA CTD:33254 FlyBase:FBgn0086130 InParanoid:Q9VPT3
OMA:ILCSAET OrthoDB:EOG4X69R7 GenomeRNAi:33254 NextBio:782677
Uniprot:Q9VPT3
Length = 536
Score = 120 (47.3 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 42/148 (28%), Positives = 66/148 (44%)
Query: 479 SPHRDR---DTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLS--IAKYLC 533
SPH R + F R ++PA LS+++ L +I V + K T S ++ +L
Sbjct: 329 SPHLHRLMSHVTQKFLRLSKADRPATLLSLVKHDLAKRRPLI-VFSNKSTTSDFVSIFLN 387
Query: 534 GFGVKAAAYNAS-LPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQS 592
GV N L K +L R +F +V+ T G+D R ++++ +P
Sbjct: 388 NSGVNCLNLNGDMLMKIRLGRFE-QFQNGHCDVLSTTDVGSRGLDTTRARHVVNFDFPLH 446
Query: 593 LEAYYQEAGRAGRDGHLADCVLYANLSS 620
+ Y GR GR G++ D L NL S
Sbjct: 447 VSDYIHRCGRIGRVGNM-DKALVTNLIS 473
Score = 67 (28.6 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL--LTGKVVV 217
L+ G L QK+ + + CL+ A TG GK++ + +P + L K VV
Sbjct: 123 LRVELGIKLLTGIQKQGMPVVHGNEHCLIAAETGCGKTITYLLPIVDKLLQKEVV 177
>UNIPROTKB|Q9Y2R4 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AF077033 EMBL:AK001652 EMBL:AK093661 EMBL:AC091199
EMBL:BC041785 EMBL:AJ010840 IPI:IPI00032423 RefSeq:NP_008941.2
UniGene:Hs.590937 PDB:3DKP PDBsum:3DKP ProteinModelPortal:Q9Y2R4
SMR:Q9Y2R4 IntAct:Q9Y2R4 STRING:Q9Y2R4 PhosphoSite:Q9Y2R4
DMDM:296439375 SWISS-2DPAGE:Q9Y2R4 PaxDb:Q9Y2R4 PRIDE:Q9Y2R4
Ensembl:ENST00000349699 GeneID:11056 KEGG:hsa:11056 UCSC:uc002hoh.2
GeneCards:GC17M035969 HGNC:HGNC:20038 MIM:612500 neXtProt:NX_Q9Y2R4
PharmGKB:PA134904836 InParanoid:Q9Y2R4 PhylomeDB:Q9Y2R4
ChiTaRS:DDX52 EvolutionaryTrace:Q9Y2R4 GenomeRNAi:11056
NextBio:42007 ArrayExpress:Q9Y2R4 Bgee:Q9Y2R4 CleanEx:HS_DDX52
Genevestigator:Q9Y2R4 GermOnline:ENSG00000141141 Uniprot:Q9Y2R4
Length = 599
Score = 100 (40.3 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 30/127 (23%), Positives = 54/127 (42%)
Query: 502 RLSMLQEPLEDGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQL-RRVHTE 557
+L ++E ++ G +++V + + + L G+ +A + Q VH+
Sbjct: 399 KLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS- 457
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F K+ V++ T GID V +I+Y +P S Y GR GR G+ + +
Sbjct: 458 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFT 517
Query: 618 LSSMPTL 624
P L
Sbjct: 518 EDDKPLL 524
Score = 89 (36.4 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 31/93 (33%), Positives = 45/93 (48%)
Query: 156 DWEVKVNSLLKKHF---GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT 212
D E K+NS L ++ G Q +A+ L + L A TGSGK+L F IP L+
Sbjct: 167 DQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQ 226
Query: 213 -------GKVVVVISP---LISLMHDQCSKLSK 235
G ++ISP L S +H + K+S+
Sbjct: 227 LKQPANKGFRALIISPTRELASQIHRELIKISE 259
>UNIPROTKB|E1BDM8 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
Length = 483
Score = 112 (44.5 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 30/107 (28%), Positives = 49/107 (45%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L+ L L+ +II+ + + +AK + G +A + + RV +F
Sbjct: 325 LNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL 384
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609
+V T F GID V +I++ +P+ E Y GR+GR GHL
Sbjct: 385 CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHL 431
Score = 74 (31.1 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 33/127 (25%), Positives = 60/127 (47%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL--LTGK------VVVVISPLISLMHDQ 229
Q+E++ L+ D L A G+GKS + IP L L K +V+V + ++L Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 230 -CSKLSKH-GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGI 287
C ++SKH G +G + + + L ++ P ++ LIK + +A+ +
Sbjct: 183 ICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIK--KGVAKVDHV 240
Query: 288 ALFAIDE 294
+ +DE
Sbjct: 241 QMIVLDE 247
>UNIPROTKB|E2RR01 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
Length = 483
Score = 112 (44.5 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 30/107 (28%), Positives = 49/107 (45%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L+ L L+ +II+ + + +AK + G +A + + RV +F
Sbjct: 325 LNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL 384
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609
+V T F GID V +I++ +P+ E Y GR+GR GHL
Sbjct: 385 CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHL 431
Score = 74 (31.1 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 33/127 (25%), Positives = 60/127 (47%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL--LTGK------VVVVISPLISLMHDQ 229
Q+E++ L+ D L A G+GKS + IP L L K +V+V + ++L Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 230 -CSKLSKH-GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGI 287
C ++SKH G +G + + + L ++ P ++ LIK + +A+ +
Sbjct: 183 ICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIK--KGVAKVDHV 240
Query: 288 ALFAIDE 294
+ +DE
Sbjct: 241 QMIVLDE 247
>UNIPROTKB|P26196 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
STRING:P26196 PhosphoSite:P26196 DMDM:116241327
DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
Uniprot:P26196
Length = 483
Score = 112 (44.5 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 30/107 (28%), Positives = 49/107 (45%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L+ L L+ +II+ + + +AK + G +A + + RV +F
Sbjct: 325 LNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL 384
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609
+V T F GID V +I++ +P+ E Y GR+GR GHL
Sbjct: 385 CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHL 431
Score = 74 (31.1 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 33/127 (25%), Positives = 60/127 (47%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL--LTGK------VVVVISPLISLMHDQ 229
Q+E++ L+ D L A G+GKS + IP L L K +V+V + ++L Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 230 -CSKLSKH-GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGI 287
C ++SKH G +G + + + L ++ P ++ LIK + +A+ +
Sbjct: 183 ICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIK--KGVAKVDHV 240
Query: 288 ALFAIDE 294
+ +DE
Sbjct: 241 QMIVLDE 247
>UNIPROTKB|F1SAJ5 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
Uniprot:F1SAJ5
Length = 483
Score = 112 (44.5 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 30/107 (28%), Positives = 49/107 (45%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L+ L L+ +II+ + + +AK + G +A + + RV +F
Sbjct: 325 LNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL 384
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609
+V T F GID V +I++ +P+ E Y GR+GR GHL
Sbjct: 385 CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHL 431
Score = 74 (31.1 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 33/127 (25%), Positives = 60/127 (47%)
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL--LTGK------VVVVISPLISLMHDQ 229
Q+E++ L+ D L A G+GKS + IP L L K +V+V + ++L Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 230 -CSKLSKH-GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGI 287
C ++SKH G +G + + + L ++ P ++ LIK + +A+ +
Sbjct: 183 ICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIK--KGVAKVDHV 240
Query: 288 ALFAIDE 294
+ +DE
Sbjct: 241 QMIVLDE 247
WARNING: HSPs involving 185 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 774 727 0.00086 121 3 11 22 0.40 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 435
No. of states in DFA: 623 (66 KB)
Total size of DFA: 396 KB (2194 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 58.18u 0.14s 58.32t Elapsed: 00:00:02
Total cpu time: 58.23u 0.14s 58.37t Elapsed: 00:00:02
Start: Sat May 11 01:20:04 2013 End: Sat May 11 01:20:06 2013
WARNINGS ISSUED: 2