BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004098
(774 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359487624|ref|XP_002279606.2| PREDICTED: ATP-dependent DNA helicase Q-like SIM-like [Vitis
vinifera]
Length = 893
Score = 1051 bits (2717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/801 (67%), Positives = 636/801 (79%), Gaps = 37/801 (4%)
Query: 1 MSGSGTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVRNSKGKSVSWSS 60
M G+ D+VIA+LIEMGF+ S +TEA+E VGPS +DAIE+ILNG R+S+G S + S
Sbjct: 1 MDGNNVHSDQVIAELIEMGFEFSAVTEAIEVVGPSLDDAIEFILNGPHRSSRGASSN--S 58
Query: 61 KCVTENGKTLGKRTLSSANSLGQMRQASLLDHFQSGNRQKRGKRN-VGDDVSVSGSVVSP 119
KC T GK L K L S++SL QMRQ+S+ +H Q R KR + N V + VS GS + P
Sbjct: 59 KCPTSTGKALDKTALISSHSLDQMRQSSITEHLQPVGRSKRIRTNSVYNAVSPYGSEMLP 118
Query: 120 SIVEEQKESYPGMDCNLKAESD--SLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNF 177
+EEQ S+ G CNLKA S+ +L V C +E+EIG DW +VNSLL KHFG SLK+F
Sbjct: 119 GHLEEQVLSFSGEGCNLKAASELSALPVCCQQELEIGKDWVQRVNSLLHKHFGILSLKSF 178
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHG 237
QKEALSAWLAH DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQC KL+KHG
Sbjct: 179 QKEALSAWLAHQDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLAKHG 238
Query: 238 VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHC 297
V+ACFLGSGQPD+ VEQKA+ GMY IIYVCPETV+RLIKPLQRLAE+RGIALFAIDEVHC
Sbjct: 239 VSACFLGSGQPDSSVEQKAMSGMYEIIYVCPETVLRLIKPLQRLAENRGIALFAIDEVHC 298
Query: 298 VSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKG 357
VSKWGHDFRPDYRRLSVLRENF A +LK L+FDIP+MALTATATI VREDIL SL MSK
Sbjct: 299 VSKWGHDFRPDYRRLSVLRENFSACSLKFLEFDIPIMALTATATICVREDILHSLCMSKE 358
Query: 358 TKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDL--- 414
TK VLTSFFR NLRFSVKHS+TSS +SY+KDF +L+D+YTK K +K++ Q+L
Sbjct: 359 TKIVLTSFFRSNLRFSVKHSRTSSPSSYEKDFSELMDVYTKSKVG-KKKQKIFSQELDDA 417
Query: 415 DDQSDTSSSSSMSEESRISP----NIGDGYY---DDEDVGNSPMG------KEMSVEFLE 461
D S +S+ S+SE R+SP N GDGY+ DDE + G ++MSVE+LE
Sbjct: 418 SDDSTSSADRSLSEADRMSPSDVENNGDGYFGENDDEANSSQENGSAASKQRQMSVEYLE 477
Query: 462 ND-----SVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLN---KPAERLSMLQEPLEDG 513
N+ SVDDWDV+CGEF G P T+ +F ++ L+ K ERL++L+ PLE G
Sbjct: 478 NEVDLFQSVDDWDVSCGEFSGQPP-----TEHTFGSSETLDPSMKLDERLTLLKGPLEQG 532
Query: 514 LTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFG 573
TIIYVPTRKETL+IAKYLC GVKAAAYNA LPKS LRRVH EFH+N L+VVVATIAFG
Sbjct: 533 PTIIYVPTRKETLNIAKYLCRCGVKAAAYNAKLPKSHLRRVHKEFHDNALQVVVATIAFG 592
Query: 574 MGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQ 633
MGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG LADC+LYANLS +PTLLPS+RSEDQ
Sbjct: 593 MGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLSRVPTLLPSQRSEDQ 652
Query: 634 TKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEAN 693
TKQAY+MLSDCFRYGMNT+CCRAK LVEYFGEDF H+ C LCDVCV+GPPE +NLK+EA+
Sbjct: 653 TKQAYKMLSDCFRYGMNTTCCRAKTLVEYFGEDFCHQSCILCDVCVNGPPEKQNLKDEAD 712
Query: 694 ILMQVIAAYNEQSNSMDD--DDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLW 751
M VIAA+ +S+ +DD D IY +++Q+FMD+PNL+M VS+IREQ QK+ ATDLLW
Sbjct: 713 TFMHVIAAHYGKSSFVDDLYDGVIYGDVEQQRFMDKPNLRMLVSRIREQFQKFAATDLLW 772
Query: 752 WRGLARIMENKGYIREGDDRV 772
WRGLARIME+KGYIREG+DR+
Sbjct: 773 WRGLARIMEDKGYIREGEDRI 793
>gi|296089683|emb|CBI39502.3| unnamed protein product [Vitis vinifera]
Length = 1537
Score = 1020 bits (2637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/788 (67%), Positives = 617/788 (78%), Gaps = 52/788 (6%)
Query: 1 MSGSGTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVRNSKGKSVSWSS 60
M G+ D+VIA+LIEMGF+ S +TEA+E VGPS +DAIE+ILNG R+S+G S + S
Sbjct: 1 MDGNNVHSDQVIAELIEMGFEFSAVTEAIEVVGPSLDDAIEFILNGPHRSSRGASSN--S 58
Query: 61 KCVTENGKTLGKRTLSSANSLGQMRQASLLDHFQSGNRQKRGKRN-VGDDVSVSGSVVSP 119
KC T GK L K L S++SL QMRQ+S+ +H Q R KR + N V + VS GS + P
Sbjct: 59 KCPTSTGKALDKTALISSHSLDQMRQSSITEHLQPVGRSKRIRTNSVYNAVSPYGSEMLP 118
Query: 120 SIVEEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQK 179
E +L V C +E+EIG DW +VNSLL KHFG SLK+FQK
Sbjct: 119 -------------------ELSALPVCCQQELEIGKDWVQRVNSLLHKHFGILSLKSFQK 159
Query: 180 EALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVT 239
EALSAWLAH DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQC KL+KHGV+
Sbjct: 160 EALSAWLAHQDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLAKHGVS 219
Query: 240 ACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299
ACFLGSGQPD+ VEQKA+ GMY IIYVCPETV+RLIKPLQRLAE+RGIALFAIDEVHCVS
Sbjct: 220 ACFLGSGQPDSSVEQKAMSGMYEIIYVCPETVLRLIKPLQRLAENRGIALFAIDEVHCVS 279
Query: 300 KWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTK 359
KWGHDFRPDYRRLSVLRENF A +LK L+FDIP+MALTATATI VREDIL SL MSK TK
Sbjct: 280 KWGHDFRPDYRRLSVLRENFSACSLKFLEFDIPIMALTATATICVREDILHSLCMSKETK 339
Query: 360 FVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDL---DD 416
VLTSFFR NLRFSVKHS+TSS +SY+KDF +L+D+YTK K +K++ Q+L D
Sbjct: 340 IVLTSFFRSNLRFSVKHSRTSSPSSYEKDFSELMDVYTKSKVG-KKKQKIFSQELDDASD 398
Query: 417 QSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGK--EMSVEFLEND-----SVDDWD 469
S +S+ S+SE R+SP+ DV N+ K +MSVE+LEN+ SVDDWD
Sbjct: 399 DSTSSADRSLSEADRMSPS---------DVENNAASKQRQMSVEYLENEVDLFQSVDDWD 449
Query: 470 VACGEFYGHSPHRDRDTDRSFERTDLLN---KPAERLSMLQEPLEDGLTIIYVPTRKETL 526
V+CGEF G P T+ +F ++ L+ K ERL++L+ PLE G TIIYVPTRKETL
Sbjct: 450 VSCGEFSGQPP-----TEHTFGSSETLDPSMKLDERLTLLKGPLEQGPTIIYVPTRKETL 504
Query: 527 SIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH 586
+IAKYLC GVKAAAYNA LPKS LRRVH EFH+N L+VVVATIAFGMGIDKLNVRRIIH
Sbjct: 505 NIAKYLCRCGVKAAAYNAKLPKSHLRRVHKEFHDNALQVVVATIAFGMGIDKLNVRRIIH 564
Query: 587 YGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFR 646
YGWPQSLEAYYQEAGRAGRDG LADC+LYANLS +PTLLPS+RSEDQTKQAY+MLSDCFR
Sbjct: 565 YGWPQSLEAYYQEAGRAGRDGKLADCILYANLSRVPTLLPSQRSEDQTKQAYKMLSDCFR 624
Query: 647 YGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQS 706
YGMNT+CCRAK LVEYFGEDF H+ C LCDVCV+GPPE +NLK+EA+ M VIAA+ +S
Sbjct: 625 YGMNTTCCRAKTLVEYFGEDFCHQSCILCDVCVNGPPEKQNLKDEADTFMHVIAAHYGKS 684
Query: 707 NSMDD--DDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGY 764
+ +DD D IY +++Q+FMD+PNL+M VS+IREQ QK+ ATDLLWWRGLARIME+KGY
Sbjct: 685 SFVDDLYDGVIYGDVEQQRFMDKPNLRMLVSRIREQFQKFAATDLLWWRGLARIMEDKGY 744
Query: 765 IREGDDRV 772
IREG+DR+
Sbjct: 745 IREGEDRI 752
>gi|224123798|ref|XP_002330211.1| predicted protein [Populus trichocarpa]
gi|222871667|gb|EEF08798.1| predicted protein [Populus trichocarpa]
Length = 1048
Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/788 (64%), Positives = 607/788 (77%), Gaps = 27/788 (3%)
Query: 9 DEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSV-RNSKGK-SVSWSSKCVTEN 66
D + KLIEMGF+ +AV+ VGPS + A++Y+LNGS RN +G +++ SS+C T +
Sbjct: 8 DGTVEKLIEMGFESCAAEQAVKEVGPSLDKAVDYLLNGSSSRNCEGSGAMTSSSECFTSS 67
Query: 67 GKTLGKRTLSSANSLGQMRQASLLDHFQSGNRQKRGKRNVG-DDVSVSGSVVSPSIVEEQ 125
GKR LS + G+ RQ+S+L+HF+ KRG + DV VSGS V P V
Sbjct: 68 KS--GKRMLSGSAYSGRKRQSSILEHFRLPRSVKRGMLSSDVSDVLVSGSKVLPLSVNGC 125
Query: 126 KESYPGMDCN-LKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSA 184
+ES +DC ++ D L V C +EV G DWE + N +L++ FG+SSLK FQKEAL+A
Sbjct: 126 EESCVSVDCGKVENAVDGLPVWCKEEVGFGLDWEERANRVLRERFGYSSLKGFQKEALAA 185
Query: 185 WLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLG 244
W AH DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQC KLSKHGV+ACFLG
Sbjct: 186 WAAHQDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLSKHGVSACFLG 245
Query: 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304
SGQPD+ VE+KA+RGMY IIYVCPET+ RLIKPLQ LAESRGI LFAIDEVHCVSKWGH+
Sbjct: 246 SGQPDSSVEKKAMRGMYDIIYVCPETISRLIKPLQGLAESRGITLFAIDEVHCVSKWGHN 305
Query: 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTS 364
FRP YR+LSVLRENF A NLK LKF+IPLMALTATATI VR D+LK L MSK TK VLTS
Sbjct: 306 FRPSYRQLSVLRENFSACNLKFLKFNIPLMALTATATIPVRGDVLKVLSMSKETKVVLTS 365
Query: 365 FFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSS 424
FFRPNLRFSVKH +TSS +SY K+ LI IY KKK+ EK+ S+I ++LDD SD+S+ +
Sbjct: 366 FFRPNLRFSVKHCRTSSPSSYGKNLSHLIGIYAGKKKSNEKKWSSIAEELDDCSDSSADN 425
Query: 425 SMSEESRISPNIGDGYYDD-------------EDVGNSPMGKEMSVEFLENDS-----VD 466
S+S+ SPN + DD E+ + KEMS+E+LEND VD
Sbjct: 426 SISDGDVSSPNDMNRIEDDCCDVDGDELNLTKENGLTASREKEMSIEYLENDVDVFHIVD 485
Query: 467 DWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETL 526
DWDVACGEF G SP +D+ +S E D +K +R +LQ PLE+G TIIYVPTRK+TL
Sbjct: 486 DWDVACGEFIGQSPCKDQYICKSSETVDPSSKIEDRSKLLQAPLEEGATIIYVPTRKQTL 545
Query: 527 SIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH 586
SI +YLCGFGVKAAAYNASLPKS LR+VH EFHEN ++VVVAT+AFGMGIDK N+RRIIH
Sbjct: 546 SITEYLCGFGVKAAAYNASLPKSHLRQVHKEFHENLIQVVVATVAFGMGIDKSNIRRIIH 605
Query: 587 YGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFR 646
YGWPQSLEAYYQEAGRAGRDG LA+CVLYANLS P+LLPS+RSE QTK A++MLSDCFR
Sbjct: 606 YGWPQSLEAYYQEAGRAGRDGKLAECVLYANLSRTPSLLPSKRSEAQTKHAFKMLSDCFR 665
Query: 647 YGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYN--E 704
YGMNTSCCRAK LVEYFGEDFS+EKC LCDVCV+GPPEM++LKEEA+ILM+VIAAY+ E
Sbjct: 666 YGMNTSCCRAKTLVEYFGEDFSYEKCLLCDVCVNGPPEMQDLKEEADILMKVIAAYHLSE 725
Query: 705 QSNSMDDD-DGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKG 763
Q++S D DG + K Q+ + +PNL+MFV+KI+EQ QK+ TD LWW+GLARIME KG
Sbjct: 726 QNHSFDSSYDGKCNDTKSQRAVQKPNLRMFVTKIKEQYQKFWTTDQLWWQGLARIMEGKG 785
Query: 764 YIREGDDR 771
YIREGD++
Sbjct: 786 YIREGDEK 793
>gi|356574959|ref|XP_003555610.1| PREDICTED: ATP-dependent DNA helicase Q-like SIM-like [Glycine max]
Length = 854
Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/787 (62%), Positives = 581/787 (73%), Gaps = 56/787 (7%)
Query: 1 MSGSGTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVRNSKGKSVSWSS 60
M G+ TS +VIA++I MGFD +DI EA++ GPS A+E+ILN + R K + +
Sbjct: 1 MDGNKTSSAQVIAEMIGMGFDYTDIMEAIKVAGPSIPSAVEHILNSTARTPKLHAHNGRK 60
Query: 61 KCVTENGKTLGKRTLSSANSLGQMRQASLLDHFQSGNRQKRGKRNVGDDVSVSGSVVSPS 120
K V L K+ S Q+RQ+ + DHF S N K +G D + P
Sbjct: 61 KTV------LRKQPFRSCR---QVRQSKIFDHFHS-NDAKEESPQMGVDPN-------PI 103
Query: 121 IVEEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKE 180
++ E E+ ++++I DWE +V+ L++KHFG SSLK FQKE
Sbjct: 104 VLSEPFEA--------------------QDLDIAYDWEQRVSLLMQKHFGFSSLKTFQKE 143
Query: 181 ALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTA 240
ALSAWLAH DCLVLAATGSGKSLCFQIPALL+GKVVVVISPLISLMHDQC KL++HG++A
Sbjct: 144 ALSAWLAHKDCLVLAATGSGKSLCFQIPALLSGKVVVVISPLISLMHDQCLKLTRHGISA 203
Query: 241 CFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300
CFLGSGQPD+ VEQKA+ G+YSI+Y+CPETV+RLI+PLQ+LAES GIALFAIDEVHCVSK
Sbjct: 204 CFLGSGQPDDTVEQKAMGGLYSIVYICPETVLRLIEPLQKLAESHGIALFAIDEVHCVSK 263
Query: 301 WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKF 360
WGHDFRPDYRRLSVLRENF A+ LKSLKFDIPLMALTATAT +VREDILKSLHMSK T
Sbjct: 264 WGHDFRPDYRRLSVLRENFSASKLKSLKFDIPLMALTATATKRVREDILKSLHMSKETNV 323
Query: 361 VLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDT 420
VLTSFFR NLRF VKHS+T S+ASY KDF +LI +Y +K+ EK I D D S++
Sbjct: 324 VLTSFFRSNLRFMVKHSRT-SQASYAKDFHELIQVYGRKQNMTGNEKYFISDDSDHVSNS 382
Query: 421 SSSSSMSEESRISP--NIGDGYYDDEDV---GNSP---MGKEMSVEFLEND-----SVDD 467
S +SS+S+ +SP N D Y D ++ GN+ G+E+SV+FLEND SVD+
Sbjct: 383 SDASSISDTDSVSPDDNQDDYAYKDINIMHSGNTDDFLTGRELSVDFLENDVDAFQSVDN 442
Query: 468 WDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLS 527
DV CGEF H++ + E D KP RL L++PLE G IIYVPTRKETL
Sbjct: 443 SDVTCGEFCVQPAHKEWELS---ETIDPPKKPEGRLKFLKKPLEQGPAIIYVPTRKETLR 499
Query: 528 IAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHY 587
IAKYLC FGVKAAAYNA LPK LRRVH EFHEN LEV+VATIAFGMGIDK NVRRIIHY
Sbjct: 500 IAKYLCKFGVKAAAYNAGLPKLHLRRVHEEFHENTLEVIVATIAFGMGIDKSNVRRIIHY 559
Query: 588 GWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRY 647
GWPQSLE YYQEAGRAGRDG LADC+LYANL++ P+LLPSR+SEDQ KQAY MLSDCFRY
Sbjct: 560 GWPQSLETYYQEAGRAGRDGKLADCILYANLANKPSLLPSRKSEDQMKQAYIMLSDCFRY 619
Query: 648 GMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSN 707
GMNTSCCRAKILVEYFGEDFSH+KC LCDVC+DGPP+ +N+KEEA IL+Q I A+NE +N
Sbjct: 620 GMNTSCCRAKILVEYFGEDFSHQKCLLCDVCIDGPPQRQNVKEEACILLQTIGAHNECNN 679
Query: 708 SMD--DDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYI 765
+D DD I+ K + +RPNL++ V KIR+Q QK+L TD+LWWRGLARI+E KGYI
Sbjct: 680 YLDCSYDDDIHFHSKHRGLRERPNLQILVGKIRQQFQKFLTTDILWWRGLARILEVKGYI 739
Query: 766 REGDDRV 772
EGDD+
Sbjct: 740 GEGDDKT 746
>gi|255542712|ref|XP_002512419.1| DNA helicase, putative [Ricinus communis]
gi|223548380|gb|EEF49871.1| DNA helicase, putative [Ricinus communis]
Length = 803
Score = 910 bits (2353), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/704 (65%), Positives = 536/704 (76%), Gaps = 40/704 (5%)
Query: 93 FQSGNRQKRGKRNVGD----DVSVSGSVVSPSIVEEQKESYPGMDCNLKAESDSLAVSCP 148
Q+ N+ R KR D +V +S S VSP+ V+E E + P
Sbjct: 11 IQAVNKVGRPKRIRSDNNVPEVPISKSGVSPNHVDEVNE----------------YSTVP 54
Query: 149 KE-VEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQI 207
KE +++G DWE + N LL KHFG+ SLK+FQKEAL+AW+AH DCLVLAATGSGKSLCFQI
Sbjct: 55 KEELDVGLDWESRANGLLHKHFGYLSLKSFQKEALAAWVAHQDCLVLAATGSGKSLCFQI 114
Query: 208 PALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVC 267
PALLTGKVVVVISPLISLMHDQC KLS+HG++ACFLGSGQPD+ VE+KA+RGMY IIYVC
Sbjct: 115 PALLTGKVVVVISPLISLMHDQCLKLSRHGISACFLGSGQPDSAVEKKAMRGMYDIIYVC 174
Query: 268 PETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
PETV RLIKPLQ LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLR+NF NL L
Sbjct: 175 PETVFRLIKPLQGLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRKNFSIGNLPFL 234
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKK 387
KFDIPLMALTATATIQV+EDI+KSL MSK K VLTSFFRPNL+FSVKHS+TSS +SY+K
Sbjct: 235 KFDIPLMALTATATIQVQEDIIKSLSMSKERKTVLTSFFRPNLQFSVKHSRTSSPSSYEK 294
Query: 388 DFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEE------SRISPNIGDGYY 441
DF +LIDIY +K+ G K + + ++D S ++ S+SEE IS
Sbjct: 295 DFRKLIDIYVRKRNAGTKTQRMFSKVVNDCSGNAADQSLSEEDVFSSSGMISTEDECSDV 354
Query: 442 DDEDV-------GNSPMGKEMSVEFLEND-----SVDDWDVACGEFYGHSPHRDRDTDRS 489
DD++V + GK +S+++LEND +VDDWDVA GEF G SP D D +
Sbjct: 355 DDDEVTLTKENGSTASEGKRLSIDYLENDVDIFQNVDDWDVAFGEFCGQSPCNDWDVHKL 414
Query: 490 FERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKS 549
+ D ERL +LQEPL +G TIIYVPTRKETL IA YLC FG+KAAAYNASLPKS
Sbjct: 415 PKTVDPPCAAEERLKLLQEPLREGPTIIYVPTRKETLRIANYLCDFGLKAAAYNASLPKS 474
Query: 550 QLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609
LRRVH EFHEN LEVVVATIAFGMGIDK NVRRIIHYGWPQSLEAYYQEAGRAGRDG
Sbjct: 475 HLRRVHKEFHENMLEVVVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKP 534
Query: 610 ADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSH 669
A+C+LYANLS P+LLPS+RSE Q KQAY+MLSDCFRYGMNTS CRAK LV+YFGEDF+
Sbjct: 535 AECILYANLSRAPSLLPSKRSEVQAKQAYKMLSDCFRYGMNTSNCRAKTLVQYFGEDFTS 594
Query: 670 EKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDD-DGIYSGIKKQKFMDRP 728
EKC LCDVCV GPP+M N KEEA+ILMQ+IAA++ QS+S+D D + +K + + RP
Sbjct: 595 EKCLLCDVCVRGPPKMHNWKEEADILMQIIAAHHGQSSSLDGAYDDTFGDLKSHRSVQRP 654
Query: 729 NLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDDRV 772
NL+MFVSK+REQSQK+ D LWWRGL RIME KGYIREGDD++
Sbjct: 655 NLRMFVSKLREQSQKFWGKDFLWWRGLVRIMEGKGYIREGDDKI 698
>gi|449454155|ref|XP_004144821.1| PREDICTED: ATP-dependent DNA helicase Q-like SIM-like [Cucumis
sativus]
Length = 821
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/719 (63%), Positives = 544/719 (75%), Gaps = 29/719 (4%)
Query: 71 GKRTLSSANSLGQMRQASLLDHFQSGNRQKRGKRNVGDDVSVSGSVVSPSIVEEQKESYP 130
GKRT S MRQ+S+LDHF NR KR K V S VS VE+ +E
Sbjct: 6 GKRTQSQV----LMRQSSILDHFSLTNRGKRSKTEAEPVVPFSEPEVSHYPVEDTQEHQR 61
Query: 131 GMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHD 190
+ L+ ESDS + P+E + DWE K+N +LKKHFG+ LK FQKEAL AWL H D
Sbjct: 62 RV---LQNESDSYLIDGPQEPDTLLDWEKKLNRVLKKHFGYPFLKKFQKEALEAWLNHQD 118
Query: 191 CLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN 250
CLVLAATGSGKS+CFQIPALLTGKVVVVISPLISLMHDQC KL+KHGV+ACFLGSGQPD+
Sbjct: 119 CLVLAATGSGKSICFQIPALLTGKVVVVISPLISLMHDQCLKLAKHGVSACFLGSGQPDS 178
Query: 251 KVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYR 310
VE+KA+ G YSIIYVCPETV+RLI+PLQ+LAE+RGIALFAIDEVHCVSKWGHDFRPDYR
Sbjct: 179 SVEKKAMGGAYSIIYVCPETVLRLIQPLQKLAETRGIALFAIDEVHCVSKWGHDFRPDYR 238
Query: 311 RLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNL 370
RLS+LRENF ++ L LK+++PLMALTATAT+QVREDILKSL MSK TK +LTSFFRPNL
Sbjct: 239 RLSILRENFSSSTLNFLKYNVPLMALTATATVQVREDILKSLCMSKETKIILTSFFRPNL 298
Query: 371 RFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEES 430
RFSVKHS+TSS +SY+KDF LID+Y ++ G K+++ I D D S+ + E
Sbjct: 299 RFSVKHSRTSSPSSYRKDFSNLIDVYAGNRRFGNKKQTIISHKPDSVLDCSTDCGLYEVD 358
Query: 431 RISPN------------IGDGYYDDEDVGNSPMGKEMSVEFLEND-----SVDDWDVACG 473
+ISPN + +E + + + MSVE+LEN+ SVDDWDVA G
Sbjct: 359 KISPNDLEDTDDSDSDKDDEVDSSEECLPSPSKERTMSVEYLENEVDVFQSVDDWDVAYG 418
Query: 474 EFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLC 533
EF G D D D E+ +LL+K ER QE L+ G TIIYVPTRKETLSI+K+LC
Sbjct: 419 EFCGQLVCEDTDVDT--EKINLLDKADERQKSSQESLDQGPTIIYVPTRKETLSISKFLC 476
Query: 534 GFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSL 593
GVKAAAYNASLPKS LR VH +FHEN +EVVVATIAFGMGIDK NVRRIIHYGWPQSL
Sbjct: 477 QCGVKAAAYNASLPKSHLRMVHKDFHENNVEVVVATIAFGMGIDKSNVRRIIHYGWPQSL 536
Query: 594 EAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSC 653
EAYYQEAGRAGRDG LADC+LYANL+ +P+LLPSRRSE+QT QAYRMLSDCFRYGMNTS
Sbjct: 537 EAYYQEAGRAGRDGKLADCILYANLTRIPSLLPSRRSEEQTNQAYRMLSDCFRYGMNTSN 596
Query: 654 CRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDD 713
CRA+ LVEYFGE F EKC +CDVCV GPP M+NLKEE++ILMQ IAA++ + S D+
Sbjct: 597 CRAQKLVEYFGETFDREKCLMCDVCVKGPPNMQNLKEESDILMQAIAAHHVKEASYDNFS 656
Query: 714 GIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDDRV 772
YS + K + ++PNL+ FVSK+REQ+ K+ ATD+LWWRGLARI+E KGY++EGD ++
Sbjct: 657 --YSDV-KHRSREKPNLRFFVSKVREQTLKFAATDILWWRGLARILEYKGYLKEGDHKI 712
>gi|449521040|ref|XP_004167539.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q-like
SIM-like [Cucumis sativus]
Length = 821
Score = 903 bits (2333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/719 (63%), Positives = 544/719 (75%), Gaps = 29/719 (4%)
Query: 71 GKRTLSSANSLGQMRQASLLDHFQSGNRQKRGKRNVGDDVSVSGSVVSPSIVEEQKESYP 130
GKRT S MRQ+S+LDHF NR KR K V S VS VE+ +E
Sbjct: 6 GKRTQSQV----LMRQSSILDHFSLTNRGKRSKTEAEPVVPFSEPEVSHYPVEDTQEHQR 61
Query: 131 GMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHD 190
+ L+ ESDS + P+E + DWE K+N +LKKHFG+ LK FQKEAL AWL H D
Sbjct: 62 RV---LQNESDSYLIDGPQEPDTLLDWEKKLNRVLKKHFGYPFLKKFQKEALEAWLNHQD 118
Query: 191 CLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN 250
CLVLAATGSGKS+CFQIPALLTGKVVVVISPLISLMHDQC KL+KHGV+ACFLGSGQPD+
Sbjct: 119 CLVLAATGSGKSICFQIPALLTGKVVVVISPLISLMHDQCLKLAKHGVSACFLGSGQPDS 178
Query: 251 KVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYR 310
VE+KA+ G YSIIYVCPETV+RLI+PLQ+LAE+RGIALFAIDEVHCVSKWGHDFRPDYR
Sbjct: 179 SVEKKAMGGAYSIIYVCPETVLRLIQPLQKLAETRGIALFAIDEVHCVSKWGHDFRPDYR 238
Query: 311 RLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNL 370
RLS+LRENF ++ L LK+++PLMALTATAT+QVREDILKSL MSK TK +LTS FRPNL
Sbjct: 239 RLSILRENFSSSTLNFLKYNVPLMALTATATVQVREDILKSLCMSKETKIILTSXFRPNL 298
Query: 371 RFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEES 430
RFSVKHS+TSS +SY+KDF +LID+Y ++ G K+++ I D D S+ + E
Sbjct: 299 RFSVKHSRTSSPSSYRKDFSKLIDVYAGNRRFGNKKQTIISHKPDSVLDCSTDCGLYEVD 358
Query: 431 RISPN------------IGDGYYDDEDVGNSPMGKEMSVEFLEND-----SVDDWDVACG 473
+ISPN + +E + + + MSVE+LEN+ SVDDWDVA G
Sbjct: 359 KISPNDLEDTDDSDSDKDDEVDSSEECLPSPSKERTMSVEYLENEVDVFQSVDDWDVAYG 418
Query: 474 EFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLC 533
EF G D D D E+ +LL+K ER QE L+ G TIIYVPTRKETLSI+K+LC
Sbjct: 419 EFCGQLVCEDTDVDT--EKINLLDKADERQKSSQESLDQGPTIIYVPTRKETLSISKFLC 476
Query: 534 GFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSL 593
GVKAAAYNASLPKS LR VH +FHEN +EVVVATIAFGMGIDK NVRRIIHYGWPQSL
Sbjct: 477 QCGVKAAAYNASLPKSHLRMVHKDFHENNVEVVVATIAFGMGIDKSNVRRIIHYGWPQSL 536
Query: 594 EAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSC 653
EAYYQEAGRAGRDG LADC+LYANL+ +P+LLPSRRSE+QT QAYRMLSDCFRYGMNTS
Sbjct: 537 EAYYQEAGRAGRDGKLADCILYANLTRIPSLLPSRRSEEQTNQAYRMLSDCFRYGMNTSN 596
Query: 654 CRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDD 713
CRA+ LVEYFGE F EKC +CDVCV GPP M+NLKEE++ILMQ IAA++ + S D+
Sbjct: 597 CRAQKLVEYFGETFDREKCLMCDVCVKGPPNMQNLKEESDILMQAIAAHHVKEASYDNFS 656
Query: 714 GIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDDRV 772
YS + K + ++PNL+ FVSK+REQ+ K+ ATD+LWWRGLARI+E KGY++EGD ++
Sbjct: 657 --YSDV-KHRSREKPNLRFFVSKVREQTLKFAATDILWWRGLARILEYKGYLKEGDHKI 712
>gi|297808755|ref|XP_002872261.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297318098|gb|EFH48520.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 855
Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/782 (59%), Positives = 573/782 (73%), Gaps = 45/782 (5%)
Query: 7 SRDEVIAKLIEMGFDDSDITEAVETVG-PSFNDAIEYILNGSVRNSKGKSVSWSSKCVTE 65
S D V+ KL+EMGF+ D +AV+ VG S +DA+EYIL G R G S SS C
Sbjct: 4 SSDHVVMKLVEMGFEKLDALDAVKAVGGKSCDDAVEYILKGHDRT--GGSAPASSLCSIG 61
Query: 66 NGKTLGKRTLSSANSLGQMRQASLLDHFQSGNRQKRGKRNVG-DDVSVSGSVVSPSIVEE 124
+ K LGKR + S+ S G RQ+SLLDHF+S ++ K+ G +V+ VS + E+
Sbjct: 62 SNKILGKRAMPSSFSSGSKRQSSLLDHFRSVDQNKKKGNTFGIAEVNSQLETVSDTSKEQ 121
Query: 125 QKESYPGMDCNLKAESDSLAVSCPKEVEIG-------SDWEVKVNSLLKKHFGHSSLKNF 177
K P L SC E E+ S WE +VNS+L+ FG SSL++F
Sbjct: 122 IKSLAPVF----------LESSCFPETELSNGCSEASSTWETRVNSILQNRFGISSLRSF 171
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHG 237
Q+EALS W+AH DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQC KLS+H
Sbjct: 172 QREALSTWVAHEDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLSRHR 231
Query: 238 VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHC 297
V+ACFLGSGQ D +E+KA++GMY IIYVCPETV+RLIKPLQ+LA++ GIALFAIDE HC
Sbjct: 232 VSACFLGSGQLDTCIEEKAMQGMYQIIYVCPETVVRLIKPLQKLAKTHGIALFAIDEAHC 291
Query: 298 VSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKG 357
VSKWGHDFRP YRRLSVLRENF A+NL+ L++D+P+MALTATAT+ V+EDI++SLH+SK
Sbjct: 292 VSKWGHDFRPHYRRLSVLRENFCASNLEFLEYDVPIMALTATATVHVQEDIVESLHLSKE 351
Query: 358 TKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQ 417
T+ VLTSFFRPNL+FSVKHS+T +SY KDF LID+Y++KKK+ K+ + I ++ ++Q
Sbjct: 352 TQTVLTSFFRPNLQFSVKHSRTKFASSYAKDFQNLIDLYSEKKKSTGKKLAVISRESEEQ 411
Query: 418 SDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND-----SVDDWDVAC 472
+D + + + + NS GKE+S E+LE++ SVDDWDVAC
Sbjct: 412 TDFGYHDAQNIHETDYDEDEEDQENSLAKKNSSNGKELSEEYLEDETDIFQSVDDWDVAC 471
Query: 473 GEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYL 532
GEF P +LL+ P S Q+ LE GLTIIYVPTRKE+++IAKYL
Sbjct: 472 GEFCAMPP------------CELLDVPIP--SEKQKDLE-GLTIIYVPTRKESVNIAKYL 516
Query: 533 CGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQS 592
CG G+KAAAYNASLPK LR+VH +FHENKL+VVVATIAFGMGIDK NVR+IIHYGWPQS
Sbjct: 517 CGVGLKAAAYNASLPKKHLRQVHQDFHENKLQVVVATIAFGMGIDKKNVRKIIHYGWPQS 576
Query: 593 LEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTS 652
LEAYYQEAGRAGRDG LA+CVLYA+LS PTLLPSRRS++QT+QAY+MLSDCFRYGM TS
Sbjct: 577 LEAYYQEAGRAGRDGELAECVLYADLSRAPTLLPSRRSKEQTEQAYKMLSDCFRYGMKTS 636
Query: 653 CCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAY---NEQSNSM 709
CRAKILVEYFGEDFS +KC LCDVC +GPPE N++EEAN+L QVI A+ N+ ++
Sbjct: 637 QCRAKILVEYFGEDFSSKKCNLCDVCTEGPPEQVNVREEANLLFQVINAFHVDNDSEHAP 696
Query: 710 DDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGD 769
+D G+ + K++K +PNL F+SKIREQ QK+ TD LWW+GLARIME KGYI+E D
Sbjct: 697 YEDYGLGNS-KQKKLSHKPNLLFFISKIREQCQKFKETDCLWWKGLARIMEAKGYIKEMD 755
Query: 770 DR 771
++
Sbjct: 756 NK 757
>gi|34391859|gb|AAO52679.1| putative DNA helicase RecQsim [Brassica napus]
Length = 880
Score = 884 bits (2285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/798 (58%), Positives = 574/798 (71%), Gaps = 77/798 (9%)
Query: 6 TSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVRNSKGKSVSWSSKCVTE 65
+S DEV+ KL+EMGF D EAV+ VG S DA+EY+L + G S SS C +
Sbjct: 6 SSSDEVVMKLVEMGFAKLDALEAVKAVGKSCGDAVEYLLKRT-----GGFSSASSLCSAK 60
Query: 66 NG--KTLGKRTLSSANSLGQMRQASLLDHFQSGNRQKRGKRNVGDDVSVSGSVVSPSIVE 123
N KTLGKR L S+ S G MRQ+SL DHF+S +R K+ + G V V PS E
Sbjct: 61 NNSNKTLGKRALPSSFSSGSMRQSSLFDHFRSVDRNKKKGDSFGTAV-----VSDPS--E 113
Query: 124 EQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALS 183
E ++S P + S+ + WE+ VNS+L+ FG SSL++FQ+EALS
Sbjct: 114 EMRKSPPLVFTESSGCSEGSST-----------WEISVNSILRNRFGISSLRSFQREALS 162
Query: 184 AWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFL 243
W+AH DCLVLAATGSGKSLCFQ+PALLTGKVVVVISPLISLMHDQC KLS H V+ACFL
Sbjct: 163 TWVAHKDCLVLAATGSGKSLCFQLPALLTGKVVVVISPLISLMHDQCLKLSTHKVSACFL 222
Query: 244 GSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303
GSGQ DN++EQKA++GMY IIYVCPETV+RLIKPLQ+L ++ GIALFAIDE HCVSKWGH
Sbjct: 223 GSGQLDNRIEQKAMQGMYQIIYVCPETVVRLIKPLQKLPKTHGIALFAIDEAHCVSKWGH 282
Query: 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT 363
DFRPDYR+LS+LRENF ++L L++D+P+MALTATAT V+EDIL+SLH+SK TK VLT
Sbjct: 283 DFRPDYRKLSMLRENFCVSSLAFLEYDVPIMALTATATAHVQEDILQSLHLSKETKTVLT 342
Query: 364 SFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSS 423
SFFRPNL+FSVKHS+T S ASY KDF LID+Y+ K+K K+ + I Q + QSD
Sbjct: 343 SFFRPNLQFSVKHSRTKSAASYAKDFQNLIDLYSGKRKATGKKLAVISQGSEGQSDF--- 399
Query: 424 SSMSEESRISPNIGDGYYDDEDV-------------------GNSPMGKEMSVEFLEND- 463
GY+D E++ NS GKEMS E+LE++
Sbjct: 400 ---------------GYHDAENIHETDNDDDDEEDPENSVAKQNSSNGKEMSEEYLEDET 444
Query: 464 ----SVDDWDVACGEFYGHSPHRDRDT-DRSFERTDLLNKPAERLSMLQEPLEDGLTIIY 518
SVDDWDVACGEF SP D D S ++T ++ S + LE G TIIY
Sbjct: 445 DIFQSVDDWDVACGEFCAMSPCDVLDIPDPSGKQTP--DESGHNHSNKAKNLE-GPTIIY 501
Query: 519 VPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDK 578
VPTRKE++++AKYL G G+KAAAYNA LPK LR+VH E+HE+KL+VVVATIAFGMGIDK
Sbjct: 502 VPTRKESVNVAKYLSGIGLKAAAYNARLPKKHLRQVHQEYHEDKLQVVVATIAFGMGIDK 561
Query: 579 LNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAY 638
NVR+IIHYGWPQSLEAYYQEAGRAGRDG LA+CVLYANLS +PTLLPSRRS++QT+QAY
Sbjct: 562 KNVRKIIHYGWPQSLEAYYQEAGRAGRDGELAECVLYANLSRVPTLLPSRRSKEQTEQAY 621
Query: 639 RMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQV 698
+MLSDCFRYGMNTS CRAKILVEYFGEDF+ +KC LCDVC GPPE N++EEAN+L QV
Sbjct: 622 KMLSDCFRYGMNTSQCRAKILVEYFGEDFTSKKCNLCDVCTKGPPEQVNVREEANLLFQV 681
Query: 699 IAAYNEQSNSMDD-----DDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWR 753
I+A++ Q+ + + D G+ + K++K D+PNL F+++IREQS+K++ D LWW+
Sbjct: 682 ISAFHLQAENSSEHASCQDYGLGNS-KQKKLSDKPNLFFFINRIREQSKKFMEIDRLWWK 740
Query: 754 GLARIMENKGYIREGDDR 771
GLARIME +GYI+E D++
Sbjct: 741 GLARIMEAEGYIKEMDNK 758
>gi|357441723|ref|XP_003591139.1| ATP-dependent DNA helicase Q4 [Medicago truncatula]
gi|355480187|gb|AES61390.1| ATP-dependent DNA helicase Q4 [Medicago truncatula]
Length = 903
Score = 881 bits (2276), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/817 (58%), Positives = 567/817 (69%), Gaps = 66/817 (8%)
Query: 1 MSGSGTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVRNSKGK--SVSW 58
M + S D+VI++++EMGF S I EA++ VGPS +E+I N S +S + S +
Sbjct: 1 MDSNNKSSDQVISEMVEMGFQHSQILEAIKVVGPSIPSVVEHIFNTSNSSSSNREPSTTH 60
Query: 59 SSKCVTENGKTLGKRTLSSANSLGQMRQASLLDHFQSGNRQKRGKRNVGDDVSVSGSVVS 118
+K ++ NGK L KRT SS SL + ++ +FQS + K ++N V +
Sbjct: 61 VTKSISNNGKALKKRTFSS--SLQVPKSRTINHYFQSSS--KVNEKNKNVVVVDDDNDDE 116
Query: 119 PSIVEEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQ 178
++KE P M + DS + +++ SDW+ K + LL+KHFG SSLK+FQ
Sbjct: 117 DVEEHKEKEFLPRMG----FDHDS---AVAHAIDVASDWQQKASILLQKHFGFSSLKSFQ 169
Query: 179 KEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGV 238
KEALSAW+ H DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQC KL+KHG+
Sbjct: 170 KEALSAWIDHRDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLTKHGI 229
Query: 239 TACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298
+ACFLGSGQPDN VE+KA+RGMYSI+Y+CPETV+RLI+PLQ+LAE+RGIALFAIDEVHCV
Sbjct: 230 SACFLGSGQPDNTVEKKAMRGMYSIVYICPETVLRLIQPLQKLAETRGIALFAIDEVHCV 289
Query: 299 SKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGT 358
SKWGHDFRP Y RLSVLRENF LKSLKFDIP+MALTATAT +VREDILKSL +SK T
Sbjct: 290 SKWGHDFRPAYSRLSVLRENFTTGKLKSLKFDIPMMALTATATKRVREDILKSLRLSKDT 349
Query: 359 KFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQS 418
VLTSFFRPNLRF VKHS+T S ASY+KDF +LI +Y G +K+ D D S
Sbjct: 350 SVVLTSFFRPNLRFMVKHSRT-SWASYEKDFHELIKVY------GGNKKAFTSGDADGVS 402
Query: 419 DTSSSSSMSEESRISPNIGDGYYDDEDVG--------NSPMGKEMSVEFLEND-----SV 465
+S +S S + DD D+ N +++++EFLEND S
Sbjct: 403 ISSDASDTDSVSSDDVDGNQDDCDDRDINVMHSGNTSNHKKRRKLTIEFLENDVDVFQSA 462
Query: 466 DDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKET 525
DD DV CGEF P + + E D KP +RL ML+EPL G TIIYVPTRK+T
Sbjct: 463 DDLDVTCGEFCVQPPPKQCELS---ETIDTPTKPEKRLKMLKEPLGQGPTIIYVPTRKDT 519
Query: 526 LSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRII 585
+ IAKYLC GVKAAAYNA LPK LRR H EFHEN LEVVVATIAFGMGIDK NVRRII
Sbjct: 520 VRIAKYLCKSGVKAAAYNAGLPKLHLRRTHKEFHENTLEVVVATIAFGMGIDKSNVRRII 579
Query: 586 HYGWPQSLEAYYQEAGRAGRDGHLADC------------------VLYANLSSMPTLLPS 627
HYGWPQSLEAYYQEAGRAGRDG LADC VLYANL+ P+LLPS
Sbjct: 580 HYGWPQSLEAYYQEAGRAGRDGKLADCSCLLFYSFALVFGPHFQPVLYANLARKPSLLPS 639
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC---------QLCDVC 678
RRSED TKQAY MLSDCFRYGMNTSCCRAKILVEYFGEDFSH+KC LCDVC
Sbjct: 640 RRSEDMTKQAYIMLSDCFRYGMNTSCCRAKILVEYFGEDFSHQKCLLYVKSCLNALCDVC 699
Query: 679 VDGPPEMKNLKEEANILMQVIA-AYNEQSNSMD--DDDGIYSGIKKQKFMDRPNLKMFVS 735
+GPP+ NLKEEA IL+Q I A N +S S+D D+D I+ K ++ +RP+L V
Sbjct: 700 NNGPPQRLNLKEEACILLQTIMLAGNARSYSVDSSDNDDIHFNSKDRRLGERPSLTTLVR 759
Query: 736 KIREQSQKYLATDLLWWRGLARIMENKGYIREGDDRV 772
IREQ QK+L TD+LWWRGL RI+E KGYIREGDD+
Sbjct: 760 SIREQFQKFLTTDILWWRGLTRILEAKGYIREGDDKT 796
>gi|18421145|ref|NP_568499.1| RECQ helicase SIM [Arabidopsis thaliana]
gi|75309680|sp|Q9FT69.1|RQSIM_ARATH RecName: Full=ATP-dependent DNA helicase Q-like SIM; AltName:
Full=RecQ-like protein SIM; Short=AtRecQsim;
Short=Similar to RecQ protein
gi|11121453|emb|CAC14870.1| DNA Helicase [Arabidopsis thaliana]
gi|16604619|gb|AAL24102.1| unknown protein [Arabidopsis thaliana]
gi|22136826|gb|AAM91757.1| unknown protein [Arabidopsis thaliana]
gi|332006331|gb|AED93714.1| RECQ helicase SIM [Arabidopsis thaliana]
Length = 858
Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/778 (58%), Positives = 568/778 (73%), Gaps = 34/778 (4%)
Query: 7 SRDEVIAKLIEMGFDDSDITEAVETVG-PSFNDAIEYILNGSVRNSKGKSVSWSSKCVTE 65
S D+++ K++EMGF+ D EAV+ VG S +DA+EYIL G+ R K S C +
Sbjct: 4 SSDQLVMKIVEMGFEKLDALEAVKAVGGKSCDDAVEYILKGNHRTGGFKPASLL--CSSG 61
Query: 66 NGKTLGKRTL-SSANSLGQMRQASLLDHFQSGNRQKRGKRNVGD-DVSVSGSVVSPSIVE 123
+ K LGKR + SS +S RQ+SLLDHF+S N+ K+ G +V VS E
Sbjct: 62 SNKILGKRAMPSSFSSSESKRQSSLLDHFRSVNQNKKKGDTFGTVEVDSQLETVSEHSEE 121
Query: 124 EQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALS 183
+K P + L C E S WE +VNS+L+ FG SSL++FQ+EALS
Sbjct: 122 VRKSLAPVFMESSCFPEGQLLNGCS---EASSSWEKRVNSILRNRFGISSLRSFQREALS 178
Query: 184 AWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFL 243
W+AH DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQC KLS+H V+ACFL
Sbjct: 179 TWVAHKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLSRHKVSACFL 238
Query: 244 GSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303
GSGQ DN +E+KA++GMY IIYVCPETV+RLIKPLQ+LA++ GIALFAIDE HCVSKWGH
Sbjct: 239 GSGQLDNCIEEKAMQGMYQIIYVCPETVVRLIKPLQKLAKTHGIALFAIDEAHCVSKWGH 298
Query: 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT 363
DFRP YR+LSVLRENF A+NL+ L++D+P+MALTATAT+ V+EDIL+SLH+SK TK VLT
Sbjct: 299 DFRPHYRKLSVLRENFCASNLEFLEYDVPIMALTATATVNVQEDILESLHLSKETKIVLT 358
Query: 364 SFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSS 423
SFFRPNL+FSVKHS+T +SY KDF L+D+Y++KK + K+ + I ++ ++Q+D S
Sbjct: 359 SFFRPNLQFSVKHSRTKFASSYAKDFQNLVDLYSEKKNSTGKKLAVISRESEEQTDFGSH 418
Query: 424 SSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND-----SVDDWDVACGEFYGH 478
S + + + NS GKE+S +LE++ SVDDWDVACGEF
Sbjct: 419 DSENIHETDYDEDEEDQENSLAKKNSSNGKELSEAYLEDETDIFQSVDDWDVACGEFC-- 476
Query: 479 SPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVK 538
+ +LL P S Q+ LE GLTIIYVPTRKE+++IAKYLCG G+K
Sbjct: 477 ----------AMPSCELLEIPVP--SEKQKDLE-GLTIIYVPTRKESVNIAKYLCGVGLK 523
Query: 539 AAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQ 598
AAAYNASLPK LR+VH +FH+NKL+VVVATIAFGMGIDK NVR+IIHYGW QSLEAYYQ
Sbjct: 524 AAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQ 583
Query: 599 EAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
EAGRAGRDG LA+CVLYA+LS PTLLPSRRS++QT+QAY+MLSDCFRYGMNTS CRAKI
Sbjct: 584 EAGRAGRDGELAECVLYADLSRAPTLLPSRRSKEQTEQAYKMLSDCFRYGMNTSQCRAKI 643
Query: 659 LVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAY-----NEQSNSMDDDD 713
LVEYFGE+FS +KC CDVC +GPPE+ +++EEAN+L QVI A+ N+ ++ +D
Sbjct: 644 LVEYFGEEFSSKKCNSCDVCTEGPPELVDVREEANLLFQVITAFHLQVDNDSEHAPYEDY 703
Query: 714 GIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDDR 771
G+ + K+ K +PNL F+SK+REQ +K+ TD LWW+GLARIME +GYI+E D++
Sbjct: 704 GLGNS-KQNKLSHKPNLLFFISKLREQCEKFKETDCLWWKGLARIMEAEGYIKEMDNK 760
>gi|357134633|ref|XP_003568921.1| PREDICTED: ATP-dependent DNA helicase Q-like SIM-like [Brachypodium
distachyon]
Length = 865
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/774 (53%), Positives = 530/774 (68%), Gaps = 32/774 (4%)
Query: 4 SGTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVRNSKGKSVSWSS--K 61
S S D VIA+L+EMGFD I+EA+ VGP+ D +E++LNGS + S +
Sbjct: 8 SDVSADHVIAELLEMGFDFDKISEAIGVVGPNRADVVEFVLNGSGSGQRKPSQEFGRDLS 67
Query: 62 CVTENGKTLGKRTLSSANSLGQMRQASLLDHFQSGNRQKRGKRNVGDDVSVSGSVVSPSI 121
+ +G R AN G+ +Q+S+ DH S KR R G++ S S S + S+
Sbjct: 68 VPSNSGSRASDRRTRLANPRGRFKQSSITDHVSSTTCSKRESR--GEEASTSYSCLVDSV 125
Query: 122 VEEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEA 181
PG+ + ++S + + G D K++++L+KHFG S+K FQKEA
Sbjct: 126 -------DPGLTAAICSKSKPESQPLLENPRGGFDRSNKISAVLRKHFGFLSVKGFQKEA 178
Query: 182 LSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTAC 241
L AW AH DCLVLAATGSGKSLCFQIPALLT K+VVVISPLISLMHDQC KL+KHG++AC
Sbjct: 179 LDAWFAHKDCLVLAATGSGKSLCFQIPALLTTKIVVVISPLISLMHDQCLKLAKHGISAC 238
Query: 242 FLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKW 301
FLGSGQPDN+VE KA+ GMY I+YVCPETV+RL++PL++LAE GIALFAIDEVHCVSKW
Sbjct: 239 FLGSGQPDNRVEGKAMAGMYKIVYVCPETVLRLMEPLKKLAEKPGIALFAIDEVHCVSKW 298
Query: 302 GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFV 361
GHDFRPDYRRLSVLRENF ++NLK L+ DIPLMALTATAT VREDI+KSL MS+ T V
Sbjct: 299 GHDFRPDYRRLSVLRENFSSSNLKFLEHDIPLMALTATATFPVREDIVKSLKMSEDTLIV 358
Query: 362 LTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTS 421
LTSFFRPNLRF+VKHSKTS+ +SY KDF +L +IY K G K + I ++ S++S
Sbjct: 359 LTSFFRPNLRFNVKHSKTSA-SSYGKDFQELTEIYNASKNFGGKGQK-ILHAVEPDSESS 416
Query: 422 SSSSMSEESR-----ISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFY 476
S S+ + + I+ + G VG S + + E + VDD+DV+CGEF
Sbjct: 417 SYESLDDSASDDDYAIAGSTNHGDIKRRKVGMSLVNENAEHELDQYQGVDDFDVSCGEFL 476
Query: 477 GHSPHRDRDTDRSFERTDLLNKPAERLSMLQ-EPLEDGLTIIYVPTRKETLSIAKYLCGF 535
S R + PA+ + E L+ G TIIYVPTRKET+ +A YLC
Sbjct: 477 EGS------------RPESFASPAQSNETISLESLDQGPTIIYVPTRKETVELANYLCKS 524
Query: 536 GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEA 595
G++AAAYNA +P+S LR+VH +FH N LEVVVATIAFGMGIDK NVRRIIHYG+PQSLEA
Sbjct: 525 GLRAAAYNAKMPRSHLRQVHEQFHSNVLEVVVATIAFGMGIDKSNVRRIIHYGFPQSLEA 584
Query: 596 YYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCR 655
YYQEAGRAGRDG L+DC LY N PTLLP++RS++QTK A+RML DCF+Y +NTS CR
Sbjct: 585 YYQEAGRAGRDGKLSDCTLYCNFLRTPTLLPNKRSDEQTKAAHRMLRDCFQYALNTSTCR 644
Query: 656 AKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNS-MDDDDG 714
AKILV+YFGE+F + CQ+CD+C++GPP+M + K+EA + M V+ A Q+ MD +
Sbjct: 645 AKILVKYFGEEFGPDGCQMCDICINGPPQMHDFKDEAVVFMNVLRAQTGQATEDMDCNSM 704
Query: 715 IYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREG 768
S ++ F P+ + VS IRE+ +++ TD +WW+GLARI+E GYI+E
Sbjct: 705 SRSKSGRRSFGAIPDFRTAVSYIREKFPRFVTTDKIWWQGLARILEGMGYIQEA 758
>gi|34391857|gb|AAO52678.1| putative DNA helicase RecQsim [Oryza sativa Japonica Group]
Length = 773
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/784 (53%), Positives = 529/784 (67%), Gaps = 39/784 (4%)
Query: 2 SGSGTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVRNSKGKSVSWSSK 61
+G S D VIA+L++MGF+ +I+ A+ VG D +E++L GS N K K S ++
Sbjct: 6 AGGDVSADRVIAELLDMGFEFDEISRAIGAVGTRCADVLEFMLGGS-GNGKMKKASRETR 64
Query: 62 ---CVTENGKTLGKRTLSSANSL----GQMRQASLLDHFQSGNRQKRGKRNVGDDVSVSG 114
CV+ N + R N L +++Q+S+ DH S +RG + G+ S S
Sbjct: 65 SRSCVSSNAEA---RPSDDGNKLVNPRKRLKQSSITDHLASNTGCRRG--SCGEKASTSY 119
Query: 115 SVVSPSIVEEQKESYPGMDCN-LKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSS 173
++ S + C+ LK ES L + E ++G K++++L+KHFG S
Sbjct: 120 PCLAASDDPRAPVAVSADVCSALKPESQFLLANSRSESDLGH----KISAVLRKHFGFSC 175
Query: 174 LKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKL 233
+K FQKEAL AW AH D LVLAATGSGKSLCFQIPALLT KVVVVISPLISLMHDQC KL
Sbjct: 176 VKGFQKEALDAWFAHKDSLVLAATGSGKSLCFQIPALLTAKVVVVISPLISLMHDQCLKL 235
Query: 234 SKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAID 293
+KHG++ACFLGSGQPD++VE KA+ GMY IIYVCPETV+RL++PL++LAE GIALFAID
Sbjct: 236 AKHGISACFLGSGQPDSRVEGKAMSGMYKIIYVCPETVLRLMEPLKKLAEKPGIALFAID 295
Query: 294 EVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353
EVHCVSKWGHDFRPDYRRLSVLRENF A+ LK L+ DIPLMALTATATI VR DI+KSL
Sbjct: 296 EVHCVSKWGHDFRPDYRRLSVLRENFSASKLKFLEHDIPLMALTATATIPVRADIIKSLK 355
Query: 354 MSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKK---TGEKEKSAI 410
MS+ T VLTSFFRPNLRF VKHS+TS A YKKDF +L+ Y + G+K S I
Sbjct: 356 MSEDTVVVLTSFFRPNLRFRVKHSRTSVSA-YKKDFRELVVTYNDSRNFRGKGQKALSEI 414
Query: 411 PQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND-----SV 465
D + S S +MS++ N+ ++D G + +G + E EN+ V
Sbjct: 415 NPDSESSSYESPDDAMSDDE--DANVDSMSHEDNSFGKTKVGMPLINENAENELDVYPGV 472
Query: 466 DDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKET 525
DD+DV CGEF S + + +T S E + G TIIYVPTRK+T
Sbjct: 473 DDFDVTCGEFLECSWPENSASSSQCNKTG---------SSSSEIADQGPTIIYVPTRKQT 523
Query: 526 LSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRII 585
+ +A YLC G+KAAAYNA +PKS LR+VH +FH N LEVVVATIAFGMGIDK NVRRII
Sbjct: 524 VELANYLCKTGLKAAAYNAKMPKSHLRQVHQQFHCNALEVVVATIAFGMGIDKSNVRRII 583
Query: 586 HYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCF 645
HYG+PQSLEAYYQEAGRAGRDG LADC LY NL PTLLP++RS++QTK AYRML DCF
Sbjct: 584 HYGFPQSLEAYYQEAGRAGRDGKLADCTLYCNLLRAPTLLPNKRSKEQTKVAYRMLRDCF 643
Query: 646 RYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQ 705
+Y +NTS CRAKILV+YFGE+F + C++CD+C++GPP+M + KE+A + M V+ A N Q
Sbjct: 644 QYALNTSICRAKILVKYFGEEFGPDGCRMCDICINGPPQMHDFKEDAVMFMSVLQAQNGQ 703
Query: 706 SNSMDDDDGIYSGIK-KQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGY 764
+ I I +Q+F + PN + VS IRE+ ++ TD +WW GLARI+E +GY
Sbjct: 704 ATEDMGCSNIPRYISGRQRFGEVPNFRGVVSYIREKFPRFATTDKVWWEGLARILEGRGY 763
Query: 765 IREG 768
I+E
Sbjct: 764 IQEA 767
>gi|293332916|ref|NP_001168823.1| uncharacterized protein LOC100382628 [Zea mays]
gi|223973201|gb|ACN30788.1| unknown [Zea mays]
gi|413949981|gb|AFW82630.1| hypothetical protein ZEAMMB73_799763 [Zea mays]
Length = 868
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/791 (51%), Positives = 525/791 (66%), Gaps = 63/791 (7%)
Query: 2 SGSGTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVRNS----KGKSVS 57
+G S D +IA+L++MGF+ I+ AV VGP + +E +L GS + +G V
Sbjct: 6 AGCDVSADGLIAELLDMGFEFDAISAAVGAVGPRRAEVLEVLLGGSDARAGQARRGGGVP 65
Query: 58 WSSKCVTENGKTLGKRTLSSANSLGQMRQASLLDHFQSGNRQKRGKRNVGDDVSVS---- 113
T + G R + +N G++RQ+S+ DH S G + G + ++S
Sbjct: 66 GRPALSTAQPRPAG-RGMKLSNPRGRLRQSSITDHVASATG---GGKESGREANISFPCS 121
Query: 114 ----GSVVSPSIVEEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHF 169
G V P V+ E P +S SL + + SD +++++L+KHF
Sbjct: 122 SAPGGPRVMPVAVDFCSEPGP--------QSQSLV----ENSTVESDQMDRISAVLQKHF 169
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQ 229
G S LK FQKE L AW AH DC+VLAATGSGKSLCFQIPALLT KVVVVISPLISLMHDQ
Sbjct: 170 GFSCLKAFQKEVLDAWSAHRDCIVLAATGSGKSLCFQIPALLTTKVVVVISPLISLMHDQ 229
Query: 230 CSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIAL 289
C KL+ HGV+ACFLGSGQPD++VE KA+ GMY I+YVCPET++RL++PL++LAE GIAL
Sbjct: 230 CLKLANHGVSACFLGSGQPDSRVEGKAMAGMYKIVYVCPETILRLMEPLKKLAEKPGIAL 289
Query: 290 FAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDIL 349
FAIDEVHCVSKWGHDFRPDYRRLS LRENF ++ LK LK DIPLMALTATATI VREDI
Sbjct: 290 FAIDEVHCVSKWGHDFRPDYRRLSALRENFSSSKLKFLKHDIPLMALTATATIPVREDIT 349
Query: 350 KSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSA 409
KSL MSK T VLTSFFRPNLRFSVKHSKTS+ +SY KDF +LI Y +E
Sbjct: 350 KSLKMSKDTAIVLTSFFRPNLRFSVKHSKTSA-SSYGKDFQELIGAY-----KASREGQQ 403
Query: 410 IPQDLDDQSDTSSSSSMSEESR--ISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND---- 463
I +D S++SS S+++ + N+ + D++VG + + E +EN+
Sbjct: 404 ILHGIDTDSESSSYESLNDSASDDEDANVISANHGDKNVGKTKTSMTLVEENIENELDLY 463
Query: 464 -SVDDWDVACGEFYGHS-PHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPT 521
VD++DV+CGEF S P + +S N+ + +Q G TI+YVPT
Sbjct: 464 QGVDNFDVSCGEFLECSQPESSKSPAQS-------NQTSSSDCGVQ-----GSTIVYVPT 511
Query: 522 RKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNV 581
RK+T+ +A +LC G++AAAYNA +PKS LR+VH +FH N LEVVVATIAFGMGIDK NV
Sbjct: 512 RKQTVELANFLCKSGLRAAAYNAKMPKSHLRQVHQQFHCNDLEVVVATIAFGMGIDKSNV 571
Query: 582 RRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRML 641
RRIIHYG PQSLEAYYQEAGRAGRDG L+DC LY N PTLLP++RSE+Q K AYRML
Sbjct: 572 RRIIHYGLPQSLEAYYQEAGRAGRDGKLSDCTLYYNFLRTPTLLPNKRSEEQAKAAYRML 631
Query: 642 SDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAA 701
DCF Y +NTS CRAKILV+YFGEDF + C++CD+C +GPP+M + KEEA + M V+
Sbjct: 632 RDCFHYSLNTSTCRAKILVKYFGEDFGPDGCRMCDICTNGPPQMHDFKEEAIVFMNVL-- 689
Query: 702 YNEQSNSMDDDDGIYSGIK-----KQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLA 756
+ + + D+ IYS + ++ F + PN +M VS IRE+ ++ ATD +WW+GL+
Sbjct: 690 --QGRSGGETDEMIYSRVPHYSSGRRGFGEAPNFRMVVSHIREKLPRFAATDKIWWQGLS 747
Query: 757 RIMENKGYIRE 767
RI+E Y+ E
Sbjct: 748 RILEGLRYVEE 758
>gi|297603843|ref|NP_001054667.2| Os05g0150600 [Oryza sativa Japonica Group]
gi|54291829|gb|AAV32197.1| putative DNA helicase [Oryza sativa Japonica Group]
gi|255676027|dbj|BAF16581.2| Os05g0150600 [Oryza sativa Japonica Group]
Length = 844
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/784 (51%), Positives = 506/784 (64%), Gaps = 67/784 (8%)
Query: 2 SGSGTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVRNSKGKSVSWSSK 61
+G S D VIA+L++MGF+ +I+ A+ VG D +E++L GS N K K S ++
Sbjct: 6 AGGDVSADRVIAELLDMGFEFDEISRAIGAVGTRCADVLEFMLGGS-GNGKMKKASRETR 64
Query: 62 ---CVTENGKTLGKRTLSSANSL----GQMRQASLLDHFQSGNRQKRGKRNVGDDVSVSG 114
CV+ N + R N L +++Q+S+ DH S +RG + G+ S S
Sbjct: 65 SRSCVSSNAEA---RPSDDGNKLVNPRKRLKQSSITDHLASNTGCRRG--SCGEKASTSY 119
Query: 115 SVVSPSIVEEQKESYPGMDCN-LKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSS 173
++ S + C+ LK ES L + E ++G K++++L+KHFG S
Sbjct: 120 PCLAASDDPRAPVAVSADVCSALKPESQFLLANSRSESDLGH----KISAVLRKHFGFSC 175
Query: 174 LKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKL 233
+K FQKEAL AW AH D LVLAATGSGKSLCFQIPALLT KVVVVISPLISLMHDQC KL
Sbjct: 176 VKGFQKEALDAWFAHKDSLVLAATGSGKSLCFQIPALLTAKVVVVISPLISLMHDQCLKL 235
Query: 234 SKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAID 293
+KHG++ACFLGSGQPD++VE KA+ GMY IIYVCPETV+RL++PL++LAE GIALFAID
Sbjct: 236 AKHGISACFLGSGQPDSRVEGKAMSGMYKIIYVCPETVLRLMEPLKKLAEKPGIALFAID 295
Query: 294 EVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353
EVHCVSKWGHDFRPDYRRLSVLRENF A+ LK L+ DIPLMALTATATI VR DI+KSL
Sbjct: 296 EVHCVSKWGHDFRPDYRRLSVLRENFSASKLKFLEHDIPLMALTATATIPVRADIIKSLK 355
Query: 354 MSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKK---TGEKEKSAI 410
MS+ T VLTSFFRPNLRF VKHS+TS A YKKDF +L+ Y + G+K S I
Sbjct: 356 MSEDTVVVLTSFFRPNLRFRVKHSRTSVSA-YKKDFRELVVTYNDSRNFRGKGQKALSEI 414
Query: 411 PQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND-----SV 465
D + S S +MS++ N+ ++D G + +G + E EN+ V
Sbjct: 415 NPDSESSSYESPDDAMSDDE--DANVDSMSHEDNSFGKTKVGMPLINENAENELDVYPGV 472
Query: 466 DDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKET 525
DD+DV CGEF S + + +T S E + G TIIYVPTRK+T
Sbjct: 473 DDFDVTCGEFLECSWPENSASSSQCNKTG---------SSSSEIADQGPTIIYVPTRKQT 523
Query: 526 LSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRII 585
+ +A YLC G+KAAAYNA +PKS LR+VH +FH N LEVVVATIAFGMGIDK NVRRII
Sbjct: 524 VELANYLCKTGLKAAAYNAKMPKSHLRQVHQQFHCNALEVVVATIAFGMGIDKSNVRRII 583
Query: 586 HYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCF 645
HYG+PQSLEAYYQEAGRAGRDG LADC LY NL PTLLP++RS++QTK AYRML DCF
Sbjct: 584 HYGFPQSLEAYYQEAGRAGRDGKLADCTLYCNLLRAPTLLPNKRSKEQTKVAYRMLRDCF 643
Query: 646 RYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQ 705
+ CD+C++GPP+M + KE+A + M V+ A N Q
Sbjct: 644 Q----------------------------CDICINGPPQMHDFKEDAVMFMSVLQAQNGQ 675
Query: 706 SNSMDDDDGIYSGIK-KQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGY 764
+ I I +Q+F + PN + VS IRE+ ++ TD +WW GLARI+E +GY
Sbjct: 676 ATEDMGCSNIPRYISGRQRFGEVPNFRGVVSYIREKFPRFATTDKVWWEGLARILEGRGY 735
Query: 765 IREG 768
I+E
Sbjct: 736 IQEA 739
>gi|222630221|gb|EEE62353.1| hypothetical protein OsJ_17142 [Oryza sativa Japonica Group]
Length = 826
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/784 (48%), Positives = 484/784 (61%), Gaps = 85/784 (10%)
Query: 2 SGSGTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVRNSKGKSVSWSSK 61
+G S D VIA+L++MGF+ +I+ A+ VG D +E++L GS N K K S ++
Sbjct: 6 AGGDVSADRVIAELLDMGFEFDEISRAIGAVGTRCADVLEFMLGGS-GNGKMKKASRETR 64
Query: 62 ---CVTENGKTLGKRTLSSANSL----GQMRQASLLDHFQSGNRQKRGKRNVGDDVSVSG 114
CV+ N + R N L +++Q+S+ DH S +RG + G+ S S
Sbjct: 65 SRSCVSSNAEA---RPSDDGNKLVNPRKRLKQSSITDHLASNTGCRRG--SCGEKASTSY 119
Query: 115 SVVSPSIVEEQKESYPGMDCN-LKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSS 173
++ S + C+ LK ES L + E ++G K++++L+KHFG S
Sbjct: 120 PCLAASDDPRAPVAVSADVCSALKPESQFLLANSRSESDLGH----KISAVLRKHFGFSC 175
Query: 174 LKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKL 233
+K FQKEAL AW AH D LVLAATG
Sbjct: 176 VKGFQKEALDAWFAHKDSLVLAATG----------------------------------- 200
Query: 234 SKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAID 293
SGQPD++VE KA+ GMY IIYVCPETV+RL++PL++LAE GIALFAID
Sbjct: 201 -----------SGQPDSRVEGKAMSGMYKIIYVCPETVLRLMEPLKKLAEKPGIALFAID 249
Query: 294 EVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353
EVHCVSKWGHDFRPDYRRLSVLRENF A+ LK L+ DIPLMALTATATI VR DI+KSL
Sbjct: 250 EVHCVSKWGHDFRPDYRRLSVLRENFSASKLKFLEHDIPLMALTATATIPVRADIIKSLK 309
Query: 354 MSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKK---TGEKEKSAI 410
MS+ T VLTSFFRPNLRF VKHS+TS A YKKDF +L+ Y + G+K S I
Sbjct: 310 MSEDTVVVLTSFFRPNLRFRVKHSRTSVSA-YKKDFRELVVTYNDSRNFRGKGQKALSEI 368
Query: 411 PQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND-----SV 465
D + S S +MS++ N+ ++D G + +G + E EN+ V
Sbjct: 369 NPDSESSSYESPDDAMSDDE--DANVDSMSHEDNSFGKTKVGMPLINENAENELDVYPGV 426
Query: 466 DDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKET 525
DD+DV CGEF S + + +T S E + G TIIYVPTRK+T
Sbjct: 427 DDFDVTCGEFLECSWPENSASSSQCNKTG---------SSSSEIADQGPTIIYVPTRKQT 477
Query: 526 LSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRII 585
+ +A YLC G+KAAAYNA +PKS LR+VH +FH N LEVVVATIAFGMGIDK NVRRII
Sbjct: 478 VELANYLCKTGLKAAAYNAKMPKSHLRQVHQQFHCNALEVVVATIAFGMGIDKSNVRRII 537
Query: 586 HYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCF 645
HYG+PQSLEAYYQEAGRAGRDG LADC LY NL PTLLP++RS++QTK AYRML DCF
Sbjct: 538 HYGFPQSLEAYYQEAGRAGRDGKLADCTLYCNLLRAPTLLPNKRSKEQTKVAYRMLRDCF 597
Query: 646 RYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQ 705
Y +NTS CRAKILV+YFGE+F + C++CD+C++GPP+M + KE+A + M V+ A N Q
Sbjct: 598 HYALNTSICRAKILVKYFGEEFGPDGCRMCDICINGPPQMHDFKEDAVMFMSVLQAQNGQ 657
Query: 706 SNSMDDDDGIYSGIK-KQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGY 764
+ I I +Q+F + PN + VS IRE+ ++ TD +WW GLARI+E +GY
Sbjct: 658 ATEDMGCSNIPRYISGRQRFGEVPNFRGVVSYIREKFPRFATTDKVWWEGLARILEGRGY 717
Query: 765 IREG 768
I+E
Sbjct: 718 IQEA 721
>gi|218196105|gb|EEC78532.1| hypothetical protein OsI_18479 [Oryza sativa Indica Group]
Length = 826
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/784 (47%), Positives = 482/784 (61%), Gaps = 85/784 (10%)
Query: 2 SGSGTSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVRNSKGKSVSWSSK 61
+G S D VIA+L++MGF+ +I+ A VG D +E++L GS N K K S ++
Sbjct: 6 AGGDVSADRVIAELLDMGFEFDEISRATGAVGTRRADVLEFMLGGS-GNGKMKKASRETR 64
Query: 62 ---CVTENGKTLGKRTLSSANSL----GQMRQASLLDHFQSGNRQKRGKRNVGDDVSVSG 114
CV+ N + R N L +++Q+S+ DH S +RG + G+ S S
Sbjct: 65 SRSCVSSNAEA---RPSDDGNKLVNPRKRLKQSSITDHLASNTGCRRG--SCGEKASTSY 119
Query: 115 SVVSPSIVEEQKESYPGMDCN-LKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSS 173
++ S + C+ LK ES L + E ++G K++++L+KHFG S
Sbjct: 120 PCLAASDDPRAPVAVSADVCSALKPESQFLLANSRSESDLGH----KISAVLRKHFGFSC 175
Query: 174 LKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKL 233
+K FQKEAL AW AH D LVLAATG
Sbjct: 176 VKGFQKEALDAWFAHKDSLVLAATG----------------------------------- 200
Query: 234 SKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAID 293
SGQPD++VE KA+ GMY IIYVCPETV+RL++PL++LAE GIALFAID
Sbjct: 201 -----------SGQPDSRVEGKAMSGMYKIIYVCPETVLRLMEPLKKLAEKPGIALFAID 249
Query: 294 EVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353
EVHCVSKWGHDFRPDYRRLSVLRENF A+ LK L+ DIPLMALTATATI VR DI+KSL
Sbjct: 250 EVHCVSKWGHDFRPDYRRLSVLRENFSASKLKFLEHDIPLMALTATATIPVRADIIKSLK 309
Query: 354 MSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKK---TGEKEKSAI 410
MS+ T VLTSFFRPNLRF VKHS+TS + YKKDF +L+ Y + G+K I
Sbjct: 310 MSEDTVVVLTSFFRPNLRFRVKHSRTSV-SVYKKDFRELVVTYNDSRNFRGKGQKALREI 368
Query: 411 PQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND-----SV 465
D + S S +MS++ N+ ++D G + +G + E EN+ V
Sbjct: 369 NPDSESSSYESPDDAMSDDE--DANVDSMSHEDNSFGKTKVGMPLINENAENELDVYPGV 426
Query: 466 DDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKET 525
DD+DV CGEF S + + +T S E + G TIIYVPTRK+T
Sbjct: 427 DDFDVTCGEFLECSWPENSASSSQCNKTG---------SSSSEIADQGPTIIYVPTRKQT 477
Query: 526 LSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRII 585
+ +A YLC G+KAAAYNA +PKS LR+VH +FH N LEVVVATIAFGMGIDK NVRRII
Sbjct: 478 VELANYLCKTGLKAAAYNAKMPKSHLRQVHQQFHCNALEVVVATIAFGMGIDKSNVRRII 537
Query: 586 HYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCF 645
HYG+PQSLEAYYQEAGRAGRDG LADC LY NL PTLLP++RS++QTK AYRML DCF
Sbjct: 538 HYGFPQSLEAYYQEAGRAGRDGKLADCTLYCNLLRAPTLLPNKRSKEQTKVAYRMLRDCF 597
Query: 646 RYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQ 705
Y +NTS CRAKILV+YFGE+F + C++CD+C++GPP+M + KE+A + M V+ A N Q
Sbjct: 598 HYALNTSICRAKILVKYFGEEFGPDGCRMCDICINGPPQMHDFKEDAVMFMSVLQAQNGQ 657
Query: 706 SNSMDDDDGIYSGIK-KQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGY 764
+ I I +Q+F + PN + VS IRE+ ++ TD +WW GLARI+E +GY
Sbjct: 658 ATEDMGCSNIPRYISGRQRFGEVPNFRGVVSYIREKFPRFATTDKVWWEGLARILEGRGY 717
Query: 765 IREG 768
I+E
Sbjct: 718 IQEA 721
>gi|168040234|ref|XP_001772600.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676155|gb|EDQ62642.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 711
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 304/627 (48%), Positives = 399/627 (63%), Gaps = 36/627 (5%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
WE + L+++FG+ LK+FQ+ A+ AW + DC VLAATGSGKSLCFQ+PAL+TGKVV
Sbjct: 1 WEKAAVTALRRYFGYQELKSFQRIAIEAWADNRDCFVLAATGSGKSLCFQLPALMTGKVV 60
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
VV+SPLISLMHDQC +L++ GV+ACFLGSGQ D +E KA+ G+Y+I+YVCPET+ RL
Sbjct: 61 VVVSPLISLMHDQCLQLARQGVSACFLGSGQVDKTIELKAMAGIYNIVYVCPETLPRLES 120
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
LQ LA +GIALFA+DE HC+SKWGHDFRP YR+LS+LR+ F + L IP+MAL
Sbjct: 121 CLQSLARGKGIALFAVDEAHCISKWGHDFRPTYRQLSMLRDKFKVGVIPGLNQQIPIMAL 180
Query: 337 TATATIQVREDILKSLHMSKGT-KFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDI 395
TATAT VREDIL SL ++ G + VLT+FFRPNL FSV HSKT+ SY+ DF LI++
Sbjct: 181 TATATPFVREDILNSLGIAAGNPRIVLTTFFRPNLYFSVNHSKTTKVTSYENDFASLINL 240
Query: 396 YTKKKKTGEKE---KSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMG 452
YT+ +++ S +D D+ + ++ S GD D N G
Sbjct: 241 YTRNGDRCQRDLVILSDDYEDDDEDDEDDDDDDDDDDDDYSSAEGDAIKD-----NDCDG 295
Query: 453 KEMSVEFLEN-DSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLE 511
++ +FLE+ D D CGEF G R L A + + L
Sbjct: 296 SRLTTQFLEDEDERLGGDFECGEFRG--------------RAAALRDSAGQDNGKATELG 341
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TI+Y+PTRKET ++AK+LC GVKAAAY+A LP++ LR+VH FH + L+VVVATIA
Sbjct: 342 EGPTIVYMPTRKETETLAKFLCRHGVKAAAYHAKLPRTHLRQVHEGFHGDNLQVVVATIA 401
Query: 572 FGMGIDKLNVRRIIHYGWP-QSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRS 630
FGMGIDK NVRR+IHYGWP QSLEAYYQEAGRAGRDG +DC L+ +++ +P+LLPSRR
Sbjct: 402 FGMGIDKPNVRRVIHYGWPQQSLEAYYQEAGRAGRDGARSDCELFVDMTVLPSLLPSRRD 461
Query: 631 EDQTKQAYRMLSDCF--RYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
QTK + MLS C RY + CCR +++YFGE C +CDVC+ GPP +NL
Sbjct: 462 PAQTKHSLEMLSQCLTSRYAIQQDCCRVHTILKYFGEVLEGGLCNMCDVCLKGPPPAQNL 521
Query: 689 KEEANILMQVIAAY-------NEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQS 741
EA +L+ IAA NE D+ + I+ + + L FV ++
Sbjct: 522 TREAVLLLTAIAASQLSFSPCNEHLLPFDEQVLFETFIRSFSYAE--PLVAFVRVVQSFC 579
Query: 742 QKYLATDLLWWRGLARIMENKGYIREG 768
TD LWWRG RI+ ++G+I+
Sbjct: 580 HIARETDRLWWRGFVRILADRGFIQNA 606
>gi|242089541|ref|XP_002440603.1| hypothetical protein SORBIDRAFT_09g003880 [Sorghum bicolor]
gi|241945888|gb|EES19033.1| hypothetical protein SORBIDRAFT_09g003880 [Sorghum bicolor]
Length = 807
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 277/526 (52%), Positives = 345/526 (65%), Gaps = 61/526 (11%)
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+E GIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENF ++ LK LK DIPLMALTATAT
Sbjct: 194 SEKPGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFSSSKLKFLKHDIPLMALTATAT 253
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKK 401
I VREDI+KSL MSK T VLTSFFRPNLRFSVKHSKTS +SY KDF +LI Y +K
Sbjct: 254 IPVREDIIKSLKMSKDTTIVLTSFFRPNLRFSVKHSKTSV-SSYGKDFQELIGTYNASRK 312
Query: 402 TGEKEKSAIPQDLDDQSDTSSSSSMSEESR--ISPNIGDGYYDDEDVGNSPMGKEMSVEF 459
+ I + D S+ SS S ++ + N+ + D++VG + + E
Sbjct: 313 GQQ-----IIHENDTDSERSSYESWNDSASDYEDENVDSASHGDKNVGKTKTSMSVVKEN 367
Query: 460 LEND-----SVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAE-RLSMLQEPLEDG 513
+EN+ VDD+DV+CGEF S R + PA+ + E + G
Sbjct: 368 IENELDLYQGVDDFDVSCGEFLECS------------RPESSKSPAQSNQTSSSECGDQG 415
Query: 514 LTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFG 573
TI+YVPTRKET+ +A +LC G++AAAYNA +PKS LR+VH +FH N LEVVVATIAFG
Sbjct: 416 PTIVYVPTRKETVEVANFLCKSGLRAAAYNAKMPKSHLRQVHQQFHCNDLEVVVATIAFG 475
Query: 574 MGIDKLNVRRIIHYGWPQ--------------------------SLEAYYQEAGRAGRDG 607
MGIDK NVRRIIHYG PQ SLEAYYQEAGRAGRDG
Sbjct: 476 MGIDKSNVRRIIHYGLPQKQILYKLVCKHIYCVYPMAYTPEHVKSLEAYYQEAGRAGRDG 535
Query: 608 HLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDF 667
L+DC LY N PTLLP++RSE+QTK AYRML DCF Y +NTS CRAKILV+YFGEDF
Sbjct: 536 KLSDCTLYCNFFRAPTLLPNKRSEEQTKAAYRMLRDCFHYSLNTSTCRAKILVKYFGEDF 595
Query: 668 SHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIK-----KQ 722
H+ C++CD+C +GPP+M + KEEA + M V+ + + + +D IYS + ++
Sbjct: 596 GHDGCRMCDICTNGPPQMHDFKEEAIVFMNVL----QGRSGGETEDMIYSSVPHYSSGRR 651
Query: 723 KFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREG 768
F D PN +M VS IRE+ ++ ATD +WW+GL+RI+E Y++E
Sbjct: 652 GFGDVPNFRMVVSHIREKLPRFAATDKMWWQGLSRILEGLRYVQEA 697
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 105/205 (51%), Gaps = 22/205 (10%)
Query: 6 TSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVRNS-----KGKSVSWSS 60
S D +IA+L++MGFD I+ AV VGP + +E +L GS + +G V
Sbjct: 5 VSADGLIAELLDMGFDFDAISAAVGAVGPRRAEVLELLLGGSAPRAGQEGRRGGGVPCRP 64
Query: 61 KCVTENGKTLGKRTLSSANSLGQMRQASLLDHFQS--GNRQKRGKRNVGDDVSVSGSVVS 118
+ GK N G++RQ+S+ DH S G R++ G R + S +
Sbjct: 65 APSAARPRPAGK-GAKLPNPRGRLRQSSITDHVGSATGGRKESG-REASTSLPCSSAPGD 122
Query: 119 PSIVEEQKESYPGMD-CN-LKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKN 176
P + G D C+ L +S SL + E SD +V+++L+KHFG S LK+
Sbjct: 123 PRVPV-------GADFCSKLGPQSRSLVENSTGE----SDQMDRVSAVLQKHFGFSCLKS 171
Query: 177 FQKEALSAWLAHHDCLVLAATGSGK 201
FQKE L AW AH DCLVLAATGS K
Sbjct: 172 FQKEVLDAWFAHRDCLVLAATGSEK 196
>gi|168050106|ref|XP_001777501.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671119|gb|EDQ57676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 879
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 287/702 (40%), Positives = 376/702 (53%), Gaps = 141/702 (20%)
Query: 125 QKESYPGMDCNLKAESDSLAV-------SCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNF 177
QK+ GM C + + + + PK +E WE + L+K+FGH LK+F
Sbjct: 182 QKKIKQGMSCVHEEGPSKIFILSNLKGGALPKLIE----WEKAAITALQKYFGHQQLKSF 237
Query: 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHG 237
Q+EA+ AW + DC VLAATGSGKSLCFQ+PAL+TGKVVVV+SPLISLMHDQC +L++ G
Sbjct: 238 QREAVEAWAENRDCFVLAATGSGKSLCFQLPALMTGKVVVVVSPLISLMHDQCLQLARQG 297
Query: 238 VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHC 297
V+ACFLGSGQ D +E KA+ G+Y+I+YVCPET+ RL Q LA +GIALFA+DE HC
Sbjct: 298 VSACFLGSGQVDKTIELKAMAGIYNIVYVCPETLPRLENYFQGLARGKGIALFAVDEAHC 357
Query: 298 VSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKG 357
+SKWGHDFRP YR+LS+LR+ F + LK IP+MALTATAT +VR+DIL SL ++ G
Sbjct: 358 ISKWGHDFRPTYRQLSMLRDKFKVGVIPGLKHQIPIMALTATATPRVRKDILTSLGIAAG 417
Query: 358 T-KFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDD 416
+ VLT+FFRPNL FSV HSKT+ SY+ DF LI YT+ + SA+ ++L
Sbjct: 418 NPRIVLTTFFRPNLYFSVHHSKTTMETSYEHDFSSLIKTYTEDVNKFQTTASALEENLLQ 477
Query: 417 QSDTSSSSSMSEESRIS-------------PN-----IGDGYYDDEDV------------ 446
+ + SS + R+ P+ G DED+
Sbjct: 478 ERNRISSKEDNHNLRMGLSQLVNSTYSVAWPDNKKQVPGKKLNQDEDLIILSDENEEEED 537
Query: 447 -----GNSPM-----GKEMSVEFLENDSV-----DDWDVACGEFYGHSPHRDRDTDRSFE 491
G+ G E++ E LE++ D V CGEF G +
Sbjct: 538 SSSAEGDDLKDTDCDGAELTGEVLEDEDEDERFGGDCFVECGEFSGLGAASE-------- 589
Query: 492 RTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQL 551
K RL+ + ++ G TIIY PTRKET +IAK+LCG G K + ++ L
Sbjct: 590 ------KSVGRLNSIAMEMKGGPTIIYTPTRKETEAIAKFLCGHGAKPLLI---MLRAHL 640
Query: 552 RRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD 611
R+VH FH L+VVVATIAFGMGIDK NVRR+IHYGWPQSLEAYYQEAGRAGRDG ++
Sbjct: 641 RQVHEGFHGGTLQVVVATIAFGMGIDKPNVRRVIHYGWPQSLEAYYQEAGRAGRDGSRSN 700
Query: 612 CVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEK 671
C L R C
Sbjct: 701 CAL------------------------RFFPRC--------------------------- 709
Query: 672 CQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLK 731
DVC++GPP +NL EA +L+ I N + ++ G+ K++ +
Sbjct: 710 ----DVCLEGPPPAQNLAREAVLLLAAIC--NSKKEAVASGAGVQP---KERILRGKGRA 760
Query: 732 MFVSKIREQSQK-------YLATDLLWWRGLARIMENKGYIR 766
SK + L D LWWRG RI+ ++GYIR
Sbjct: 761 GCTSKTSSEGHNGPAIGDVELHKDRLWWRGFVRILADRGYIR 802
>gi|413949982|gb|AFW82631.1| hypothetical protein ZEAMMB73_799763 [Zea mays]
Length = 576
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/448 (51%), Positives = 298/448 (66%), Gaps = 35/448 (7%)
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLI 393
MALTATATI VREDI KSL MSK T VLTSFFRPNLRFSVKHSKTS+ +SY KDF +LI
Sbjct: 1 MALTATATIPVREDITKSLKMSKDTAIVLTSFFRPNLRFSVKHSKTSA-SSYGKDFQELI 59
Query: 394 DIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESR--ISPNIGDGYYDDEDVGNSPM 451
Y +E I +D S++SS S+++ + N+ + D++VG +
Sbjct: 60 GAYK-----ASREGQQILHGIDTDSESSSYESLNDSASDDEDANVISANHGDKNVGKTKT 114
Query: 452 GKEMSVEFLEND-----SVDDWDVACGEFYGHS-PHRDRDTDRSFERTDLLNKPAERLSM 505
+ E +EN+ VD++DV+CGEF S P + +S N+ +
Sbjct: 115 SMTLVEENIENELDLYQGVDNFDVSCGEFLECSQPESSKSPAQS-------NQTSSSDCG 167
Query: 506 LQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEV 565
+Q G TI+YVPTRK+T+ +A +LC G++AAAYNA +PKS LR+VH +FH N LEV
Sbjct: 168 VQ-----GSTIVYVPTRKQTVELANFLCKSGLRAAAYNAKMPKSHLRQVHQQFHCNDLEV 222
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL 625
VVATIAFGMGIDK NVRRIIHYG PQSLEAYYQEAGRAGRDG L+DC LY N PTLL
Sbjct: 223 VVATIAFGMGIDKSNVRRIIHYGLPQSLEAYYQEAGRAGRDGKLSDCTLYYNFLRTPTLL 282
Query: 626 PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEM 685
P++RSE+Q K AYRML DCF Y +NTS CRAKILV+YFGEDF + C++CD+C +GPP+M
Sbjct: 283 PNKRSEEQAKAAYRMLRDCFHYSLNTSTCRAKILVKYFGEDFGPDGCRMCDICTNGPPQM 342
Query: 686 KNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIK-----KQKFMDRPNLKMFVSKIREQ 740
+ KEEA + M V+ + + + D+ IYS + ++ F + PN +M VS IRE+
Sbjct: 343 HDFKEEAIVFMNVL----QGRSGGETDEMIYSRVPHYSSGRRGFGEAPNFRMVVSHIREK 398
Query: 741 SQKYLATDLLWWRGLARIMENKGYIREG 768
++ ATD +WW+GL+RI+E Y+ E
Sbjct: 399 LPRFAATDKIWWQGLSRILEGLRYVEEA 426
>gi|292617367|ref|XP_697980.4| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Danio
rerio]
Length = 1361
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 198/626 (31%), Positives = 299/626 (47%), Gaps = 105/626 (16%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK FGH S K Q + + + L D LV+ ATG GKSLCFQ P + + VVISPLI
Sbjct: 435 LKMFFGHHSFKPVQWKVIQSILTERRDNLVVMATGYGKSLCFQFPPVYCQTISVVISPLI 494
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
+LM DQ +L+ + ACFLGS Q N EQ RG + ++Y+ PE I L +L
Sbjct: 495 ALMEDQVLQLTMSNIPACFLGSAQTKNLNEQ-VKRGDFRVVYMTPEFCSGNIPLLVQLDR 553
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ G++L A+DE HC+S+WGHDFR YR L L++N +P +ALTATA+
Sbjct: 554 TVGLSLIAVDEAHCISQWGHDFRSAYRELGKLKKNLPT---------VPFLALTATASPS 604
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTG 403
+R+DI+KSLH+ TSF RPNL V D Q + + KKK G
Sbjct: 605 IRDDIIKSLHLI-NPMITCTSFDRPNLYLDVNRKSG--------DVIQDLKRFLVKKKGG 655
Query: 404 --EKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLE 461
E E SAI S E R++
Sbjct: 656 GYEFEGSAI----------VYCPSKKEAERVT---------------------------- 677
Query: 462 NDSVDDWDVACGEFY-GHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVP 520
++ D+ CG ++ G S + R+T F R + +Q D ++ VP
Sbjct: 678 -TALFKLDIPCGVYHAGLSIKQRRETQHQFMRDE-----------IQVHAYDVAAVVSVP 725
Query: 521 TRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH--TEFHENKLEVVVATIAFGMGIDK 578
+I + L G ++ + +L K+ + +V+ E ++ VVAT+AFGMGI+K
Sbjct: 726 GVNPPANIEQQLIKLG---SSQSVALLKASIIQVNFLDEIMNSQGWCVVATVAFGMGINK 782
Query: 579 LNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSRRSEDQTK 635
++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ +++ +L +SE
Sbjct: 783 SDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSACHVLWMPGDMALNKFILNQSKSERFRS 842
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC--------QLCDVCVDGPPEMKN 687
M++ +Y +N++ CR K+++ +F ED K Q CD C G E
Sbjct: 843 YKIDMMAKMEKY-LNSTKCRRKLILCHF-EDKRLRKVTSGILGSSQCCDNCRSGVNE--- 897
Query: 688 LKEEANILMQ--VIAAYN--EQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQK 743
E+ +L Q + AY + + M++ GI + I F+ + + R+ S
Sbjct: 898 --EDLEVLQQDFGLCAYQLMKAISVMEERFGITAPI---LFLRGSCSQRVPERFRKHSLF 952
Query: 744 YLATDL--LWWRGLARIMENKGYIRE 767
+ D+ WW+ L R + + Y+ E
Sbjct: 953 GIGRDVSETWWKALGRELIAEKYLME 978
>gi|302755182|ref|XP_002961015.1| hypothetical protein SELMODRAFT_402571 [Selaginella moellendorffii]
gi|300171954|gb|EFJ38554.1| hypothetical protein SELMODRAFT_402571 [Selaginella moellendorffii]
Length = 935
Score = 206 bits (523), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 139/216 (64%), Gaps = 23/216 (10%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+SS + FQKE + L DCLV+ ATGSGKS+C+QIP L++ K VVISPLIS
Sbjct: 5 LKDYFGYSSFRPFQKEVIQQILRGRDCLVVMATGSGKSICYQIPPLVSSKTAVVISPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPE-----TVIRLIKPLQ 279
LM DQ L G+ A +LGS Q D VE KA RG Y I+Y+ PE T L+
Sbjct: 65 LMQDQVMGLKLRGIKAEYLGSAQTDKTVEDKAGRGEYDILYMTPEKACGTTWTSLL---- 120
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
SRG++L A+DE HC+S+WGHDFRP+Y+RLS +R ++P +ALTAT
Sbjct: 121 ----SRGVSLLAVDEAHCISEWGHDFRPEYQRLSSIRSKLP---------EVPFVALTAT 167
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
AT +VREDILKSL ++ ++SF RPN+ + VK
Sbjct: 168 ATHKVREDILKSLMLTNAY-IAVSSFDRPNILYGVK 202
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 157/299 (52%), Gaps = 26/299 (8%)
Query: 489 SFERTDLLN--KPAERLSMLQEPL---------EDGLTIIYVPTRKETLSIAKYLCGFGV 537
SF+R ++L KP R + +E L + G TI+Y T K+ + L G
Sbjct: 191 SFDRPNILYGVKPLTRSNAFREELATEVVKDLEQGGSTIVYCNTIKDVDEVTNALVKAGA 250
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
A AY++ L + VH F +++L+VVVAT+AFGMGIDK ++RR+IHYG P+SLE+YY
Sbjct: 251 AARAYHSKLGLKERNDVHRTFLKDELQVVVATVAFGMGIDKPDIRRVIHYGCPKSLESYY 310
Query: 598 QEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGM---NTSCC 654
QE+GR GRDG + C LY + T SE +T++ + ++D F T+ C
Sbjct: 311 QESGRCGRDGLPSACWLYFTRADF-TRAEFYTSEVRTQERKKAVADAFAASQGYCTTTTC 369
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA-NILMQVIAAYNEQSNSMDDDD 713
R K +++YFGE ++ C CD C + +++ +EA IL V +M D
Sbjct: 370 RRKFILQYFGELTKNDNCGNCDNCTKTAAQRRDMVQEAYAILAAVKLCGGFWGMNMPID- 428
Query: 714 GIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIREGDDR 771
+ G +K ++R K+ V + RE++ WW+ L + + GY+RE ++
Sbjct: 429 -VLRGSLAKKVVERGYEKLHVHGLGRERTAT-------WWKALGDQLLSLGYLRETREK 479
>gi|428172580|gb|EKX41488.1| hypothetical protein GUITHDRAFT_112459 [Guillardia theta CCMP2712]
Length = 578
Score = 205 bits (522), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 144/221 (65%), Gaps = 9/221 (4%)
Query: 174 LKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKL 233
L+++Q+ + +W D VL++TGSGKS+C+Q+PA+++GK +V+SPLISLM DQC +L
Sbjct: 31 LRDWQRSVVDSWRDGKDSFVLSSTGSGKSVCYQLPAMISGKTCIVVSPLISLMRDQCEQL 90
Query: 234 SKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRG-IALFAI 292
+ GV+AC+LGS QPD V +A+ G Y ++Y+CPET++++ L RL +G + L A+
Sbjct: 91 VEQGVSACYLGSAQPDKMVHGRAMSGEYLLLYICPETLVKICDSLWRLHHEQGKVCLLAV 150
Query: 293 DEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSL 352
DE HCVSKWGHDFRP Y L + + IP+MALTATA+ VRED++K L
Sbjct: 151 DEAHCVSKWGHDFRPSYLDLGRAFQQLHDGP----RGAIPVMALTATASPPVREDVMKIL 206
Query: 353 HMS---KGTKFV-LTSFFRPNLRFSVKHSKTSSRASYKKDF 389
+ G FV L SF RPNL F+V H+ + +KD
Sbjct: 207 RLGSSRNGDMFVCLNSFSRPNLCFTVHHTNMDNLQCLEKDL 247
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 135/256 (52%), Gaps = 24/256 (9%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G IIY PTR IA L GV A ++A L K L +V +F NK + +VAT+AF
Sbjct: 300 GSIIIYAPTRNLVKLIAMKLRKLGVSAEPFHAGLTKHHLHKVQQDFMRNKCKCIVATVAF 359
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSED 632
GMGI+K +VR ++HYGWPQ LE Y+QEAGRAGRDG A C L+ + +P+LLPS+ E+
Sbjct: 360 GMGINKPDVRLVVHYGWPQGLEQYFQEAGRAGRDGEEAKCALFVDFRGVPSLLPSQCDEE 419
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG-PPEMKNLKEE 691
+ R L+ F Y + + CR + ++ G++ + C+ CDVC G PE + KE
Sbjct: 420 RRATLQRGLTAVFLYAVRLNRCRLQQILSRLGDEAA-PPCRKCDVCSQGQQPEQQLGKEA 478
Query: 692 ANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLW 751
A +L +V E DR + VS + + + +
Sbjct: 479 ATLLREVHGKGGET-------------------WDRGTWQEAVSSWHKSCP---SRSVSF 516
Query: 752 WRGLARIMENKGYIRE 767
WRGLAR++ +G + +
Sbjct: 517 WRGLARLLLEEGVLED 532
>gi|302767148|ref|XP_002966994.1| hypothetical protein SELMODRAFT_408296 [Selaginella moellendorffii]
gi|300164985|gb|EFJ31593.1| hypothetical protein SELMODRAFT_408296 [Selaginella moellendorffii]
Length = 901
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/216 (50%), Positives = 138/216 (63%), Gaps = 23/216 (10%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+SS + FQKE + L DCLV+ ATGSGKS+C+QIP L++ K VVISPLIS
Sbjct: 5 LKDYFGYSSFRPFQKEVIQQILRGRDCLVVMATGSGKSICYQIPPLVSSKTAVVISPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPE-----TVIRLIKPLQ 279
LM DQ L G+ A +LGS Q D VE KA RG Y I+Y+ PE T L+
Sbjct: 65 LMQDQVMGLKLRGIKAEYLGSAQTDKTVEDKAGRGEYDILYMTPEKACGTTWTSLL---- 120
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
SRG++L A+DE HC+S+WGHDFRP+Y+RLS +R ++P +ALTAT
Sbjct: 121 ----SRGVSLLAVDEAHCISEWGHDFRPEYQRLSSIRSKLP---------EVPFVALTAT 167
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
AT +VREDILKSL M K ++SF R N+ + VK
Sbjct: 168 ATHKVREDILKSL-MLKNAYIAVSSFDRSNIFYGVK 202
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 157/299 (52%), Gaps = 26/299 (8%)
Query: 489 SFERTDLLN--KPAERLSMLQEPL---------EDGLTIIYVPTRKETLSIAKYLCGFGV 537
SF+R+++ KP R + +E L + G TI+Y T K+ + L G
Sbjct: 191 SFDRSNIFYGVKPLTRSNAFREELATEVVKDLEQGGSTIVYCNTIKDVDEVTNALVKAGA 250
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
A AY++ L + VH F +++L+VVVAT+AFGMGIDK ++RR+IHYG P+SLE+YY
Sbjct: 251 AARAYHSKLGLKERNDVHRTFLKDELQVVVATVAFGMGIDKPDIRRVIHYGCPKSLESYY 310
Query: 598 QEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGM---NTSCC 654
QE+GR GRDG + C LY + T SE +T++ + ++D F T+ C
Sbjct: 311 QESGRCGRDGLPSACWLYFTRADF-TRAEYYTSEVRTQERKKAVADAFAASQGYCTTTTC 369
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA-NILMQVIAAYNEQSNSMDDDD 713
R K +++YFGE ++ C CD C + +++ +EA IL V +M D
Sbjct: 370 RRKFILQYFGEFTKNDNCGNCDNCTKTAAQRRDMVQEAYAILAAVKLCGGFWGMNMPID- 428
Query: 714 GIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIREGDDR 771
+ G +K ++R K+ V + RE++ WW+ L + + GY+RE ++
Sbjct: 429 -VLRGSLAKKVVERGYEKLHVHGLGREKTAT-------WWKALGDQLLSLGYLRETREK 479
>gi|302839280|ref|XP_002951197.1| hypothetical protein VOLCADRAFT_117801 [Volvox carteri f.
nagariensis]
gi|300263526|gb|EFJ47726.1| hypothetical protein VOLCADRAFT_117801 [Volvox carteri f.
nagariensis]
Length = 327
Score = 196 bits (497), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 141/221 (63%), Gaps = 9/221 (4%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L++++G+S + Q++ ++ L +DCLV+ TG GKS+C+QIP L+ +V +V+SPLI
Sbjct: 18 ILEEYWGYSQFRFCQEQVINNILEGNDCLVVMPTGGGKSICYQIPPLVLDRVCIVVSPLI 77
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ + L+ ++A FLGS Q +V+ A G Y +Y+ PE L L +
Sbjct: 78 SLMEDQVAALNARRLSAAFLGSAQNSRQVKDDAWTGKYQFLYLTPELATSSGPALASLHK 137
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
RGIAL AIDE HCVS+WGHDFRPDYRRL LR+ +P++ALTATAT +
Sbjct: 138 RRGIALVAIDEAHCVSEWGHDFRPDYRRLGTLRDALPG---------VPIVALTATATPR 188
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRAS 384
VREDI+++L M +G + SF R NL F+V+ + + A+
Sbjct: 189 VREDIVRNLGMHRGAGRFVESFERTNLHFAVRQKTSVAEAA 229
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGV---KAAAYNASLPKSQLRRVHTEFH 559
L++LQ P T+IY T KE IA YL V +A Y+A + + R HT F
Sbjct: 254 LAVLQVPS----TLIYALTTKEVDEIATYLNQPTVLNGRAGRYHAKMTPKERREAHTAFM 309
Query: 560 ENKLEVVVATIAFG 573
+ L+V+VA++A+G
Sbjct: 310 RDDLDVLVASVAYG 323
>gi|357121465|ref|XP_003562440.1| PREDICTED: Werner syndrome ATP-dependent helicase-like
[Brachypodium distachyon]
Length = 894
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 136/215 (63%), Gaps = 10/215 (4%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ + LK++FG++ + +Q E + L DCLV+ ATGSGKS+C+QIP L+ K VV+S
Sbjct: 1 MEAALKRYFGYTGFRPYQGEIIQKVLEGRDCLVVMATGSGKSICYQIPPLVAKKTAVVVS 60
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
PL+SLM DQ L +HGV + +LGS Q + V +A +GM+ ++Y+ PE I L
Sbjct: 61 PLLSLMQDQVMSLKQHGVRSDYLGSTQMNTSVSSEAEKGMFDVLYMTPEKAISLPSRFWS 120
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
++ GI L AIDE HC+S+WGHDFRP+Y++L LR++ +P +ALTATA
Sbjct: 121 NLQASGICLLAIDEAHCISEWGHDFRPEYKQLHSLRDHL---------VGVPFVALTATA 171
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
T +VR DI SL++S + SF RPNL + VK
Sbjct: 172 TERVRGDIATSLNLSN-PHIAIGSFDRPNLFYGVK 205
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 138/260 (53%), Gaps = 17/260 (6%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G TIIY T K+T + + + G+KA Y+ + H F +++ V+VATIAF
Sbjct: 229 GSTIIYCTTIKDTEQVHEAMVSAGIKANIYHGRMGSKAREDSHRSFVRDEVFVMVATIAF 288
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSED 632
GMGIDK +VR +IHYG P+SLE+YYQE+GR GRDG + C LY S T SE
Sbjct: 289 GMGIDKPDVRCVIHYGCPKSLESYYQESGRCGRDGLPSVCWLYYQRSDF-TKGDFYCSEA 347
Query: 633 QTKQAYRMLSDCF----RYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
+ + D F +Y ++T+ CR K+L++YFG++ S C CD C E ++L
Sbjct: 348 TNPTQRKAIMDSFMAAQKYCLHTA-CRRKVLLQYFGQE-STTDCGNCDNCTATKNE-RDL 404
Query: 689 KEEANILMQVIAAYNEQSN-SMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLAT 747
+E+ +L+ I + + +M D + G + +K ++ K+ + + + Y
Sbjct: 405 SKESFLLLSCIKSCGGRWGLNMPVD--VLRGSRAKKIVEHNYDKL---PMHARGKDYPPN 459
Query: 748 DLLWWRGLARIMENKGYIRE 767
WW+ L ++ GY++E
Sbjct: 460 ---WWKALGGLLLAHGYLKE 476
>gi|218200270|gb|EEC82697.1| hypothetical protein OsI_27361 [Oryza sativa Indica Group]
Length = 905
Score = 189 bits (479), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 136/215 (63%), Gaps = 10/215 (4%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ + LK +FG S +++Q+E + L DCLV+ ATGSGKS+C+QIP L+T K VV+S
Sbjct: 1 MEAALKTYFGFSGFRSYQREIIQKVLEGRDCLVVMATGSGKSICYQIPPLVTKKTAVVVS 60
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
PL+SLM DQ L +HGV + +LGS Q D V +A +G + ++Y+ PE + L
Sbjct: 61 PLLSLMQDQVMSLKQHGVKSEYLGSTQTDISVSGQAEKGAFDVLYMTPEKAVSLPSRFWS 120
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
++ GI L A+DE HC+S+WGHDFR +Y++L +LR+ L +P +ALTATA
Sbjct: 121 NLQAAGICLLAVDEAHCISEWGHDFRTEYKQLHMLRD---------LLVGVPFVALTATA 171
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
T +VR DI SL + + V+ SF RPNL + VK
Sbjct: 172 TQRVRGDIATSLTL-RNPHIVVGSFDRPNLFYGVK 205
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 17/225 (7%)
Query: 489 SFERTDLLN--KPAER-LSMLQEPLED--------GLTIIYVPTRKETLSIAKYLCGFGV 537
SF+R +L K R ++ + E ++D G TIIY T +ET + + L G+
Sbjct: 194 SFDRPNLFYGVKSCNRSMAFINELVKDVSKNCTVGGSTIIYCTTIRETEQVHEALVAAGI 253
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
K++ Y+ + H F +++ V+VATIAFGMGIDK +VR +IHYG P+SLE+YY
Sbjct: 254 KSSIYHGRMGNKAREESHRSFVRDEVLVMVATIAFGMGIDKPDVRCVIHYGCPKSLESYY 313
Query: 598 QEAGRAGRDGHLADCVLYANLSSMPT---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCC 654
QE+GR GRDG + C LY S +S K +Y + +C
Sbjct: 314 QESGRCGRDGLPSVCWLYYQRSDFMKSDFYCAEAKSHTHRKAIMESFMAAQKYCLLATCH 373
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
R K L++YFGED + + C C+ C E ++L +E+ +L+ I
Sbjct: 374 R-KFLLQYFGEDRTTD-CGNCENCTRTKNE-RDLSKESFLLLSCI 415
>gi|255570869|ref|XP_002526386.1| conserved hypothetical protein [Ricinus communis]
gi|223534248|gb|EEF35962.1| conserved hypothetical protein [Ricinus communis]
Length = 795
Score = 188 bits (478), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 134/222 (60%), Gaps = 10/222 (4%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ S LKK+FG S + +QKE + L DCLV+ ATGSGKSLC+Q+P L+ GK VVIS
Sbjct: 1 MESALKKYFGFSGFRPYQKEVIEKILERKDCLVVMATGSGKSLCYQVPPLVAGKTAVVIS 60
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
PLISLM DQ L + G+ A +LG+GQ D+ V A G +++++V PE L
Sbjct: 61 PLISLMQDQVMALKQRGIRAEYLGTGQTDHSVHNSAQNGHFNLLFVTPEKACSLPVSFWS 120
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
G+ L A+DE HC+S+WGHDFR +Y++L LR ++ D+P + LTATA
Sbjct: 121 SLLKVGVCLLAVDEAHCISEWGHDFRVEYKQLYKLR---------NILLDVPFVGLTATA 171
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
T +VR DI+ SL M+ + SF R NL + VKH S+
Sbjct: 172 TAKVRFDIINSLKMND-PYISVGSFDRKNLFYGVKHFNRGSQ 212
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 66/101 (65%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
TIIY T K+ + + L G++A Y+ + H F ++L V+VATIAFGM
Sbjct: 231 TIIYCTTVKDVEQVFQLLQQAGIRAGIYHGQMGNKAREESHKSFIRDELHVMVATIAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
GIDK N+R++IHYG P+SLE+YYQE+GR GRDG + C LY
Sbjct: 291 GIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIPSVCWLY 331
>gi|113476788|ref|YP_722849.1| ATP-dependent DNA helicase RecQ [Trichodesmium erythraeum IMS101]
gi|110167836|gb|ABG52376.1| ATP-dependent DNA helicase RecQ [Trichodesmium erythraeum IMS101]
Length = 731
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 147/234 (62%), Gaps = 17/234 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + QK+ + L D L++ TG GKSLCFQ+PALL + +V+SPLIS
Sbjct: 18 LKNYFGYDSFRPGQKQIIQTALQQKDLLIIMPTGGGKSLCFQMPALLKPGLTIVVSPLIS 77
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKA---LRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L +G+ A FL S + +++ + G ++YV PE ++ + ++ L+
Sbjct: 78 LMQDQVESLKDNGIAATFLNSTLDLTETRRRSTDIILGKIKLLYVAPERLLSEKFLEFLE 137
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
++ +GI+ FAIDE HCVS+WGHDFRP+YR+L +LRE + D+P+MALTAT
Sbjct: 138 LISSQQGISTFAIDEAHCVSEWGHDFRPEYRQLKLLRETYP---------DVPIMALTAT 188
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLI 393
AT +VREDI L++ K + SFFR NL + V+ KTS++ ++ + Q+I
Sbjct: 189 ATKRVREDITTQLNLQKPYIHI-ASFFRSNLYYEVRQ-KTSAKNTF-AEILQII 239
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 145/283 (51%), Gaps = 15/283 (5%)
Query: 491 ERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQ 550
++T N AE L +++ G I+Y +RK IA L V A AY+A + +
Sbjct: 224 QKTSAKNTFAEILQIIRTI--GGSGIVYCNSRKRVDEIAYKLRQNNVSALAYHAGMTDEE 281
Query: 551 LRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLA 610
T+F + ++V+VAT+AFGMGIDK +VR +IHY +++E YYQE GR+GRDG A
Sbjct: 282 RTTNQTKFIRDDVDVIVATVAFGMGIDKPDVRFVIHYDLSKNIEGYYQETGRSGRDGEPA 341
Query: 611 DCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDF 667
C+L Y + S+ L+ + E + + A + L Y T CR ++L+ YFGEDF
Sbjct: 342 QCILFFSYGDKRSIEYLIGQKVDEQEQRIAEQQLRRIINYAEATE-CRHRVLLSYFGEDF 400
Query: 668 SHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDR 727
C CD C P +++ EA + +A E+ D + G K QK +DR
Sbjct: 401 PG-NCGNCDNC-KYPKPIEDWTIEAMKFLSCVARTKERFGMTYIID-VLRGSKSQKILDR 457
Query: 728 PNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
+ ++ I + AT+ W+ LA+ + ++G + E D
Sbjct: 458 RHDQLSTYGIGKDR----ATE--EWKNLAKSLLHQGLMDETAD 494
>gi|222637699|gb|EEE67831.1| hypothetical protein OsJ_25607 [Oryza sativa Japonica Group]
Length = 905
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 136/215 (63%), Gaps = 10/215 (4%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ + LK +FG S +++Q+E + L DCLV+ ATGSGKS+C+QIP L+T K VV+S
Sbjct: 1 MEAALKTYFGFSGFRSYQREIIQKVLEGRDCLVVMATGSGKSICYQIPPLVTKKTAVVVS 60
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
PL+SLM DQ L +HGV + +LGS Q D V +A +G + ++Y+ PE + L
Sbjct: 61 PLLSLMQDQVMSLKQHGVKSEYLGSTQTDISVSGQAEKGAFDVLYMTPEKAVSLPSRFWS 120
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
++ GI L A+DE HC+S+WGHDFR +Y++L +LR+ L +P +ALTATA
Sbjct: 121 NLQAAGICLLAVDEAHCISEWGHDFRTEYKQLHMLRD---------LLVGVPFVALTATA 171
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
T +VR DI SL + + V+ SF RPNL + VK
Sbjct: 172 TQRVRGDIATSLTL-RIPHIVVGSFDRPNLFYGVK 205
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 17/225 (7%)
Query: 489 SFERTDLLN--KPAER-LSMLQEPLED--------GLTIIYVPTRKETLSIAKYLCGFGV 537
SF+R +L K R ++ + E ++D G TIIY T +ET + + L G+
Sbjct: 194 SFDRPNLFYGVKSCNRSMAFINELVKDVSKNCTVGGSTIIYCTTIRETEQVHEALVAAGI 253
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
K++ Y+ + H F +++ V+VATIAFGMGIDK +VR +IHYG P+SLE+YY
Sbjct: 254 KSSIYHGRMGNKAREESHRSFVRDEVLVMVATIAFGMGIDKPDVRCVIHYGCPKSLESYY 313
Query: 598 QEAGRAGRDGHLADCVLYANLSS-MPTLLPSRRSEDQTKQAYRMLS--DCFRYGMNTSCC 654
QE+GR GRDG + C LY S M + ++ QT + M S +Y + +C
Sbjct: 314 QESGRCGRDGLPSVCWLYYQRSDFMKSDFYCAEAKSQTHRKAIMESFMAAQKYCLLATCH 373
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
R K L++YFGED + + C C+ C E ++L +E+ +L+ I
Sbjct: 374 R-KFLLQYFGEDRTTD-CGNCENCTRTKNE-RDLSKESFLLLSCI 415
>gi|115474113|ref|NP_001060655.1| Os07g0681600 [Oryza sativa Japonica Group]
gi|33146670|dbj|BAC80016.1| putative ATP-dependent DNA helicase recQ [Oryza sativa Japonica
Group]
gi|113612191|dbj|BAF22569.1| Os07g0681600 [Oryza sativa Japonica Group]
gi|215707030|dbj|BAG93490.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 886
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 136/215 (63%), Gaps = 10/215 (4%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ + LK +FG S +++Q+E + L DCLV+ ATGSGKS+C+QIP L+T K VV+S
Sbjct: 1 MEAALKTYFGFSGFRSYQREIIQKVLEGRDCLVVMATGSGKSICYQIPPLVTKKTAVVVS 60
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
PL+SLM DQ L +HGV + +LGS Q D V +A +G + ++Y+ PE + L
Sbjct: 61 PLLSLMQDQVMSLKQHGVKSEYLGSTQTDISVSGQAEKGAFDVLYMTPEKAVSLPSRFWS 120
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
++ GI L A+DE HC+S+WGHDFR +Y++L +LR+ L +P +ALTATA
Sbjct: 121 NLQAAGICLLAVDEAHCISEWGHDFRTEYKQLHMLRD---------LLVGVPFVALTATA 171
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
T +VR DI SL + + V+ SF RPNL + VK
Sbjct: 172 TQRVRGDIATSLTL-RIPHIVVGSFDRPNLFYGVK 205
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 152/293 (51%), Gaps = 24/293 (8%)
Query: 489 SFERTDLLN--KPAER-LSMLQEPLED--------GLTIIYVPTRKETLSIAKYLCGFGV 537
SF+R +L K R ++ + E ++D G TIIY T +ET + + L G+
Sbjct: 194 SFDRPNLFYGVKSCNRSMAFINELVKDVSKNCTVGGSTIIYCTTIRETEQVHEALVAAGI 253
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
K++ Y+ + H F +++ V+VATIAFGMGIDK +VR +IHYG P+SLE+YY
Sbjct: 254 KSSIYHGRMGNKAREESHRSFVRDEVLVMVATIAFGMGIDKPDVRCVIHYGCPKSLESYY 313
Query: 598 QEAGRAGRDGHLADCVLYANLSS-MPTLLPSRRSEDQTKQAYRMLS--DCFRYGMNTSCC 654
QE+GR GRDG + C LY S M + ++ QT + M S +Y + +C
Sbjct: 314 QESGRCGRDGLPSVCWLYYQRSDFMKSDFYCAEAKSQTHRKAIMESFMAAQKYCLLATCH 373
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDG 714
R K L++YFGED + + C C+ C E ++L +E+ +L+ I + + ++
Sbjct: 374 R-KFLLQYFGEDRTTD-CGNCENCTRTKNE-RDLSKESFLLLSCIKSCGGRWG-LNLPID 429
Query: 715 IYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ G + +K ++ K+ + + + Y WW+ L ++ Y++E
Sbjct: 430 VLRGSRVKKIVENNFDKL---PLHGRGKDYPPN---WWKALGGLLLAHDYLKE 476
>gi|449462782|ref|XP_004149119.1| PREDICTED: ATP-dependent DNA helicase RecQ-like [Cucumis sativus]
Length = 906
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 135/215 (62%), Gaps = 10/215 (4%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ ++LK +FG S+ + +QKE + L DCLV+ +TGSGKSLC+Q+P L+ GK +V+S
Sbjct: 1 MEAILKSYFGFSAFRLYQKEIIRDILLGKDCLVVMSTGSGKSLCYQVPPLVVGKTGIVVS 60
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
PLISLM DQ L + G+ + +LGS Q D+ V+ A G YSI+++ PE +
Sbjct: 61 PLISLMQDQVMALKQRGIKSEYLGSTQADSTVQANAESGQYSILFMTPEKACSVPMSFWS 120
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
+ GI LFA+DE HC+S+WGHDFR +Y++L LR+ D+P +ALTATA
Sbjct: 121 KLKKAGICLFAVDEAHCISEWGHDFRVEYKQLDKLRDVLP---------DLPFVALTATA 171
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
T +VR DI+ SL M K + + SF R NL + VK
Sbjct: 172 TEKVRSDIINSLKM-KDPQVTIGSFDRTNLFYGVK 205
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 136/258 (52%), Gaps = 16/258 (6%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G TIIY T K+ I K L G+ A Y+ + K H F ++++V+VAT+AF
Sbjct: 229 GSTIIYCTTIKDVEQIFKALEEAGISAGIYHGQMDKKSRAESHRLFIRDEVQVMVATVAF 288
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRR 629
GMGIDK N+R +IHYG P+SLE+YYQE+GR GRDG + C LY ++ + +
Sbjct: 289 GMGIDKPNIRLVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKADFYCGESQ 348
Query: 630 SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLK 689
+E+Q + L +Y + + CR L+ YFGE F +KC CD C+ E +++
Sbjct: 349 TENQRRAIRESLMAAQQY-CSIATCRRNFLLGYFGERFHSDKCGNCDNCIVSKKE-RDMS 406
Query: 690 EEANILMQVI-AAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLAT 747
+EA +L+ I + + ++ D I G + +K +D K+ + + +E S
Sbjct: 407 KEAFLLLACIQSCWGTWGLNIYVD--ILRGSRAKKILDTQFDKLPLHGLGKEYSSN---- 460
Query: 748 DLLWWRGLARIMENKGYI 765
WW+ LA + + G +
Sbjct: 461 ---WWKALASQLISNGSV 475
>gi|428781470|ref|YP_007173256.1| ATP-dependent DNA helicase RecQ [Dactylococcopsis salina PCC 8305]
gi|428695749|gb|AFZ51899.1| ATP-dependent DNA helicase RecQ [Dactylococcopsis salina PCC 8305]
Length = 713
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/230 (42%), Positives = 142/230 (61%), Gaps = 18/230 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK++FG+ + QK+ + A D LV+ TG GKSLC+Q+PALL + VV+SPLI+
Sbjct: 10 LKQYFGYDQFRPGQKDVIQAVCNQQDVLVVMPTGGGKSLCYQLPALLKPGLAVVVSPLIA 69
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVIR--LIKPLQ 279
LM DQ L K+G+ A FL S N+ + L+G ++Y+ PE ++ K LQ
Sbjct: 70 LMQDQVESLQKNGIAATFLNSSLNPNEARSRRLSILQGNIKLLYLAPEKLVSSGAKKFLQ 129
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
++E +G++LFA+DE HC+S+WGHDFRP+YR+L LR+ F ++P +ALTAT
Sbjct: 130 AVSEKQGLSLFAVDEAHCISEWGHDFRPEYRQLETLRQQFP---------EVPTIALTAT 180
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDF 389
AT QVR DI++ L + K K +TSF RPNL + V+ + R Y + F
Sbjct: 181 ATEQVRGDIIRQLKL-KPPKIQITSFDRPNLYYEVQPKQ---RQHYNQLF 226
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 131/264 (49%), Gaps = 15/264 (5%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
++G I+Y +R+ +A L G+ A Y+A + R T F + ++V+VATI
Sbjct: 232 QNGSGIVYCLSRRRVEEVAFRLEKDGISALPYHAGMTDGNRRDYQTRFLRDDVQVMVATI 291
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPS 627
AFGMGIDK ++R + HY P++LE YYQEAGRAGRD A C+L ++ ++ L+
Sbjct: 292 AFGMGIDKPDIRFVAHYDLPRNLENYYQEAGRAGRDNEPAQCLLLFGAKDIHTIEYLISQ 351
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKN 687
+ E + A + L Y T CR I + YFGE F+ C CD C++ P +++
Sbjct: 352 KEEEKSQRLARQQLRKMIDYAEGTD-CRRTIQLSYFGEHFAG-NCGNCDNCLN-PKPIED 408
Query: 688 LKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLA 746
EA + +A E+ M I G K +K + + I +E++ +
Sbjct: 409 WTVEAQKFLSCVARCRERF-GMSHIIDILRGSKNKKIEKNGHHLLSTYGIGKEKTTEE-- 465
Query: 747 TDLLWWRGLARIMENKGYIREGDD 770
WR LAR + ++ I E D
Sbjct: 466 -----WRNLARSLLHQNLITETTD 484
>gi|281420257|ref|ZP_06251256.1| ATP-dependent DNA helicase RecQ [Prevotella copri DSM 18205]
gi|281405752|gb|EFB36432.1| ATP-dependent DNA helicase RecQ [Prevotella copri DSM 18205]
Length = 620
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 138/224 (61%), Gaps = 17/224 (7%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
+++N +LK +FG+ S + Q+ + + HDCLVL TG GKSLC+Q+PAL VV
Sbjct: 1 MQINEILKSYFGYDSFRPNQEAIIKEVMQGHDCLVLMPTGGGKSLCYQVPALAMEGTAVV 60
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLI 275
ISPLISLMHDQ L +G+ A L SG + ++ +G ++YV PE +LI
Sbjct: 61 ISPLISLMHDQVEALKANGIPAEALNSGNDTTDELIIRRRCEKGELKLLYVSPE---KLI 117
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
+ L + I+LFA+DE HC+S+WGHDFRP+Y +L +L ENF ++P+MA
Sbjct: 118 SEIPYLFSNIKISLFAVDEAHCISQWGHDFRPEYSQLGMLHENFR---------NVPVMA 168
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT 379
LTATA REDI++ LH++ G FV +SF RPNL +V+ T
Sbjct: 169 LTATADKITREDIIRQLHLN-GQTFV-SSFDRPNLSLTVRQEST 210
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVA 568
P E G IIY +RK T +A+ L G+ AAAY+A + V F ++++VV A
Sbjct: 226 PEEAG--IIYCLSRKNTEMVAQELIDLGINAAAYHAGMTAQTRASVQERFKMDQIQVVCA 283
Query: 569 TIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSR 628
TIAFGMGIDK NVR +IHY P+S+E++YQE GRAGRDG +D VL+ +++ + TL
Sbjct: 284 TIAFGMGIDKSNVRWVIHYNMPKSIESFYQEIGRAGRDGAPSDTVLFYSMADIITLRSFC 343
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
Q L Y + CR +IL+ YFGE S C CDVC + P
Sbjct: 344 EESGQRDVNMEKLRRMEEYA-ESRVCRRRILLNYFGET-SSCNCGNCDVCKNPP 395
>gi|323345242|ref|ZP_08085465.1| ATP-dependent helicase RecQ [Prevotella oralis ATCC 33269]
gi|323093356|gb|EFZ35934.1| ATP-dependent helicase RecQ [Prevotella oralis ATCC 33269]
Length = 615
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 141/241 (58%), Gaps = 20/241 (8%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
+K +LKK++G++S + Q++ + + DC VL TG GKS+C+QIPAL VV
Sbjct: 1 MKAIDILKKYYGYNSFRPNQEKIIQEIIQGQDCFVLMPTGGGKSICYQIPALAMQGTAVV 60
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLI 275
+SPLISLMHDQ L +G+ A L S D + +K + G +IYV PE RLI
Sbjct: 61 VSPLISLMHDQVQALKTNGIAAEELNSVNDANQDTMIRRKCMSGELKLIYVSPE---RLI 117
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
+ L S I+LFAIDE HC+S+WGHDFRP+Y RL +LRE F IP++A
Sbjct: 118 SEIPHLFSSIHISLFAIDEAHCISQWGHDFRPEYARLGILREKFPT---------IPIIA 168
Query: 336 LTATATIQVREDILKSLHMSKG----TKFVLTSFFRPNLRFSVKHS-KTSSRASYKKDFC 390
LTATA REDI+K LH++ G + ++SF R NL SVK K ++ Y DF
Sbjct: 169 LTATADRITREDIIKQLHLNIGDDHKHRVFISSFDRSNLSLSVKRGYKKQAKMRYIVDFI 228
Query: 391 Q 391
+
Sbjct: 229 R 229
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 97/167 (58%), Gaps = 2/167 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK T S++ L G+ AA Y+A L + R+ F ++++V+ ATIAFGMG
Sbjct: 237 IIYCLSRKITESVSVELQKLGIDAATYHAGLSTGERTRIQNLFKNDQIQVICATIAFGMG 296
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK N+R +IHY P+S+E +YQE GRAGRDG AD VL+ +LS + L Q
Sbjct: 297 IDKSNIRWVIHYNLPKSIENFYQEIGRAGRDGAPADTVLFYDLSDIVMLRKFAIESRQHN 356
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
L+ +Y +S CR +IL+ YF E H+ C CDVC P
Sbjct: 357 LNMEKLNYMRQYA-ESSVCRRRILLNYFNEQTDHD-CGNCDVCTHPP 401
>gi|449517403|ref|XP_004165735.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Cucumis
sativus]
Length = 919
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 136/215 (63%), Gaps = 10/215 (4%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ ++LK +FG S+ + +QKE + L DCLV+ +TGSGKSLC+Q+P L+ GK +V+S
Sbjct: 1 MEAILKSYFGFSAFRLYQKEIIRDILLGKDCLVVMSTGSGKSLCYQVPPLVVGKTGIVVS 60
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
PLISLM DQ L + G+ + +LGS Q D+ V+ KA G Y+++++ PE +
Sbjct: 61 PLISLMQDQVMALKQRGIKSEYLGSTQTDSTVQAKAESGQYNVLFMTPEKACSVPMSFWS 120
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
+ GI LFA+DE HC+S+WGHDFR +Y++L LR+ D+P +ALTATA
Sbjct: 121 KLKKAGICLFAVDEAHCISEWGHDFRVEYKQLDKLRDVLP---------DLPFVALTATA 171
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
T +VR DI+ SL M K + + SF R NL + VK
Sbjct: 172 TEKVRSDIINSLKM-KDPQVTIGSFDRTNLFYGVK 205
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 137/258 (53%), Gaps = 16/258 (6%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G TIIY T K+ I K L G+ A Y+ + K H F ++L+V+VATIAF
Sbjct: 229 GSTIIYCTTIKDVEQIFKALEEAGISAGIYHGQMDKKSRAESHRLFIRDELQVMVATIAF 288
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRR 629
GMGIDK N+R++IHYG P+SLE+YYQE+GR GRDG + C LY ++ + +
Sbjct: 289 GMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKADFYCGESQ 348
Query: 630 SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLK 689
+E+Q + L +Y + + CR L+ YFGE F +KC CD C+ E +++
Sbjct: 349 TENQRRAIRESLMAAQQY-CSIATCRRNFLLGYFGERFHSDKCGNCDNCIVSKKE-RDMS 406
Query: 690 EEANILMQVI-AAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLAT 747
+EA +L+ I + + +M D I G + +K +D K+ + + +E S
Sbjct: 407 KEAFLLLACIQSCRGKWGLNMPVD--ILRGSRAKKILDTQFDKLPLHGLGKEYSSN---- 460
Query: 748 DLLWWRGLARIMENKGYI 765
WW+ LA + + G +
Sbjct: 461 ---WWKALASQLISNGSV 475
>gi|332531260|ref|ZP_08407173.1| ATP-dependent DNA helicase RecQ [Hylemonella gracilis ATCC 19624]
gi|332039367|gb|EGI75780.1| ATP-dependent DNA helicase RecQ [Hylemonella gracilis ATCC 19624]
Length = 616
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 138/224 (61%), Gaps = 19/224 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVI 219
+L+ FG+++ + Q+ + D LVL TG GKSLC+QIPA+ + V +V+
Sbjct: 9 ILRDVFGYAAFRGPQQPIVDHVTTGGDALVLMPTGGGKSLCYQIPAIARQQAGLGVTIVV 68
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPE--TVIRL 274
SPLI+LMHDQ L + GV A FL S G+ +VE+K LRG ++++Y PE T R
Sbjct: 69 SPLIALMHDQVGALHEAGVEAAFLNSSLGGEEAAQVEKKLLRGEFTLLYAAPERLTTPRF 128
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ L+ L E +ALFAIDE HCVS+WGHDFRP+YR LSVL E F +P +
Sbjct: 129 LALLEALRERGQLALFAIDEAHCVSQWGHDFRPEYRALSVLHERFAG---------VPRI 179
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
ALTATA REDI++ L + + +FV +SF RPN+R+++ K
Sbjct: 180 ALTATADALTREDIVERLQLQEARQFV-SSFDRPNIRYTIVEKK 222
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 111/228 (48%), Gaps = 7/228 (3%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L ++ E I+Y +RK +A+ L GV A Y+A L S +R F +
Sbjct: 229 LRFIEREHEGDAGIVYCQSRKRVEEVARQLVEAGVHALPYHAGLDASVRQRHQDRFLREE 288
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622
V+VATIAFGMGIDK +VR + H P+++E YYQE GRAGRDG AD + L +
Sbjct: 289 GLVMVATIAFGMGIDKPDVRFVAHLDMPKNIEGYYQETGRAGRDGERADAWMVYGLQDVV 348
Query: 623 T---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
++ + ++ KQ R D + CR L+ YFGE E C CD C+
Sbjct: 349 NQRRMIDESPAAEEFKQVLRGKLDALLALAEATDCRRVRLLHYFGE--HSEPCGNCDNCL 406
Query: 680 DGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDR 727
PP +++ E A L+ I +Q+N + G I + K D+
Sbjct: 407 S-PPAIRDGTELARKLLSCIYRV-QQANGISFGAGHLMDILRGKDTDK 452
>gi|443309958|ref|ZP_21039633.1| ATP-dependent DNA helicase RecQ [Synechocystis sp. PCC 7509]
gi|442780011|gb|ELR90229.1| ATP-dependent DNA helicase RecQ [Synechocystis sp. PCC 7509]
Length = 724
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/248 (41%), Positives = 148/248 (59%), Gaps = 22/248 (8%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ S LKK+FG++S + Q++ + L + D LV+ TG GKSLCFQ+PALL + VV+S
Sbjct: 7 LESTLKKYFGYTSFRLGQQQIIEQALNNQDLLVVMPTGGGKSLCFQLPALLRKGLTVVVS 66
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLI 275
PLI+LM DQ L +G+ A FL S +V E+ L G ++YV PE ++ R +
Sbjct: 67 PLIALMQDQVQSLRNNGIGATFLNSTLTTYQVRSREEAILSGKVKLLYVAPERLLSDRFL 126
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
+ + GIA FAIDE HCVS+WGHDFRPDYR+L LR+ + ++P +A
Sbjct: 127 PFIDLVQHQIGIASFAIDEAHCVSEWGHDFRPDYRQLRALRQRYP---------NVPTIA 177
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDI 395
LTATAT +VR DI++ L+++K V SF RPNL + V+ + K+ + QL +
Sbjct: 178 LTATATDRVRSDIIQQLNLTKPIIHV-ASFNRPNLYYDVQPKQ-------KQAYNQLKQL 229
Query: 396 YTKKKKTG 403
TK + G
Sbjct: 230 VTKHEGAG 237
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 90/160 (56%), Gaps = 4/160 (2%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G IIY +R++ I L G+ A Y+A L ++ T F + ++VAT+A
Sbjct: 234 EGAGIIYCLSRRKVDDITMKLQQDGISALPYHAGLSDAERESNQTRFIRDDARLMVATVA 293
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSR 628
FGMGI+K +VR +IHY P+++E+YYQE+GRAGRDG A C + Y ++ ++ L+ +
Sbjct: 294 FGMGINKPDVRFVIHYDLPRNIESYYQESGRAGRDGGAARCTIFFGYGDVKTVEYLIDQK 353
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
+ + A + L Y T CR I + YFGE F+
Sbjct: 354 TDVQEQRIAKQQLRQIIDYAQGT-VCRRTIQLGYFGESFA 392
>gi|302820099|ref|XP_002991718.1| hypothetical protein SELMODRAFT_41332 [Selaginella moellendorffii]
gi|300140567|gb|EFJ07289.1| hypothetical protein SELMODRAFT_41332 [Selaginella moellendorffii]
Length = 594
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 142/222 (63%), Gaps = 17/222 (7%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ LL+++FGHSS + Q +A+ A LA DC + TG+GKSLC+QIPAL +V+V+S
Sbjct: 1 LEELLQRYFGHSSFRGLQLDAIEAVLAGKDCFCMMPTGAGKSLCYQIPALAKPGIVLVVS 60
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGM--YSIIYVCPETVI--R 273
PLI+LM DQ + L + A +L S QP NK+ ++ G ++YV PE+V
Sbjct: 61 PLIALMEDQVAALKSRQIFAEYLSSSQPVKMRNKIFEELQSGKPNLKLLYVTPESVATNH 120
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
L++ L++L E ++L AIDE HC+S WGHDFRP YR+LS LR + DIP+
Sbjct: 121 LMQKLRKLHERSLLSLIAIDEAHCISSWGHDFRPSYRKLSALRTSLP---------DIPI 171
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+ALTATA+ +V+EDI+KSL + K +++SF R N+ + V+
Sbjct: 172 LALTATASKKVQEDIIKSLSLQKAA-VLISSFNRANIFYEVR 212
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 100/215 (46%), Gaps = 16/215 (7%)
Query: 494 DLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR 553
DL+ E L + IIY R I L G+ Y+A + +
Sbjct: 215 DLMKSAYEDLRNIITTAPTRCMIIYCHARAMCDEIGSRLKSDGISCRVYHAGINVKARSQ 274
Query: 554 VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV 613
++ ++ ++VATIAFG GID+ +VR + H+ P+SLE++YQE+GRAGRDG A +
Sbjct: 275 ALQDWVLGEVHIIVATIAFGYGIDRKDVRMVCHFNMPKSLESFYQESGRAGRDGKPAKSI 334
Query: 614 LYANLSSMPTLLPSRRSEDQTKQA--------------YRMLSDCFRYGMNTSCCRAKIL 659
LY ++ T+ RS Q +QA Y SC R ++L
Sbjct: 335 LYYSVDDKRTMEYVIRSSSQRQQAGISENGENELLKKNIEAFEKVVAYCEEASCRRRRVL 394
Query: 660 VEYFGEDFSHEKC-QLCDVCVDGPPEMKNLKEEAN 693
E+FGE+ S C + CD C ++LKE A+
Sbjct: 395 -EHFGENVSPLLCSKTCDACKWPEKLSRDLKELAD 428
>gi|302818699|ref|XP_002991022.1| hypothetical protein SELMODRAFT_41328 [Selaginella moellendorffii]
gi|300141116|gb|EFJ07830.1| hypothetical protein SELMODRAFT_41328 [Selaginella moellendorffii]
Length = 600
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 141/219 (64%), Gaps = 17/219 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LL+++FGHSS + Q +A+ A LA DC + TG+GKSLC+QIPAL +V+V+SPLI
Sbjct: 4 LLQRYFGHSSFRGLQLDAIEAVLAGKDCFCMMPTGAGKSLCYQIPALAKPGIVLVVSPLI 63
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGM--YSIIYVCPETVI--RLIK 276
+LM DQ + L + A +L S QP NK+ ++ G ++YV PE+V L++
Sbjct: 64 ALMEDQVAALKSRQIFAEYLSSSQPVKMRNKIFEELQSGKPNLKLLYVTPESVATNHLMQ 123
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L++L E ++L AIDE HC+S WGHDFRP YR+LS LR + DIP++AL
Sbjct: 124 KLRKLHERSLLSLIAIDEAHCISSWGHDFRPSYRKLSALRTSLP---------DIPILAL 174
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
TATA+ +V+EDI+KSL + K +++SF R N+ + V+
Sbjct: 175 TATASKKVQEDIIKSLSLQKAA-VLISSFNRANIFYEVR 212
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 99/215 (46%), Gaps = 16/215 (7%)
Query: 494 DLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR 553
DL+ E L + IIY R I L G+ Y+A + +
Sbjct: 215 DLMTSAYEDLRNIITKAPTRCMIIYCHARAMCDEIGSRLKSDGISCRVYHAGINVKARSQ 274
Query: 554 VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV 613
++ ++ ++VATIAFG GID+ +VR + H+ P+SLE++YQE+GRAGRDG A +
Sbjct: 275 ALQDWVLGEVHIIVATIAFGYGIDRKDVRMVCHFNMPKSLESFYQESGRAGRDGKPAKSI 334
Query: 614 LYANLSSMPTLLPSRRSEDQTKQA--------------YRMLSDCFRYGMNTSCCRAKIL 659
LY ++ T+ RS Q +Q Y SC R ++L
Sbjct: 335 LYYSVDDKRTMEYVIRSSSQRQQGGISENGENELLKKNIEAFEKVVAYCEEASCRRRRVL 394
Query: 660 VEYFGEDFSHEKC-QLCDVCVDGPPEMKNLKEEAN 693
E+FGE+ S C + CD C ++LKE A+
Sbjct: 395 -EHFGENVSPLLCSKTCDACKWPEKLSRDLKELAD 428
>gi|449462784|ref|XP_004149120.1| PREDICTED: ATP-dependent DNA helicase RecQ-like [Cucumis sativus]
Length = 822
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 134/215 (62%), Gaps = 10/215 (4%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ ++LK++FG S+L+ +QKE + + L DCLV+ TGSGKSLC+Q+P L+ GK +V+S
Sbjct: 1 MEAILKRYFGFSALRPYQKEVIQSILRGKDCLVVTGTGSGKSLCYQVPPLVVGKTGIVVS 60
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
PL+SLM DQ L + G+ + +LGS Q D+ V+ A G YSI+++ PE L
Sbjct: 61 PLVSLMQDQVMALKQRGIKSEYLGSTQADSTVQANAESGQYSILFMTPEKACSLPMSFWS 120
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
+ GI LFA+DE HC+S WGH+FR +Y L +N + + +P +ALTATA
Sbjct: 121 KLKKAGICLFAVDEAHCISDWGHNFRAEYELL---------DNFRDILPGLPFVALTATA 171
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+ +VR DI+ SL M K + + SF R NL + VK
Sbjct: 172 SEKVRNDIINSLKM-KDPQVTIGSFDRTNLFYGVK 205
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 147/294 (50%), Gaps = 25/294 (8%)
Query: 489 SFERTDLLNKPA---ERLSMLQEPLED--------GLTIIYVPTRKETLSIAKYLCGFGV 537
SF+RT+L R ++ E + D G TIIY T K+ I+K L G+
Sbjct: 194 SFDRTNLFYGVKFFNHRRLLMNELVLDISKYVGSGGSTIIYCRTIKDVEQISKSLKEAGI 253
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
A Y+A + K H F ++L+V+VAT+AFGMGIDK N+R +IHYG P+SLE+YY
Sbjct: 254 SAGIYHAQMVKESRAESHRLFVRDELQVMVATVAFGMGIDKPNIRLVIHYGCPKSLESYY 313
Query: 598 QEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCC 654
QE+GR GRDG + C LY ++ + +E++ L +Y + + C
Sbjct: 314 QESGRCGRDGIASVCWLYYTRSDFAKAELYCGDSPTENERTAIMESLMAAQQY-CSIATC 372
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI-AAYNEQSNSMDDDD 713
R L+ Y GE EKC CD C+ E +++ +EA +L+ I + + ++ D
Sbjct: 373 RRNFLLGYLGEKSQSEKCGNCDNCIVSKKE-RDMSKEAFLLLACIQSCWGTWGLNIYVDI 431
Query: 714 GIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIRE 767
S KK ++ L ++ RE S K WW+ LA + + GY+ E
Sbjct: 432 LRGSTEKKIRYAQFDKLPLY-GLGREYSSK-------WWKALASQLISNGYLTE 477
>gi|365119359|ref|ZP_09337481.1| ATP-dependent DNA helicase RecQ [Tannerella sp. 6_1_58FAA_CT1]
gi|363648680|gb|EHL87834.1| ATP-dependent DNA helicase RecQ [Tannerella sp. 6_1_58FAA_CT1]
Length = 709
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 133/217 (61%), Gaps = 16/217 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LKK++G+ + + Q E + ++ DCLVL TG GKSLC+QIPA++ G VV+SPL+
Sbjct: 11 ILKKYYGYDTFRLQQAEIIDTIISGRDCLVLMPTGGGKSLCYQIPAIIKGGTTVVVSPLL 70
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LM DQ L +G+ A L S Q + KV+ A RG ++Y+ PE RL+ +
Sbjct: 71 ALMKDQVDTLDSNGIPAAMLNSLQNETETVKVKIAARRGDLRLLYISPE---RLMGEIDG 127
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L I+LFAIDE HC+S+WGHDFRP+Y RLSVL++ F +PLMALTATA
Sbjct: 128 LLREMNISLFAIDEAHCISQWGHDFRPEYNRLSVLKKYFP---------KVPLMALTATA 178
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHS 377
REDI+ L M F+ +SF RPNL SV+ +
Sbjct: 179 DKLTREDIVTQLAMDNPQVFI-SSFDRPNLTLSVRKN 214
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 110/207 (53%), Gaps = 16/207 (7%)
Query: 489 SFERTDL-------LNKPAERLSML----QEPLEDGLTIIYVPTRKETLSIAKYLCGFGV 537
SF+R +L LNK + ++L Q P + G IIY +R T + + L +G+
Sbjct: 201 SFDRPNLTLSVRKNLNKKQKLSAILSFIEQHPRQSG--IIYCMSRNSTEILVRELSQYGI 258
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
AY+A L + F ++++++ ATIAFGMGIDK NVR +IHY P+S+E YY
Sbjct: 259 SVTAYHAGLSSRERETAQQAFLNDRVQIICATIAFGMGIDKSNVRWVIHYNMPKSIECYY 318
Query: 598 QEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
QE GRAGRDG D +L+ +L + L Q K L +Y + CR +
Sbjct: 319 QEIGRAGRDGMKGDTLLFYSLGDVVMLSKFAEESGQKKINLEKLRRMQQYA-ESPICRRR 377
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDGPPE 684
IL+ YFGE H+ C CDVC PP+
Sbjct: 378 ILLSYFGETVDHD-CGNCDVC-KNPPQ 402
>gi|294673710|ref|YP_003574326.1| ATP-dependent DNA helicase RecQ [Prevotella ruminicola 23]
gi|294473219|gb|ADE82608.1| ATP-dependent DNA helicase RecQ [Prevotella ruminicola 23]
Length = 607
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/254 (40%), Positives = 148/254 (58%), Gaps = 22/254 (8%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ +L+++FG+SS + Q+E + +A +D LVL TG GKS+C+QIPAL + +VIS
Sbjct: 3 IFGILRQYFGYSSFRQNQEEIIRHVIAGNDALVLMPTGGGKSICYQIPALALPGITIVIS 62
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKP 277
PLISLM DQ L +G+ A L SG D + +K L G ++Y+ PE +L+
Sbjct: 63 PLISLMKDQVETLRSNGIEAEALNSGNDPTLDTVIRRKCLAGQIKLLYISPE---KLLAE 119
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
+ + I+LFAIDE HC+S WGHDFRP+Y +L VLRE F ++P+MALT
Sbjct: 120 MDYFMQHLQISLFAIDEAHCISHWGHDFRPEYTQLGVLREKFP---------NVPMMALT 170
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHS-KTSSRASYKKDFCQLID-- 394
ATA R+DIL L + +FV +SF RPNL SVK K++ + + +F +
Sbjct: 171 ATADKITRQDILTQLKLRNAREFV-SSFDRPNLSLSVKRGYKSAEKMHFILNFIKARPND 229
Query: 395 ---IYTKKKKTGEK 405
IY +KT EK
Sbjct: 230 AGIIYCLSRKTTEK 243
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 99/169 (58%), Gaps = 3/169 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK T +A L G+ AAAY+A L + + +F ++L VV ATIAFGMG
Sbjct: 232 IIYCLSRKTTEKVAADLRKKGINAAAYHAGLSSLERSQTQEQFKNDQLLVVCATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG AD VL+ +L+ + L R Q
Sbjct: 292 IDKSNVRWVIHYNMPKSIESFYQEIGRAGRDGAPADTVLFYSLADIIQLTEFARQSGQQD 351
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
L Y ++ CR +IL+ YF E H+ C CDVC D PP+
Sbjct: 352 VNMDKLKRMQEYA-ESNVCRRRILLNYFSEQTDHD-CGNCDVC-DNPPQ 397
>gi|443476000|ref|ZP_21065927.1| ATP-dependent DNA helicase RecQ [Pseudanabaena biceps PCC 7429]
gi|443019101|gb|ELS33248.1| ATP-dependent DNA helicase RecQ [Pseudanabaena biceps PCC 7429]
Length = 769
Score = 183 bits (464), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 139/226 (61%), Gaps = 16/226 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK++FG+ S + Q+E + A LA D L + TG GKS+CFQ+PALL V +V+SPLI+
Sbjct: 38 LKQYFGYESFRAGQREIIDAHLAGRDTLAIMPTGGGKSICFQLPALLKTGVTIVVSPLIA 97
Query: 225 LMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ + L ++G+ A FL SG+ N+ Q L G +IYV PE + + I+ L
Sbjct: 98 LMQDQVTALKENGIGATFLNSTLSGRETNQRSQAILNGAIKLIYVAPERLFAEQFIEFLN 157
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ GIA FAIDE HCVS+WGHDFRP+YR+LS LR+ + D+P++ LTAT
Sbjct: 158 IVKNKIGIAGFAIDEAHCVSEWGHDFRPEYRQLSRLRQFYP---------DVPVIGLTAT 208
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASY 385
AT +VREDI++ L + + V SF R NL + V K + SY
Sbjct: 209 ATERVREDIIQQLDLQQPYVHV-ASFNRDNLYYEVV-PKQGTEQSY 252
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 135/275 (49%), Gaps = 34/275 (12%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G I+Y +RK IA+ L G+ A Y+A L + T + + ++V+VATIAF
Sbjct: 264 GSGIVYCLSRKRVNEIAERLREDGIAAIPYHAGLSAKEREENQTRWIRDDVQVMVATIAF 323
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRR 629
GMGI+K +VR +IHY P+++E YYQE+GRAGRDG + C L Y +L ++ L+ +
Sbjct: 324 GMGINKPDVRFVIHYDLPKNIEGYYQESGRAGRDGEDSHCTLFLGYQDLETIKYLIAQKV 383
Query: 630 S-------EDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
E + + A + L Y + CR IL+ YFGE FS + C CD C+ P
Sbjct: 384 DPHTNEPLEAEQRIAQQQLRQVVDYAEGLA-CRRTILLRYFGEHFSGD-CANCDNCLT-P 440
Query: 683 PEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQ 742
M++ E+ + +A E+ + D + + K KI +
Sbjct: 441 KPMEDWTVESQKFLSCVARVKERFGAGQIIDILRGSLNK--------------KILQHGH 486
Query: 743 KYLAT-------DLLWWRGLARIMENKGYIREGDD 770
+ L+T L WR L+R + ++GY+ + D
Sbjct: 487 ENLSTHGIGKDRSLDEWRQLSRSLIHQGYLTQTTD 521
>gi|356569961|ref|XP_003553162.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Glycine
max]
Length = 920
Score = 182 bits (462), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 129/213 (60%), Gaps = 10/213 (4%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LKK+FG S + +Q+E + + DCLV+ ATGSGKSLC+Q+P L+ K +V+SPL
Sbjct: 8 SVLKKYFGFSDFRPYQREVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVAKKTGIVVSPL 67
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLA 282
ISLM DQ L + G+ A +LGS Q D V KA G + I+++ PE +
Sbjct: 68 ISLMQDQVMALKQRGIKAEYLGSAQKDFTVHSKAEHGQFDILFMTPEKACTVPSSFWSNL 127
Query: 283 ESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATI 342
GI+LFA+DE HC+S+WGHDFR +Y+ L LRE + D+P + LTATAT
Sbjct: 128 LKAGISLFAVDEAHCISEWGHDFRVEYKHLDKLRE---------VLLDVPFVGLTATATE 178
Query: 343 QVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+VR DI+ SL ++ + SF R NL + VK
Sbjct: 179 KVRYDIISSLKLN-NPYVTIGSFDRTNLFYGVK 210
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 150/294 (51%), Gaps = 25/294 (8%)
Query: 489 SFERTDL------LNKPAERLSML-----QEPLEDGLTIIYVPTRKETLSIAKYLCGFGV 537
SF+RT+L LN+ + L +E G TIIY T K+ I K G+
Sbjct: 199 SFDRTNLFYGVKLLNRGQSFIDELVREISKEVTNGGSTIIYCTTIKDVEQIFKSFAEAGI 258
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
+A Y+ + H F ++L+V+VATIAFGMGIDK N+R++IHYG P+SLE+YY
Sbjct: 259 EAGMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGIDKPNIRQVIHYGCPKSLESYY 318
Query: 598 QEAGRAGRDGHLADCVLYANLSSMPT---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCC 654
QE+GR GRDG + C LY S +SE Q K L RY + T+ C
Sbjct: 319 QESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDVKSEKQRKAIMESLLAAERYCVLTT-C 377
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI-AAYNEQSNSMDDDD 713
R K L+EYFGE F ++C CD C E +++ EA +LM I + +M D
Sbjct: 378 RRKFLLEYFGEKFPADRCGNCDNCKISRKE-RDMSREAFLLMACIHSCRGIWGLNMPID- 435
Query: 714 GIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ G + +K +D K+ + + + Y A WW+ L + ++GY++E
Sbjct: 436 -VLRGSRAKKILDVQFDKLPLHGL---GKNYPAN---WWKALRHQLISQGYLKE 482
>gi|428320783|ref|YP_007118665.1| ATP-dependent DNA helicase RecQ [Oscillatoria nigro-viridis PCC
7112]
gi|428244463|gb|AFZ10249.1| ATP-dependent DNA helicase RecQ [Oscillatoria nigro-viridis PCC
7112]
Length = 731
Score = 182 bits (462), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 141/244 (57%), Gaps = 22/244 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK FG+ S + Q+E + A L D +++ TG GKSLCFQ+PALL + VV+SPLI+
Sbjct: 19 LKHFFGYDSFRPGQQEIVEAALQKRDMMIVMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 78
Query: 225 LMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L +G+ A FL S Q E L G ++YV PE ++ R + L
Sbjct: 79 LMQDQVEALQDNGIGATFLNSTLSTQETRSRETAILEGKIKLLYVAPERLLGERFLPFLD 138
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+A GI+ FAIDE HCVS+WGHDFRP+YR++ +R+ + DIP+MALTAT
Sbjct: 139 IVANKLGISAFAIDEAHCVSEWGHDFRPEYRQMQRVRDRYP---------DIPIMALTAT 189
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKK 399
AT +VR+DI++ L + + + SF RPNL + V R K F +++ I KK
Sbjct: 190 ATERVRQDIIQQLTL-RNPYIHVASFNRPNLYYEV-------RPKTKHSFAEVLQIIQKK 241
Query: 400 KKTG 403
+G
Sbjct: 242 GGSG 245
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 139/274 (50%), Gaps = 15/274 (5%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
AE L ++Q+ + G IIY +RK+ +A L G+ A Y+A + T F
Sbjct: 232 AEVLQIIQK--KGGSGIIYCLSRKKVEEVAYKLQQSGIAALPYHAGMNDVDRATNQTRFI 289
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YA 616
+ ++V+VATIAFGMGI+K +VR +IHY P++LE YYQE+GRAGRD A C L Y
Sbjct: 290 RDDVQVMVATIAFGMGINKPDVRFVIHYDLPKNLEGYYQESGRAGRDNEPAHCSLFFGYG 349
Query: 617 NLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCD 676
++ + ++ + + + A + L Y +T CR I + YFG+ F C CD
Sbjct: 350 DVKMIDYIIEQKPDPQEQRIARQQLRRVINYAESTD-CRRTIQLSYFGDSFPG-NCGTCD 407
Query: 677 VCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSK 736
C + P +++ EA + +A E+ M+ + G K QK + + K+
Sbjct: 408 NCCNQKP-VEDWTIEAMKFLSCVARCQEKF-GMNHIIDVLRGSKNQKILQYQHHKLSTYG 465
Query: 737 IREQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
I + A D W+ L+R + N+G++ E D
Sbjct: 466 IGKDRS---AED---WKKLSRSLLNQGFLDEKTD 493
>gi|242046956|ref|XP_002461224.1| hypothetical protein SORBIDRAFT_02g043160 [Sorghum bicolor]
gi|241924601|gb|EER97745.1| hypothetical protein SORBIDRAFT_02g043160 [Sorghum bicolor]
Length = 901
Score = 182 bits (461), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 136/215 (63%), Gaps = 10/215 (4%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ + LK +FG+S+ + +Q+E + L DCL + ATGSGKS+C+QIP L+T K VV+S
Sbjct: 1 MEAALKGYFGYSTFRPYQREIIQKVLDGRDCLAVMATGSGKSICYQIPPLVTKKTAVVVS 60
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
PL+SLM DQ L + GV + +LGS Q ++ V +A +G + ++Y+ PE I L
Sbjct: 61 PLLSLMQDQVMSLKQKGVKSEYLGSTQMNSSVSNEAEKGAFDVLYMTPEKAISLPSRFWS 120
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
++ GI L A+DE HC+S+WGHDFR +Y++L LR+ L D+P +ALTATA
Sbjct: 121 NLQAAGICLLAVDEAHCISEWGHDFRIEYKQLHSLRD---------LLVDVPFVALTATA 171
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
T +VR+DI SL + + V+ SF R NL + VK
Sbjct: 172 TERVRQDISTSLVL-RSPHVVVGSFDRHNLFYGVK 205
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 133/256 (51%), Gaps = 13/256 (5%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
TIIY T ++T + + L G+KA Y+ + H F +++ V+VATIAFGM
Sbjct: 231 TIIYCTTIRDTEQVHEALVTSGIKAGIYHGQMGSRAREESHRSFIRDEVLVMVATIAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT 634
GIDK +VR +IHYG P+SLE+YYQE+GR GRDG + C LY S T SE +
Sbjct: 291 GIDKPDVRCVIHYGCPKSLESYYQESGRCGRDGLPSICWLYYQRSDF-TKADFYCSEAKN 349
Query: 635 KQAYRMLSDCFRYGMN---TSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEE 691
+ + D F + CR + L++YFGE+ + C CD C E ++L +E
Sbjct: 350 GTQRKAIMDSFMAAQKYCLLATCRRRFLLQYFGEE-RNTDCGNCDNCTAVKNE-RDLSKE 407
Query: 692 ANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLW 751
A +L+ I + + ++ + G + +K +D+ K+ ++ + + Y + W
Sbjct: 408 AFLLLSCIKSCGGRWG-LNLPIDVLRGSRAKKIVDKNYDKL---QMHGRGKDYSSN---W 460
Query: 752 WRGLARIMENKGYIRE 767
W+ L ++ Y++E
Sbjct: 461 WKALGGLLIAYDYLKE 476
>gi|325982577|ref|YP_004294979.1| ATP-dependent DNA helicase RecQ [Nitrosomonas sp. AL212]
gi|325532096|gb|ADZ26817.1| ATP-dependent DNA helicase RecQ [Nitrosomonas sp. AL212]
Length = 651
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 142/226 (62%), Gaps = 20/226 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
+LLK+ FG+ + + Q E ++ DCLVL TG GKSLC+QIPALL V +V+SPL
Sbjct: 57 NLLKEVFGYPAFRGQQAEVIAHLAGGGDCLVLMPTGGGKSLCYQIPALLRNGVAIVVSPL 116
Query: 223 ISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVI--RLIKP 277
I+LMH+Q + L + GV A L S Q +VEQK L Y ++YV PE ++ R +
Sbjct: 117 IALMHNQVTALHEIGVRAAVLNSSLSQQEAIRVEQKLLADEYDLLYVAPERLLTARFLNL 176
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
+ R+ IALFAIDE HCVS+WGHDFRP+Y +LS+L E F A IP +ALT
Sbjct: 177 MTRIP----IALFAIDEAHCVSQWGHDFRPEYIQLSILHERFPA---------IPRIALT 223
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
ATA + R++I++ L + FV +SF RPN+R+ + KT+SR+
Sbjct: 224 ATADMDTRKEIIERLGLDLAKVFV-SSFDRPNIRYQII-DKTNSRS 267
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 106/212 (50%), Gaps = 21/212 (9%)
Query: 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
DR R ++ D N ++ L+ +Q I+Y +RK+ I +L G+ A AY
Sbjct: 251 DRPNIR-YQIIDKTNSRSQLLAFIQTEHPSDAGIVYCLSRKKVEEITLWLVKQGLNAVAY 309
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A + Q +F + ++VATIAFGMGIDK NVR + H P+S+E YYQE GR
Sbjct: 310 HAGMSMHQRSLNQEKFLREESIIMVATIAFGMGIDKPNVRFVAHLDLPKSIEGYYQETGR 369
Query: 603 AGRDGHLADCVLYANLSSMPTLLPSRR----SEDQTK-------QAYRMLSDCFRYGMNT 651
AGRDG A+ + L ++ RR SE Q K + MLS C T
Sbjct: 370 AGRDGQAANAWMAYGLGD---VIQQRRMIEESEAQVKFKQGAARKLEAMLSLC-----ET 421
Query: 652 SCCRAKILVEYFGEDF-SHEKCQLCDVCVDGP 682
+ CR ++ YFGE + C CD+C++ P
Sbjct: 422 TTCRRIRMLSYFGERIDTAAGCGNCDICLNPP 453
>gi|383934161|ref|ZP_09987603.1| ATP-dependent DNA helicase RecQ [Rheinheimera nanhaiensis E407-8]
gi|383704617|dbj|GAB57694.1| ATP-dependent DNA helicase RecQ [Rheinheimera nanhaiensis E407-8]
Length = 604
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 143/230 (62%), Gaps = 23/230 (10%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LLK+HFG+S ++ Q + A LA D VL TG GKSLC+Q+PALL +V +V+SPL+
Sbjct: 8 LLKQHFGYSEFRSGQHAVIEAALAGQDSFVLMPTGGGKSLCYQLPALLLPQVTIVVSPLM 67
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR---GMYSIIYVCPETVIRLIKP--L 278
SLM DQ L +G+ A F+ S +V Q R G ++YV PE RL++P L
Sbjct: 68 SLMKDQVDALKANGIAAEFVNSSLSREQVLQVFARLRQGTLKLLYVAPE---RLLQPQFL 124
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
RL + G++LFAIDE HC+S+WGHDFRPDY L++L++ F + +P+MALTA
Sbjct: 125 DRLQDV-GVSLFAIDEAHCISQWGHDFRPDYMALALLKQRFAS---------VPVMALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFV-LTSFFRPNLRFSV--KHSKTSSRASY 385
TA R+DIL+ L++ + +V L SF RPN+R++V K T SY
Sbjct: 175 TADSATRQDILQQLNLQQ--PYVHLGSFDRPNIRYTVQEKFRPTEQLISY 222
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 115/201 (57%), Gaps = 10/201 (4%)
Query: 498 KPAERL-SMLQEPLEDGLT-IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH 555
+P E+L S LQ+ +DG + I+Y +R++ + + L G AAAY+A L + +V
Sbjct: 214 RPTEQLISYLQQ--QDGASGIVYCSSRRKVDELTEQLKQRGFNAAAYHAGLSSDERNQVQ 271
Query: 556 TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
F + +++VAT+AFGMG++K N+R ++H+ P+++EAYYQE GRAGRDG A+ +L
Sbjct: 272 DAFKRDDYQLIVATVAFGMGVNKSNIRFVVHFELPRTIEAYYQETGRAGRDGVPAEAMLL 331
Query: 616 ---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC 672
A++ M L + ++ + + ++ + CR ++L+ YFGE +C
Sbjct: 332 FDPADIGRMKRWLDNEENQQRAEVTWQRFLAMAAFA-EAQTCRRQVLLNYFGEA-RQTRC 389
Query: 673 QLCDVCVDGPPEMKNLKEEAN 693
CD+C+ PP+ N E A
Sbjct: 390 GNCDICLQ-PPQQFNATELAQ 409
>gi|428213965|ref|YP_007087109.1| ATP-dependent DNA helicase RecQ [Oscillatoria acuminata PCC 6304]
gi|428002346|gb|AFY83189.1| ATP-dependent DNA helicase RecQ [Oscillatoria acuminata PCC 6304]
Length = 836
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 143/244 (58%), Gaps = 22/244 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK FGH S + Q+E + A L + D L++ TG GKSLCFQ+PALL + VV+SPLI+
Sbjct: 19 LKHFFGHDSFRPGQREIVEAALQNRDLLIVMPTGGGKSLCFQLPALLRKGITVVVSPLIA 78
Query: 225 LMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L +G+ FL S + E L+G ++YV PE ++ R + +
Sbjct: 79 LMQDQVESLKNNGIACTFLNSTLSWEESRSRETAILQGEIKLLYVAPERLLSERFLPFMD 138
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ GI+ FAIDE HCVS+WGHDFRP+YR++ +LR+ + +IP+MALTAT
Sbjct: 139 LVRAQVGISGFAIDEAHCVSEWGHDFRPEYRQMQLLRQRYP---------EIPMMALTAT 189
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKK 399
AT +VR+DI + L + + K + SF RPNL + V+ K+ + +L+ + +
Sbjct: 190 ATDRVRQDITQQLAL-RDPKIHIASFNRPNLYYEVRQKN-------KQSYRELVKLIRES 241
Query: 400 KKTG 403
K +G
Sbjct: 242 KGSG 245
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 95/169 (56%), Gaps = 5/169 (2%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G IIY +R+ +A L G+ A Y+A + + T F + +V+VATIAF
Sbjct: 243 GSGIIYCLSRRRVDEVAYKLQREGIDAIPYHAGMNDQERSSNQTRFIRDDAQVIVATIAF 302
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRR 629
GMGI+K +VR ++HY P+++E YYQE+GRAGRDG A+C + Y ++ ++ ++ +
Sbjct: 303 GMGINKPDVRFVVHYDLPRNIEGYYQESGRAGRDGEPANCTMFFGYGDIKTIEYIIDQKT 362
Query: 630 SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVC 678
D+ + A + L Y +T CR I + YFGE F C+ CD C
Sbjct: 363 DVDEQRIARQQLRQIINYSEST-VCRRTIQLGYFGERFPG-NCENCDNC 409
>gi|218245896|ref|YP_002371267.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8801]
gi|218166374|gb|ACK65111.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8801]
Length = 709
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 140/234 (59%), Gaps = 21/234 (8%)
Query: 162 NSL---LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
NSL LK FG+ S + Q + + L + D LV+ TG GKSLCFQ+PALL + VV
Sbjct: 5 NSLEQSLKYFFGYDSFRPGQAKIIQEALQNRDLLVIMPTGGGKSLCFQLPALLKPGLTVV 64
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--R 273
+SPLI+LM DQ L +G+ A FL S +V EQ ++G ++YV PE ++ +
Sbjct: 65 VSPLIALMQDQVDTLLDNGIGATFLNSSLKSEEVRSREQAIIKGKIKLLYVAPERLLNDK 124
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
L LAE G++ FAIDE HCVS+WGHDFRP+YR+L LR+ + +P+
Sbjct: 125 FTPFLDFLAEKIGVSFFAIDEAHCVSEWGHDFRPEYRQLKQLRQRYP---------QVPM 175
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKK 387
+ALTATAT +VREDI+ L + K +TSF RPNL + V+ + R SY K
Sbjct: 176 LALTATATKRVREDIIHQLAL-KQPGIHITSFNRPNLDYDVQFKE---RRSYNK 225
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 115/217 (52%), Gaps = 7/217 (3%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+ G I+Y +R+ IA L G+KA Y+A + F + ++V+VATI
Sbjct: 233 QKGSGIVYCLSRRSVDDIAFRLQNDGIKALPYHAGMADEARALNQNRFIRDDVQVMVATI 292
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPS 627
AFGMGI+K +VR +IHY P++LE YYQE+GRAGRDG A+C L+ +LS + L+
Sbjct: 293 AFGMGINKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAECTLFFSLSDLKKIEYLIDQ 352
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKN 687
+ + + K A + L Y T CR I++ YFGE F+ C CD C D P +++
Sbjct: 353 KSTPQEQKIARQQLRQVVDYAEGTE-CRRTIVLRYFGERFAG-NCGKCDNCRD-PKPLED 409
Query: 688 LKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKF 724
EA + +A E+ D + G KK+K
Sbjct: 410 WTIEAQKFLSCVARCRERFGMTHIID-VLRGSKKRKI 445
>gi|359478480|ref|XP_002275696.2| PREDICTED: Werner syndrome ATP-dependent helicase-like [Vitis
vinifera]
Length = 913
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 130/215 (60%), Gaps = 10/215 (4%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ S LK++FG+S + +QK+ + L D LV+ ATGSGKSLC+Q+P L+ GK +VIS
Sbjct: 1 MESTLKRYFGYSGFRPYQKDIIQKILERRDSLVIMATGSGKSLCYQLPPLILGKTAIVIS 60
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
PLISLM DQ L + G+ A FL S Q D V + A G + ++++ PE +
Sbjct: 61 PLISLMQDQVMALKQRGIRAEFLASAQTDPTVHKNAESGTFHVLFMTPEKACSIPGSFWS 120
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
GI LFA+DE HC+S+WGHDFR +Y++L + L+++ D+P + LTATA
Sbjct: 121 KLLKVGICLFAVDEAHCISEWGHDFRMEYKQL---------DKLRAILLDVPFVGLTATA 171
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
T +VR DI+ SL M F+ SF R NL + VK
Sbjct: 172 TKKVRMDIINSLKMRDPNVFI-GSFDRKNLFYGVK 205
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 131/257 (50%), Gaps = 15/257 (5%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
TIIY T K+ I K L G+KA Y+ + S H F +++ V+VATIAFGM
Sbjct: 231 TIIYCTTIKDVEQIYKSLQEAGIKAGIYHGQMANSAREESHRIFIRDEVHVMVATIAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM--PTLLPSRRSED 632
GIDK N+R +IHYG P+SLE+YYQE+GR GRDG + C LY N + +
Sbjct: 291 GIDKPNIRHVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYNRGDFMKADFYCGEATGN 350
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
Q + L Y + T+ CR K L+EYFGE F +KC CD C E ++ EA
Sbjct: 351 QRRAIMDSLVAAQNYCLQTT-CRRKFLLEYFGEKFESDKCGNCDNCTISKREC-DMSREA 408
Query: 693 NILMQVI-AAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLL 750
+L+ I + +M D I G + ++ +D K+ + + ++ S
Sbjct: 409 FLLIACINSCRGHWGLNMPID--ILRGSRSKRILDAKFDKLPLHGLGKDHSSN------- 459
Query: 751 WWRGLARIMENKGYIRE 767
WW+ LA + + GY+ E
Sbjct: 460 WWKALAYQLISYGYLME 476
>gi|428210292|ref|YP_007094645.1| ATP-dependent DNA helicase RecQ [Chroococcidiopsis thermalis PCC
7203]
gi|428012213|gb|AFY90776.1| ATP-dependent DNA helicase RecQ [Chroococcidiopsis thermalis PCC
7203]
Length = 708
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 149/248 (60%), Gaps = 22/248 (8%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ + LK +FG+ S + QK+ + L + D L++ TG GKSLCFQ+PALL + VV+S
Sbjct: 7 LEAALKHYFGYDSFRPGQKQIVEQALQNRDQLIVMPTGGGKSLCFQLPALLQPGLTVVVS 66
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLI 275
PLI+LM DQ L +G+ A FL S ++V EQ L G ++YV PE ++ + +
Sbjct: 67 PLIALMQDQVEALRDNGIGATFLNSSLNLHQVRSREQAILSGKTKLLYVAPERLLNEKFL 126
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L + E GIA FAIDE HCVS+WGHDFRP+YR+L LR+ + +P +A
Sbjct: 127 PFLDLIREKIGIAAFAIDEAHCVSEWGHDFRPEYRQLKQLRQRYPG---------VPTLA 177
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDI 395
LTATAT +VR+DI++ L +S+ + + SF RPNL + V+ + K+ + QL+ I
Sbjct: 178 LTATATDRVRQDIIQQLGLSQPSIHI-ASFNRPNLYYEVQPKQ-------KQSYSQLLQI 229
Query: 396 YTKKKKTG 403
+ + +G
Sbjct: 230 IRQSEGSG 237
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 131/262 (50%), Gaps = 13/262 (4%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G I+Y +R++ IA L + A Y+A L ++ T F + + V+VATIA
Sbjct: 234 EGSGIVYCLSRRKVDEIAFKLQQDKIAALPYHAGLSDTERAENQTRFIRDDVRVMVATIA 293
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSR 628
FGMGI+K +VR +IH+ P+++E YYQE+GRAGRDG A C L Y ++ ++ L+ +
Sbjct: 294 FGMGINKPDVRFVIHHDLPRNIEGYYQESGRAGRDGETARCTLFLGYGDIKTIEYLIDQK 353
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
+ A + L + T CR I++ YFGE F+ + C CD C+ P + +
Sbjct: 354 TDLQGQRIARQQLRQVIDFAEGTD-CRRTIVLGYFGERFAGQ-CSGCDNCL-APKPVVDW 410
Query: 689 KEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATD 748
EA + +A E+ M+ I G K QK + + K+ I +
Sbjct: 411 TIEAMKFLSCVARCKEKFG-MNHIIDILRGSKNQKVLQYNHNKLSTYGIGKDK------T 463
Query: 749 LLWWRGLARIMENKGYIREGDD 770
+ WR L R + ++G + + D
Sbjct: 464 VEEWRLLGRSLLHQGLLDQTTD 485
>gi|414888136|tpg|DAA64150.1| TPA: hypothetical protein ZEAMMB73_018829 [Zea mays]
Length = 898
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 137/215 (63%), Gaps = 10/215 (4%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ + LK +FG+S+ + +Q+E + L DCLV+ ATGSGKS+C+QIP L+T K VV+S
Sbjct: 1 MEAALKGYFGYSTFRPYQREIIQKVLDGRDCLVVMATGSGKSICYQIPPLVTKKTAVVVS 60
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
PL+SLM DQ L + GV + +LGS Q ++ V +A +G + ++Y+ PE I L
Sbjct: 61 PLLSLMQDQVMSLKQKGVKSEYLGSTQTNSSVSNEAEKGTFDVLYMTPEKAISLPSRFWS 120
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
++ GI L A+DE HC+S+WGHDFR +Y++L ++L++L +P +ALTATA
Sbjct: 121 NLQASGICLLAVDEAHCISEWGHDFRTEYKQL---------HSLRNLLVGVPFVALTATA 171
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
T +VR+DI SL + V+ SF R NL + VK
Sbjct: 172 TERVRQDISTSLVLCS-PHVVVGSFDRHNLFYGVK 205
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
TIIY T ++T + + L G+K Y+ + H F +++ V+VATIAFGM
Sbjct: 231 TIIYCTTIRDTEQVHEALVTSGIKTGIYHGQMGSRAREESHRSFIRDEVLVMVATIAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSE 631
GIDK +VR +IHYG P+SLE+YYQE+GR GRDG + C LY ++++ ++E
Sbjct: 291 GIDKPDVRCVIHYGCPKSLESYYQESGRCGRDGLPSICWLYYQRSDITKADFYCSEAKNE 350
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEE 691
Q K +Y + + CR + L++YFGE+++ + C CD C E ++L +E
Sbjct: 351 TQRKAIMDSFMAAQKYCL-LATCRRRFLLQYFGEEWNID-CGNCDNCTAVKNE-RDLSKE 407
Query: 692 ANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLW 751
+L+ I + + ++ + G + +K +D K+ ++ + + Y + W
Sbjct: 408 VFLLLSCIKSCGGRWG-LNLPIDVLRGSRAKKIVDNNYDKL---QMHGRGKDYSSN---W 460
Query: 752 WRGLARIMENKGYIRE 767
W+ L ++ Y++E
Sbjct: 461 WKALGGLLIAHDYLKE 476
>gi|334121014|ref|ZP_08495090.1| ATP-dependent DNA helicase RecQ [Microcoleus vaginatus FGP-2]
gi|333455733|gb|EGK84376.1| ATP-dependent DNA helicase RecQ [Microcoleus vaginatus FGP-2]
Length = 731
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 140/244 (57%), Gaps = 22/244 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK FG+ S + Q+E + A L D +++ TG GKSLCFQ+PALL + VV+SPLI+
Sbjct: 19 LKHFFGYDSFRPGQQEIVEAALQKRDMMIVMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 78
Query: 225 LMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L +G+ A FL S Q E L G ++YV PE ++ R + L
Sbjct: 79 LMQDQVEALQDNGIGATFLNSTLSSQETRSRETAILEGKIKLLYVAPERLLGERFLPFLD 138
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+A GI+ FAIDE HCVS+WGHDFRP+YR++ +R+ + DIP+M LTAT
Sbjct: 139 IVANKLGISAFAIDEAHCVSEWGHDFRPEYRQMQRVRDRYP---------DIPIMGLTAT 189
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKK 399
AT +VR+DI++ L + + + SF RPNL + V R K F +++ I KK
Sbjct: 190 ATERVRQDIIQQLTL-RNPYIHVASFNRPNLYYEV-------RPKTKHSFAEVLQIIKKK 241
Query: 400 KKTG 403
+G
Sbjct: 242 GGSG 245
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 142/275 (51%), Gaps = 17/275 (6%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
AE L ++++ + G IIY +RK+ +A L G++A Y+A + T F
Sbjct: 232 AEVLQIIKK--KGGSGIIYCLSRKKVDEVAYKLQQSGIQALPYHAGMNDVDRATNQTRFI 289
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YA 616
+ ++V+VATIAFGMGI+K +VR +IHY P++LE YYQE+GRAGRD A C L Y
Sbjct: 290 RDDVQVMVATIAFGMGINKPDVRFVIHYDLPKNLEGYYQESGRAGRDNEPAHCSLFFGYG 349
Query: 617 NLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCD 676
++ + ++ + + + A + L Y +T CR I + YFG+ F C CD
Sbjct: 350 DVKMIDYIIEQKPDPQEQRIARQQLRRVINYAESTD-CRRTIQLSYFGDSFPG-NCGTCD 407
Query: 677 VCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSK 736
C + P +++ EA + +A E+ M+ + G K QK + + ++
Sbjct: 408 NCCNQKP-VEDWTIEAMKFLSCVARCQEKF-GMNHIIDVLRGSKNQKILQYQHHQLSTYG 465
Query: 737 I-REQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
I +++S + W+ L+R + N+G++ E D
Sbjct: 466 IGKDRSAEE-------WKKLSRSLLNQGFLDEKTD 493
>gi|425444700|ref|ZP_18824746.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9443]
gi|425454418|ref|ZP_18834158.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9807]
gi|389735511|emb|CCI01005.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9443]
gi|389804921|emb|CCI15689.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9807]
Length = 703
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 148/251 (58%), Gaps = 28/251 (11%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ +LK HFG+ + Q++ + A L + D LV+ TG GKSLCFQ+PAL+ V VV+S
Sbjct: 7 LEKVLKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVS 66
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ + L+ +G+ A FL S +V ++ L+G ++YV PE RL+ P
Sbjct: 67 PLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPE---RLLSP 123
Query: 278 -----LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
L + G+A A+DE HCVS WGHDFRP+YR++ +R+ F + +P
Sbjct: 124 SFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPS---------VP 174
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQL 392
++ALTATAT QVREDI++ L + + T + SF RPNL + V+ KTS K + QL
Sbjct: 175 ILALTATATQQVREDIIQQLGL-RDTSIHIASFNRPNLYYEVQ-PKTS------KSYQQL 226
Query: 393 IDIYTKKKKTG 403
+K +G
Sbjct: 227 YQYIKGQKGSG 237
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 5/174 (2%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+ G I+Y +RK +A+ L G+ A Y+A + + T F + ++++VATI
Sbjct: 233 QKGSGIVYCISRKTVDKVAEQLQKDGIDALPYHAGMDDRERSENQTRFIRDDVQIMVATI 292
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPS 627
AFGMGI+K +VR ++HY P++LE YYQE+GRAGRDG A C L +A+ + +
Sbjct: 293 AFGMGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQ 352
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
+ +++ ++A + L Y T C R+ +L YFGE FS C CD C +G
Sbjct: 353 KTEQNEQQKARQQLRQVLDYAEGTECRRSSVL-GYFGESFSG-NCGNCDNCRNG 404
>gi|392373492|ref|YP_003205325.1| ATP-dependent DNA helicase RecQ [Candidatus Methylomirabilis
oxyfera]
gi|258591185|emb|CBE67480.1| ATP-dependent DNA helicase RecQ [Candidatus Methylomirabilis
oxyfera]
Length = 622
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 132/218 (60%), Gaps = 15/218 (6%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ +K+ +G+ +L Q+EA+ A LA D +V+ TG GKSLC+Q PA GK+ VV+S
Sbjct: 4 IRHTVKRVWGYDALLPLQEEAIGAVLARRDSIVILPTGGGKSLCYQAPAAAMGKLAVVVS 63
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ L+ GV A FL S N+ VE G Y ++YV PE ++ P
Sbjct: 64 PLIALMKDQVDGLTTAGVPAAFLNSSLTPNERRLVEGNVANGRYHLLYVAPERLV--FPP 121
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
RL + G+A FAIDE HC+S+WGHDFRP+YR+L V+RE F D+ + A T
Sbjct: 122 CLRLLKQAGVAFFAIDEAHCISQWGHDFRPEYRQLKVVREAFP---------DVAIHAFT 172
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
ATAT +VR DI L + + + ++ SF RPNL + V+
Sbjct: 173 ATATPRVRADIATELALRE-PEILVGSFDRPNLVYRVR 209
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 119/238 (50%), Gaps = 25/238 (10%)
Query: 489 SFERTDLL---NKPAERLSMLQEPLE---DGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R +L+ + +RL + E LE IIY R E + L G +A AY
Sbjct: 198 SFDRPNLVYRVRRRTDRLQQVTEALERHRGTAGIIYCIRRAEVDQLTDALRRRGYRAVAY 257
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L ++ RR +F + +VVVAT+AFGMGID+ +VR +IH G P+S+E Y QEAGR
Sbjct: 258 HAGLADAERRRTQDDFIAERADVVVATVAFGMGIDRSDVRYVIHAGMPKSIEHYQQEAGR 317
Query: 603 AGRDGHLADCVLYANLSS--------MPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCC 654
AGRDG ++C+L + M LP+ A LS+ + Y + C
Sbjct: 318 AGRDGLPSECLLLYSGGDFGLWRSILMAEGLPA-------PGALPKLSEMYNY-CQGAAC 369
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDD 712
R + LV YFG+ + + C CD+C+ E+ A + Q++A E D
Sbjct: 370 RHRFLVNYFGQAYRTDTCGACDICLG---EVAVEDGSATLARQILACVTEMGERFGAD 424
>gi|300868275|ref|ZP_07112904.1| ATP-dependent DNA helicase [Oscillatoria sp. PCC 6506]
gi|300333710|emb|CBN58088.1| ATP-dependent DNA helicase [Oscillatoria sp. PCC 6506]
Length = 726
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/244 (42%), Positives = 141/244 (57%), Gaps = 22/244 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK FG+ S + Q+E + A L+ D L++ TG GKSLCFQ+PALL + VV+SPLI+
Sbjct: 19 LKHFFGYDSFRPGQREIVEAALSKRDMLIVMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 78
Query: 225 LMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L +G+ A FL S E L G ++YV PE ++ R + L
Sbjct: 79 LMQDQVESLRDNGIGATFLNSTLSLMETRSRETAILDGKIKLLYVAPERLLSERFLPFLD 138
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
++A S GI+ FAIDE HCVS+WGHDFRPDYR++ +R+ + IP+MALTAT
Sbjct: 139 QVAASLGISAFAIDEAHCVSEWGHDFRPDYRQILQVRDRYP---------HIPIMALTAT 189
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKK 399
AT +VR DI++ L + + V SF RPNL + V RA K F +L+ I K
Sbjct: 190 ATDRVRLDIMQQLALREPYIHV-ASFNRPNLYYEV-------RAKTKHSFAELLQIIDKN 241
Query: 400 KKTG 403
+G
Sbjct: 242 GGSG 245
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 133/262 (50%), Gaps = 15/262 (5%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G IIY +RK +A L G+ A Y+A L S T F + ++++VAT+AF
Sbjct: 243 GSGIIYCLSRKNVDELAYKLQQVGISALPYHAGLNDSDRTSNQTRFIRDDVQIMVATVAF 302
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRR 629
GMGI+K +VR ++HY P++LE YYQE+GRAGRDG A C+L Y + ++ L+ +
Sbjct: 303 GMGINKPDVRFVVHYNLPRNLEGYYQESGRAGRDGEPAQCILFLGYGDRKTIEYLIEQKP 362
Query: 630 SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLK 689
+ + A + Y S CR I + YFGE F C CD C + P +++
Sbjct: 363 DPQEQRIATQQFRRVIDYA-EASDCRRTIQLSYFGEAFPG-NCSQCDNCRNQKP-LEDWT 419
Query: 690 EEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATD 748
EA + +A E+ M+ + G K QK + + K+ I +E+S A D
Sbjct: 420 IEAMKFLSGVARCKERFG-MNHIIEVLRGSKSQKVLQYGHDKLSTYGIGKEKS----AED 474
Query: 749 LLWWRGLARIMENKGYIREGDD 770
W+ LAR + ++G + E D
Sbjct: 475 ---WKMLARSLLHQGLLDETTD 493
>gi|257058944|ref|YP_003136832.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8802]
gi|256589110|gb|ACU99996.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8802]
Length = 709
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/234 (43%), Positives = 140/234 (59%), Gaps = 21/234 (8%)
Query: 162 NSL---LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
NSL LK FG+ S + Q + + L + D LV+ TG GKSLCFQ+PALL + VV
Sbjct: 5 NSLEQSLKYFFGYDSFRPGQAKIIQEALQNRDLLVIMPTGGGKSLCFQLPALLKPGLTVV 64
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--R 273
+SPLI+LM DQ L +G+ A FL S +V EQ ++G ++YV PE ++ +
Sbjct: 65 VSPLIALMQDQVDTLLDNGIGATFLNSSLKSEEVRSREQAIIKGKIKLLYVAPERLLNDK 124
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
L +AE G++ FAIDE HCVS+WGHDFRP+YR+L LR+ + +P+
Sbjct: 125 FTPFLDFIAEKIGVSFFAIDEAHCVSEWGHDFRPEYRQLKQLRQRYP---------QVPM 175
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKK 387
+ALTATAT +VREDI+ L + K +TSF RPNL + V+ + R SY K
Sbjct: 176 LALTATATKRVREDIIHQLEL-KQPGIHITSFNRPNLDYDVQFKE---RRSYNK 225
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 115/217 (52%), Gaps = 7/217 (3%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+ G I+Y +R+ IA L G+KA Y+A + F + ++V+VATI
Sbjct: 233 QKGSGIVYCLSRRSVDDIAFRLQNDGIKALPYHAGMADEARALNQNRFIRDDVQVMVATI 292
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPS 627
AFGMGI+K +VR +IHY P++LE YYQE+GRAGRDG A+C L+ +LS + L+
Sbjct: 293 AFGMGINKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAECTLFFSLSDLKKIEYLIDQ 352
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKN 687
+ + + K A + L Y T CR I++ YFGE F+ C CD C D P +++
Sbjct: 353 KSTPQEQKIARQQLRQVVDYAEGTE-CRRTIVLRYFGERFAG-NCGKCDNCRD-PKPLED 409
Query: 688 LKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKF 724
EA + +A E+ D + G KK+K
Sbjct: 410 WTIEAQKFLSCVARCRERFGMTHIID-VLRGSKKRKI 445
>gi|443668675|ref|ZP_21134223.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa DIANCHI905]
gi|159029588|emb|CAO90247.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330750|gb|ELS45444.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa DIANCHI905]
Length = 701
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 144/251 (57%), Gaps = 28/251 (11%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ +LK HFG+ + Q++ + A L + D LV+ TG GKSLCFQ+PAL+ V VV+S
Sbjct: 7 LEKVLKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVS 66
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ + L+ +G+ A FL S +V E L+G ++YV PE RL+ P
Sbjct: 67 PLIALMQDQVTALADNGIGATFLNSTLNAKQVRDRESLILQGKIKLLYVAPE---RLLSP 123
Query: 278 -----LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
L + G+A A+DE HCVS WGHDFRP+YR++ +R+ F + +P
Sbjct: 124 SFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPS---------VP 174
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQL 392
++ALTATAT QVREDI++ L + + + SF RPNL + V RA K + QL
Sbjct: 175 ILALTATATQQVREDIIQQLGLRDASIHI-ASFNRPNLYYEV-------RAKTSKSYQQL 226
Query: 393 IDIYTKKKKTG 403
KK +G
Sbjct: 227 YQYIKGKKGSG 237
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 99/172 (57%), Gaps = 5/172 (2%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G I+Y +RK +A++L G+ A Y+A + + T F + ++++VATIAF
Sbjct: 235 GSGIVYCISRKTVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAF 294
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRR 629
GMGI+K +VR ++HY P++LE YYQE+GRAGRDG A C L +A+ + + +
Sbjct: 295 GMGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKT 354
Query: 630 SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
+++ ++A + L Y T C R+ +L YFGE F+ C CD C +G
Sbjct: 355 EQNEQQKARQQLRQVLDYAEGTECRRSSVL-GYFGESFAG-NCGNCDNCRNG 404
>gi|345486372|ref|XP_001605988.2| PREDICTED: Bloom syndrome protein homolog [Nasonia vitripennis]
Length = 1211
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 136/225 (60%), Gaps = 20/225 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + Q A++A + HDC VL TG GKSLC+Q+PALL V +VISPL
Sbjct: 518 VFKTRFGLHQFRPNQLPAINAVILGHDCFVLMPTGGGKSLCYQLPALLAPGVTIVISPLR 577
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS------IIYVCPETVIRLIK- 276
SL+ DQ KL ++A +L +G N+ R +Y+ ++YV PE + + K
Sbjct: 578 SLIVDQTQKLLSLDISALYL-TGDLSNEQMNGVYRKLYNTESNLKLLYVTPEKISKSTKF 636
Query: 277 --PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
L RL +A F IDEVHCVS+WGHDFRPDY++LS+LRE F +P++
Sbjct: 637 CDSLLRLYRDGKLARFVIDEVHCVSQWGHDFRPDYKKLSMLRERFPG---------VPII 687
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT 379
ALTATAT +VR DIL LH+ + K+ ++SF RPNLR++V K+
Sbjct: 688 ALTATATQRVRSDILHQLHL-QSPKWFISSFNRPNLRYTVTLRKS 731
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 106/189 (56%), Gaps = 14/189 (7%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L +++ + IIY +R + ++A+ L G++A +Y+A L ++ K
Sbjct: 739 LDLIKTKFPNDCGIIYCFSRNDCDNLAEALKKEGIQALSYHAGLDDKVRTDRQIQWVSEK 798
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622
++V+ ATIAFGMGIDK NVR +IH P+S+E YYQE+GRAGRDG ADC+L N S M
Sbjct: 799 VKVICATIAFGMGIDKPNVRYVIHATMPKSIEGYYQESGRAGRDGEPADCILLYNYSDMH 858
Query: 623 ---TLLPSRRSEDQTKQAYRM-LSDCFR---YGMNTSCCRAKILVEYFGEDFSHEKC--- 672
T++ S +E K+A + L + F+ + N + CR + + YFGE F + C
Sbjct: 859 RYRTMMES--NEYANKEALKTHLDNLFKIVHFCENMADCRRALQLNYFGEMFDRQLCIAN 916
Query: 673 --QLCDVCV 679
CD C+
Sbjct: 917 METTCDNCL 925
>gi|37522198|ref|NP_925575.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421]
gi|35213198|dbj|BAC90570.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421]
Length = 746
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 139/228 (60%), Gaps = 18/228 (7%)
Query: 155 SDWEV---KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL 211
++W V K+ LK+HFGH + Q+ + +A HD L+L TG GKSL +Q+PALL
Sbjct: 9 AEWTVDDQKLGEALKRHFGHERFRPGQRRIVELAIAGHDQLILMPTGGGKSLTYQLPALL 68
Query: 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCP 268
+ VV+SPLI+LMHDQ +L ++G+ A FL S + EQ +G ++Y+ P
Sbjct: 69 LPGLTVVVSPLIALMHDQVDRLRENGIAATFLNSTLAAGERTRREQAIAQGRMKLLYLSP 128
Query: 269 ETVI--RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
E ++ + L+ + G++L A+DE HCVS+WGHDFRP+YR+L+ +RE F A
Sbjct: 129 ERLLSEECLAFLEYVQRQGGLSLLAVDEAHCVSEWGHDFRPEYRQLAAVRERFAA----- 183
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P +ALTATAT +VR+DIL L + + + SF RPNL ++V
Sbjct: 184 ----LPTLALTATATERVRQDILVQLKL-RDPHIHIASFDRPNLHYAV 226
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 135/281 (48%), Gaps = 27/281 (9%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
AE L L+ L+ I+Y +R+ ++A+ L G+ A Y+A + R T+F
Sbjct: 235 AELLGRLRR-LDGASAIVYCQSRRAVEALAERLVADGLNALPYHAGMAAEMRSRHQTQFL 293
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---A 616
+ V+VAT+AFGMGI K +VR + HY P++LE YYQE+GRAGRDG ADCVL+
Sbjct: 294 RDDAPVLVATVAFGMGIAKPDVRAVFHYELPRNLEGYYQESGRAGRDGQPADCVLFFSPG 353
Query: 617 NLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCD 676
+ + + L+ + + + A L+ Y +T CR +IL+ YFGE + C CD
Sbjct: 354 DRAKIEYLVAQKSDPHEQRLARSQLAQMLAYAEST-VCRRRILLGYFGEALAEADCGGCD 412
Query: 677 VCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSK 736
C P ++ +A L+ +A E+ + + G Q K
Sbjct: 413 NC-RSPVATQDRTVDAQKLLSCVARCQERFG-LRHIAQVLRGANTQ-------------K 457
Query: 737 IREQSQKYLAT-----DL--LWWRGLARIMENKGYIREGDD 770
IR Q L+T DL W L R + ++G + E D
Sbjct: 458 IRTQGHDRLSTYGIGADLSQAEWLHLGRTLVHQGLLIETTD 498
>gi|254443570|ref|ZP_05057046.1| ATP-dependent DNA helicase RecQ [Verrucomicrobiae bacterium DG1235]
gi|198257878|gb|EDY82186.1| ATP-dependent DNA helicase RecQ [Verrucomicrobiae bacterium DG1235]
Length = 616
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/230 (42%), Positives = 139/230 (60%), Gaps = 15/230 (6%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+V++ LKK+FGH + + Q E ++ LA D L TG GKSLC+Q+PA+L+ + VVI
Sbjct: 8 RVHAALKKYFGHDTFRPLQAEIVADALAGRDVFALLPTGGGKSLCYQLPAVLSEGLTVVI 67
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ---KALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ L+++G+ A FL S Q K G Y ++YV PE ++ L
Sbjct: 68 SPLIALMKDQVDGLTENGIAATFLNSSLGKKDAAQRYAKLFAGDYQVLYVAPERLM-LGG 126
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L+ L + + + FA+DE HC+S+WGHDFRP+YR+L+ LR+ F D P MAL
Sbjct: 127 FLEDLKKWK-VCRFAVDEAHCISEWGHDFRPEYRQLAELRKRFP---------DTPFMAL 176
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYK 386
TATAT +VR DI+K L + T +V SF RPNL + ++ + R K
Sbjct: 177 TATATDRVRGDIVKQLQLHDPTDYV-ASFNRPNLAYRIEQKQAVFRQILK 225
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 110/208 (52%), Gaps = 13/208 (6%)
Query: 481 HRDRDTDRSFERTDLLNKPAERLSMLQE--------PLEDGLTIIYVPTRKETLSIAKYL 532
H D SF R +L + ++ ++ ++ P E G IIY +RK T A L
Sbjct: 195 HDPTDYVASFNRPNLAYRIEQKQAVFRQILKFVKSRPFESG--IIYCFSRKATEQTADRL 252
Query: 533 CGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQS 592
GV+A AY+A + Q + F ++++VV ATIAFGMGIDK NVR +IH P++
Sbjct: 253 RQEGVEAIAYHAGMTPLQRAKNQDAFIRDEVKVVCATIAFGMGIDKPNVRYVIHQDIPKN 312
Query: 593 LEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLP--SRRSEDQTKQAYRMLSDCFRYGMN 650
+E YYQE GRAGRDG ++CV+Y + + L + + + + A L Y +
Sbjct: 313 IEGYYQETGRAGRDGLPSECVMYFSPGDVAKQLNFIAEKEPQEREVAKEQLRQIVNYAES 372
Query: 651 TSCCRAKILVEYFGEDFSHEKCQLCDVC 678
+ C RA +L++YF E + C CD C
Sbjct: 373 SRCRRA-VLLDYFSETWKEGNCGNCDNC 399
>gi|425441134|ref|ZP_18821420.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9717]
gi|389718248|emb|CCH97777.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9717]
Length = 703
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/229 (41%), Positives = 139/229 (60%), Gaps = 21/229 (9%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ +LK HFG+ + Q++ + A L + D LV+ TG GKSLCFQ+PAL+ V VV+S
Sbjct: 7 LEKVLKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVS 66
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ + L+ +G+ A FL S +V ++ L+G ++YV PE RL+ P
Sbjct: 67 PLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPE---RLLSP 123
Query: 278 -----LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
L + G+A A+DE HCVS WGHDFRP+YR++ +R+ F + +P
Sbjct: 124 SFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPS---------VP 174
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
++ALTATAT QVREDI++ L + + T + SF RPNL + V+ + S
Sbjct: 175 ILALTATATQQVREDIIQQLGL-RDTSIHIASFNRPNLYYEVQPKTSKS 222
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 98/174 (56%), Gaps = 5/174 (2%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+ G I+Y +RK +A+ L G+ A Y+A + + T F + ++++VATI
Sbjct: 233 QKGAGIVYCISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATI 292
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPS 627
AFGMGI+K +VR +IHY P++LE YYQE+GRAGRDG A C L +A+ + +
Sbjct: 293 AFGMGINKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQ 352
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
+ +++ ++A + L Y C R+ +L YFGE F+ C CD C +G
Sbjct: 353 KTEQNEQQKARQQLRQVLDYAEGNECRRSSVL-GYFGESFAG-NCGNCDNCRNG 404
>gi|157104176|ref|XP_001648286.1| blooms syndrome DNA helicase [Aedes aegypti]
gi|108880401|gb|EAT44626.1| AAEL004039-PA [Aedes aegypti]
Length = 1406
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 131/221 (59%), Gaps = 19/221 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
L + FG S + Q + ++A L +DC VL TG GKSLC+Q+PALLT V +V+SPL
Sbjct: 664 LFRTKFGLQSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPALLTNGVTIVVSPLK 723
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK------ALRGMYSIIYVCPETVI---RL 274
SL+ DQ +KLS + A L SG EQ+ + R ++YV PE + R
Sbjct: 724 SLILDQVNKLSSLDIEAAHL-SGNISYAEEQRIYYDLQSPRPKMKLLYVTPEKISSSGRF 782
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
L L + +A F IDE HCVS WGHDFRPDY++LSVLRE F + IP+M
Sbjct: 783 QNVLSGLHAMKQLARFVIDEAHCVSAWGHDFRPDYKKLSVLREQFPS---------IPIM 833
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
ALTATA +VR D++K L + TK+ L SF RPNL++ V+
Sbjct: 834 ALTATANPRVRVDVIKQLRLKSDTKWFLCSFNRPNLKYIVR 874
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 110/216 (50%), Gaps = 31/216 (14%)
Query: 489 SFERTDL--LNKPAERLSMLQE---------PLEDGLTIIYVPTRKETLSIAKYLCGFGV 537
SF R +L + +P + ++ QE P G I+Y +K+ +A + G+
Sbjct: 863 SFNRPNLKYIVRPKQGVATKQEIIDLIKKKYPRASG--IVYCLAKKDCDQLAAEMKSAGI 920
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
A +Y+A L SQ ++ +K +VV ATIAFGMGIDK +VR +IH+ P+S+E YY
Sbjct: 921 SAKSYHAGLSDSQRESTQKDWIADKTKVVCATIAFGMGIDKPDVRYVIHHSIPKSIEGYY 980
Query: 598 QEAGRAGRDGHLADCVLYANLSSM---------PTLLPSRRSEDQTKQAYRMLSDCFRYG 648
QEAGRAGRDG + C+LY N S M + +P + +RM+ C
Sbjct: 981 QEAGRAGRDGDFSTCILYYNYSDMLRFRKMMDFDSSIPFEAKKVHVNNLFRMVDYC---- 1036
Query: 649 MNTSCCRAKILVEYFGEDFSHEKC-----QLCDVCV 679
N + CR + YF E F+ E+C CD C+
Sbjct: 1037 ENVTDCRRSQQLNYFAEHFTREQCLENRATACDNCL 1072
>gi|170042287|ref|XP_001848863.1| ATP-dependent DNA helicase hus2 [Culex quinquefasciatus]
gi|167865792|gb|EDS29175.1| ATP-dependent DNA helicase hus2 [Culex quinquefasciatus]
Length = 1437
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 132/221 (59%), Gaps = 19/221 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ ++ FG S + Q + ++A L HDC VL TG GKSLC+Q+PA++T V +V+SPL
Sbjct: 687 VFRETFGLRSFRPNQLQVINATLLGHDCFVLMPTGGGKSLCYQLPAIMTEGVTIVVSPLK 746
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS------IIYVCPETVI---RL 274
SL+HDQ +KL + A L SG+ +QK + S ++YV PE + R
Sbjct: 747 SLIHDQVNKLGSLDIPAAHL-SGEVSYADQQKIYADLSSPKPVLKLLYVTPEKISSSGRF 805
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
L L + + F IDE HCVS WGHDFRPDY++LSVLRE F IP+M
Sbjct: 806 QNILTELYRMKQLGRFVIDEAHCVSAWGHDFRPDYKKLSVLREQFPT---------IPVM 856
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
ALTATA +VR D+LK L + + TK+ L SF RPNL++ ++
Sbjct: 857 ALTATANPRVRIDVLKQLGLGRNTKWFLCSFNRPNLKYIIR 897
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 111/195 (56%), Gaps = 20/195 (10%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
AE + ++++ I+Y ++K+ ++ + G+KA +Y+A L ++ ++
Sbjct: 906 AEIMELIKKKFPRATGIVYCLSKKDCDQLSAEMRCAGIKAKSYHAGLGDAEREATQKDWI 965
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
+K++VV ATIAFGMGIDK +VR +IH+ P+S+E YYQEAGRAGRDG LA CVL+ N S
Sbjct: 966 TDKIKVVCATIAFGMGIDKPDVRYVIHHSMPKSIEGYYQEAGRAGRDGELATCVLFYNYS 1025
Query: 620 SMPTLLPSRRSED-------QTKQAYRMLSDCFR---YGMNTSCCRAKILVEYFGEDFSH 669
M L R+ D + KQ + L + FR Y N + CR ++YF E F+
Sbjct: 1026 DM---LRYRKMMDHDSSIPFEAKQVH--LHNLFRMVNYCENVADCRRTQQLDYFAEHFTR 1080
Query: 670 EKC-----QLCDVCV 679
E+C CD C+
Sbjct: 1081 EQCLENRASACDNCL 1095
>gi|425470694|ref|ZP_18849554.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9701]
gi|389883511|emb|CCI36062.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9701]
Length = 701
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/247 (41%), Positives = 146/247 (59%), Gaps = 28/247 (11%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK HFG+ + Q++ + A L + D LV+ TG GKSLCFQ+PAL+ V VV+SPLI+
Sbjct: 11 LKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVSPLIA 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVIRLIKP---- 277
LM DQ + L+ +G+ A FL S +V ++ L+G ++YV PE RL+ P
Sbjct: 71 LMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPE---RLLSPSFLD 127
Query: 278 -LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L + G+A A+DE HCVS WGHDFRP+YR++ +R+ F + +P++AL
Sbjct: 128 FLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPS---------VPILAL 178
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIY 396
TATAT QVREDI++ L + + T + SF RPNL + V+ KTS K + QL
Sbjct: 179 TATATQQVREDIIQQLGL-RDTSIHIASFNRPNLYYEVQ-PKTS------KSYQQLYQYI 230
Query: 397 TKKKKTG 403
+K +G
Sbjct: 231 KGQKGSG 237
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 100/174 (57%), Gaps = 5/174 (2%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+ G I+Y +RK +A+ L G+ A Y+A + + + T F + ++++VATI
Sbjct: 233 QKGSGIVYCISRKTVDQVAEQLQKDGINALPYHAGMEDRERSQNQTRFIRDDVQIMVATI 292
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPS 627
AFGMGI+K +VR ++HY P++LE YYQE+GRAGRDG A C L +A+ + +
Sbjct: 293 AFGMGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQ 352
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
+ +++ ++A + L Y T C R+ +L YFGE F+ C CD C +G
Sbjct: 353 KTEQNEQQKARQQLRQVLDYAEGTECRRSSVL-GYFGESFAG-NCGNCDNCRNG 404
>gi|340786036|ref|YP_004751501.1| ATP-dependent DNA helicase [Collimonas fungivorans Ter331]
gi|340551303|gb|AEK60678.1| ATP-dependent DNA helicase [Collimonas fungivorans Ter331]
Length = 614
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 139/229 (60%), Gaps = 19/229 (8%)
Query: 150 EVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPA 209
+V GSD + +L+ FG+ S + Q E +S D LVL TG GKSLC+QIPA
Sbjct: 8 DVSAGSD--PQALHILQTVFGYPSFRGQQAEIVSHVANGGDALVLMPTGGGKSLCYQIPA 65
Query: 210 LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYV 266
LL V VV+SPLI+LM DQ L++ GV A FL S Q +++E++ G ++YV
Sbjct: 66 LLRDGVGVVVSPLIALMQDQVDALAEVGVRAAFLNSTQTYEEASQIERRVRSGDLDLVYV 125
Query: 267 CPETVIRLIKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLK 325
PE RL+ P L ES IALFAIDE HCVS+WGHDFRP+Y +LS+L E F
Sbjct: 126 APE---RLLTPRCLDLLESSKIALFAIDEAHCVSQWGHDFRPEYIKLSILHERFP----- 177
Query: 326 SLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P +ALTATA Q RE+I L + +G +FV +SF RPN+R+ +
Sbjct: 178 ----QVPRIALTATADQQTREEIALRLQLEQGARFV-SSFDRPNIRYQI 221
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 103/207 (49%), Gaps = 18/207 (8%)
Query: 489 SFERTDLLNKPAER-------LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + E+ L +Q I+Y +RK+ A++L G++A
Sbjct: 211 SFDRPNIRYQIVEKANGRKQLLDFIQSEHAGDAGIVYCLSRKKVEETAEFLEQQGIQALP 270
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A + +Q R F V+VATIAFGMGIDK +VR + H P+S+E YYQE G
Sbjct: 271 YHAGMDYAQRTRNQGRFLREDGIVMVATIAFGMGIDKPDVRFVAHLDLPKSIEGYYQETG 330
Query: 602 RAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT------KQAYRMLSDCFRYGMNTSCCR 655
RAGRDG A+ + L ++ RR D++ K+ + D T CR
Sbjct: 331 RAGRDGGPANAWMAYGLQD---VVQQRRMIDESEAGEVFKRVLGVKLDAMLGLCETLHCR 387
Query: 656 AKILVEYFGEDFSHEKCQLCDVCVDGP 682
L++YFG+ E+C CD C+ P
Sbjct: 388 RVRLLDYFGQ--GSERCGNCDTCMSPP 412
>gi|114332470|ref|YP_748692.1| ATP-dependent DNA helicase RecQ [Nitrosomonas eutropha C91]
gi|114309484|gb|ABI60727.1| ATP-dependent DNA helicase RecQ [Nitrosomonas eutropha C91]
Length = 539
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 137/229 (59%), Gaps = 19/229 (8%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
V+ +LL++ FG++ + Q E ++ + CLVL TG GKSLC+Q+PALL V +V
Sbjct: 6 VRAQTLLREIFGYTEFRGQQAEIITHIANGNSCLVLMPTGGGKSLCYQLPALLRDGVAIV 65
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVI--R 273
ISPLI+LM +Q S L + GV A +L S Q +EQ L G Y ++YV PE ++ R
Sbjct: 66 ISPLIALMENQVSVLHERGVRATYLNSTQTSKAAAVIEQDMLAGNYDLVYVAPERLLTNR 125
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
LQR+ IALFAIDE HCVS+WGHDFRP+Y RLS+L E F +P
Sbjct: 126 FHALLQRIP----IALFAIDEAHCVSQWGHDFRPEYGRLSMLPEKFPG---------VPR 172
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
+ALTA+A + R DIL+ L + + F+ +SF RPNL + + S R
Sbjct: 173 IALTASADARTRTDILRCLELGQARAFI-SSFDRPNLCYRITARSNSRR 220
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 105/210 (50%), Gaps = 19/210 (9%)
Query: 484 RDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYN 543
R T RS R LLN Q P E G I+Y +RK+T A +L + A AY+
Sbjct: 211 RITARSNSRRQLLN-----FIRNQHPGEAG--IVYCQSRKKTEETAAWLNANHIPALAYH 263
Query: 544 ASLPKSQLRRVHTE--FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
A + ++ +R H + EN + V++AT AFG+GIDK ++R + H P+S+E+YYQE G
Sbjct: 264 AGM-ETPVRTQHQKKFLRENGI-VMIATSAFGLGIDKPDIRFVAHLDLPRSIESYYQETG 321
Query: 602 RAGRDGHLADCVLYANLSSMPTLLPSRRSED-----QTKQAYRMLSDCFRYGMNTSCCRA 656
RAGRDG AD + S + L S +QA D T+ CR
Sbjct: 322 RAGRDGLPADAWMVYGPSDIIRLRYQAESNAGQISIPVQQAATARLDALLALCETTACRR 381
Query: 657 KILVEYFGE--DFSHE-KCQLCDVCVDGPP 683
L++YFGE D S E C CD C+ P
Sbjct: 382 TRLLDYFGEPSDSSSELACGNCDACLTTTP 411
>gi|425461242|ref|ZP_18840722.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9808]
gi|389825935|emb|CCI23927.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9808]
Length = 701
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 143/251 (56%), Gaps = 28/251 (11%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ +LK HFG+ + Q++ + A L D LV+ TG GKSLCFQ+PAL+ V VV+S
Sbjct: 7 LEKVLKYHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVS 66
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ + L+ +G+ A FL S +V E L+G ++YV PE RL+ P
Sbjct: 67 PLIALMQDQVTALADNGIGATFLNSTLNAKQVRDRESLILQGKIKLLYVAPE---RLLSP 123
Query: 278 -----LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
L + G+A A+DE HCVS WGHDFRP+YR++ +R+ F + +P
Sbjct: 124 SFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPS---------VP 174
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQL 392
++ALTATAT QVREDI++ L + + + SF RPNL + V RA K + QL
Sbjct: 175 ILALTATATQQVREDIIQQLGLRDASIHI-ASFNRPNLYYEV-------RAKTSKSYQQL 226
Query: 393 IDIYTKKKKTG 403
KK +G
Sbjct: 227 YQYIKGKKGSG 237
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 99/172 (57%), Gaps = 5/172 (2%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G I+Y +RK +A++L G+ A Y+A + + T F + ++++VATIAF
Sbjct: 235 GSGIVYCISRKTVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAF 294
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRR 629
GMGI+K +VR ++HY P++LE YYQE+GRAGRDG A C L +A+ + + +
Sbjct: 295 GMGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKT 354
Query: 630 SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
+++ ++A + L Y T C R+ +L YFGE F+ C CD C +G
Sbjct: 355 EQNEQQKARQQLRQVLDYAEGTECRRSSVL-GYFGESFAG-NCGNCDNCRNG 404
>gi|427733629|ref|YP_007053173.1| ATP-dependent DNA helicase RecQ [Rivularia sp. PCC 7116]
gi|427368670|gb|AFY52626.1| ATP-dependent DNA helicase RecQ [Rivularia sp. PCC 7116]
Length = 719
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 136/222 (61%), Gaps = 15/222 (6%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK HFG+ S ++ Q+E + L + D LV+ TG GKSLCFQ+PAL+ + VV+SPLI+
Sbjct: 11 LKHHFGYDSFRSPQREIIVEALENRDLLVIMPTGGGKSLCFQLPALMKEGLTVVVSPLIA 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L K+G+ A FL S +KV EQ L G ++YV PE ++ R + L
Sbjct: 71 LMQDQVDGLRKNGIPATFLNSSVSPHKVRMREQAILAGKVKLLYVAPERLLSERFLPLLD 130
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ GI+ FAIDE HCVS+WGHDFRP+YR++ LR+ + ++P+ ALTAT
Sbjct: 131 LVHHQIGISAFAIDEAHCVSEWGHDFRPEYRQMISLRQRYP---------NVPIWALTAT 181
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
AT +VR DI+K L + K + SF R NL + V+ K +S
Sbjct: 182 ATERVRLDIIKQLGL-KQPNVHIASFNRQNLYYEVRPKKKNS 222
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 139/293 (47%), Gaps = 23/293 (7%)
Query: 489 SFERTDLL--------NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAA 540
SF R +L N E L ++Q+ +G IIY TRK+ +A L + A
Sbjct: 205 SFNRQNLYYEVRPKKKNSYVELLGLIQD--NEGSGIIYCLTRKKVEELAFKLQHDKISAL 262
Query: 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A L + T+F + ++VATIAFGMGI+K +VR ++HY ++LE+YYQE+
Sbjct: 263 PYHAGLSDVERSENQTKFIRDDARIIVATIAFGMGINKPDVRFVVHYDISRNLESYYQES 322
Query: 601 GRAGRDGHLADCVLYANLSSMPT---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG + C+L+ + S + T L+ + +E + A L Y T C RA
Sbjct: 323 GRAGRDGESSRCMLFLSYSDVKTIEWLIDQKSNEQEQMIAKHQLRQMIDYAEGTDCRRA- 381
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYS 717
I + YFGE F+ + P E + EA + +A +Q M +
Sbjct: 382 IQLSYFGERFTGNCGNCDNCNNPKPVE--DWTIEAMKFLSCVAR-CKQRFGMKHIIDVLR 438
Query: 718 GIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
G K QK + + + K+ I + L WR L R + ++G + + D
Sbjct: 439 GSKTQKVLSKGHDKLSTYGIGKDR------TLDEWRMLGRSLLHQGLLEQTTD 485
>gi|358638633|dbj|BAL25930.1| ATP-dependent DNA helicase protein [Azoarcus sp. KH32C]
Length = 609
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 136/216 (62%), Gaps = 15/216 (6%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG+++ + Q+ ++ A D LVL TG GKSLC+Q+PALL VV+SPLI
Sbjct: 15 VLEHVFGYTAFRGEQEAIVTHVGAGGDALVLMPTGGGKSLCYQVPALLRSGTAVVVSPLI 74
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ S L + GV A +L S Q ++ VE+ + G ++YV PE ++ RL+ L
Sbjct: 75 ALMQDQVSALQEAGVAAAYLNSSQAQDESAAVERDLIEGRLDLLYVAPERLLTARLLGTL 134
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
RL R IALFAIDE HCVS+WGHDFRP+Y +LSVL E + +P +ALTA
Sbjct: 135 DRLHRDRRIALFAIDEAHCVSQWGHDFRPEYLQLSVLPERYPG---------VPRIALTA 185
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA + RE+I L +++ +FV +SF RPN+R+ +
Sbjct: 186 TADPETREEIAARLGLAEARRFV-SSFDRPNIRYRM 220
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 14/205 (6%)
Query: 487 DRSFERTDLLNKPAER---LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYN 543
DR R +++K R L+ ++E E I+Y +R++ A +L G+++ Y+
Sbjct: 212 DRPNIRYRMVDKDNPRNQLLAFIREDHEGDAGIVYCLSRRKVEETAAWLEEQGIRSLPYH 271
Query: 544 ASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRA 603
A +P+ F V+VATIAFGMGIDK +VR + H P+S+E YYQE GRA
Sbjct: 272 AGMPQDVRAANQNRFLREDGIVMVATIAFGMGIDKPDVRFVAHLDLPRSIEGYYQETGRA 331
Query: 604 GRDGHLADCVLYANLSSMPTLLPSRRSEDQT------KQAYRMLSDCFRYGMNTSCCRAK 657
GRDG + + ++ RR D++ K+ R D + T+ CR +
Sbjct: 332 GRDGLPSQAWMAWGAQD---IVQQRRMIDESEGNEDFKRRARARLDALVGLVETTACRRQ 388
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDGP 682
L+ +FGE+ + C CD C++ P
Sbjct: 389 HLLAHFGEE--GQACGNCDNCLEPP 411
>gi|116620087|ref|YP_822243.1| ATP-dependent DNA helicase RecQ [Candidatus Solibacter usitatus
Ellin6076]
gi|116223249|gb|ABJ81958.1| ATP-dependent DNA helicase, RecQ family [Candidatus Solibacter
usitatus Ellin6076]
Length = 602
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 136/217 (62%), Gaps = 19/217 (8%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
++S LK+++G+ + + Q+ + + + D V+ TG GKSLC+Q+PAL G+ VVVIS
Sbjct: 4 LHSALKRYWGYDTFRPMQERIIQSLMGGADVAVVMPTGGGKSLCYQLPALALGQTVVVIS 63
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIR--LI 275
PLI+LM DQ ++L+ GV A + S Q + +V + A G + +IY+ PE + R I
Sbjct: 64 PLIALMQDQVAQLADMGVPAALINSSQASDEQREVMRAATEGAFRLIYISPERLARQDTI 123
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
LQR+ +A FAIDE HC+S+WGH+FRP+YR+LS LRENF D P+ A
Sbjct: 124 GWLQRIP----LAFFAIDEAHCISEWGHEFRPEYRQLSSLRENFP---------DHPIAA 170
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRF 372
TA+AT +VR DIL L + + KF+ SF R NLR+
Sbjct: 171 FTASATQRVRHDILAQLRLRQPHKFI-ASFHRANLRY 206
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 10/174 (5%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
I+Y PT +L G + A Y+ + RR + +++ V+V TIAFG+
Sbjct: 232 VIVYAPTIAAVEQTVDFLEGQRIAAVPYHGQMDNGIRRRNQERWMNDEVRVMVGTIAFGL 291
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN------LSSMPTLLPSR 628
GI+K VR +IH P+S+E YYQEAGRAGRDG ADCV+ L+ L
Sbjct: 292 GINKPAVRAVIHTSLPKSIEQYYQEAGRAGRDGLPADCVVLWQARDAGLLAYFINQLQDP 351
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
+++ + YR + R + ++ CR + +FG+ +C++CD C + P
Sbjct: 352 VEKERGWERYRTI----RRFVESADCRHLQICTHFGQVPKWTRCEMCDACGNAP 401
>gi|425466065|ref|ZP_18845368.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9809]
gi|389831578|emb|CCI25550.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9809]
Length = 703
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 137/225 (60%), Gaps = 21/225 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK HFG+ + Q++ + A L + D LV+ TG GKSLCFQ+PAL+ V VV+SPLI+
Sbjct: 11 LKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVSPLIA 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVIRLIKP---- 277
LM DQ + L+ +G+ A FL S +V ++ L+G ++YV PE RL+ P
Sbjct: 71 LMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPE---RLLSPSFLD 127
Query: 278 -LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L + G+A A+DE HCVS WGHDFRP+YR++ +R+ F + +P++AL
Sbjct: 128 FLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPS---------VPILAL 178
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
TATAT QVREDI++ L + + T + SF RPNL + V+ + S
Sbjct: 179 TATATQQVREDIIQQLGL-RDTSIHIASFNRPNLYYEVQPKTSKS 222
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 100/174 (57%), Gaps = 5/174 (2%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+ G I+Y +RK +A+ L G+ A Y+A + + T F + ++++VATI
Sbjct: 233 QKGAGIVYCISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATI 292
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPS 627
AFGMGI+K +VR +IHY P++LE YYQE+GRAGRDG A C L +A+ + +
Sbjct: 293 AFGMGINKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQ 352
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
+ +++ ++A + L Y T C R+++L YFGE F+ C CD C +G
Sbjct: 353 KTEQNEQQKARQQLRQVLDYAEGTECRRSRVL-GYFGESFAG-NCGNCDNCRNG 404
>gi|332882051|ref|ZP_08449686.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|357048209|ref|ZP_09109763.1| ATP-dependent DNA helicase RecQ [Paraprevotella clara YIT 11840]
gi|332679975|gb|EGJ52937.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|355528792|gb|EHG98270.1| ATP-dependent DNA helicase RecQ [Paraprevotella clara YIT 11840]
Length = 608
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 107/255 (41%), Positives = 144/255 (56%), Gaps = 26/255 (10%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ ++LK++FG S + Q++ + LA HD +VL TG GKSLC+Q+PAL+ VVIS
Sbjct: 1 MQNILKRYFGFDSFRPLQEDIIGNILAGHDVVVLMPTGGGKSLCYQVPALMREGTTVVIS 60
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKP 277
PLISLM DQ L +GV A L S + +V LRG ++Y+ PE RL+
Sbjct: 61 PLISLMKDQVEGLRANGVPAAALNSMNDEAESARVRAACLRGELKLLYISPE---RLMLE 117
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L L ++LFA+DE HC+S+WGHDFRP+Y +L +LR+ F D+P++ALT
Sbjct: 118 LPYLIRDMKVSLFAVDEAHCISQWGHDFRPEYAQLGLLRQTFP---------DVPIVALT 168
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK---HSKTSSRA-----SYKKDF 389
ATA REDI K L +S F+ +SF RPNL VK K RA + D
Sbjct: 169 ATADRLTREDIQKQLALSDPVVFI-SSFDRPNLSLDVKRGYQKKDKDRAILELIARHPDD 227
Query: 390 CQLIDIYTKKKKTGE 404
C + IY KKT E
Sbjct: 228 CGI--IYCLSKKTTE 240
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 99/171 (57%), Gaps = 2/171 (1%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
D IIY ++K T S+A+ L G + A AY+A LP + R +F ++++VV AT+A
Sbjct: 226 DDCGIIYCLSKKTTESVAEMLRGHDIAAVAYHAGLPTEERERAQDDFIHDRVQVVCATVA 285
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSE 631
FGMGIDK NVR +IHY P+S+E +YQE GRAGRDG A+ VL+ +L + L +
Sbjct: 286 FGMGIDKSNVRFVIHYNLPKSIEGFYQEIGRAGRDGLPAETVLFYSLGDLVQLSKFAQES 345
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
Q + L Y + CR +IL+ YFGE + C CDVC + P
Sbjct: 346 GQREINMEKLRRMQEYA-ESDVCRRRILLNYFGEH-TDGDCGNCDVCKNPP 394
>gi|166362830|ref|YP_001655103.1| ATP-dependent DNA helicase [Microcystis aeruginosa NIES-843]
gi|166085203|dbj|BAF99910.1| ATP-dependent DNA helicase [Microcystis aeruginosa NIES-843]
Length = 703
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 137/225 (60%), Gaps = 21/225 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK HFG+ + Q++ + A L + D LV+ TG GKSLCFQ+PAL+ V VV+SPLI+
Sbjct: 11 LKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVSPLIA 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVIRLIKP---- 277
LM DQ + L+ +G+ A FL S +V ++ L+G ++YV PE RL+ P
Sbjct: 71 LMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPE---RLLSPSFLD 127
Query: 278 -LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L + G+A A+DE HCVS WGHDFRP+YR++ +R+ F + +P++AL
Sbjct: 128 FLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPS---------VPILAL 178
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
TATAT QVREDI++ L + + T + SF RPNL + V+ + S
Sbjct: 179 TATATQQVREDIIQQLGL-RDTSIHIASFNRPNLYYEVQPKTSKS 222
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 100/174 (57%), Gaps = 5/174 (2%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+ G I+Y +RK +A+ L G+ A Y+A + + T F + ++++VATI
Sbjct: 233 QKGAGIVYCISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATI 292
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPS 627
AFGMGI+K +VR +IHY P++LE YYQE+GRAGRDG A C L +A+ + +
Sbjct: 293 AFGMGINKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQ 352
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
+ +++ ++A + L Y T C R+++L YFGE F+ C CD C +G
Sbjct: 353 KTEQNEQQKARQQLRQVLDYAEGTECRRSRVL-GYFGESFAG-NCGNCDNCRNG 404
>gi|422302785|ref|ZP_16390144.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9806]
gi|389787941|emb|CCI16794.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9806]
Length = 703
Score = 179 bits (454), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 137/225 (60%), Gaps = 21/225 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK HFG+ + Q++ + A L + D LV+ TG GKSLCFQ+PAL+ V VV+SPLI+
Sbjct: 11 LKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVSPLIA 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVIRLIKP---- 277
LM DQ + L+ +G+ A FL S +V ++ L+G ++YV PE RL+ P
Sbjct: 71 LMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPE---RLLSPSFLD 127
Query: 278 -LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L + G+A A+DE HCVS WGHDFRP+YR++ +R+ F + +P++AL
Sbjct: 128 FLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPS---------VPILAL 178
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
TATAT QVREDI++ L + + T + SF RPNL + V+ + S
Sbjct: 179 TATATQQVREDIIQQLGL-RDTSIHIASFNRPNLYYEVQPKTSKS 222
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 99/174 (56%), Gaps = 5/174 (2%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+ G I+Y +RK +A+ L G+ A Y+A + + T F + ++++VATI
Sbjct: 233 QKGAGIVYCISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATI 292
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPS 627
AFGMGI+K +VR +IHY P++LE YYQE+GRAGRDG A C L +A+ + +
Sbjct: 293 AFGMGINKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQ 352
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
+ +++ ++A + L Y T C R+ +L YFGE FS C CD C +G
Sbjct: 353 KTEQNEQQKARQQLRQVLDYAEGTECRRSSVL-GYFGESFSG-NCANCDNCRNG 404
>gi|440756898|ref|ZP_20936098.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa TAIHU98]
gi|440172927|gb|ELP52411.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa TAIHU98]
Length = 701
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/251 (40%), Positives = 143/251 (56%), Gaps = 28/251 (11%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ +LK HFG+ + Q++ + A L D LV+ TG GKSLCFQ+PAL+ V VV+S
Sbjct: 7 LEKVLKHHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVS 66
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ + L+ +G+ A FL S +V E L+G ++YV PE RL+ P
Sbjct: 67 PLIALMQDQVTALADNGIGATFLNSTLNAKQVRDRESLILQGKIKLLYVAPE---RLLSP 123
Query: 278 -----LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
L + G+A A+DE HCVS WGHDFRP+YR++ +R+ F + +P
Sbjct: 124 SFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPS---------VP 174
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQL 392
++ALTATAT QVREDI++ L + + + SF RPNL + V RA K + QL
Sbjct: 175 ILALTATATQQVREDIIQQLGLRDASIHI-ASFNRPNLYYEV-------RAKTSKSYQQL 226
Query: 393 IDIYTKKKKTG 403
+K +G
Sbjct: 227 YQYIKGQKGSG 237
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 99/174 (56%), Gaps = 5/174 (2%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+ G I+Y +RK +A+ L G+ A Y+A + + T F + ++++VATI
Sbjct: 233 QKGSGIVYCISRKTVDQVAEQLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATI 292
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPS 627
AFGMGI+K +VR ++HY P++LE YYQE+GRAGRDG A C L +A+ + +
Sbjct: 293 AFGMGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQ 352
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
+ +++ ++A + L Y T C R+ +L YFGE F+ C CD C +G
Sbjct: 353 KTEQNEQQKARQQLRQVLDYAEGTECRRSSVL-GYFGESFAG-NCGNCDNCRNG 404
>gi|390440423|ref|ZP_10228752.1| ATP-dependent DNA helicase recQ [Microcystis sp. T1-4]
gi|389836165|emb|CCI32878.1| ATP-dependent DNA helicase recQ [Microcystis sp. T1-4]
Length = 703
Score = 179 bits (453), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 102/247 (41%), Positives = 145/247 (58%), Gaps = 28/247 (11%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK HFG+ + Q++ + A L + D LV+ TG GKSLCFQ+PAL+ V VV+SPLI+
Sbjct: 11 LKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVSPLIA 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVIRLIKP---- 277
LM DQ + L+ +G+ A FL S +V ++ L+G ++YV PE RL+ P
Sbjct: 71 LMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPE---RLLSPSFLD 127
Query: 278 -LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L + G+A A+DE HCVS WGHDFRP+YR++ +R+ F + +P++AL
Sbjct: 128 FLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPS---------VPILAL 178
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIY 396
TATAT QVREDI++ L + + T SF RPNL + V+ KTS K + QL
Sbjct: 179 TATATQQVREDIIQQLGL-RDTSIHTASFNRPNLYYEVQ-PKTS------KSYQQLYQYI 230
Query: 397 TKKKKTG 403
+K +G
Sbjct: 231 KGQKGSG 237
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 99/174 (56%), Gaps = 5/174 (2%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+ G I+Y +RK +A+ L G+ A Y+A + + T F + ++++VATI
Sbjct: 233 QKGSGIVYCISRKTVDKVAEQLQKDGIDALPYHAGMDDRERSENQTRFIRDDVQIMVATI 292
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPS 627
AFGMGI+K +VR ++HY P++LE YYQE+GRAGRDG A C L +A+ + +
Sbjct: 293 AFGMGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQ 352
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
+ +++ ++A + L Y T C R+ +L YFGE F+ C CD C +G
Sbjct: 353 KTEQNEQQKARQQLRQVLDYAEGTECRRSSVL-GYFGESFAG-NCGNCDNCRNG 404
>gi|427416527|ref|ZP_18906710.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 7375]
gi|425759240|gb|EKV00093.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 7375]
Length = 736
Score = 179 bits (453), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 138/222 (62%), Gaps = 21/222 (9%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ + LK FG+ +++Q+ + L + D LV+ TG GKSLC+Q+PALL V +V+S
Sbjct: 13 LEAALKHFFGYDDFRHYQRAIIEQVLKNQDVLVIMPTGGGKSLCYQLPALLRLGVTIVVS 72
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ L +G+ A FL S N+V EQ LRG ++Y+ PE RL+ P
Sbjct: 73 PLIALMQDQVRSLEDNGIAATFLNSSLTFNEVRDREQALLRGDIKLLYLAPE---RLMNP 129
Query: 278 -----LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
L+++ ++ G++ FAIDE HCVS+WGHDFRP+YR+L L++ F +P
Sbjct: 130 SFWPLLEQIQQTVGLSAFAIDEAHCVSEWGHDFRPEYRQLFQLKQQFP---------QVP 180
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+MALTATAT +VR+DI++ L ++ FV + F R NL + V
Sbjct: 181 VMALTATATERVRQDIIQQLRLNDPQVFV-SGFNRQNLYYEV 221
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 141/263 (53%), Gaps = 13/263 (4%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+ G IIY +RK IA L G+ A Y+A L + + +F + + ++VATI
Sbjct: 239 QSGAGIIYCLSRKRVNEIAFRLKQDGISALPYHAGLSAKERQGNQEQFIRDDVRIIVATI 298
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPS 627
AFGMGI+K +VR +IHY P+++E+YYQE+GRAGRDG A+C + YA+++++ L+
Sbjct: 299 AFGMGINKPDVRFVIHYDLPRTIESYYQESGRAGRDGDPANCTVFFSYADVATVEYLISQ 358
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKN 687
+ E + + A + L Y ++ CR KI + YFGE F CQ CD C++ P +++
Sbjct: 359 KPDEQEQRIARQQLRHVINYA-ESAVCRRKIQLSYFGESFPG-NCQNCDNCLN-PVPLED 415
Query: 688 LKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLAT 747
EA + +A E+ M+ + G +K++ M+ + ++ I Q +
Sbjct: 416 WTIEAQKFLSCVARCQERF-GMNHIIDVLRGSRKKRLMELGHDQLSTYGI---GQDHSVD 471
Query: 748 DLLWWRGLARIMENKGYIREGDD 770
D WR L R + ++ + E D
Sbjct: 472 D---WRQLCRSLLHQELLAETTD 491
>gi|427400403|ref|ZP_18891641.1| ATP-dependent DNA helicase RecQ [Massilia timonae CCUG 45783]
gi|425720677|gb|EKU83596.1| ATP-dependent DNA helicase RecQ [Massilia timonae CCUG 45783]
Length = 610
Score = 178 bits (452), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 106/252 (42%), Positives = 143/252 (56%), Gaps = 25/252 (9%)
Query: 152 EIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL 211
+IG+D + +L+ FG+ + + Q E + + D LVL TG GKSLC+QIPALL
Sbjct: 4 DIGADLGARALHVLETVFGYPAFRGQQGEIVEHVASGGDALVLMPTGGGKSLCYQIPALL 63
Query: 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCP 268
V VV+SPLI+LM DQ L + GV A FL S Q ++E+ G ++YV P
Sbjct: 64 RDGVGVVVSPLIALMQDQVDALEEVGVRAAFLNSTQTFEETLRIERLVRSGEIDLVYVAP 123
Query: 269 ETVIRLIKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
E RL+ P L E+ I+LFAIDE HCVS+WGHDFRP+Y RLS+L E F
Sbjct: 124 E---RLMTPRCLELFEASRISLFAIDEAHCVSQWGHDFRPEYIRLSILHERFP------- 173
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKK 387
++P +ALTATA Q R +I L + +FV +SF RPN+R+S+ T +
Sbjct: 174 --NVPRIALTATADQQTRAEIAHRLQLEDARQFV-SSFDRPNIRYSIVEKTTGRK----- 225
Query: 388 DFCQLIDIYTKK 399
QLID T +
Sbjct: 226 ---QLIDFITSE 234
Score = 99.0 bits (245), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 99/204 (48%), Gaps = 12/204 (5%)
Query: 487 DRSFERTDLLNKPAERLSML-----QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
DR R ++ K R ++ + P + G I+Y +RK+ A +L G++A A
Sbjct: 209 DRPNIRYSIVEKTTGRKQLIDFITSEHPQDSG--IVYCLSRKKVEETADFLNEHGIRAMA 266
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A + + F + V+VATIAFGMGIDK +VR + H P+S+E YYQE G
Sbjct: 267 YHAGMEHTVRAANQARFLREENIVMVATIAFGMGIDKPDVRFVCHLDLPKSIEGYYQETG 326
Query: 602 RAGRDGHLADCVLYANLSSMPT---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG A + L + ++ +++ K+ M D T CR
Sbjct: 327 RAGRDGQPASAWMAYGLQDVVLQRRMIDESEADETFKRVLSMKLDAMLGLCETLSCRRMR 386
Query: 659 LVEYFGEDFSHEKCQLCDVCVDGP 682
L++YFGE C CD C+ P
Sbjct: 387 LLDYFGE--RSGPCGNCDTCLVPP 408
>gi|425450984|ref|ZP_18830806.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 7941]
gi|389767941|emb|CCI06812.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 7941]
Length = 701
Score = 178 bits (452), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 103/251 (41%), Positives = 145/251 (57%), Gaps = 28/251 (11%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ +LK HFG+ + Q++ + A L D LV+ TG GKSLCFQ+PAL+ V VV+S
Sbjct: 7 LEKVLKYHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVS 66
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ + L+ +G+ A FL S +V E L+G ++YV PE RL+ P
Sbjct: 67 PLIALMQDQVTALADNGIGATFLNSTLNAKQVRDRESLILQGKIKLLYVAPE---RLLSP 123
Query: 278 -----LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
L + G+A A+DE HCVS WGHDFRP+YR++ +R+ F + +P
Sbjct: 124 SFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPS---------VP 174
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQL 392
++ALTATAT QVREDI++ L + + + SF RPNL + V+ KTS K + QL
Sbjct: 175 ILALTATATQQVREDIIQQLGLRDASIHI-ASFNRPNLYYEVQ-PKTS------KSYQQL 226
Query: 393 IDIYTKKKKTG 403
KK +G
Sbjct: 227 YQYIKGKKGSG 237
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 99/172 (57%), Gaps = 5/172 (2%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G I+Y +RK +A++L G+ A Y+A + + T F + ++++VATIAF
Sbjct: 235 GSGIVYCISRKTVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAF 294
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRR 629
GMGI+K +VR ++HY P++LE YYQE+GRAGRDG A C L +A+ + + +
Sbjct: 295 GMGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKT 354
Query: 630 SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
+++ ++A + L Y T C R+ +L YFGE F+ C CD C +G
Sbjct: 355 EQNEQQKARQQLRQVLDYAEGTECRRSSVL-GYFGESFAG-NCGNCDNCRNG 404
>gi|297745728|emb|CBI15784.3| unnamed protein product [Vitis vinifera]
Length = 969
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 129/212 (60%), Gaps = 10/212 (4%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
L++++FG+S + +QK+ + L D LV+ ATGSGKSLC+Q+P L+ GK +VISPLI
Sbjct: 4 LVQRYFGYSGFRPYQKDIIQKILERRDSLVIMATGSGKSLCYQLPPLILGKTAIVISPLI 63
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ L + G+ A FL S Q D V + A G + ++++ PE +
Sbjct: 64 SLMQDQVMALKQRGIRAEFLASAQTDPTVHKNAESGTFHVLFMTPEKACSIPGSFWSKLL 123
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GI LFA+DE HC+S+WGHDFR +Y++L + L+++ D+P + LTATAT +
Sbjct: 124 KVGICLFAVDEAHCISEWGHDFRMEYKQL---------DKLRAILLDVPFVGLTATATKK 174
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
VR DI+ SL M F+ SF R NL + VK
Sbjct: 175 VRMDIINSLKMRDPNVFI-GSFDRKNLFYGVK 205
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 130/257 (50%), Gaps = 15/257 (5%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
TIIY T K+ I K L G+KA Y+ + S H F +++ V+VATIAFGM
Sbjct: 231 TIIYCTTIKDVEQIYKSLQEAGIKAGIYHGQMANSAREESHRIFIRDEVHVMVATIAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM--PTLLPSRRSED 632
GIDK N+R +IHYG P+SLE+YYQE+GR GRDG + C LY N + +
Sbjct: 291 GIDKPNIRHVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYNRGDFMKADFYCGEATGN 350
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
Q + L Y + T+ CR K L+EYFGE F +KC CD C E ++ EA
Sbjct: 351 QRRAIMDSLVAAQNYCLQTT-CRRKFLLEYFGEKFESDKCGNCDNCTISKREC-DMSREA 408
Query: 693 NILMQVI-AAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLL 750
+L+ I + +M D I G + ++ +D K+ + + ++ S
Sbjct: 409 FLLIACINSCRGHWGLNMPID--ILRGSRSKRILDAKFDKLPLHGLGKDHSSN------- 459
Query: 751 WWRGLARIMENKGYIRE 767
WW+ LA + + G I E
Sbjct: 460 WWKALAYQLISYGTISE 476
>gi|425433706|ref|ZP_18814184.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9432]
gi|389675683|emb|CCH95185.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9432]
Length = 701
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/251 (41%), Positives = 145/251 (57%), Gaps = 28/251 (11%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ +LK HFG+ + Q++ + A L D LV+ TG GKSLCFQ+PAL+ V VV+S
Sbjct: 7 LEKVLKYHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVS 66
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ + L+ +G+ A FL S +V E L+G ++YV PE RL+ P
Sbjct: 67 PLIALMQDQVTALADNGIGATFLNSTLNAKQVRDRESLILQGKIKLLYVAPE---RLLSP 123
Query: 278 -----LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
L + G+A A+DE HCVS WGHDFRP+YR++ +R+ F + +P
Sbjct: 124 SFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPS---------VP 174
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQL 392
++ALTATAT QVREDI++ L + + + SF RPNL + V+ KTS K + QL
Sbjct: 175 ILALTATATQQVREDIIQQLGLRDASIHI-ASFNRPNLYYEVQ-PKTS------KSYQQL 226
Query: 393 IDIYTKKKKTG 403
KK +G
Sbjct: 227 YQYIKGKKGSG 237
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 99/172 (57%), Gaps = 5/172 (2%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G I+Y +RK +A++L G+ A Y+A + + T F + ++++VATIAF
Sbjct: 235 GSGIVYCISRKTVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAF 294
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRR 629
GMGI+K +VR ++HY P++LE YYQE+GRAGRDG A C L +A+ + + +
Sbjct: 295 GMGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKT 354
Query: 630 SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
+++ ++A + L Y T C R+ +L YFGE F+ C CD C +G
Sbjct: 355 EQNEQQKARQQLRQVLDYAEGTECRRSSVL-GYFGESFAG-NCGNCDNCRNG 404
>gi|301789889|ref|XP_002930354.1| PREDICTED: Werner syndrome ATP-dependent helicase-like, partial
[Ailuropoda melanoleuca]
Length = 1120
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 137/216 (63%), Gaps = 13/216 (6%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
++NSL K +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + +G++ +V
Sbjct: 216 QINSL-KIYFGHSSFKPVQWKVIHSVLEEGRDNVVVMATGYGKSLCFQFPPVYSGRIGLV 274
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
ISPLISLM DQ +L V ACFLGS QP + +E G Y I+Y+ PE + L
Sbjct: 275 ISPLISLMEDQVLQLKMSNVPACFLGSAQPKSVLEDIK-SGKYRIVYMTPEFCSGNLSLL 333
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
Q+L + GI L A+DE HC+S+WGHDFR +R N G+ LK++ +P++ALTA
Sbjct: 334 QQLQANIGITLIAVDEAHCISEWGHDFRSSFR-------NLGS--LKAILPSVPIVALTA 384
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA+ +REDI++SL++ K + TSF RPNL V
Sbjct: 385 TASSSIREDIVRSLNL-KNPQITCTSFDRPNLYLEV 419
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 100/179 (55%), Gaps = 15/179 (8%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A L R VH F ++++ VVATIA
Sbjct: 445 EGPTIIYCPSRKMTEQVTAELQKLKLACGTYHAGLGVKSRREVHHSFMRDEIQCVVATIA 504
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ A+++ LL
Sbjct: 505 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLSEI 564
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGED---------FSHEKCQLCDVC 678
+E +M++ Y +++ CR K+++ +F + EKC CD C
Sbjct: 565 PNEKFRLYKLKMMAKMEEY-LHSRRCRRKLILSHFEDKQLRKASVGIMGTEKC--CDNC 620
>gi|300727023|ref|ZP_07060442.1| ATP-dependent DNA helicase RecQ [Prevotella bryantii B14]
gi|299775567|gb|EFI72158.1| ATP-dependent DNA helicase RecQ [Prevotella bryantii B14]
Length = 642
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/233 (43%), Positives = 142/233 (60%), Gaps = 23/233 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LKK++G+ S + Q++ ++ +A DC VL TG GKSLC+QIPAL V++SPLI
Sbjct: 6 ILKKYYGYDSFRPNQEDIINEVMAGKDCFVLMPTGGGKSLCYQIPALAMPGTAVIVSPLI 65
Query: 224 SLMHDQCSKLSKHGVTACFLGS-GQPDNK--VEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLMHDQ L +G+ A L S P+ + + ++ L G +IYV PE +L+ +
Sbjct: 66 SLMHDQVEALKANGIPAEALNSENNPEEETIIRRRCLSGDLKLIYVSPE---KLLSEIPY 122
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L +S I+LFAIDE HC+S+WGHDFRP+Y L ++ E+F IP+MALTATA
Sbjct: 123 LFKSIKISLFAIDEAHCISQWGHDFRPEYANLGIIHESFPG---------IPVMALTATA 173
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLI 393
R+DI+K LH++ G F+ +SF RPNL +VK R KK+ Q I
Sbjct: 174 DKLTRQDIVKLLHLN-GRTFI-SSFDRPNLSLAVK------RGYRKKEKLQYI 218
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 120/208 (57%), Gaps = 14/208 (6%)
Query: 505 MLQEPLEDGLTIIYVPTRKETLSIAKYL-CGFGVKAAAYNASLPKSQLRRVHTEFHENKL 563
M + P E G IIY +RK +A+ L G+ AY+A + + R+ F +++
Sbjct: 222 MQRHPGEAG--IIYCLSRKNAEKVAEELSASTGINCEAYHAGMSTQERARIQEGFKMDQI 279
Query: 564 EVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT 623
+VV ATIAFGMGIDK NVR ++HY P+S+E++YQE GRAGRDG A+ VL+ +L+ +
Sbjct: 280 QVVCATIAFGMGIDKSNVRWVVHYNLPKSIESFYQEIGRAGRDGAPAETVLFYSLADIIQ 339
Query: 624 LLPSRRSEDQTKQAYRM--LSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
L + +ED +Q M L Y CR +IL+ YFGE +HE C+ CD+C +
Sbjct: 340 L--RKFAEDSGQQGINMEKLKRMQEYA-EAQVCRRRILLNYFGEQTAHE-CKHCDIC-EN 394
Query: 682 PPEMKNLKEEANILMQVIAAYNEQSNSM 709
PP+ K E +++Q + ++N M
Sbjct: 395 PPQ----KFEGTVIVQKALSAVARTNEM 418
>gi|359299526|ref|ZP_09185365.1| ATP-dependent DNA helicase RecQ [Haemophilus [parainfluenzae] CCUG
13788]
gi|402304439|ref|ZP_10823509.1| ATP-dependent DNA helicase RecQ [Haemophilus sputorum HK 2154]
gi|400378027|gb|EJP30892.1| ATP-dependent DNA helicase RecQ [Haemophilus sputorum HK 2154]
Length = 601
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 131/217 (60%), Gaps = 15/217 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
++L+ FG+ + Q+E + A LA DCLV+ TG GKSLC+Q+PAL + +VISP
Sbjct: 8 QTVLQNVFGYQQFRQGQQEVIDAVLAGRDCLVIMTTGGGKSLCYQVPALCLEGITLVISP 67
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPL 278
LISLM DQ +L +G+ A +L S Q + VEQKAL G ++Y+ PE V + +
Sbjct: 68 LISLMKDQVDQLLTNGIEAAYLNSTQTQEEQQAVEQKALSGQLKLLYLSPEKV--MTQGF 125
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
RL ++ A+DE HCVS+WGHDFRP+Y L LR+ F +IPLMALTA
Sbjct: 126 FRLVSYCKVSFIAVDEAHCVSQWGHDFRPEYTLLGNLRKTFP---------NIPLMALTA 176
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
TA R DIL L ++ + L SF RPN+R++V+
Sbjct: 177 TADPTTRADILHHLRLNDPHTY-LGSFDRPNIRYTVQ 212
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 135/277 (48%), Gaps = 21/277 (7%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + I+Y +RK+ I + L + Y+A + Q V
Sbjct: 216 KPMEQLAKFINAQKGKSGIVYCNSRKKVEEITEKLSARHISVMGYHAGMSVQQRETVQNA 275
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL--- 614
F + ++VVVATIAFGMGI+K NVR ++H+ P+S+E+YYQE GRAGRD ++ V+
Sbjct: 276 FQRDNVQVVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVMFYD 335
Query: 615 ---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEK 671
YA L + LL SE + + +++ + CR +L+ YFGE
Sbjct: 336 PADYAWLQKI--LLEEPESEQRDIKQHKL--QAIGAFAESQTCRRLVLLNYFGES-RQAP 390
Query: 672 CQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLK 731
C+ CD+C+D P + L +A +M VI Q+ + + G+ +
Sbjct: 391 CKNCDICLDPPKKYDGLL-DAQKVMSVIYRTG-QTFGIHHVVAVLRGMNNVSIRQHQHDS 448
Query: 732 MFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ V I +EQS++Y W + R + + G +R+
Sbjct: 449 LSVYGIGKEQSREY-------WISVIRQLIHLGLVRQ 478
>gi|281348780|gb|EFB24364.1| hypothetical protein PANDA_020784 [Ailuropoda melanoleuca]
Length = 1113
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 137/216 (63%), Gaps = 13/216 (6%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
++NSL K +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + +G++ +V
Sbjct: 248 QINSL-KIYFGHSSFKPVQWKVIHSVLEEGRDNVVVMATGYGKSLCFQFPPVYSGRIGLV 306
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
ISPLISLM DQ +L V ACFLGS QP + +E G Y I+Y+ PE + L
Sbjct: 307 ISPLISLMEDQVLQLKMSNVPACFLGSAQPKSVLEDIK-SGKYRIVYMTPEFCSGNLSLL 365
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
Q+L + GI L A+DE HC+S+WGHDFR +R N G+ LK++ +P++ALTA
Sbjct: 366 QQLQANIGITLIAVDEAHCISEWGHDFRSSFR-------NLGS--LKAILPSVPIVALTA 416
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA+ +REDI++SL++ K + TSF RPNL V
Sbjct: 417 TASSSIREDIVRSLNL-KNPQITCTSFDRPNLYLEV 451
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 100/179 (55%), Gaps = 15/179 (8%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A L R VH F ++++ VVATIA
Sbjct: 477 EGPTIIYCPSRKMTEQVTAELQKLKLACGTYHAGLGVKSRREVHHSFMRDEIQCVVATIA 536
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ A+++ LL
Sbjct: 537 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLSEI 596
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGED---------FSHEKCQLCDVC 678
+E +M++ Y +++ CR K+++ +F + EKC CD C
Sbjct: 597 PNEKFRLYKLKMMAKMEEY-LHSRRCRRKLILSHFEDKQLRKASVGIMGTEKC--CDNC 652
>gi|391341494|ref|XP_003745065.1| PREDICTED: Werner syndrome ATP-dependent helicase-like [Metaseiulus
occidentalis]
Length = 869
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 139/249 (55%), Gaps = 23/249 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLA-HHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
L+ FGH + K Q + +S+ L D +VL ATGSGKSLC+Q P + G++ +VISPLI
Sbjct: 191 LRNFFGHETFKESQWKVISSVLTDRKDNIVLMATGSGKSLCYQFPPVYLGQLAIVISPLI 250
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPD-NKVEQKALRGMYSIIYVCPETVIRLIKPLQRLA 282
SLM DQ KL GV A FLGS Q D +++ ++ Y ++Y+ PE L L
Sbjct: 251 SLMQDQVRKLDGFGVPAAFLGSAQTDSSRIREELFNRTYRVLYLTPEFAAENSLFLTNLN 310
Query: 283 ESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATI 342
ES GI L A+DE HCVS+WGH+FR YR L LR F +IP MALTATA+
Sbjct: 311 ESVGICLVAVDEAHCVSQWGHEFRKTYRSLGELRTRF---------LEIPFMALTATASA 361
Query: 343 QVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLID------IY 396
V+ DI SL + + +T F RPNL +VK + S +D ++D IY
Sbjct: 362 NVQNDIESSLRLLQ-PWITVTPFDRPNLYLTVKR-----KTSPDRDLLSVLDPGVSTIIY 415
Query: 397 TKKKKTGEK 405
K+ T E+
Sbjct: 416 CPKRVTTEE 424
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 92/170 (54%), Gaps = 7/170 (4%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
TIIY P R T ++ L G+ A AY+A + S + F ++VATIAFGM
Sbjct: 412 TIIYCPKRVTTEEVSMLLRSKGIPANAYHAGMTPSARKETQDAFVNGTNPIIVATIAFGM 471
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL---PSRRSE 631
GIDK +VR+++HYG PQSLEAYYQE GRAGRDG + C + + S T L R
Sbjct: 472 GIDKPDVRKVVHYGAPQSLEAYYQEIGRAGRDGEPSLCATFWDSSDFDTYLLFVSKIRDM 531
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHE---KCQLCDVC 678
D + RML Y + T+ CR K ++ +F D + + + CD C
Sbjct: 532 DVVRHKTRMLKRTRAY-LETTGCRRKFMITHFSPDEAERIPMRSKCCDNC 580
>gi|253996326|ref|YP_003048390.1| ATP-dependent DNA helicase RecQ [Methylotenera mobilis JLW8]
gi|253983005|gb|ACT47863.1| ATP-dependent DNA helicase RecQ [Methylotenera mobilis JLW8]
Length = 611
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 138/224 (61%), Gaps = 21/224 (9%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
+ + L+ FG++S + Q+E + +A D LVL TG GKSLC+Q+PALL V +V
Sbjct: 9 LTAQACLQDVFGYNSFRGEQQEIVDHMVAGGDALVLMPTGGGKSLCYQLPALLRQGVGIV 68
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLI 275
+SPLI+LM DQ L + GV A FL S + +KV LRG ++YV PE RL+
Sbjct: 69 VSPLIALMQDQVDALQQLGVKAAFLNSSLNSEEFSKVTAALLRGELQVLYVAPE---RLL 125
Query: 276 KP-----LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
P L+++A+ GIALFAIDE HCVS+WGHDFRP+YR+L+VL E F
Sbjct: 126 IPNFLSLLEQVADHIGIALFAIDEAHCVSQWGHDFRPEYRKLTVLHERFP---------H 176
Query: 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P +ALTATA R +I++ L + +F+ +SF RPN+++ V
Sbjct: 177 VPRIALTATADAPTRAEIIERLALEDARQFI-SSFDRPNIKYRV 219
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 6/168 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
IIY +R++ A+ L G A Y+A L + +R H F + ++VAT+AFGM
Sbjct: 243 IIYCLSRRKVEETAERLKAKGWDALPYHAGL-DADIRHAHQRRFLREEGVIMVATVAFGM 301
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS---SMPTLLPSRRSE 631
GIDK NVR + H P+S+E YYQE GRAGRDG A+ + L +M +L + +
Sbjct: 302 GIDKPNVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMTYGLGDVVNMKQMLENSDAP 361
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ + R D ++ CR + ++ YFGE + C CD C+
Sbjct: 362 AERQHVERQKLDALLGFCESTACRHQTILRYFGEQHPGD-CGQCDNCL 408
>gi|443316688|ref|ZP_21046123.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 6406]
gi|442783715|gb|ELR93620.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 6406]
Length = 720
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 132/220 (60%), Gaps = 15/220 (6%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ + LK FG+ + Q+ A+ A L D LV+ TG GKSLC+Q+PALL V +V+S
Sbjct: 12 LEAALKHFFGYDQFRLQQRAAIEAVLNQQDALVVMPTGGGKSLCYQLPALLRLGVTIVVS 71
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVI--RLI 275
PLI+LM DQ L+ +G+ A FL S E L+G ++YV PE ++
Sbjct: 72 PLIALMQDQVEALNNNGIAATFLNSSLDLMEARSREYDLLQGRTKLLYVAPERLLSENFW 131
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L RL + G+A FAIDE HCVS+WGHDFRP+YR+L LR F IP++A
Sbjct: 132 PFLTRLQQQVGLAGFAIDEAHCVSEWGHDFRPEYRQLHRLRSAFAG---------IPMLA 182
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
LTATAT +VR+DI++ L + K + ++ SF RPNL + V+
Sbjct: 183 LTATATERVRQDIVQQLQLQK-PEVLVASFNRPNLYYEVR 221
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 146/293 (49%), Gaps = 23/293 (7%)
Query: 489 SFERTDLLN--KPAERLS---MLQEPLE-DGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF R +L +P +R + +LQ+ +G IIY +RK IA L G+ A Y
Sbjct: 210 SFNRPNLYYEVRPKDRQTYGHLLQQVQSINGAGIIYCLSRKRVDEIALRLQNDGIAALPY 269
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A LP F + + V+VATIAFGMGI+K +VR ++HY P++LE+YYQE+GR
Sbjct: 270 HAGLPDLTRAENQRRFIRDDVRVMVATIAFGMGINKPDVRFVVHYDLPRTLESYYQESGR 329
Query: 603 AGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A C + YA++S++ L+ + E + A + L Y +T CR +I
Sbjct: 330 AGRDGEPAHCTVYFGYADVSTVNYLIDQKPDEREQNIARQQLRQVIDYAEST-VCRRQIQ 388
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIY-SG 718
+ YFGE F E C CD C P ++ EA + +A E+ D + SG
Sbjct: 389 LGYFGE-FLSESCDRCDNC-RFPKPKQDWTIEAQKFLSCVARCRERFGMTHIIDVLRGSG 446
Query: 719 IKKQKFMDRPNLKMF-VSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
K+ + + L + + K R + W+ L R + ++G + E D
Sbjct: 447 KKRIRDLQHDQLSTYGIGKDRTAEE---------WKILGRSLLHQGLLEETVD 490
>gi|325298909|ref|YP_004258826.1| ATP-dependent DNA helicase RecQ [Bacteroides salanitronis DSM
18170]
gi|324318462|gb|ADY36353.1| ATP-dependent DNA helicase RecQ [Bacteroides salanitronis DSM
18170]
Length = 606
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 129/214 (60%), Gaps = 16/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG++S + Q+E +S L D LVL TG GKSLC+QIPALLT +V+SPLIS
Sbjct: 5 LKSYFGYTSFRPLQEEIISCVLQKKDTLVLMPTGGGKSLCYQIPALLTEGTAIVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + +G ++Y+ PE RL+ + L
Sbjct: 65 LMKDQVEALQNNGIIARALNSNNDETANANIRFECRQGRVKLLYISPE---RLLAEINYL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+ I+LFAIDE HC+S+WGHDFRP+Y +L+VLRE F +P++ALTATA
Sbjct: 122 LKDIHISLFAIDEAHCISQWGHDFRPEYTQLAVLREQFP---------HVPIIALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
REDI+K L M F+ +SF RPNL VK
Sbjct: 173 KITREDIVKQLAMRDPQIFI-SSFDRPNLSLDVK 205
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 108/184 (58%), Gaps = 11/184 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R T +A L GV A Y+A L + + +F ++++VV ATIAFGMG
Sbjct: 230 IVYCMSRNTTEKVADMLEEHGVSTAVYHAGLSSTIRDKAQEDFINDRVQVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ + + + ++ SR + + +
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSFADI--IMLSRFASESGQ 347
Query: 636 QAYRM--LSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEAN 693
Q M L +Y CR +IL+ YFGE H+ C CDVC + PP+ + +
Sbjct: 348 QEVNMEKLKRMQQYA-EADICRRRILLNYFGETMDHD-CGNCDVCRN-PPQ----RFDGT 400
Query: 694 ILMQ 697
IL+Q
Sbjct: 401 ILVQ 404
>gi|440680362|ref|YP_007155157.1| ATP-dependent DNA helicase RecQ [Anabaena cylindrica PCC 7122]
gi|428677481|gb|AFZ56247.1| ATP-dependent DNA helicase RecQ [Anabaena cylindrica PCC 7122]
Length = 724
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 144/244 (59%), Gaps = 22/244 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK HFG+ + Q++ + L + D +V+ TG GKSLCFQ+PALL + VV+SPLI+
Sbjct: 11 LKYHFGYDQFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L + ++A FL S KV E+ + G ++YV PE ++ R + L
Sbjct: 71 LMQDQVEALRNNNISATFLNSSLNSYKVRSREEAIMNGKVRLLYVAPERLVSDRFLPLLD 130
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ E GI+ FAIDE HCVS+WGHDFRP+YR+L +LR+ + D+P +ALTAT
Sbjct: 131 VVKEKIGISTFAIDEAHCVSEWGHDFRPEYRQLKLLRKRYP---------DVPTIALTAT 181
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKK 399
AT +VR DI++ L + K + SF R NL + V RA K+ + ++++I +
Sbjct: 182 ATDRVRADIIEQLGL-KQPSIHIASFNRQNLYYEV-------RAKSKRAYAEILEIVREN 233
Query: 400 KKTG 403
+ +G
Sbjct: 234 EGSG 237
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 117/228 (51%), Gaps = 9/228 (3%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
AE L +++E +G IIY TRK+ + L V A Y+A L + + T F
Sbjct: 224 AEILEIVRE--NEGSGIIYCLTRKKVDELTFKLQKDKVAALPYHAGLSDDERSKNQTRFI 281
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
+ + V+VATIAFGMGI+K +VR +IH P+++E YYQE+GRAGRD + C L+ + +
Sbjct: 282 RDDVRVMVATIAFGMGINKPDVRFVIHSDLPRNIEGYYQESGRAGRDDEPSRCTLFFSFA 341
Query: 620 SMPTLLPS-RRSEDQTKQ--AYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCD 676
+ T+ S + D +Q A + L Y T CR I + YFGE F+ C CD
Sbjct: 342 DVKTIEWSINQKTDPQEQLIAKQQLRQVIDYAEGTD-CRRTIQLGYFGERFAG-NCGNCD 399
Query: 677 VCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKF 724
C P +++ EA + +A E+ + D + G K QK
Sbjct: 400 NC-RYPKPVQDWTIEAMKFLSCVARCKERYGMLYIID-VLRGAKNQKI 445
>gi|332526902|ref|ZP_08402995.1| ATP-dependent DNA helicase RecQ [Rubrivivax benzoatilyticus JA2]
gi|332111344|gb|EGJ11328.1| ATP-dependent DNA helicase RecQ [Rubrivivax benzoatilyticus JA2]
Length = 634
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 133/222 (59%), Gaps = 19/222 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVV 217
+L + FG+++ + Q+E + A D LVL TG GKSLC+Q+PA+L + V V
Sbjct: 12 QQVLHEVFGYTAFRGRQREIVEHVAAGGDALVLMPTGGGKSLCYQVPAILRHRAGQGVTV 71
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVI-- 272
V+SPLI+LMHDQ L + GV A FL S G ++E++ L G ++Y PE ++
Sbjct: 72 VVSPLIALMHDQVGALDEVGVPAAFLNSTLDGDEARRIERELLAGRLVLLYAAPERILTP 131
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
R + L+ LAE +ALFAIDE HCVS+WGHDFR +Y LS L E F +P
Sbjct: 132 RFLAMLESLAERDRLALFAIDEAHCVSQWGHDFREEYLGLSALHERFP---------QVP 182
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
MALTATA REDI+ L + +FV +SF RPN+R+++
Sbjct: 183 RMALTATADAHTREDIVARLKLEDARRFV-SSFDRPNIRYTI 223
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 102/218 (46%), Gaps = 14/218 (6%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L L++ E I+Y +RK+ A +L G+ A Y+A L RR F
Sbjct: 234 LRFLRDEHEGDAGIVYCQSRKKVEDTAAWLSDEGIPALPYHAGLDAETRRRHQDRFLRED 293
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLS 619
V+VATIAFGMGIDK +VR + H P+++EAYYQE GRAGRDG AD + A++
Sbjct: 294 GLVMVATIAFGMGIDKPDVRFVAHLDLPKNIEAYYQETGRAGRDGLPADAWMTYGLADVV 353
Query: 620 SMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHE--------- 670
+ ++ ++++ K R D CR L+ YFGE +
Sbjct: 354 NQRRMIDDGEADEEFKHLQRGKLDALLALAEAHDCRRVRLLGYFGERYGEGDEHAGAVPR 413
Query: 671 -KCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSN 707
+C CD C+ PP + E A + + + +Q
Sbjct: 414 LRCGNCDNCL-APPATWDATEAARKALSCVYRFRQQGG 450
>gi|410956163|ref|XP_003984713.1| PREDICTED: Werner syndrome ATP-dependent helicase, partial [Felis
catus]
Length = 1190
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 131/218 (60%), Gaps = 13/218 (5%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVV 216
E+++N LKK+FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + GK+
Sbjct: 284 EMQIN-FLKKYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQFPPVYVGKIG 342
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
+VISPLISLM DQ +L + ACFLGS Q N +E L G Y I+YV PE +
Sbjct: 343 LVISPLISLMEDQVLQLQMSNIPACFLGSAQSKNVLEDIKL-GKYQIVYVTPEFCSGNLS 401
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
LQ+L + GI L A+DE HC+S+WGHDFR +R L L++ +P++A+
Sbjct: 402 LLQQLEANIGITLIAVDEAHCISEWGHDFRNSFRTLGSLKKALPT---------VPIVAV 452
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TATA+ +REDI+ L + K + T F RPNL V
Sbjct: 453 TATASSSIREDIIHCLKL-KNPQITCTGFDRPNLYLEV 489
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 137/288 (47%), Gaps = 53/288 (18%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + + R VH F ++++ VVATIA
Sbjct: 515 EGPTIIYCPSRKMTEEVTAELRKVKLACGTYHAGMCVTARREVHHRFMRDEIQCVVATIA 574
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYA--NLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+A ++ S LL
Sbjct: 575 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPVDIQSNRNLLSQI 634
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGED---------FSHEKCQLCDVCV 679
SE M++ Y ++ CR +I++ +F + EKC CD C
Sbjct: 635 PSEKFRLYKLNMVAKMENYLLSRR-CRRQIILSHFEDKQLRKASVGIMETEKC--CDNCR 691
Query: 680 ----------DGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKF-MDRP 728
D ++ +A Q+++A N I +KF + P
Sbjct: 692 SRLDRCFSIDDSDDTPQDFGPQA---FQLLSAVN---------------ILGEKFGIGLP 733
Query: 729 NLKMFVSKIREQSQKYLATDLL---------WWRGLARIMENKGYIRE 767
L + S + + +Y DL WW+ L+R + +G++ E
Sbjct: 734 ILFLRGSNSQRLADQYRRHDLFGNGKDHTENWWKALSRQLMTEGFLTE 781
>gi|147845197|emb|CAN79469.1| hypothetical protein VITISV_016935 [Vitis vinifera]
Length = 447
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 129/212 (60%), Gaps = 10/212 (4%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
L++++FG+S + +QK+ + L D LV+ ATGSGKSLC+Q+P L+ GK +VISPLI
Sbjct: 4 LVQRYFGYSGFRPYQKDIIQKILERRDSLVIMATGSGKSLCYQLPPLILGKTAIVISPLI 63
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ L + G+ A FL S Q D V + A G + ++++ PE +
Sbjct: 64 SLMQDQVMALKQRGIRAEFLASAQTDPTVHKNAESGTFHVLFMTPEKACSIPGSFWSKLL 123
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GI LFA+DE HC+S+WGHDFR +Y++L + L+++ D+P + LTATAT +
Sbjct: 124 KVGICLFAVDEAHCISEWGHDFRMEYKQL---------DKLRAILLDVPFVGLTATATKK 174
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
VR DI+ SL M F+ SF R NL + VK
Sbjct: 175 VRMDIINSLKMRDPNVFI-GSFDRKNLFYGVK 205
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 102/187 (54%), Gaps = 4/187 (2%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
TIIY T K+ I K L G+KA Y+ + S H F +++ V+VATIAFGM
Sbjct: 231 TIIYCTTIKDVEQIYKSLQEAGIKAGIYHGQMANSAREESHRIFIRDEVHVMVATIAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM--PTLLPSRRSED 632
GIDK N+R +IHYG P+SLE+YYQE+GR GRDG + C LY N + +
Sbjct: 291 GIDKPNIRHVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYNRGDFMKADFYCGEATGN 350
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
Q + L Y + T+ CR K L+EYFGE F +KC CD C E ++ EA
Sbjct: 351 QRRAIMDSLVAAQNYCLQTT-CRRKFLLEYFGEKFESDKCGNCDNCTISKREC-DMSREA 408
Query: 693 NILMQVI 699
+L+ I
Sbjct: 409 FLLIACI 415
>gi|339483748|ref|YP_004695534.1| ATP-dependent DNA helicase RecQ [Nitrosomonas sp. Is79A3]
gi|338805893|gb|AEJ02135.1| ATP-dependent DNA helicase RecQ [Nitrosomonas sp. Is79A3]
Length = 599
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 141/229 (61%), Gaps = 20/229 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K ++LK+ FG+ + + Q E ++ DCLVL TG GKSLC+QIPALL V +V+
Sbjct: 3 KALNILKEVFGYPAFRGQQAEVIAHLANGGDCLVLMPTGGGKSLCYQIPALLRDGVAIVV 62
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVI--RL 274
SPLI+LM +Q + L + GV A L S Q +VEQ G Y ++YV PE ++ R
Sbjct: 63 SPLIALMQNQVAALHEIGVRAAVLNSSLSQQEAAQVEQNLQAGEYDLLYVAPERLLTARF 122
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ + R+ IALFAIDE HCVS+WGHDFRP+Y +LSVL E F ++P +
Sbjct: 123 LNLITRIP----IALFAIDEAHCVSQWGHDFRPEYSQLSVLHERFS---------EVPRI 169
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
ALTATA + R++I++ L + FV +SF RPN+R+ + KT+SR+
Sbjct: 170 ALTATADMDTRKEIIERLGLDVARVFV-SSFDRPNIRYQII-DKTNSRS 216
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 107/214 (50%), Gaps = 21/214 (9%)
Query: 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
DR R ++ D N ++ L+ +Q I+Y +RK+ L G++A AY
Sbjct: 200 DRPNIR-YQIIDKTNSRSQLLTFIQAEHPGDAGIVYCLSRKKVEETTACLVDHGMRAVAY 258
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A + + +F + ++VATIAFGMGIDK +VR + H P+S+E YYQE GR
Sbjct: 259 HAGMNMQERSLNQEKFLREEGIIMVATIAFGMGIDKPDVRFVAHLDLPKSIEGYYQETGR 318
Query: 603 AGRDGHLADCVLYANLSSMPTLLPSRR--SEDQTKQAYR---------MLSDCFRYGMNT 651
AGRDG A+ + L + + RR E Q + ++ MLS C T
Sbjct: 319 AGRDGQAANAWMVYGLGDV---IQQRRMIEESQAQLKFKQVAARKLEAMLSLC-----ET 370
Query: 652 SCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEM 685
+ CR L+ YFGE C CDVC++ PPE+
Sbjct: 371 TTCRRARLLSYFGETADTAPCGNCDVCLN-PPEV 403
>gi|383760482|ref|YP_005439468.1| ATP-dependent DNA helicase RecQ [Rubrivivax gelatinosus IL144]
gi|381381152|dbj|BAL97969.1| ATP-dependent DNA helicase RecQ [Rubrivivax gelatinosus IL144]
Length = 637
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 133/222 (59%), Gaps = 19/222 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVV 217
+L + FG+++ + Q+E + A D LVL TG GKSLC+Q+PA+L + V V
Sbjct: 12 QQVLHEVFGYTAFRGRQREIVEHVAAGGDALVLMPTGGGKSLCYQVPAILRHRAGQGVTV 71
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVI-- 272
V+SPLI+LMHDQ L + GV A FL S G ++E++ L G ++Y PE ++
Sbjct: 72 VVSPLIALMHDQVGALDEVGVPAAFLNSTLDGDEARRIERELLAGRLVLLYAAPERILTP 131
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
R + L+ LAE +ALFAIDE HCVS+WGHDFR +Y LS L E F +P
Sbjct: 132 RFLAMLESLAERDRLALFAIDEAHCVSQWGHDFREEYLGLSALHERFP---------QVP 182
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
MALTATA REDI+ L + +FV +SF RPN+R+++
Sbjct: 183 RMALTATADAHTREDIVARLKLEDARRFV-SSFDRPNIRYTI 223
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 103/221 (46%), Gaps = 17/221 (7%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L L++ E I+Y +RK+ A +L G+ A Y+A L RR F
Sbjct: 234 LRFLRDEHEGDAGIVYCQSRKKVEDTAAWLSAEGIPALPYHAGLDAETRRRHQDRFLRED 293
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLS 619
V+VATIAFGMGIDK +VR + H P+++EAYYQE GRAGRDG AD + A++
Sbjct: 294 ALVMVATIAFGMGIDKPDVRFVAHLDLPKNIEAYYQETGRAGRDGLPADAWMTYGLADVV 353
Query: 620 SMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHE--------- 670
+ ++ ++++ K R D CR L+ YFGE + E
Sbjct: 354 NQRRMIDEGEADEEFKHLQRGKLDALLALAEAHDCRRVRLLGYFGERYGGEDDGDDDSGA 413
Query: 671 ----KCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSN 707
+C CD C+ PP + E A + + + +Q
Sbjct: 414 VPRLRCGNCDNCL-APPATWDATEAARKALSCVYRFRQQGG 453
>gi|221060158|ref|XP_002260724.1| ATP-dependent DNA helicase [Plasmodium knowlesi strain H]
gi|193810798|emb|CAQ42696.1| ATP-dependent DNA helicase, putative [Plasmodium knowlesi strain H]
Length = 1252
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 143/246 (58%), Gaps = 22/246 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVV 216
K+ + KKHFG+ +LK+FQ EA+ A D L++ ATG GKSLC+QIP+L+ K
Sbjct: 35 KMEAAQKKHFGYKNLKDFQIEAVHAVFHKRDSLIVMATGMGKSLCYQIPSLMEEAKKKFT 94
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQP--DNKVEQKALRGMYSIIYVCPETVIRL 274
VVISPLISLM DQ L + G+++ FLGSGQ N+V + GMY I+Y PE +
Sbjct: 95 VVISPLISLMTDQVDNLKRKGISSVFLGSGQKISKNQVLTEIKHGMYKIVYCSPEFALNN 154
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ L + I L AIDEVHC+S+WGHDFRP YR+L + LK + IP M
Sbjct: 155 KQMFVML--RKRILLLAIDEVHCMSEWGHDFRPTYRKL---------HELKQILVGIPFM 203
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFF-RPNLRFSVKHSKTSSRASYKKDFCQLI 393
LTAT T +V+ DILK+L+ T + TS + NL + V+ + + D ++
Sbjct: 204 GLTATCTREVQNDILKNLNFDMKTCLIKTSSVNKRNLFYCVR-----EKTNILNDLKDVL 258
Query: 394 DIYTKK 399
DI +K
Sbjct: 259 DIPNRK 264
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 95/162 (58%), Gaps = 12/162 (7%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
T+IYV ++KE +I +L G+ Y+A L + + H +F +++++++VAT+AFGM
Sbjct: 284 TLIYVTSKKECENIFSFLKEKGLLVRMYHADLSNDEKKEAHEKFLKDEVQIIVATVAFGM 343
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL---SSMPTLLPSRRSE 631
GIDK ++RRIIHYG+ +SLEAY Q+ GRAGRD A+ +L+ ++ S + +L
Sbjct: 344 GIDKPDIRRIIHYGFSRSLEAYVQQVGRAGRDNSNAEAILFFHVNDESKIKNILLRENIA 403
Query: 632 D--------QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGE 665
+ + + M +D Y +T C R KI EYF E
Sbjct: 404 NNLIETNFQRVEHIISMFTDASDYAYSTICRRKKIY-EYFDE 444
>gi|326918448|ref|XP_003205500.1| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase-like [Meleagris gallopavo]
Length = 1569
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 138/231 (59%), Gaps = 21/231 (9%)
Query: 145 VSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLA-HHDCLVLAATGSGKSL 203
+S P E+ I S LK +FGHSS K Q + + + L D LV+ ATG GKSL
Sbjct: 579 LSVPSEIHI---------SCLKMYFGHSSFKPVQWKVIRSVLEDKRDNLVVMATGYGKSL 629
Query: 204 CFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSI 263
C+Q P + TG +VI PLISLM DQ +L+ G+++C LGS Q + +++ G+Y +
Sbjct: 630 CYQFPPVYTGSTGIVICPLISLMEDQVLQLTMSGISSCLLGSAQSKD-IKESVKAGLYRV 688
Query: 264 IYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANN 323
IY+ PE ++ LQ + + GIAL AIDE HC+S+WGHDFR +R+L N+
Sbjct: 689 IYMTPEFCSGNLELLQDIDRTIGIALIAIDEAHCISEWGHDFRNSFRKL---------NS 739
Query: 324 LKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LK +P++ALTATA+ +REDI+ L++ K + TSF RPNL V
Sbjct: 740 LKKALPSVPIVALTATASPSIREDIVNCLNL-KNPQITCTSFDRPNLYLEV 789
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 140/282 (49%), Gaps = 33/282 (11%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TI+Y P+RK T + L GV AY+A + + R H +F ++++ VVAT+A
Sbjct: 816 EGPTIVYCPSRKATEQVLFELNKLGVTCGAYHAGMGIQKRRDTHHQFMRDEIQCVVATVA 875
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R +IHYG P+ +E+YYQE GRAGRDG A C VL+ A+L LL
Sbjct: 876 FGMGINKADIRMVIHYGAPKEMESYYQEIGRAGRDGLPASCHVLWTAADLVLNRRLLNEI 935
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGED---------FSHEKCQLCDVC- 678
+E +ML +Y ++++ CR KI++ +F + E+C CD C
Sbjct: 936 HNEKFRSYKLKMLEKMEKY-LSSNSCRRKIILSHFEDKQLRKVSSGIMGTEEC--CDNCR 992
Query: 679 ---------VDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPN 729
D +++ ++A L+ ++A E+ + G Q+ DR
Sbjct: 993 CRTSCLATSSDSEGGLQDFGKQAYQLLSAVSALEEKFGTR-VPILFLRGSNSQRLPDRYR 1051
Query: 730 LKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDDR 771
++ ++ WW+ L++ + +G++RE R
Sbjct: 1052 KHPLYGSGKDWTEN-------WWKSLSQQLIMEGFLREVSGR 1086
>gi|119488495|ref|ZP_01621668.1| ATP-dependent DNA helicase RecQ [Lyngbya sp. PCC 8106]
gi|119455306|gb|EAW36446.1| ATP-dependent DNA helicase RecQ [Lyngbya sp. PCC 8106]
Length = 335
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 139/244 (56%), Gaps = 22/244 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK FG+ S + Q+E + L D L++ TG GKSLCFQ+PALL + VV+SPLI+
Sbjct: 19 LKHFFGYDSFRPGQREIIEQALQRRDLLIVMPTGGGKSLCFQLPALLKPGITVVVSPLIA 78
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L +G+ A FL S ++ E L+G ++YV PE ++ R + L
Sbjct: 79 LMQDQVIALEDNGIAANFLNSTLLPEELRSREAAILKGKIKLVYVAPERLLGERFLSFLD 138
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ GI+ FAIDE HCVS+WGHDFRP+YR+L LR + IP+MALTAT
Sbjct: 139 VVNTQVGISAFAIDEAHCVSEWGHDFRPEYRQLKKLRHRYP---------QIPMMALTAT 189
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKK 399
AT +VREDI++ L +++ + SF RPNL + V T S F QL+ I +
Sbjct: 190 ATPRVREDIIEQLALNEPLIHI-ASFLRPNLYYEVIPKHTHS-------FKQLLKIIQQA 241
Query: 400 KKTG 403
+G
Sbjct: 242 GGSG 245
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 58/93 (62%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G IIY TRK +A L G+ Y+ LP + R F + +EV+VAT+AF
Sbjct: 243 GSGIIYCLTRKRVEYLAFKLREKGIPCLPYHGGLPDEERRENQIRFIRDDVEVMVATVAF 302
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGR 605
GMGI+K +VR ++HY ++LE+YYQEAGRAGR
Sbjct: 303 GMGINKPDVRFVVHYDLSRTLESYYQEAGRAGR 335
>gi|428778146|ref|YP_007169933.1| ATP-dependent DNA helicase RecQ [Halothece sp. PCC 7418]
gi|428692425|gb|AFZ45719.1| ATP-dependent DNA helicase RecQ [Halothece sp. PCC 7418]
Length = 709
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 134/224 (59%), Gaps = 21/224 (9%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
++ + LK++FG+ + + QK + A D L + TG GKSLC+Q+PALL + VV+
Sbjct: 3 ELETALKQYFGYETFRPGQKAIIEAVYQQRDVLAVMPTGGGKSLCYQLPALLKPGLAVVV 62
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ L K+G+ A FL S + + L G ++Y+ PE +L+
Sbjct: 63 SPLIALMQDQVETLQKNGIAATFLNSSLTAEEARSRRLSILNGEMKLLYLAPE---KLVS 119
Query: 277 P-----LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
P LQ + E G++LFAIDE HC+S+WGHDFRP+YR+L LR F I
Sbjct: 120 PASKTFLQAVQEKHGLSLFAIDEAHCISEWGHDFRPEYRQLKTLRSLFP---------KI 170
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
P++ALTATAT +VR DI+ L + + K +TSF RPNL + V+
Sbjct: 171 PMIALTATATERVRSDIIHQLTLDQ-PKVQITSFDRPNLYYEVQ 213
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 129/270 (47%), Gaps = 27/270 (10%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+ G I+Y +R+ +A L G+ A Y+A + T F + ++V+VATI
Sbjct: 230 QTGSGIVYCLSRRRVEEVAFRLKKDGISALPYHAGMSDGNRSDYQTRFLRDDVQVMVATI 289
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPS 627
AFGMGIDK ++R ++HY P++LE YYQEAGRAGRD A C+L ++ ++ +
Sbjct: 290 AFGMGIDKPDIRFVVHYDLPRNLENYYQEAGRAGRDSEPAQCLLLFGAKDIHTIEYFISQ 349
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKN 687
+ E + A + L Y T CR I + YFGE F+ C CD C++ P +++
Sbjct: 350 KEDEKSQRLARQQLRKVIDYAEGTD-CRRTIQLSYFGEHFAG-NCGNCDNCLN-PKPIED 406
Query: 688 LKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLAT 747
EA + +A E+ M I G K + KI + L+T
Sbjct: 407 WTIEAQKFLSCVARCRERFG-MSHIIDILRGSKNK-------------KIEQNGHHLLST 452
Query: 748 -------DLLWWRGLARIMENKGYIREGDD 770
+ WR LAR + ++G++ E D
Sbjct: 453 YGIGKDKTVEEWRNLARSLLHQGFLAETTD 482
>gi|239813172|ref|YP_002942082.1| ATP-dependent DNA helicase RecQ [Variovorax paradoxus S110]
gi|239799749|gb|ACS16816.1| ATP-dependent DNA helicase RecQ [Variovorax paradoxus S110]
Length = 633
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 137/227 (60%), Gaps = 19/227 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVI 219
+L + FG+S + Q++ + +A D LVL TG GKSLC+QIPA+ + V VV+
Sbjct: 21 ILHEVFGYSQFRGPQQDIVEHVVAGGDALVLMPTGGGKSLCYQIPAIARQRAGRGVSVVV 80
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETV--IRL 274
SPLI+LMHDQ L + GV A FL S + VE++ LRG +++Y PE V R
Sbjct: 81 SPLIALMHDQVGALHEAGVNAAFLNSTLDWEQTQDVERRMLRGEITLLYAAPERVNTPRF 140
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ L L E ++LFAIDE HCVS+WGHDFRP+YR L+VL E + +P +
Sbjct: 141 LSQLDSLKERGKLSLFAIDEAHCVSQWGHDFRPEYRALTVLHERYPG---------VPRI 191
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
ALTATA R DI++ L + + +FV +SF RPN+R+++ K ++
Sbjct: 192 ALTATADALTRADIVERLQLEEARQFV-SSFDRPNIRYTIVEKKDAT 237
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 110/224 (49%), Gaps = 19/224 (8%)
Query: 489 SFERTDLLNKPAER-------LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ E+ L ++ E ++Y +RK +A L G G+ A
Sbjct: 220 SFDRPNIRYTIVEKKDATTQLLRFIEREHEGDAGVVYCQSRKRVEDVAVMLKGAGINALP 279
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A L + ++ F + V+VATIAFGMGIDK +VR + H P+++E YYQE G
Sbjct: 280 YHAGLDAAVRQKHQDRFLREEGVVMVATIAFGMGIDKPDVRFVGHLDMPKNIEGYYQETG 339
Query: 602 RAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT------KQAYRMLSDCFRYGMNTSCCR 655
RAGRDG AD + L ++ RR D++ KQ R D S CR
Sbjct: 340 RAGRDGAPADAWMAYGLQD---VVNQRRMIDESPAGEEFKQVMRGKLDALLSLAEASDCR 396
Query: 656 AKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
L+ YFGE + C CD C++ PP++ + + A L+ I
Sbjct: 397 RVRLLGYFGEKST--PCGNCDNCLN-PPQVWDGTDAARKLLSTI 437
>gi|428302021|ref|YP_007140327.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 6303]
gi|428238565|gb|AFZ04355.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 6303]
Length = 724
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 133/220 (60%), Gaps = 15/220 (6%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ + LK +FG+ + + Q+E + L + D +V+ TG GKSLCFQ+PAL+ V +V+S
Sbjct: 7 LETTLKYYFGYDNFRLGQREIIEEALQNKDLMVVMPTGGGKSLCFQLPALMKKGVTIVVS 66
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLI 275
PLI+LM DQ L K+G+ A FL S +V EQ L G ++YV PE ++ R +
Sbjct: 67 PLIALMQDQVETLRKNGIAATFLNSSLNSYQVRSREQAILEGKVKLVYVAPERLVSERFL 126
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L + GIA FAIDE HCVS+WGHDFRP+YR+L LR+ + IPL A
Sbjct: 127 PFLDLVNHQVGIAGFAIDEAHCVSEWGHDFRPEYRQLITLRQRYSG---------IPLFA 177
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
LTATAT +VR DI++ L + + + + SF R NL + V+
Sbjct: 178 LTATATDRVRADIIEQLGLQEPSIHI-ASFNRQNLYYEVR 216
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 114/212 (53%), Gaps = 14/212 (6%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
AE L +++E + TIIY TRK+ + L + A AY+A L + T F
Sbjct: 224 AEVLELIRES--EASTIIYCLTRKQVDELTFKLQHDKISALAYHAGLSDEERTNNQTRFI 281
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
+ + V+VAT+AFGMGIDK +VR +IHY P+++E YYQE+GRAGRDG + C ++ +
Sbjct: 282 RDDVRVMVATVAFGMGIDKPDVRLVIHYNLPRNIEGYYQESGRAGRDGEPSRCTMFFGVG 341
Query: 620 SMPTLLPS--RRSEDQ----TKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
+ T+ S ++++ Q KQ R + D F G + CR I + YFGE F C
Sbjct: 342 DIKTIEWSINQKTDSQEQLIAKQQLRQVID-FAEGTD---CRRTIQLGYFGERFLG-NCG 396
Query: 674 LCDVCVDGPPEMKNLKEEANILMQVIAAYNEQ 705
CD C P +++ EA + +A E+
Sbjct: 397 NCDNC-RYPKPVQDWTVEAMKFLSCVARCKEK 427
>gi|258647524|ref|ZP_05734993.1| ATP-dependent DNA helicase RecQ [Prevotella tannerae ATCC 51259]
gi|260852300|gb|EEX72169.1| ATP-dependent DNA helicase RecQ [Prevotella tannerae ATCC 51259]
Length = 607
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 131/213 (61%), Gaps = 16/213 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LKK+FG+S + Q++ ++ LA D LVL TG GKS+CFQ+PALL V +V+SPLIS
Sbjct: 8 LKKYFGYSDFRPLQEDIVATTLAGIDSLVLMPTGGGKSICFQLPALLLPGVTLVVSPLIS 67
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L + G+ AC L S Q + ++ + L G ++Y+ PETV K L +L
Sbjct: 68 LMQDQVENLREAGIPACALNSNQTADEQLRLRRACLDGRVKLLYMAPETV---FKELDQL 124
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+ I+L AIDE HCVS+WGHDFRP+Y +L LR+ FG+ P MALTATA
Sbjct: 125 LAALPISLVAIDEAHCVSQWGHDFRPEYVQLGTLRKAFGSA---------PFMALTATAD 175
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
R+DI + L++ F+ +SF RPNL +V
Sbjct: 176 EVTRQDIRERLNLHSPRVFI-SSFDRPNLSLNV 207
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 105/270 (38%), Positives = 139/270 (51%), Gaps = 24/270 (8%)
Query: 478 HSPHRDRDTDRSFERTDL-LN-----KPAERLSMLQEPL-----EDGLTIIYVPTRKETL 526
HSP R SF+R +L LN AE+L + L E G I+Y +RK T
Sbjct: 189 HSP---RVFISSFDRPNLSLNVFRGLNGAEKLKAINRFLGMRAGESG--IVYCLSRKTTE 243
Query: 527 SIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH 586
+A+ L GV A Y+A L + R F ++L VVVATIAFGMGIDK NVR +IH
Sbjct: 244 QLAEKLEALGVSARPYHAGLSADKRRETQQAFIADQLRVVVATIAFGMGIDKSNVRWVIH 303
Query: 587 YGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFR 646
Y P+S+E+YYQE GRAGRDG AD +L+ N + + L R E ++ D R
Sbjct: 304 YNLPKSIESYYQEIGRAGRDGDPADTLLFYNYADIVQLEKFAR-ESHLREINLERLDRMR 362
Query: 647 YGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQS 706
++ CR +IL+ YFGE S C CDVC PPE + EA + + I E+
Sbjct: 363 EYAESNVCRRRILLNYFGE-VSAADCGNCDVC-KSPPERFDGTREAQMALSAIVRSGERI 420
Query: 707 NS---MDDDDGIYSGIKKQKFMDRPNLKMF 733
+ +D +YS K+ DR LK F
Sbjct: 421 SMPVVVDILRAVYSPAVKEGGYDR--LKTF 448
>gi|307183296|gb|EFN70165.1| Bloom syndrome protein-like protein [Camponotus floridanus]
Length = 1313
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 129/219 (58%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ ++ FG + + Q +A++A L DC VL TG GKSLC+Q+PALL+ + +VISPL
Sbjct: 625 IFRQRFGLYTFRPNQLQAINATLLGFDCFVLMPTGGGKSLCYQLPALLSVGLTIVISPLK 684
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ-----KALRGMYSIIYVCPETV---IRLI 275
SL+ DQ KL+ + A L S DN+ E + I+YV PE + +L
Sbjct: 685 SLILDQVQKLTSLDIPAAHLSSSITDNQAEAVYRELAKKEPILKILYVTPEKISASTKLC 744
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L L E +A F IDE HCVS+WGHDFRPDY+RL LR+N+ +P MA
Sbjct: 745 NTLTILYERELLARFVIDEAHCVSQWGHDFRPDYKRLKCLRDNYPK---------VPTMA 795
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATAT +VR DIL L M+ K+ ++ F RPNLR+S+
Sbjct: 796 LTATATPRVRTDILHQLGMT-NPKWFMSGFNRPNLRYSI 833
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 119/221 (53%), Gaps = 18/221 (8%)
Query: 501 ERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE 560
E ++M+ + I+Y +RK+ A + G+KA +Y+A L +Q +
Sbjct: 844 EVIAMIMTKYRNTCGIVYCLSRKDCDDYAAQMKKNGIKALSYHAGLTDNQRSNCQGRWIA 903
Query: 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
+++ V+ ATIAFGMGIDK NVR +IH P+S+E YYQE+GRAGRDG +ADC+L+ + +
Sbjct: 904 DEIHVICATIAFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAGRDGEIADCILFYHYAD 963
Query: 621 MPTLLPSRRSEDQTKQA--------YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC 672
M + ++Q+ Q ++M++ C NT+ CR + + YFGE F ++C
Sbjct: 964 MHRIRKMIELDNQSPQVIGTHMDNLFKMVAFC----ENTTDCRRSLQLNYFGEIFDRQQC 1019
Query: 673 -----QLCDVC-VDGPPEMKNLKEEANILMQVIAAYNEQSN 707
CD C M ++ E+A +M+ + N + N
Sbjct: 1020 ISNKTTACDNCRCKEEITMLDVTEDAKEIMKAVRDINNKKN 1060
>gi|224540740|ref|ZP_03681279.1| hypothetical protein BACCELL_05654 [Bacteroides cellulosilyticus
DSM 14838]
gi|224517639|gb|EEF86744.1| hypothetical protein BACCELL_05654 [Bacteroides cellulosilyticus
DSM 14838]
Length = 602
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 132/217 (60%), Gaps = 20/217 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK++FG+ S + Q+E + LA D LVL TG GKS+C+Q+PALL VV+SPLIS
Sbjct: 5 LKRYFGYDSFRPLQEEIIRTLLAGKDSLVLMPTGGGKSICYQLPALLCEGTAVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVIRLIKPLQ 279
LM DQ L +GV A L S +++ E ALR G ++Y+ PE +LI
Sbjct: 65 LMKDQVESLCANGVAAGALNSS--NDETENAALRRSCMEGKLKLLYISPE---KLIAEAN 119
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L I+LFAIDE HC+S+WGHDFRP+Y ++ +RE F +IP++ALTAT
Sbjct: 120 YLLRDMHISLFAIDEAHCISQWGHDFRPEYAQMGFIREMFP---------NIPVIALTAT 170
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
A REDI++ LH+++ F+ +SF RPNL +VK
Sbjct: 171 ADKITREDIVRQLHLNQPKVFI-SSFDRPNLSLTVKR 206
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 98/167 (58%), Gaps = 2/167 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ A Y+A L ++ +F +++++V ATIAFGMG
Sbjct: 230 IIYCMSRSKTETVAQMLQKQGLRVAVYHAGLSSARRDEAQDDFINDRVQIVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L+ + L Q
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSLADLILLTKFATESGQQG 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
L +Y CR +IL+ YFGE + E C CDVC + P
Sbjct: 350 INLEKLQRMQQYA-EADVCRRRILLSYFGEA-TTEDCGNCDVCKNPP 394
>gi|354566185|ref|ZP_08985358.1| ATP-dependent DNA helicase RecQ [Fischerella sp. JSC-11]
gi|353546693|gb|EHC16141.1| ATP-dependent DNA helicase RecQ [Fischerella sp. JSC-11]
Length = 719
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 135/224 (60%), Gaps = 15/224 (6%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK HFG+ + + Q+E + L++ D L++ TG GKSLCFQ+PAL+ + VV+SPLI+
Sbjct: 11 LKYHFGYDNFRPGQREIVEDALSNRDLLIIMPTGGGKSLCFQLPALIKKGLTVVVSPLIA 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L K+GV A FL S + EQ L+G ++YV PE ++ R + L
Sbjct: 71 LMQDQVEALRKNGVAATFLNSSLNSYQTRSREQYILQGKVKLLYVAPERLVSDRFLPFLD 130
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ GI+ FAIDE HCVS+WGHDFRP+YR+L +LR+ + D+P A TAT
Sbjct: 131 LIHHQVGISAFAIDEAHCVSEWGHDFRPEYRQLILLRKRYA---------DVPTWAFTAT 181
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
AT +VR DI++ L + + + SF R NL + V+ K ++ A
Sbjct: 182 ATDRVRNDIIQQLGLQNPSIHI-ASFNRQNLYYEVRPKKKNAYA 224
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 144/296 (48%), Gaps = 29/296 (9%)
Query: 489 SFERTDLL--------NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAA 540
SF R +L N AE L ++++ +G IIY TRK+ I L V A
Sbjct: 205 SFNRQNLYYEVRPKKKNAYAELLELIRD--SEGSGIIYCLTRKKVDEITFKLQHDQVSAL 262
Query: 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A L + + T F + + V+VATIAFGMGI+K +VR +IH+ P++LE+YYQE+
Sbjct: 263 PYHAGLTDEERTQNQTRFIRDDVRVMVATIAFGMGINKPDVRFVIHFDIPRNLESYYQES 322
Query: 601 GRAGRDGHLADCVLYANLSSMPTL--LPSRRSEDQ----TKQAYRMLSDCFRYGMNTSCC 654
GRAGRDG + C L+ + + + + L +++SE Q KQ R + D Y T C
Sbjct: 323 GRAGRDGEASRCTLFFSYADVKIIEFLINQKSEPQEQLIAKQQLRQMID---YAEGTD-C 378
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDG 714
R I + YFGE F C CD C P +++ EA + +A E+ M
Sbjct: 379 RRTIQLSYFGERFLG-NCDNCDNC-RYPKPVQDWTVEAMKFLSCVARCKEKFG-MGHIID 435
Query: 715 IYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
+ G K QK + K+ I + + WR L R + ++G I + D
Sbjct: 436 VLRGAKTQKIAQYEHDKLSTYGIGKDK------SVEEWRMLGRSLLHQGLIEQSTD 485
>gi|119899607|ref|YP_934820.1| ATP-dependent DNA helicase [Azoarcus sp. BH72]
gi|119672020|emb|CAL95934.1| ATP-dependent DNA helicase [Azoarcus sp. BH72]
Length = 615
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 134/218 (61%), Gaps = 15/218 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ +L+ FG+++ + Q+ + A D LVL TG GKSLC+Q+PALL +V+SP
Sbjct: 17 HHVLEHVFGYTAFRGEQQAIVEHVAAGGDALVLMPTGGGKSLCYQVPALLREGTAIVVSP 76
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVI--RLIK 276
LI+LMHDQ S L + GV A FL S + +VE+ G ++YV PE ++ R +
Sbjct: 77 LIALMHDQVSALVEAGVKAAFLNSSLDAEEARRVERALYAGELDLLYVAPERLMTPRFLD 136
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L L ++ +ALFAIDE HCVS+WGHDFRP+Y +LS+L E + A IP +AL
Sbjct: 137 QLDHLRDTHRLALFAIDEAHCVSQWGHDFRPEYLQLSILPERYPA---------IPRIAL 187
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TATA Q RE+I L + +F+ +SF RPN+R+++
Sbjct: 188 TATADRQTREEIATRLRLEDARRFI-SSFDRPNIRYTI 224
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 116/247 (46%), Gaps = 10/247 (4%)
Query: 487 DRSFERTDLLNKPAER---LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYN 543
DR R +++K R L ++E ++Y +R++ A +L G+ A Y+
Sbjct: 216 DRPNIRYTIVDKDDPRRQLLHFIREEFPSEAGVVYCLSRRKVEETAAWLQEQGINALPYH 275
Query: 544 ASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRA 603
A L + T F V+VATIAFGMGIDK +VR + H P+S+E YYQE GRA
Sbjct: 276 AGLGQDVRAEHQTRFLREDGIVMVATIAFGMGIDKPDVRFVAHLDLPRSIEGYYQETGRA 335
Query: 604 GRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILV 660
GRDG A + ++ ++ + + K+ R D + + CR + L+
Sbjct: 336 GRDGLPAQAWMAWGAQDVVQQRRMIDESEASEDFKRLARNRLDVLVGLVEATTCRRQHLL 395
Query: 661 EYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIK 720
YFGE+ C CD C+ PP+ + E A + + ++ + D + G +
Sbjct: 396 AYFGEESG--PCGNCDNCLS-PPQTWDATEAARKALSCVYRTGQRYGTGHLID-VLRGER 451
Query: 721 KQKFMDR 727
+K ++R
Sbjct: 452 TEKVLER 458
>gi|148236484|ref|NP_001079095.1| Bloom syndrome protein homolog [Xenopus laevis]
gi|17366056|sp|Q9DEY9.1|BLM_XENLA RecName: Full=Bloom syndrome protein homolog; Short=xBLM; AltName:
Full=RecQ helicase homolog
gi|11120568|gb|AAG30928.1|AF307841_1 Bloom's syndrome-like protein [Xenopus laevis]
Length = 1364
Score = 176 bits (446), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 159/302 (52%), Gaps = 46/302 (15%)
Query: 84 MRQASLLDHFQSGNRQKRGKRNVGDDVS---VSGSVVSPSIVEEQKESYPGMDCNLKAES 140
+R+A L S N++K + N GD + +S S++ P I E + G +
Sbjct: 552 IREAQL----DSRNKEKNTRNNTGDTTNPSLLSDSLLKPQIENPAHERFRGFNF------ 601
Query: 141 DSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSG 200
P E+ + K FG + Q EA++A L DC +L TG G
Sbjct: 602 -------PHSKEMMK--------IFHKKFGLHRFRTNQLEAINACLCGEDCFILMPTGGG 646
Query: 201 KSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-- 258
KSLC+Q+P ++ V +VISPL SL+ DQ KL+ + A +L + D + L+
Sbjct: 647 KSLCYQLPGCISPGVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDAEAASIYLQLS 706
Query: 259 ---GMYSIIYVCPETV---IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312
+ ++YV PE V RLI ++ L E + +A F IDE HCVS+WGHDFRPDY+RL
Sbjct: 707 KKDPIIKLLYVTPEKVCASTRLISTMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRL 766
Query: 313 SVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRF 372
+VLR+ F + +P+MALTATA +V++DIL L M+K F + SF R NL++
Sbjct: 767 NVLRQKFQS---------VPMMALTATANPRVKKDILNQLKMTKPQIFTM-SFNRDNLKY 816
Query: 373 SV 374
V
Sbjct: 817 EV 818
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 97/176 (55%), Gaps = 12/176 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVVATIAFGM 574
IIY +R E ++A L G+ A AY+A L S V H +++ +V+ ATIAFGM
Sbjct: 844 IIYCLSRHECDTMADTLQKEGLAALAYHAGLADSNRDYVQHKWINQDDCQVICATIAFGM 903
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRR-S 630
GIDK +VR +IH P+S+E YYQE+GRAGRDG + C+L Y +++ + L+ +
Sbjct: 904 GIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSHCLLFYSYHDVTRIRRLIQMEKDG 963
Query: 631 EDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGE-----DFSHEKCQL-CDVCV 679
TKQ + L Y N CR L+ YFGE +F E Q+ CD C+
Sbjct: 964 NSHTKQTHFNNLYSMVHYCENVVECRRMQLLSYFGENNFNPNFCKEHTQVACDNCL 1019
>gi|134095872|ref|YP_001100947.1| ATP-dependent DNA helicase [Herminiimonas arsenicoxydans]
gi|133739775|emb|CAL62826.1| ATP-dependent DNA helicase RecQ [Herminiimonas arsenicoxydans]
Length = 608
Score = 176 bits (446), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 131/215 (60%), Gaps = 17/215 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG+SS + Q E + D LVL TG GKSLC+QIP+LL V VVISPLI
Sbjct: 15 VLESVFGYSSFRGEQAEIVDLVTRGGDALVLMPTGGGKSLCYQIPSLLRDGVGVVISPLI 74
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKP-LQ 279
+LM DQ L++ GV A FL S Q +++E++ G ++YV PE RL+ P
Sbjct: 75 ALMQDQVDALAEVGVRAAFLNSTQTFEESSRIERRLRSGDLDLVYVAPE---RLMTPRCL 131
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L E+ IALFAIDE HCVS+WGHDFRP+Y RLS+L E F ++P +ALTAT
Sbjct: 132 DLLEASKIALFAIDEAHCVSQWGHDFRPEYIRLSILHERFP---------NVPRIALTAT 182
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
A Q RE+I L + FV +SF RPN+R+ +
Sbjct: 183 ADHQTREEIAHRLQLDNARMFV-SSFDRPNIRYQI 216
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 102/200 (51%), Gaps = 12/200 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+ A++L G+ A Y+A + + + F + V+VATIAFGMG
Sbjct: 240 IVYCLSRKKVEETAEFLRENGISALPYHAGMDFATRSKNQARFLREESIVMVATIAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR + H P+S+E YYQE GRAGRDG A+ + L ++ RR D+++
Sbjct: 300 IDKPDVRFVAHLDLPKSIEGYYQETGRAGRDGAAANAWMAYGLQD---VVQQRRMIDESE 356
Query: 636 --QAYRMLSDCFRYGMNTSC----CRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLK 689
+ ++ + M C CR + L+ YFG+ S C CD C++ PP +
Sbjct: 357 ADETFKRVQGVKLDAMLGLCETLHCRRQRLLTYFGQ--SSAPCGNCDTCLN-PPRSFDAT 413
Query: 690 EEANILMQVIAAYNEQSNSM 709
L+ I +++ +M
Sbjct: 414 VAVQKLLSTIYRVDQRFGAM 433
>gi|414079433|ref|YP_007000857.1| ATP-dependent DNA helicase RecQ [Anabaena sp. 90]
gi|413972712|gb|AFW96800.1| ATP-dependent DNA helicase RecQ [Anabaena sp. 90]
Length = 729
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 145/244 (59%), Gaps = 22/244 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK HFG+ + Q++ + L + D +V+ TG GKSLCFQ+PALL + VV+SPLI+
Sbjct: 11 LKHHFGYDQFRPGQRQIIEDALENRDLMVVMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L + ++A FL S KV E+ + G ++YV PE ++ R + L
Sbjct: 71 LMQDQVEALRTNNISATFLNSSLNAYKVRSREEAIMNGKIKLLYVAPERLVSERFLPLLD 130
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ E GI+ FAIDE HCVS+WGHDFRP+YR+L +LR+ + D+P +ALTAT
Sbjct: 131 VVKEKVGISTFAIDEAHCVSEWGHDFRPEYRQLRLLRKRYP---------DVPTIALTAT 181
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKK 399
AT +VR DI++ L + K + SF R NL + V+ S+RA + +L++I +
Sbjct: 182 ATDRVRADIIEQLGL-KQPSIHIASFNRQNLHYEVRSK--SNRA-----YAELLEIVREN 233
Query: 400 KKTG 403
+ +G
Sbjct: 234 EGSG 237
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 136/279 (48%), Gaps = 25/279 (8%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
AE L +++E +G IIY TRK+ I L V Y+A L + + T F
Sbjct: 224 AELLEIVRE--NEGSGIIYCLTRKKVDEITLKLQNDKVSVLPYHAGLSDEERSKNQTRFI 281
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
+ + V+VAT+AFGMGI+K +VR ++H P++LE+YYQE+GRAGRD + C L+ N
Sbjct: 282 RDDVRVMVATVAFGMGINKPDVRFVVHSDLPRNLESYYQESGRAGRDDEPSKCTLFFNYG 341
Query: 620 SMPTL------LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
+ T+ P + + KQ R + D Y T CR I + YFGE F C
Sbjct: 342 DIKTIEWSINQKPDPQEQLIAKQQLRQVID---YAEGTD-CRRTIQLSYFGERFPG-NCG 396
Query: 674 LCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMF 733
CD C+ P +++ EA + +A E+ + D I G K Q+ +
Sbjct: 397 NCDNCL-YPKPVQDWTIEAMKFLSCVARCKERYGMLHIID-ILRGAKNQRIV-------- 446
Query: 734 VSKIREQSQKYLATD--LLWWRGLARIMENKGYIREGDD 770
V+K + S + D + WR L R + ++G I + D
Sbjct: 447 VNKHDQLSTYGIGKDKTVDEWRMLGRSLLHQGLIEQTAD 485
>gi|337277744|ref|YP_004617215.1| ATP-dependent DNA helicase [Ramlibacter tataouinensis TTB310]
gi|334728820|gb|AEG91196.1| Candidate ATP-dependent DNA helicase [Ramlibacter tataouinensis
TTB310]
Length = 621
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 133/225 (59%), Gaps = 19/225 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVV 218
S+L++ FG+ + Q + +A D LVL TG GKSLC+Q+PA+ + + VV
Sbjct: 6 SILREVFGYEQFRGPQAAIVEHVIAGGDALVLMPTGGGKSLCYQVPAIARQRAGHGITVV 65
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVI--R 273
+SPLI+LMHDQ L + GV A FL S G+ VE++ LRG +++Y PE V R
Sbjct: 66 VSPLIALMHDQVGALHEAGVEAAFLNSTLSGEEAAGVEKRLLRGEVTLLYAAPERVTTPR 125
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
+ L L + +ALFAIDE HCVS+WGHDFRP+YR L+VL E F +P
Sbjct: 126 FLAQLDSLHQRGQLALFAIDEAHCVSQWGHDFRPEYRALTVLHERFAG---------VPR 176
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
+ALTATA R DI++ L + +FV +SF RPN+ +++ K
Sbjct: 177 IALTATADALTRADIVERLQLEDAREFV-SSFDRPNISYTIVEKK 220
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 96/198 (48%), Gaps = 12/198 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK A+ L G G+ A Y+A L +R F V+VATIAFGMG
Sbjct: 240 IVYCQSRKRVEETAQTLSGQGLTALPYHAGLDTEVRQRHQDRFLREDGIVMVATIAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT- 634
IDK +VR + H P+++E YYQE GRAGRDG A + L ++ RR D++
Sbjct: 300 IDKPDVRFVAHLDMPKNIEGYYQETGRAGRDGLPAAAWMAYGLQD---VVNQRRMIDESP 356
Query: 635 -----KQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLK 689
KQ R D + CR L+ YFGED C CD CV PP++ +
Sbjct: 357 AGEDFKQVMRGKLDALLALAEATDCRRVRLLGYFGED--SRPCGNCDNCVS-PPQVWDGT 413
Query: 690 EEANILMQVIAAYNEQSN 707
+ A L+ I + S
Sbjct: 414 DAARKLLSTIYRVQQASG 431
>gi|390333039|ref|XP_001184484.2| PREDICTED: uncharacterized protein LOC754123 [Strongylocentrotus
purpuratus]
Length = 1976
Score = 176 bits (445), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 134/223 (60%), Gaps = 18/223 (8%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVV 216
E K + LKK FGH+S + Q + + + L + D V+ ATG GKSLC+Q P++ TG V
Sbjct: 965 EKKYINALKKSFGHASFRPMQWKIIHSILKNRRDQCVVMATGYGKSLCYQFPSVFTGGVS 1024
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPD-NKVEQKALRGMYSIIYVCPETV---I 272
+VISPLISLM DQ L + AC+LGS Q D + + L+G Y ++Y+ PE +
Sbjct: 1025 IVISPLISLMEDQVQALRIANIKACYLGSAQKDMAQARRNLLKGEYRLVYMTPEFISVAT 1084
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
LI+ +QR GI L AIDE HCVS+WGHDFR YR L NL+ L ++P
Sbjct: 1085 DLIEDVQRKV---GITLVAIDEAHCVSQWGHDFRSAYRTLG---------NLRQLLPEVP 1132
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+ALTATAT V++DI +SLH+ K TSF RPNL V+
Sbjct: 1133 FLALTATATPMVQKDICRSLHL-KNPDVTCTSFDRPNLYLQVQ 1174
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 95/155 (61%), Gaps = 4/155 (2%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
DG TIIY PT+K T S+ L GVKA Y+A + + + H +F ++L+ +VAT+A
Sbjct: 1199 DGPTIIYCPTKKATESVGSTLKNLGVKADIYHAGMNPERRKENHHKFVRDELQCIVATVA 1258
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSR 628
FGMGIDK +VR +IHYG P+ +E+YYQE GRAGRDG ++C + A+ +
Sbjct: 1259 FGMGIDKPDVRNVIHYGAPKDIESYYQEIGRAGRDGMPSNCFAFYSRADFVLNWHFVREI 1318
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYF 663
+SE+ + +M+ Y + TS CR K+++ +F
Sbjct: 1319 KSEEFQEHKAKMIKKIEDY-VQTSQCRRKLILSHF 1352
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 94/155 (60%), Gaps = 4/155 (2%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
DG TIIY PT+K T S+ L GVKA Y+A + + + H +F ++L+ +VAT+A
Sbjct: 647 DGPTIIYCPTKKATESVGSTLKNLGVKADIYHAGMNPERRKENHHKFVRDELQCIVATVA 706
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSR 628
FGMGIDK +VR +IHYG P+ +E+YYQE GRAGRDG ++C + A+ +
Sbjct: 707 FGMGIDKPDVRNVIHYGAPKDIESYYQEIGRAGRDGMPSNCFAFYSRADFVLNWHFVREI 766
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYF 663
+S + + +M+ Y + TS CR K+++ +F
Sbjct: 767 KSVEFQEHKAKMIKKIEDY-VQTSQCRRKLILSHF 800
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 86/181 (47%), Gaps = 35/181 (19%)
Query: 197 TGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKA 256
+G GKSLC+Q P++ TG V ++ISPLISLM DQ L + AC+LGS Q D ++
Sbjct: 475 SGYGKSLCYQFPSVFTGGVSIIISPLISLMEDQVQALRIANIKACYLGSAQKDMAQARR- 533
Query: 257 LRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLR 316
L+KP L V +D D + +
Sbjct: 534 ----------------NLLKPNLYLQ---------------VQLKTNDVENDLANILIET 562
Query: 317 ENFGANNLKSL--KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+N SL + ++P +ALTATAT V++DI +SLH+ K TSF RPNL V
Sbjct: 563 QNAHYTVTLSLTAQDEVPFLALTATATPMVQKDICRSLHL-KNPDVTCTSFDRPNLYLQV 621
Query: 375 K 375
+
Sbjct: 622 Q 622
>gi|82915187|ref|XP_728999.1| ATP-dependent DNA helicase RecQ [Plasmodium yoelii yoelii 17XNL]
gi|23485762|gb|EAA20564.1| ATP-dependent DNA helicase recQ-related [Plasmodium yoelii yoelii]
Length = 1329
Score = 176 bits (445), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 132/205 (64%), Gaps = 16/205 (7%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---T 212
+ VK+ KK+FG+ +LK+FQ EA+ A D ++ ATG GKSLC+QIP+++
Sbjct: 31 EMRVKMEEAQKKYFGYKNLKHFQIEAVHAVFHKKDSFLVMATGMGKSLCYQIPSIMDEYK 90
Query: 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN--KVEQKALRGMYSIIYVCPET 270
K+ +VISPLISLM DQ L++ +++ FLGSGQ N K+ + +G+Y+I+Y PE
Sbjct: 91 NKLTIVISPLISLMKDQVDNLNRKKISSVFLGSGQKKNNQKILSEIKQGLYNIVYCSPEY 150
Query: 271 VIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
+ K L L +++ I L AIDEVHC+S+WGHDFRP YR+L N L+++ D
Sbjct: 151 ALNN-KNLFMLLKNK-ILLVAIDEVHCMSEWGHDFRPSYRKL---------NELRTILND 199
Query: 331 IPLMALTATATIQVREDILKSLHMS 355
IP M LTAT T V+ DILK+L+ S
Sbjct: 200 IPFMCLTATCTKAVQSDILKNLNFS 224
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 96/162 (59%), Gaps = 12/162 (7%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
T+IYV ++K+ +I +L G+ Y+A L + R H F ++++++V+AT+AFGM
Sbjct: 284 TLIYVNSKKDCENIYNFLHERGLLVKMYHADLSNEEKREAHEMFLKDEIQIVIATVAFGM 343
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS----SMPTLLPSRRS 630
GIDK ++RRIIHYG+ +SLEAY Q+ GRAGRDG A+ +L+ +++ S +L +
Sbjct: 344 GIDKPDIRRIIHYGFSRSLEAYVQQVGRAGRDGGDAEAILFFHINEESKSKNLILRENVA 403
Query: 631 EDQTKQAYR-------MLSDCFRYGMNTSCCRAKILVEYFGE 665
++ ++ M + Y +T C R KI +YF E
Sbjct: 404 NHMMEKNFKRVQHIINMFTQSSDYAYSTICRRKKIY-DYFDE 444
>gi|94970568|ref|YP_592616.1| ATP-dependent DNA helicase RecQ [Candidatus Koribacter versatilis
Ellin345]
gi|94552618|gb|ABF42542.1| ATP-dependent DNA helicase, RecQ family [Candidatus Koribacter
versatilis Ellin345]
Length = 644
Score = 176 bits (445), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 137/220 (62%), Gaps = 15/220 (6%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+NS LK +FG+ + Q+ + + +A+ D V+ TG GKSLC+Q+PA ++ K VVIS
Sbjct: 9 INSALKHYFGYDRFRPLQERIIRSIVANKDVCVIMPTGGGKSLCYQLPAAISQKTTVVIS 68
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM+DQ +L++ G+ A L S P KV + A G Y ++Y+ PE ++R +
Sbjct: 69 PLIALMNDQVVQLTQMGIPAALLNSSLPYDEQKKVMRAAREGKYRLLYLSPERLVR--ED 126
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
+ + +FAIDE HC+S+WGH+FRP+YR+L +LR +F D+P+ A T
Sbjct: 127 TVGWLRTVPLGVFAIDEAHCISEWGHEFRPEYRQLKLLRNSFP---------DVPIAAFT 177
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHS 377
A+AT +VR DI+ L + + K++ SF RPNLR+ ++ +
Sbjct: 178 ASATQRVRHDIVHQLALREPDKYI-ASFHRPNLRYIIRQT 216
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 95/170 (55%), Gaps = 10/170 (5%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
I+Y PT K +A +L + A Y+ + + R ++ +++ V+V TIAFG+
Sbjct: 237 VIVYAPTIKMVEEVADFLIDKKIPAVPYHGQMDSALRTRNQEKWMTDEVRVLVGTIAFGL 296
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSE 631
GI+K VR +IH P+SLE YYQEAGRAGRDG ADCV+ +L + + +
Sbjct: 297 GINKPAVRAVIHLAVPKSLENYYQEAGRAGRDGLPADCVMLWQPKDLGLLVYFIQQMQDT 356
Query: 632 DQTKQA---YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVC 678
+ K+A Y+++S+ + + CR K + E+FGE S + C CD+C
Sbjct: 357 SEKKRAWERYQVISEFVK----SDECRHKQICEHFGEKKSFDDCVACDIC 402
>gi|399018929|ref|ZP_10721080.1| ATP-dependent DNA helicase RecQ [Herbaspirillum sp. CF444]
gi|398098859|gb|EJL89138.1| ATP-dependent DNA helicase RecQ [Herbaspirillum sp. CF444]
Length = 614
Score = 176 bits (445), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 99/227 (43%), Positives = 139/227 (61%), Gaps = 17/227 (7%)
Query: 152 EIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL 211
E+ + + + +L+ FG+SS + Q + + + D LVL TG GKSLC+QIPAL+
Sbjct: 7 ELVHEQQSRALHILETVFGYSSFRGQQGDIVRHVVQGGDALVLMPTGGGKSLCYQIPALV 66
Query: 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCP 268
V VV+SPLI+LM DQ L++ GV A FL S Q + ++E++ G ++YV P
Sbjct: 67 RDGVGVVVSPLIALMQDQVDALAEVGVRAAFLNSTQTFDEAMQIERRVRSGDLDVLYVAP 126
Query: 269 ETVIRLIKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
E RL+ P L E+ IALFAIDE HCVS+WGHDFRP+Y +LSVL E F
Sbjct: 127 E---RLMTPRCLELLEAAHIALFAIDEAHCVSQWGHDFRPEYIKLSVLHERFP------- 176
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++P +ALTATA Q RE+I+ L + +FV +SF RPN+R+ +
Sbjct: 177 --NVPRIALTATADQQTREEIIHRLQLEDARQFV-SSFDRPNIRYQI 220
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 11/204 (5%)
Query: 489 SFERTDLLNKPAER-------LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + E+ L ++ D ++Y +RK+ A++L G+ A
Sbjct: 210 SFDRPNIRYQIVEKANGRKQLLDFIESEHADDAGVVYCLSRKKVEETAEFLKQSGINALP 269
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A + ++ F V+VATIAFGMGIDK +VR + H P+S+E YYQE G
Sbjct: 270 YHAGMDYAKRTANQARFLREDKIVMVATIAFGMGIDKPDVRFVAHLDLPKSIEGYYQETG 329
Query: 602 RAGRDGHLADCVLYANLSSMPT---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG A+ + L + ++ +++ K+ + D T CR
Sbjct: 330 RAGRDGLPANAWMAYGLQDVVQQRRMIAESEADETFKRVLGIKLDAMLGLCETLHCRRVR 389
Query: 659 LVEYFGEDFSHEKCQLCDVCVDGP 682
L++YFG+ + C CD+C+ P
Sbjct: 390 LLDYFGQ-HGQQACGNCDICLSPP 412
>gi|409404383|ref|ZP_11252862.1| ATP-dependent DNA helicase [Herbaspirillum sp. GW103]
gi|386435902|gb|EIJ48725.1| ATP-dependent DNA helicase [Herbaspirillum sp. GW103]
Length = 617
Score = 176 bits (445), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 136/225 (60%), Gaps = 17/225 (7%)
Query: 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTG 213
G+ + + +L+ FG+SS + Q E + D LVL TG GKSLC+Q+PALL
Sbjct: 10 GATQQERALHVLETVFGYSSFRGHQGEIVQHVAGGGDALVLMPTGGGKSLCYQVPALLRA 69
Query: 214 KVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPET 270
VV+SPLI+LM DQ L++ GV A FL S Q + ++E++ +G ++YV PE
Sbjct: 70 GTGVVVSPLIALMQDQVDALAEVGVRAAFLNSTQSFDEALQIERRLRQGDLDLLYVAPE- 128
Query: 271 VIRLIKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKF 329
RL+ P L ES I+LFAIDE HCVS+WGHDFRP+Y +LS+L E F
Sbjct: 129 --RLMTPRCLELLESARISLFAIDEAHCVSQWGHDFRPEYIKLSILHERFP--------- 177
Query: 330 DIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P +ALTATA Q RE+I+ L + +FV +SF RPN+R+ +
Sbjct: 178 QVPRIALTATADQQTREEIIHRLQLEDARQFV-SSFDRPNIRYQI 221
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 111/228 (48%), Gaps = 28/228 (12%)
Query: 489 SFERTDLLNKPAER-------LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + E+ L ++ D I+Y +RK+ A++L G G+ A A
Sbjct: 211 SFDRPNIRYQIVEKANGRKQLLDFIKSEHPDDAGIVYCLSRKKVEETAEFLRGEGLNALA 270
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A + + R F V+VATIAFGMGIDK +VR + H P+S+E YYQE G
Sbjct: 271 YHAGMDYALRTRNQARFLREDKIVMVATIAFGMGIDKPDVRFVCHLDLPKSVEGYYQETG 330
Query: 602 RAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK--QAYR---------MLSDCFRYGMN 650
RAGRDG AD + L + + RR D+++ + ++ MLS C
Sbjct: 331 RAGRDGLPADAWMAYGLQDV---VQQRRMIDESEADETFKRVLGTKLDAMLSLC-----E 382
Query: 651 TSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQV 698
T CR L++YFGE S C CD C+ P E +L V
Sbjct: 383 TLHCRRVHLLDYFGEPSS--PCGNCDTCLTPPVSFDATVEVQKLLSTV 428
>gi|389873105|ref|YP_006380524.1| ATP-dependent DNA helicase [Advenella kashmirensis WT001]
gi|388538354|gb|AFK63542.1| ATP-dependent DNA helicase [Advenella kashmirensis WT001]
Length = 609
Score = 175 bits (444), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 129/215 (60%), Gaps = 15/215 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK+ FG+ S + Q+ + +A HD LVL TG+GKSLC+Q+PAL+ +V+SPL
Sbjct: 9 SVLKRVFGYDSFRGEQQAIVEHLVAGHDALVLMPTGAGKSLCYQVPALIRPGTAIVVSPL 68
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQ---PDNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
I+LM DQ L + G A FL S Q +VE RG +YV PE + L
Sbjct: 69 IALMQDQVDALRELGARAAFLNSSQEWETIREVENAFARGELDFLYVAPERL--LTDRCM 126
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
RL E IALFAIDE HCVS+WGHDFRP+Y LS L+E + D+P +ALTAT
Sbjct: 127 RLLERGRIALFAIDEAHCVSQWGHDFRPEYLGLSRLQEQWP---------DVPRIALTAT 177
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
AT Q R++I + L +++ FV F RPN+R+ +
Sbjct: 178 ATPQTRDEIAQRLGLTQARHFV-AGFDRPNIRYVI 211
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 97/196 (49%), Gaps = 11/196 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R +T A++LC G+ A AY+A LP + F + V+VATIAFGMG
Sbjct: 235 IVYCLSRNKTEDTAEFLCREGIDAMAYHAGLPAELRAQRQARFLRDDGVVMVATIAFGMG 294
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K +VR + H P+S+E YYQE GRAGRDG A + L ++ R+ D +
Sbjct: 295 INKPDVRFVAHIDLPKSVEGYYQETGRAGRDGLPATAWMAYGLQD---VVQQRKMIDDST 351
Query: 636 --QAYRMLSDCFRYGMNTSC----CRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLK 689
+ ++ S GM C CR L+ YFG+ E C CDVC+ P
Sbjct: 352 GDEFFKRRSGAQLDGMLALCETVQCRRTRLLAYFGQ--QSEPCGNCDVCLTPPQTWDGTV 409
Query: 690 EEANILMQVIAAYNEQ 705
IL + + E+
Sbjct: 410 AAQKILSAIYRLHRER 425
>gi|291614340|ref|YP_003524497.1| ATP-dependent DNA helicase RecQ [Sideroxydans lithotrophicus ES-1]
gi|291584452|gb|ADE12110.1| ATP-dependent DNA helicase RecQ [Sideroxydans lithotrophicus ES-1]
Length = 614
Score = 175 bits (444), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 135/218 (61%), Gaps = 15/218 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+L+ FG++S + Q+ + +A D LVL TG GKSLC+QIPAL+ V +++SP
Sbjct: 7 QQILRDTFGYASFRGAQQAIVEHVVAGGDALVLMPTGGGKSLCYQIPALMRKGVGIIVSP 66
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIR--LIK 276
LI+LM DQ L + GV+A FL S + +V ++ +R ++YV PE ++ +
Sbjct: 67 LIALMQDQVDALKQLGVSAAFLNSSLEAEEAREVSRQLMRCELKLLYVAPERLLTEGFLN 126
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L+RL + IALFAIDE HCVS+WGHDFRP+YR L+VL E F + +P +AL
Sbjct: 127 LLERLNQDNNIALFAIDEAHCVSQWGHDFRPEYRGLTVLHERFPS---------VPRIAL 177
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TATA R ++++ L + + +FV +SF RPN+R+ V
Sbjct: 178 TATADAPTRSEVVERLSLEQAEQFV-SSFDRPNIRYRV 214
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 95/181 (52%), Gaps = 8/181 (4%)
Query: 506 LQEPLE----DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHEN 561
LQ+ LE D I+Y +RK+ A +L G A Y+A L + + +F
Sbjct: 224 LQDFLETEHPDDAGIVYCLSRKKVEETAAWLKEQGWDALPYHAGLDAAVRSKNQKKFLRE 283
Query: 562 KLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS-- 619
+ ++VAT+AFGMGIDK NVR + H P+S+E YYQE GRAGRDG A+ + L
Sbjct: 284 EGVIMVATVAFGMGIDKPNVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGDV 343
Query: 620 -SMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVC 678
SM +L S + ++ K+ D ++ CR + ++ YFGE+ + C CD C
Sbjct: 344 VSMRQMLLSGDAPEERKRVELQKLDALLGFCESTACRHQTILRYFGEEHPGD-CNECDNC 402
Query: 679 V 679
+
Sbjct: 403 L 403
>gi|126208588|ref|YP_001053813.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|303250135|ref|ZP_07336337.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307246031|ref|ZP_07528113.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307250372|ref|ZP_07532320.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307252754|ref|ZP_07534645.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307255013|ref|ZP_07536831.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307257169|ref|ZP_07538941.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307259449|ref|ZP_07541174.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|307261598|ref|ZP_07543266.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|126097380|gb|ABN74208.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|302651198|gb|EFL81352.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306852966|gb|EFM85189.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306857582|gb|EFM89690.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306859786|gb|EFM91808.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306861886|gb|EFM93862.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306864331|gb|EFM96242.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306866385|gb|EFM98248.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306868721|gb|EFN00530.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 602
Score = 175 bits (444), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 130/215 (60%), Gaps = 15/215 (6%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ S ++ Q+E + + LA DCLV+ TG GKSLC+Q+PAL + +VISPLI
Sbjct: 11 VLNNVFGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLI 70
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +G+ A FL S Q VEQKAL G ++Y+ PE V + +
Sbjct: 71 SLMKDQVDQLLTNGIEAGFLNSTQTFEEQQLVEQKALSGQLKLLYLSPEKV--MTQGFFH 128
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
I+L A+DE HCVS+WGHDFRP+Y L LR+ F ++PLMALTATA
Sbjct: 129 FISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRDTFP---------NVPLMALTATA 179
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
R DIL+ L ++ + L SF RPN+R++V+
Sbjct: 180 DPTTRHDILQHLRLTDPHTY-LGSFDRPNIRYTVQ 213
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 137/275 (49%), Gaps = 17/275 (6%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + I+Y +RK+ I + L + Y+A + Q V
Sbjct: 217 KPVEQLAKFISKQQGKSGIVYCNSRKKVEEITEKLASRKISVMGYHAGMSVQQRETVQNA 276
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F + ++VVVATIAFGMGI+K NVR ++H+ P+S+E+YYQE GRAGRD ++ VL+ +
Sbjct: 277 FQRDNIQVVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYD 336
Query: 618 LSSMP----TLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
+ LL SE + + +++ + CR +L+ YFGE E C+
Sbjct: 337 PADYAWLQKVLLEEPESEQRDIKQHKL--QAIGAFAESQTCRRLVLLNYFGES-RQEPCK 393
Query: 674 LCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMF 733
CD+C+D PP + +A +M VI Q+ G+ G+ QK + ++
Sbjct: 394 NCDICLD-PPRKYDGTLDAQKVMSVIYRTG-QTFGAHHVIGVLRGLNNQKIRQFNHDQLS 451
Query: 734 VSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
V I +EQSQ Y W + R + + G IR+
Sbjct: 452 VYGIGKEQSQDY-------WLSIIRQLIHLGLIRQ 479
>gi|165976542|ref|YP_001652135.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|165876643|gb|ABY69691.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
Length = 602
Score = 175 bits (443), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 130/215 (60%), Gaps = 15/215 (6%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ S ++ Q+E + + LA DCLV+ TG GKSLC+Q+PAL + +VISPLI
Sbjct: 11 VLNNVFGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLI 70
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +G+ A FL S Q VEQKAL G ++Y+ PE V + +
Sbjct: 71 SLMKDQVDQLLTNGIEAGFLNSTQTFEEQQLVEQKALSGQLKLLYLSPEKV--MTQGFFH 128
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
I+L A+DE HCVS+WGHDFRP+Y L LR+ F ++PLMALTATA
Sbjct: 129 FISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRDTFP---------NVPLMALTATA 179
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
R DIL+ L ++ + L SF RPN+R++V+
Sbjct: 180 DPTTRHDILQHLRLTDPHTY-LGSFDRPNIRYTVQ 213
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 137/275 (49%), Gaps = 17/275 (6%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + I+Y +RK+ I + L + Y+A + Q V
Sbjct: 217 KPVEQLAKFISKQQGKSGIVYCNSRKKVEEITEKLASRKISVMGYHAGMSVQQRETVQNA 276
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F + ++VVVATIAFGMGI+K NVR ++H+ P+S+E+YYQE GRAGRD ++ VL+ +
Sbjct: 277 FQRDNIQVVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYD 336
Query: 618 LSSMP----TLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
+ LL SE + + +++ + CR +L+ YFGE E C+
Sbjct: 337 PADYAWLQKVLLEEPESEQRDIKQHKL--QAIGAFAESQTCRRLVLLNYFGES-RQEPCK 393
Query: 674 LCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMF 733
CD+C+D PP + +A +M VI Q+ G+ G+ QK + ++
Sbjct: 394 NCDICLD-PPRKYDGTLDAQKVMSVIYRTG-QTFGAHHVIGVLRGLNNQKIRQFNHDQLS 451
Query: 734 VSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
V I +EQSQ Y W + R + + G IR+
Sbjct: 452 VYGIGKEQSQDY-------WLSIIRQLIHLGLIRQ 479
>gi|260221542|emb|CBA30210.1| ATP-dependent DNA helicase recQ [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 615
Score = 175 bits (443), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 135/227 (59%), Gaps = 19/227 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV----VVVI 219
+L FG+ + + Q+ + +A D LVL TG GKSLC+Q+PA+ + +VI
Sbjct: 6 ILHDVFGYQAFRGPQQAIVEHVIAGGDALVLMPTGGGKSLCYQVPAIARQQAGLGATLVI 65
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETV--IRL 274
SPLI+LMHDQ L + GV+A FL S + ++EQ+ LRG +++Y PE V R
Sbjct: 66 SPLIALMHDQVGALHEAGVSAAFLNSTLTSDEAYQIEQQLLRGEITLLYAAPERVSNARF 125
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ L L E ++LFAIDE HCVS+WGHDFRPDYR L+VL E + +P +
Sbjct: 126 LALLDSLFERGKLSLFAIDEAHCVSQWGHDFRPDYRNLTVLHERYPG---------VPRI 176
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
ALTATA R DIL+ L + + FV +SF RPN+R+++ K S+
Sbjct: 177 ALTATADDLTRADILERLQLEEARAFV-SSFDRPNIRYTIVEKKDST 222
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 15/230 (6%)
Query: 489 SFERTDLLNKPAER-------LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ E+ L ++ E I+Y +RK+ +A+ L G+KA
Sbjct: 205 SFDRPNIRYTIVEKKDSTTQLLRFIEREHEGEAGIVYCQSRKKVEDMAQTLVDAGIKALP 264
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A L S++R+++ + F + V+VATIAFGMGIDK +VR + H P+++E YYQE
Sbjct: 265 YHAGL-DSKVRQLNQDRFLREEGIVMVATIAFGMGIDKPDVRFVAHRDMPKNIEGYYQET 323
Query: 601 GRAGRDGHLADCVLYANLSSMPT---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD + L + ++ + ++ KQ R D + CR
Sbjct: 324 GRAGRDGLPADAWMAYGLQDVVNQRRMIDESPASEEFKQVMRGKLDALLGLAEATDCRRV 383
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSN 707
L+ YFGE + C CD C++ PPE+ + + A L+ I + S
Sbjct: 384 RLLGYFGE--KSQPCGNCDNCLN-PPEVWDGTDAARKLLSTIYRIQQMSG 430
>gi|449499575|ref|XP_002193489.2| PREDICTED: Werner syndrome ATP-dependent helicase homolog
[Taeniopygia guttata]
Length = 1497
Score = 175 bits (443), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 131/211 (62%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLA-HHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + +++ L D LV+ ATG GKSLC+Q P + TG VVI PLI
Sbjct: 581 LKTYFGHSSFKPVQWKVINSLLEDRRDNLVVMATGYGKSLCYQFPPVYTGHTGVVICPLI 640
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L+ G+ ACFLGS Q +V+ G Y +IY+ PE ++ L+ L +
Sbjct: 641 SLMEDQVLQLTMTGIPACFLGSAQ-SKQVKDSIRGGQYRVIYMTPEFCSGNLQLLRDLNQ 699
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ GI L A+DE HC+S+WGHDFR +R L +L+ K+L +P++ALTATA+
Sbjct: 700 TVGITLIAVDEAHCISEWGHDFRSSFRNLGILK--------KALPL-VPIIALTATASPS 750
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+REDI+K L + + + TSF RPNL V
Sbjct: 751 IREDIVKCLDL-RNPQVTCTSFDRPNLYLEV 780
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 140/276 (50%), Gaps = 29/276 (10%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY PTRK T + L V Y+A + Q R H +F ++++ VVAT+A
Sbjct: 807 EGPTIIYCPTRKATEQVVCALNKLNVACGTYHAGMESKQRRDTHHQFMRDEIQCVVATVA 866
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYA--NLSSMPTLLPSR 628
FGMGI+K ++R +IHYG P+ +E+YYQE GRAGRDG A C VL+A +L S LL
Sbjct: 867 FGMGINKADIRLVIHYGAPKEMESYYQEMGRAGRDGLPAACHVLWAATDLVSNRRLLGEI 926
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYF-------------GEDFSHEKCQLC 675
R+E +ML +Y + ++ CR KI++ +F G + + C+
Sbjct: 927 RNEAFRLYKLKMLEKMEKY-LVSNGCRRKIILSHFEDRQLRKVSSGIMGTEECCDNCRSS 985
Query: 676 DVCVDGPPE----MKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLK 731
C+ P + +++ ++A L+ ++A +E+ + + G Q+ DR
Sbjct: 986 GSCLAVPSDFEGGLQDFGKQAQQLLSAVSALDEKFGTRMPIL-LLRGSCSQRLPDRYRRH 1044
Query: 732 MFVSKIREQSQKYLATDLLWWRGLARIMENKGYIRE 767
+E +K WW+ L + + +G+++E
Sbjct: 1045 PLFGCGKEWPEK-------WWKLLCQQLIMEGFLKE 1073
>gi|190150443|ref|YP_001968968.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307263787|ref|ZP_07545393.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189915574|gb|ACE61826.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306870908|gb|EFN02646.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 602
Score = 175 bits (443), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 130/215 (60%), Gaps = 15/215 (6%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ S ++ Q+E + + LA DCLV+ TG GKSLC+Q+PAL + +VISPLI
Sbjct: 11 VLNNVFGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLI 70
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQ---PDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +G+ A FL S Q VEQKAL G ++Y+ PE V + +
Sbjct: 71 SLMKDQVDQLLTNGIEAGFLNSTQIFEEQQLVEQKALSGQLKLLYLSPEKV--MTQGFFH 128
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
I+L A+DE HCVS+WGHDFRP+Y L LR+ F ++PLMALTATA
Sbjct: 129 FISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRDTFP---------NVPLMALTATA 179
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
R DIL+ L ++ + L SF RPN+R++V+
Sbjct: 180 DPTTRHDILQHLRLTDPHTY-LGSFDRPNIRYTVQ 213
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 137/275 (49%), Gaps = 17/275 (6%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + I+Y +RK+ I + L + Y+A + Q V
Sbjct: 217 KPVEQLAKFISKQQGKSGIVYCNSRKKVEEITEKLASRKISVMGYHAGMSVQQRETVQNA 276
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F + ++VVVATIAFGMGI+K NVR ++H+ P+S+E+YYQE GRAGRD ++ VL+ +
Sbjct: 277 FQRDNIQVVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYD 336
Query: 618 LSSMP----TLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
+ LL SE + + +++ + CR +L+ YFGE E C+
Sbjct: 337 PADYAWLQKVLLEEPESEQRDIKQHKL--QAIGAFAESQTCRRLVLLNYFGES-RQEPCK 393
Query: 674 LCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMF 733
CD+C+D PP + +A +M VI Q+ G+ G+ QK + ++
Sbjct: 394 NCDICLD-PPRKYDGTLDAQKVMSVIYRTG-QTFGAHHVIGVLRGLNNQKIRQFNHDQLS 451
Query: 734 VSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
V I +EQSQ Y W + R + + G IR+
Sbjct: 452 VYGIGKEQSQDY-------WLSIIRQLIHLGLIRQ 479
>gi|434406622|ref|YP_007149507.1| ATP-dependent DNA helicase RecQ [Cylindrospermum stagnale PCC 7417]
gi|428260877|gb|AFZ26827.1| ATP-dependent DNA helicase RecQ [Cylindrospermum stagnale PCC 7417]
Length = 723
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 143/249 (57%), Gaps = 22/249 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K+ LK HFG+ + Q++ + L + D L++ TG GKSLCFQ+PALL + VV+
Sbjct: 6 KLEQALKYHFGYDQFRPGQRQIIEDALQNRDLLIIMPTGGGKSLCFQLPALLKPGLTVVV 65
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RL 274
SPLI+LM DQ L + ++A FL S KV E+ L+G ++YV PE ++ R
Sbjct: 66 SPLIALMQDQVEALRTNNISATFLNSSLNAFKVRSREEALLQGKIKLLYVAPERLLSERF 125
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ L + E GI+ FAIDE HCVS+WGHDFRP+YR++ LR+ + D+P +
Sbjct: 126 LPLLDLVKEKIGISTFAIDEAHCVSEWGHDFRPEYRQMKSLRKRYP---------DVPTL 176
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLID 394
ALTATAT +VR DI++ L + K + SF R NL + V R K + +L+
Sbjct: 177 ALTATATDRVRADIIQQLGL-KQPSIHIASFNRQNLYYEV-------RTKTKTAYAELLG 228
Query: 395 IYTKKKKTG 403
I + + +G
Sbjct: 229 IIRENQGSG 237
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 140/285 (49%), Gaps = 21/285 (7%)
Query: 492 RTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQL 551
RT AE L +++E G IIY TRK+ + L + +Y+A L +
Sbjct: 216 RTKTKTAYAELLGIIRE--NQGSGIIYCLTRKKVDELTLKLQHDKISVLSYHAGLTDDER 273
Query: 552 RRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD 611
+ T F + + V+VATIAFGMGI+K +VR +IHY P++LE+YYQE+GRAGRD +
Sbjct: 274 SKNQTRFIRDDVRVMVATIAFGMGINKPDVRFVIHYDLPRNLESYYQESGRAGRDDEPSR 333
Query: 612 CVLYANLSSMPTLLPS--RRSEDQ----TKQAYRMLSDCFRYGMNTSCCRAKILVEYFGE 665
C L+ + S + T+ S ++++ Q +KQ R + D Y T CR I + YFGE
Sbjct: 334 CTLFFSFSDIKTIEWSINQKTDPQEQLISKQQLRQVID---YAEGTD-CRRTIQLGYFGE 389
Query: 666 DFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFM 725
F C CD C+ P +++ EA + +A E+ + D + G K QK
Sbjct: 390 RFPG-NCGNCDNCL-YPKPVQDWTIEAMKFLSCVARCKERFGMLHIID-VLRGGKNQKIT 446
Query: 726 DRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
N +S K L WR L R + ++G + + D
Sbjct: 447 Q--NEHDLLSTYGIGKDKTLDE----WRMLGRSLLHQGLLEQTAD 485
>gi|407692774|ref|YP_006817563.1| ATP-dependent DNA helicase RecQ [Actinobacillus suis H91-0380]
gi|407388831|gb|AFU19324.1| ATP-dependent DNA helicase RecQ [Actinobacillus suis H91-0380]
Length = 602
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 129/215 (60%), Gaps = 15/215 (6%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ S ++ Q+E + + LA DCLV+ TG GKSLC+Q+PAL + +VISPLI
Sbjct: 11 VLNNVFGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLI 70
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +G+ A FL S Q VEQKAL G ++Y+ PE V + +
Sbjct: 71 SLMKDQVDQLLTNGIEAGFLNSTQTFEEQQDVEQKALSGQLKLLYLSPEKV--MTQGFFH 128
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
I+L A+DE HCVS+WGHDFRP+Y L LR F ++PLMALTATA
Sbjct: 129 FISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRNTFP---------NVPLMALTATA 179
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
R DIL+ L ++ + L SF RPN+R++V+
Sbjct: 180 DPTTRHDILQHLRLTDPHTY-LGSFDRPNIRYTVQ 213
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 137/275 (49%), Gaps = 17/275 (6%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + I+Y +RK+ I + L + Y+A + Q V
Sbjct: 217 KPMEQLAKFIGKQQGKSGIVYCNSRKKVEEITEKLATRKISVMGYHAGMSVQQRETVQNA 276
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F + ++VVVATIAFGMGI+K NVR ++H+ P+S+E+YYQE GRAGRD ++ VL+ +
Sbjct: 277 FQRDNIQVVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYD 336
Query: 618 LSSMP----TLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
+ LL SE + + +++ + CR +L+ YFGE E C+
Sbjct: 337 PADYAWLQKVLLEEPESEQRDIKQHKL--QAIGAFAESQTCRRLVLLNYFGES-RQEPCK 393
Query: 674 LCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMF 733
CD+C+D PP + +A +M VI Q+ G+ G+ QK + ++
Sbjct: 394 NCDICLD-PPRKYDGTLDAQKVMSVIYRTG-QTFGAHHVIGVLRGLNNQKIRQFNHDQLS 451
Query: 734 VSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
V I +EQSQ Y W + R + + G IR+
Sbjct: 452 VYGIGKEQSQDY-------WLSIIRQLIHLGLIRQ 479
>gi|319790871|ref|YP_004152511.1| ATP-dependent DNA helicase recq [Variovorax paradoxus EPS]
gi|315593334|gb|ADU34400.1| ATP-dependent DNA helicase RecQ [Variovorax paradoxus EPS]
Length = 631
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 136/227 (59%), Gaps = 19/227 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVI 219
+L + FG+S + Q++ + + D LVL TG GKSLC+QIPA+ + V VV+
Sbjct: 21 ILHEVFGYSQFRGAQQDIVDHVVGGGDALVLMPTGGGKSLCYQIPAIARQRAGRGVAVVV 80
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETV--IRL 274
SPLI+LMHDQ L + GV A FL S + VE++ LRG +++Y PE V R
Sbjct: 81 SPLIALMHDQVGALHEAGVNAAFLNSTLDWEQTQDVERRMLRGEITLLYAAPERVNTPRF 140
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ L L E ++LFAIDE HCVS+WGHDFRP+YR L+VL E + +P +
Sbjct: 141 LSQLDSLKERGKLSLFAIDEAHCVSQWGHDFRPEYRALTVLHERYPG---------VPRI 191
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
ALTATA R DI++ L + + +FV +SF RPN+R+++ K ++
Sbjct: 192 ALTATADDLTRADIVERLQLEEARQFV-SSFDRPNIRYTIVEKKDAT 237
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 102/203 (50%), Gaps = 12/203 (5%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L ++ E ++Y +RK +A L G G+ A Y+A L + ++ F +
Sbjct: 241 LRFIEREHEGDAGVVYCQSRKRVEDLATTLQGAGINALPYHAGLDAAVRQKHQDRFLREE 300
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622
V+VATIAFGMGIDK +VR + H P+++E YYQE GRAGRDG AD + L+
Sbjct: 301 GIVMVATIAFGMGIDKPDVRFVGHLDMPKNIEGYYQETGRAGRDGAPADAWMTYGLND-- 358
Query: 623 TLLPSRRSEDQT------KQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCD 676
++ RR D++ KQ R D S CR L+ YFGE + C CD
Sbjct: 359 -VVNQRRMIDESPAGEEFKQVMRGKLDALLSLAEASDCRRVRLLGYFGEKST--PCGNCD 415
Query: 677 VCVDGPPEMKNLKEEANILMQVI 699
C++ PP + + + A L+ I
Sbjct: 416 NCLN-PPNVWDGTDAARKLLSTI 437
>gi|89899271|ref|YP_521742.1| ATP-dependent DNA helicase RecQ [Rhodoferax ferrireducens T118]
gi|89344008|gb|ABD68211.1| ATP-dependent DNA helicase RecQ [Rhodoferax ferrireducens T118]
Length = 618
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 142/233 (60%), Gaps = 19/233 (8%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK---- 214
+ ++ +L++ FG+ + + Q+ + +A D LVL TG GKSLC+QIPA+ +
Sbjct: 3 LSIHLILQEVFGYDAFRGPQQAIIEHVVAGGDALVLMPTGGGKSLCYQIPAIAREQAGQG 62
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETV 271
+ VVISPLI+LMHDQ L + G+ A FL S G+ +VE++ LRG +++Y PE V
Sbjct: 63 ITVVISPLIALMHDQVGALHEAGIKAEFLNSTLSGEQATQVERRLLRGDITLLYAAPERV 122
Query: 272 I--RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKF 329
R + L L E ++LFAIDE HCVS+WGHDFRP+YR L+VL E +G+
Sbjct: 123 TTPRFLAQLDSLYERGKLSLFAIDEAHCVSQWGHDFRPEYRALTVLHERYGS-------- 174
Query: 330 DIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
+P +ALTATA R DI++ L + F+ +SF RPN+ +++ + +++
Sbjct: 175 -VPRIALTATADALTRADIVERLQLQDARLFI-SSFDRPNISYTIVEKRDATQ 225
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 97/196 (49%), Gaps = 6/196 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK IA LC G+ A Y+A L + +F ++ V+VATIAFGMG
Sbjct: 241 IVYCQSRKRVEDIANLLCDEGIAALPYHAGLEAKVRQANQDQFLRSEGIVMVATIAFGMG 300
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+++E YYQE GRAGRDG A C ++ + ++ + +
Sbjct: 301 IDKPDVRFVAHLDMPKNIEGYYQETGRAGRDGQAAQAWMCYGLQDVVNQRRMIDESPAGE 360
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ KQ R D + CR L+ YF E+ + C CD C+ PP + + + A
Sbjct: 361 EFKQGLRGKLDALLGLAEATDCRRVRLLHYFDEE--SKACGNCDNCLH-PPAVWDGTDAA 417
Query: 693 NILMQVIAAYNEQSNS 708
L+ I + S
Sbjct: 418 RKLLSTIYRVQQMGGS 433
>gi|46143327|ref|ZP_00135472.2| COG0514: Superfamily II DNA helicase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 604
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 128/210 (60%), Gaps = 15/210 (7%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG+ S ++ Q+E + + LA DCLV+ TG GKSLC+Q+PAL + +VISPLISLM D
Sbjct: 18 FGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLISLMKD 77
Query: 229 QCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESR 285
Q +L +G+ A FL S Q VEQKAL G ++Y+ PE V + +
Sbjct: 78 QVDQLLTNGIEAGFLNSTQTFEEQQLVEQKALSGQLKLLYLSPEKV--MTQGFFHFISLC 135
Query: 286 GIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVR 345
I+L A+DE HCVS+WGHDFRP+Y L LR+ F ++PLMALTATA R
Sbjct: 136 KISLIAVDEAHCVSQWGHDFRPEYTLLGNLRDTFP---------NVPLMALTATADPTTR 186
Query: 346 EDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
DIL+ L ++ + L SF RPN+R++V+
Sbjct: 187 HDILQHLRLTDPHTY-LGSFDRPNIRYTVQ 215
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 137/275 (49%), Gaps = 17/275 (6%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + I+Y +RK+ I + L + Y+A + Q V
Sbjct: 219 KPVEQLAKFISKQQGKSGIVYCNSRKKVEEITEKLASRKISVMGYHAGMSVQQRETVQNA 278
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F + ++VVVATIAFGMGI+K NVR ++H+ P+S+E+YYQE GRAGRD ++ VL+ +
Sbjct: 279 FQRDNIQVVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYD 338
Query: 618 LSSMP----TLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
+ LL SE + + +++ + CR +L+ YFGE E C+
Sbjct: 339 PADYAWLQKVLLEEPESEQRDIKQHKL--QAIGAFAESQTCRRLVLLNYFGES-RQEPCK 395
Query: 674 LCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMF 733
CD+C+D PP + +A +M VI Q+ G+ G+ QK + ++
Sbjct: 396 NCDICLD-PPRKYDGTLDAQKVMSVIYRTG-QTFGAHHVIGVLRGLNNQKIRQFNHDQLS 453
Query: 734 VSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
V I +EQSQ Y W + R + + G IR+
Sbjct: 454 VYGIGKEQSQDY-------WLSIIRQLIHLGLIRQ 481
>gi|303253309|ref|ZP_07339458.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|307248139|ref|ZP_07530167.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302647991|gb|EFL78198.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|306855316|gb|EFM87491.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 602
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 131/215 (60%), Gaps = 15/215 (6%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ S ++ Q+E + + LA DCLV+ TG GKSLC+Q+PAL + +V+SPLI
Sbjct: 11 VLNNVFGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVVSPLI 70
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +G+ A FL S Q + VEQKAL G ++Y+ PE V + +
Sbjct: 71 SLMKDQVDQLLTNGIEAGFLNSTQTFEEQRLVEQKALSGQLKLLYLSPEKV--MTQGFFH 128
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
I+L A+DE HCVS+WGHDFRP+Y L LR+ F ++PLMALTATA
Sbjct: 129 FISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRDTFP---------NVPLMALTATA 179
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
R DIL+ L ++ + L SF RPN+R++V+
Sbjct: 180 DPTTRHDILQHLRLTDPHTY-LGSFDRPNIRYTVQ 213
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 137/275 (49%), Gaps = 17/275 (6%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + I+Y +RK+ I + L + Y+A + Q V
Sbjct: 217 KPMEQLAKFISKQQGKSGIVYCNSRKKVEEITEKLASRKISVMGYHAGMSVQQRETVQNA 276
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F + ++VVVATIAFGMGI+K NVR ++H+ P+S+E+YYQE GRAGRD ++ VL+ +
Sbjct: 277 FQRDNIQVVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYD 336
Query: 618 LSSMP----TLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
+ LL SE + + +++ + CR +L+ YFGE E C+
Sbjct: 337 PADYAWLQKVLLEEPESEQRDIKQHKL--QAIGAFAESQTCRRLVLLNYFGES-RQEPCK 393
Query: 674 LCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMF 733
CD+C+D PP + +A +M VI Q+ G+ G+ QK + ++
Sbjct: 394 NCDICLD-PPRKYDGTLDAQKVMSVIYRTG-QTFGAHHVIGVLRGLNNQKIRQFNHDQLS 451
Query: 734 VSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
V I +EQSQ Y W + R + + G IR+
Sbjct: 452 VYGIGKEQSQDY-------WLSIIRQLIHLGLIRQ 479
>gi|386817166|ref|ZP_10104384.1| ATP-dependent DNA helicase RecQ [Thiothrix nivea DSM 5205]
gi|386421742|gb|EIJ35577.1| ATP-dependent DNA helicase RecQ [Thiothrix nivea DSM 5205]
Length = 630
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 140/232 (60%), Gaps = 15/232 (6%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +L +G++ + Q++ + + L D L L TG GKSLC+QIPAL V +V+
Sbjct: 6 RAYQILNNTYGYADFRLNQQDIIGSLLQGRDVLALMPTGGGKSLCYQIPALARDGVGIVV 65
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVI--RL 274
SPLI+LM DQ L + G+ A FL S +VE++ L G ++YV PE ++ ++
Sbjct: 66 SPLIALMQDQVDALQQLGIRAAFLNSTLNYGTVLQVERELLEGEIDLLYVAPERLLGEKM 125
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ L+RL S GIALFAIDE HCVS+WGHDFRP+Y++LSVL E F IP +
Sbjct: 126 LALLERLNSSVGIALFAIDEAHCVSQWGHDFRPEYQQLSVLAERFPG---------IPRI 176
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYK 386
ALTATA + R++I++ L + ++ SF RPN+ ++++ + + + ++
Sbjct: 177 ALTATADQRTRQEIIQQLRLQNADVYI-NSFDRPNIHYTIRQGQNARQQLWR 227
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 90/178 (50%), Gaps = 15/178 (8%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+ A +L G A Y+A + R F ++VATIAFGMG
Sbjct: 239 IVYCLSRKKVEDTALWLAEQGRVALPYHAGMSADTRREHQQRFLREDGVIIVATIAFGMG 298
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR + H P+S+EAYYQE GRAGRDG ++ + L + TL + ++
Sbjct: 299 IDKPDVRFVAHLSLPKSIEAYYQETGRAGRDGQPSNAWMAYGLQDVITLRQMMQESTASE 358
Query: 636 QAYR--------MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEM 685
Q R ML C + CR + L+EYFGE + E C CD C PPE+
Sbjct: 359 QQKRVEHHKLQAMLGLC-----EMTTCRRQALLEYFGEP-TPEPCGNCDNC-QSPPEV 409
>gi|423223965|ref|ZP_17210433.1| ATP-dependent DNA helicase RecQ [Bacteroides cellulosilyticus
CL02T12C19]
gi|392637198|gb|EIY31072.1| ATP-dependent DNA helicase RecQ [Bacteroides cellulosilyticus
CL02T12C19]
Length = 611
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 133/221 (60%), Gaps = 20/221 (9%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K+ LK++FG+ S + Q+E + LA D LVL TG GKS+C+Q+PALL VV+
Sbjct: 9 KMIQTLKRYFGYDSFRPLQEEIIRTLLAGRDSLVLMPTGGGKSICYQLPALLCEGTAVVV 68
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVIRL 274
SPLISLM DQ L +GV A L S +++ E ALR G ++Y+ PE +L
Sbjct: 69 SPLISLMKDQVESLCANGVAAGALNSS--NDETENAALRRSCMEGKLKLLYISPE---KL 123
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
I L I+LFAIDE HC+S+WGHDFRP+Y ++ + E F +IP++
Sbjct: 124 IAEANYLLRDMHISLFAIDEAHCISQWGHDFRPEYAQMGFIHEMFP---------NIPVI 174
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
ALTATA REDI++ LH+++ F+ +SF RPNL +VK
Sbjct: 175 ALTATADKITREDIVRQLHLNQPKVFI-SSFDRPNLSLTVK 214
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 98/167 (58%), Gaps = 2/167 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G +AA Y+A L ++ +F +++++V ATIAFGMG
Sbjct: 239 IIYCMSRSKTETVAQMLQKQGFRAAVYHAGLSSARRDEAQDDFINDRVQIVCATIAFGMG 298
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L+ + L Q
Sbjct: 299 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSLADLILLTKFATESGQQG 358
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
L +Y CR +IL+ YFGE + E C CDVC + P
Sbjct: 359 INLEKLQRMQQYA-EADVCRRRILLSYFGEA-TTEDCGNCDVCKNPP 403
>gi|338720942|ref|XP_001915839.2| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase-like [Equus caballus]
Length = 1405
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 125/211 (59%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + G + +VISPLI
Sbjct: 507 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYVGGIAIVISPLI 566
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q N +E L G Y I+Y+ PE R + L +L
Sbjct: 567 SLMEDQVLQLEMSNIPACFLGSAQSKNVLEDVKL-GKYRIVYITPEFCSRNLYLLHQLQA 625
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ GI L A+DE HC+S+WGHDFR +R L L+ F +P++ALTATA+
Sbjct: 626 NIGITLIAVDEAHCISEWGHDFRNSFRNLGSLKTAFPL---------VPVVALTATASSS 676
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+R+DI++ L + K + T F RPNL V
Sbjct: 677 IRDDIVRCLEL-KNPRITCTGFDRPNLYLEV 706
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 134/281 (47%), Gaps = 39/281 (13%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY +RK T + L + Y+A + + + VH F ++++ VVATIA
Sbjct: 732 EGPTIIYCLSRKMTEQVTAELRKLQLACGTYHAGMGSNSRKEVHHRFMRDEIQCVVATIA 791
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSE 631
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C L + + L R
Sbjct: 792 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWTPTDIN--LNRNRLS 849
Query: 632 DQTKQAYR-----MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
D + +R M+ +Y + +S CR +I++ +F ED K + CD C
Sbjct: 850 DIPDEKFRLYKLKMMEKMEKY-LRSSKCRRQIILSHF-EDKQLRKASVGIMGTENCCDNC 907
Query: 679 V----------DGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
D ++ +A +Q+++A N + + GI I F+
Sbjct: 908 RFRLDHCFFIDDSDDAAQDFGPQA---LQLLSAV----NILGEKFGIGVPI---LFLQGS 957
Query: 729 NLKMFVSKIREQSQKYLATDLL--WWRGLARIMENKGYIRE 767
N K K R S D WWR L+R + +G++ E
Sbjct: 958 NSKRLADKYRSHSFFGTGKDQTRAWWRALSRQLITEGFLVE 998
>gi|428307721|ref|YP_007144546.1| ATP-dependent DNA helicase RecQ [Crinalium epipsammum PCC 9333]
gi|428249256|gb|AFZ15036.1| ATP-dependent DNA helicase RecQ [Crinalium epipsammum PCC 9333]
Length = 728
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 144/244 (59%), Gaps = 22/244 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ + + Q++ + L D L+L TG GKSLCFQ+PALL + VV+SPLIS
Sbjct: 11 LKHYFGYDNFRPGQRQIVEEALEKRDLLILMPTGGGKSLCFQLPALLKPGLTVVVSPLIS 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L +G+ A FL S V + L G I+YV PE ++ + L+
Sbjct: 71 LMQDQVEALLDNGIGATFLNSTVDWADVRSREVGILNGKIKILYVAPERLLTDKFTLFLE 130
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
++ GI+ FAIDE HCVS+WGHDFRP+YR+L LR+ + D+P+ ALTAT
Sbjct: 131 QVQRQVGISAFAIDEAHCVSQWGHDFRPEYRQLKQLRQRYR---------DVPIFALTAT 181
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKK 399
AT +VREDI++ L + + + + +SF RPNL + V+ + K+ + QL+ + +
Sbjct: 182 ATNRVREDIIQQLALRQPSIHI-SSFNRPNLYYEVQLKQ-------KQAYLQLLKLIRQY 233
Query: 400 KKTG 403
+ +G
Sbjct: 234 EGSG 237
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 97/176 (55%), Gaps = 5/176 (2%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G I+Y +R+ +A L G+ A Y+A + + T F + ++V+VATIA
Sbjct: 234 EGSGIVYCLSRRHVDEVAFRLQKDGISALPYHAGMTDEERAYNQTRFIRDDVQVMVATIA 293
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSR 628
FGMGI+K +VR +IHY P++LE YYQE+GRAGRDG A C L +L ++ L+ +
Sbjct: 294 FGMGINKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPARCTLLFGTGDLRTINYLIEQK 353
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ + A + L Y T CR KI + YFGE F+ C CD C D PE
Sbjct: 354 SDAQEQRVARQQLQKMIDYAEGTD-CRRKIQLSYFGERFAG-NCDNCDNCRDPKPE 407
>gi|196003676|ref|XP_002111705.1| hypothetical protein TRIADDRAFT_56013 [Trichoplax adhaerens]
gi|190585604|gb|EDV25672.1| hypothetical protein TRIADDRAFT_56013 [Trichoplax adhaerens]
Length = 1020
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 146/256 (57%), Gaps = 20/256 (7%)
Query: 122 VEEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEA 181
++ KE+ G N ES+ + EIG +LK FGH+ + Q +
Sbjct: 138 IDWSKEASIGTILNDATESE--------DFEIGEQPSNAHLKILKDSFGHAQFRPLQWKI 189
Query: 182 LSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTA 240
+++ + H+ D V+ ATG GKSLC+Q PA+ K+V+VISPLISLM DQ L+ + + A
Sbjct: 190 INSIVTHNRDNCVVMATGYGKSLCYQYPAVYLKKIVIVISPLISLMQDQVMALTVNNIPA 249
Query: 241 CFLGSGQPDN-KVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299
C+LGS Q + +V + RG Y ++YV PE + + L ++ GI+L AIDE HCVS
Sbjct: 250 CYLGSAQRNGAEVTRNLKRGRYYLLYVAPEFAVTSGSLFKELNDTIGISLVAIDEAHCVS 309
Query: 300 KWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTK 359
+WGHDFR YR+L +R +L +P+MALTATAT VR DI +L +S
Sbjct: 310 QWGHDFRSSYRQLDFIR---------NLLPHVPIMALTATATPLVRADICTALKLSDPL- 359
Query: 360 FVLTSFFRPNLRFSVK 375
TSF RPNL F V+
Sbjct: 360 ISSTSFDRPNLYFEVR 375
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 131/282 (46%), Gaps = 43/282 (15%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCG-------------------FGVKAAAYNASLPKSQLR 552
+G TIIY +RK++ +A L G FG+K Y+A + +
Sbjct: 401 EGSTIIYCISRKDSEMVASKLQGSNILKQRSLINVRMTDLVTFGIKCGYYHAGMGLQDRQ 460
Query: 553 RVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC 612
R+H EF ++L+ VVATIAFGMGIDK +VRRIIHYG P+ +E+YYQE GRAGRDG C
Sbjct: 461 RIHHEFIRDELQCVVATIAFGMGIDKPDVRRIIHYGAPRDIESYYQEVGRAGRDGLPGVC 520
Query: 613 VLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFG---ED 666
V++ A+ + ED K M++ Y + C R +I+ + +D
Sbjct: 521 VVFFAEADFRLHKHFIGEIADEDFRKHKLEMMNKLLTYLITKDCRRREIISHFESKNIDD 580
Query: 667 F-SHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFM 725
F H C CD C L ++ +E++N + G + Q +
Sbjct: 581 FPKHADC--CDNCRRS-------------LSGAVSENDEKNNVQGPNFGREARDLLQTVL 625
Query: 726 DRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIRE 767
N+ F KY WW+ L +++ +G+++E
Sbjct: 626 QVKNISAFERMAMYCKGKYRPRK--WWKTLGKLLTMEGFLQE 665
>gi|363733349|ref|XP_001235033.2| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase homolog [Gallus gallus]
Length = 1498
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/231 (41%), Positives = 137/231 (59%), Gaps = 21/231 (9%)
Query: 145 VSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLA-HHDCLVLAATGSGKSL 203
+S P E+ I + LK +FGHSS K Q + + + L D LV+ ATG GKSL
Sbjct: 508 LSVPSEIHI---------ACLKTYFGHSSFKPVQWKVIHSVLEDKRDNLVVMATGYGKSL 558
Query: 204 CFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSI 263
C+Q P + TG +VI PLISLM DQ +L+ G+++C LGS Q + V+ G+Y +
Sbjct: 559 CYQFPPVYTGGTGIVICPLISLMEDQVLQLTMSGISSCLLGSAQSKD-VKDNIKAGLYRV 617
Query: 264 IYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANN 323
IY+ PE ++ LQ + + GIAL A+DE HC+S+WGHDFR +R+L N+
Sbjct: 618 IYMTPEFCSGNLELLQDIDRTTGIALIAVDEAHCISEWGHDFRISFRKL---------NS 668
Query: 324 LKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LK +P++ALTATA+ +REDI+ L++ K + TSF RPNL V
Sbjct: 669 LKKALPSVPIVALTATASPSIREDIVNCLNL-KNPQVTCTSFDRPNLYLEV 718
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 140/282 (49%), Gaps = 33/282 (11%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L GV AY+A + + R H +F ++++ VVAT+A
Sbjct: 745 EGPTIIYCPSRKATEQVMFELNKLGVTCGAYHAGMGIQKRRDTHHQFMRDEIQCVVATVA 804
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R +IHYG P+ +E+YYQE GRAGRDG A C VL+ A+L LL
Sbjct: 805 FGMGINKADIRMVIHYGAPKEMESYYQEIGRAGRDGLPASCHVLWTAADLVLNRRLLNEI 864
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGED---------FSHEKCQLCDVC- 678
+E +ML +Y ++++ CR KI++ +F + E+C CD C
Sbjct: 865 HNEKFRLYKLKMLEKMEKY-LSSNSCRRKIILSHFEDKQLRKVSSGIMGTEEC--CDNCR 921
Query: 679 ---------VDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPN 729
D +++ ++A L+ ++A E+ + G Q+ DR
Sbjct: 922 CRTSCLATSSDSDGGLQDFGKQAYQLLSAVSALEEKFGTR-VPILFLRGSNSQRLPDRYR 980
Query: 730 LKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDDR 771
++ ++ WW+ L++ + +G++RE R
Sbjct: 981 KHPLYGSGKDWTEN-------WWKSLSQQLIMEGFLREVSGR 1015
>gi|398809293|ref|ZP_10568144.1| ATP-dependent DNA helicase RecQ [Variovorax sp. CF313]
gi|398086072|gb|EJL76709.1| ATP-dependent DNA helicase RecQ [Variovorax sp. CF313]
Length = 717
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 137/227 (60%), Gaps = 19/227 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVI 219
+L + FG++ + Q++ + + D LVL TG GKSLC+QIPA+ + V VV+
Sbjct: 107 ILHEVFGYAQFRGAQQDIVDHVVGGGDALVLMPTGGGKSLCYQIPAIARQRAGHGVAVVV 166
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETV--IRL 274
SPLI+LMHDQ L + GV+A FL S + VE++ LRG +++Y PE V R
Sbjct: 167 SPLIALMHDQVGALHEAGVSAAFLNSTLDWEETQDVERRMLRGEITLLYAAPERVNTPRF 226
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ L L E ++LFAIDE HCVS+WGHDFRP+YR L+VL E + +P +
Sbjct: 227 LSQLDSLKERGKLSLFAIDEAHCVSQWGHDFRPEYRALTVLHERYAG---------VPRI 277
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
ALTATA R DI++ L + + +FV +SF RPN+R+++ K ++
Sbjct: 278 ALTATADNLTRADIVERLQLEEARQFV-SSFDRPNIRYTIVEKKDAT 323
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 109/224 (48%), Gaps = 19/224 (8%)
Query: 489 SFERTDLLNKPAER-------LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ E+ L ++ E ++Y +RK +A L G+ A
Sbjct: 306 SFDRPNIRYTIVEKKDATTQLLRFIEREHEGDAGVVYCQSRKRVEDVAVMLRDAGINALP 365
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A L + ++ F + V+VATIAFGMGIDK +VR + H P+++E YYQE G
Sbjct: 366 YHAGLDAAVRQKHQDRFLREEGIVMVATIAFGMGIDKPDVRFVGHLDMPKNIEGYYQETG 425
Query: 602 RAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT------KQAYRMLSDCFRYGMNTSCCR 655
RAGRDG AD + L ++ RR D++ KQ R D S CR
Sbjct: 426 RAGRDGGPADAWMTYGLQD---VVNQRRMIDESPAGEEFKQVMRGKLDALLSLAEASDCR 482
Query: 656 AKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
L+ YFGE + C CD C++ PP++ + + A L+ I
Sbjct: 483 RVRLLGYFGEKST--PCGNCDNCLN-PPQVWDGTDAARKLLSTI 523
>gi|407647992|ref|YP_006811751.1| ATP-dependent DNA helicase [Nocardia brasiliensis ATCC 700358]
gi|407310876|gb|AFU04777.1| ATP-dependent DNA helicase [Nocardia brasiliensis ATCC 700358]
Length = 623
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 137/222 (61%), Gaps = 15/222 (6%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L++ FG+ S + Q+E + +A D LVL TG GKSLC+Q+PAL+ V VVISPLI
Sbjct: 28 VLRRVFGYDSFRGDQREIVEHVVAGGDALVLMPTGGGKSLCYQVPALVRPGVGVVISPLI 87
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQ-PDNK--VEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LM DQ LS GV A FL S Q PD + VE + + G ++Y+ PE +RL Q
Sbjct: 88 ALMQDQVDALSALGVRAGFLNSTQYPDERRTVEAQFVAGELDLLYLAPER-LRLESTAQ- 145
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L + +ALFAIDE HCVS+WGHDFRPDY LSVL E + D+P +ALTATA
Sbjct: 146 LFDRGKVALFAIDEAHCVSQWGHDFRPDYLALSVLHERWP---------DVPRIALTATA 196
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
T + R++I++ L + +FV SF RPN+++ ++ R
Sbjct: 197 TGRTRDEIVQRLDLGSARRFV-ASFDRPNIQYRIEPKNKPDR 237
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 111/259 (42%), Gaps = 21/259 (8%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R A +L G++A Y+A L + F VVVATIAFGMG
Sbjct: 253 IVYCLSRNSVEKTAAFLTENGIRAVPYHAGLDNRTRAQNQARFLREDGLVVVATIAFGMG 312
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG + + L+ + ++ S +
Sbjct: 313 IDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPSTAWMVYGLNDVVQQRKMIDSSEGDA 372
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
++ ++ D T CR L+ YF D C CD C+ P
Sbjct: 373 AHRRQLQLHLDAMLALCETVSCRRVQLLNYF--DQPGASCGNCDTCLTPPESWDGTVPAQ 430
Query: 693 NILMQVIAAYNEQSNSMDDDD--GIYSGIKKQKFM--DRPNLKMFVSKIREQSQKYLATD 748
+L V+ E+ S I G K K + D LK+F + TD
Sbjct: 431 KLLSTVLRLKRERGQSFGAGHIVDILLGKKNPKVLQHDHHELKVF----------GIGTD 480
Query: 749 L--LWWRGLARIMENKGYI 765
L + WRG+ R + G +
Sbjct: 481 LRDIEWRGVVRQLLAGGLL 499
>gi|322514973|ref|ZP_08067985.1| ATP-dependent helicase RecQ [Actinobacillus ureae ATCC 25976]
gi|322119026|gb|EFX91190.1| ATP-dependent helicase RecQ [Actinobacillus ureae ATCC 25976]
Length = 602
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 129/215 (60%), Gaps = 15/215 (6%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ S ++ Q+E + + LA DCLV+ TG GKSLC+Q+PAL + +VISPLI
Sbjct: 11 VLNNVFGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLI 70
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +GV A FL S Q VEQKAL G ++Y+ PE V + + R
Sbjct: 71 SLMKDQVDQLLTNGVEAGFLNSTQTFEEQQDVEQKALSGQLKLLYLSPEKV--MTQGFFR 128
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
I+L A+DE HCVS+WGHDFR +Y L LR F ++PLMALTATA
Sbjct: 129 FISLCKISLIAVDEAHCVSQWGHDFRSEYTLLGNLRNTFP---------NVPLMALTATA 179
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
R DIL+ L ++ + L SF RPN+R++V+
Sbjct: 180 DPTTRHDILQHLRLTDPHTY-LGSFDRPNIRYTVQ 213
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 23/278 (8%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ I+Y +RK+ I + L + Y+A + Q V
Sbjct: 217 KPMEQLAKFISKQHGKSGIVYCNSRKKVEEITEKLAARKISVMGYHAGMSVQQRETVQNA 276
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F + ++VVVATIAFGMGI+K NVR ++H+ P+S+E+YYQE GRAGRD ++ VL+ +
Sbjct: 277 FQRDNIQVVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYD 336
Query: 618 LSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMN-------TSCCRAKILVEYFGEDFSHE 670
+ L E ++KQ D ++ + + CR +L+ YFGE E
Sbjct: 337 PADYAWLQKVLLEEPESKQ-----RDIKQHKLQAIGAFAESQTCRRLVLLNYFGES-RQE 390
Query: 671 KCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNL 730
C+ CD+C+D P + +A +M VI Q+ G+ G+ QK +
Sbjct: 391 PCKNCDICLD-PHRKYDGTLDAQKVMSVIYRTG-QTFGAHHVIGVLRGLNNQKIRQFNHD 448
Query: 731 KMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
++ V I +EQSQ Y W + R + + G IR+
Sbjct: 449 QLSVYGIGKEQSQDY-------WLSIIRQLIHLGLIRQ 479
>gi|290490726|dbj|BAI79323.1| WRN helicase [Gallus gallus]
Length = 1498
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/231 (41%), Positives = 137/231 (59%), Gaps = 21/231 (9%)
Query: 145 VSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLA-HHDCLVLAATGSGKSL 203
+S P E+ I + LK +FGHSS K Q + + + L D LV+ ATG GKSL
Sbjct: 508 LSVPSEIHI---------ACLKTYFGHSSFKPVQWKVIHSVLEDKRDNLVVMATGYGKSL 558
Query: 204 CFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSI 263
C+Q P + TG +VI PLISLM DQ +L+ G+++C LGS Q + V+ G+Y +
Sbjct: 559 CYQFPPVYTGGTGIVICPLISLMEDQVLQLTMSGISSCLLGSAQSKD-VKDNIKAGLYRV 617
Query: 264 IYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANN 323
IY+ PE ++ LQ + + GIAL A+DE HC+S+WGHDFR +R+L N+
Sbjct: 618 IYMTPEFCSGNLELLQDIDRTTGIALIAVDEAHCISEWGHDFRISFRKL---------NS 668
Query: 324 LKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LK +P++ALTATA+ +REDI+ L++ K + TSF RPNL V
Sbjct: 669 LKKALPSVPIVALTATASPSIREDIVNCLNL-KNPQVTCTSFDRPNLYLEV 718
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 140/282 (49%), Gaps = 33/282 (11%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L GV AY+A + + R H +F ++++ VVAT+A
Sbjct: 745 EGPTIIYCPSRKATEQVMFELNKLGVTCGAYHAGMGIQKRRDTHHQFMRDEIQCVVATVA 804
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R +IHYG P+ +E+YYQE GRAGRDG A C VL+ A+L LL
Sbjct: 805 FGMGINKADIRMVIHYGAPKEMESYYQEIGRAGRDGLPASCHVLWTAADLVLNRRLLNEI 864
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGED---------FSHEKCQLCDVC- 678
+E +ML +Y ++++ CR KI++ +F + E+C CD C
Sbjct: 865 HNEKFRLYKLKMLEKMEKY-LSSNSCRRKIILSHFEDKQLRKVSSGIMGTEEC--CDNCR 921
Query: 679 ---------VDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPN 729
D +++ ++A L+ ++A E+ + G Q+ DR
Sbjct: 922 CRTSCLATSSDSEGGLQDFGKQAYQLLSAVSALEEKFGTR-VPILFLRGSNSQRLPDRYR 980
Query: 730 LKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDDR 771
++ ++ WW+ L++ + +G++RE R
Sbjct: 981 KHPLYGSGKDWTEN-------WWKSLSQQLIMEGFLREVSGR 1015
>gi|30250483|ref|NP_842553.1| ATP-dependent DNA helicase RecQ [Nitrosomonas europaea ATCC 19718]
gi|30139324|emb|CAD86476.1| ATP-dependent DNA helicase RecQ [Nitrosomonas europaea ATCC 19718]
Length = 549
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 139/226 (61%), Gaps = 20/226 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+LL++ FG+S + Q E ++ + CLVL TG GKSLC+QIPALL +VISP
Sbjct: 6 QTLLREIFGYSEFRGQQAEIITHVVNGDSCLVLMPTGGGKSLCYQIPALLRKGTAIVISP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETV--IRLIK 276
LI+LM +Q + L + GV A +L S + VE++ L G Y ++YV PE + +R
Sbjct: 66 LIALMENQVAVLCRQGVRAVYLNSALTPEAAAAVERRMLAGEYDLVYVAPERLLTVRFRA 125
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
LQR+ IALFAIDE HCVS+WGHDFRP+Y +LS+L E F IP +AL
Sbjct: 126 LLQRIP----IALFAIDEAHCVSQWGHDFRPEYGKLSILPEKFP---------QIPRIAL 172
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
TA+A + R DIL+ L + + F+ +SF RPNL + + ++++SR
Sbjct: 173 TASADARTRADILRCLDLHQARSFI-SSFDRPNLCYRIT-ARSNSR 216
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 101/215 (46%), Gaps = 12/215 (5%)
Query: 481 HRDRDTDRSFERTDLLNKPAER-------LSMLQEPLEDGLTIIYVPTRKETLSIAKYLC 533
H+ R SF+R +L + R L+ ++ I+Y +R++ A +L
Sbjct: 191 HQARSFISSFDRPNLCYRITARSNSRIQLLNFIRSQHAGEAGIVYCQSRRKVEETAAWLN 250
Query: 534 GFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSL 593
+ A AY+A + S R +F + V+VAT AFG+GIDK ++R + H P+S+
Sbjct: 251 SNHIPALAYHAGMETSIRTRHQKKFLQGHGIVMVATSAFGLGIDKSDIRFVAHLDLPKSI 310
Query: 594 EAYYQEAGRAGRDGHLADCVLYANLSSMPTLLP-----SRRSEDQTKQAYRMLSDCFRYG 648
E+YYQE GRAGRDG A + + L + R +QA D
Sbjct: 311 ESYYQETGRAGRDGLPASAWMVYGPGDIIRLRSQTESGTERLPAPIRQAAAARLDALLVL 370
Query: 649 MNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPP 683
T+ CR K L++YFGE C CD C++ P
Sbjct: 371 CETTVCRRKPLLDYFGEPTGSLPCGNCDACLETIP 405
>gi|392396238|ref|YP_006432839.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
gi|390527316|gb|AFM03046.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
Length = 725
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 138/231 (59%), Gaps = 17/231 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K L+++FG+S+ + Q++ +S+ A +D LVL TG GKS+CFQIPA+ + +VI
Sbjct: 5 KARHALQQYFGYSTFRPLQEDIISSVYAKNDTLVLMPTGGGKSICFQIPAITLDGICIVI 64
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQ---PDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L +G++A FL S Q ++E + +G ++YV PE + L +
Sbjct: 65 SPLIALMKDQVNALQTNGISAAFLNSSQDMAEQREIESEVKQGKIKLLYVSPEKL--LTE 122
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
+S I+LFA+DE HC+S+WGHDFRP+Y +L L++ F +P++AL
Sbjct: 123 SFTYFLQSLSISLFAVDEAHCISQWGHDFRPEYTQLKSLKDRFPF---------VPMIAL 173
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY 385
TATA R DI+ L + T+FV SF RPNL +V + + S SY
Sbjct: 174 TATADKITRRDIISQLGLENPTEFV-ASFNRPNLSLNVLPAYKRMDSIVSY 223
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 100/178 (56%), Gaps = 4/178 (2%)
Query: 505 MLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLE 564
+L+ P E G IIY +RK T ++A L G+KA Y+A L + RV +F ++
Sbjct: 224 ILRRPNESG--IIYCLSRKNTENVAARLQKAGMKADYYHAGLNAHERSRVQDDFITDRTP 281
Query: 565 VVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL 624
++ AT+AFGMGIDK NVR ++HY P+++E YYQE GRAGRDG D +L+ + + + L
Sbjct: 282 IICATVAFGMGIDKPNVRWVMHYNIPKNIEGYYQEIGRAGRDGLKGDTMLFYSFNDLEVL 341
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
Q + L +Y + CR KIL+ YFGE E C CDVC + P
Sbjct: 342 KGFAEQSGQKELQLAKLDRMQQYA-DAKICRRKILLSYFGETLL-ENCGNCDVCKNPP 397
>gi|124808958|ref|XP_001348452.1| ATP-dependent DNA helicase, putative [Plasmodium falciparum 3D7]
gi|23497346|gb|AAN36891.1|AE014820_41 ATP-dependent DNA helicase, putative [Plasmodium falciparum 3D7]
Length = 1440
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 135/216 (62%), Gaps = 17/216 (7%)
Query: 166 KKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT---GKVVVVISPL 222
KKHFG+ +LK+FQ EA+ A D ++ ATG GKSLC+QIP+L+ K +VISPL
Sbjct: 44 KKHFGYKNLKDFQVEAVHATFHKKDSFIVMATGMGKSLCYQIPSLMDVCRKKFTIVISPL 103
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP--DNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
ISLM DQ L++ +++ FLGSGQ +NK+ + G+Y I+Y PE + K +
Sbjct: 104 ISLMKDQVDNLNRKRISSVFLGSGQKMNNNKILNEIKHGIYKIVYCSPEYALNN-KDVFI 162
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L ++R I L AIDEVHC+S+WGHDFRP YR+L N L+ + +IP+M LTAT
Sbjct: 163 LLKNR-ILLIAIDEVHCMSEWGHDFRPSYRKL---------NELRIILKEIPIMCLTATC 212
Query: 341 TIQVREDILKSLHMSKGTKFV-LTSFFRPNLRFSVK 375
T V+ DILK+L+ + +S + NL +SV+
Sbjct: 213 TKNVQSDILKNLNFDLQNCLIKRSSVNKKNLFYSVR 248
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 96/162 (59%), Gaps = 12/162 (7%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
T+IYV ++KE S+ +L G+ Y+A L Q + H +F +++++++VAT+AFGM
Sbjct: 287 TLIYVNSKKECESVYSFLKEKGLLVLMYHADLTNDQKKEAHEKFLKDEIQIIVATVAFGM 346
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL---SSMPTLLPSRRSE 631
GIDK ++RRIIHYG+ +SLEAY Q+ GRAGRD A+ +L+ ++ S + ++ +
Sbjct: 347 GIDKPDIRRIIHYGFARSLEAYVQQVGRAGRDNSDAEAILFFHINDESKIKNIILRENTA 406
Query: 632 D--------QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGE 665
+ + + + + Y +T+C R KI EYF E
Sbjct: 407 NNLIETNFQRVEHIVHIFTQASDYAYSTACRRKKIY-EYFDE 447
>gi|223940604|ref|ZP_03632448.1| ATP-dependent DNA helicase RecQ [bacterium Ellin514]
gi|223890722|gb|EEF57239.1| ATP-dependent DNA helicase RecQ [bacterium Ellin514]
Length = 728
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 137/223 (61%), Gaps = 22/223 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK++FG SS + Q+E + LA D L TG GKSLCFQ+PAL+ + VVISPLI+
Sbjct: 16 LKQYFGFSSFRPLQEEIILDTLAGKDVFALLPTGGGKSLCFQLPALVRPGLTVVISPLIA 75
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGM----YSIIYVCPETVIR--LIKPL 278
LM DQ L+ G A FL S + + LRG+ + ++YV PE ++ ++ L
Sbjct: 76 LMKDQVDALTASGAPATFLNSSLEAGESTPR-LRGLHKGEFRLLYVAPERLMLSGFLEDL 134
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+R + LFAIDE HCVS+WGHDFRP+YR +S LRE F ++P MALTA
Sbjct: 135 RRW----NVNLFAIDEAHCVSEWGHDFRPEYRAISKLRELFP---------EVPFMALTA 181
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
TAT +VREDI+++L + + FV SF RPNL + V H+K+ +
Sbjct: 182 TATERVREDIIRALSLREPQIFV-ASFNRPNLTYRV-HAKSGA 222
Score = 122 bits (306), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 97/174 (55%), Gaps = 6/174 (3%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVA 568
P E G I+Y +RK S+A+ L GV A Y+A LP + R F +++ VV A
Sbjct: 234 PRESG--IVYCHSRKTAESVAQKLNEDGVSARPYHAGLPGEERSRNQELFLRDEVRVVCA 291
Query: 569 TIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLL 625
TIAFGMGI+K NVR +IHY P+++E YYQE GRAGRDG ++C+L ++ +
Sbjct: 292 TIAFGMGINKPNVRFVIHYDLPKNVEGYYQETGRAGRDGLPSECLLLFSPGDVVKQTGFI 351
Query: 626 PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ + + A L Y SC RA +L +YFGE+F C+ CD C+
Sbjct: 352 NEKTDPHEQQLAREQLQQMVHYAEIASCRRASLL-DYFGEEFPVANCEACDNCL 404
>gi|156101964|ref|XP_001616675.1| ATP dependent RNA helicase [Plasmodium vivax Sal-1]
gi|148805549|gb|EDL46948.1| ATP dependent RNA helicase, putative [Plasmodium vivax]
Length = 1282
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 131/214 (61%), Gaps = 16/214 (7%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---T 212
+ + K+ + KKHFG+ +LK FQ EA+ A D L++ ATG GKSLC+QIP+L+
Sbjct: 31 ELKTKMEAAQKKHFGYKNLKGFQIEAVHAVFHKRDSLIVMATGMGKSLCYQIPSLMGEAK 90
Query: 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQ--PDNKVEQKALRGMYSIIYVCPET 270
K VVISPLISLM DQ L++ +++ FLGSGQ +++V + G+Y I+Y PE
Sbjct: 91 NKFTVVISPLISLMTDQVDSLNRKRISSVFLGSGQKMSNDQVLTEVKHGIYKIVYCSPEY 150
Query: 271 VIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
+ + L R I L AIDEVHC+S+WGHDFRP YRRL LRE +
Sbjct: 151 ALNNKQLFLML--RRRILLVAIDEVHCMSEWGHDFRPSYRRLHELRE---------ILMG 199
Query: 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTS 364
IP M LTAT T +V+ DILK+L+ + T + TS
Sbjct: 200 IPFMGLTATCTGEVQRDILKNLNFNLKTCLIKTS 233
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 100/174 (57%), Gaps = 14/174 (8%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
T+IYV ++KE SI +L G+ Y+A L + + H +F +++++++VAT+AFGM
Sbjct: 284 TLIYVNSKKECESIFSFLKEKGLLVRMYHADLTNADKKEAHEKFLKDEVQIIVATVAFGM 343
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL---SSMPTLLPSRRSE 631
GIDK ++RRIIHYG+ +SLEAY Q+ GRAGRD A+ +L+ ++ S + LL
Sbjct: 344 GIDKPDIRRIIHYGFSRSLEAYVQQVGRAGRDNSNAEAILFFHINDESKIKNLLLRENIA 403
Query: 632 D--------QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDV 677
+ + + M ++ Y +T C R KI EYF E + E C DV
Sbjct: 404 NNLIETNFQRVEHIITMFTEASDYAYSTICRRKKIY-EYFDE--TPESCSDVDV 454
>gi|300309830|ref|YP_003773922.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1]
gi|300072615|gb|ADJ62014.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae
SmR1]
Length = 618
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 131/215 (60%), Gaps = 17/215 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG+SS + Q E + D LVL TG GKSLC+Q+PALL VVISPLI
Sbjct: 20 VLETVFGYSSFRGHQGEIVQHVAGGGDALVLMPTGGGKSLCYQVPALLRQGTGVVISPLI 79
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIRLIKP-LQ 279
+LM DQ L + GV A FL S Q + ++E++ +G ++YV PE RL+ P
Sbjct: 80 ALMQDQVDALDEVGVRAAFLNSTQSFDEAMQIERRLRQGDLDLLYVAPE---RLMTPRCL 136
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L ES I+LFAIDE HCVS+WGHDFRP+Y +LSVL E F +P +ALTAT
Sbjct: 137 DLLESARISLFAIDEAHCVSQWGHDFRPEYIKLSVLHERFP---------QVPRIALTAT 187
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
A Q RE+I+ L + +FV +SF RPN+R+ +
Sbjct: 188 ADQQTREEIIHRLQLEDARQFV-SSFDRPNIRYQI 221
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 106/223 (47%), Gaps = 18/223 (8%)
Query: 487 DRSFERTDLLNKPAERLSML-----QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
DR R ++ K R +L + P + G I+Y +RK+ A +L G+ A A
Sbjct: 213 DRPNIRYQIVEKANGRKQLLDFIKSEHPEDAG--IVYCLSRKKVEETADFLRSEGINALA 270
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A + +Q F V+VATIAFGMGIDK +VR + H P+S+E YYQE G
Sbjct: 271 YHAGMDYAQRTANQARFLREDKIVMVATIAFGMGIDKPDVRFVCHLDLPKSVEGYYQETG 330
Query: 602 RAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT--KQAYRMLSDCFRYGMNTSC----CR 655
RAGRDG AD + L ++ RR D++ + ++ + M C CR
Sbjct: 331 RAGRDGLPADAWMAYGLQD---VVQQRRMIDESDADETFKRVLGTKLNAMLALCETLHCR 387
Query: 656 AKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQV 698
L++YFGE + C CD C+ P E +L V
Sbjct: 388 RVHLLDYFGEKSA--PCGNCDTCLTPPVSFDATVEVQKLLSTV 428
>gi|67924781|ref|ZP_00518182.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Crocosphaera watsonii WH 8501]
gi|416405865|ref|ZP_11687987.1| ATP-dependent DNA helicase RecQ [Crocosphaera watsonii WH 0003]
gi|67853376|gb|EAM48734.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Crocosphaera watsonii WH 8501]
gi|357261215|gb|EHJ10512.1| ATP-dependent DNA helicase RecQ [Crocosphaera watsonii WH 0003]
Length = 710
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/297 (38%), Positives = 163/297 (54%), Gaps = 31/297 (10%)
Query: 160 KVNSL---LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
+ NSL LK HFG+ + QK+ ++ L + D LV+ TG GKSLCFQ+PALL +
Sbjct: 4 QFNSLENALKDHFGYDQFRPGQKQIITEALNNKDLLVIMPTGGGKSLCFQLPALLKPGLC 63
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIR 273
+V+SPLI+LM DQ L +G+ A FL S ++ E L G ++YV PE ++
Sbjct: 64 IVVSPLIALMQDQVDSLLDNGIGATFLNSTLSREQLKSRENSILNGKIKLLYVAPERLLN 123
Query: 274 --LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
+ L L + G++ FAIDE HCVS WGHDFRP+YR+L LR + +
Sbjct: 124 DSFLNFLDFLNQKIGLSSFAIDEAHCVSAWGHDFRPEYRQLKQLRFRYPT---------V 174
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQ 391
P++ALTATAT +VREDI++ L + K + L SF RPNL + V+ SR SY Q
Sbjct: 175 PVVALTATATKRVREDIIEQLGLEKPSVH-LASFDRPNLYYEVQQ---KSRRSY----AQ 226
Query: 392 LIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGN 448
L++ Y + +E S I L ++ + + + ++ + G YDDE N
Sbjct: 227 LLN-YIR-----SQEGSGIVYCLSRKNVETVAFRLQQDGIEALPYHAGMYDDERATN 277
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 137/264 (51%), Gaps = 15/264 (5%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
++G I+Y +RK ++A L G++A Y+A + + T F + + ++VAT+
Sbjct: 234 QEGSGIVYCLSRKNVETVAFRLQQDGIEALPYHAGMYDDERATNQTRFIRDDVRIIVATV 293
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPS 627
AFGMGI+K +VR ++HY P++LE+YYQE+GRAGRDG A+C L + +L + L+
Sbjct: 294 AFGMGINKPDVRFVVHYDLPRNLESYYQESGRAGRDGEPANCALFLSFGDLKKIDYLIDQ 353
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKN 687
+ S + K A + L Y + CR I++ YFG+ + C+ CD C P +++
Sbjct: 354 KSSPKEQKIARQQLRKVVDYA-EANECRRTIILRYFGQQ-HNGNCENCDNC-KNPKPIED 410
Query: 688 LKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLA 746
EA + +A E+ M + G +K+K + + I +E+S +
Sbjct: 411 WTIEAQKFLSCVARCQERF-GMTHIIDVLRGSRKKKIEKYGHHLLSTYGIGKERSTE--- 466
Query: 747 TDLLWWRGLARIMENKGYIREGDD 770
W+ L R + ++G++ E D
Sbjct: 467 ----EWKMLGRSLIHQGFVNETSD 486
>gi|387793516|ref|YP_006258581.1| ATP-dependent DNA helicase RecQ [Solitalea canadensis DSM 3403]
gi|379656349|gb|AFD09405.1| ATP-dependent DNA helicase RecQ [Solitalea canadensis DSM 3403]
Length = 705
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 128/216 (59%), Gaps = 17/216 (7%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK++FG+ + Q+ + + L D LVL TG GKS+CFQ+PALL + VVISPL
Sbjct: 7 SVLKEYFGYDEFRPLQRNIIQSILDKKDTLVLMPTGGGKSICFQVPALLLDGLCVVISPL 66
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ L +G+ A +L S Q + V + + G ++Y+ PE + I L
Sbjct: 67 ISLMKDQVDALRINGIGAAYLNSSQSFEEEEVVIEDCINGNIKLLYLSPEKLKSSIPMLG 126
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
R I L AIDE HC+S WGHDFRP+Y +LS+L+E F D+P++ALTAT
Sbjct: 127 RF----NIQLLAIDEAHCISSWGHDFRPEYTQLSILKERFS---------DVPIVALTAT 173
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A R+DI++ L++ K FV SF RPNL VK
Sbjct: 174 ADRVTRKDIIRQLNLHKPATFV-ASFDRPNLNLEVK 208
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 93/163 (57%), Gaps = 2/163 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK T +A+ L V AAAY+A + +F ++++VV AT+AFGMG
Sbjct: 233 IIYCLSRKTTEELAEKLREHQVNAAAYHAGMSADDRNETQEDFINDRVQVVCATVAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+++E YYQE GRAGRDG ++ +LY NL + L Q +
Sbjct: 293 IDKSNVRWVIHYNLPKNIEGYYQEIGRAGRDGLESETILYYNLVDIVLLTQFAEQSQQRE 352
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVC 678
L ++ CR KIL+ YFGE+F + C CDVC
Sbjct: 353 LNLEKLKRIQQFA-EADICRRKILINYFGENF-EDSCGNCDVC 393
>gi|91775306|ref|YP_545062.1| ATP-dependent DNA helicase RecQ [Methylobacillus flagellatus KT]
gi|91775450|ref|YP_545206.1| ATP-dependent DNA helicase RecQ [Methylobacillus flagellatus KT]
gi|91709293|gb|ABE49221.1| ATP-dependent DNA helicase RecQ [Methylobacillus flagellatus KT]
gi|91709437|gb|ABE49365.1| ATP-dependent DNA helicase RecQ [Methylobacillus flagellatus KT]
gi|167042457|gb|ABZ07183.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
HF4000_ANIW133B20]
Length = 611
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 133/222 (59%), Gaps = 21/222 (9%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
LL++ FG+S+ + Q+ ++ + D LVL TG GKSLC+QIP+LL V +V+S
Sbjct: 7 AQQLLEQTFGYSAFRGEQEAIVNHVVDGGDALVLMPTGGGKSLCYQIPSLLRPGVGIVVS 66
Query: 221 PLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ L + G+ A FL S V Q +RG ++YV PE RL+ P
Sbjct: 67 PLIALMQDQVDALRQLGIQAAFLNSSLDADTARHVYQALMRGELKVLYVAPE---RLMTP 123
Query: 278 -----LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
L + + GIALFAIDE HCVS+WGHDFRP+YR+L+VL E F ++P
Sbjct: 124 SFLSTLHDIQQRFGIALFAIDEAHCVSQWGHDFRPEYRQLTVLHEEFP---------EVP 174
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+ALTATA R +I++ L + +F+ +SF RPN+R+ V
Sbjct: 175 RIALTATADTPTRNEIVERLGLEHARQFI-SSFDRPNIRYRV 215
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 101/206 (49%), Gaps = 5/206 (2%)
Query: 497 NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHT 556
N + L L+ + IIY +R++ A +L G A Y+A L + +
Sbjct: 220 NARKQLLGFLESEHPNDAGIIYCLSRRKVEETAAWLKEQGWDALPYHAGLDATVRQANQQ 279
Query: 557 EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616
F + ++VAT+AFGMGIDK NVR ++H P+S+E YYQE GRAGRDG AD +
Sbjct: 280 RFLREEGIIMVATVAFGMGIDKPNVRFVVHLDLPKSMEGYYQETGRAGRDGLDADAWMVY 339
Query: 617 NLS---SMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
L +M LL + ++ K+ R D ++ CR + ++ YFGE C
Sbjct: 340 GLGDVVNMRQLLDGSDTPEERKRLERQKLDALLGFCESTACRHQAILRYFGEQHPG-NCG 398
Query: 674 LCDVCVDGPPEMKNLKEEANILMQVI 699
CD C+ P + N E A + + +
Sbjct: 399 QCDNCLS-PVDTWNGTEAARMALSCV 423
>gi|379710384|ref|YP_005265589.1| ATP-dependent DNA helicase [Nocardia cyriacigeorgica GUH-2]
gi|374847883|emb|CCF64955.1| ATP-dependent DNA helicase [Nocardia cyriacigeorgica GUH-2]
Length = 623
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 137/224 (61%), Gaps = 15/224 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+L++ FG+ S + Q E + +A D LVL TG GKSLC+Q+PAL+ V VV+SP
Sbjct: 23 QQVLRRVFGYDSFRGNQAEIVGHVVAGGDALVLMPTGGGKSLCYQVPALVRPGVGVVVSP 82
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQ-PDNK--VEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ LS GV A FL S Q PD + VE + + G ++Y+ PE +RL +
Sbjct: 83 LIALMQDQVDALSALGVRAGFLNSTQNPDQRRMVEAQYVAGELDLLYLAPER-LRL-EST 140
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
RL E IALFAIDE HCVS+WGHDFRPDY LS+L E + ++P +ALTA
Sbjct: 141 ARLLERGTIALFAIDEAHCVSQWGHDFRPDYLALSLLHERWP---------EVPRIALTA 191
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
TAT + R++I++ L + +FV SF RPN+++ ++ R
Sbjct: 192 TATEKTRDEIIERLDLGGARRFV-ASFDRPNIQYRIEPKNRPDR 234
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 112/255 (43%), Gaps = 13/255 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R A +L G++A Y+A L F VVVATIAFGMG
Sbjct: 250 IVYCLSRNSVEKTAAFLTENGIRAVPYHAGLDNRTRAENQARFLREDGLVVVATIAFGMG 309
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG + + L+ + L+ + +
Sbjct: 310 IDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPSTAWMVYGLNDVVQQRKLIDASDGDA 369
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
++ ++ D T CR L+ YFG+ E C CD C++ P
Sbjct: 370 AHRRQLQLHLDAMLALCETVHCRRTQLLAYFGQ--RGEPCGNCDTCLNPPESWDGTVAAQ 427
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDL--L 750
+L V+ E+ S +G + + N K+ E + + TDL +
Sbjct: 428 KLLSAVLRLKRERGQSFG------AGHIIDILLGKKNPKVLQHDHHELTVFGVGTDLRDV 481
Query: 751 WWRGLARIMENKGYI 765
WRG+ R +G +
Sbjct: 482 EWRGVVRQCLAQGLL 496
>gi|168036322|ref|XP_001770656.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678017|gb|EDQ64480.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 964
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 145/257 (56%), Gaps = 39/257 (15%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLC------------------- 204
+LK+ FG++S + FQKE +S L DCLV+ ATGSGKS+C
Sbjct: 4 VLKEFFGYTSFRPFQKEVVSQILKGKDCLVIMATGSGKSICLVHLKTLPHVVNSLLDVVS 63
Query: 205 FQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264
+Q+P L+T K VV+SPLISLM DQ L + G+ A ++GS Q D V +A G Y ++
Sbjct: 64 YQLPPLITKKTAVVVSPLISLMQDQVMGLQQRGIRAEYMGSAQTDRTVNSRAENGDYDLL 123
Query: 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324
Y+ PE + + S+G++L A+DE HCVS+WGHDFR +Y+ L LR
Sbjct: 124 YMTPEKACSVSQSFWTALLSKGVSLLAVDEAHCVSEWGHDFRHEYQNLDALR-------- 175
Query: 325 KSLKFDIPLMALTATAT--------IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
+ +P +ALTATAT +VREDI++S+++ ++SF RPNL + V
Sbjct: 176 -PMLPKVPFVALTATATHNSSGQVLSRVREDIVQSMNLQDAYT-AISSFDRPNLFYGV-- 231
Query: 377 SKTSSRASYKKDFCQLI 393
S + A++K++ + I
Sbjct: 232 SGLNRTATFKQELAREI 248
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 150/294 (51%), Gaps = 23/294 (7%)
Query: 489 SFERTDL------LNKPAE-RLSMLQEPLED----GLTIIYVPTRKETLSIAKYLCGFGV 537
SF+R +L LN+ A + + +E L+D G TIIY T K+ + L G
Sbjct: 221 SFDRPNLFYGVSGLNRTATFKQELAREILKDVGKSGSTIIYCTTIKDVEEVVDALQKEGA 280
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
A Y+A + + VH F ++L++VVAT+AFGMGIDK ++RR+IHYG P+SLEAYY
Sbjct: 281 NARPYHAKMSSTLRTEVHRAFSTDELQIVVATVAFGMGIDKPDIRRVIHYGCPKSLEAYY 340
Query: 598 QEAGRAGRDGHLADCVLYANLSSMPT--LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCR 655
QE+GR GRDG + C +Y S + + KQA + T CR
Sbjct: 341 QESGRCGRDGFPSQCWMYYTRSDFAKRDFFTAGFTTAVRKQAVLDSYAAAKDYCATVKCR 400
Query: 656 AKILVEYFGEDFSHEKCQLCDVCV-DGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDG 714
IL++YFGE+ + E C CD CV G + +NL EEA++L+ + D
Sbjct: 401 RSILLKYFGENPTAENCGNCDNCVRPGGIQYQNLAEEAHLLLSAVKVCGGNFGLGVPID- 459
Query: 715 IYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ G + +K +D K V + R ++Q WW+ LA + GY++E
Sbjct: 460 VLRGSRGKKVVDNGFDKSPVHGLGRGRNQN-------WWKSLADQLLGLGYLKE 506
>gi|395847404|ref|XP_003796366.1| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase [Otolemur garnettii]
Length = 1432
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 129/213 (60%), Gaps = 12/213 (5%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ LK +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + GK+ +VI+P
Sbjct: 534 TFLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYAGKIGLVIAP 593
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LISLM DQ +L + ACFLGS Q +N V G Y I+Y+ PE + LQ+L
Sbjct: 594 LISLMEDQVLQLKMSNIPACFLGSAQSEN-VLNDVKSGKYQIVYMTPEFCSGNLDLLQQL 652
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+ GI L A+DE HC+S+WGHDFR +R L L+ F + +P++ALTATA+
Sbjct: 653 EANIGITLIAVDEAHCISEWGHDFRSSFRNLGSLKTTFPS---------VPVVALTATAS 703
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+REDI+ +L++ + + TSF RPNL V
Sbjct: 704 SSIREDIIHALNL-RNPQITCTSFDRPNLYLEV 735
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 100/179 (55%), Gaps = 15/179 (8%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY +RK T + L + Y+A + + + VH F ++++ V+ATIA
Sbjct: 761 EGPTIIYCHSRKMTEQVTAELRKLSLSCGTYHAGMSINVRKEVHHRFMRDEIQCVIATIA 820
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C L A+L+ L
Sbjct: 821 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLESSCHLLWAPADLAINRFRLTEI 880
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGED---------FSHEKCQLCDVC 678
++E +ML+ +Y +N+S CR +I++ +F + EKC CD C
Sbjct: 881 QNETFRLYKLKMLAKMSKY-LNSSKCRRRIILSHFEDKQLRKASSGIMGTEKC--CDNC 936
>gi|241999220|ref|XP_002434253.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
gi|215496012|gb|EEC05653.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
Length = 556
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/212 (45%), Positives = 129/212 (60%), Gaps = 15/212 (7%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG + Q EA++A L DC +L TG GKSLC+Q+PA+++ V VVISPL SL++D
Sbjct: 26 FGLKQFRLNQLEAINAALLGEDCFILMPTGGGKSLCYQLPAVVSEGVTVVISPLKSLIYD 85
Query: 229 QCSKLSKHGVTACFLGSGQPDNKV--EQKALRGMYSIIYVCPETVI---RLIKPLQRLAE 283
Q KL V A L D V + ++ + ++YV PE V RL+ L RL
Sbjct: 86 QVQKLGSLDVPANHLSGDSDDFSVYSDLRSTQPRLRLLYVTPEKVSASGRLLDALSRLHA 145
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ ++ F IDE HCVS+WGHDFRPDY++LSVLRE F +P+MALTATAT +
Sbjct: 146 NGRLSRFVIDEAHCVSQWGHDFRPDYKKLSVLREKFSG---------VPMMALTATATPR 196
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
VR DIL L M + K+ L SF RPNLR+ ++
Sbjct: 197 VRTDILHQLGM-RDPKWFLQSFNRPNLRYEIR 227
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 108/201 (53%), Gaps = 15/201 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RKE +A+ L GV A AY+A L + V + ++K+ VV ATIAFGMG
Sbjct: 253 IIYCFSRKECDDLAEELSKNGVPAVAYHAGLDDPKRNAVQQRWIDDKVRVVCATIAFGMG 312
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL-------PSR 628
+DK +VR ++HY P+S+E +YQE+GRAGRDG A C+L+ + + + + S
Sbjct: 313 VDKPDVRFVVHYTLPKSMEGFYQESGRAGRDGRPASCLLFYSFADVQRIRRMVEMDKASN 372
Query: 629 RSEDQTKQA--YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL-CDVCVD-GPPE 684
+ QT + + M++ C N + CR + F F + CD C+ G
Sbjct: 373 YAAKQTHLSNLWHMVNFC----ENRTDCRRAQVSRNFDRTFCERNRRFACDNCLSRGCWV 428
Query: 685 MKNLKEEANILMQVIAAYNEQ 705
MK++ E+A +++ + +Q
Sbjct: 429 MKDVTEDAREVVRCVEELCQQ 449
>gi|434389644|ref|YP_007100255.1| ATP-dependent DNA helicase RecQ [Chamaesiphon minutus PCC 6605]
gi|428020634|gb|AFY96728.1| ATP-dependent DNA helicase RecQ [Chamaesiphon minutus PCC 6605]
Length = 743
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 142/244 (58%), Gaps = 18/244 (7%)
Query: 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTG 213
GS+ + LK +FG+ ++ Q+E ++ LA+ D LV+ TG GKSLCFQ+PALL
Sbjct: 4 GSNQFETLEHALKHYFGYDEFRSGQREIITTALANRDLLVVMPTGGGKSLCFQLPALLKN 63
Query: 214 KVVVVISPLISLMHDQCSKLSKHGVTACFLGSG-QPDNKVEQKAL--RGMYSIIYVCPET 270
V +V+SPLI+LM DQ L+ +G+ A FL S + K ++ A G ++YV PE
Sbjct: 64 GVTIVVSPLIALMQDQVQLLANNGIPATFLNSSITTEEKRDRVAAIHNGEIKLLYVAPER 123
Query: 271 VIR--LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
+ + + L L + GIA FAIDE HCVS+WGHDFRPDYR+L+ LR F
Sbjct: 124 LNQEFISNFLVDLHQEVGIAGFAIDEAHCVSEWGHDFRPDYRKLAQLRHYFP-------- 175
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKD 388
+P + LTATAT +VR DI+ L + + + SF RPNL + V+ T A YK+
Sbjct: 176 -KVPWLGLTATATDRVRSDIINQLEL-REPHVHIASFNRPNLYYEVRRKTT---APYKEL 230
Query: 389 FCQL 392
Q+
Sbjct: 231 LAQV 234
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 107/206 (51%), Gaps = 13/206 (6%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G IIY +RK+ + L G+K Y+A L + F + ++V+VAT+A
Sbjct: 238 EGSGIIYCLSRKKVDELTTKLKQDGIKVVPYHAGLDGETRTKNQNSFIRDDVKVIVATVA 297
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--LPSRR 629
FGMGI+K +VR +IHY P+++E YYQE+GRAGRDG A C LY + + T+ L +++
Sbjct: 298 FGMGINKPDVRFVIHYDLPRNIEGYYQESGRAGRDGEPAHCTLYFGMGDIKTIEYLIAQK 357
Query: 630 S--------EDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
ED+ + A + L Y T C R I + YFGE F C CD C
Sbjct: 358 VDPETGMALEDEQRIATQQLRRVINYAEATECRRI-IQLGYFGESFP-GNCDNCDNC-KY 414
Query: 682 PPEMKNLKEEANILMQVIAAYNEQSN 707
P + + EA L+ + + E+ N
Sbjct: 415 PRPISDWTIEAQKLLSCVYRFGERHN 440
>gi|189466850|ref|ZP_03015635.1| hypothetical protein BACINT_03226 [Bacteroides intestinalis DSM
17393]
gi|189435114|gb|EDV04099.1| ATP-dependent DNA helicase RecQ [Bacteroides intestinalis DSM
17393]
Length = 602
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 132/215 (61%), Gaps = 16/215 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK++FG+ S + Q+E + L D LVL TG GKS+C+Q+PALL VV+SPLIS
Sbjct: 5 LKRYFGYDSFRPLQEEIIRTVLDGRDSLVLMPTGGGKSICYQLPALLCEGTAVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSG--QPDNKVEQKA-LRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +GV A L S + +N V ++A + G ++Y+ PE +LI L
Sbjct: 65 LMKDQVESLCANGVAAGALNSSNDETENAVLRRACMEGSLKLLYISPE---KLIAEANYL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
I+LFAIDE HC+S+WGHDFRP+Y ++ +RE F +IP++ALTATA
Sbjct: 122 LRDMHISLFAIDEAHCISQWGHDFRPEYAQMGFIREMFP---------NIPVIALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
REDI++ LH+++ F+ +SF RPNL +VK
Sbjct: 173 KITREDIVRQLHLNQPKVFI-SSFDRPNLSLTVKR 206
Score = 122 bits (306), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 97/167 (58%), Gaps = 2/167 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ A Y+A L + +F +++++V ATIAFGMG
Sbjct: 230 IIYCMSRSKTETVAQMLQKQGLRVAVYHAGLSSVRRDEAQDDFINDRVQIVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L+ + L Q
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSLADLILLTKFATESGQQG 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
L +Y CR +IL+ YFGE + E C CDVC + P
Sbjct: 350 INLEKLQRMQQYA-EADVCRRRILLSYFGEA-TTEDCGNCDVCKNPP 394
>gi|322801995|gb|EFZ22532.1| hypothetical protein SINV_04660 [Solenopsis invicta]
Length = 1148
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 132/223 (59%), Gaps = 26/223 (11%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ ++ FG + + Q +A++A L DC +L TG GKSLC+Q+PALL+ + VV+SPL
Sbjct: 511 IFRQRFGLYTFRPNQLQAINATLLGFDCFILMPTGGGKSLCYQLPALLSIGLTVVVSPLK 570
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVE---------QKALRGMYSIIYVCPETV--- 271
SL+ DQ KL + A L +N+ E + AL+ I+YV PE +
Sbjct: 571 SLISDQVQKLISLDIPAAHLSGSITENQAEAIYRELSKKEPALK----ILYVTPEKISAS 626
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
+L L L E +A F IDEVHCVS+WGHDFRPDY+RL LR+N+ +
Sbjct: 627 PKLCSTLTNLYERELLARFVIDEVHCVSQWGHDFRPDYKRLRCLRDNYPK---------V 677
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
P MALTATAT +VR DIL L M+ K+ ++SF RPNLR+S+
Sbjct: 678 PTMALTATATPRVRTDILHQLGMT-NPKWFMSSFNRPNLRYSI 719
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 116/213 (54%), Gaps = 18/213 (8%)
Query: 501 ERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE 560
E ++M+ ++ I+Y +RK+ A + G+KA +Y+A L Q ++
Sbjct: 730 EIVAMIMTKFKNACGIVYCLSRKDCDDYAAQMKKNGIKALSYHAGLSDVQRSNCQGKWIS 789
Query: 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
+++ V+ ATIAFGMGIDK NVR +IH P+S+E YYQE+GRAGRDG ADC+L+ N S
Sbjct: 790 DEIRVICATIAFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAGRDGETADCILFYNYSD 849
Query: 621 MPTLLPSRRSEDQTKQA--------YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC 672
M + ++ + Q ++M++ C N++ CR + + YFGE F ++C
Sbjct: 850 MHRIRKMLELDNPSPQVINTHMDNLFKMVAFC----ENSTDCRRSLQLNYFGEIFDRQQC 905
Query: 673 QL-----CDVC-VDGPPEMKNLKEEANILMQVI 699
+ CD C M ++ E+A +M+ +
Sbjct: 906 IMNKITACDNCRCKDEITMLDVTEDAKKIMEAV 938
>gi|380513575|ref|ZP_09856982.1| DNA helicase superfamily II protein [Xanthomonas sacchari NCPPB
4393]
Length = 602
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 133/225 (59%), Gaps = 17/225 (7%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
++LL + FG+ + Q+ + A HD LVL TG GKSLC+QIP+LL +VISP
Sbjct: 6 HALLSRVFGYDQFRGLQQNIVEHVAAGHDALVLMPTGGGKSLCYQIPSLLRDGTGIVISP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP- 277
LI+LM DQ L + GV A +L S G+ +VE+ L G ++YV PE RL+ P
Sbjct: 66 LIALMQDQVEALRQLGVRAEYLNSTLDGETAQRVERALLAGELDLLYVAPE---RLLTPR 122
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + P +ALT
Sbjct: 123 FLSLIERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPQT---------PRIALT 173
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
ATA + +I + L +++ FV +SF RPN+R++V + R
Sbjct: 174 ATADPPTQREIAERLDLAQARHFV-SSFDRPNIRYTVVQKDNARR 217
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A +L G+ A Y+A LP F V+ ATIAFGMG
Sbjct: 232 IVYCMSRRKVEETADFLAREGLNALPYHAGLPAEVRADNQRRFLREDGIVMCATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+SLE YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 292 IDKPDVRFVAHTDLPKSLEGYYQETGRAGRDGEAAEAWLCYGLGDVVLLKQMIEQGEAGE 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ K+ R D + CR ++L+ FGE + + C CD C+
Sbjct: 352 ERKRVERRKLDQLLGYCESMQCRRQVLLAGFGETYP-QPCGNCDNCL 397
>gi|428178543|gb|EKX47418.1| cpRecQ plastid-targeted DNA helicase [Guillardia theta CCMP2712]
Length = 673
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 150/256 (58%), Gaps = 32/256 (12%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK+ FG+S+ +N Q+EA+ A +A D LV+ ATGSGKSLC+QIPAL+ +V+VISPLI
Sbjct: 30 VLKRCFGYSNFRNGQEEAIRAAIAGQDSLVVMATGSGKSLCYQIPALVKRGIVIVISPLI 89
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLMHDQ S L ++A + +PD+ E + YV PE+ + K +
Sbjct: 90 SLMHDQVSSLKARNISAT--STNEPDS--EYSVFSHGVRLFYVTPESALGRWKSRWKDLH 145
Query: 284 SR-GIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATI 342
+R GI L AIDE HCVS+WGHDFRP+Y+RL LRE D+P+MALTATAT
Sbjct: 146 ARVGIELIAIDEAHCVSEWGHDFRPEYQRLYELREEVP---------DVPVMALTATATP 196
Query: 343 QVREDILKSLHMS-------KGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDI 395
+V+++I+++L + G V+T+F R NL +S + S F ++ID
Sbjct: 197 RVQDEIIRNLSLGSFRSDQPSGLVRVVTTFDRLNLFYSAYERNSQEAISV---FREIID- 252
Query: 396 YTKKKKTGEKEKSAIP 411
G K+ + +P
Sbjct: 253 -------GSKQGNPVP 261
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 130/258 (50%), Gaps = 28/258 (10%)
Query: 469 DVACGEFYGHSPHRDRDTDRSFERTDLLNKPAER-----LSMLQEPLEDG------LTII 517
+++ G F P +F+R +L ER +S+ +E ++ I+
Sbjct: 205 NLSLGSFRSDQPSGLVRVVTTFDRLNLFYSAYERNSQEAISVFREIIDGSKQGNPVPAIV 264
Query: 518 YVPTRKETLSIAKYLCGFGV---KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
Y T+K+ +A L G+ A Y+A + S+ ++H F ++KL VVVAT AFGM
Sbjct: 265 YALTQKDAEKVADKLVSLGIAQDSVAFYHAGMTDSKRTKIHDLFLKDKLHVVVATTAFGM 324
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYANLSSMPTLLPSRR---- 629
GIDK ++R +IH+G P+++E+YYQ++GRAGRDG + C +LY+ M +
Sbjct: 325 GIDKPDIRHVIHWGAPKTIESYYQQSGRAGRDGEPSRCTLLYSGQDFMLASFYEKSGSSG 384
Query: 630 ---SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS--HEKCQLCDVCV---DG 681
SE ++ +S +Y TSC R +L ++FGE S C CD C+ +G
Sbjct: 385 ELISEIARDALHQGISQMRQYCYLTSCRRIALL-KHFGEKLSGNASSCGQCDNCLRKENG 443
Query: 682 PPEMKNLKEEANILMQVI 699
+++++ E + +
Sbjct: 444 QTQVRDMSAEVRQFLGAV 461
>gi|356537724|ref|XP_003537375.1| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase homolog [Glycine max]
Length = 920
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 130/216 (60%), Gaps = 12/216 (5%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ S+LKK+F S + +Q+E + + DCLV+ ATGSGKSLC+Q+P L+ K +V+S
Sbjct: 6 MRSVLKKYFRFSDFRPYQREVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVS 65
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
PLISLM DQ L + G+ A +LGS Q D V KA G + I+++ PE +
Sbjct: 66 PLISLMRDQVMALKQRGIKAEYLGSAQKDFTVHSKAEHGQFDILFMTPEKACTVPSSFWS 125
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
GI+LFA+DE HC+S+WGHDFR +Y+ L LRE + D+P + LTATA
Sbjct: 126 NLLKAGISLFAVDEAHCISEWGHDFRVEYKHLDKLRE---------VLLDVPFVGLTATA 176
Query: 341 TIQVREDILKSLHMSKGTKFV-LTSFFRPNLRFSVK 375
T +V+ DI+ SL ++ FV + S R NL + VK
Sbjct: 177 TEKVQYDIIGSLKLN--YPFVTIGSVDRTNLFYGVK 210
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 146/292 (50%), Gaps = 19/292 (6%)
Query: 485 DTDRSFERTDLLNKPAERLSML-----QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539
D F LLN+ + L +E G TIIY T K+ I K G++A
Sbjct: 201 DRTNLFYGVKLLNRGQSFIDELVREISKEVTNGGSTIIYCTTIKDVEQIFKSFAEAGIEA 260
Query: 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599
Y+ + H F ++L+V+VATIAFGMGIDK N+R++IHYG P+SLE+YYQE
Sbjct: 261 GMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGIDKPNIRQVIHYGCPKSLESYYQE 320
Query: 600 AGRAGRDGHLADCVLYANLSSMPT---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRA 656
+GR GRDG + C LY S +SE Q K L RY + T+ CR
Sbjct: 321 SGRCGRDGIASVCWLYYTRSDFAKGDFYCGEVKSEKQRKAIMESLLAAERYCVLTT-CRR 379
Query: 657 KILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI-AAYNEQSNSMDDDDGI 715
K L+EYFGE F ++C CD C E +++ EA +LM I + +M D +
Sbjct: 380 KFLLEYFGEKFPADRCGNCDNCKISRKE-RDMSREAFLLMACIHSCRGGWGLNMPID--V 436
Query: 716 YSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIRE 767
G + +K +D K+ + + + Y A WW+ L + ++GY++E
Sbjct: 437 LRGSRSKKILDVQFDKLPLHGL---GKNYPAN---WWKALGYQLISQGYLKE 482
>gi|427727826|ref|YP_007074063.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7524]
gi|427363745|gb|AFY46466.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7524]
Length = 718
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 140/236 (59%), Gaps = 22/236 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK HFG+ + Q++ + L + D LV+ TG GKSLCFQ+PAL+ + VV+SPLI+
Sbjct: 11 LKYHFGYDQFRPGQRQIIEDALQNRDLLVVMPTGGGKSLCFQLPALMKSGLTVVVSPLIA 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L + ++A FL S +V E L G ++YV PE ++ R + L
Sbjct: 71 LMQDQVEALRNNNISATFLNSSLNPYQVRSREDAILNGKVRLLYVAPERLLSERFLPFLD 130
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ E GI++FAIDE HCVS+WGHDFRP+YR+L LR+ + ++P++ALTAT
Sbjct: 131 LVHEKIGISIFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYP---------NVPMLALTAT 181
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDI 395
AT +VR DI++ L + K + SF R NL + V RA K+ + +L+++
Sbjct: 182 ATDRVRADIIQQLGL-KQPSIHIASFNRQNLYYEV-------RAKSKQAYAELLEL 229
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
AE L ++++ +G IIY TRK+ + L + Y+A LP ++ + T F
Sbjct: 224 AELLELIRD--TEGSVIIYCLTRKKVEELTFKLQNDKIAVLPYHAGLPDAERSQNQTRFI 281
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
+ + V+VATIAFGMGI+K +VR ++H+ P++LE+YYQE+GRAGRDG + C ++ + +
Sbjct: 282 RDDVRVMVATIAFGMGINKPDVRLVVHFDIPRNLESYYQESGRAGRDGEPSRCTIFFSFA 341
Query: 620 SMPTLLPS--RRSEDQTKQ-AYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCD 676
+ T+ S +++E Q + A + L Y T CR I + YFGE F+ C CD
Sbjct: 342 DIKTIEWSIEQKTEPQEQLIARQQLRQMIDYAEGTD-CRRTIQLGYFGERFAG-NCGNCD 399
Query: 677 VCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSK 736
C P +++ EA + +A E+ + D + G KK+K + K+
Sbjct: 400 NC-RYPKPLEDWTIEAMKFLSCVARCKERFGMLHIID-VLRGAKKEKITQYEHDKLSTYG 457
Query: 737 IREQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
I K + D WR L R + ++G + + D
Sbjct: 458 I----GKDRSVD--EWRMLGRSLLHQGLLEQTSD 485
>gi|145588880|ref|YP_001155477.1| ATP-dependent DNA helicase RecQ [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047286|gb|ABP33913.1| ATP-dependent DNA helicase RecQ [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 612
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 134/229 (58%), Gaps = 21/229 (9%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ +L FG + Q+ + +A D LVL TG+GKSLC+QIP+L+ V VV+SP
Sbjct: 5 HQVLHDVFGFDQFRGAQESIVEHVVAGGDALVLMPTGAGKSLCYQIPSLIRRGVGVVVSP 64
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP- 277
LI+LM DQ L++ V A FL S KV + L G +IYV PE RL+ P
Sbjct: 65 LIALMQDQVDALTQLDVKASFLNSSLDAATAQKVTSQLLAGDLDLIYVAPE---RLMNPG 121
Query: 278 ----LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
L RL E GIALFAIDE HCVS+WGHDFRP+YR+L+VL E F A +P
Sbjct: 122 FLSILDRLNEGPGIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERFPA---------VPR 172
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
+ALTATA R +I++ L + +FV +SF RPN+R+ V + + +
Sbjct: 173 IALTATADAPTRAEIVERLSLESAHQFV-SSFDRPNIRYRVLQKQNAKQ 220
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 127/276 (46%), Gaps = 22/276 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R+ A++L G A Y+A L + F + ++VAT+AFGMG
Sbjct: 236 IIYCLSRRSVEDTAQWLQDRGWDAMPYHAGLSQEVRSANQKRFLREEGVIMVATVAFGMG 295
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS---SMPTLLPSRRSED 632
IDK NVR + H P+S+E YYQE GRAGRDG A+ + L S+ ++ S + +
Sbjct: 296 IDKPNVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMVYGLGDVVSLRQMVDSGEASE 355
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHE-KCQLCDVCVDGPPEMKNLKEE 691
K+ R + ++ CR + ++ YFGE +H C CD C++ P E N E
Sbjct: 356 DRKRVERQKLNALLGFCESTDCRHQGILRYFGE--AHPGNCGNCDNCLE-PVETWNATHE 412
Query: 692 ANILMQVIAAYNEQ---SNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQ------ 742
+ + ++ ++ +D G + KQ F D+ + S++ QSQ
Sbjct: 413 VQKALSCVYRTGQRFGVTHLIDVLLGKVTPRVKQYFHDQVSTFGIGSEL-NQSQWNSVFR 471
Query: 743 -----KYLATDLLWWRGLARIMENKGYIREGDDRVC 773
YL D+ + GL + + G+ VC
Sbjct: 472 QLVAGGYLEADIALYGGLKLVDAIALPVLRGEQEVC 507
>gi|54026456|ref|YP_120698.1| helicase [Nocardia farcinica IFM 10152]
gi|54017964|dbj|BAD59334.1| putative helicase [Nocardia farcinica IFM 10152]
Length = 621
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 142/244 (58%), Gaps = 20/244 (8%)
Query: 142 SLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGK 201
S A P IG+ EV L++ FG+ S + Q + + D LVL TG GK
Sbjct: 8 SPATDAPSGAGIGAAQEV-----LRRVFGYDSFRGDQAAIVEHVIGGGDALVLMPTGGGK 62
Query: 202 SLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQ-PDNK--VEQKALR 258
SLC+Q+PAL+ V VV+SPLI+LM DQ LS GV A FL S Q PD + VE + L
Sbjct: 63 SLCYQVPALVRPGVGVVVSPLIALMQDQVDALSALGVRAGFLNSTQFPDERATVEAQFLA 122
Query: 259 GMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLREN 318
G ++Y+ PE +RL + RL + +ALFAIDE HCV++WGHDFRPDY LS+L E
Sbjct: 123 GELDLLYLAPER-LRL-ESTARLLDRGTVALFAIDEAHCVAQWGHDFRPDYLALSMLHER 180
Query: 319 FGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
+ D+P +ALTATAT + R++I+ L + +FV SF RPN+++ ++
Sbjct: 181 WP---------DVPRIALTATATEKTRDEIIHRLDLGSARRFV-ASFDRPNIQYRIEPKN 230
Query: 379 TSSR 382
+ R
Sbjct: 231 RAER 234
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 112/255 (43%), Gaps = 13/255 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R A +L G+ A Y+A L + F VVVATIAFGMG
Sbjct: 250 IVYCLSRNSVEKTAAFLNENGIGAVPYHAGLDNRTRAANQSRFLREDGLVVVATIAFGMG 309
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG A + L+ + L+ S +
Sbjct: 310 IDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPATAWMVYGLNDVVQQRKLIDSSEGDA 369
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
++ ++ D T CR L+ YFG+ + C CD C+ PPE + A
Sbjct: 370 AHRRQLQLHLDAMLALCETVDCRRAQLLAYFGQHGT--GCGNCDTCLT-PPESWDGTVAA 426
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDL--L 750
L+ + + + +G + + N K+ E + + DL
Sbjct: 427 QKLLSAVLRLDRERGQ-----AFGAGHVLDILLGKKNPKVLQYDHHELTVFGVGADLRDT 481
Query: 751 WWRGLARIMENKGYI 765
WRG+ R + +G +
Sbjct: 482 EWRGVVRQLLAQGLL 496
>gi|254361946|ref|ZP_04978077.1| ATP-dependent helicase RecQ [Mannheimia haemolytica PHL213]
gi|452745568|ref|ZP_21945402.1| ATP-dependent DNA helicase RecQ [Mannheimia haemolytica serotype 6
str. H23]
gi|153093493|gb|EDN74473.1| ATP-dependent helicase RecQ [Mannheimia haemolytica PHL213]
gi|452086443|gb|EME02832.1| ATP-dependent DNA helicase RecQ [Mannheimia haemolytica serotype 6
str. H23]
Length = 599
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 128/216 (59%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+L FG+ ++ Q+E ++A L + DCLV+ TG GKSLC+Q+PAL + +VISPL
Sbjct: 7 SVLNNIFGYQKFRDGQEEVINAVLENRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPL 66
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A +L S Q VEQKAL G ++Y+ PE V + +
Sbjct: 67 ISLMKDQVDQLITNGIEAAYLNSTQTLEEQQLVEQKALSGQLKLLYLSPEKV--MTQGFF 124
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
I+ A+DE HCVS+WGHDFRP+Y L LR F ++PLMALTAT
Sbjct: 125 HFISLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGLRNTFP---------NVPLMALTAT 175
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A + R DIL L ++ L SF RPN+R++V+
Sbjct: 176 ADLTTRSDILHHLRLN-SPHIYLGSFDRPNIRYTVQ 210
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 138/275 (50%), Gaps = 21/275 (7%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L + I+Y +RK+ I + L + Y+A + Q RV
Sbjct: 214 KPLEQLIKFISKQQGKSGIVYCNSRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNA 273
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F + +++VVATIAFGMGI+K NVR ++H+ P+S+E+YYQE GRAGRD ++ VL+ +
Sbjct: 274 FQRDDIQIVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYD 333
Query: 618 LSSMP----TLLPSRRSEDQTKQAYRM--LSDCFRYGMNTSCCRAKILVEYFGEDFSHEK 671
S LL SE + + +++ + D + CR +L+ YFGE E+
Sbjct: 334 PSDYAWLQKILLEEPESEQRNIKQHKLQAIGDF----AESQTCRRLVLLNYFGEH-RQEQ 388
Query: 672 CQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLK 731
C+ CD+C+D PP+ + +A +M VI Q + G+ K + + +
Sbjct: 389 CKNCDICLD-PPQQYDGLLDAQKVMSVIYRTG-QIFGQHHIIAVLRGMNNLKIREHQHDQ 446
Query: 732 MFVSKI-REQSQKYLATDLLWWRGLARIMENKGYI 765
+ V I +EQSQ Y W+ + R + + G I
Sbjct: 447 LSVYGIGKEQSQHY-------WQNVVRQLIHLGLI 474
>gi|329902979|ref|ZP_08273323.1| ATP-dependent DNA helicase RecQ [Oxalobacteraceae bacterium
IMCC9480]
gi|327548531|gb|EGF33195.1| ATP-dependent DNA helicase RecQ [Oxalobacteraceae bacterium
IMCC9480]
Length = 611
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 131/216 (60%), Gaps = 19/216 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LL+ FG+SS + Q E + D LVL TG GKSLC+QIP+LL V VVISPLI
Sbjct: 13 LLETVFGYSSFRGQQAEIVDLIAQGGDALVLMPTGGGKSLCYQIPSLLRDGVGVVISPLI 72
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKP--L 278
+LM DQ L++ GV A FL S Q +++E+ G ++YV PE RL+ P L
Sbjct: 73 ALMQDQVDALAEVGVRAAFLNSTQTYEEASRIERMVRTGELDLVYVAPE---RLMTPRCL 129
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L+ S+ IALFAIDE HCVS+WGHDFRP+Y +LS+L E F D+P +ALTA
Sbjct: 130 DLLSASK-IALFAIDEAHCVSQWGHDFRPEYIKLSILHERFP---------DVPRIALTA 179
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA Q R +I L + F+ +SF RPN+R+ +
Sbjct: 180 TADQQTRTEIAHRLQLDAAKMFI-SSFDRPNIRYQI 214
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 91/170 (53%), Gaps = 5/170 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+ A++L G++A Y+A + + + F + V+ ATIAFGMG
Sbjct: 238 IVYCLSRKKVEETAEFLNASGIRALPYHAGMKFEERSKNQARFLREEGIVMTATIAFGMG 297
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG A+ + L + ++ +++
Sbjct: 298 IDKPDVRFVAHLDLPKSIEGYYQETGRAGRDGQPANAWMAYGLQDVVQQRRMIDESEADE 357
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
K+ + D T CR + L+EYFG+ S + C CD C++ P
Sbjct: 358 TFKRVLGVKLDAMLGLCETLGCRRRHLLEYFGQ--SSQPCGNCDTCLNPP 405
>gi|392553532|ref|ZP_10300669.1| ATP-dependent DNA helicase [Pseudoalteromonas spongiae
UST010723-006]
Length = 607
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 128/219 (58%), Gaps = 19/219 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+S+L FG+ + Q++ + A LA DCLVL TG GKSLC+Q+PALL + +V+SP
Sbjct: 17 HSVLSSVFGYKQFRAGQEQVIDAVLAGQDCLVLMPTGGGKSLCYQVPALLLPGITIVVSP 76
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIR--LIK 276
LISLM DQ ++L GV A ++ + Q + + Q +G I+YV PE ++
Sbjct: 77 LISLMQDQVAQLKAQGVAAAYINNSQSREEQQLIYQGLHQGQIKILYVAPERLLTDDFST 136
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
LQ L I LFAIDE HCVS WGHDFRP Y RL L++ F IP+MAL
Sbjct: 137 RLQHL----NIGLFAIDEAHCVSHWGHDFRPHYYRLGQLKQRFS---------HIPIMAL 183
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
TATA I R DI+ L ++ + SF RPN+R++++
Sbjct: 184 TATADIATRNDIVMQLGLTNAHIYT-GSFDRPNIRYTIE 221
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 105/194 (54%), Gaps = 11/194 (5%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP +L + + IIY +RK IA+ L G AA+Y+A L Q V
Sbjct: 225 KPLSQLMRFLKEQKGQSGIIYCSSRKRVDDIAEKLVDAGYNAASYHAGLENEQRSFVQNA 284
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F + + +VVAT+AFGMGI+K NVR +IHY P+++E+YYQE GRAGRDG A+ ++Y +
Sbjct: 285 FARDDIHIVVATVAFGMGINKPNVRFVIHYDIPKNIESYYQETGRAGRDGLSAEAIMYFD 344
Query: 618 LSSMPTL------LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEK 671
+ +P + +P + +Q + ++ CR +IL+ YF E + +
Sbjct: 345 PADVPRVKRFFDDIPDEQRRKVEEQRFNAMASF----AEAQTCRRQILLNYFSE-YQGKP 399
Query: 672 CQLCDVCVDGPPEM 685
C CD+C++ P +
Sbjct: 400 CGNCDICLNPPKQF 413
>gi|397779827|ref|YP_006544300.1| ATP-dependent DNA helicase RecQ [Methanoculleus bourgensis MS2]
gi|396938329|emb|CCJ35584.1| ATP-dependent DNA helicase RecQ [Methanoculleus bourgensis MS2]
Length = 780
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 102/235 (43%), Positives = 143/235 (60%), Gaps = 27/235 (11%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+ ++G++S FQ+E + L D L + ATG GKSLC+Q+PAL+TG + VV+SPLIS
Sbjct: 45 LEHYYGYTSFLPFQEEIVRDILRKRDVLAVLATGGGKSLCYQLPALVTGGLTVVVSPLIS 104
Query: 225 LMHDQCSKLSKHGVTACFLGSGQP-DNKVEQKA--LRGMYSIIYVCPETVIRLIKP--LQ 279
LM DQ L GV A L S P D V+ A G ++YV PE R+++P L
Sbjct: 105 LMKDQVDTLVTQGVPAATLNSTLPYDAMVKTLADLEAGRLRLLYVSPE---RVVQPRFLA 161
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L ES G+ L A+DE HC+S+WGH FRP+YR+LSVL+E F ++P++ALTAT
Sbjct: 162 ALRES-GVTLVAVDEAHCISEWGHQFRPEYRQLSVLKEQFP---------EVPMIALTAT 211
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLID 394
A +VR+DI++ L ++ +V +S R NLR++V A K + QLID
Sbjct: 212 AIPEVRQDIIRQLSLADPAVYVGSS-NRENLRYTV--------AGKKDAYPQLID 257
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 112/198 (56%), Gaps = 23/198 (11%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y ++K T IA+ L GV+A Y+A LP + RV +F ++++VV AT AFGMG
Sbjct: 268 IVYFSSKKRTEEIAERLRNDGVRALPYHADLPDNYRHRVQEQFIRDEIDVVCATNAFGMG 327
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT- 634
IDK +VR +IHY P+SLEAY QE GRAGRDG +DC+L+ + P R ++Q
Sbjct: 328 IDKPDVRFVIHYDMPKSLEAYAQETGRAGRDGEASDCILFYS--------PGDRRKNQVM 379
Query: 635 ------------KQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
A + L+D + T+ CR + L+ YFGE F+ C CD+C+ P
Sbjct: 380 LERDSLDRPDLYPVAVQKLNDMAAF-CETTRCRREYLLRYFGETFTGVPCGGCDICLQ-P 437
Query: 683 PEMKNLKEEANILMQVIA 700
E + +E A +++ I+
Sbjct: 438 DEFIDGREIAEKIVRCIS 455
>gi|428773638|ref|YP_007165426.1| ATP-dependent DNA helicase RecQ [Cyanobacterium stanieri PCC 7202]
gi|428687917|gb|AFZ47777.1| ATP-dependent DNA helicase RecQ [Cyanobacterium stanieri PCC 7202]
Length = 713
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 146/244 (59%), Gaps = 22/244 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LKK+FG+ S + Q++ + +AH D LV+ TG GKSLCFQ+PALL V +VISPLIS
Sbjct: 8 LKKYFGYDSFRPGQEKIVQDAIAHKDLLVIMPTGGGKSLCFQLPALLKQGVTIVISPLIS 67
Query: 225 LMHDQCSKLSKHGVTACFLGS--GQPDNKVEQK-ALRGMYSIIYVCPETVIR-LIKP-LQ 279
LM DQ + L +G+ A +L S K+ Q+ L G ++Y+ PE ++ +P L
Sbjct: 68 LMQDQVTALQDNGIGATYLNSTLNYEQTKIRQRDILAGKIKLLYLAPERLVSDTFQPFLV 127
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
LA+ GIA FAIDE HC+S+WGHDFR +YR++ LR+ F +P+ ALTAT
Sbjct: 128 TLAQKIGIAAFAIDEAHCISEWGHDFRQEYRQMRYLRQQFP---------QVPITALTAT 178
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKK 399
AT++V+ DI++ L++ + + SF R NL + V+ + ++ + QL+ I
Sbjct: 179 ATVRVQRDIIEQLNL-RNPQIHRFSFNRQNLYYEVQEKE-------RRAYNQLLHIIRSH 230
Query: 400 KKTG 403
+ +G
Sbjct: 231 QGSG 234
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 98/174 (56%), Gaps = 5/174 (2%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G I+Y +RK T IA+ L GV A Y+A L T F + + ++VAT+AF
Sbjct: 232 GSGIVYCISRKSTEEIAERLVKDGVSALPYHAGLSDKVRSHYQTSFIRDDVRIMVATVAF 291
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRR 629
GMGI+K +VR ++HY P+++E+YYQE+GRAGRDG A+C+L + + + +
Sbjct: 292 GMGINKPDVRLVVHYDLPRNIESYYQESGRAGRDGEKANCILLYSRGDKQKIHYFIRQKT 351
Query: 630 SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPP 683
+ + K AY L+ Y +T+ CR + YFGE F + C CD C++ P
Sbjct: 352 NPQEQKIAYAQLAKVIEYA-DTNYCRRIPQLSYFGEKFKGD-CGNCDNCLNPKP 403
>gi|404494034|ref|YP_006718140.1| ATP-dependent DNA helicase RecQ [Pelobacter carbinolicus DSM 2380]
gi|77546057|gb|ABA89619.1| ATP-dependent DNA helicase RecQ [Pelobacter carbinolicus DSM 2380]
Length = 596
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 102/233 (43%), Positives = 134/233 (57%), Gaps = 29/233 (12%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK+ FG S + Q+E ++ L D VL TG GKSLCFQ+PALL V +V+SPLI
Sbjct: 8 ILKRVFGFQSFRPLQEEIVARILDGQDAFVLMPTGGGKSLCFQLPALLRQGVGIVVSPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR--------GMYSIIYVCPETVIRLI 275
SLM DQ L GV A + S + QKA R G ++Y+ PE RL+
Sbjct: 68 SLMKDQVDALRASGVRAAYYNS-----SLGQKAARQVLAELHAGQLDLLYIAPE---RLM 119
Query: 276 KP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
P L+RL + +AL AIDE HC+S+WGHDFRP+Y +L VLR +F +PL
Sbjct: 120 SPGFLERLRDM-DVALIAIDEAHCISQWGHDFRPEYTQLGVLRRSFPG---------VPL 169
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYK 386
+ALTATA +Q R+DIL L + FV TSF RPN+R++V +R K
Sbjct: 170 VALTATADVQTRQDILSRLELDDDDCFV-TSFDRPNIRYTVLEKHQPARQLMK 221
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 120/212 (56%), Gaps = 8/212 (3%)
Query: 487 DRSFERTDLLNK--PAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544
DR R +L K PA +L I+Y +RK +AK LC G+ AAAY+A
Sbjct: 201 DRPNIRYTVLEKHQPARQLMKFLAGHGSEAGIVYALSRKRVEEVAKKLCDAGLSAAAYHA 260
Query: 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAG 604
L + +RV EF ++L++VVAT+AFGMGIDK NVR ++HY P+++E YYQE GRAG
Sbjct: 261 GLGDGERQRVQDEFLRDELQIVVATVAFGMGIDKSNVRFVVHYDLPKNIEGYYQETGRAG 320
Query: 605 RDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVE 661
RDG A+ +L Y +++ L+ +E+Q + L+ + CR ++L+
Sbjct: 321 RDGLAAEALLLFGYGDIALCRGLIEKGHNEEQNRIELHKLNAMASFA-EALTCRRQVLLG 379
Query: 662 YFGEDFSHEKCQLCDVCVDGPPEMKNLKEEAN 693
YFGE + E C CD+C+ PPE + E+A
Sbjct: 380 YFGEH-ATEDCGNCDICLQ-PPETYDATEDAR 409
>gi|261494329|ref|ZP_05990823.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261309978|gb|EEY11187.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
str. OVINE]
Length = 599
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 127/216 (58%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+L FG+ ++ Q+E ++A L + DCLV+ TG GKSLC+Q+PAL + +VISPL
Sbjct: 7 SVLNNVFGYQKFRDGQEEVINAVLENRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPL 66
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A +L S Q VEQKAL G ++Y+ PE V + +
Sbjct: 67 ISLMKDQVDQLITNGIEAAYLNSTQTLEEQQLVEQKALSGQLKLLYLSPEKV--MTQGFF 124
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
I+ A+DE HCVS+WGHDFRP+Y L LR F D+PLMALTAT
Sbjct: 125 HFISLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGLRNTFP---------DVPLMALTAT 175
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A R DIL L ++ L SF RPN+R++V+
Sbjct: 176 ADPTTRSDILHHLRLN-SPHIYLGSFDRPNIRYTVQ 210
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 138/275 (50%), Gaps = 21/275 (7%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L + I+Y +RK+ I + L + Y+A + Q RV
Sbjct: 214 KPLEQLIKFISKQQGKSGIVYCNSRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNA 273
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F + +++VVATIAFGMGI+K NVR ++H+ P+S+E+YYQE GRAGRD ++ VL+ +
Sbjct: 274 FQRDDIQIVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYD 333
Query: 618 LSSMP----TLLPSRRSEDQTKQAYRM--LSDCFRYGMNTSCCRAKILVEYFGEDFSHEK 671
S LL SE + + +++ + D + CR +L+ YFGE E+
Sbjct: 334 PSDYAWLQKILLEEPESEQRNIKQHKLQAIGDF----AESQTCRRLVLLNYFGEH-RQEQ 388
Query: 672 CQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLK 731
C+ CD+C+D PP+ + +A +M VI Q + G+ K + + +
Sbjct: 389 CKNCDICLD-PPQQYDGLLDAQKVMSVIYRTG-QIFGQHHIIAVLRGMNNLKIREHQHDQ 446
Query: 732 MFVSKI-REQSQKYLATDLLWWRGLARIMENKGYI 765
+ V I +EQSQ Y W+ + R + + G I
Sbjct: 447 LSVYGIGKEQSQHY-------WQNVVRQLIHLGLI 474
>gi|386821390|ref|ZP_10108606.1| ATP-dependent DNA helicase RecQ [Joostella marina DSM 19592]
gi|386426496|gb|EIJ40326.1| ATP-dependent DNA helicase RecQ [Joostella marina DSM 19592]
Length = 699
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/225 (41%), Positives = 131/225 (58%), Gaps = 25/225 (11%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
E + + LK++FG+ S + Q+E + L +DCLV+ TG GKS+C+Q+PALL + +
Sbjct: 4 ETTILNTLKEYFGYDSFRPLQREIIDTILNGNDCLVIMPTGGGKSICYQLPALLQDGLTI 63
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSGQPD-------NKVEQKALRGMYSIIYVCPET 270
VISPLI+LM DQ L+ +G+ ACFL S Q N +E K ++ ++YV PE+
Sbjct: 64 VISPLIALMKDQVDGLNVNGIPACFLNSSQSTAEQEVIFNDIEAKKIK----LLYVAPES 119
Query: 271 VIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
+ L+ + S I+L A+DE HC+S WGHDFRP Y +L L+ F +
Sbjct: 120 ----LSYLENIFSSTKISLIAVDEAHCISSWGHDFRPAYTQLGFLKNRFP---------N 166
Query: 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
PL+ALTATA REDI L++S KFV SF R NL V+
Sbjct: 167 TPLIALTATADKATREDIANQLNISNAKKFV-ASFDRKNLSLEVR 210
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 139/288 (48%), Gaps = 37/288 (12%)
Query: 486 TDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNAS 545
TDR + LNK P E G I+Y +RK T SIA+ L G A AY+A
Sbjct: 213 TDRIKQIIQFLNK---------RPNESG--IVYCLSRKTTESIAEKLQQAGYNAEAYHAG 261
Query: 546 LPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGR 605
+ +V +F +K ++V AT+AFGMGIDK NVR +IHY P+++E YYQE GRAGR
Sbjct: 262 VNHDGRSKVQEDFINDKTQIVCATVAFGMGIDKSNVRWVIHYNLPKNIEGYYQEIGRAGR 321
Query: 606 DGHLADCVLYANLSSMPTLLP----SRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVE 661
DG + +L+ + + + L + SE Q + RM + + CR KIL+
Sbjct: 322 DGLPSYTLLFHSYADVVQLQKFAEGAGNSEVQLAKLERM-----KQYADALSCRRKILLS 376
Query: 662 YFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKK 721
YFGE F + C CDVC PP+ + A + +A E N D + G
Sbjct: 377 YFGE-FIEKDCGNCDVC-KNPPQFFDGTITAQKALSCVARLKENENIGLVID-VLRGSHN 433
Query: 722 QKFMDR--PNLKMFVSKIREQSQKYLATDLLW--WRGLARIMENKGYI 765
Q+ ++ NLK + +A D+ W W+ M N GY+
Sbjct: 434 QQVLENGYQNLKTYG----------IANDISWRDWQHYIIQMVNLGYL 471
>gi|345781559|ref|XP_539984.3| PREDICTED: Werner syndrome ATP-dependent helicase [Canis lupus
familiaris]
Length = 1412
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 134/220 (60%), Gaps = 13/220 (5%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ LK +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + +G++ +VISP
Sbjct: 509 NFLKIYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYSGRIGLVISP 568
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LISLM DQ +L + ACFLGS Q N +E L G Y I+Y+ PE + LQ+L
Sbjct: 569 LISLMEDQVLQLKMSNIPACFLGSAQSKNVLEDIKL-GKYRIVYITPEFCSGNLFLLQQL 627
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
GI L A+DE HC+S+WGHDFR +R L +LK++ +P++ALTATA+
Sbjct: 628 QADIGITLIAVDEAHCISEWGHDFRSSFRTL---------GSLKAILPSVPIVALTATAS 678
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
+REDI++ L++ K + T F RPNL V+ KT S
Sbjct: 679 SSIREDIVRCLNL-KNPQITCTGFDRPNLYLEVRR-KTGS 716
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 102/181 (56%), Gaps = 19/181 (10%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + AY+A L R +H F ++++ VVATIA
Sbjct: 736 EGPTIIYCPSRKTTEQVTAELRKLKLACGAYHAGLDIKSRREIHHRFMRDEIQCVVATIA 795
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYANLSSMPTLLPSRRS 630
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+A L R
Sbjct: 796 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWA---PADICLNRHRL 852
Query: 631 EDQTKQAYR-----MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC--------QLCDV 677
+ T + +R M++ +Y ++++ CR ++++ +F ED K Q CD
Sbjct: 853 SEITSEKFRLYKLKMMAKMEKY-LHSTRCRRQLILSHF-EDKQLRKASVGIMGTEQCCDN 910
Query: 678 C 678
C
Sbjct: 911 C 911
>gi|56477822|ref|YP_159411.1| ATP-dependent DNA helicase protein [Aromatoleum aromaticum EbN1]
gi|56313865|emb|CAI08510.1| ATP-dependent DNA helicase protein [Aromatoleum aromaticum EbN1]
Length = 610
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 131/216 (60%), Gaps = 15/216 (6%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LL+ FG+++ + Q + A D LVL TG GKSLCFQIPAL+ VV+SPLI
Sbjct: 16 LLEHVFGYTAFRGEQAAIVEHVAAGGDALVLMPTGGGKSLCFQIPALMRTGTAVVVSPLI 75
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQ- 279
+LM DQ S L + GV A +L S Q ++ VE+ + G ++YV PE ++
Sbjct: 76 ALMQDQVSALREAGVAAAYLNSSQAADESAAVERDLVAGRLDLLYVAPERLLTARLLATL 135
Query: 280 -RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
RL E+ IALFAIDE HCVS+WGHDFRP+Y +LSVL E F A +P +ALTA
Sbjct: 136 DRLHEAGRIALFAIDEAHCVSQWGHDFRPEYLQLSVLSERFPA---------VPRIALTA 186
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA + RE+I + L + +FV +SF RPN+R+ +
Sbjct: 187 TADPETREEIARRLALGDARRFV-SSFDRPNIRYRM 221
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 5/189 (2%)
Query: 497 NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHT 556
N A+ L+ +++ I+Y +R++ A +L G++A Y+A + + +
Sbjct: 226 NPRAQLLAFIRDDHAGEAGIVYCLSRRKVEETAAWLGEQGIRALPYHAGMAQETRAAHQS 285
Query: 557 EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL-- 614
F V+VATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A +
Sbjct: 286 RFLREDGIVMVATIAFGMGIDKPDVRFVAHLDLPRSIEGYYQETGRAGRDGLAAQAWMAW 345
Query: 615 -YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
++ ++ D+ K R D + T+ CR + L+ +FGE + E C
Sbjct: 346 GAQDVVQQRRMIDESEGADEFKWRARARLDALVGLVETTGCRRQFLLAHFGE--AGEACG 403
Query: 674 LCDVCVDGP 682
CD C++ P
Sbjct: 404 NCDNCLEPP 412
>gi|313113151|ref|ZP_07798778.1| putative ATP-dependent DNA helicase RecQ [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310624545|gb|EFQ07873.1| putative ATP-dependent DNA helicase RecQ [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 525
Score = 172 bits (437), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 141/242 (58%), Gaps = 22/242 (9%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+S+LKK FG+ S + Q+E +S LA D L + TG+GKS+C+Q+PALL + +V+SP
Sbjct: 5 HSILKKVFGYDSFRPGQEEIVSRLLAGQDVLAVMPTGAGKSICYQVPALLLPGITIVVSP 64
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKP- 277
L+SLM DQ L + GV A FL + DN+ + ++A G Y IIYV PE RL P
Sbjct: 65 LVSLMKDQVGALVQAGVAAAFLNNSLNDNQKALMLRRAREGWYKIIYVAPE---RLEMPG 121
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
QR A+ R I++ +DE HC+S+WG DFRP Y R+ ++ + + + A T
Sbjct: 122 FQRFAQEREISMVTVDEAHCISQWGQDFRPSYLRIKAFVDSLPSRPV--------VGAFT 173
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYT 397
ATAT VR+DI + L + K + V TSF RPNL F + + S + +L+D+
Sbjct: 174 ATATAHVRDDIREQLALQKPYE-VTTSFDRPNLYFETRRALPSQKPK------ELLDLVL 226
Query: 398 KK 399
K+
Sbjct: 227 KE 228
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 112/220 (50%), Gaps = 25/220 (11%)
Query: 489 SFERTDLL---------NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539
SF+R +L KP E L ++ + D I+Y T K+ A+ L G++A
Sbjct: 199 SFDRPNLYFETRRALPSQKPKELLDLVLKE-GDNAGIVYCSTTKQVDETARLLQSRGIRA 257
Query: 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599
AAY+A L R+ +F ++++++VAT AFGMGIDK NVR +IHY P+ +E+YYQE
Sbjct: 258 AAYHAKLDADTRRKNQDDFLYDRVQIMVATNAFGMGIDKPNVRFVIHYNMPKDVESYYQE 317
Query: 600 AGRAGRDGHLADCVLYANLSSMPTL-------------LPSRRSEDQTKQAYRMLSDCFR 646
AGRAGRDG A C L + + + T+ LP+ + ++A L
Sbjct: 318 AGRAGRDGQPARCTLLYSGTDVRTIRFFIEKEMEADNGLPADVKAEAARKAEERLKYMTF 377
Query: 647 YGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMK 686
Y C R L+ YFGE + +KC C C+ E +
Sbjct: 378 YSTTQDCLRG-FLLHYFGEA-APKKCGNCSCCLAAEQEAQ 415
>gi|152980056|ref|YP_001354619.1| ATP-dependent DNA helicase [Janthinobacterium sp. Marseille]
gi|151280133|gb|ABR88543.1| ATP-dependent DNA helicase [Janthinobacterium sp. Marseille]
Length = 607
Score = 172 bits (437), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 128/215 (59%), Gaps = 17/215 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG+SS + Q E + D LVL TG GKSLC+QIPALL V VVISPLI
Sbjct: 13 ILETVFGYSSFRGEQAEIVDVVARGGDALVLMPTGGGKSLCYQIPALLRDGVGVVISPLI 72
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKP-LQ 279
+LM DQ L++ GV A FL S Q ++E++ G ++YV PE RL+ P
Sbjct: 73 ALMQDQVDALAEVGVRAAFLNSTQSFEESVRIERRLRSGDLDLLYVAPE---RLMTPRCL 129
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ E+ IALFAIDE HCVS+WGHDFRP+Y RLSVL E F +P +ALTAT
Sbjct: 130 DMLETTKIALFAIDEAHCVSQWGHDFRPEYIRLSVLHERFP---------QVPRIALTAT 180
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
A Q R +I L + FV +SF RPN+R+ +
Sbjct: 181 ADHQTRAEIAHRLQLDDARMFV-SSFDRPNIRYQI 214
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 102/200 (51%), Gaps = 12/200 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+ A++L G+ A Y+A + + + F + V+VATIAFGMG
Sbjct: 238 IVYCLSRKKVEETAEFLNENGITALPYHAGMEFATRSKNQARFLREESIVMVATIAFGMG 297
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR + H P+S+E YYQE GRAGRDG A+ + L ++ RR D+++
Sbjct: 298 IDKPDVRFVAHLDLPKSIEGYYQETGRAGRDGGAANAWMAYGLQD---VVQQRRMIDESE 354
Query: 636 --QAYRMLSDCFRYGMNTSC----CRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLK 689
+ ++ + M C CR L++YFG+ + C CD C++ PP +
Sbjct: 355 ADETFKRVQSVKLDAMLGLCETLYCRRARLLDYFGQ--ASTPCGNCDTCLN-PPRSFDAT 411
Query: 690 EEANILMQVIAAYNEQSNSM 709
E L+ I ++ +M
Sbjct: 412 VEVQKLLSTIYRVGQRFGAM 431
>gi|186683728|ref|YP_001866924.1| ATP-dependent DNA helicase RecQ [Nostoc punctiforme PCC 73102]
gi|186466180|gb|ACC81981.1| ATP-dependent DNA helicase RecQ [Nostoc punctiforme PCC 73102]
Length = 719
Score = 172 bits (437), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 133/222 (59%), Gaps = 16/222 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK HFG+ + Q++ + L + D L++ TG GKSLCFQ+PAL+ + VV+SPLI+
Sbjct: 11 LKYHFGYDRFRPGQRQIIEDALQNRDLLIVMPTGGGKSLCFQLPALIKKGLTVVVSPLIA 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L + + A FL S KV E+ L G ++YV PE ++ R + L
Sbjct: 71 LMQDQVEGLRNNNINATFLNSSLNPYKVRSREEAILSGKVRLLYVAPERLLSERFLPFLD 130
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ E GIA FAIDE HCVS+WGHDFRP+YR++ LR+ + D+P +ALTAT
Sbjct: 131 LVKEKIGIAAFAIDEAHCVSEWGHDFRPEYRQMKSLRKRYP---------DVPTLALTAT 181
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
AT +VR DI++ L + K + SF R NL + V+ SKT S
Sbjct: 182 ATDRVRADIIQQLGL-KQPSIHIASFNRQNLYYEVR-SKTKS 221
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 136/274 (49%), Gaps = 15/274 (5%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
AE L +++E +G IIY TRK+ + L + A +Y+A L + T F
Sbjct: 224 AELLELIRE--NEGSAIIYCLTRKKVDELTFKLQNDKISALSYHAGLSDEERSSNQTRFI 281
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
+ + V+VATIAFGMGI+K +VR +IH+ P++LE+YYQE+GRAGRD + C L+ + S
Sbjct: 282 RDDVRVMVATIAFGMGINKPDVRLVIHFDLPRNLESYYQESGRAGRDSEPSRCTLFFSFS 341
Query: 620 SMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCD 676
+ T+ + + + A + L Y T CR I + YFGE F C CD
Sbjct: 342 DIKTIEWSIDQKTDPQEQLIAKQQLRQVIDYAQGT-VCRRTIQLGYFGERFDG-NCANCD 399
Query: 677 VCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSK 736
C P M++ EA + +A E+ + D + G K QK + + ++
Sbjct: 400 NC-RYPKPMQDWTIEAMKFLSCVARCKERFGMLHIID-VLRGAKSQKIIQNEHDQLSTYG 457
Query: 737 IREQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
I + + D WR LAR + ++G + + D
Sbjct: 458 IGKDK----SVD--EWRMLARSLLHQGLVEQTSD 485
>gi|70954247|ref|XP_746179.1| ATP-dependent DNA helicase [Plasmodium chabaudi chabaudi]
gi|56526711|emb|CAH78235.1| ATP-dependent DNA helicase, putative [Plasmodium chabaudi chabaudi]
Length = 1089
Score = 172 bits (437), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 131/205 (63%), Gaps = 16/205 (7%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---T 212
+ +K+ KK+FG+ +LK+FQ EA+ A D ++ ATG GKSLC+QIP+++
Sbjct: 10 EMRIKMEEAQKKYFGYKNLKHFQIEAVHAVFHKKDSFLVMATGMGKSLCYQIPSIMDEYK 69
Query: 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN--KVEQKALRGMYSIIYVCPET 270
K+ +VISPLISLM DQ L++ + A FLGSGQ N ++ + +G+YSI+Y PE
Sbjct: 70 NKLTIVISPLISLMKDQVDNLNRKKIAAVFLGSGQKKNNQRILSEIKQGLYSIVYCSPEY 129
Query: 271 VIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
+ K L + +SR I L AIDEVHC+S+WGHDFRP YR+L N L+++ +
Sbjct: 130 ALNN-KSLFLVLKSR-ILLVAIDEVHCMSEWGHDFRPSYRKL---------NELRTILRE 178
Query: 331 IPLMALTATATIQVREDILKSLHMS 355
IP M LTAT T V+ DILK+L+ +
Sbjct: 179 IPFMCLTATCTKAVQSDILKNLNFN 203
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 11/161 (6%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
T+IYV ++K+ +I +L G+ Y+A L + R H F ++++++V+AT+AFGM
Sbjct: 263 TLIYVNSKKDCENIYNFLHERGLLVKMYHADLSNEEKREAHEMFLKDEIQIVIATVAFGM 322
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL---SSMPTLLPSRRSE 631
GIDK ++RRIIHYG+ +SLEAY Q+ GRAGRDG A+ +L+ ++ S L+ +
Sbjct: 323 GIDKPDIRRIIHYGFSRSLEAYVQQVGRAGRDGGDAEAILFFHINEESKSKNLIRENIAN 382
Query: 632 DQTKQAYR-------MLSDCFRYGMNTSCCRAKILVEYFGE 665
++ ++ M + + Y + C R KI +YF E
Sbjct: 383 HMMEKNFKRVQHIITMFTQSYDYAYSIICRRKKIY-DYFDE 422
>gi|326514896|dbj|BAJ99809.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 763
Score = 172 bits (437), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 96/230 (41%), Positives = 137/230 (59%), Gaps = 17/230 (7%)
Query: 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTG 213
G+ ++ S+LK++FG+S + Q EA+ A L+ DC L TG GKS+C+QIPAL+
Sbjct: 17 GTKSPKELESVLKQYFGYSEFRGRQLEAIEAVLSGRDCFCLMPTGGGKSMCYQIPALVKT 76
Query: 214 KVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYS--IIYVCP 268
VV+VISPLI+LM +Q S L G+ A FL S Q NK+ + G S ++YV P
Sbjct: 77 GVVLVISPLIALMENQVSSLKSKGIPAEFLSSTQTTANKNKIHEDLDSGRPSLKLLYVTP 136
Query: 269 ETVIR--LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
E V L +L + L AIDE HC+S WGHDFRP YR++S LR+ F
Sbjct: 137 ELVATSGFKAKLTKLHNRGLLGLVAIDEAHCISTWGHDFRPSYRKISSLRKQFP------ 190
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
DIP++ALTATA +V++D++ SL + + + SF RPN+ + V++
Sbjct: 191 ---DIPILALTATAVPKVQKDVISSLSL-QNPVILKASFNRPNIFYEVRY 236
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 100/198 (50%), Gaps = 14/198 (7%)
Query: 494 DLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR 553
DLL+ +S L + + +IIY R + +L G+ +AAY+A L
Sbjct: 238 DLLDDVFSDISNLLKSSGNVCSIIYCLERAACDDLTMHLSQQGISSAAYHAGLNSKVRTT 297
Query: 554 VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV 613
V ++ ++ +VVVAT+AFGMGID+ +VR + H+ P+S+E++YQE+GRAGRD + V
Sbjct: 298 VLDDWLSSRTQVVVATVAFGMGIDRHDVRIVCHFNLPKSMESFYQESGRAGRDQQPSRSV 357
Query: 614 LYANL------------SSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVE 661
LY L SS P S + +++ S Y +S CR K ++E
Sbjct: 358 LYYGLEDRRRMEFILRNSSSRKQQPPSSSTELSEKTLADFSQIVDY-CESSTCRRKKIIE 416
Query: 662 YFGEDFSHEKCQ-LCDVC 678
FGE CQ CD C
Sbjct: 417 SFGEKVQPTLCQRTCDAC 434
>gi|33151690|ref|NP_873043.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP]
gi|33147911|gb|AAP95432.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP]
Length = 601
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 128/220 (58%), Gaps = 15/220 (6%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K +L FG+ +N Q+E + A L DCLV+ TG GKSLC+Q+PAL + +VI
Sbjct: 7 KAKDVLNNIFGYQHFRNGQQEVIEAVLTGQDCLVIMTTGGGKSLCYQVPALCLEGITLVI 66
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ +L +G+ A ++ Q +VEQKAL G ++Y+ PE V + +
Sbjct: 67 SPLISLMKDQVDQLLTYGIEAGYINCSQTFEEQQRVEQKALSGQLKLLYLSPEKV--MTQ 124
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
I+L +DE HCVS+WGHDFRP+Y L LR+ F IPLMAL
Sbjct: 125 AFFSFIFHCKISLIVVDEAHCVSQWGHDFRPEYALLGRLRKTF---------VGIPLMAL 175
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
TATA R+DIL+ L ++ + L SF RPN+R++V+
Sbjct: 176 TATADPTTRKDILQHLCLTNPYTY-LGSFDRPNIRYTVQQ 214
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 110/207 (53%), Gaps = 10/207 (4%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + IIY +RK+ I++ L + Y+A +P Q V
Sbjct: 217 KPLEQLTQFILRQQGKSGIIYCNSRKKVEEISEKLAARKISVMGYHAGMPVQQREMVQEA 276
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F + +++VVATIAFGMGI+K NVR ++H+ P+S+EAYYQE GRAGRD ++ VL+ N
Sbjct: 277 FQRDNIQIVVATIAFGMGINKSNVRFVVHFDLPRSIEAYYQETGRAGRDDLPSEAVLFYN 336
Query: 618 LSSMP----TLLPSRRSED-QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC 672
S TLL ++ Q KQ F + CR +L+ YFGE C
Sbjct: 337 PSDYAWMEKTLLEEPETDQRQIKQHKLQAIGAF---AESQTCRRLVLLNYFGES-RQAPC 392
Query: 673 QLCDVCVDGPPEMKNLKEEANILMQVI 699
Q CD+C++ PP + +A ++ VI
Sbjct: 393 QNCDICLN-PPRQYDGTLDAQKVLSVI 418
>gi|391333104|ref|XP_003740962.1| PREDICTED: Bloom syndrome protein-like [Metaseiulus occidentalis]
Length = 1216
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 129/211 (61%), Gaps = 15/211 (7%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG + ++ QK+A++A L ++DC VL TG GKSLC+Q+PA+ + V VV+SPL SL++D
Sbjct: 566 FGLTEFRHNQKQAINAALLNNDCFVLMPTGGGKSLCYQLPAICSKGVTVVVSPLKSLIYD 625
Query: 229 QCSKLSKHGVTACFLGSGQPDNKVEQKALRG--MYSIIYVCPETVIR---LIKPLQRLAE 283
Q +KL G+ A + S D +V + R + ++YV PE + L ++L
Sbjct: 626 QVTKLKSMGIPATAMMSEVSDREVYEDLRRAEPLLKLLYVTPEKLAASNLLKNTFEKLHR 685
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+A F IDE HCVS+WGHDFR DY +L LR+ F +P+MALTATA+
Sbjct: 686 RNQLARFVIDEAHCVSQWGHDFRVDYHKLGQLRQTFPG---------VPIMALTATASPS 736
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
VR+DILK L M K K+ L SF RPNLR+ +
Sbjct: 737 VRKDILKQLLM-KEPKWFLQSFNRPNLRYQI 766
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 90/173 (52%), Gaps = 10/173 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+ A L G+ A +Y+A + ++ + + + VV ATIAFGMG
Sbjct: 792 IVYCLSRKDCDQTAAKLESAGISAVSYHAGMNDAERSSIQDMWINGRKHVVCATIAFGMG 851
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR + H G P+S+E YYQE GRAGRDG +DCVL+ + +T
Sbjct: 852 IDKANVRFVFHTGLPKSVEGYYQETGRAGRDGLPSDCVLFYRFADYIRWQKLITGGAETT 911
Query: 636 QAYRM-----LSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL-----CDVC 678
+ R L R+ MN C K+++ YFG++F + C + C+ C
Sbjct: 912 ASSRKIHLANLWHMVRFCMNEIDCIRKLILRYFGQEFDKKLCSVNFETTCENC 964
>gi|301631087|ref|XP_002944639.1| PREDICTED: ATP-dependent DNA helicase recQ-like, partial [Xenopus
(Silurana) tropicalis]
Length = 954
Score = 172 bits (436), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 137/226 (60%), Gaps = 19/226 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGK-VVV 217
+S+L FG++ + Q+ + +A D LVL TG GKSLC+Q+PA++ G+ + V
Sbjct: 49 HSVLHDVFGYAQFRGPQEAIVEHVIAGSDALVLMPTGGGKSLCYQVPAIVRRDVGQGITV 108
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVI-- 272
V+SPLI+LMHDQ L + GV A FL S Q VE++ G +++Y PE V
Sbjct: 109 VVSPLIALMHDQVGALHEAGVEAAFLNSTLDWQQTLDVERRLSHGEITLLYAAPERVTTE 168
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
R + L RL E ++LFAIDE HCVS+WGHDFRP+YR+LS+L E + +P
Sbjct: 169 RFLGLLDRLHERGQLSLFAIDEAHCVSQWGHDFRPEYRQLSILHERYPG---------VP 219
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
+ALTATA R DI++ L + +G + L+SF RPN+R+ ++ K
Sbjct: 220 RIALTATADELTRVDIIEGLRL-QGARLFLSSFDRPNIRYRIEEKK 264
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 98/188 (52%), Gaps = 8/188 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
++Y +RK +A+ L G+ A Y+A LP + +R+ H + F VVVATIAFGM
Sbjct: 284 VVYCQSRKRVEEMAEALAQAGIDALPYHAGLP-ADMRQAHQDRFLREDGVVVVATIAFGM 342
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPSRRSE 631
GIDK +VR + H P+++E YYQE GRAGRDG AD + L + ++ +
Sbjct: 343 GIDKPDVRFVAHVDMPKNIEGYYQETGRAGRDGLPADAWMVYGLQDVVNQRRMIDDGEAG 402
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEE 691
++ K R D + CR L+ YFGE + + C CD C+ PP + + +
Sbjct: 403 EEFKAVMRGKLDALLALAEATDCRRMRLLSYFGE--ASKPCGNCDNCI-APPAVWDGTDA 459
Query: 692 ANILMQVI 699
A L+ I
Sbjct: 460 ARKLLSTI 467
>gi|254413079|ref|ZP_05026851.1| ATP-dependent DNA helicase RecQ [Coleofasciculus chthonoplastes PCC
7420]
gi|196180243|gb|EDX75235.1| ATP-dependent DNA helicase RecQ [Coleofasciculus chthonoplastes PCC
7420]
Length = 731
Score = 172 bits (436), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 140/230 (60%), Gaps = 18/230 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK+ FG+++ + Q++ + L + D L++ TG GKSLCFQ+PALL + VV+SPLI+
Sbjct: 33 LKQFFGYTTFRPGQQQIVEEALQNRDLLIIMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 92
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L +G+ A FL S + V E L G ++YV PE ++ R L+
Sbjct: 93 LMQDQVDALVDNGIGATFLNSTLSWDAVRSREMAILNGKIKLLYVAPERLLAERFAPFLE 152
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
++ GI+ FA+DE HCVS WGHDFRP+YR++ LR+ + DIP++ALTAT
Sbjct: 153 QVRSQVGISAFAVDEAHCVSAWGHDFRPEYRQIKQLRQRYP---------DIPILALTAT 203
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDF 389
AT +V++DI++ L + + + + SF RPNL + ++ + R SY + F
Sbjct: 204 ATKRVQQDIVQQLTLRQPSIHI-ASFNRPNLYYEIQPKQ---RQSYNQLF 249
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 127/264 (48%), Gaps = 19/264 (7%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G IIY +R+ +A L G+ A Y+A + F + ++V+VATIAF
Sbjct: 257 GSGIIYCLSRRSVDEVAFRLQKDGISALPYHAGMSDIDRSSNQNRFIRDDVQVIVATIAF 316
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL------LP 626
GMGI+KL+VR +IHY P++LE YYQE+GRAGRDG A C ++ +P L P
Sbjct: 317 GMGINKLDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAYCTIFYRPGDVPRLDYLIDQKP 376
Query: 627 SRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMK 686
R + +Q + + D Y T CR IL+ YFGE F C CD C P ++
Sbjct: 377 DPREQRVARQQLQQIRD---YAEGTD-CRRTILLRYFGERFKG-NCDNCDNCCH-PKPVE 430
Query: 687 NLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLA 746
+ EA + +A E+ D + KK+ + +L R++S
Sbjct: 431 DWTIEAQKFLSCVARCRERFGMTHIIDVLRGSRKKKVEQNGHHLLSTYGIGRDKS----- 485
Query: 747 TDLLWWRGLARIMENKGYIREGDD 770
+ W+ LAR + ++G + E D
Sbjct: 486 --IDAWKMLARSLLHQGLMDETTD 507
>gi|237747534|ref|ZP_04578014.1| ATP-dependent DNA helicase [Oxalobacter formigenes OXCC13]
gi|229378896|gb|EEO28987.1| ATP-dependent DNA helicase [Oxalobacter formigenes OXCC13]
Length = 608
Score = 172 bits (436), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 137/218 (62%), Gaps = 15/218 (6%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K +L+ FG+SS ++ Q+E ++ + HD LVL TG GKSLC+QIPAL+ V +VI
Sbjct: 8 KALEILQSVFGYSSFRDQQEEIIAEIASGHDALVLMPTGGGKSLCYQIPALVRDGVGIVI 67
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ L GV A +L S + +++E+ L+ ++Y+ PE ++ +
Sbjct: 68 SPLIALMQDQVDALETAGVRAAYLNSTLSYEEASRIERAVLKNELDLVYIAPERLVTE-R 126
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L L++++ IALFAIDE HCVS+WGHDFRP+Y +LS+L E F A +P +AL
Sbjct: 127 CLNWLSKTK-IALFAIDEAHCVSQWGHDFRPEYIQLSILHEYFPA---------VPRIAL 176
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TATA R +IL L + +F+ +SF RPN+R+ +
Sbjct: 177 TATADAHTRAEILSRLKLENSRQFI-SSFDRPNIRYCI 213
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 110/217 (50%), Gaps = 15/217 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH-TEFHENKLEVVVATIAFGM 574
I+Y +RK+ + +L + A Y+A + +Q R V+ + F + V+VATIAFGM
Sbjct: 237 IVYCLSRKKVDEMVAFLLEHHINALPYHAGM-DTQTRSVNQSRFLREEGIVMVATIAFGM 295
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT 634
GIDK +VR + H P+S+E YYQE GRAGRDG+ A + L ++ RR D++
Sbjct: 296 GIDKPDVRFVAHLDLPKSMEGYYQETGRAGRDGNPATAWMSYGLQD---VVQQRRMIDES 352
Query: 635 KQ--AYRMLS----DCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
+R + D T CR L+EYFGE S C CD C+ PP K+
Sbjct: 353 DADPEHRRIQIGKLDALLGFCETLTCRRVRLLEYFGE--SAAPCGNCDTCLT-PPVAKDG 409
Query: 689 KEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFM 725
++ L+ I ++ ++ D + GI ++ +
Sbjct: 410 TKDMQKLLSTIYRVGQRFGALHVID-VLRGISSERVL 445
>gi|411116551|ref|ZP_11389038.1| ATP-dependent DNA helicase RecQ [Oscillatoriales cyanobacterium
JSC-12]
gi|410712654|gb|EKQ70155.1| ATP-dependent DNA helicase RecQ [Oscillatoriales cyanobacterium
JSC-12]
Length = 741
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 144/241 (59%), Gaps = 24/241 (9%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
V + S LK +FG+ S + Q++ + L + D LV+ TG GKSLC+Q+PALL + VV
Sbjct: 12 VSLESALKHYFGYDSFRPGQRQIIEKALQNQDLLVVMPTGGGKSLCYQLPALLKPGLTVV 71
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVI--- 272
+SPLI+LM DQ L +G+ A FL SG + E+ L G ++Y+ PE ++
Sbjct: 72 VSPLIALMQDQVQALQDNGIPATFLNSSLSGTELRERERAILDGEMKLVYIAPERLLNEG 131
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
RL L ++ +A AIDE HCVS+WGHDFRP+YR+LS LR+ F ++P
Sbjct: 132 RLAGWLSQVY----VAAIAIDEAHCVSEWGHDFRPEYRQLSQLRQWFA---------NVP 178
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQL 392
+MALTATAT +VR DI++ L++ V ++F RPNL + V + + SY ++ QL
Sbjct: 179 IMALTATATERVRYDIIEQLNLQDPVLHV-STFNRPNLYYEV---RPKHKQSY-RELLQL 233
Query: 393 I 393
I
Sbjct: 234 I 234
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 133/265 (50%), Gaps = 20/265 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK + L G+ A Y+A + + F + ++V+VATIAFGMG
Sbjct: 243 IIYCLSRKRVDELTTKLQRDGISALPYHAGMDNQLRSENQSRFIRDNVQVMVATIAFGMG 302
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--LPSRRS--- 630
I+K +VR ++HY P+++E YYQE+GRAGRDG A C L+ ++ + T+ L S++
Sbjct: 303 INKPDVRFVVHYDLPRNIEGYYQESGRAGRDGEPARCTLFFSMGDVKTVEFLISQKVDPN 362
Query: 631 -----EDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEM 685
ED+ + A + L Y T C R I + YFGE FS C CD C+ P +
Sbjct: 363 TGEPLEDEQRIATQQLRRVINYAEATECRRI-IQLGYFGETFSG-NCGNCDNCLQ-PKPV 419
Query: 686 KNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYL 745
++ EA + +A E+ M+ + G + Q+ + + K+ I + +
Sbjct: 420 EDWTIEAQKFLSCVARVKERF-GMNYVIDVLRGSRNQRLLQNGHDKLSTYGI---GKDHS 475
Query: 746 ATDLLWWRGLARIMENKGYIREGDD 770
A + WR L R + ++G + E D
Sbjct: 476 ADE---WRMLGRSLIHQGLVEETSD 497
>gi|17227701|ref|NP_484249.1| ATP-dependent DNA helicase [Nostoc sp. PCC 7120]
gi|17135183|dbj|BAB77729.1| ATP-dependent DNA helicase [Nostoc sp. PCC 7120]
Length = 718
Score = 172 bits (435), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 141/236 (59%), Gaps = 22/236 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK HFG+ + + Q++ + L + D +V+ TG GKSLCFQ+PAL+ + VV+SPLI+
Sbjct: 11 LKYHFGYDNFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALMKQGLTVVVSPLIA 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L + ++A FL S +V E+ L G ++YV PE ++ R + L
Sbjct: 71 LMQDQVEALRNNNISATFLNSSLNAYQVRSREEAILNGKVRLLYVAPERLLSERFLPFLD 130
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ E GI++FAIDE HCVS+WGHDFRP+YR+L LR+ + ++P++ALTAT
Sbjct: 131 LVKEKVGISIFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYP---------NVPVLALTAT 181
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDI 395
AT +VR DI++ L + K L SF R NL + V R K+ + +L+++
Sbjct: 182 ATDRVRADIIQQLGL-KQPSIHLASFNRQNLYYEV-------RPKSKQAYAELLEL 229
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 142/277 (51%), Gaps = 21/277 (7%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
AE L ++++ +G TIIY TRK+ + L + A +Y+A LP + + T F
Sbjct: 224 AELLELIRD--NEGSTIIYCLTRKKVEELTFKLQKDKISALSYHAGLPDDERSKNQTRFI 281
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
+ + V+VATIAFGMGI+K +VR ++H+ P++LE+YYQE+GRAGRDG + C ++ +
Sbjct: 282 RDDVRVMVATIAFGMGINKPDVRLVVHFDIPRNLESYYQESGRAGRDGEASRCTIFFSFG 341
Query: 620 SMPTLLPS--RRSEDQ----TKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
+ T+ S ++++ Q KQ R + D Y T CR I + YFGE F C
Sbjct: 342 DIKTIEWSIEQKTDPQEQLIAKQQLRQMID---YAEGTD-CRRTIQLGYFGERFPG-NCG 396
Query: 674 LCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMF 733
CD C P M++ EA + +A E+ + D + G KK K + + K+
Sbjct: 397 NCDNC-RYPKPMQDWTIEAMKFLSCVARCKERFGMLHIID-VLRGAKKDKIIQYEHDKLS 454
Query: 734 VSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
I K D WR L R + ++G + + D
Sbjct: 455 TYGI----GKDRTVD--EWRTLGRSLLHQGLLEQTSD 485
>gi|428310069|ref|YP_007121046.1| ATP-dependent DNA helicase RecQ [Microcoleus sp. PCC 7113]
gi|428251681|gb|AFZ17640.1| ATP-dependent DNA helicase RecQ [Microcoleus sp. PCC 7113]
Length = 757
Score = 172 bits (435), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 135/222 (60%), Gaps = 15/222 (6%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK FG+ + + Q++ + LA D LV+ TG GKSLCFQ+PALL + VV+SPLI+
Sbjct: 59 LKHFFGYDAFRPGQRQIVEEALAQRDLLVIMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 118
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L +G+ A FL S + V E L G ++YV PE ++ + + L+
Sbjct: 119 LMQDQVDALVDNGIGATFLNSTLSWDDVRSRELAILNGKIKLLYVAPERLLGEKFLPFLE 178
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
++ GI+ FAIDE HCVS+WGHDFRP+YR++ LR+ + DIP++ALTAT
Sbjct: 179 KVRAQIGISAFAIDEAHCVSEWGHDFRPEYRQMKQLRQRYP---------DIPILALTAT 229
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
AT +V++DIL+ L + + + SF RPNL + V+ + S
Sbjct: 230 ATKRVQQDILEQLTL-RQPGIHIASFNRPNLYYEVQPKERHS 270
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 120/245 (48%), Gaps = 13/245 (5%)
Query: 489 SFERTDLLN--KPAERLSMLQE----PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF R +L +P ER S Q G I+Y +R+ +A L G+ A Y
Sbjct: 253 SFNRPNLYYEVQPKERHSYNQLLKKIKSHKGSGIVYCLSRRAVDEVAFRLQKDGIDALPY 312
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A + T F + ++V+VATIAFGMGI+K +VR +IHY P +LE YYQE+GR
Sbjct: 313 HAGMSDEARATNQTRFIRDDVQVMVATIAFGMGINKPDVRFVIHYDLPHNLERYYQESGR 372
Query: 603 AGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A C L+ N+ ++ L+ + + + A + L Y T CR I
Sbjct: 373 AGRDGEPAHCTLFFGAGNIRTIDYLIEQKPDPKEQRVARQQLRQVIDYAEGTD-CRRTIQ 431
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGI 719
+ YFGE F C CD C + P +++ EA + +A E+ D + G
Sbjct: 432 LRYFGERFKG-NCGNCDNCRN-PKPVEDWTIEAQKFLSCVARCKERFGMAHIID-VLRGS 488
Query: 720 KKQKF 724
+KQK
Sbjct: 489 RKQKI 493
>gi|405954059|gb|EKC21596.1| Werner syndrome ATP-dependent helicase-like protein [Crassostrea
gigas]
Length = 1136
Score = 172 bits (435), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 128/214 (59%), Gaps = 13/214 (6%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
+LKK+FG+S + Q + +++ L D V+ ATG GKSLC+Q P++ T K VVISPL
Sbjct: 255 VLKKYFGYSKFRPMQWKIINSVLNEKRDSCVVMATGYGKSLCYQFPSVFTQKTTVVISPL 314
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDN-KVEQKALRGMYSIIYVCPETVIR-LIKPLQR 280
ISLM DQ L + ACFLGS Q ++ +V Q RG Y ++Y+ PE + L+
Sbjct: 315 ISLMQDQVMGLQAANIEACFLGSAQENSTQVRQDLKRGKYRVLYITPEYASSGGVNHLKD 374
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L G+ L AIDE HCVS+WGHDFR YR L L+E F +P++ALTATA
Sbjct: 375 LDRDVGLDLIAIDEAHCVSQWGHDFRSAYRSLGQLKEAFP---------QVPVVALTATA 425
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
T +VR DI +SL + + + T F RPNL SV
Sbjct: 426 TQEVRLDICRSLKL-RDPSIICTGFDRPNLFLSV 458
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 107/181 (59%), Gaps = 10/181 (5%)
Query: 486 TDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNAS 545
TD +F+ + K + + DG TIIY PT+K T +A + G + +A Y+A
Sbjct: 462 TDTAFDLRSQMTKQGNKFNF------DGPTIIYCPTKKATNDVAAIVKGMNIPSAPYHAG 515
Query: 546 LPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGR 605
L ++ + H +F ++++V++AT+AFGMGIDK +VR++IHYG P+ +E+YYQE GRAGR
Sbjct: 516 LSQADRNKAHRQFVNDQVQVIIATVAFGMGIDKPDVRKVIHYGAPKDIESYYQEVGRAGR 575
Query: 606 DGHLADC-VLYANLSSMPT--LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEY 662
DG + C V Y + + + ++E + +ML +Y + T+ CR ++L+ +
Sbjct: 576 DGLPSQCHVFYTEKDFLTSRHFISEVQNEKFREHKMKMLGKMQQY-LKTTTCRRRLLLSH 634
Query: 663 F 663
F
Sbjct: 635 F 635
>gi|394988714|ref|ZP_10381549.1| ATP-dependent DNA helicase RecQ [Sulfuricella denitrificans skB26]
gi|393792093|dbj|GAB71188.1| ATP-dependent DNA helicase RecQ [Sulfuricella denitrificans skB26]
Length = 616
Score = 172 bits (435), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 131/218 (60%), Gaps = 15/218 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+L FG+S+ ++ Q+ + + D LVL TG GKSLC+Q+PALL V +V+SP
Sbjct: 7 QQILHDVFGYSAFRDEQQAIVEHVTSGGDALVLMPTGGGKSLCYQLPALLRHGVGIVVSP 66
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVI--RLIK 276
LI+LM DQ L + GV A FL S V + +RG I+YV PE ++ +
Sbjct: 67 LIALMQDQVDALKQLGVKAAFLNSSLAADAARDVFGRLMRGDLDILYVAPERLLMANFLS 126
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L+++ G+ALFAIDE HCVS+WGHDFRP+YR L+VL E F A +P +AL
Sbjct: 127 ALEQVQAGPGLALFAIDEAHCVSQWGHDFRPEYRELTVLHERFPA---------VPRIAL 177
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TATA R +I++ L + + +FV +SF RPN+R+ V
Sbjct: 178 TATADAPTRREIVERLALEQAHQFV-SSFDRPNIRYRV 214
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 86/168 (51%), Gaps = 4/168 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+ A +L G A Y+A L + F + ++VAT+AFGMG
Sbjct: 238 IVYCLSRKKVDETAAWLKEKGWDALPYHAGLDAATRNANQRRFLREEGVIMVATVAFGMG 297
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS---SMPTLLPSRRSED 632
IDK NVR + H P+S+E YYQE GRAGRDG AD + L SM +L S +
Sbjct: 298 IDKPNVRFVAHLDLPKSMEGYYQETGRAGRDGLPADAWMTYGLGDVVSMRQMLSSGDAPA 357
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVD 680
+ K+ D + CR + ++ YFGE+ + C CD C++
Sbjct: 358 ERKRVELQKLDALLGFCEATACRHQTILRYFGEEHPGD-CGQCDNCLE 404
>gi|428224630|ref|YP_007108727.1| ATP-dependent DNA helicase RecQ [Geitlerinema sp. PCC 7407]
gi|427984531|gb|AFY65675.1| ATP-dependent DNA helicase RecQ [Geitlerinema sp. PCC 7407]
Length = 741
Score = 172 bits (435), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 133/216 (61%), Gaps = 15/216 (6%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK FG+ S + Q+E + A L D +V+ TG GKSLCFQ+PALL V VV+SPLI+
Sbjct: 19 LKHFFGYESFRPGQREIVEAALDRRDVMVIMPTGGGKSLCFQLPALLNSGVSVVVSPLIA 78
Query: 225 LMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ + L K+GV A FL SG+ + + L G ++YV PE ++ + + L
Sbjct: 79 LMQDQVASLQKNGVGATFLNSSISGEEVRSRQNEILDGRIKLLYVAPERLLNEQFLLWLN 138
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ + G++ F IDE HCVS+WGHDFRP+YR+L +R+ F ++P+MALTAT
Sbjct: 139 DVRQQVGLSTFVIDEAHCVSEWGHDFRPEYRQLLQIRQRFP---------EVPVMALTAT 189
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
AT +VR+D+ + L + + + SF RPNL + V+
Sbjct: 190 ATDRVRQDMGEQLALRQPYVHI-ASFNRPNLYYEVR 224
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 134/272 (49%), Gaps = 26/272 (9%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G I+Y +R+ + L G++A Y+A L T F + + V+VATIA
Sbjct: 242 EGSCIVYCLSRRRVNELTTRLQQEGIEALPYHAGLSDDVRTENQTRFIRDDVRVIVATIA 301
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL------- 624
FGMGI+K +VR ++HY P+++EAYYQE+GRAGRDG A C+L+ + +L
Sbjct: 302 FGMGINKPDVRLVMHYDLPRNIEAYYQESGRAGRDGETAQCLLFYGPGDIKSLDWIIDQK 361
Query: 625 ---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
+ E + + A + L Y +T CR I + YFGE+F CQ CD C+
Sbjct: 362 VHPVTGEPLEQEQRIARQQLRQVIDYAEST-VCRRTIQLSYFGEEFPG-NCQNCDNCLH- 418
Query: 682 PPEMKNLKEEANILMQVIAAYNEQ--SNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-R 738
P +++ EA + +A E+ N + D + G K +K + + + I R
Sbjct: 419 PKPLEDWTIEAQKFLSCVARCRERFGVNYIID---VLRGSKNKKVLSNGHQALSTYGIGR 475
Query: 739 EQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
++S WR LAR + ++G + E D
Sbjct: 476 DRSVDA-------WRSLARTLIHQGLVDETSD 500
>gi|222109326|ref|YP_002551590.1| ATP-dependent DNA helicase recq [Acidovorax ebreus TPSY]
gi|221728770|gb|ACM31590.1| ATP-dependent DNA helicase RecQ [Acidovorax ebreus TPSY]
Length = 623
Score = 172 bits (435), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 131/224 (58%), Gaps = 19/224 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVI 219
+L FG+ + Q+ + +A D LVL TG GKSLC+Q+PA++ V VV+
Sbjct: 7 VLHDVFGYEQFRGPQQAIIDHVIAGGDALVLMPTGGGKSLCYQVPAIVRRDAGLGVTVVV 66
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVI--RL 274
SPLI+LMHDQ L + GV A FL S Q VE++ RG +++Y PE V R
Sbjct: 67 SPLIALMHDQVGALHEAGVEAAFLNSTLDWQQTQDVERRLARGEITLLYAAPERVTTDRF 126
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ L L + LFAIDE HCVS+WGHDFRP+YR+L+VL E + +P +
Sbjct: 127 LTLLDGLHARGQLGLFAIDEAHCVSQWGHDFRPEYRQLAVLHERYAG---------VPRI 177
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
ALTATA REDI++ L + + +FV +SF RPN+R+ ++ K
Sbjct: 178 ALTATADALTREDIVQGLRLQQARQFV-SSFDRPNIRYRIEEKK 220
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 100/198 (50%), Gaps = 12/198 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
++Y +RK +A+ LC G+ A Y+A LP ++ F V+VATIAFGMG
Sbjct: 240 VVYCQSRKRVEELAQALCDAGLTALPYHAGLPAEVRQQNQDRFLREDGIVMVATIAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT- 634
IDK +VR + H P+++E YYQE GRAGRDG AD + L ++ RR D++
Sbjct: 300 IDKPDVRFVAHVDMPKNIEGYYQETGRAGRDGLPADAWMAYGLQD---VVNQRRMIDESP 356
Query: 635 -----KQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLK 689
K R D + CR L+ YFGE + E C CD C++ PP + +
Sbjct: 357 AGEEFKAVMRGKLDALLALAEATDCRRVRLLGYFGE--ASEPCGNCDNCLN-PPAVWDGT 413
Query: 690 EEANILMQVIAAYNEQSN 707
+ A L+ I +E S
Sbjct: 414 DAARKLLSTIYRVHEASG 431
>gi|428771662|ref|YP_007163452.1| ATP-dependent DNA helicase RecQ [Cyanobacterium aponinum PCC 10605]
gi|428685941|gb|AFZ55408.1| ATP-dependent DNA helicase RecQ [Cyanobacterium aponinum PCC 10605]
Length = 707
Score = 172 bits (435), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 104/264 (39%), Positives = 146/264 (55%), Gaps = 32/264 (12%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LKK+FG+ S + Q+E + L + D L++ TG GKSLCFQ+PALL V +VISPLIS
Sbjct: 8 LKKYFGYDSFREGQEEIIQNALNNRDLLIIMPTGGGKSLCFQLPALLKKGVTIVISPLIS 67
Query: 225 LMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L +G+ A F+ S Q EQ L G ++Y+ PE +I + L
Sbjct: 68 LMQDQVMSLHDNGIGATFINSTLDFQEIKHREQLILSGKIKLLYLAPERLISEKFQSFLN 127
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+A++ IA FAIDE HC+S+WGHDFR +YR+L LR+ F IP+ ALTAT
Sbjct: 128 TVAKTNAIASFAIDEAHCISEWGHDFRLEYRQLRQLRQRFP---------QIPITALTAT 178
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLID----- 394
AT +V++DI++ L + + SF RPNL + V R K+++ Q++
Sbjct: 179 ATPRVQQDIIQQLRL-RNPIIRRFSFNRPNLYYEV-------RPREKRNYHQILQLINSL 230
Query: 395 -----IYTKKKKTGEKEKSAIPQD 413
IY +KT E + QD
Sbjct: 231 EGSGIIYCLARKTTEDLAYRLRQD 254
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 114/217 (52%), Gaps = 9/217 (4%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATI 570
+G IIY RK T +A L + A Y+ L ++R H + F + ++VAT+
Sbjct: 231 EGSGIIYCLARKTTEDLAYRLRQDNISALPYHGGLT-DEMRSHHQDCFIRDDARIMVATV 289
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS---SMPTLLPS 627
AFGMGI+K +VR +IH+ P+++E+YYQE+GRAGRDG A C+L N S + +
Sbjct: 290 AFGMGINKPDVRFVIHHDLPRNIESYYQESGRAGRDGEPAKCILLYNPSDEYKINYFIKQ 349
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKN 687
+ + ++ KQA L Y T+ CR + + YFGE + + C CD C++ P + +
Sbjct: 350 KENINEQKQAREQLKKVQEYA-ETNYCRRIVQLGYFGEKYKGD-CGGCDNCLN-PKKFVD 406
Query: 688 LKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKF 724
EA + +A E+ M+ I G K QK
Sbjct: 407 WTIEAQKFLSCVARTREKF-GMNHIINILRGAKNQKI 442
>gi|303287108|ref|XP_003062843.1| ATP-dependent DNA helicase [Micromonas pusilla CCMP1545]
gi|226455479|gb|EEH52782.1| ATP-dependent DNA helicase [Micromonas pusilla CCMP1545]
Length = 1049
Score = 172 bits (435), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 134/245 (54%), Gaps = 31/245 (12%)
Query: 153 IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT 212
+ D + + L ++FGHS + Q ++A ++ D V +TGSGKSLC+Q+PAL T
Sbjct: 84 VPPDLANALRATLSEYFGHSDFREGQMSVIAAAVSDRDSCVYWSTGSGKSLCYQLPALHT 143
Query: 213 GKVVVVISPLISLMHDQCSKLSKHGVT-----------ACFLGSGQPDNKVEQKALRGMY 261
GK +V+SPLISLM+DQ + L+ A FLGS Q D VE+ ALRG Y
Sbjct: 144 GKTTLVVSPLISLMNDQVTHLNNTAGASGMGKGDAFPLAAFLGSTQTDRSVEENALRGAY 203
Query: 262 SIIYVCPETVI-----------RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYR 310
++YV PE ++ + L+ + S+ + L AIDE HC+S+WGHDFR YR
Sbjct: 204 RVVYVTPEKLVGSFGDDTGGNGYFLSRLKEMVRSKKLGLVAIDEAHCLSQWGHDFRTSYR 263
Query: 311 RLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVL-TSFFRPN 369
L+ +R N ++P+MALTATA VREDI L + FV S RPN
Sbjct: 264 GLARVRAELAPNG------EVPIMALTATAVDAVREDIASVLELR--APFVAQNSCDRPN 315
Query: 370 LRFSV 374
L SV
Sbjct: 316 LAVSV 320
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 96/191 (50%), Gaps = 24/191 (12%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGF------GVKAAA--YNASLPKSQLRRVHTEFHENKLE 564
G IIY PT +E +A +L G K A Y+A + S+ RVH EF + +
Sbjct: 342 GSVIIYCPTVREVEQVASHLGNVFASRPDGAKNAVGTYHAQMSPSERERVHREFLTGRRK 401
Query: 565 VVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSM 621
VVVAT+AFGMGIDK ++R ++HYG P+++E YYQ+ GRAGRDG + +LY + S
Sbjct: 402 VVVATVAFGMGIDKPDIRLVMHYGAPKTMEEYYQQVGRAGRDGLPSKVEMLYGDGDFSKY 461
Query: 622 PTLLPSRRSEDQTKQAYRMLSDCF-RYGMNTSCCRAKILVEYFGED------------FS 668
+ + ++ + +D R+ CR ++ +FGE +
Sbjct: 462 GSDFYVGGLSETVRRTQKASTDALERFSREPLACRRAGILAHFGESPPESWPDSPDPAVA 521
Query: 669 HEKCQLCDVCV 679
+ C CD CV
Sbjct: 522 GKVCGTCDTCV 532
>gi|121603031|ref|YP_980360.1| ATP-dependent DNA helicase RecQ [Polaromonas naphthalenivorans CJ2]
gi|120592000|gb|ABM35439.1| ATP-dependent DNA helicase RecQ [Polaromonas naphthalenivorans CJ2]
Length = 639
Score = 172 bits (435), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 137/228 (60%), Gaps = 19/228 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVI 219
+L + FG+S + Q+ + +A D LVL TG GKSLC+QIPA+ V +VI
Sbjct: 24 VLGQVFGYSDFRGPQQAIVEHVIAGGDALVLMPTGGGKSLCYQIPAIARQNAGHGVTIVI 83
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETV--IRL 274
SPLI+LMHDQ L + GV+A FL S Q +++E++ LR +++Y PE + R+
Sbjct: 84 SPLIALMHDQVGALLEAGVSAAFLNSTQTFEESSQLEKQLLRNELTLLYAAPERINTPRM 143
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
L L E ++LFAIDE HCVS+WGHDFRP+YR LS+L E F D+P M
Sbjct: 144 KGLLASLHERGLLSLFAIDEAHCVSQWGHDFRPEYRSLSLLHETFP---------DVPRM 194
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
ALTATA R+D+++ L + F L+SF RPN+R+++ ++R
Sbjct: 195 ALTATADALTRQDMIERLKLEDARLF-LSSFDRPNIRYTIVEKTDATR 241
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 121/264 (45%), Gaps = 28/264 (10%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK IA L G+KA AY+A L ++ F V+VATIAFGMG
Sbjct: 257 IVYCQSRKRVEEIAGMLEDAGIKAMAYHAGLDAKLRQQRQDRFLREDGCVMVATIAFGMG 316
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR + H P+++E YYQE GRAGRDG AD + L ++ RR D ++
Sbjct: 317 IDKPDVRFVAHLDMPKNIEGYYQETGRAGRDGLPADAWMVYGLQD---VVNQRRMIDTSE 373
Query: 636 QAYRMLSDCFRYGMNT-------SCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
A R ++ + CR L+ YFGE + E C CD C+ PP + +
Sbjct: 374 VASEEFKAVMRGKLDALLTLAEGTRCRRVSLLGYFGE--ASEPCGNCDNCLT-PPAVWDA 430
Query: 689 KEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMD----RPNLKMFVSKIREQSQKY 744
E A ++ I Y Q S GI G MD +P K+ + S
Sbjct: 431 TEAARKMLSCI--YRVQQAS-----GISFG--AGHIMDILRGKPTEKVVQYGHDQLSTFG 481
Query: 745 LATDLL--WWRGLARIMENKGYIR 766
+ DL WRG+ R + +R
Sbjct: 482 IGADLAEPQWRGVLRQLIASNLVR 505
>gi|355697852|gb|EHH28400.1| Werner syndrome ATP-dependent helicase [Macaca mulatta]
Length = 1431
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 126/212 (59%), Gaps = 12/212 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D + + ATG GKSLCFQ P + GK+ +VISPLI
Sbjct: 539 LKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLI 598
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + CFLGS Q +N + L G Y I+Y+ PE I LQ+L
Sbjct: 599 SLMEDQVLQLKMSNIPTCFLGSAQSENVLTDIKL-GKYRIVYITPEYCSGNIGLLQQLEA 657
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GI L A+DE HC+S+WGHDFR +R+L L+ +P++ALTATAT
Sbjct: 658 DIGITLIAVDEAHCISEWGHDFRNSFRKLGSLKTALPM---------VPIVALTATATSS 708
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+REDI++ L++ + + + T F RPNL V+
Sbjct: 709 IREDIVRCLNL-RNPQIICTGFDRPNLYLEVR 739
Score = 108 bits (271), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 101/178 (56%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S+ + VH F ++++ V+ATIA
Sbjct: 763 EGPTIIYCPSRKMTEQVTAELRKLNLSCETYHAGMSFSRRKDVHHRFVRDEIQCVIATIA 822
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYANLSSMPTLLPSRRS 630
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C +L+A
Sbjct: 823 FGMGINKADIRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHILWAPADINLNXXXXXXX 882
Query: 631 EDQTKQAY--RMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
+ + Y +M++ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 883 XXEKFRLYKLKMMAKMEKY-LHSSRCRRQIILSHF-EDKQVQKASLGITGTEKCCDNC 938
>gi|75908908|ref|YP_323204.1| ATP-dependent DNA helicase RecQ [Anabaena variabilis ATCC 29413]
gi|75702633|gb|ABA22309.1| ATP-dependent DNA helicase RecQ [Anabaena variabilis ATCC 29413]
Length = 718
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 141/236 (59%), Gaps = 22/236 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK HFG+ + + Q++ + L + D +V+ TG GKSLCFQ+PAL+ + VV+SPLI+
Sbjct: 11 LKYHFGYDNFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALMKQGLTVVVSPLIA 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L + ++A FL S +V E+ L G ++YV PE ++ R + L
Sbjct: 71 LMQDQVEALRNNNISATFLNSSLNAYQVRSREEAILNGKVRLLYVAPERLLSERFLPFLD 130
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ E GI++FAIDE HCVS+WGHDFRP+YR+L LR+ + ++P++ALTAT
Sbjct: 131 LVNEKVGISIFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYP---------NVPVLALTAT 181
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDI 395
AT +VR DI++ L + K L SF R NL + V R K+ + +L+++
Sbjct: 182 ATDRVRSDIIQQLGL-KQPSIHLASFNRQNLYYEV-------RPKSKQAYAELLEL 229
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 142/277 (51%), Gaps = 21/277 (7%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
AE L ++++ +G IIY TRK+ + L + A +Y+A LP + + T F
Sbjct: 224 AELLELIRD--NEGSAIIYCLTRKKVEELTFKLQKDKISALSYHAGLPDDERSKNQTRFI 281
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
+ + V+VATIAFGMGI+K +VR ++H+ P++LE+YYQE+GRAGRDG + C ++ +
Sbjct: 282 RDDVRVMVATIAFGMGINKPDVRLVVHFDIPRNLESYYQESGRAGRDGEPSRCTIFFSFG 341
Query: 620 SMPTLLPS--RRSEDQ----TKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
+ T+ S ++++ Q KQ R + D Y T CR I + YFGE F+ C
Sbjct: 342 DIKTIEWSIEQKTDPQEQLIAKQQLRQMID---YAEGTD-CRRTIQLGYFGERFAG-NCG 396
Query: 674 LCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMF 733
CD C P M++ EA + +A E+ + D + G KK K + + K+
Sbjct: 397 NCDNC-RYPKPMQDWTIEAMKFLSCVARCKERFGMLHIID-VLRGAKKDKIIQYEHDKLS 454
Query: 734 VSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
I K D WR L R + ++G + + D
Sbjct: 455 TYGI----GKDRTVD--EWRTLGRSLLHQGLLEQTSD 485
>gi|255073857|ref|XP_002500603.1| predicted protein [Micromonas sp. RCC299]
gi|226515866|gb|ACO61861.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 390
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 133/220 (60%), Gaps = 25/220 (11%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L K++GH+ + Q E ++A + D V +TGSGKSLC+Q+PAL TGK +V+SPLIS
Sbjct: 1 LSKYYGHADFRPGQLEVVAATVQGRDSCVYWSTGSGKSLCYQLPALHTGKTSLVVSPLIS 60
Query: 225 LMHDQCSKL-----SKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
LM+DQ + + + G A FLGS Q D VE++ALRG + ++YV PE +L+ +
Sbjct: 61 LMNDQVTHMNNTAGADEGDLAAFLGSSQTDKSVEERALRGDFRVVYVTPE---KLVGDID 117
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+A + L A+DE HC+S+WGHDFR YR L+++R N ++P+MALTAT
Sbjct: 118 DMARDGKLGLVAVDEAHCLSQWGHDFRKSYRGLTLIRTQLSPNG------EVPVMALTAT 171
Query: 340 ATIQVREDI-----LKSLHMSKGTKFVLTSFFRPNLRFSV 374
A +VREDI LK H+++ S R NLR V
Sbjct: 172 AVEKVREDIKDVLALKRPHVAR------NSCDRTNLRILV 205
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 10/163 (6%)
Query: 513 GLTIIYVPTRKETLSIAKYLCG-FGVKAAA-----YNASLPKSQLRRVHTEFHENKLEVV 566
G ++Y T+++ IA L F + A Y+A L S+ H F ++VV
Sbjct: 227 GSVVVYCVTKRDAEDIATVLKNKFATQNIAAGVEVYHAGLAMSRRDATHKGFLTGSVKVV 286
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPT 623
VAT+AFGMGIDK ++R ++HYG P+++E YYQ+ GRAGRDG +D ++Y + S
Sbjct: 287 VATVAFGMGIDKPDIRLVMHYGAPKTMEEYYQQVGRAGRDGLPSDVEMIYGDGDFSRYSD 346
Query: 624 LLPSRRSEDQTKQAYRMLSDCF-RYGMNTSCCRAKILVEYFGE 665
+ + ++ + +D R+ + CR ++ +FGE
Sbjct: 347 EFYVGKLDAAARKTQKESTDALERFSRSREVCRRASILAHFGE 389
>gi|198276249|ref|ZP_03208780.1| hypothetical protein BACPLE_02441 [Bacteroides plebeius DSM 17135]
gi|198270691|gb|EDY94961.1| ATP-dependent DNA helicase RecQ [Bacteroides plebeius DSM 17135]
Length = 611
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 126/214 (58%), Gaps = 16/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG++S + Q++ +S L D LVL TG GKS+C+Q+PALL VV+SPLIS
Sbjct: 9 LKSYFGYTSFRPLQEKIISTILQKKDALVLMPTGGGKSMCYQLPALLMEGTTVVVSPLIS 68
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQ---KALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S D Q + L+G ++Y+ PE RL+ + L
Sbjct: 69 LMKDQVESLQANGIVARALNSTNDDATNAQLYFECLQGRVKLLYISPE---RLMSEMNYL 125
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
I+LFAIDE HC+S WGHDFRP+Y +L +R+ F ++P++ALTATA
Sbjct: 126 LRDINISLFAIDEAHCISHWGHDFRPEYTQLKAIRQYFP---------NVPVVALTATAD 176
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
REDI++ L M F+ +SF RPNL VK
Sbjct: 177 KITREDIIRQLEMRNPEIFI-SSFDRPNLSLEVK 209
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 122/218 (55%), Gaps = 16/218 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R T +A+ L G AAY+A + Q +F ++++++ ATIAFGMG
Sbjct: 234 IIYCMSRNGTEKVAQLLEKEGFDVAAYHAGMSNEQREITQDDFINDRVQIICATIAFGMG 293
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E +YQE GRAGRDG ++ +L+ + + +L SR + + +
Sbjct: 294 IDKSNVRWVIHYNLPKSIENFYQEIGRAGRDGLPSETLLFYSFGDI--ILLSRFAAESNQ 351
Query: 636 QAYRM--LSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEAN 693
Q + L+ +Y + CR +IL+ YFGE H+ C CDVC + PPE + +
Sbjct: 352 QGINLEKLNRMQQYA-ESDICRRRILLNYFGETMDHD-CGNCDVCKN-PPE----RFDGT 404
Query: 694 ILMQ----VIAAYNEQSNSMDDDDGIYSGIKKQKFMDR 727
I++Q IA ++Q + D I G Q+ M++
Sbjct: 405 IIVQKALSAIARADQQIGTRTLID-ILKGYASQEIMEK 441
>gi|257440203|ref|ZP_05615958.1| ATP-dependent DNA helicase RecQ [Faecalibacterium prausnitzii
A2-165]
gi|257197237|gb|EEU95521.1| ATP-dependent DNA helicase, RecQ family [Faecalibacterium
prausnitzii A2-165]
Length = 387
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/226 (42%), Positives = 133/226 (58%), Gaps = 18/226 (7%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+S+LKK FG+ S + Q+E +S LA D L + TG+GKS+C+Q+PALL + +V+SP
Sbjct: 5 HSILKKVFGYDSFRPGQEEIVSRLLAGQDVLAVMPTGAGKSICYQVPALLLPGITIVVSP 64
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKP- 277
L+SLM DQ L + GV A FL + DN+ + ++A G Y IIYV PE RL P
Sbjct: 65 LVSLMKDQVGALVQAGVAAAFLNNSLTDNQKALMLRRAREGWYKIIYVAPE---RLEMPG 121
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
QR A+ R I++ +DE HC+S+WG DFRP Y R+ + SL + A T
Sbjct: 122 FQRFAQEREISMVTVDEAHCISQWGQDFRPSYLRIKAF--------VDSLPKRPVVGAFT 173
Query: 338 ATATIQVREDILKSLHMSKGTKF-VLTSFFRPNLRFSVKHSKTSSR 382
ATAT VREDI H+ T + V TSF RPNL F+ + + S +
Sbjct: 174 ATATAHVREDI--RTHLELHTPYEVTTSFDRPNLYFATRRALPSEK 217
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 86/145 (59%), Gaps = 11/145 (7%)
Query: 478 HSPHRDRDTDRSFERTDLLNK-----PAERLSMLQEPL---EDGLTIIYVPTRKETLSIA 529
H+P+ + SF+R +L P+E+ +L E + D IIY T ++
Sbjct: 191 HTPY---EVTTSFDRPNLYFATRRALPSEKPKVLLELVLRERDNAGIIYCSTTRQVDETT 247
Query: 530 KYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW 589
+ L G++AAAY+A L R+ +F ++++++VAT AFGMGIDK NVR +IHY
Sbjct: 248 RLLQSRGIRAAAYHAKLDADTRRQNQDDFLYDRVQIMVATNAFGMGIDKPNVRFVIHYNM 307
Query: 590 PQSLEAYYQEAGRAGRDGHLADCVL 614
P+ LE+YYQEAGRAGRDG A C L
Sbjct: 308 PKDLESYYQEAGRAGRDGEPARCTL 332
>gi|221134099|ref|ZP_03560404.1| ATP-dependent DNA helicase [Glaciecola sp. HTCC2999]
Length = 596
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 132/219 (60%), Gaps = 19/219 (8%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+++ LK FG+S + Q+ + A LA DCLVL TG GKSLC+Q+PA++ + +V+S
Sbjct: 6 LHTTLKNTFGYSDFRKGQQAIIEASLAQQDCLVLMPTGGGKSLCYQVPAVINTGLTIVVS 65
Query: 221 PLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP 277
PLISLM DQ + G+ A + S G +V Q+ G I++V PE R+++P
Sbjct: 66 PLISLMQDQMEQCLAVGIRADMISSQLDGAEITQVYQRLHNGQTDILFVAPE---RILQP 122
Query: 278 --LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
++RL+E I+L A+DE HCVS WGHDFR DYR L LR+ F IP+MA
Sbjct: 123 YFIERLSE-LDISLIAVDEAHCVSHWGHDFRQDYRNLGQLRQIFPY---------IPIMA 172
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA I REDI LH++ L SF RPN+R++V
Sbjct: 173 LTATADIATREDIQTQLHLNH-PHVHLASFDRPNIRYTV 210
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 108/204 (52%), Gaps = 13/204 (6%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E++ E G IIY +R + + L G K AY+A L + + + +
Sbjct: 215 KPLEQIVRFIHAHE-GSGIIYCSSRNKVDEVRNKLYAKGFKCGAYHAGLTQEERAQAQRD 273
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++++VAT+AFGMGI+K NVR ++H+ P+S+EAYYQE GRAGRDG ++ +L
Sbjct: 274 FQNDNIDIMVATVAFGMGINKSNVRYVVHHDLPRSIEAYYQETGRAGRDGLASEALLLFD 333
Query: 616 ----ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEK 671
A + S R E + ++ M R+G + CR ++L+ YF E S +
Sbjct: 334 EKDAARIKQWIESSESHRIEVELEKFEAME----RFG-DAQTCRRQVLLNYFSEA-SQTQ 387
Query: 672 CQLCDVCVDGPPEMKNLKEEANIL 695
C CDVC+D P L+ +L
Sbjct: 388 CGNCDVCIDPPKHFDGLESAQKVL 411
>gi|195054415|ref|XP_001994120.1| GH17364 [Drosophila grimshawi]
gi|193895990|gb|EDV94856.1| GH17364 [Drosophila grimshawi]
Length = 1404
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 136/231 (58%), Gaps = 18/231 (7%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG S + Q + ++A L +DC VL TG GKSLC+Q+PA+LT V +VISPL SL+ D
Sbjct: 639 FGLKSFRPNQLQVINAALLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFD 698
Query: 229 QCSKLSKHGVTACFLGSGQP--DNKVEQKALRG---MYSIIYVCPETV---IRLIKPLQR 280
Q SKL+ + A + Q D + L G + ++YV PE + R L
Sbjct: 699 QVSKLASLDICAKSMSGEQSMEDTMAIYRDLEGHSPLVKLLYVTPEKISSSARFQDTLDH 758
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L+ + I+ F IDE HCVS+WGHDFRPDY++L +LR+ F ++P MALTATA
Sbjct: 759 LSANNFISRFVIDEAHCVSQWGHDFRPDYKKLGILRKRFP---------NVPTMALTATA 809
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQ 391
T +VR+DIL+ L+++ K+ L+SF R NLRF V K +S + F Q
Sbjct: 810 TPRVRQDILQQLNLTH-CKWFLSSFNRSNLRFQVLPKKGASTLDEMRSFIQ 859
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 99/174 (56%), Gaps = 10/174 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RKE +A + G++A AY+A L + ++ NK+ V+ ATIAFGMG
Sbjct: 868 IIYCLSRKECDEVAHKMSAAGIRAVAYHAGLTDTARESRQKDWITNKVRVICATIAFGMG 927
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL----PSRRSE 631
IDK +VR ++HY P+S+E YYQEAGRAGRDG +ADC+LY N S M L R E
Sbjct: 928 IDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGEIADCILYYNYSDMMRLKKMMDADRALE 987
Query: 632 DQTKQAY-RMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-----QLCDVCV 679
K+ + L Y N + CR ++YFGE F+ E+C CD C+
Sbjct: 988 YHVKKIHIDNLHRIVGYCENITDCRRAQQLDYFGEHFTSEQCLENRRTACDNCL 1041
>gi|355779620|gb|EHH64096.1| hypothetical protein EGM_17222, partial [Macaca fascicularis]
Length = 1237
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 126/212 (59%), Gaps = 12/212 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D + + ATG GKSLCFQ P + GK+ +VISPLI
Sbjct: 344 LKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLI 403
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + CFLGS Q +N + L G Y I+Y+ PE I LQ+L
Sbjct: 404 SLMEDQVLQLKMSNIPTCFLGSAQSENVLTDIKL-GKYRIVYITPEYCSGNIGLLQQLEA 462
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GI L A+DE HC+S+WGHDFR +R+L L+ +P++ALTATAT
Sbjct: 463 DIGITLIAVDEAHCISEWGHDFRNSFRKLGSLKTALPM---------VPIVALTATATSS 513
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+REDI++ L++ + + + T F RPNL V+
Sbjct: 514 IREDIVRCLNL-RNPQIICTGFDRPNLYLEVR 544
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 106/178 (59%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S+ + VH F ++++ V+ATIA
Sbjct: 569 EGPTIIYCPSRKMTEQVTAELRKLNLSCETYHAGMSFSRRKDVHHRFVRDEIQCVIATIA 628
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C +L+ A+++ LL
Sbjct: 629 FGMGINKADIRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHILWAPADINLNRHLLTEI 688
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
R+E +M++ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 689 RNEKFRLYKLKMMAKMEKY-LHSSRCRRQIILSHF-EDKQVQKASLGITGTEKCCDNC 744
>gi|298675436|ref|YP_003727186.1| ATP-dependent DNA helicase RecQ [Methanohalobium evestigatum
Z-7303]
gi|298288424|gb|ADI74390.1| ATP-dependent DNA helicase RecQ [Methanohalobium evestigatum
Z-7303]
Length = 596
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/257 (39%), Positives = 149/257 (57%), Gaps = 29/257 (11%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L K+FG+ ++ QK+ ++ L D V+ TG GKSLC+Q+PALL V +V+SPLI
Sbjct: 4 ILHKYFGYEEFRSHQKDIITDILDKKDTFVVMPTGGGKSLCYQLPALLMEGVTIVVSPLI 63
Query: 224 SLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +G++A L S Q N++ L ++Y+ PE + + K L
Sbjct: 64 SLMKDQVDELRSNGISAACLNSTLGYQESNQICNDLLYNRIDVLYITPER-LTMSKTLDF 122
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L ES I LFAIDE HC+S+WG DFRP+Y RL++L++ F DIPL+ALTATA
Sbjct: 123 L-ESVNINLFAIDEAHCISEWGQDFRPEYLRLNMLKKKFP---------DIPLIALTATA 172
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR--ASYKKD--------FC 390
T +V+ D++ L + +++ +SF R NL + V+H K + + Y K +C
Sbjct: 173 TPRVQNDVISLLELEDCRRYI-SSFNRDNLYYEVRHKKDAYKQMVRYLKTHRKYNGIIYC 231
Query: 391 Q----LIDIYTKKKKTG 403
Q + D+Y K KK G
Sbjct: 232 QSRRAVEDLYNKLKKEG 248
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 111/215 (51%), Gaps = 6/215 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R+ + L G + Y+A LP F + ++++VATIAFGMG
Sbjct: 228 IIYCQSRRAVEDLYNKLKKEGFRVLPYHAGLPAKIREENQESFIRDDVQIIVATIAFGMG 287
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSED 632
I+K NVR +IHY P++LE YYQ+ GR GRDG DC+L Y + + + + +
Sbjct: 288 INKPNVRFVIHYDLPKNLENYYQQTGRGGRDGLDCDCILFFSYGDRYKIEYFINQKSRKS 347
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ A L+ Y ++ CR K+L+ YFGEDF + C CDVC++ P EM + A
Sbjct: 348 ERDIALSKLNMMIDY-CESNVCRRKLLLNYFGEDFDVQNCGKCDVCLE-PKEMTDGTATA 405
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDR 727
+ + N Q ++ + +G K +K D+
Sbjct: 406 KTFLSCVDELN-QKYGLNHVVDVLTGSKTKKITDK 439
>gi|95930254|ref|ZP_01312992.1| ATP-dependent DNA helicase RecQ [Desulfuromonas acetoxidans DSM
684]
gi|95133717|gb|EAT15378.1| ATP-dependent DNA helicase RecQ [Desulfuromonas acetoxidans DSM
684]
Length = 598
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 132/215 (61%), Gaps = 19/215 (8%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+ FG + Q++ + +A DC VL TG GKSLC+QIPAL V +V+SPLIS
Sbjct: 7 LQNTFGFREFREPQQQIIETLIAGQDCFVLMPTGGGKSLCYQIPALHRQGVAIVVSPLIS 66
Query: 225 LMHDQCSKLSKHGVT-ACFLGS--GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP--LQ 279
LM DQ L+ +GV+ AC+ S Q V + R ++YV PE RL+ P L+
Sbjct: 67 LMKDQVDALNANGVSAACYNSSLAAQEARDVLSQLHRQQLDLLYVAPE---RLLSPDFLE 123
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
RL + + IAL A+DE HCVS+WGHDFRP+Y +L LR+ F D P++ALTAT
Sbjct: 124 RLHDIK-IALIAVDEAHCVSQWGHDFRPEYVQLGQLRDQFP---------DTPMIALTAT 173
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
A +Q R+DI++ L + KF+ +SF RPN+R++V
Sbjct: 174 ADMQTRQDIVERLRLHHARKFI-SSFDRPNIRYTV 207
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 150/294 (51%), Gaps = 19/294 (6%)
Query: 481 HRDRDTDRSFERTDLL------NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG 534
H R SF+R ++ KP +L + + I+Y +RK IA L
Sbjct: 189 HHARKFISSFDRPNIRYTVVDKQKPIVQLEQFLDQHRNEAGIVYALSRKRVEEIAAKLVD 248
Query: 535 FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLE 594
G+ AAAY+A LP Q V F + ++VVVAT+AFGMGIDK NVR ++HY P+++E
Sbjct: 249 RGIVAAAYHAGLPDRQRHEVQEAFLRDDIQVVVATVAFGMGIDKSNVRFVVHYDLPKNIE 308
Query: 595 AYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNT 651
+YYQE GRAGRDG A+ +L Y +++ L+ + DQ + L+ Y
Sbjct: 309 SYYQETGRAGRDGLPAEALLLFGYGDIAIARGLIEKGGNPDQVRIELHKLNAMVSYAEPL 368
Query: 652 SCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDD 711
+ CR + L+ YFGE H+ C CD+C++ PPE N E+A ++ + ++ +
Sbjct: 369 T-CRRRALLGYFGETLDHD-CGNCDLCLN-PPERYNATEDAQKVLSCVYRVGQRFGAKHV 425
Query: 712 DDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYI 765
D + G Q+ +D + K+ I ++D+ W GL R + + GY+
Sbjct: 426 ID-VLRGSSGQRVLDLGHDKLSTYGIGADQ----SSDV--WGGLIRQLVHLGYL 472
>gi|255037625|ref|YP_003088246.1| ATP-dependent DNA helicase RecQ [Dyadobacter fermentans DSM 18053]
gi|254950381|gb|ACT95081.1| ATP-dependent DNA helicase RecQ [Dyadobacter fermentans DSM 18053]
Length = 717
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 127/213 (59%), Gaps = 15/213 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LKK+FG+ S + Q E + +A+ DC+VL TG GKS+CFQIPA+L + +VISPLI+
Sbjct: 9 LKKYFGYDSFRPQQSEIIDTIMANRDCMVLMPTGGGKSVCFQIPAVLRDGLTIVISPLIA 68
Query: 225 LMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A FL SG +++ + G ++Y+ PE + L
Sbjct: 69 LMKDQVEALRGNGINAAFLNSTISGAEQDQIMWQIRLGELKLLYIAPERL--FAGNTFDL 126
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+ LFAIDE HC+S WGHDFRP+YR+L++L+ F D+P++ALTATA
Sbjct: 127 LREWNVTLFAIDESHCISSWGHDFRPEYRQLNLLKLRFP---------DVPIVALTATAD 177
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
R DILK L++ F+ +SF RPNL +V
Sbjct: 178 RVTRRDILKQLNIEHAETFI-SSFDRPNLSLNV 209
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 109/199 (54%), Gaps = 10/199 (5%)
Query: 489 SFERTDL-LN-----KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R +L LN K E++ E IIY +RK T ++A L G + A Y
Sbjct: 199 SFDRPNLSLNVLPGRKRIEQIQRFVNKHEGQPGIIYCLSRKGTETVAASLQKAGFRVAYY 258
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A +P + +V F + ++++VATIAFGMGIDK NVR +IHY P ++E++YQE GR
Sbjct: 259 HAGMPGDKRSQVQENFLRDDIQIIVATIAFGMGIDKSNVRWVIHYNLPSNVESFYQEIGR 318
Query: 603 AGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLS---DCFRYGMNTSCCRAKIL 659
AGRDG AD VL+ + + T + DQ+ + +L + + CR +IL
Sbjct: 319 AGRDGASADTVLFYSYLDIITRQDMINNSDQSAEQKELLHAKLNRMKQYAEADICRRRIL 378
Query: 660 VEYFGEDFSHEKCQLCDVC 678
+ YF E H+ C CDVC
Sbjct: 379 LSYFNEPVDHD-CGNCDVC 396
>gi|109086093|ref|XP_001085031.1| PREDICTED: Werner syndrome ATP-dependent helicase-like [Macaca
mulatta]
Length = 1432
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 126/212 (59%), Gaps = 12/212 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D + + ATG GKSLCFQ P + GK+ +VISPLI
Sbjct: 539 LKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLI 598
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + CFLGS Q +N + L G Y I+Y+ PE I LQ+L
Sbjct: 599 SLMEDQVLQLKMSNIPTCFLGSAQSENVLTDIKL-GKYRIVYITPEYCSGNIGLLQQLEA 657
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GI L A+DE HC+S+WGHDFR +R+L L+ +P++ALTATAT
Sbjct: 658 DIGITLIAVDEAHCISEWGHDFRNSFRKLGSLKTALPM---------VPIVALTATATSS 708
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+REDI++ L++ + + + T F RPNL V+
Sbjct: 709 IREDIVRCLNL-RNPQIICTGFDRPNLYLEVR 739
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 107/178 (60%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S+ + VH +F ++++ V+ATIA
Sbjct: 764 EGPTIIYCPSRKMTEQVTAELRKLNLSCETYHAGMSFSRRKDVHHKFVRDEIQCVIATIA 823
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C +L+ A+++ LL
Sbjct: 824 FGMGINKADIRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHILWAPADINLNRHLLTEI 883
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
R+E +M++ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 884 RNEKFRLYKLKMMAKMEKY-LHSSRCRRQIILSHF-EDKQVQKASLGITGTEKCCDNC 939
>gi|149371063|ref|ZP_01890658.1| ATP-dependent DNA helicase recQ [unidentified eubacterium SCB49]
gi|149355849|gb|EDM44407.1| ATP-dependent DNA helicase recQ [unidentified eubacterium SCB49]
Length = 697
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 132/235 (56%), Gaps = 17/235 (7%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
+D + SLLK HFG+ S + Q+E ++ L D L + TG GKSLCFQ+PAL
Sbjct: 3 TDQSTSIVSLLKTHFGYDSFRPNQEEIINTVLEAKDVLAIMPTGGGKSLCFQLPALALNG 62
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETV 271
+VISPLI+LM DQ L+ +G++A + S QP + + +K + +IYV PE++
Sbjct: 63 TAIVISPLIALMKDQVDALNANGISAAYYNSTQPQEEQAAILEKLITRQLKLIYVAPESI 122
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
L L ++ I L A+DE HC+S WGHDFRP Y +LS L++ F
Sbjct: 123 WSLTNHLSKIE----INLIAVDEAHCISSWGHDFRPAYTQLSRLKQEFPGT--------- 169
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYK 386
P++ALTATA ++DIL L +S +FV +SF RPN+ V+ + YK
Sbjct: 170 PIIALTATADRATQDDILDQLKISNAKRFV-SSFDRPNIYLDVRPGQNRINHIYK 223
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 96/171 (56%), Gaps = 10/171 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK T SI L G AAAY+A L ++ +F ++ ++VATIAFGMG
Sbjct: 234 IIYCLSRKSTESITAKLKTKGYDAAAYHAGLSAEDRSQIQEDFINDRTPIIVATIAFGMG 293
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+++E YYQE GR GRDG A +++ + + + L+ + +E
Sbjct: 294 IDKSNVRWVIHYNMPKNIEGYYQEIGRGGRDGLKARALMFYSYADV--LMLRKFAEGTPT 351
Query: 636 QAYRMLS----DCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
Q +++ F +N CR K L+ YFGE E C CD+C + P
Sbjct: 352 QEFQLAKLERMQQFSESLN---CRRKALLSYFGEQLI-EDCGNCDICKNPP 398
>gi|319957274|ref|YP_004168537.1| ATP-dependent DNA helicase recq [Nitratifractor salsuginis DSM
16511]
gi|319419678|gb|ADV46788.1| ATP-dependent DNA helicase RecQ [Nitratifractor salsuginis DSM
16511]
Length = 594
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 134/240 (55%), Gaps = 22/240 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK+HFGH + Q+EA+ A L+ D L++ TG GKSLC+Q+P L+ V +V+SPL+
Sbjct: 6 ILKRHFGHQGFRPLQEEAVDAILSRRDLLMILPTGGGKSLCYQLPTLMMPGVTIVVSPLL 65
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQ---PDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LMHDQ + L + G+ A LGS Q + ++ RG ++YV PE + +
Sbjct: 66 ALMHDQVTALLEMGIPAAMLGSMQSFEEQQETVRRLRRGELKLLYVAPERLNNDF--FSQ 123
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L + I F IDE HCVS+WGH+FR DYRRLS+LRE + +P+ A TATA
Sbjct: 124 LLSTLPINFFVIDEAHCVSEWGHEFREDYRRLSLLRERYP---------QVPIAAFTATA 174
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKK 400
T +V DI L + + V S +R NL S +H RA QL+D+ + K
Sbjct: 175 TREVEADIASQLGLRDPVR-VRGSLYRENLTVSARHRVGDGRA-------QLLDLLSAHK 226
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 103/184 (55%), Gaps = 11/184 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+T S+A +L G AA ++A L + RRV+ EF +K+E VVAT+AFGMG
Sbjct: 231 IVYTLSRKQTESLADHLRAKGYSAATFHAGLSAEERRRVYEEFVADKIETVVATVAFGMG 290
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK N+R + H P+S+E YYQE GRAGRDG A+ +L L LL RR D+
Sbjct: 291 IDKSNIRYVAHMSLPKSVENYYQEIGRAGRDGLEAETLL---LFGAQDLLMQRRFIDELP 347
Query: 636 Q------AYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLK 689
+ AY L +R ++ CR K L +YFGE E + CD C+ E +
Sbjct: 348 ETPYKAHAYAKLEKLWRL-VSGEACRHKALADYFGETLP-ECGERCDNCLAPAVERLEIT 405
Query: 690 EEAN 693
E A
Sbjct: 406 EAAR 409
>gi|332707801|ref|ZP_08427828.1| ATP-dependent DNA helicase RecQ [Moorea producens 3L]
gi|332353504|gb|EGJ33017.1| ATP-dependent DNA helicase RecQ [Moorea producens 3L]
Length = 709
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/233 (40%), Positives = 137/233 (58%), Gaps = 18/233 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK FGH + Q++ + L + D L++ TG GKSLC+Q+PALL + VV+SPLIS
Sbjct: 11 LKHFFGHDCFRPGQQQIIEEALQNQDLLIIMPTGGGKSLCYQLPALLKPGLTVVVSPLIS 70
Query: 225 LMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ + L +G+ A F+ S Q E L G ++YV PE ++ + I L
Sbjct: 71 LMQDQVTSLEDNGIGATFINSTLSFQQMRSREAAILEGKIKLLYVSPERLLAEQFIPFLD 130
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
R+ GI FAIDE HCVS+WGHDFRPDYR+L +LR + ++ ++ALTAT
Sbjct: 131 RVRSQIGIPTFAIDEAHCVSQWGHDFRPDYRQLKLLRNRYPNSS---------VLALTAT 181
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQL 392
AT +V++DI++ L + + K + SF RPNL + V + R SY++ Q+
Sbjct: 182 ATNRVQQDIIQQLEL-RQPKVHIASFNRPNLYYDV---QPKQRQSYQQLLKQI 230
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 119/226 (52%), Gaps = 12/226 (5%)
Query: 489 SFERTDLLN--KPAERLS----MLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF R +L +P +R S + Q G I+Y +R+ +A L G+ A Y
Sbjct: 205 SFNRPNLYYDVQPKQRQSYQQLLKQIRSHQGSGIVYCTSRRSVEEVAFRLQNDGISALPY 264
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+ + F + + V+VAT+AFGMGI+K +VR +IHY P+++E+YYQE+GR
Sbjct: 265 HGGMTDKARATNQNRFIRDDVRVIVATVAFGMGINKPDVRFVIHYDLPRNIESYYQESGR 324
Query: 603 AGRDGHLADC-VLY--ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A C VLY +++S + L+ + + + AY+ L+ Y T CR +IL
Sbjct: 325 AGRDGEPATCTVLYSASDISKLHYLIDQKPDPKEQRIAYQQLNQIVDYAEGTD-CRRRIL 383
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQ 705
+ YFGE F C+ CD C P +++ EA + +A E+
Sbjct: 384 LGYFGERFPG-NCEKCDNCC-YPKPLEDWTIEAQKFLSCVARCRER 427
>gi|307152715|ref|YP_003888099.1| RecQ family ATP-dependent DNA helicase [Cyanothece sp. PCC 7822]
gi|306982943|gb|ADN14824.1| ATP-dependent DNA helicase, RecQ family [Cyanothece sp. PCC 7822]
Length = 717
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 148/256 (57%), Gaps = 25/256 (9%)
Query: 156 DWEVKVNSL---LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT 212
D ++NSL LK++FG+ + + Q++ + L + D LV+ TG GKSLCFQ+PALL
Sbjct: 8 DMMYQLNSLETALKQYFGYDNFRPGQRQIIEEALQNRDLLVIMPTGGGKSLCFQLPALLK 67
Query: 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPE 269
+ VV+SPLISLM DQ L +G+ A FL S +++ E L+ ++YV PE
Sbjct: 68 PGLTVVVSPLISLMQDQVDALLDNGIGATFLNSSLGLSEIRSREMAILKNKIKLLYVAPE 127
Query: 270 TVI--RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
++ + L ++A GI+ FAIDE HCVS+WGHDFRP+YR+L LR+ + +
Sbjct: 128 RLLSEKFTPFLDKIALDVGISAFAIDEAHCVSEWGHDFRPEYRQLRQLRQRYPS------ 181
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKK 387
+P+ LTATAT +V+EDI+ L + K + SF RPNL + V R ++
Sbjct: 182 ---VPMFGLTATATKRVQEDIIVQLGL-KNPGVHIASFNRPNLYYDV-------RPKQQR 230
Query: 388 DFCQLIDIYTKKKKTG 403
+ QL+ +K +G
Sbjct: 231 SYDQLLKYIRTQKGSG 246
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 95/176 (53%), Gaps = 5/176 (2%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+ G I+Y +R+ IA L G+ A Y+A + T F + +V+VATI
Sbjct: 242 QKGSGIVYCLSRRNVDEIAFRLQKDGISALPYHAGMTDEARTLNQTRFIRDDAQVMVATI 301
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPS 627
AFGMGI+KL+VR ++H+ P++LE+YYQE+GRAGRDG A C + + +L + ++
Sbjct: 302 AFGMGINKLDVRFVVHFDLPRNLESYYQESGRAGRDGEPAKCTIFLGFGDLKKIEYIIEQ 361
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPP 683
+ + + K A + L Y T CR I++ YFGE F C CD C P
Sbjct: 362 KSNPQEKKIAQQQLRQVINYAEGTE-CRRTIVLRYFGERF-QGNCDNCDNCRHPQP 415
>gi|407769058|ref|ZP_11116435.1| ATP-dependent DNA helicase RecQ [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407287978|gb|EKF13457.1| ATP-dependent DNA helicase RecQ [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 616
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 133/222 (59%), Gaps = 19/222 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L++ FG+ S + Q E + +A +D LVL TG GKSLC+QIPAL +V+SPLI
Sbjct: 22 VLREVFGYDSFRGQQAEIIDHVIAGNDALVLMPTGGGKSLCYQIPALCRSGTAIVVSPLI 81
Query: 224 SLMHDQCSKLSKHGVTACFLGSG-QPD--NKVEQKALRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ LS+ GV A F+ S PD ++E +A+ G ++YV PE R + L
Sbjct: 82 ALMKDQVDALSQLGVKAAFINSTLSPDAAREIETRAIDGDIDLLYVAPERFATDRFLNLL 141
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
R++ I+LFAIDE HCVS+WGHDFRP+YRRL +L F +P +ALTA
Sbjct: 142 DRIS----ISLFAIDEAHCVSQWGHDFRPEYRRLDLLPTRFP---------HVPRVALTA 188
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380
TA R+DI ++LH++ F LT F RPN+ + ++ S
Sbjct: 189 TADTPTRKDIAENLHLTNAQCF-LTGFDRPNITYRIETKGNS 229
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 105/183 (57%), Gaps = 8/183 (4%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE--FHE 560
LS L + I+Y +R++T +A++L G A Y+A L + + R++H + E
Sbjct: 234 LSFLNREHPEDAGIVYCLSRRKTEDVAQWLTDNGRPALPYHAGLTQ-ETRQLHQDRFLRE 292
Query: 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS- 619
+ L ++ AT+AFGMGIDK NVR + H P+S+EAYYQE GRAGRDG A+ + +LS
Sbjct: 293 DGL-IICATVAFGMGIDKPNVRFVAHLNLPKSMEAYYQETGRAGRDGLPANAWMNYDLSD 351
Query: 620 --SMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDV 677
S+ ++L S + D K+ D T+ CR ++++ YFGE+ + C CD
Sbjct: 352 IVSIRSMLASSDAPDSQKRIESRKLDALVGLAETTRCRRQVILSYFGEE-DTKPCGNCDT 410
Query: 678 CVD 680
C++
Sbjct: 411 CLE 413
>gi|423345823|ref|ZP_17323512.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae CL03T12C32]
gi|409221558|gb|EKN14507.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae CL03T12C32]
Length = 609
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 127/216 (58%), Gaps = 16/216 (7%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
SLLK+ FG++S + Q E + L D LVL TG GKS+CFQ+PA+ +V+SPL
Sbjct: 6 SLLKRFFGYTSFRPLQAEIIQRTLQKEDSLVLMPTGGGKSICFQLPAIYMPGTAIVVSPL 65
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
I+LM DQ L +G+ A L S P+ ++V Q ++G ++Y+ PE + I L
Sbjct: 66 IALMKDQVEGLIANGIPAATLNSMMPEEERHRVRQLCIQGKVKLLYISPEGI---ISELH 122
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L I+L AIDE HC+S WGHDFRP+Y +LSVL+ENF +P++ALTAT
Sbjct: 123 WLLPRIDISLIAIDEAHCISHWGHDFRPEYTQLSVLKENFPK---------VPIIALTAT 173
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A R DIL L + F+ +SF RPNL +++
Sbjct: 174 ADKITRTDILNQLKLRDPKTFI-SSFDRPNLSLTIR 208
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 110/184 (59%), Gaps = 11/184 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R T S+ + L + ++A AY+A L + + +F +++ VV AT+AFGMG
Sbjct: 233 IIYCMSRNSTESLVEELSEYSIRAVAYHAGLSSDKREKAQDDFINDRVNVVCATVAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSED--Q 633
IDK NVR +IHY P S+E YYQE GRAGRDG +D +L+ ++ + LL R +E+ Q
Sbjct: 293 IDKSNVRWVIHYNMPASIENYYQEIGRAGRDGMKSDTLLFYSVGDI--LLLRRFAEESGQ 350
Query: 634 TKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEAN 693
+ + L+ RY CR +IL+ YFGE+ + + C CDVC PP+ + + +
Sbjct: 351 KDVSLQKLNRMRRY-CEADICRRRILLSYFGEE-TDKDCGNCDVC-KNPPQ----RFDGS 403
Query: 694 ILMQ 697
IL+Q
Sbjct: 404 ILVQ 407
>gi|423722012|ref|ZP_17696188.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae CL09T00C40]
gi|409242714|gb|EKN35474.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae CL09T00C40]
Length = 609
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 127/216 (58%), Gaps = 16/216 (7%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
SLLK+ FG++S + Q E + L D LVL TG GKS+CFQ+PA+ +V+SPL
Sbjct: 6 SLLKRFFGYTSFRPLQAEIIQRTLQKEDSLVLMPTGGGKSICFQLPAIYMPGTAIVVSPL 65
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
I+LM DQ L +G+ A L S P+ ++V Q ++G ++Y+ PE + I L
Sbjct: 66 IALMKDQVEGLIANGIPAATLNSMMPEEERHRVRQLCIQGKVKLLYISPEGI---ISELH 122
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L I+L AIDE HC+S WGHDFRP+Y +LSVL+ENF +P++ALTAT
Sbjct: 123 WLLPRIDISLIAIDEAHCISHWGHDFRPEYTQLSVLKENFPK---------VPIIALTAT 173
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A R DIL L + F+ +SF RPNL +++
Sbjct: 174 ADKITRTDILNQLKLRDPKTFI-SSFDRPNLSLTIR 208
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 110/184 (59%), Gaps = 11/184 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R T S+ + L + ++A AY+A L + + +F +++ VV AT+AFGMG
Sbjct: 233 IIYCMSRNSTESLVEELSEYSIRAVAYHAGLSSDKREKAQDDFINDRVNVVCATVAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSED--Q 633
IDK NVR +IHY P S+E YYQE GRAGRDG +D +L+ ++ + LL R +E+ Q
Sbjct: 293 IDKSNVRWVIHYNMPASIENYYQEIGRAGRDGMKSDTLLFYSVGDI--LLLRRFAEESGQ 350
Query: 634 TKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEAN 693
+ + L+ RY CR +IL+ YFGE+ + + C CDVC PP+ + + +
Sbjct: 351 KDVSLQKLNRMRRY-CEADICRRRILLSYFGEE-TDKDCGNCDVC-KNPPQ----RFDGS 403
Query: 694 ILMQ 697
IL+Q
Sbjct: 404 ILVQ 407
>gi|432099984|gb|ELK28878.1| Werner syndrome ATP-dependent helicase [Myotis davidii]
Length = 1398
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 127/211 (60%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + G + +VISPLI
Sbjct: 497 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYVGGIGLVISPLI 556
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L ++ACFLGS Q N ++ L G Y I+Y+ PE + LQ+L
Sbjct: 557 SLMEDQVLQLRMSNISACFLGSAQSQNVLKDVKL-GKYRIVYLTPEFCSGNLYLLQQLQA 615
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GI L A+DE HC+S+WGHDFR +R L L+ F + +P++ALTATA+
Sbjct: 616 DIGITLIAVDEAHCISEWGHDFRNSFRELGSLKAAFPS---------VPIVALTATASSS 666
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+REDI++ L++ K + T F RPNL V
Sbjct: 667 IREDIVRCLNL-KNPQITCTGFDRPNLYLEV 696
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 101/181 (55%), Gaps = 19/181 (10%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S + VH +F ++++ VVATIA
Sbjct: 722 EGPTIIYCPSRKMTEQVTVELRKLNLACGTYHAGMDNSSRKEVHHKFMRDEIQCVVATIA 781
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSE 631
FGMGI+K +VR++IHYG P+ +E+YYQE GRAGRDG + C L + + L R
Sbjct: 782 FGMGINKADVRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWTPADI--CLNRHRLN 839
Query: 632 DQTKQAYR-----MLSDCFRYGMNTSCCRAKILVEYFGED---------FSHEKCQLCDV 677
+ + +R M++ +Y +++S CR ++++ +F + EKC CD
Sbjct: 840 EIHNEKFRLYKLKMMAKMEKY-LHSSRCRRQLILSHFEDKQLRKASLGIMGTEKC--CDN 896
Query: 678 C 678
C
Sbjct: 897 C 897
>gi|350559365|ref|ZP_08928205.1| ATP-dependent DNA helicase RecQ [Thioalkalivibrio thiocyanoxidans
ARh 4]
gi|349781633|gb|EGZ35916.1| ATP-dependent DNA helicase RecQ [Thioalkalivibrio thiocyanoxidans
ARh 4]
Length = 642
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/267 (38%), Positives = 148/267 (55%), Gaps = 29/267 (10%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L + FG+S + Q+E + D LVL TG GKSLC+QIPAL+ VVISPLI
Sbjct: 41 ILSEVFGYSGFRGRQREIIDCVAGGADALVLMPTGGGKSLCYQIPALMREGCGVVISPLI 100
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LM DQ + L + GV A L S +P ++ E+ L G ++Y+ PE ++ L + L+
Sbjct: 101 ALMQDQVAALRQSGVRAAALNSAEPIARIQEAERALLDGRLDLLYIAPERLM-LPRTLEL 159
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
LA +R +ALFAIDE HCVS+WGHDFRP+Y +LS+L E F +P +ALTATA
Sbjct: 160 LARAR-VALFAIDEAHCVSQWGHDFRPEYIQLSLLAERFPG---------VPRLALTATA 209
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKK 400
R +I+ L + + +FV + F RPN+R+ + S S + + I +++
Sbjct: 210 DAPTRREIVTRLGLERARQFV-SRFDRPNIRYRIAQSDAGG-GSARDRLLRFI----RQE 263
Query: 401 KTGE---------KEKSAIPQDLDDQS 418
GE K AI Q L DQ
Sbjct: 264 HPGEAGIVYCLSRKRVEAIAQWLADQG 290
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 105/202 (51%), Gaps = 7/202 (3%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566
+ P E G I+Y +RK +IA++L G++A Y+A L ++ R F ++
Sbjct: 263 EHPGEAG--IVYCLSRKRVEAIAQWLADQGLEALPYHAGLSAAERDRNQKRFLTGDGVIM 320
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL-- 624
VATIAFGMGIDK NVR + H P+S+EAYYQE GRAGRDG AD + L + TL
Sbjct: 321 VATIAFGMGIDKPNVRFVAHLNLPKSIEAYYQETGRAGRDGLPADAWMLYGLQDVITLRQ 380
Query: 625 -LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPP 683
L ++D K+ R + + CR + L+ YFG+D C CD C++ PP
Sbjct: 381 MLDQSTADDGHKRVERQKLEAMLGLCELTSCRRQALLAYFGDDL-ESPCGNCDTCLE-PP 438
Query: 684 EMKNLKEEANILMQVIAAYNEQ 705
+ E A + + E+
Sbjct: 439 ATWDATEPARKALSCVYRTGER 460
>gi|119470517|ref|ZP_01613220.1| ATP-dependent DNA helicase [Alteromonadales bacterium TW-7]
gi|119446218|gb|EAW27495.1| ATP-dependent DNA helicase [Alteromonadales bacterium TW-7]
Length = 607
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 139/220 (63%), Gaps = 17/220 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K ++LK+ FG+S ++ QK + A L D LVL TG GKS+C+QIPAL+ V +VI
Sbjct: 14 KPETVLKQVFGYSEFRDGQKAVIDAALNAQDTLVLLPTGGGKSVCYQIPALVLEGVTIVI 73
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ ++L GV A ++ + + +V Q+ +G+ ++YV PE V++
Sbjct: 74 SPLISLMQDQVAQLQALGVKAAYVNNSLAREEQQRVYQQLHQGLIKLLYVAPEKVLQR-D 132
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L+RL+ + I+LFAIDE HCVS WGHDFRP Y RL+ L++ F +P+MAL
Sbjct: 133 FLERLSHLK-ISLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFA---------HVPMMAL 182
Query: 337 TATATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSVK 375
TATA R DI++ L + + ++ T SF RPN+R++++
Sbjct: 183 TATADKATRFDIVEQLKLQQ--PYIHTGSFDRPNIRYTIE 220
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 102/176 (57%), Gaps = 17/176 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK IA+ L G+ AAAY+A + Q + V T F + +++VVAT+AFGMG
Sbjct: 242 IIYCTSRKRVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMG 301
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPS----- 627
I+K NVR ++HY P+S+EAYYQE GRAGRDG A+ ++Y A++ +
Sbjct: 302 INKPNVRFVLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQ 361
Query: 628 -RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
RR E+Q A ++ CR +IL+ YF E + E+C CD+C++ P
Sbjct: 362 RRRVEEQRFNAMASFAEA-------QTCRRQILLNYFSE-YQREQCGNCDICLNPP 409
>gi|218438410|ref|YP_002376739.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 7424]
gi|218171138|gb|ACK69871.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 7424]
Length = 709
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 136/226 (60%), Gaps = 15/226 (6%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ + LK++FG+ + + Q+E + L + D LV+ TG GKSLCFQ+PALL V VV+S
Sbjct: 8 LETALKQYFGYDNFRPGQREIIEEALENRDLLVIMPTGGGKSLCFQLPALLKPGVTVVVS 67
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLI 275
PLISLM DQ L +G+ A FL S +++ E LR ++YV PE ++ +
Sbjct: 68 PLISLMQDQVDALLDNGIGATFLNSSLDFSEIRSRETAILRNKIKLLYVAPERLLSEKFT 127
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L +A+ GI+ FAIDE HCVS+WGHDFRP+YR+L LR+ + ++P+ A
Sbjct: 128 PFLDTIAQQVGISAFAIDEAHCVSEWGHDFRPEYRQLRQLRKRYP---------NVPMFA 178
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
LTATAT +V++DI+ L + K + SF R NL + +K + S
Sbjct: 179 LTATATKRVQQDIILQLDL-KNPGIHIASFNRTNLYYDIKPKEKRS 223
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 105/204 (51%), Gaps = 11/204 (5%)
Query: 489 SFERTDLLN--KPAERLSMLQE----PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF RT+L KP E+ S Q G I+Y +R+ IA L G+ A Y
Sbjct: 206 SFNRTNLYYDIKPKEKRSYNQLLKYIRAHQGSGIVYCMSRRNVDEIAFRLQNDGISALPY 265
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L T F + + V+VAT+AFGMGI+K +VR ++H+ P++LE+YYQE+GR
Sbjct: 266 HAGLTDEARTLNQTRFIRDDVRVMVATVAFGMGINKPDVRFVVHFDLPRNLESYYQESGR 325
Query: 603 AGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A C+L +L + ++ + + + K A + L Y T CR I+
Sbjct: 326 AGRDGEPAKCLLLYSLGDLKKIEYIIEQKTNPQEQKIARQQLRQVIDYAEGTE-CRRTIV 384
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPP 683
+ YFGE F C CD C P
Sbjct: 385 LRYFGERFKG-NCNNCDNCRHPKP 407
>gi|359449260|ref|ZP_09238757.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20480]
gi|392537893|ref|ZP_10285030.1| ATP-dependent DNA helicase [Pseudoalteromonas marina mano4]
gi|358044909|dbj|GAA75006.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20480]
Length = 607
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 139/220 (63%), Gaps = 17/220 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K ++LK+ FG+S ++ QK + A L D LVL TG GKS+C+QIPAL+ V +VI
Sbjct: 14 KPETVLKQVFGYSEFRDGQKAVIDAALNAQDTLVLLPTGGGKSVCYQIPALVLEGVTIVI 73
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ ++L GV A ++ + + +V Q+ +G+ ++YV PE V++
Sbjct: 74 SPLISLMQDQVAQLQALGVKAAYVNNSLAREEQQRVYQQLHQGLIKLLYVAPEKVLQR-D 132
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L+RL+ + I+LFAIDE HCVS WGHDFRP Y RL+ L++ F +P+MAL
Sbjct: 133 FLERLSHLK-ISLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFA---------HVPMMAL 182
Query: 337 TATATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSVK 375
TATA R DI++ L + + ++ T SF RPN+R++++
Sbjct: 183 TATADKATRFDIVEQLKLQQ--PYIHTGSFDRPNIRYTIE 220
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 102/176 (57%), Gaps = 17/176 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK IA+ L G+ AAAY+A + Q + V T F + +++VVAT+AFGMG
Sbjct: 242 IIYCTSRKRVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMG 301
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPS----- 627
I+K NVR ++HY P+S+EAYYQE GRAGRDG A+ ++Y A++ +
Sbjct: 302 INKPNVRFVLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQ 361
Query: 628 -RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
RR E+Q A ++ CR +IL+ YF E + E+C CD+C++ P
Sbjct: 362 RRRVEEQRFNAMASFAEA-------QTCRRQILLNYFSE-YQREQCGNCDICLNPP 409
>gi|291386094|ref|XP_002709593.1| PREDICTED: Werner syndrome protein [Oryctolagus cuniculus]
Length = 1416
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 124/211 (58%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGH S K Q + + + L D +V+ ATG GKSLCFQ P + GK+ VVI PLI
Sbjct: 514 LKTYFGHFSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYVGKIGVVICPLI 573
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q N +E L G Y I+Y+ PE + LQ+L
Sbjct: 574 SLMEDQVLQLEMSNIPACFLGSAQSKNVLEDIKL-GKYCIVYMTPEFCSGNLDLLQQLDA 632
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
S GI L A+DE HC+S+WGHDFR +R L L+ +P++ALTATA+
Sbjct: 633 SIGITLIAVDEAHCISEWGHDFRSSFRSLGSLKTALPL---------VPIVALTATASSS 683
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
VREDI++ L +S + TSF RPNL V
Sbjct: 684 VREDIVRCLKLS-NPQITCTSFDRPNLYLEV 713
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 138/279 (49%), Gaps = 34/279 (12%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L V Y+A + S+ + VH F + ++ V+ATIA
Sbjct: 739 EGPTIIYCPSRKMTEQVTAELRKLNVACGTYHAGMSCSRRKEVHHSFMRDDIQCVIATIA 798
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYANLSSMPT--LLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C +L+A S LL
Sbjct: 799 FGMGINKADIRKVIHYGTPKEMESYYQEIGRAGRDGLQSSCHLLWAAADSNLNRHLLMEI 858
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGED---------FSHEKCQLCDVC- 678
R E +ML+ +Y +++S CR +I++ +F + EKC CD C
Sbjct: 859 RDEKFRLYKLQMLTKMEKY-LHSSRCRRQIILSHFEDKQLRKASLGIMGTEKC--CDNCR 915
Query: 679 --------VDGPPE--MKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
VD E ++ +A L+ +A Q + G Q+ D+
Sbjct: 916 SRLGHSHPVDASDEDTSQDFGPQAFQLLSAVAILG-QKFGIGVPILFLRGSSSQRVADKY 974
Query: 729 NLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIRE 767
F ++Q++ WW+ +R++ N+G++ E
Sbjct: 975 RSHSFFGIGKDQTES-------WWKAFSRLLINEGFLVE 1006
>gi|383316443|ref|YP_005377285.1| ATP-dependent DNA helicase RecQ [Frateuria aurantia DSM 6220]
gi|379043547|gb|AFC85603.1| ATP-dependent DNA helicase RecQ [Frateuria aurantia DSM 6220]
Length = 602
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 134/218 (61%), Gaps = 19/218 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
S+L+ FG+++ + Q+ + D LVL TG GKSLC+Q+PALL + VV+SP
Sbjct: 6 RSILQSVFGYTAFRGQQQAVVEHVAEGGDALVLMPTGGGKSLCYQVPALLRSGLGVVVSP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVI--RLIK 276
LI+LM DQ L + GV A +L S + VE++ + G ++YV PE ++ RL+
Sbjct: 66 LIALMQDQVDALRQLGVAAAYLNSSLDAEAQRAVERQMMSGELQLLYVAPERLLSPRLLA 125
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L+R+ IALFAIDE HCVS+WGHDFRP+YR L+ L+ F +P +AL
Sbjct: 126 MLERIE----IALFAIDEAHCVSQWGHDFRPEYRELAELQRRFP---------QVPRIAL 172
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TATA + RE+I++ L + + +F L+SF RPN+R+ V
Sbjct: 173 TATADPRTREEIIERLGLQQARQF-LSSFDRPNIRYRV 209
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 91/171 (53%), Gaps = 6/171 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
+IY +RK+ A +L G A AY+A L ++ LR H + F V+VAT+AFGM
Sbjct: 232 VIYCLSRKKVDETAGWLQAMGFNALAYHAGL-EAALRSEHQQRFLREDGVVMVATVAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS---SMPTLLPSRRSE 631
GIDK +VR + H P+S+E YYQE GRAGRDG AD + L+ +M ++ S
Sbjct: 291 GIDKPDVRFVAHLDLPRSIEGYYQETGRAGRDGLPADAWMVYGLNDVVTMSQMIAQSESA 350
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
D K+ R + + CR +L+ FGE S C CD C++ P
Sbjct: 351 DDRKRIERQKLEALLGYAEATTCRRVLLLAAFGET-SDGPCGNCDNCLEPP 400
>gi|254420964|ref|ZP_05034688.1| ATP-dependent DNA helicase RecQ [Brevundimonas sp. BAL3]
gi|196187141|gb|EDX82117.1| ATP-dependent DNA helicase RecQ [Brevundimonas sp. BAL3]
Length = 632
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/235 (40%), Positives = 136/235 (57%), Gaps = 15/235 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
SLL + +GH + Q + ++ LA D L + TG GKS+C+QIPA+L + +V+SP
Sbjct: 20 RSLLSRVWGHGDFRGLQSQVVAEILAGRDALAVLPTGGGKSVCYQIPAILRPGLGLVVSP 79
Query: 222 LISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ L + GV A L SG + + A G ++YV PE + +
Sbjct: 80 LIALMTDQVEALKQQGVAAARLDSGVSLDERSAIWAAARSGDLDLLYVSPEGLAAGAM-M 138
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
RLAE ++L AIDE HCVS+WGHDFRPDYR L +L E F ++P +A+TA
Sbjct: 139 DRLAEL-PLSLIAIDEAHCVSQWGHDFRPDYRNLGLLAERFP---------NVPRIAVTA 188
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLI 393
TA + R+DIL+SL + + FV SF RPNL+ S + +++SRA +L+
Sbjct: 189 TADARTRDDILRSLRLEQAKVFV-DSFARPNLQLSAERKESASRAKTDARVIELV 242
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
++Y +R +A+ L G A AY+A + + R F V+VATIAFGMG
Sbjct: 251 VVYCGSRDGCDRVAQALRDAGTNAIAYHAGMDNKERDRRLERFLAEDGAVMVATIAFGMG 310
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV-LYANLSSMPTL--LPSRRSED 632
+DK +VR +IH P SLEAY+QE GR GRDG A+ + LY TL L SR +
Sbjct: 311 VDKADVRFVIHADPPGSLEAYWQEIGRGGRDGEPAEGITLYGPSDIAWTLRRLDSRPMAE 370
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
+ KQ + ++ + CRA+ + YFGE + C +CD+C D P
Sbjct: 371 EVKQVQVRKARQLFAMLDGAVCRAQAVRRYFGE-TDADPCGVCDICGDPP 419
>gi|297851930|ref|XP_002893846.1| RECQL2 [Arabidopsis lyrata subsp. lyrata]
gi|297339688|gb|EFH70105.1| RECQL2 [Arabidopsis lyrata subsp. lyrata]
Length = 704
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 142/228 (62%), Gaps = 18/228 (7%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
+W+ + + + FG S + QKE ++A +A D LV+ A G GKSLC+Q+PA+L G
Sbjct: 71 EWDSRADDVRFNVFGISKYRANQKEIINAIMAGRDVLVIMAAGGGKSLCYQLPAILRGGT 130
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFL--GSGQPDNKVEQKAL-RGMY--SIIYVCPET 270
+V+SPL+SL+ DQ L+ G++A L SG+ + K KAL +G + I+YV PE
Sbjct: 131 TLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEHDLKILYVTPEK 190
Query: 271 VI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
V R + L++ + ++L +IDE HC S+WGHDFRPDY+ LS+L+ F
Sbjct: 191 VSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFP------- 243
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+P++ALTATAT +V+ D+++ LH+ K KFV +S RPNL +SV+
Sbjct: 244 --KVPMVALTATATQKVQNDLIEMLHIPKCVKFV-SSVNRPNLFYSVR 288
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 10/166 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RKE IA L G+ A Y+A + + +VH + +NKL+V+V T+AFGMG
Sbjct: 316 IVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMG 375
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K +VR +IH+ +S+E YYQE+GRAGRDG ++C+L+ + +P R
Sbjct: 376 INKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVP------RQSSMVF 429
Query: 636 QAY---RMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVC 678
Y + L D RY + + CR +FGE S + +CD C
Sbjct: 430 YEYSGLQNLYDIVRYCQSKTKCRRSAFFRHFGEP-SQDCNGMCDNC 474
>gi|91772141|ref|YP_564833.1| ATP-dependent DNA helicase RecQ [Methanococcoides burtonii DSM
6242]
gi|91711156|gb|ABE51083.1| ATP dependent DNA helicase RecQ [Methanococcoides burtonii DSM
6242]
Length = 647
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 133/214 (62%), Gaps = 15/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+K+FG+S + Q++ ++ L D VL TG GKS+C+QIPAL+ + VV+SPLIS
Sbjct: 5 LQKYFGYSEFRPLQEDIINDVLNKKDVFVLMPTGGGKSICYQIPALIMDGLAVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQ---KALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G++A +L S N+V++ + G I+YV PE + +K Q L
Sbjct: 65 LMKDQVDGLVSNGISAAYLNSTLSYNEVQKITRAIVEGNVDILYVAPERL--CMKSTQEL 122
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
++LFAIDE HC+S+WGHDFRP+YRR+ L++ + D+P++ALTATAT
Sbjct: 123 LSHVNVSLFAIDEAHCISEWGHDFRPEYRRMGFLKKKYP---------DVPVIALTATAT 173
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+V+E+ +K L + + +V SF R NL + ++
Sbjct: 174 AKVKENTIKQLDLVSPSVYV-ASFDRANLSYEIR 206
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 132/253 (52%), Gaps = 12/253 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK S++ L G A Y+A L ++ + F + ++++VAT+AFGMG
Sbjct: 228 IIYCNSRKSVESVSTKLNREGFHALPYHAGLNDAKRQDNQERFIRDDVDIIVATVAFGMG 287
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
IDK NVR +IHY P++LE YYQE GR GRDG DC+LY A+ + L+ + +
Sbjct: 288 IDKPNVRFVIHYDLPKNLEGYYQETGRGGRDGLECDCILYFSRADWYKIKYLIDQKPKKS 347
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ A L + Y +TS CR K L+ YFGE+ + C CDVC++ P + + + A
Sbjct: 348 ERDIAMTKLQEMIDYCESTS-CRRKALLHYFGEELESDNCGSCDVCLN-PRDTYDASDVA 405
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWW 752
+ + NE+ D I +G K +K + + ++ K + Y+ ++ W
Sbjct: 406 RTFLSCVDEVNERFGLTHIVD-ILTGSKSKKIISYKHDRL---KSYGTGEGYIKSE---W 458
Query: 753 RGLARIMENKGYI 765
+AR M G++
Sbjct: 459 VEMAREMIRLGHV 471
>gi|261493662|ref|ZP_05990181.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261310662|gb|EEY11846.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 599
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 127/216 (58%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+L FG+ ++ Q+E ++A L + DCLV+ TG GKSLC+Q+PAL + +VISPL
Sbjct: 7 SVLNNIFGYQKFRDGQEEVINAVLENRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPL 66
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A +L S Q VEQKAL G ++Y+ PE V + +
Sbjct: 67 ISLMKDQVDQLITNGIEAAYLNSTQTLEEQQFVEQKALSGQLKLLYLSPEKV--MTQGFF 124
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
I+ A+DE HCVS+WGHDFRP+Y L LR F ++PLMALTAT
Sbjct: 125 HFISLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGLRNTFP---------NVPLMALTAT 175
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A R DIL L ++ L SF RPN+R++V+
Sbjct: 176 ADPTTRSDILHHLRLN-SPHIYLGSFDRPNIRYTVQ 210
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 139/275 (50%), Gaps = 21/275 (7%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L L + I+Y +RK+ I + L + Y+A + Q RV
Sbjct: 214 KPLEQLIKLISKQQGKSGIVYCNSRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNA 273
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F + +++VVATIAFGMGI+K NVR ++H+ P+S+E+YYQE GRAGRD ++ VL+ +
Sbjct: 274 FQRDDIQIVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYD 333
Query: 618 LSSMP----TLLPSRRSEDQTKQAYRM--LSDCFRYGMNTSCCRAKILVEYFGEDFSHEK 671
S LL SE + + +++ + D + CR +L+ YFGE E+
Sbjct: 334 PSDYAWLQKILLEEPESEQRNIKQHKLQAIGDF----AESQTCRRLVLLNYFGEH-RQEQ 388
Query: 672 CQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLK 731
C+ CD+C+D PP+ + +A +M VI Q + G+ K + + +
Sbjct: 389 CKNCDICLD-PPQQYDGLLDAQKVMSVIYR-TGQIFGQHHIIAVLRGMNNLKIREHQHDQ 446
Query: 732 MFVSKI-REQSQKYLATDLLWWRGLARIMENKGYI 765
+ V I +EQSQ Y W+ + R + + G I
Sbjct: 447 LSVYGIGKEQSQHY-------WQNVVRQLIHLGLI 474
>gi|126179265|ref|YP_001047230.1| ATP-dependent DNA helicase RecQ [Methanoculleus marisnigri JR1]
gi|125862059|gb|ABN57248.1| ATP-dependent DNA helicase, RecQ family [Methanoculleus marisnigri
JR1]
Length = 419
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 132/218 (60%), Gaps = 15/218 (6%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+++ +L+++FGHS+ +Q+E + LA D L + ATG GKSLC+Q+PAL+ VV+VI
Sbjct: 3 RLHLILQRYFGHSAFNLYQREIIEDLLAGRDVLAVLATGGGKSLCYQVPALVGDGVVLVI 62
Query: 220 SPLISLMHDQCSKLSKHGVTACFL---GSGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ L GV A L GS ++ + G+ I+YV PE + +
Sbjct: 63 SPLIALMKDQVDDLQARGVGAEALNSSGSYAATRRILSELKEGLIQILYVSPEKAVG--E 120
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L S + L A+DE HC+S WGH FRP+YR LSVL+E F +P++AL
Sbjct: 121 DFIDLMASLPVTLIAVDEAHCISMWGHQFRPEYRSLSVLKERFPG---------VPMVAL 171
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TATAT VR+DI + L++S + +V SF R NLR+ V
Sbjct: 172 TATATPDVRDDIARQLNLSDPSVYV-GSFNRENLRYVV 208
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+YV TR ++A L G+ A Y+A + + R F K+ VV AT AFGMG
Sbjct: 232 IVYVATRDGAETLAARLRAGGIPALPYHAGMTAAARRETQDRFIGGKVPVVCATSAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLP----SRRSE 631
IDK +VR ++HY P++LEAYYQE+GRAGRDG +DC+LY + L SE
Sbjct: 292 IDKPDVRFVVHYDMPKTLEAYYQESGRAGRDGKESDCILYYSDEDARRLRSFIDRDLASE 351
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVC 678
Q K A L Y T+ CR K L+ YFGE E C CD C
Sbjct: 352 FQRKVARSKLQSMVDY-CTTTECRRKALLGYFGERI-EEPCNGCDAC 396
>gi|431902275|gb|ELK08776.1| Werner syndrome ATP-dependent helicase [Pteropus alecto]
Length = 1338
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 126/211 (59%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHS+ K Q + + + L D +V+ ATG GKSLCFQ P + G++ +VISPLI
Sbjct: 412 LKTYFGHSNFKPVQWKVIYSVLKERRDNVVVMATGYGKSLCFQYPPVYMGRIGLVISPLI 471
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ L ++ACFLGS Q N + + G Y I+Y+ PE + LQ L
Sbjct: 472 SLMEDQVLHLRMSNISACFLGSAQSKN-ILKDIKSGKYQIVYLTPEFCLGNFNLLQELEA 530
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ GIAL A+DE HC+S+WGHDFR +R L L+ F +P++ALTATA+
Sbjct: 531 NIGIALIAVDEAHCISEWGHDFRNSFRALGSLKAAFPL---------VPIVALTATASSS 581
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
VREDI++ L++ K + T F RPNL V
Sbjct: 582 VREDIVRCLNL-KDPQITCTGFDRPNLYLEV 611
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 104/181 (57%), Gaps = 19/181 (10%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + + + VH F ++++ VVATIA
Sbjct: 637 EGPTIIYCPSRKMTERVTDELRKLKLTCGTYHAGMTINSRKAVHHRFMRDEIQCVVATIA 696
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYANLSSMPTLLPSRRS 630
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+A + L R S
Sbjct: 697 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWA--PADINLNRYRLS 754
Query: 631 EDQTKQ----AYRMLSDCFRYGMNTSCCRAKILVEYFGED---------FSHEKCQLCDV 677
E Q ++ +ML+ +Y +++S CR +I++ +F + EKC CD
Sbjct: 755 EIQNEKFRLYKLKMLAKMEKY-LHSSSCRRRIILSHFEDKQLRKASSGIMGTEKC--CDN 811
Query: 678 C 678
C
Sbjct: 812 C 812
>gi|154492528|ref|ZP_02032154.1| hypothetical protein PARMER_02162 [Parabacteroides merdae ATCC
43184]
gi|154087753|gb|EDN86798.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae ATCC 43184]
Length = 621
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 127/216 (58%), Gaps = 16/216 (7%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
SLLK+ FG++S + Q E + L D LVL TG GKS+CFQ+PA+ +V+SPL
Sbjct: 18 SLLKRFFGYTSFRPLQAEIIQRTLQKEDSLVLMPTGGGKSICFQLPAIYMPGTAIVVSPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
I+LM DQ L +G+ A L S P+ ++V Q ++G ++Y+ PE + I L
Sbjct: 78 IALMKDQVEGLIANGIPAATLNSMMPEEERHRVRQLCIQGKVKLLYISPEGI---ISELH 134
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L I+L AIDE HC+S WGHDFRP+Y +LSVL+ENF +P++ALTAT
Sbjct: 135 WLLPRIDISLIAIDEAHCISHWGHDFRPEYTQLSVLKENFPK---------VPIIALTAT 185
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A R DIL L + F+ +SF RPNL +++
Sbjct: 186 ADKITRTDILNQLKLRDPKTFI-SSFDRPNLSLTIR 220
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 109/184 (59%), Gaps = 11/184 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R T S+ + L + ++A AY+A L + + +F +++ VV AT+AFGMG
Sbjct: 245 IIYCMSRNSTESLVEELSEYSIRAVAYHAGLSSDKREKAQDDFINDRVNVVCATVAFGMG 304
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSED--Q 633
IDK NVR +IHY P S+E YYQE GRAGRDG +D +L+ ++ + LL R +E+ Q
Sbjct: 305 IDKSNVRWVIHYNMPASIENYYQEIGRAGRDGMKSDTLLFYSVGDI--LLLRRFAEESGQ 362
Query: 634 TKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEAN 693
+ L+ RY CR +IL+ YFGE+ + + C CDVC PP+ + + +
Sbjct: 363 KDVCLQKLNRMRRY-CEADICRRRILLSYFGEE-TDKDCGNCDVC-KNPPQ----RFDGS 415
Query: 694 ILMQ 697
IL+Q
Sbjct: 416 ILVQ 419
>gi|402877950|ref|XP_003902671.1| PREDICTED: Werner syndrome ATP-dependent helicase [Papio anubis]
Length = 1373
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 127/212 (59%), Gaps = 12/212 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D + + ATG GKSLCFQ P + GK+ +VISPLI
Sbjct: 539 LKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLI 598
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + CFLGS Q +N + L G Y I+Y+ PE + LQ+L
Sbjct: 599 SLMEDQVLQLKMSNIPTCFLGSAQSENVLTDIKL-GKYRIVYITPEYCSGNMGLLQQLEA 657
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ GI L A+DE HC+S+WGHDFR +R+L L+ +P++ALTATAT
Sbjct: 658 NIGITLIAVDEAHCISEWGHDFRNSFRKLGSLKTALPM---------VPIVALTATATSS 708
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+REDI++ L++ + + + T F RPNL V+
Sbjct: 709 IREDIVRCLNL-RNPQIICTGFDRPNLYLEVR 739
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S+ + VH F ++++ V+ATIA
Sbjct: 764 EGPTIIYCPSRKMTEQVTAELRKLNLSCETYHAGMSFSRRKDVHHRFVRDEIQCVIATIA 823
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYA 616
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C +L+A
Sbjct: 824 FGMGINKADIRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHILWA 869
>gi|319786295|ref|YP_004145770.1| ATP-dependent DNA helicase RecQ [Pseudoxanthomonas suwonensis 11-1]
gi|317464807|gb|ADV26539.1| ATP-dependent DNA helicase RecQ [Pseudoxanthomonas suwonensis 11-1]
Length = 623
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 136/225 (60%), Gaps = 19/225 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+L++ FG+ + + Q++ + A +D LVL TG GKSLC+Q+PALL +V+SPL
Sbjct: 23 SVLRQVFGYDAFRGQQQDIIEHVAAGNDALVLMPTGGGKSLCYQVPALLREGTGIVVSPL 82
Query: 223 ISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVI--RLIKP 277
I+LM DQ L + GV A L S + +VE++ L G ++YV PE ++ R +
Sbjct: 83 IALMQDQVEALLQLGVRAACLNSTLDAEQARQVERELLDGTLDLLYVAPERLLTGRFLSL 142
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L+R SR IALFAIDE HCVS+WGHDFRP+YR L+VL E + D+P +ALT
Sbjct: 143 LER---SR-IALFAIDEAHCVSQWGHDFRPEYRELTVLHERWP---------DVPRLALT 189
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
ATA R +I + L + F L+SF RPN+R++V H R
Sbjct: 190 ATADPPTRREIAERLALESARCF-LSSFDRPNIRYAVAHKDNPRR 233
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 7/171 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A++L G G+ A Y+A LP + F V+ ATIAFGMG
Sbjct: 248 IVYCLSRRKVEETAEFLAGQGIAALPYHAGLPSDVRAQNQRRFLREDGIVMCATIAFGMG 307
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG A+ + L + L + +
Sbjct: 308 IDKPDVRFVAHLDLPKSIEGYYQETGRAGRDGEPAEAWMGYGLGDVVLLRQMIEQGEASG 367
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDF----SHEKCQLCDVCV 679
+ K R D ++ CR + L+ FGE + E C CD C+
Sbjct: 368 ERKALERRKLDQLLGYCESAMCRRQALLAAFGEAYESPDGREGCGNCDNCL 418
>gi|445499562|ref|ZP_21466417.1| ATP-dependent DNA helicase recQ [Janthinobacterium sp. HH01]
gi|444789557|gb|ELX11105.1| ATP-dependent DNA helicase recQ [Janthinobacterium sp. HH01]
Length = 607
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 140/239 (58%), Gaps = 23/239 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LL+ FG+ + + Q E + D LVL TG GKSLC+QIPAL+ V VV+SPLI
Sbjct: 13 LLQTVFGYPAFRGQQAEIVGHVSGGGDALVLMPTGGGKSLCYQIPALVRDGVGVVVSPLI 72
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LM DQ L++ GV A FL S Q +++E+ G ++YV PE + + +
Sbjct: 73 ALMQDQVDALAEVGVRAAFLNSTQTYEEASRIERLVRTGEIDLVYVAPERL--MTERCLN 130
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L ++ IALFAIDE HCVS+WGHDFRP+Y +LSVL E F D+P +ALTATA
Sbjct: 131 LFQASKIALFAIDEAHCVSQWGHDFRPEYIKLSVLHEQFP---------DVPRIALTATA 181
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKK 399
Q R +I+ L + +FV +SF RPN+R+ + +A+ +K QL+D T +
Sbjct: 182 DPQTRAEIIHRLQLGDAMQFV-SSFDRPNIRYQI-----VEKANGRK---QLLDFITTE 231
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 93/178 (52%), Gaps = 21/178 (11%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+ A++L GV+A AY+A + ++ +F + V+ ATIAFGMG
Sbjct: 238 IVYCLSRKKVEETAEFLNENGVRAMAYHAGMDHAKRAANQAKFLREENIVMCATIAFGMG 297
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR + H P+S+E YYQE GRAGRDG + + L ++ RR D+++
Sbjct: 298 IDKPNVRFVCHLDLPKSIEGYYQETGRAGRDGDPSSAWMAYGLQD---VVLQRRMIDESE 354
Query: 636 --QAYR---------MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
+ ++ ML C T CR L++YFGE + C CD C+ P
Sbjct: 355 ADETFKRVLGNKLDAMLGLC-----ETLSCRRVRLLDYFGE--ASGPCGNCDTCLIPP 405
>gi|167622376|ref|YP_001672670.1| ATP-dependent DNA helicase RecQ [Shewanella halifaxensis HAW-EB4]
gi|167352398|gb|ABZ75011.1| ATP-dependent DNA helicase RecQ [Shewanella halifaxensis HAW-EB4]
Length = 607
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 135/220 (61%), Gaps = 20/220 (9%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+++S L+ FG+ + + Q+E + A DCLV+ TG GKSLC+Q+PAL+ + VV+
Sbjct: 12 QLSSTLQSVFGYRTFREGQREVIEQICAGQDCLVIMPTGGGKSLCYQLPALIMPGLTVVV 71
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ L + GV+A +L S P +V QK G ++YV PE RL++
Sbjct: 72 SPLISLMKDQVDSLIQTGVSAAYLNSSLPREESLQVLQKMRYGELKLLYVSPE---RLLQ 128
Query: 277 P--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ RL E ++LFAIDE HC+S+WGHDFRP+Y L LR+ F +P+M
Sbjct: 129 ASFIDRLHEL-NVSLFAIDEAHCISQWGHDFRPEYAALGRLRQQFP---------QVPIM 178
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA R DI + L ++ + +LTSF RPN+R++V
Sbjct: 179 ALTATADKATRADICERLTITPHS--LLTSFDRPNIRYTV 216
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 121/216 (56%), Gaps = 11/216 (5%)
Query: 489 SFERTDLLNKPAERLSMLQE-----PLEDGLT-IIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ AE+L+ + ++G + I+Y +R+ +A+ L G +A AY
Sbjct: 206 SFDRPNIRYTVAEKLNAANQLRQFVDAQNGTSGIVYCSSRRRVDEVAERLRLQGHQAEAY 265
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A + + V F +++L++VVAT+AFGMGI+K NVR ++HY P+S+EAYYQE GR
Sbjct: 266 HAGKTQEERADVQDRFLKDQLDIVVATVAFGMGINKSNVRYVVHYDIPKSVEAYYQETGR 325
Query: 603 AGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG ++ ++ A++ + L+ Q + + L+ + CR ++L
Sbjct: 326 AGRDGLDSEALMLFDPADIGRVRHLIEQSEPGPQQQVEFHKLNTMAAFA-EAQTCRRQVL 384
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
+ YF E + + C CD+C+D P + +++ +L
Sbjct: 385 LHYFDEP-ALKACGNCDICLDPPKKYNGIQDAQKVL 419
>gi|328873248|gb|EGG21615.1| ATP-dependent DNA helicase RecQ family protein [Dictyostelium
fasciculatum]
Length = 926
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 154/260 (59%), Gaps = 22/260 (8%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEAL-SAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
E +++S+LKK+FG +S + Q + + + + D V AATG+GKSLCFQ+P ++ K
Sbjct: 105 EERIHSVLKKYFGFNSFRGSQYDIVYQSCVYQSDIYVSAATGAGKSLCFQLPPIVLRKTA 164
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGS----GQPDNKVEQKALRGMYSIIYVCPETVI 272
+VISPLIS+MHDQ KL++ G+ AC G P QK + G YS++++ PE +
Sbjct: 165 LVISPLISIMHDQVMKLTQMGIRACQWSPQCRIGDP---THQKLVGGYYSVVFMSPEKAM 221
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
++ +Q L E+ + + AIDE HC+S+WGHDFRPDY LS+ R+ F ++P
Sbjct: 222 TSLEIIQELCETDTLCMVAIDECHCLSQWGHDFRPDYVNLSIFRDMFP---------NVP 272
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFV-LTSFFRPNLRFS-VKHSKTSSRASYKKDFC 390
+MALTAT+T ++ +++ SL M K F+ S RPN+ + ++ +K + R D
Sbjct: 273 IMALTATSTPEIEREVISSLKMRK--PFISHASRNRPNIFYQIIQKTKGTGRKEKDWDVI 330
Query: 391 QLIDIYTKKKKTGEKEKSAI 410
I I+T ++K + S I
Sbjct: 331 TKI-IHTMQEKRPNQSNSTI 349
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 103/193 (53%), Gaps = 32/193 (16%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566
+ P + TIIY PT +E++ + +L ++ YN+ + Q + +H +F N ++VV
Sbjct: 340 KRPNQSNSTIIYCPTIEESVELNYFLKTKQIRTVCYNSKVSMEQRKTIHRDFLYNNIDVV 399
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLP 626
VATIAFGMGIDK ++R IIHYG +S+E YYQE+GR GRDG L S+
Sbjct: 400 VATIAFGMGIDKPDIRLIIHYGPSKSIEEYYQESGRGGRDG----------LPSLSITFF 449
Query: 627 SRRSEDQTKQAYRM--------LSDCFR-------YGMNTSCCRAKILVEYFGEDFSHEK 671
SR +D K YR+ +S+ F+ + +N CR K+++ GE ++
Sbjct: 450 SR--QDFIKGDYRITKSPNLQTVSNTFKKYSEYKSFLLNGVECRRKMVLNALGESYTTPT 507
Query: 672 -----CQLCDVCV 679
CQ CD C+
Sbjct: 508 DVVGGCQGCDNCI 520
>gi|145632079|ref|ZP_01787814.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655]
gi|145634861|ref|ZP_01790569.1| organic solvent tolerance protein [Haemophilus influenzae PittAA]
gi|144986986|gb|EDJ93516.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655]
gi|145268027|gb|EDK08023.1| organic solvent tolerance protein [Haemophilus influenzae PittAA]
Length = 619
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK FG+ S + Q+E ++A L D LV+ ATG+GKSLC+QIPAL + +VISPL
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A FL S Q +V+ K + G ++YV PE V +
Sbjct: 78 ISLMKDQVDQLQANGIEADFLNSSQTLEQQQRVQNKLISGQLKLLYVSPEKV--MTNSFF 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L + AIDE HC+S+WGHDFRP+Y +L L+ +F D P+MALTAT
Sbjct: 136 QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFP---------DAPIMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A ++DIL+ L++ K++ SF RPN+R++++
Sbjct: 187 ADYATQQDILRHLNLKNLHKYI-GSFDRPNIRYTLE 221
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 145/280 (51%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + IIY +R + IA+ L GV AAAY+A + + RV +
Sbjct: 225 KPMEQLTRFVLAQKGKSGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQD 284
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 285 FQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 344
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + + +L P R+ E +A ++ + CR +L+ YFGE
Sbjct: 345 PADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAE-------SQTCRRLVLLNYFGEH-R 396
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
C CD+C+D P + L + ++ + Q + G+ QK ++R
Sbjct: 397 QTPCNNCDICLDPPKKYDGLVDAQKVMSTIYRV--GQCFGAHYVIAMLRGMHNQKIIERQ 454
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ K+ V I +++S+++ W+ + R + + G++++
Sbjct: 455 HHKLSVYGIGKDKSKEH-------WQSVIRQLIHLGFVQQ 487
>gi|412992354|emb|CCO20067.1| predicted protein [Bathycoccus prasinos]
Length = 1028
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/275 (37%), Positives = 147/275 (53%), Gaps = 40/275 (14%)
Query: 168 HFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTG-KVVVVISPLISLM 226
++G+S+ + Q+E + A + D V +TGSGKSL +Q+PAL G K+ +V+SPLISLM
Sbjct: 113 YYGYSNFRPGQEEVIKAAMEGRDTCVFWSTGSGKSLAYQLPALHEGGKMSIVVSPLISLM 172
Query: 227 HDQCSKLSK-----------HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV---- 271
DQ + L+ + ACFLGSGQ D VE++ RG Y I++V PE +
Sbjct: 173 QDQVTALNNTVGNIADGSGGNNDIACFLGSGQTDTTVEERVFRGDYKIVFVTPEKISFVS 232
Query: 272 -----------IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFG 320
++ LQ L I L AIDE HC+S+WGHDFR Y++L+VLR+
Sbjct: 233 DDGGFGSSSSSSVFMQRLQSLKAMNKIGLIAIDEAHCISQWGHDFRVSYKKLAVLRDQLP 292
Query: 321 ANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSVKHSKT 379
IP+MALTATA VREDI K+L +S ++ T S RPNLR H K
Sbjct: 293 G---------IPIMALTATAVKHVREDISKTLKLS--NPYIATNSVDRPNLRIQC-HRKV 340
Query: 380 SSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDL 414
+ Q+ + ++K ++K A+P L
Sbjct: 341 DFSSDLNYIVSQITAAASIQEKQQHQQKRALPASL 375
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 8/181 (4%)
Query: 506 LQEPLEDGLTIIYVPTRKETLSIAKYLCG-FGVK-AAAYNASLPKSQLRRVHTEFHENKL 563
L +P D +IIY T KE + + L GV+ A Y+ S+ H F ++
Sbjct: 375 LAKPKYDS-SIIYCATIKEVVQLTGALQHRIGVENVAMYHGSMTPQDRHDAHMRFLSSEC 433
Query: 564 EVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT 623
+VVVAT AFGMGIDK +VR +IH G P+++E YYQ+ GRAGRDG ++ + + +
Sbjct: 434 KVVVATTAFGMGIDKADVRTVIHMGAPKTMEEYYQQIGRAGRDGIASNVSMLFSDNDFSK 493
Query: 624 LLPSRRSEDQTKQAYRMLSDCF----RYGMNTSCCRAKILVEYFGED-FSHEKCQLCDVC 678
++ TK++ + + +Y + CR +++E+F E +C CD C
Sbjct: 494 FSGDFYTKGLTKESLQTQLNSTEKLKQYAIEREKCRRAMILEHFEETPLFGSQCGTCDNC 553
Query: 679 V 679
+
Sbjct: 554 I 554
>gi|393763185|ref|ZP_10351808.1| ATP-dependent DNA helicase RecQ [Alishewanella agri BL06]
gi|392606102|gb|EIW88990.1| ATP-dependent DNA helicase RecQ [Alishewanella agri BL06]
Length = 606
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 138/217 (63%), Gaps = 21/217 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK+ FG+SS ++ Q E ++A LA DC VL TG GKSLC+Q+PAL KV VV+SPL+S
Sbjct: 9 LKQIFGYSSWRDGQAEIIAAALAGRDCFVLLPTGGGKSLCYQLPALQLPKVTVVVSPLMS 68
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMY---SIIYVCPETVIRLIKP--LQ 279
LM DQ L +G+ A ++ S V + + Y ++YV PE RL++P ++
Sbjct: 69 LMKDQVDTLQANGIAAAYVNSSLSREAVLEVLNQLRYDELKLLYVAPE---RLLQPQFIE 125
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
RL E G++LFAIDE HCVS+WGHDFRPDY L+ LR++F +P+MALTAT
Sbjct: 126 RLQEV-GVSLFAIDEAHCVSQWGHDFRPDYMALAQLRQHFPG---------VPVMALTAT 175
Query: 340 ATIQVREDILKSLHMSKGTKFV-LTSFFRPNLRFSVK 375
A ++DI++ L + + F+ SF RPN+R++V+
Sbjct: 176 ADPATQQDIVQQLALQQ--PFIHRGSFDRPNIRYTVQ 210
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 122/232 (52%), Gaps = 7/232 (3%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
+P E+L + E+ IIY +R++ + L G KAAAY+A + ++V
Sbjct: 214 RPLEQLLAYLKQQENHSGIIYCSSRRKVDELTAQLQEKGFKAAAYHAGHDATHRQQVQDA 273
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + L ++VAT+AFGMG+DK N+R ++H+ P+++EAYYQE GRAGRDG A+ +L
Sbjct: 274 FKRDDLALIVATVAFGMGVDKPNIRFVVHFELPRTIEAYYQETGRAGRDGVAAEALLLFD 333
Query: 616 -ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL 674
A++ M L + + + + ++ + CR +L+ YFGE + C
Sbjct: 334 PADIGRMKRWLQTEENNLRAEVTWQRFLSMAAFA-EAQTCRRLVLLNYFGEA-RQQPCGN 391
Query: 675 CDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMD 726
CD+C++ PP+ + E A + + N Q+ + + G + QK +D
Sbjct: 392 CDICLN-PPQRFDGTELAQKALSCVYRVN-QNFGLHHVIEVLRGSQSQKVLD 441
>gi|317477615|ref|ZP_07936833.1| ATP-dependent DNA helicase RecQ [Bacteroides eggerthii 1_2_48FAA]
gi|316906220|gb|EFV27956.1| ATP-dependent DNA helicase RecQ [Bacteroides eggerthii 1_2_48FAA]
Length = 604
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 130/216 (60%), Gaps = 20/216 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + L +D LVL TG GKS+C+Q+PALL VV+SPLIS
Sbjct: 5 LKTYFGYDSFRPLQEEIIRHILGGNDALVLMPTGGGKSICYQLPALLREGTAVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVIRLIKPLQ 279
LM DQ L +G++A L S +++ E ALR G ++Y+ PE +L+
Sbjct: 65 LMKDQVEALCANGISAGALNSS--NDETENAALRRACMEGKLKLLYISPE---KLLAEAN 119
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L I+LFAIDE HC+S+WGHDFRP+Y ++ +L + F +P++ALTAT
Sbjct: 120 YLLRDMHISLFAIDEAHCISQWGHDFRPEYAQMGILHQQFP---------QVPIIALTAT 170
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A REDI+K LH++ F+ +SF RPNL +VK
Sbjct: 171 ADKITREDIIKQLHLNHPRIFI-SSFDRPNLSLTVK 205
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 114/180 (63%), Gaps = 9/180 (5%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566
+ P E G IIY +R +T S+A+ L G++AA Y+A L ++ +F ++++VV
Sbjct: 223 RHPGESG--IIYCMSRSKTESVAQMLQKQGIRAAVYHAGLSPTRRDEAQDDFINDRVQVV 280
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLP 626
ATIAFGMGIDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +LS + +L
Sbjct: 281 CATIAFGMGIDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTLLFYSLSDL--ILL 338
Query: 627 SRRSEDQTKQAYRM--LSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
++ + D +Q+ + L +Y + CR +IL+ YFGE +H+ C CDVC PPE
Sbjct: 339 TKFATDSGQQSINIEKLQRMQQYA-ESDICRRRILLSYFGETATHD-CGNCDVC-KNPPE 395
>gi|340383049|ref|XP_003390030.1| PREDICTED: Bloom syndrome protein homolog [Amphimedon
queenslandica]
Length = 1085
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 132/224 (58%), Gaps = 20/224 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ ++ FG + Q EA++A + +C +L TG GKSLC+Q+PALL V +V+SPL
Sbjct: 445 VFREKFGLQEFRPNQLEAINAAVLGKNCFILMPTGGGKSLCYQLPALLLDGVTIVVSPLR 504
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKA------LRGMYSIIYVCPETV---IRL 274
SL+ DQ KL+ ++AC L SG+ E + L ++YV PE + +L
Sbjct: 505 SLIQDQVQKLNSLEISACHL-SGEYSQSEELRVYTELSRLDPGIKLLYVTPEKLAASTKL 563
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+K LQ L I+ F IDE HC+S+WGHDFRPDY+RLS LR+ F +P M
Sbjct: 564 LKTLQSLYSRGKISRFVIDEAHCISQWGHDFRPDYKRLSELRQQFP---------QVPTM 614
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
ALTATAT +VR DIL L +S TK+ SF R NL +SV+H K
Sbjct: 615 ALTATATPRVRADILYQLKLSH-TKWFTQSFNRTNLAYSVRHKK 657
>gi|168052509|ref|XP_001778692.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669907|gb|EDQ56485.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 521
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 133/215 (61%), Gaps = 16/215 (7%)
Query: 166 KKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISL 225
KK FG+ S + Q+E ++A ++ D VL TG GKSL +Q+PA+ + V +V+SPL+SL
Sbjct: 7 KKFFGNKSFRLNQREIINATMSGRDVFVLMPTGGGKSLTYQLPAICSAGVTLVVSPLVSL 66
Query: 226 MHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVI---RLIKPLQ 279
+ DQ LS+ + A +L Q N++ + G+Y ++YV PE + RL + L
Sbjct: 67 IMDQIMHLSEANIPAAYLSGTMEWQEQNEILRNLDAGVYKLLYVTPEKIARSDRLSQHLT 126
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L + R +A +DE HCVS+WGHDFRPDY+ L V +E F D+PL+ALTAT
Sbjct: 127 SLYDQRLLARIVVDEAHCVSQWGHDFRPDYQNLGVFKERFP---------DVPLIALTAT 177
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
AT+ V+ED++++L +++ F T F RPNLR+ V
Sbjct: 178 ATLSVKEDVVRALKLTRCIIFRQT-FNRPNLRYEV 211
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 118/242 (48%), Gaps = 29/242 (11%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566
+ P E G IIY +R + + + L FG K A Y+ + + V + ++++ ++
Sbjct: 229 RHPNESG--IIYCLSRSDCEKVTEKLREFGHKVAFYHGQMDPDERSYVQRMWSKDEVNII 286
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY----------- 615
AT+AFGMGI+K +VR +IH+ P+SLE Y+QE+GRAGRD A C+LY
Sbjct: 287 CATVAFGMGINKPDVRFVIHHSLPKSLEGYHQESGRAGRDNLPASCILYYTYADSIRLKH 346
Query: 616 ------ANLSSMPTLLPSRR--SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGE-D 666
A L S + + + +Q L+ Y N CR + + +FGE D
Sbjct: 347 MLTQGAAELGSTGSSFRNHNTVTSNQLSTNLDNLNRMIGYCQNDIDCRRSLQLAHFGEMD 406
Query: 667 FSHEKCQ-LCDVCV----DGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKK 721
F C+ CD C G E +++ E A L+Q++ A ++S SM ++ G
Sbjct: 407 FDVSSCKGTCDNCARMGNSGSVE-EDVSETARQLVQLVGAMGQRS-SMTHIVDVFRGSLN 464
Query: 722 QK 723
Q+
Sbjct: 465 QQ 466
>gi|389798157|ref|ZP_10201184.1| ATP-dependent DNA helicase RecQ [Rhodanobacter sp. 116-2]
gi|388445812|gb|EIM01870.1| ATP-dependent DNA helicase RecQ [Rhodanobacter sp. 116-2]
Length = 609
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 131/222 (59%), Gaps = 15/222 (6%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LL+ FG+ S + Q+ + D LVL TG GKSLC+QIPALL +V+SPLI
Sbjct: 8 LLQSVFGYPSFRGQQQAVVEHLGEGGDALVLMPTGGGKSLCYQIPALLRQGTGIVVSPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LM DQ L + GV A +L S + +VE++ L G +++YV PE + L Q
Sbjct: 68 ALMQDQVDALREAGVAAAYLNSSLGAEAQREVERQLLAGELNLLYVAPERL--LTSRFQG 125
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L ES +ALFAIDE HCVS+WGHDFRP+YR L++L + F +P +ALTATA
Sbjct: 126 LLESIEVALFAIDEAHCVSQWGHDFRPEYRELAILHQRFP---------QVPRIALTATA 176
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
+ RE+I++ L + +FV +SF RPN+ + V + R
Sbjct: 177 DPRTREEIVERLSLQHARQFV-SSFDRPNIGYRVGLRHNAKR 217
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 91/172 (52%), Gaps = 5/172 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A +L GV+A Y+A L + + F V+VAT+AFGMG
Sbjct: 232 IVYCLSRRKVDDTAAWLAESGVEALPYHAGLDAATRAKNQQRFLREDGVVMVATVAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS---SMPTLLPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG A+ + LS +M ++ S D
Sbjct: 292 IDKPDVRFVAHLDLPRSIEGYYQETGRAGRDGLPAEAWMIYGLSDVVTMSQMIAQSESAD 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ K+ R + + CR ++L+ FGE + C CD C+ PP+
Sbjct: 352 ERKRVERQKLESLLAYAEATGCRRQLLLGAFGEVYPG-PCGHCDNCL-APPK 401
>gi|297538336|ref|YP_003674105.1| ATP-dependent DNA helicase RecQ [Methylotenera versatilis 301]
gi|297257683|gb|ADI29528.1| ATP-dependent DNA helicase RecQ [Methylotenera versatilis 301]
Length = 609
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 129/211 (61%), Gaps = 15/211 (7%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG+S+ + Q+ + A D LVL TG GKSLC+Q+PALL V +V+SPLI+LM D
Sbjct: 14 FGYSTFRGEQQAIVEHVTAGGDALVLMPTGGGKSLCYQLPALLREGVGIVVSPLIALMQD 73
Query: 229 QCSKLSKHGVTACFLGSGQPDNKVEQ---KALRGMYSIIYVCPE--TVIRLIKPLQRLAE 283
Q L + GV A FL S Q ++ + + +RG I+YV PE + + L + E
Sbjct: 74 QVDALKQLGVRAAFLNSSQDADEAREITAQLMRGHLQIVYVAPERLLMSSFLSLLDEIEE 133
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GIALFAIDE HCVS+WGHDFRP+YR+L+VL E F +P +ALTATA
Sbjct: 134 GAGIALFAIDEAHCVSQWGHDFRPEYRKLTVLHERFP---------HVPRIALTATADAP 184
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
R +I++ L + + +FV +SF RPN+++ V
Sbjct: 185 TRAEIVERLKLEEARQFV-SSFDRPNIKYRV 214
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 87/167 (52%), Gaps = 4/167 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ A++L G A Y+A L S + F + ++VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEETAEWLKSRGWDALPYHAGLDASVRNQNQRRFLREEGVIMVATVAFGMG 297
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS---SMPTLLPSRRSED 632
IDK NVR + H P+S+E YYQE GRAGRD A+ + L SM +L S + +
Sbjct: 298 IDKPNVRFVAHLDLPKSMEGYYQETGRAGRDDLPANAWMTYGLGDVVSMRKMLDSGDAPE 357
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ K R D ++ CR + L+ YFGE C+ CD C+
Sbjct: 358 ERKAVERQKLDALLGFCESTSCRHQTLLRYFGETHPG-NCEQCDNCL 403
>gi|398806409|ref|ZP_10565317.1| ATP-dependent DNA helicase RecQ [Polaromonas sp. CF318]
gi|398088326|gb|EJL78892.1| ATP-dependent DNA helicase RecQ [Polaromonas sp. CF318]
Length = 627
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 138/228 (60%), Gaps = 19/228 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVI 219
+L + FG+ S + Q+ + + D LVL TG GKSLC+QIPA++ + V VVI
Sbjct: 15 VLAEVFGYDSFRGPQQAIVDHVVRGGDALVLMPTGGGKSLCYQIPAIVRQQAGHGVTVVI 74
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETV--IRL 274
SPLI+LMHDQ L + GV+A FL S Q +++E++ LR +++Y PE + R+
Sbjct: 75 SPLIALMHDQVGALHEAGVSAAFLNSTQSFDESSQLEKQLLRNELTLLYAAPERINTPRM 134
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
L L E ++LFAIDE HCVS+WGHDFRP+YR LS+L E F D+P +
Sbjct: 135 KGLLVSLHERGLLSLFAIDEAHCVSQWGHDFRPEYRSLSLLHETFP---------DVPRI 185
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
ALTATA R+D+++ L + +FV +SF RPN+R+++ +R
Sbjct: 186 ALTATADALTRQDMIERLKLEDARQFV-SSFDRPNIRYTIVEKTDPTR 232
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 133/283 (46%), Gaps = 19/283 (6%)
Query: 491 ERTDLLNKPAERLSMLQEPLEDG-LTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKS 549
E+TD P +L E +G I+Y +RK IA L G+KA AY+A L +
Sbjct: 226 EKTD----PTRQLLRFIETEHEGEAGIVYCQSRKRVEEIAGMLQDAGLKALAYHAGLDSA 281
Query: 550 QLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609
++ F ++VATIAFGMGIDK +VR + H P+++E YYQE GRAGRDG
Sbjct: 282 LRQQRQDRFLREDGIIMVATIAFGMGIDKPDVRFVAHLDMPKNIEGYYQETGRAGRDGQS 341
Query: 610 ADCVLYANLSSMPT----LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGE 665
AD + L + + S + ++ KQ R D + CR L+ YFGE
Sbjct: 342 ADAWMVYGLQDVVNQRRMIDTSEAASEEFKQVMRGKLDALLTLAEDTRCRRVSLLGYFGE 401
Query: 666 DFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFM 725
D + C CD C++ PP + + E A ++ I +Q++ + G I + K
Sbjct: 402 D--SQPCGNCDNCLN-PPAVWDATEAARKMLSCIYRV-QQASGISFGAGHIMDILRGKMT 457
Query: 726 DRPNLKMFVSKIREQSQKYLATDL--LWWRGLARIMENKGYIR 766
D KM + S + DL WRG+ R + + +R
Sbjct: 458 D----KMAQYGHDQLSTFGIGADLAEAQWRGVLRQLIARNMVR 496
>gi|440733531|ref|ZP_20913242.1| DNA helicase superfamily II protein [Xanthomonas translucens
DAR61454]
gi|440360758|gb|ELP98016.1| DNA helicase superfamily II protein [Xanthomonas translucens
DAR61454]
Length = 602
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/226 (43%), Positives = 137/226 (60%), Gaps = 19/226 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+S+L + FG+ + Q++ + A D LVL TG GKSLC+QIP+LL +VISP
Sbjct: 6 HSVLNRVFGYDQFRGPQQDIVEHVAAGQDALVLMPTGGGKSLCYQIPSLLRDGTGLVISP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP- 277
LI+LM DQ L + GV A +L S + +VE++ L G ++YV PE RL+ P
Sbjct: 66 LIALMQDQVEALRQLGVRAEYLNSTLDAETAQRVERELLAGELDLLYVAPE---RLLTPR 122
Query: 278 -LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L L SR IALFAIDE HCVS+WGHDFRP+YR+L+VL E + IP +AL
Sbjct: 123 FLSLLERSR-IALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------QIPRIAL 172
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
TATA + +I + L +++ FV +SF RPN+R++V + S R
Sbjct: 173 TATADPPTQREIAERLDLTQARHFV-SSFDRPNIRYTVVQKENSKR 217
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A++L G+ A Y+A LP F V+ ATIAFGMG
Sbjct: 232 IVYCMSRRKVEETAEFLAKEGLNALPYHAGLPAEVRAGNQRRFLREDGIVMCATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL----PSRRSE 631
IDK +VR + H P+SLE YYQE GRAGRDG A+ L L + L E
Sbjct: 292 IDKPDVRFVAHTDLPKSLEGYYQETGRAGRDGEAAEAWLCYGLGDVVLLKQMIEKGEAGE 351
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
D+ + R L Y + CR ++L+ FGE + + C CD C+
Sbjct: 352 DRKRVERRKLDQLLGY-CESMQCRRQVLLAGFGETYP-QPCGNCDNCL 397
>gi|426359284|ref|XP_004046910.1| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase [Gorilla gorilla gorilla]
Length = 1429
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 127/212 (59%), Gaps = 12/212 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K+ Q + + + L D + + ATG GKSLCFQ P + GK+ +VISPLI
Sbjct: 537 LKMYFGHSSFKSVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLI 596
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q +N + L G Y I+YV PE + LQ+L
Sbjct: 597 SLMEDQVLQLKMSNIPACFLGSAQSENVLTDIKL-GKYRIVYVTPEYCSGNMGLLQQLEA 655
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GI L A+DE HC+S+WGHDFR +R+L L+ +P++ALTATA+
Sbjct: 656 DIGITLIAVDEAHCISEWGHDFRNSFRKLGSLKTALPM---------VPIVALTATASSS 706
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+REDI++ L++ + + T F RPNL V+
Sbjct: 707 IREDIVRCLNL-RNPQITCTGFDRPNLYLEVR 737
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S + +H F ++++ V+ATIA
Sbjct: 761 EGPTIIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIA 820
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ A+++ LL
Sbjct: 821 FGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEI 880
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
R+E +M++ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 881 RNEKFRLYKLKMMAKMEKY-LHSSRCRRQIILSHF-EDKQVQKASLGIMGTEKCCDNC 936
>gi|375109707|ref|ZP_09755949.1| ATP-dependent DNA helicase [Alishewanella jeotgali KCTC 22429]
gi|374570229|gb|EHR41370.1| ATP-dependent DNA helicase [Alishewanella jeotgali KCTC 22429]
Length = 605
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 135/218 (61%), Gaps = 19/218 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++LK+ FG+SS +N Q+E +SA L DC VL TG GKSLC+Q+PAL V +V+SPL
Sbjct: 7 AVLKQSFGYSSWRNGQQEIISAVLQGRDCFVLLPTGGGKSLCYQLPALQLPGVTLVVSPL 66
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ--KALR-GMYSIIYVCPETVIRLIKP-- 277
+SLM DQ L +G+ A ++ S V LR G ++YV PE RL++P
Sbjct: 67 MSLMKDQVDSLRANGIAAAYVNSSLSREAVLDVLNQLRYGELKLLYVAPE---RLLQPSF 123
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L+RL E G++LFAIDE HC+S+WGHDFRPDY LS L++ F +P +ALT
Sbjct: 124 LERLQEV-GVSLFAIDEAHCISQWGHDFRPDYMALSQLKQRFPG---------VPFIALT 173
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
ATA ++DIL+ L +S SF RPN+R++V+
Sbjct: 174 ATADPATQQDILQQLGLSN-PYIHRGSFDRPNIRYTVQ 210
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 105/191 (54%), Gaps = 5/191 (2%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
+P E+L + E+ IIY +R++ + L G K AAY+A ++ +RV
Sbjct: 214 RPLEQLLAYLKQQENQSGIIYCSSRRKVDELTAQLQERGYKVAAYHAGHDSTERQRVQDA 273
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + + ++VAT+AFGMG+DK N+R ++H+ P+++EAYYQE GRAGRDG A+ VL
Sbjct: 274 FKRDDINLIVATVAFGMGVDKPNIRFVVHFELPRTIEAYYQETGRAGRDGVAAEAVLLFD 333
Query: 616 -ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL 674
A++ M L + + + + ++ + CR +L+ YFGE + C
Sbjct: 334 PADIGRMKRWLEAEENPGRAEVVWQRFLSMAAFA-EAQTCRRLVLLNYFGEA-RQQACGN 391
Query: 675 CDVCVDGPPEM 685
CD+C++ P +
Sbjct: 392 CDICLNPPQQF 402
>gi|449681877|ref|XP_002160535.2| PREDICTED: putative ATP-dependent RNA helicase R290-like [Hydra
magnipapillata]
Length = 636
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 131/215 (60%), Gaps = 13/215 (6%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LLK++FGH K FQ + + ++ D + + TG GKSLCFQ+P L+TG+V +VISPLI
Sbjct: 130 LLKENFGHDDFKPFQYKIIDNIVSGTDVVAVMPTGYGKSLCFQMPPLITGEVAIVISPLI 189
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LM DQ L K G+++C S NK +E L+G+Y I+Y+ PE++ + R
Sbjct: 190 ALMADQKMILDKLGMSSCCYNSTLCQNKKREIEDGLLKGLYRILYITPESLALSSALIDR 249
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
+ E +GI + AIDE HC+S +G DFRP YR + N K LK D+P++A+TATA
Sbjct: 250 IYEFQGICMIAIDEAHCLSSYGFDFRPKYREI--------VNTRKFLK-DVPVLAVTATA 300
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
T +V DI + M K + TSF RPNL +VK
Sbjct: 301 TNKVIADIQTVMEM-KNNILIKTSFDRPNLTINVK 334
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 96/170 (56%), Gaps = 4/170 (2%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G IIY T+ +T +A+ L GV A AY++ L K ++ +F ++ + ATIA
Sbjct: 352 NGPAIIYCLTKNDTEMMAEKLRDAGVDAKAYHSGLNKDDRFKIQEQFMNSEYSCITATIA 411
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSR 628
FGMGI+K ++R +IHYG PQ++E+YYQE GRAGRD + C ++ + +
Sbjct: 412 FGMGINKPDIRAVIHYGCPQNIESYYQEIGRAGRDCKESSCHMFYKQKDFIIQQKFIDDI 471
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVC 678
++ D K +L Y +NT+ CR K ++ YFG++ + C CD C
Sbjct: 472 KNPDYKKVRNNLLQVISSY-VNTNECRRKYILNYFGQNTDNIMCGKCDNC 520
>gi|91786081|ref|YP_547033.1| ATP-dependent DNA helicase RecQ [Polaromonas sp. JS666]
gi|91695306|gb|ABE42135.1| ATP-dependent DNA helicase RecQ [Polaromonas sp. JS666]
Length = 633
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 137/228 (60%), Gaps = 19/228 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVI 219
+L + FG+S + Q+ + + D LVL TG GKSLC+QIPA++ V VVI
Sbjct: 20 ILGQVFGYSEFRGPQEAIVEHVVQGGDALVLMPTGGGKSLCYQIPAIVRQNAGHGVTVVI 79
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETV--IRL 274
SPLI+LMHDQ L + GV+A FL S Q +++E++ LR +++Y PE + R+
Sbjct: 80 SPLIALMHDQVGALHEAGVSAAFLNSTQSFEESSQLEKQLLRNELTLLYAAPERINTPRM 139
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
L L E ++LFAIDE HCVS+WGHDFRP+YR LS+L E F D+P +
Sbjct: 140 KGLLASLHERGLLSLFAIDEAHCVSQWGHDFRPEYRSLSLLHETFP---------DVPRI 190
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
ALTATA R+D+++ L + +FV +SF RPN+R+++ +R
Sbjct: 191 ALTATADALTRQDMIERLKLEDAREFV-SSFDRPNIRYTIVEKADPTR 237
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 109/227 (48%), Gaps = 14/227 (6%)
Query: 484 RDTDRSFERTDLLNKPAER-------LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG 536
R+ SF+R ++ E+ L ++ E I+Y +RK IA L G
Sbjct: 214 REFVSSFDRPNIRYTIVEKADPTRQLLRFIESEHEGEAGIVYCQSRKRVEEIAATLQDAG 273
Query: 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAY 596
+KA AY+A L S ++ F V+VATIAFGMGIDK +VR + H P+++E Y
Sbjct: 274 LKALAYHAGLDASLRQQRQDRFLREDGVVMVATIAFGMGIDKPDVRFVAHLDMPKNIEGY 333
Query: 597 YQEAGRAGRDGHLADCVLYANLSSMPT----LLPSRRSEDQTKQAYRMLSDCFRYGMNTS 652
YQE GRAGRDG A+ + L + + S + ++ KQ R D +
Sbjct: 334 YQETGRAGRDGLPANAWMAYGLQDVVNQRRMIDTSDAASEEFKQVMRGKLDALLSLAEDT 393
Query: 653 CCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
CR L+ YF E+ + C CD C+ PP + + E A ++ I
Sbjct: 394 RCRRVSLLHYFDEE--SQPCGNCDNCLS-PPAVWDATEAARKMLSCI 437
>gi|345429420|ref|YP_004822538.1| ATP-dependent DNA helicase [Haemophilus parainfluenzae T3T1]
gi|301155481|emb|CBW14947.1| ATP-dependent DNA helicase [Haemophilus parainfluenzae T3T1]
Length = 621
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 135/224 (60%), Gaps = 15/224 (6%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
+D + ++L+ FG+ S + Q+E + A L+ D LV+ ATG+GKSLC+QIPAL
Sbjct: 12 TDLKTTALNMLRSVFGYQSFRKGQEEVIHAALSGQDALVVMATGNGKSLCYQIPALCFPG 71
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQ-PD--NKVEQKALRGMYSIIYVCPETV 271
+ +VISPLISLM DQ +L +G+ A FL S Q P+ +VE K + G ++YV PE V
Sbjct: 72 LTLVISPLISLMKDQVDQLQANGIEADFLNSSQTPEQQQQVENKLISGQLKLLYVSPEKV 131
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
+ +L I+ AIDE HC+S+WGHDFRP+Y +L L+ F +
Sbjct: 132 --MTNSFFQLISYAQISFIAIDEAHCISQWGHDFRPEYTQLGGLKAAFP---------NA 180
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
P+MALTATA R+DIL L + K++ SF RPN+R++++
Sbjct: 181 PIMALTATADYATRQDILTHLKLDHPHKYI-GSFDRPNIRYTLE 223
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 144/273 (52%), Gaps = 13/273 (4%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + I+Y +R + IA+ L GV AAAY+A + + RV +
Sbjct: 227 KPMEQLTRFVLAQKGKSGIVYCNSRSKVERIAETLRNKGVSAAAYHAGMETALRERVQQD 286
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 287 FQRDNIQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 346
Query: 618 LSSMPTL--LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLC 675
L+ L + +SE +Q + + + CR +L+ YFGE CQ C
Sbjct: 347 LADYAWLQKILLEKSETPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEH-RQTPCQNC 405
Query: 676 DVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVS 735
D+C+D P + L + ++ + Q + + G+ QK ++R + K+ V
Sbjct: 406 DICLDPPKKYDGLIDAQKVMSTIYRV--GQCFGVQYVIAVLRGMHNQKILERQHDKLSVY 463
Query: 736 KI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
I +++S+++ W+ + R + + G+I++
Sbjct: 464 GIGKDKSKEH-------WQSVIRQLIHLGFIQQ 489
>gi|294495880|ref|YP_003542373.1| ATP-dependent DNA helicase RecQ [Methanohalophilus mahii DSM 5219]
gi|292666879|gb|ADE36728.1| ATP-dependent DNA helicase RecQ [Methanohalophilus mahii DSM 5219]
Length = 599
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 144/249 (57%), Gaps = 24/249 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L +FG+ + + Q+ + L D VL TG GKSLC+Q+P+LL V VV+SPLIS
Sbjct: 5 LYDYFGYDTFRPLQENIIQDVLNKKDVFVLMPTGGGKSLCYQLPSLLMEGVTVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKP--LQ 279
LM DQ +L HG+ A ++ S +++ V+ +RG ++YV PE RL P L+
Sbjct: 65 LMKDQVDRLLSHGIAAAYMNSTLDNSEMSHVKDSLIRGKLDLLYVAPE---RLAMPSTLK 121
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
LA+ + LFA+DE HC+S+WGHDFRP+YR+L LR F ++PL+ALTAT
Sbjct: 122 LLAKV-NVNLFAVDEAHCISQWGHDFRPEYRKLGALRSGFP---------NVPLIALTAT 171
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR--ASYKK---DFCQLID 394
AT V DI K L+M + K+V SF R NL + VK + + + SY + + C +I
Sbjct: 172 ATPAVARDITKQLNMVRSEKYV-ASFNRSNLYYEVKSGENADQQITSYLRSHPESCGIIY 230
Query: 395 IYTKKKKTG 403
T+K G
Sbjct: 231 CQTRKSVEG 239
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 107/193 (55%), Gaps = 6/193 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY TRK +A L GV AA Y+A + R +F + + VVVAT+AFGMG
Sbjct: 228 IIYCQTRKSVEGLAGRLKKLGVNAAFYHAGMSDELRHRAQEKFLDGTIRVVVATVAFGMG 287
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
IDK NVR ++HY P LE+YYQ+ GR GRDG DC+L+ + + S+
Sbjct: 288 IDKSNVRFVMHYDLPADLESYYQQTGRGGRDGQPCDCILFFKRGDWYKQQYFIEQMSSKK 347
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ + A L Y + + CR KIL+EYFGE + C CDVC++ PP+ ++ E+A
Sbjct: 348 EREIALSKLRHMMDYCESVT-CRRKILLEYFGES-AESDCDYCDVCLN-PPQQVDVTEDA 404
Query: 693 NILMQVIAAYNEQ 705
I+ + I N++
Sbjct: 405 LIIFKCIKELNQK 417
>gi|443322394|ref|ZP_21051417.1| ATP-dependent DNA helicase RecQ [Gloeocapsa sp. PCC 73106]
gi|442787869|gb|ELR97579.1| ATP-dependent DNA helicase RecQ [Gloeocapsa sp. PCC 73106]
Length = 701
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/251 (37%), Positives = 146/251 (58%), Gaps = 28/251 (11%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ S LK+ FGH + Q++ ++ L + D LV+ TG GKSLC+Q+PALL + +V+S
Sbjct: 4 LKSALKRFFGHDVFRPLQEQIIAEVLNNRDLLVIMPTGGGKSLCYQLPALLKPGLTLVVS 63
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKA---LRGMYSIIYVCPETVIRLIKP 277
PLISLM DQ + L G+ A FL S +++ ++ L+G ++YV PE RL+
Sbjct: 64 PLISLMQDQVNALKDRGIGATFLNSSLNSQEIQSRSREILQGNIKLLYVAPE---RLLSE 120
Query: 278 -----LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
L ++ + GI+ AIDE HCVS+WG DFRP+YR++ LR+ + +P
Sbjct: 121 GFSVFLTQIQQDVGISALAIDEAHCVSEWGQDFRPEYRQIKGLRQRYP---------QVP 171
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQL 392
++ALTATAT +VR+DI++ L + K +V SF RPNL + V K+D+ QL
Sbjct: 172 MVALTATATTRVRQDIIQQLGLIKPGVYV-DSFNRPNLYYEVVSKD-------KRDYPQL 223
Query: 393 IDIYTKKKKTG 403
+ ++ +G
Sbjct: 224 LKYIKLQQGSG 234
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 116/218 (53%), Gaps = 7/218 (3%)
Query: 510 LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVAT 569
L+ G I+Y +R+ +A L G+ + Y+ + + F + + V+VAT
Sbjct: 229 LQQGSGIVYCLSRRRVEEVASRLQADGISSLPYHGGMDDTVRSVYQNRFIGDDVRVMVAT 288
Query: 570 IAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLP 626
IAFGMGI+K +VR + HY P++LE+YYQE GRAGRDG A CVL+ ++ ++ L+
Sbjct: 289 IAFGMGINKPDVRFVFHYDLPRNLESYYQEVGRAGRDGERAICVLFFSRGDIRTIDYLIK 348
Query: 627 SRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMK 686
+ + A + LS Y +T CR KI + YFGE FS CQ CD C++ P+ +
Sbjct: 349 QKSDPSAQRLARQGLSSMVDYAEST-VCRRKIQLSYFGERFSGS-CQNCDNCLNPKPQ-E 405
Query: 687 NLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKF 724
+ EA + +A E+ M+ + G +K+K
Sbjct: 406 DWTIEAQKFLSCVARCQERFG-MNHIIDVLRGSRKEKI 442
>gi|157963641|ref|YP_001503675.1| ATP-dependent DNA helicase RecQ [Shewanella pealeana ATCC 700345]
gi|157848641|gb|ABV89140.1| ATP-dependent DNA helicase RecQ [Shewanella pealeana ATCC 700345]
Length = 607
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 135/220 (61%), Gaps = 20/220 (9%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+++S L+ FG+ + + Q+E + A DCLV+ TG GKSLC+Q+PAL+ + VV+
Sbjct: 12 QLSSTLQSVFGYRTFREGQREVIEQICAGQDCLVIMPTGGGKSLCYQLPALVLPGLTVVV 71
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ L + GV+A +L S P +V QK G ++YV PE RL++
Sbjct: 72 SPLISLMKDQVDSLIQTGVSAAYLNSSLPREESLQVLQKMRYGELKLLYVSPE---RLLQ 128
Query: 277 P--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ RL E ++LFAIDE HC+S+WGHDFRP+Y L LR+ F +P+M
Sbjct: 129 ASFIDRLHEL-NVSLFAIDEAHCISQWGHDFRPEYAALGRLRQQFP---------QVPIM 178
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA R DI + L ++ + +LTSF RPN+R++V
Sbjct: 179 ALTATADKATRADICERLTITPHS--LLTSFDRPNIRYTV 216
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 122/216 (56%), Gaps = 11/216 (5%)
Query: 489 SFERTDLLNKPAERLSMLQE-----PLEDGLT-IIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ AE+L+ + ++G + I+Y +R+ +A+ L G +A AY
Sbjct: 206 SFDRPNIRYTVAEKLNAANQLRQFVDAQNGASGIVYCSSRRRVDEVAERLRLQGHQAEAY 265
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A + + V +F +++L++VVAT+AFGMGI+K NVR ++HY P+S+E+YYQE GR
Sbjct: 266 HAGKTQEERAEVQDKFLKDQLDIVVATVAFGMGINKSNVRYVVHYDIPKSVESYYQETGR 325
Query: 603 AGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG ++ ++ A++ + L+ Q + + L+ + CR ++L
Sbjct: 326 AGRDGLDSEALMLFDPADIGRVRHLIEQSEPGPQQQVEFHKLNTMAAFA-EAQTCRRQVL 384
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
+ YF E + + C CD+C+D P + +++ +L
Sbjct: 385 LHYFDEP-ALKACGNCDICLDPPKKYNGIQDAQKVL 419
>gi|160943678|ref|ZP_02090910.1| hypothetical protein FAEPRAM212_01173 [Faecalibacterium prausnitzii
M21/2]
gi|158445133|gb|EDP22136.1| putative ATP-dependent DNA helicase RecQ [Faecalibacterium
prausnitzii M21/2]
Length = 525
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 135/236 (57%), Gaps = 19/236 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+S+LKK FG+ S + Q+E +S LA D L + TG+GKS+C+Q+PALL + +V+SP
Sbjct: 5 HSILKKVFGYDSFRPGQEEIVSRLLAGQDVLAVMPTGAGKSICYQVPALLLPGITIVVSP 64
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKP- 277
L+SLM DQ L + GV A FL + DN+ + +A G Y IIYV PE RL P
Sbjct: 65 LVSLMKDQVGALVQAGVAAAFLNNSLTDNQKALMLHRAREGWYKIIYVAPE---RLEMPG 121
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
QR A+ R I++ +DE HC+S+WG DFRP Y R+ + + + + A T
Sbjct: 122 FQRFAQERQISMVTVDEAHCISQWGQDFRPSYLRIKEFVDGLPSRPV--------IGAFT 173
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLI 393
ATAT VREDI L + + V TSF RPNL F + + S + K+ +L+
Sbjct: 174 ATATAHVREDIRTHLALQAPYE-VTTSFDRPNLYFETRRALPSQK---PKELLELV 225
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 29/222 (13%)
Query: 489 SFERTDLL---------NKPAERLSMLQEPLEDG--LTIIYVPTRKETLSIAKYLCGFGV 537
SF+R +L KP E L ++ L++G I+Y T ++ + L +
Sbjct: 199 SFDRPNLYFETRRALPSQKPKELLELV---LKEGNHAGIVYCSTTRQVDETVQLLQSRSI 255
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
+AAAY+A L R+ +F ++++V+VAT AFGMGIDK NVR +IHY P+ LE+YY
Sbjct: 256 RAAAYHAKLDADTRRQNQDDFLYDRVQVMVATNAFGMGIDKPNVRFVIHYNMPKDLESYY 315
Query: 598 QEAGRAGRDGHLADCVLYANLSSMPTL-------------LPSRRSEDQTKQAYRMLSDC 644
QEAGRAGRDG A C L + + + T+ LP+ + ++A L
Sbjct: 316 QEAGRAGRDGQPARCTLLYSGTDVRTIRFFIDKEREADNGLPADVKAEAARKAEERLKYM 375
Query: 645 FRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMK 686
Y C R L++YFGE + +KC C C+ E +
Sbjct: 376 TFYSTTQHCLRG-FLLQYFGEA-APKKCGNCSCCLAAEQEAQ 415
>gi|148241552|ref|YP_001226709.1| ATP-dependent DNA helicase [Synechococcus sp. RCC307]
gi|147849862|emb|CAK27356.1| ATP-dependent DNA helicase [Synechococcus sp. RCC307]
Length = 530
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 134/217 (61%), Gaps = 19/217 (8%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L++HFG+S + Q+E + A L DCL + TG+GKSLC+Q+PAL+ G VV+VISPL++
Sbjct: 12 LQQHFGYSDFRPGQREVVEALLEGRDCLAVLPTGAGKSLCYQLPALVRGGVVLVISPLVA 71
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETV----IRLIKP 277
LM DQ ++L + G+ A L +G P K++Q+ +G ++Y+ PE + R +
Sbjct: 72 LMQDQVAQLRRRGIAAACLHNGLPLQELRKLQQQIQQGTLRLLYLAPERLQGEACRQL-- 129
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L+ L + R + A+DE HC+S WGHDFRPDYRRL L+ L +PL+AL+
Sbjct: 130 LEDLHDQRQLVALAVDEAHCISNWGHDFRPDYRRL---------GQLRRLCPGVPLVALS 180
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ATA +VR DI++ L + + V S RPNLR+ +
Sbjct: 181 ATAPPRVRADIIRLLSLRRPLIQV-RSAQRPNLRYRM 216
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 101/224 (45%), Gaps = 10/224 (4%)
Query: 484 RDTDRSFERTDLLNKPAERLSMLQEPLED--GLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
R R R +L +P + L ++ G +IY TR+ A L G+ A A
Sbjct: 205 RSAQRPNLRYRMLWRPEDPLELVLAEARSARGAVLIYSRTRRGVERWAAKLRQAGLPALA 264
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A + +F E V+VAT+AFGMG+D+ +V ++H P S E Y QE+G
Sbjct: 265 YHAGMDAESRLLALQQFQEEPQPVLVATVAFGMGVDRPDVGLVLHLELPASPEGYLQESG 324
Query: 602 RAGRDGHLADC-VLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILV 660
RAGRDG A+ +LY++ R+ D R + CR + L+
Sbjct: 325 RAGRDGQPAEVLLLYSDSDRSRLAWAVRQGRDGAAAQLRRMESI----AEGPDCRQQALL 380
Query: 661 EYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNE 704
GE E C CD C + P +++ ++ A L++ + E
Sbjct: 381 LAVGE--MAEPCGCCDRC-EEPVLIQDGQQLAQPLLRALQQAEE 421
>gi|326431575|gb|EGD77145.1| RecQ5 [Salpingoeca sp. ATCC 50818]
Length = 1451
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 136/241 (56%), Gaps = 25/241 (10%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
D +++ K+ G + Q EA +A L DC +L TG GKSLC+Q+PAL V
Sbjct: 703 DHSIEMLKAFKRQLGLRKFRPNQLEACNAALTGRDCFILMPTGGGKSLCYQLPALTKKGV 762
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRG------MYSIIYVCPE 269
VISPLISL+ DQ S L ++ + A L S Q D K + + R + +IYV PE
Sbjct: 763 TFVISPLISLIQDQVSALRQNNIRALCLLSTQ-DQKTQSQIHRTLCMKDVLCKLIYVTPE 821
Query: 270 TVI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
+ RL + +Q L ++ F IDE HCVS+WGHDFRPDY+RLS LRE F
Sbjct: 822 RIAASHRLKQTMQNLYTRGLLSRFVIDEAHCVSQWGHDFRPDYKRLSCLREWFPT----- 876
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYK 386
+P+MALTATAT +V+ DIL +L M+ F SF RPNL + V+ ++SYK
Sbjct: 877 ----VPMMALTATATKRVKRDILMNLKMTNALVFE-QSFNRPNLFYEVR-----KKSSYK 926
Query: 387 K 387
K
Sbjct: 927 K 927
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 93/168 (55%), Gaps = 5/168 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RKE ++++ L G K+ Y+A + + ++ K+ ++ ATIAFGMG
Sbjct: 946 IVYCLSRKECETVSQALNQSGHKSLFYHAGMDPADREAYQDQWQSGKVNIMCATIAFGMG 1005
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS----MPTLLPSRRSE 631
IDK +VR + H+ P+S+E YYQEAGRAGRDG A CVLY N M + S
Sbjct: 1006 IDKPDVRFVFHFSLPKSMEGYYQEAGRAGRDGKPAVCVLYYNYGDKAKHMRLIDIGEGSY 1065
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ-LCDVC 678
+Q +Q L+ +Y N CR + YFGEDF C+ CDVC
Sbjct: 1066 EQKEQHRSNLNQVVQYCENFQDCRRVQQLAYFGEDFDKRDCRNNCDVC 1113
>gi|424790625|ref|ZP_18217151.1| DNA helicase [Xanthomonas translucens pv. graminis ART-Xtg29]
gi|422797927|gb|EKU26107.1| DNA helicase [Xanthomonas translucens pv. graminis ART-Xtg29]
Length = 602
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/226 (43%), Positives = 136/226 (60%), Gaps = 19/226 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+S+L + FG+ + Q++ + A D LVL TG GKSLC+QIP+LL +VISP
Sbjct: 6 HSVLGRVFGYDQFRGPQQDIVEHVAAGQDALVLMPTGGGKSLCYQIPSLLRDGTGIVISP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP- 277
LI+LM DQ L + GV A +L S + +VE++ L G ++YV PE RL+ P
Sbjct: 66 LIALMQDQVEALRQLGVRAEYLNSTLDAETAQRVERELLAGELDLLYVAPE---RLLTPR 122
Query: 278 -LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L L SR IALFAIDE HCVS+WGHDFRP+YR+L+VL E + IP +AL
Sbjct: 123 FLSLLERSR-IALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------QIPRIAL 172
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
TATA + +I + L +++ FV +SF RPN+R++V S R
Sbjct: 173 TATADPPTQREIAERLDLTQARHFV-SSFDRPNIRYTVVQKDNSKR 217
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A++L G+ A Y+A LP F V+ ATIAFGMG
Sbjct: 232 IVYCMSRRKVEETAEFLAKEGLNALPYHAGLPAEVRAGNQRRFLREDGIVMCATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL----PSRRSE 631
IDK +VR + H P+SLE YYQE GRAGRDG A+ L L + L E
Sbjct: 292 IDKPDVRFVAHTDLPKSLEGYYQETGRAGRDGEAAEAWLCYGLGDVVLLKQMIEKGEAGE 351
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
D+ + R L Y + CR ++L+ FGE + + C CD C+
Sbjct: 352 DRKRVERRKLDQLLGY-CESMQCRRQVLLAGFGETYP-QPCGNCDNCL 397
>gi|389775051|ref|ZP_10193137.1| ATP-dependent DNA helicase RecQ [Rhodanobacter spathiphylli B39]
gi|388437716|gb|EIL94498.1| ATP-dependent DNA helicase RecQ [Rhodanobacter spathiphylli B39]
Length = 608
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 133/224 (59%), Gaps = 19/224 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG+ S + Q+ + D LVL TG GKSLC+QIPALL +V+SPLI
Sbjct: 7 ILQSVFGYPSFRGQQQAVVEHLGEGGDALVLMPTGGGKSLCYQIPALLRQGTGIVVSPLI 66
Query: 224 SLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ L + GV A FL S G +VE++ L G +++YV PE ++ R + L
Sbjct: 67 ALMQDQVDALREAGVAAAFLNSSLAGDQQREVERQLLAGELNLLYVAPERLLTSRFLDLL 126
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+R +ALFAIDE HCVS+WGHDFRP+YR L++L + F ++P +ALTA
Sbjct: 127 ERTE----VALFAIDEAHCVSQWGHDFRPEYRELAILHQRFP---------EVPRIALTA 173
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
TA + RE+I++ L + +FV +SF RPN+ + V + R
Sbjct: 174 TADPRTREEIVERLSLQDARQFV-SSFDRPNIGYRVGQRHNAKR 216
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 5/172 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A +L G++A Y+A L + + F V+VAT+AFGMG
Sbjct: 231 IVYCLSRRKVDDTAAWLAESGIEALPYHAGLDAATRAKNQQRFLREDGVVMVATVAFGMG 290
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS---SMPTLLPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG A+ + LS +M ++ S D
Sbjct: 291 IDKPDVRFVAHLDLPRSIEGYYQETGRAGRDGLPAEAWMIYGLSDVVTMSQMIAQSESAD 350
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ K+ R + CR ++L+ FGE + C CD C+ PP+
Sbjct: 351 ERKRVERQKLESLLAYAEAIDCRRQLLLGAFGESYPG-PCGHCDNCI-APPK 400
>gi|344942347|ref|ZP_08781635.1| ATP-dependent DNA helicase RecQ [Methylobacter tundripaludum SV96]
gi|344263539|gb|EGW23810.1| ATP-dependent DNA helicase RecQ [Methylobacter tundripaludum SV96]
Length = 712
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/246 (41%), Positives = 144/246 (58%), Gaps = 28/246 (11%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK FG+ + Q++ + +A D LVL TG GKSLC+QIPAL+ V +VISPLI
Sbjct: 8 ILKTVFGYDKFRGQQQDVIEQLIAGQDALVLMPTGGGKSLCYQIPALIRPGVGIVISPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPE--TVIRLIKPL 278
+LM DQ S L + GV A FL S + ++EQ+ L G ++Y+ PE T R
Sbjct: 68 ALMQDQVSALLQLGVKAAFLNSTLSLEESRRIEQQLLNGELDLLYIAPERLTSARTGALF 127
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+R+ IALFAIDE HCVS+WGHDFR DY +LS+L E F DIP +ALTA
Sbjct: 128 ERIK----IALFAIDEAHCVSQWGHDFRVDYLQLSLLHERFP---------DIPRIALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTK 398
TA + RE+I L++ + + L+ F RPN+R+ + + + +D QLID + +
Sbjct: 175 TADDKTREEIKLRLNLEQA-QLYLSGFDRPNIRYRIVQKQNA------RD--QLID-FIR 224
Query: 399 KKKTGE 404
+ TG+
Sbjct: 225 AEHTGD 230
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+ + A++L GV A Y+A + + +F + V+VATIAFGMG
Sbjct: 233 IVYCLSRKKVDATAEWLRTKGVNALPYHAGMDAGLRAKHQHQFLMEEGLVIVATIAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSED 632
IDK NVR + H P+S+EAYYQE GR GRDG AD + L + TL L +++
Sbjct: 293 IDKPNVRFVAHLDLPKSVEAYYQETGRGGRDGLPADAWMAYGLQDVITLRKMLQDSNADE 352
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVD 680
K+ D CR + L+ YFG D + C CD C++
Sbjct: 353 AHKRIEYHKLDAMLALCEQVHCRRQALLGYFG-DLLEQPCGNCDTCLE 399
>gi|114619614|ref|XP_528104.2| PREDICTED: Werner syndrome ATP-dependent helicase [Pan troglodytes]
Length = 1432
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 126/212 (59%), Gaps = 12/212 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D + + ATG GKSLCFQ P + GK+ +VISPLI
Sbjct: 540 LKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLI 599
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q +N + L G Y I+YV PE + LQ+L
Sbjct: 600 SLMEDQVLQLKMSNIPACFLGSAQSENVLTDIKL-GKYRIVYVTPEYCSGNMGLLQQLEA 658
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GI L A+DE HC+S+WGHDFR +R+L L+ +P++ALTATA+
Sbjct: 659 DIGITLIAVDEAHCISEWGHDFRNSFRKLGSLKTALPM---------VPIVALTATASSS 709
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+REDI++ L++ + + T F RPNL V+
Sbjct: 710 IREDIVRCLNL-RNPQITCTGFDRPNLYLEVR 740
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 104/178 (58%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + + + +H F ++++ V+ATIA
Sbjct: 764 EGPTIIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFNTRKDIHHRFVRDEIQCVIATIA 823
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ A+++ LL
Sbjct: 824 FGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEI 883
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
R+E +M + +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 884 RNEKFRLYKLKMTAKMEKY-LHSSRCRRQIILSHF-EDKQVQKASLGIMGTEKCCDNC 939
>gi|126661004|ref|ZP_01732090.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. CCY0110]
gi|126617703|gb|EAZ88486.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. CCY0110]
Length = 710
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 156/289 (53%), Gaps = 28/289 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK FG+ ++ QK+ ++ L D L++ TG GKSLCFQ+PALL V VV+SPLI+
Sbjct: 12 LKYFFGYDQFRSGQKQIINEALNDKDLLIIMPTGGGKSLCFQLPALLKSGVCVVVSPLIA 71
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L +G+ A FL S ++ E L+G ++YV PE ++ + L
Sbjct: 72 LMQDQVDALLDNGIGATFLNSTLNREELQSRENAILKGKIKLVYVAPERLLNDNFLNFLD 131
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L + G++ FAIDE HCVS WGHDFRP+YR+L LR + +P+ ALTAT
Sbjct: 132 FLKQKVGLSAFAIDEAHCVSAWGHDFRPEYRQLKQLRFRYPK---------VPMFALTAT 182
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKK 399
AT +VR DI++ L + T V SF RPNL + V+ SR SY QL++ Y +
Sbjct: 183 ATKRVRADIIEQLGLQNPTVHV-ASFDRPNLYYEVQQ---KSRRSY----TQLLN-YIR- 232
Query: 400 KKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGN 448
+E S I L ++ + + + ++ + G YDDE N
Sbjct: 233 ----NQEGSGIIYCLSRKNVETIALRLQQDGIDALPYHAGMYDDERATN 277
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 134/263 (50%), Gaps = 13/263 (4%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
++G IIY +RK +IA L G+ A Y+A + + T F + + ++VATI
Sbjct: 234 QEGSGIIYCLSRKNVETIALRLQQDGIDALPYHAGMYDDERATNQTRFIRDDVRIIVATI 293
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPS 627
AFGMGI+K +VR ++HY P++LE+YYQE+GRAGRDG A+C L + +L + L+
Sbjct: 294 AFGMGINKPDVRFVVHYDLPRNLESYYQESGRAGRDGEPANCALFFSFGDLKRLEYLIDQ 353
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKN 687
+ E + + + L Y T C R+ I++ YFG+ + KC CD C P +++
Sbjct: 354 KIDEKEQRVGRQQLRQVVDYAEGTECRRS-IVLRYFGQQYKG-KCDNCDNC-KHPKPVED 410
Query: 688 LKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLAT 747
EA + +A E+ M + G KK+K + + I + A
Sbjct: 411 WTIEAQKFLSCVARCQERF-GMSHIIDVLRGSKKKKVEKYGHHLLSTYGIGKDKS---AA 466
Query: 748 DLLWWRGLARIMENKGYIREGDD 770
+ W+ L R + ++G++ E D
Sbjct: 467 E---WKMLGRSLIHQGFVNETTD 486
>gi|393775758|ref|ZP_10364067.1| ATP-dependent DNA helicase [Ralstonia sp. PBA]
gi|392717247|gb|EIZ04812.1| ATP-dependent DNA helicase [Ralstonia sp. PBA]
Length = 619
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 134/220 (60%), Gaps = 21/220 (9%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVV 218
+LLK+ FG+ + ++ Q++ + DCLVL TG GKSLC+Q+PALL + V +V
Sbjct: 6 ALLKEVFGYFAFRDRQRDIIEHVAGGGDCLVLMPTGGGKSLCYQLPALLRKRAGHGVGIV 65
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLI 275
+SPLI+LM DQ + LS+ GV A +L S ++E+ LRG ++YV PE RL+
Sbjct: 66 VSPLIALMQDQVAALSELGVNAAYLNSTLSSAEAAEIERALLRGELDLLYVAPE---RLL 122
Query: 276 KP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
P L E I LFAIDE HCVS+WGHDFRP+Y +LSVL E F D+P +
Sbjct: 123 TPRFLGLLERARIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHEQFP---------DVPRI 173
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA R++I+ L + FV +SF RPN+R+ +
Sbjct: 174 ALTATADAVTRDEIIHRLALDDAQVFV-SSFDRPNIRYRI 212
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 6/193 (3%)
Query: 510 LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVAT 569
+E ++Y +R++ A++L G+ A Y+A L + F + V+VAT
Sbjct: 239 IEHDAGVVYCLSRRKVEETAEWLASQGINALPYHAGLDAGVRQMNQQRFLREEGIVIVAT 298
Query: 570 IAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM---PTLLP 626
IAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + ++
Sbjct: 299 IAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPANAWMAYGLGDVVQQKRMID 358
Query: 627 SRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMK 686
++ K+ D T+ CR + L+ YFGE + C CD C++ PP
Sbjct: 359 DSDADAVHKRVSAAKLDALLGLCETAGCRRERLLSYFGE--ASHPCGNCDTCLE-PPATC 415
Query: 687 NLKEEANILMQVI 699
+ EA + + +
Sbjct: 416 DGTREAQMALSCV 428
>gi|427717685|ref|YP_007065679.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 7507]
gi|427350121|gb|AFY32845.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 7507]
Length = 720
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 132/220 (60%), Gaps = 16/220 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK HFG+ + Q++ + L + D +V+ TG GKSLCFQ+PALL + VV+SPLI+
Sbjct: 11 LKYHFGYDRFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALLKKGLTVVVSPLIA 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L + ++A FL S KV E+ L G ++YV PE ++ R + L
Sbjct: 71 LMQDQVESLRNNNISATFLNSSLNAYKVRSREEAILNGRVKLLYVAPERLLSERFLPFLD 130
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ GI+ FAIDE HCVS+WGHDFRP+YR+L LR+ + DIP +ALTAT
Sbjct: 131 LINHQIGISSFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYP---------DIPTVALTAT 181
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT 379
AT +VR DI++ L + K + SF R NL + ++ SKT
Sbjct: 182 ATDRVRADIIQQLGL-KQPSIHIASFNRQNLYYEIR-SKT 219
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 138/277 (49%), Gaps = 21/277 (7%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
AE L +++E +G I+Y TRK+ + L V A Y+A L + + T F
Sbjct: 224 AELLELIRE--TEGSAIVYCLTRKKVDELTFKLQNDKVAALPYHAGLSDEERSKNQTRFI 281
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
+ + V+VATIAFGMGI+K +VR +IH+ P++LE+YYQE+GRAGRDG + C ++ +
Sbjct: 282 RDDVRVMVATIAFGMGINKPDVRLVIHFDIPRNLESYYQESGRAGRDGEPSRCTVFFSFG 341
Query: 620 SMPTLLPS--RRSEDQ----TKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
+ T+ S ++++ Q KQ R + D Y T CR I + YFGE F C
Sbjct: 342 DIKTIEWSIDQKTDPQEQLIAKQQLRQMID---YAEGTD-CRRTIQLGYFGERFPG-NCG 396
Query: 674 LCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMF 733
CD C P +++ EA + +A E+ + D + G K QK + K+
Sbjct: 397 NCDNC-RYPKPVQDWTIEAMKFLSCVARCKERFGMLHIID-VLRGAKNQKITLNQHDKLS 454
Query: 734 VSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
I + D WR L R + ++G + + D
Sbjct: 455 TYGI---GKDKTVDD---WRMLGRSLLHQGLLEQTSD 485
>gi|329960081|ref|ZP_08298545.1| ATP-dependent DNA helicase RecQ [Bacteroides fluxus YIT 12057]
gi|328533033|gb|EGF59806.1| ATP-dependent DNA helicase RecQ [Bacteroides fluxus YIT 12057]
Length = 603
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 128/216 (59%), Gaps = 20/216 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + LA D LVL TG GKS+C+Q+PALL VV+SPLIS
Sbjct: 5 LKTYFGYDSFRPLQEEIIRHLLARKDALVLMPTGGGKSICYQLPALLCEGTAVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVIRLIKPLQ 279
LM DQ L +G+ A L S +++ ALR G ++Y+ PE +L+
Sbjct: 65 LMKDQVESLVANGIAAGALNSN--NDETANAALRRACTEGKLKLLYISPE---KLLAEAN 119
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L I+LFAIDE HC+S+WGHDFRP+Y ++ +L + F +P++ALTAT
Sbjct: 120 YLLRDMHISLFAIDEAHCISQWGHDFRPEYTQMGILHQQFP---------HVPIIALTAT 170
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A REDI+K LH+ + K ++SF RPNL +VK
Sbjct: 171 ADKITREDIIKQLHLEQ-PKIFISSFDRPNLSLAVK 205
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 106/178 (59%), Gaps = 5/178 (2%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566
+ P E G +IY +R +T S+A+ L G+KAA Y+A L + R +F ++++VV
Sbjct: 223 RHPGESG--VIYCMSRSKTESVAQMLQKQGIKAAVYHAGLSADKRDRAQDDFINDRVQVV 280
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLP 626
ATIAFGMGIDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L+ + L
Sbjct: 281 CATIAFGMGIDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSLADLILLTK 340
Query: 627 SRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
Q L +Y CR +IL+ YFGE+ +H+ C CDVC PPE
Sbjct: 341 FATESGQQSINIEKLQRMQQYA-EADICRRRILLSYFGENTTHD-CGNCDVC-KNPPE 395
>gi|427722202|ref|YP_007069479.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 7376]
gi|427353922|gb|AFY36645.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 7376]
Length = 715
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 129/219 (58%), Gaps = 15/219 (6%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ + LK FG+ S + QK + A L + D L L TG+GKS+CFQ+PALL + VVIS
Sbjct: 7 LEAALKHFFGYESFRPGQKTVIEAALQNRDVLALMPTGAGKSICFQLPALLKSGLTVVIS 66
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIR--LI 275
PLI+LM DQ L+ +G+ A FL S N+ Q L G ++YV PE +
Sbjct: 67 PLIALMQDQVDSLTDNGIGATFLNSTLNLNQARSRIQAILNGKIKLLYVAPERLFNEGFQ 126
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
+ L + +S G++ F +DE HCVS+WGHDFRP+YR+L+ LR N+ +P A
Sbjct: 127 EFLNDVTDSVGLSGFVVDEAHCVSEWGHDFRPEYRQLARLRRNYP---------QVPCHA 177
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TATAT +VR+DI+ L + + F TSF RPNL + V
Sbjct: 178 FTATATERVRQDIITQLALHTPS-FHCTSFNRPNLYYEV 215
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 126/259 (48%), Gaps = 15/259 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ I+ L G+ A Y+A + +F + + V+VATIAFGMG
Sbjct: 239 IIYCSSRKKVDEISDRLKNDGINALPYHAGMSDKARASHQDQFIRDDVPVIVATIAFGMG 298
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
I+K +VR ++HY P +LE YYQE+GRAGRD ADC L ++ + + E
Sbjct: 299 INKPDVRFVLHYDLPGNLERYYQESGRAGRDNEPADCALLYSVGDIKKAEYFIELKDDEQ 358
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ + AY+ L Y CR I + YFGE F C CD C P +++ EA
Sbjct: 359 EKRVAYQQLQKMIDYAEGIE-CRRTIQLSYFGESFVG-NCGTCDNC-KNPKPIEDWTIEA 415
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLW 751
+ +A E+ + D + G K++K + + ++ I R+ ++
Sbjct: 416 QKFLSCVARCRERYGMIYIID-VLKGSKREKVLQNRHNELSTYGIGRDHTKDE------- 467
Query: 752 WRGLARIMENKGYIREGDD 770
W+ L R + ++G++ E D
Sbjct: 468 WKNLGRSLLHQGFMAETSD 486
>gi|386826289|ref|ZP_10113396.1| ATP-dependent DNA helicase RecQ [Beggiatoa alba B18LD]
gi|386427173|gb|EIJ41001.1| ATP-dependent DNA helicase RecQ [Beggiatoa alba B18LD]
Length = 733
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 127/223 (56%), Gaps = 17/223 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L++ FG+ + Q+ + +A D LVL TG GKSLC+QIPALL V VVISPLI
Sbjct: 9 ILRRVFGYEHFRGHQETIIQHVMAGGDALVLMPTGGGKSLCYQIPALLRSGVGVVISPLI 68
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQ---PDNKVEQKALRGMYSIIYVCPETVIRLIKP-LQ 279
+LM DQ L + G+ A FL S Q ++ Q+ + ++YV PE RL P
Sbjct: 69 ALMQDQVDALLQLGIRAAFLNSSQDSAQTRQIVQQLRQNALDLLYVAPE---RLNNPRFL 125
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+S +ALFAIDE HCVS+WGHDFRPDY RLS+L E F IP +ALTAT
Sbjct: 126 EFLDSLPLALFAIDEAHCVSQWGHDFRPDYARLSILHERFP---------HIPRIALTAT 176
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
A R +I+ L + FV T F RPN+R+ + + +R
Sbjct: 177 ADKPTRREIISRLGLENAHVFV-TGFDRPNIRYRITQKRPPAR 218
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 98/169 (57%), Gaps = 6/169 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH-TEFHENKLEVVVATIAFGM 574
I+Y +RK+ +A++L G A Y+A L ++LR+ H F + V+VATIAFGM
Sbjct: 235 IVYCLSRKKVEEVAEFLTVNGWTALPYHAGL-SNELRQQHQNRFLREEGIVIVATIAFGM 293
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS---MPTLLPSRRSE 631
GIDK NVR + H P+SLEAYYQE GRAGRDG A+ L L + LL + ++
Sbjct: 294 GIDKPNVRFVAHLDLPKSLEAYYQETGRAGRDGLPANAWLAYGLEDVILLRKLLSNSEAD 353
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVD 680
+Q K+ + + T+ CR ++L+ YFG+D E C CD C++
Sbjct: 354 EQHKRLEQQKLEALLGYCETTQCRRQVLLAYFGDDLV-EPCGNCDSCLE 401
>gi|148227808|ref|NP_001081838.1| Werner syndrome ATP-dependent helicase homolog [Xenopus laevis]
gi|29428101|sp|O93530.1|WRN_XENLA RecName: Full=Werner syndrome ATP-dependent helicase homolog;
AltName: Full=Exonuclease WRN; AltName:
Full=Focus-forming activity 1; Short=FFA-1
gi|3420291|gb|AAC63512.1| focus forming activity 1 [Xenopus laevis]
Length = 1436
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 127/219 (57%), Gaps = 12/219 (5%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWL-AHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
S LK +FGHSS K Q + + + L D LV+ ATG GKSLC+Q + T + +VI P
Sbjct: 479 SCLKTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVICP 538
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LISLM DQ +L +++CFLGS Q N V Q G +IY+ PE R I LQ L
Sbjct: 539 LISLMEDQVLQLEMSNISSCFLGSAQSKN-VLQDVKDGKMRVIYMTPEFCSRGISLLQDL 597
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
GI L AIDE HC+S+WGHDFR YR L +LK + ++P++ALTATA+
Sbjct: 598 DNRYGITLIAIDEAHCISEWGHDFRSAYRSL---------GSLKRMLPNVPIVALTATAS 648
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380
+REDI KSL++ + TSF RPNL V T+
Sbjct: 649 PSIREDITKSLNL-HNPQVTCTSFDRPNLYLDVARKTTN 686
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 141/277 (50%), Gaps = 31/277 (11%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TI+Y PTRK + + L G+ Y+A + Q R VH F +++ VVAT+A
Sbjct: 707 EGATIVYCPTRKTSEQVTAELIKLGIACGTYHAGMGIKQRREVHHRFMRDEIHCVVATVA 766
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C L+ A+++ +L
Sbjct: 767 FGMGINKPDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSCCHALWAQADMNFNRHMLGEI 826
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGED---------FSHEKC------- 672
++ + +ML+ +Y +N+S CR KI++ +F + EKC
Sbjct: 827 PNKGFREYKLKMLTKMEKY-LNSSTCRRKIILSHFEDKQLRKASSGIMGTEKCCDNCKTR 885
Query: 673 QLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGI--YSGIKKQKFMDRPNL 730
+C++ ++ + NL++ + I+A + + G Q+ DR
Sbjct: 886 LICNISINDTED--NLQDFGPQAYKFISAVDVLGQKFGTGVPVLFLRGSTSQRVPDRFRN 943
Query: 731 KMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIRE 767
S ++Q++ + W+ LAR + +GY++E
Sbjct: 944 HSLFSSGKDQTEAF-------WKVLARQLITEGYLQE 973
>gi|433678735|ref|ZP_20510560.1| DNA helicase [Xanthomonas translucens pv. translucens DSM 18974]
gi|430816172|emb|CCP41071.1| DNA helicase [Xanthomonas translucens pv. translucens DSM 18974]
Length = 602
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/226 (43%), Positives = 136/226 (60%), Gaps = 19/226 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+S+L + FG+ + Q++ + A D LVL TG GKSLC+QIP+LL +VISP
Sbjct: 6 HSVLNRVFGYDQFRGPQQDIVEHVAAGQDALVLMPTGGGKSLCYQIPSLLRDGTGLVISP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP- 277
LI+LM DQ L + GV A +L S + +VE++ L G ++YV PE RL+ P
Sbjct: 66 LIALMQDQVEALRQLGVRAEYLNSTLDAETAQRVERELLAGELDLLYVAPE---RLLTPR 122
Query: 278 -LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L L SR IALFAIDE HCVS+WGHDFRP+YR+L+VL E + IP +AL
Sbjct: 123 FLSLLERSR-IALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------QIPRIAL 172
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
TATA + +I + L +++ FV +SF RPN+R++V S R
Sbjct: 173 TATADPPTQREIAERLDLTQARHFV-SSFDRPNIRYTVVQKDNSKR 217
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A++L G+ A Y+A LP F V+ ATIAFGMG
Sbjct: 232 IVYCMSRRKVEETAEFLAKEGLNALPYHAGLPAEVRADNQRRFLREDGIVMCATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL----PSRRSE 631
IDK +VR + H P+SLE YYQE GRAGRDG A+ L L + L E
Sbjct: 292 IDKPDVRFVAHTDLPKSLEGYYQETGRAGRDGEAAEAWLCYGLGDVVLLKQMIEKGEAGE 351
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
D+ + R L Y + CR ++L+ FGE + + C CD C+
Sbjct: 352 DRKRVERRKLDQLLGY-CESMQCRRQVLLAGFGETYP-QPCGNCDNCL 397
>gi|1280208|gb|AAC41981.1| unnamed protein product [Homo sapiens]
gi|3719421|gb|AAC63361.1| WRN [Homo sapiens]
gi|6272686|gb|AAF06162.1| WRN [Homo sapiens]
gi|60461921|gb|AAX21098.1| Werner syndrome helicase [Homo sapiens]
Length = 1432
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 126/212 (59%), Gaps = 12/212 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D + + ATG GKSLCFQ P + GK+ +VISPLI
Sbjct: 540 LKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLI 599
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q +N + L G Y I+YV PE + LQ+L
Sbjct: 600 SLMEDQVLQLKMSNIPACFLGSAQSENVLTDIKL-GKYRIVYVTPEYCSGNMGLLQQLEA 658
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GI L A+DE HC+S+WGHDFR +R+L L+ +P++ALTATA+
Sbjct: 659 DIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPM---------VPIVALTATASSS 709
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+REDI++ L++ + + T F RPNL V+
Sbjct: 710 IREDIVRCLNL-RNPQITCTGFDRPNLYLEVR 740
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S + +H F ++++ V+ATIA
Sbjct: 764 EGPTIIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIA 823
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ A+++ LL
Sbjct: 824 FGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEI 883
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
R+E +M++ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 884 RNEKFRLYKLKMMAKMEKY-LHSSRCRRQIILSHF-EDKQVQKASLGIMGTEKCCDNC 939
>gi|49118127|gb|AAH73087.1| FFA-1 protein [Xenopus laevis]
Length = 1434
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 127/219 (57%), Gaps = 12/219 (5%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWL-AHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
S LK +FGHSS K Q + + + L D LV+ ATG GKSLC+Q + T + +VI P
Sbjct: 479 SCLKTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVICP 538
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LISLM DQ +L +++CFLGS Q N V Q G +IY+ PE R I LQ L
Sbjct: 539 LISLMEDQVLQLEMSNISSCFLGSAQSKN-VLQDVKDGKMRVIYMTPEFCSRGISLLQDL 597
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
GI L AIDE HC+S+WGHDFR YR L +LK + ++P++ALTATA+
Sbjct: 598 DNRYGITLIAIDEAHCISEWGHDFRSAYRSL---------GSLKRMLPNVPIVALTATAS 648
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380
+REDI KSL++ + TSF RPNL V T+
Sbjct: 649 PSIREDITKSLNL-HNPQVTCTSFDRPNLYLDVARKTTN 686
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 142/277 (51%), Gaps = 31/277 (11%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TI+Y PTRK + + L G+ Y+A + Q R VH F ++++ VVAT+A
Sbjct: 707 EGATIVYCPTRKTSEQVTAELIKLGIACGTYHAGMGIKQRREVHHRFMRDEIQCVVATVA 766
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C L+ A+++ +L
Sbjct: 767 FGMGINKPDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSCCHALWTQADMNFNRHMLGEI 826
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGED---------FSHEKC------- 672
++ + +ML+ +Y +N+S CR KI++ +F + EKC
Sbjct: 827 PNKGFREYKLKMLTKMEKY-LNSSTCRRKIILSHFEDKQLRKASSGIMGTEKCCDNCKTR 885
Query: 673 QLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGI--YSGIKKQKFMDRPNL 730
+C++ ++ + NL++ + I+A + + G Q+ DR
Sbjct: 886 LICNISINDTED--NLQDFGPQAYKFISAVDVLGQKFGTGVPVLFLRGSTSQRVPDRFRN 943
Query: 731 KMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIRE 767
S ++Q++ + W+ LAR + +GY++E
Sbjct: 944 HSLFSSGKDQTEAF-------WKVLARQLITEGYLQE 973
>gi|306921707|dbj|BAJ17933.1| Werner syndrome, RecQ helicase-like [synthetic construct]
Length = 1432
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 126/212 (59%), Gaps = 12/212 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D + + ATG GKSLCFQ P + GK+ +VISPLI
Sbjct: 540 LKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLI 599
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q +N + L G Y I+YV PE + LQ+L
Sbjct: 600 SLMEDQVLQLKMSNIPACFLGSAQSENVLTDIKL-GKYRIVYVTPEYCSGNMGLLQQLEA 658
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GI L A+DE HC+S+WGHDFR +R+L L+ +P++ALTATA+
Sbjct: 659 DIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPM---------VPIVALTATASSS 709
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+REDI++ L++ + + T F RPNL V+
Sbjct: 710 IREDIVRCLNL-RNPQITCTGFDRPNLYLEVR 740
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S + +H F ++++ V+ATIA
Sbjct: 764 EGPTIIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIA 823
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ A+++ LL
Sbjct: 824 FGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEI 883
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
R+E +M++ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 884 RNEKFRLYKLKMMAKMEKY-LHSSRCRRQIILSHF-EDKQVQKASLGIMGTEKCCDNC 939
>gi|110735439|ref|NP_000544.2| Werner syndrome ATP-dependent helicase [Homo sapiens]
gi|322510082|sp|Q14191.2|WRN_HUMAN RecName: Full=Werner syndrome ATP-dependent helicase; AltName:
Full=DNA helicase, RecQ-like type 3; Short=RecQ3;
AltName: Full=Exonuclease WRN; AltName: Full=RecQ
protein-like 2
gi|37953299|gb|AAR05448.1| Werner syndrome [Homo sapiens]
Length = 1432
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 126/212 (59%), Gaps = 12/212 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D + + ATG GKSLCFQ P + GK+ +VISPLI
Sbjct: 540 LKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLI 599
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q +N + L G Y I+YV PE + LQ+L
Sbjct: 600 SLMEDQVLQLKMSNIPACFLGSAQSENVLTDIKL-GKYRIVYVTPEYCSGNMGLLQQLEA 658
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GI L A+DE HC+S+WGHDFR +R+L L+ +P++ALTATA+
Sbjct: 659 DIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPM---------VPIVALTATASSS 709
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+REDI++ L++ + + T F RPNL V+
Sbjct: 710 IREDIVRCLNL-RNPQITCTGFDRPNLYLEVR 740
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S + +H F ++++ V+ATIA
Sbjct: 764 EGPTIIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIA 823
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ A+++ LL
Sbjct: 824 FGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEI 883
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
R+E +M++ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 884 RNEKFRLYKLKMMAKMEKY-LHSSRCRRQIILSHF-EDKQVQKASLGIMGTEKCCDNC 939
>gi|119583829|gb|EAW63425.1| Werner syndrome, isoform CRA_b [Homo sapiens]
Length = 1436
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 126/212 (59%), Gaps = 12/212 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D + + ATG GKSLCFQ P + GK+ +VISPLI
Sbjct: 544 LKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLI 603
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q +N + L G Y I+YV PE + LQ+L
Sbjct: 604 SLMEDQVLQLKMSNIPACFLGSAQSENVLTDIKL-GKYRIVYVTPEYCSGNMGLLQQLEA 662
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GI L A+DE HC+S+WGHDFR +R+L L+ +P++ALTATA+
Sbjct: 663 DIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPM---------VPIVALTATASSS 713
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+REDI++ L++ + + T F RPNL V+
Sbjct: 714 IREDIVRCLNL-RNPQITCTGFDRPNLYLEVR 744
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S + +H F ++++ V+ATIA
Sbjct: 768 EGPTIIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIA 827
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ A+++ LL
Sbjct: 828 FGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEI 887
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
R+E +M++ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 888 RNEKFRLYKLKMMAKMEKY-LHSSRCRRQIILSHF-EDKQVQKASLGIMGTEKCCDNC 943
>gi|119583828|gb|EAW63424.1| Werner syndrome, isoform CRA_a [Homo sapiens]
Length = 1405
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 126/212 (59%), Gaps = 12/212 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D + + ATG GKSLCFQ P + GK+ +VISPLI
Sbjct: 513 LKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLI 572
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q +N + L G Y I+YV PE + LQ+L
Sbjct: 573 SLMEDQVLQLKMSNIPACFLGSAQSENVLTDIKL-GKYRIVYVTPEYCSGNMGLLQQLEA 631
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GI L A+DE HC+S+WGHDFR +R+L L+ +P++ALTATA+
Sbjct: 632 DIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPM---------VPIVALTATASSS 682
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+REDI++ L++ + + T F RPNL V+
Sbjct: 683 IREDIVRCLNL-RNPQITCTGFDRPNLYLEVR 713
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S + +H F ++++ V+ATIA
Sbjct: 737 EGPTIIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIA 796
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ A+++ LL
Sbjct: 797 FGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEI 856
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
R+E +M++ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 857 RNEKFRLYKLKMMAKMEKY-LHSSRCRRQIILSHF-EDKQVQKASLGIMGTEKCCDNC 912
>gi|218130244|ref|ZP_03459048.1| hypothetical protein BACEGG_01832 [Bacteroides eggerthii DSM 20697]
gi|217987528|gb|EEC53856.1| ATP-dependent DNA helicase RecQ [Bacteroides eggerthii DSM 20697]
Length = 604
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 130/216 (60%), Gaps = 20/216 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + L +D LVL TG GKS+C+Q+PALL VV+SPLIS
Sbjct: 5 LKTYFGYDSFRPLQEEIIRHILGGNDALVLMPTGGGKSICYQLPALLREGTAVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVIRLIKPLQ 279
LM DQ L +G++A L S +++ E ALR G ++Y+ PE +L+
Sbjct: 65 LMKDQVEALCANGISAGALNSS--NDETENAALRRACMEGKLKLLYISPE---KLLAEAN 119
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L ++LFAIDE HC+S+WGHDFRP+Y ++ +L + F +P++ALTAT
Sbjct: 120 YLLRDMHVSLFAIDEAHCISQWGHDFRPEYAQMGILHQQFP---------QVPVIALTAT 170
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A REDI+K LH++ F+ +SF RPNL +VK
Sbjct: 171 ADKITREDIIKQLHLNHPRIFI-SSFDRPNLSLTVK 205
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 114/180 (63%), Gaps = 9/180 (5%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566
+ P E G IIY +R +T S+A+ L G++AA Y+A L ++ +F ++++VV
Sbjct: 223 RHPGESG--IIYCMSRSKTESVAQMLQKQGIRAAVYHAGLSPTRRDEAQDDFINDRVQVV 280
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLP 626
ATIAFGMGIDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +LS + +L
Sbjct: 281 CATIAFGMGIDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTLLFYSLSDL--ILL 338
Query: 627 SRRSEDQTKQAYRM--LSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
++ + D +Q+ + L +Y + CR +IL+ YFGE +H+ C CDVC PPE
Sbjct: 339 TKFATDSGQQSINIEKLQRMQQYA-ESDICRRRILLSYFGETATHD-CGNCDVC-KNPPE 395
>gi|90417085|ref|ZP_01225013.1| ATP-dependent DNA helicase RecQ [gamma proteobacterium HTCC2207]
gi|90331101|gb|EAS46357.1| ATP-dependent DNA helicase RecQ [marine gamma proteobacterium
HTCC2207]
Length = 607
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 136/224 (60%), Gaps = 19/224 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L +G++S + Q + + ++ LVL TG GKSLC+QIP+LL V ++ISPLI
Sbjct: 8 ILNSLYGYNSFRGHQADIIEHVSQGNNALVLMPTGGGKSLCYQIPSLLRDGVGIIISPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKP--L 278
+LM DQ + + GV A FL S N++EQ+ + G ++Y+ PE RLI+P L
Sbjct: 68 ALMQDQVGAMQQLGVKAAFLNSSLSHSDQNEIEQQLMAGQLDLLYIAPE---RLIQPYVL 124
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L+ R +ALFAIDE HCVS+WGHDFR DY LS+L E F A IP +ALTA
Sbjct: 125 DMLSRCR-LALFAIDEAHCVSQWGHDFRSDYLALSLLAERFSA---------IPRIALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
TA I+ R +I++ L + G K ++ F RPN+R+++ + T +
Sbjct: 175 TADIRTRNEIIERLSLG-GAKAYISGFDRPNIRYAIANKTTPKK 217
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 140/286 (48%), Gaps = 16/286 (5%)
Query: 487 DRSFERTDLLNK--PAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544
DR R + NK P ++L + + I+Y +RK+ A++L G KA Y+A
Sbjct: 201 DRPNIRYAIANKTTPKKQLLAFLQQRKSEAGIVYCLSRKKVEDTAEWLSQQGYKALPYHA 260
Query: 545 SLPKSQLRRVH-TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRA 603
LP SQLR+ H F ++VATIAFGMGIDK +VR + H P+S+EAYYQE GRA
Sbjct: 261 GLP-SQLRQTHQNRFLREDGVIIVATIAFGMGIDKPDVRFVAHLDLPKSIEAYYQETGRA 319
Query: 604 GRDGHLADCVLYANLSSMPTLLPSRRSED---QTKQAYRMLSDCFRYGMNTSCCRAKILV 660
GRDG AD + L + L + D Q K+A R D + CR K+L+
Sbjct: 320 GRDGQPADAWMVYGLQDVVRLQQMAQGSDGSEQFKRAERHKLDAMLGLCEVTSCRRKVLL 379
Query: 661 EYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIK 720
YF +D + +C CD C PPE + E A ++ + ++ + D + G +
Sbjct: 380 SYFADD-APNQCGNCDNC-QFPPETWDATEAAQKVLSCVYRTGQRFGLVHVMD-VLQGRE 436
Query: 721 KQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIR 766
+K + + ++ I + + WR + R + +G++R
Sbjct: 437 NEKVLQHGHQQLSTFGIGRDTHE------AQWRSVIRQLVVRGFLR 476
>gi|302878781|ref|YP_003847345.1| ATP-dependent DNA helicase RecQ [Gallionella capsiferriformans
ES-2]
gi|302581570|gb|ADL55581.1| ATP-dependent DNA helicase RecQ [Gallionella capsiferriformans
ES-2]
Length = 610
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 133/221 (60%), Gaps = 15/221 (6%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
+ +L FG+++ + Q+ + D LVL TG GKSLC+QIP+LL +V
Sbjct: 3 IPAQKILLDVFGYTTFRGEQQAIVEHIATGGDALVLMPTGGGKSLCYQIPSLLRAGTGIV 62
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVI--R 273
ISPLI+LM DQ L + GV A +L S + +V+ + +RG ++YV PE ++
Sbjct: 63 ISPLIALMQDQVEALQQLGVRAAYLNSSLSTDTAREVQGQLMRGELDLLYVAPERLMNAN 122
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
+ L+++ G+ALFAIDE HCVS+WGHDFRP+YR L++LR+ F A +P
Sbjct: 123 FLGLLEQVQTRHGLALFAIDEAHCVSQWGHDFRPEYRELTILRDRFPA---------VPR 173
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+ALTATA R +I++ L + + +FV +SF RPN+R+ +
Sbjct: 174 IALTATADAPTRREIVERLSLEQAREFV-SSFDRPNIRYKI 213
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 113/229 (49%), Gaps = 18/229 (7%)
Query: 484 RDTDRSFERTDLLNKPAERLSMLQE---------PLEDGLTIIYVPTRKETLSIAKYLCG 534
R+ SF+R ++ K + S++ + P E G I+Y +R+ A L
Sbjct: 198 REFVSSFDRPNIRYKITNKDSVINQLQYFINKEHPDEAG--IVYCLSRRRVDETAAKLKA 255
Query: 535 FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLE 594
G A Y+A L + + F + ++VAT+AFGMGIDK NVR + H P+S+E
Sbjct: 256 LGWDALPYHAGLDAATRAANQSRFLREEGVIMVATVAFGMGIDKPNVRFVAHIDLPKSME 315
Query: 595 AYYQEAGRAGRDGHLADCVLYANLS---SMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNT 651
YYQE GRAGRDG AD + L SM +L S + ++ K+ D +
Sbjct: 316 GYYQETGRAGRDGLPADAWMAYGLGDVVSMRQMLLSGDAPEERKRVELQKLDALLGFCES 375
Query: 652 SCCRAKILVEYFGEDFSHE-KCQLCDVCVDGPPEMKNLKEEANILMQVI 699
+ CR + L+ YFGE SH CQ CD C++ P ++ EA + + +
Sbjct: 376 TACRHQTLLRYFGE--SHPGNCQECDNCLN-PVQVWEATREAQMALSCV 421
>gi|119583830|gb|EAW63426.1| Werner syndrome, isoform CRA_c [Homo sapiens]
Length = 1406
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 126/212 (59%), Gaps = 12/212 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D + + ATG GKSLCFQ P + GK+ +VISPLI
Sbjct: 514 LKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLI 573
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q +N + L G Y I+YV PE + LQ+L
Sbjct: 574 SLMEDQVLQLKMSNIPACFLGSAQSENVLTDIKL-GKYRIVYVTPEYCSGNMGLLQQLEA 632
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GI L A+DE HC+S+WGHDFR +R+L L+ +P++ALTATA+
Sbjct: 633 DIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPM---------VPIVALTATASSS 683
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+REDI++ L++ + + T F RPNL V+
Sbjct: 684 IREDIVRCLNL-RNPQITCTGFDRPNLYLEVR 714
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S + +H F ++++ V+ATIA
Sbjct: 738 EGPTIIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIA 797
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ A+++ LL
Sbjct: 798 FGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEI 857
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
R+E +M++ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 858 RNEKFRLYKLKMMAKMEKY-LHSSRCRRQIILSHF-EDKQVQKASLGIMGTEKCCDNC 913
>gi|254523679|ref|ZP_05135734.1| ATP-dependent DNA helicase RecQ [Stenotrophomonas sp. SKA14]
gi|219721270|gb|EED39795.1| ATP-dependent DNA helicase RecQ [Stenotrophomonas sp. SKA14]
Length = 601
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 134/219 (61%), Gaps = 19/219 (8%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ LL++ FG+ + Q++ + A HD LVL TG GKSLC+Q+PALL +VIS
Sbjct: 6 AHDLLQRVFGYDDFRGPQQDIVEHVAAGHDALVLMPTGGGKSLCYQVPALLRDGCGIVIS 65
Query: 221 PLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVI--RLI 275
PLI+LM DQ L + GV A +L S + +VE++ L G ++YV PE ++ R +
Sbjct: 66 PLIALMQDQVEALRQLGVRAEYLNSTLDAETAGRVERELLAGELDMLYVAPERLLTGRFL 125
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L R IALFAIDE HCVS+WGHDFRP+YR+L+VL E + DIP +A
Sbjct: 126 SLLSR----SHIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------DIPRIA 172
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + +I + L +++ FV +SF RPN+R++V
Sbjct: 173 LTATADPPTQREIAERLDLAEARHFV-SSFDRPNIRYTV 210
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 88/170 (51%), Gaps = 4/170 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A++LCG G A Y+A LP F V+ ATIAFGMG
Sbjct: 233 IVYCMSRRKVEETAEFLCGQGFNALPYHAGLPPEVRANNQRRFLREDGIVMCATIAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 293 IDKPDVRFVAHTDLPKSMEGYYQETGRAGRDGEAAEAWLCYGLGDVVLLKQMIEQSEASE 352
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
+ KQ R D + CR ++L+ FGE + + C CD C+ P
Sbjct: 353 ERKQLERSKLDHLLGYCESMQCRRQVLLAGFGETYP-QPCGNCDNCLTPP 401
>gi|385650929|ref|ZP_10045482.1| ATP-dependent DNA helicase RecQ [Leucobacter chromiiresistens JG
31]
Length = 686
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/246 (40%), Positives = 145/246 (58%), Gaps = 28/246 (11%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L + FG+ + + Q+E + + D +VL TG GKS+C+QIP+L+ VV+SPL+
Sbjct: 78 VLAEVFGYDAFRGEQEEIIRQVIGGGDAVVLMPTGGGKSICYQIPSLVREGTGVVLSPLV 137
Query: 224 SLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKP--L 278
+LMHDQ + L GV A L S + VEQ G ++Y+ PE RL P +
Sbjct: 138 ALMHDQVAALQLVGVRAAALNSAMSIEDRRAVEQAYRDGQLDVLYLAPE---RLSAPGTV 194
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+ LA+ R IALFAIDE HCVS+WGHDFRPDY RL L E + D+P +ALTA
Sbjct: 195 ELLAQGR-IALFAIDEAHCVSQWGHDFRPDYLRLGALAERWP---------DVPRIALTA 244
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTK 398
TAT + +I + LH+ + FV +SF RPN+R+ ++ SK ++RA QL+ +
Sbjct: 245 TATPETHREITERLHLQRARHFV-SSFDRPNIRYRIE-SKQNARA-------QLVS-FVS 294
Query: 399 KKKTGE 404
++ +GE
Sbjct: 295 REHSGE 300
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 96/192 (50%), Gaps = 15/192 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK A L GV A AY+A LP T F + VVVATIAFGMG
Sbjct: 303 IVYALSRKRVEQTAAALRDAGVDAVAYHAGLPAHVRLDAQTRFLREEGVVVVATIAFGMG 362
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSED--- 632
IDK +VR + H P+S+E YYQE GRAGRDG ++ L L + S D
Sbjct: 363 IDKPDVRFVAHIDLPKSVEGYYQETGRAGRDGLPSEAWLAYGLQDVVQQRQMIESGDGDQ 422
Query: 633 -----QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKN 687
QT+ ML+ C CR L+ YFGED + E C CDVC+ PP++ +
Sbjct: 423 ATRASQTRHLNAMLALC-----EGVQCRRVFLLRYFGEDRA-EPCGNCDVCLT-PPQLWD 475
Query: 688 LKEEANILMQVI 699
+ +L+ I
Sbjct: 476 ATVPSQMLLSTI 487
>gi|313236291|emb|CBY11611.1| unnamed protein product [Oikopleura dioica]
Length = 730
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/273 (37%), Positives = 148/273 (54%), Gaps = 15/273 (5%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
L+++FGHS ++ Q +S+ + D LV+ ATG GKSLCFQ P L V+ +SPL
Sbjct: 225 FLRENFGHSQFRDNQWRVISSIIYKRTDQLVIMATGHGKSLCFQYPTLWMNAHVICVSPL 284
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGM-YSIIYVCPETVIRLIKPLQRL 281
ISLM DQ +L+ G+ ACFLGS Q ++ + Y IYVCPE + + I L+R+
Sbjct: 285 ISLMQDQVDQLNAKGIPACFLGSAQNQKRIVLANIYNRKYKAIYVCPEWIEKNILQLRRI 344
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+AL AIDE HCVS+WGHDFR Y G ++LK L + P++ALT TAT
Sbjct: 345 MSKIPVALIAIDEAHCVSEWGHDFRKAY---------MGLSSLKQLSPNTPVVALTGTAT 395
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFC---QLIDIYTK 398
+ +R++I+K L +S V SF RPN+ VK T D + I IY +
Sbjct: 396 VNMRDEIIKCLDLSNAQTTV-GSFDRPNIFIKVKKKTTMFDDLINSDAILPYKSIIIYCR 454
Query: 399 KKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESR 431
K+ E + + + ++ T + +S + R
Sbjct: 455 TKQLSEDVATKLAELKNETKSTFYHAGLSTDDR 487
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 112/209 (53%), Gaps = 25/209 (11%)
Query: 489 SFERTDLLNKPAERLSMLQEPLE-DGL-----TIIYVPTRKETLSIAKYLCGFG--VKAA 540
SF+R ++ K ++ +M + + D + IIY T++ + +A L K+
Sbjct: 417 SFDRPNIFIKVKKKTTMFDDLINSDAILPYKSIIIYCRTKQLSEDVATKLAELKNETKST 476
Query: 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A L + EF + +V+VATIAFGMGIDK +VRR+IHYG P SLEAYYQE
Sbjct: 477 FYHAGLSTDDRESIQNEFLRGQTKVIVATIAFGMGIDKADVRRVIHYGIPSSLEAYYQEI 536
Query: 601 GRAGRDGHLADCVLYANLSS--------MPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTS 652
GRAGRDG +DC+++ N T P R+ +Q + ++ + + F +T+
Sbjct: 537 GRAGRDGKSSDCIVFFNEQDKFIAEHFIKKTSNPKRK--EQLIKGFQDVMNLF----STT 590
Query: 653 CCRAKILVEYFGEDFSHEKCQL---CDVC 678
CR + +++YFGE + CD+C
Sbjct: 591 TCRREFILDYFGEKIDRSRTDFHVCCDIC 619
>gi|149057893|gb|EDM09136.1| rCG43045, isoform CRA_b [Rattus norvegicus]
Length = 1335
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 125/212 (58%), Gaps = 12/212 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGH S K Q + + + L D +V+ ATG GKSLCFQ P + TGK+ +VISPLI
Sbjct: 504 LKTYFGHCSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLI 563
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + AC LGS QP N + L G Y IIY+ PE + LQ+L
Sbjct: 564 SLMEDQVLQLEMSNIPACLLGSAQPKNILGDIKL-GRYRIIYITPEFCSGNLDLLQQLDS 622
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ GI L A+DE HC+S+WGHDFR +R L L+ +P++AL+ATA+
Sbjct: 623 NIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKTALPL---------VPVIALSATASSS 673
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+REDI++ L++ K T F RPNL V+
Sbjct: 674 IREDIIRCLNL-KDPHITCTGFDRPNLYLEVE 704
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 88/140 (62%), Gaps = 9/140 (6%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L V AY+A + S+ + +H F ++++ VVATIA
Sbjct: 729 EGPTIIYCPSRKVTEQVTVELGKLNVACQAYHAGMKISERKDIHHRFLRDEIQCVVATIA 788
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYA----NLSSMPTLLP 626
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C +L+A N + +
Sbjct: 789 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTTRLNHCSS 848
Query: 627 SRRSEDQTK----QAYRMLS 642
+ SED + QA+++LS
Sbjct: 849 ANNSEDTAQDFGPQAFQLLS 868
>gi|359474777|ref|XP_002267000.2| PREDICTED: ATP-dependent DNA helicase Q-like 2-like [Vitis
vinifera]
Length = 711
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/236 (38%), Positives = 140/236 (59%), Gaps = 18/236 (7%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
DW+ + + + FG S+ + Q+E ++A ++ D LV+ A G GKSLC+Q+PA+L V
Sbjct: 72 DWDAQADDVRFNIFGISTYRANQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAILRDGV 131
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR---GMYSIIYVCPET 270
+V+SPL+SL+ DQ L+ G+ A L S + D K KAL G I+YV PE
Sbjct: 132 ALVVSPLLSLIQDQVMGLAALGIPAYMLTSTTSKEDEKFIYKALEKGDGDLKILYVTPEK 191
Query: 271 VI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
+ R + L++ S ++L +IDE HC S+WGHDFRPDY+ L +L+ F
Sbjct: 192 ISKSKRFVSKLEKCHHSGCLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFP------- 244
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
D+P++ALTATAT +V+ D+++ LH+ K KFV ++ RPNL + V+ + R
Sbjct: 245 --DVPVVALTATATKKVQNDLMEMLHIPKCIKFV-STVNRPNLFYMVREKSSVGRV 297
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 6/164 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RKE +AK L G+ A Y+A + + RVH + +KL+V+V T+AFGMG
Sbjct: 317 IVYCFSRKECEQVAKELRERGISADYYHADMDVNARERVHLRWSNSKLQVIVGTVAFGMG 376
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K +VR +IH+ +S+E YYQE+GRAGRDG ++C+LY +P E+
Sbjct: 377 INKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGL 436
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ-LCDVC 678
Q L D +Y + CR +F E + C +CD C
Sbjct: 437 QN---LYDIVQYCQSKRECRRNAFFRHFAEPL--QDCNGMCDNC 475
>gi|217969471|ref|YP_002354705.1| ATP-dependent DNA helicase RecQ [Thauera sp. MZ1T]
gi|217506798|gb|ACK53809.1| ATP-dependent DNA helicase RecQ [Thauera sp. MZ1T]
Length = 657
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 132/218 (60%), Gaps = 15/218 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ +L+ FG+ + + Q E + D LVL TG GKSLC+QIPALL +V+SP
Sbjct: 59 HRVLEHVFGYPAFRGEQGEIVEHVAGGGDALVLMPTGGGKSLCYQIPALLRHGTAIVVSP 118
Query: 222 LISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVI--RLIK 276
LI+LM DQ S L + GV A FL S + VE+ G ++YV PE ++ R +
Sbjct: 119 LIALMQDQVSALVEAGVRAAFLNSSLDMERARAVERALWDGELELLYVAPERLMTPRFLD 178
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L L ++ ++LFAIDE HCVS+WGHDFRP+Y +LS+L E + A IP +AL
Sbjct: 179 QLDHLRDTGRLSLFAIDEAHCVSQWGHDFRPEYLQLSILPERYPA---------IPRIAL 229
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TATA Q RE+I + L++ +FV +SF RPN+R+++
Sbjct: 230 TATADRQTREEIAERLNLQAARRFV-SSFDRPNIRYTI 266
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 6/194 (3%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L ++E I+Y +R++ A +L G+ A Y+A + + + F
Sbjct: 277 LDFIREECPGQAGIVYCLSRRKVEETAAWLQEQGLAALPYHAGMTQEIRAEHQSRFLRED 336
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLS 619
++VATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A + ++
Sbjct: 337 GLIMVATIAFGMGIDKPDVRFVAHLDLPRSIEGYYQETGRAGRDGLPAQAWMAWGAQDVV 396
Query: 620 SMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
++ + ++ K+ R D + + CR + L+ YFGE + C CD C+
Sbjct: 397 QQRRMIDESEANEEFKRLARNRLDVLVGLVEATDCRRQHLLAYFGEQST--PCGNCDNCL 454
Query: 680 DGPPEMKNLKEEAN 693
PP+ + E A
Sbjct: 455 H-PPQTWDATEAAR 467
>gi|88603641|ref|YP_503819.1| ATP-dependent DNA helicase RecQ [Methanospirillum hungatei JF-1]
gi|88189103|gb|ABD42100.1| ATP-dependent DNA helicase RecQ [Methanospirillum hungatei JF-1]
Length = 606
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 133/216 (61%), Gaps = 19/216 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L + FG+ + + QKE ++ L D L + ATG GKSLC+QIPAL+ V +VISPLI
Sbjct: 11 VLHRWFGYRTYRPGQKEIITHVLEGRDVLAVIATGGGKSLCYQIPALIRDGVGIVISPLI 70
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQ---PDNKVEQKALRGMYSIIYVCPETVIRLIKP--L 278
+LM DQ L++ G+ A FL S Q +E L G ++Y+ PE RL++P +
Sbjct: 71 ALMKDQVDCLAESGIPAAFLNSTQDVKDKRSIEGSILDGSLKLLYISPE---RLVQPSFI 127
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+ L +R I+LFAIDE HC+S+WGH+FRP+YR+LS++R F D+P++ALTA
Sbjct: 128 EFLKSTR-ISLFAIDEAHCISQWGHEFRPEYRKLSIIRRTFA---------DVPIIALTA 177
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TAT VR DI+ L + FV SF R NL + +
Sbjct: 178 TATPSVRSDIISELSLHNPAVFV-GSFNRENLIYRI 212
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 115/221 (52%), Gaps = 18/221 (8%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y ++++ +A+ L G A Y+A LPKS F +++ ++VAT+AFGMG
Sbjct: 235 IVYCFSKRQVTDLARVLQKNGFSALPYHADLPKSVRHETQDRFLRDEVRIIVATVAFGMG 294
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
I+K +VR ++H+ P++LE YYQE GRAGRDG A+C+L + + L+
Sbjct: 295 INKPDVRFVVHFDLPKNLEHYYQETGRAGRDGDPAECLLLYSRGDFRKIEYLIEQMAEGT 354
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ + + R L + Y + +C RA +L+ YFGE + C CD C G M +
Sbjct: 355 ERQVSLRKLHEMVGYCESRACRRA-VLLTYFGESWDKPSCGNCDSCHSGRKTM-----DG 408
Query: 693 NILMQVIAAYNEQSNSMDDDDG------IYSGIKKQKFMDR 727
+ VIAA ++ + DD G I SG +K + R
Sbjct: 409 RDTLAVIAACIDE---LKDDYGVSYLADIISGTADEKVIAR 446
>gi|359454206|ref|ZP_09243496.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20495]
gi|414070221|ref|ZP_11406208.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. Bsw20308]
gi|358048729|dbj|GAA79745.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20495]
gi|410807319|gb|EKS13298.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. Bsw20308]
Length = 607
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 138/220 (62%), Gaps = 17/220 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K ++LK+ FG+S ++ QK + A + HD LVL TG GKS+C+QIPAL+ V +VI
Sbjct: 14 KPETVLKQVFGYSEFRDGQKAVIDAAINGHDSLVLLPTGGGKSVCYQIPALVLEGVTIVI 73
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ ++L GV A ++ + + V Q+ +G+ ++YV PE V++
Sbjct: 74 SPLISLMQDQVTQLQALGVKAAYVNNSLAREEQQLVYQQLHQGLIKLLYVAPEKVLQR-D 132
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L+RL+ ++LFAIDE HCVS WGHDFRP Y RL+ L++ F +P+MAL
Sbjct: 133 FLERLSHL-NVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFA---------HVPMMAL 182
Query: 337 TATATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSVK 375
TATA R DI++ L + + ++ T SF RPN+R++++
Sbjct: 183 TATADKATRFDIVEQLKLQQ--PYIHTGSFDRPNIRYTIE 220
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 101/176 (57%), Gaps = 17/176 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK IA+ L G+ AAAY+A + Q + V T F + +++VVAT+AFGMG
Sbjct: 242 IIYCTSRKRVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMG 301
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPS----- 627
I+K NVR ++HY P+S+E+YYQE GRAGRDG A+ ++Y A++ +
Sbjct: 302 INKPNVRFVLHYDIPKSIESYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQ 361
Query: 628 -RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
RR E+Q A ++ CR +IL+ YF E + E C CD+C++ P
Sbjct: 362 RRRVEEQRFNAMASFAEA-------QTCRRQILLNYFSE-YQREPCGNCDICLNPP 409
>gi|408822198|ref|ZP_11207088.1| ATP-dependent DNA helicase [Pseudomonas geniculata N1]
Length = 601
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 134/217 (61%), Gaps = 15/217 (6%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ LL++ FG+ + Q++ + A HD LVL TG GKSLC+Q+PALL +VIS
Sbjct: 6 AHDLLQRVFGYDDFRGPQQDIVEHVAAGHDALVLMPTGGGKSLCYQVPALLRDGCGIVIS 65
Query: 221 PLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ L + GV A FL S + +VE++ L G ++YV PE ++ +
Sbjct: 66 PLIALMQDQVEALRQLGVRAEFLNSTLDAETAGRVERELLAGELDMLYVAPERLL-TGRF 124
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L L+ SR IALFAIDE HCVS+WGHDFRP+YR+L+VL E + IP +ALT
Sbjct: 125 LSLLSRSR-IALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------QIPRIALT 174
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ATA + +I + L + + FV +SF RPN+R++V
Sbjct: 175 ATADPPTQREIAERLDLQEARHFV-SSFDRPNIRYTV 210
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 88/170 (51%), Gaps = 4/170 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A++LCG G A Y+A LP F V+ ATIAFGMG
Sbjct: 233 IVYCMSRRKVEETAEFLCGQGFNALPYHAGLPPEVRANNQRRFLREDGIVMCATIAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 293 IDKPDVRFVAHTDLPKSMEGYYQETGRAGRDGEAAEAWLCYGLGDVVLLKQMIEQSEAGE 352
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
+ KQ R D + CR ++L+ FGE + + C CD C+ P
Sbjct: 353 ERKQLERGKLDHLLGYCESMQCRRQVLLAGFGETYP-QPCGNCDNCLTPP 401
>gi|224015568|ref|XP_002297435.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220967882|gb|EED86252.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 497
Score = 169 bits (429), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 142/248 (57%), Gaps = 28/248 (11%)
Query: 149 KEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHH----------DCLVLAATG 198
+E I ++ + S L+ HFGHS+ + Q L + L + D V ATG
Sbjct: 8 EESIIPLQFQTTMKSSLQTHFGHSNFRPGQLTILHSLLGTNANGTNQSEIKDACVFWATG 67
Query: 199 SGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHG---VTACFLGSGQPDNKVEQK 255
+GKSLC+Q+P L V +VISPLISLM DQC+KL+ G A +LGS Q D + E++
Sbjct: 68 AGKSLCYQLPPLHLNNVAIVISPLISLMQDQCAKLNGMGGEMEIATYLGSSQEDAQAEER 127
Query: 256 ALRGMYSIIYVCPETVIR----LIKPLQRLAESRG---IALFAIDEVHCVSKWGHDFRPD 308
ALRG Y ++YV PE + + L R+ E G I + A+DE HCVS+WGHDFRP+
Sbjct: 128 ALRGEYRLVYVTPEKLASGGGVFLDRLGRMHEGGGRGRICVIAVDESHCVSEWGHDFRPE 187
Query: 309 YRRL-SVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFR 367
+ ++ S LR + + IPL+ALTATA +V++DI+++L M SF R
Sbjct: 188 FLQIGSSLRTH-------PVLASIPLLALTATAVPRVQQDIIRNLRMHPNATIAKKSFDR 240
Query: 368 PNLRFSVK 375
PNL+ +K
Sbjct: 241 PNLKIVIK 248
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 90/175 (51%), Gaps = 19/175 (10%)
Query: 515 TIIYVPTRKE----TLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
TI+Y TRKE T +I L V+ + +L + T+ + + ++VAT+
Sbjct: 281 TIVYCATRKEVEDITAAIVSNLAHHLVRQSNNALTLDDA------TKLASSNVTIIVATV 334
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT-----LL 625
AFGMGIDK ++RR+IH+G +++E YYQ+ GRA RDG +CV+YAN L
Sbjct: 335 AFGMGIDKPDIRRVIHWGPCKTVEEYYQQIGRASRDGLHGECVMYANAHDFAKYKDDFYL 394
Query: 626 PSRRSEDQTKQAYRMLSDCFR-YGMNTSCCRAKILVEYFGEDFSHEK-CQLCDVC 678
S E +T M D + + M+ CR L+ +F E S C CDVC
Sbjct: 395 GSLSGEAKTATIRSM--DALKDFAMSMEKCRRAGLLGFFAEVPSFGSWCGTCDVC 447
>gi|313201320|ref|YP_004039978.1| ATP-dependent DNA helicase recq [Methylovorus sp. MP688]
gi|312440636|gb|ADQ84742.1| ATP-dependent DNA helicase RecQ [Methylovorus sp. MP688]
Length = 609
Score = 169 bits (429), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 133/219 (60%), Gaps = 15/219 (6%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+L+ FG++ + Q++ + D LVL TG GKSLC+QIPALL + +V+S
Sbjct: 6 AQEVLESIFGYNQFRGPQQDVVEHLAQGGDALVLMPTGGGKSLCYQIPALLRPGLAIVVS 65
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSG-QPDN--KVEQKALRGMYSIIYVCPETVI--RLI 275
PLI+LM +Q L + GV A FL S Q D +++Q+ L G I+YV PE ++ +
Sbjct: 66 PLIALMQNQVEALQQLGVEAAFLNSSLQADAAYQLQQRILSGDIKILYVAPERLMLGSFL 125
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L + G+ALFAIDE HCVS+WGHDFRP+YR+L++L E F D+P +A
Sbjct: 126 SLLDEVQAHIGLALFAIDEAHCVSQWGHDFRPEYRQLTILHERFP---------DVPRVA 176
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA R +I++ L++ +F+ +SF RPN+R+ +
Sbjct: 177 LTATADAPTRAEIIERLNLEHARQFI-SSFDRPNIRYRI 214
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 98/187 (52%), Gaps = 5/187 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A +L G A Y+A L + + +F + ++VATIAFGMG
Sbjct: 238 IVYCLSRRKVDETAAWLQSRGWNALPYHAGLDAATREKHQRQFLREEGIIMVATIAFGMG 297
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS---SMPTLLPSRRSED 632
IDK NVR + H P+S+E+YYQE GRAGRDG A+ + L SM +L S + +
Sbjct: 298 IDKPNVRFVAHLDLPKSMESYYQETGRAGRDGLQANAWMAYGLGDVVSMRQMLDSGDAPE 357
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ K+ R D + CR + ++ YFGE + C CD C+ PP+ N E A
Sbjct: 358 ERKRVERQKLDALLGFCEATGCRHQGILRYFGEAHPGD-CAQCDNCLT-PPDTWNATEAA 415
Query: 693 NILMQVI 699
I + +
Sbjct: 416 RIALSCV 422
>gi|283780735|ref|YP_003371490.1| RecQ familyATP-dependent DNA helicase [Pirellula staleyi DSM 6068]
gi|283439188|gb|ADB17630.1| ATP-dependent DNA helicase, RecQ family [Pirellula staleyi DSM
6068]
Length = 921
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 147/258 (56%), Gaps = 20/258 (7%)
Query: 168 HFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMH 227
+FG SS + Q+ + A L+ DCL + TG GKSLC+Q+PA+ G + +V+SPLI+LM
Sbjct: 17 NFGLSSFRPGQRAVIEAVLSGQDCLCIMPTGGGKSLCYQLPAIARGGLTLVVSPLIALMK 76
Query: 228 DQCSKLSKHGV-TACFLGSGQPDNKVEQKALR--GMYSIIYVCPETVIRLIKPLQRLAES 284
DQ LS G+ + C S P + E+ L G Y+++Y+ PE +R + L++L +
Sbjct: 77 DQVDSLSAIGIRSTCINSSLSPSEQRERMNLMAAGGYNLVYIAPER-LRNSQFLEKLKST 135
Query: 285 RGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQV 344
+ + L A+DE HC+S+WGHDFRPDY RL LRE G+ +ALTATAT +V
Sbjct: 136 K-VGLLAVDEAHCISEWGHDFRPDYARLGKLRERIGSPQ---------TIALTATATPRV 185
Query: 345 REDILKSLHMSKGTKFVLTSFFRPNLRFSVKH-SKTSSRASYKKDFCQLID----IYTKK 399
R+D+ K L + + F+ T F RPNL F V H SK + + +F + +Y
Sbjct: 186 RDDVAKQLQLREPQVFI-TGFARPNLHFEVWHASKEQEKQTLLLEFLESTPGCGIVYAAT 244
Query: 400 KKTGEKEKSAIPQDLDDQ 417
+K E+ + Q LD +
Sbjct: 245 RKRCEELHLLLSQHLDQK 262
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 497 NKPAERLSMLQEPLED--GLTIIYVPTRKET----LSIAKYLCGFGVKAAAYNASLPKSQ 550
+K E+ ++L E LE G I+Y TRK L ++++L K Y+A L
Sbjct: 218 SKEQEKQTLLLEFLESTPGCGIVYAATRKRCEELHLLLSQHLDQKQRKVGLYHAGLSADD 277
Query: 551 LRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLA 610
R V EF ++ ++VAT AFGMGIDK ++R ++HY P SLEAYYQEAGRAGRDG +
Sbjct: 278 RRLVQDEFMSGRMPIIVATNAFGMGIDKSDLRFVVHYNMPGSLEAYYQEAGRAGRDGLRS 337
Query: 611 DCVLYAN 617
C+L A+
Sbjct: 338 RCLLLAS 344
>gi|352106026|ref|ZP_08961137.1| ATP-dependent DNA helicase RecQ [Halomonas sp. HAL1]
gi|350598118|gb|EHA14242.1| ATP-dependent DNA helicase RecQ [Halomonas sp. HAL1]
Length = 608
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 134/223 (60%), Gaps = 17/223 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L++ FG+ S + Q+ + +A D LVL TG GKSLC+QIPALL +V+SPLI
Sbjct: 12 VLQEVFGYDSFRGPQQAIIEHVIAGGDALVLMPTGGGKSLCYQIPALLREGTAIVVSPLI 71
Query: 224 SLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKP-LQ 279
+LM DQ + L ++GV A +L S ++E + G ++YV PE RL P +Q
Sbjct: 72 ALMQDQVAALEQNGVRAAYLNSSLDYHEAVEIENRLRAGELDLLYVAPE---RLATPRMQ 128
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L E IALFAIDE HCVS+WGHDFRP+YR+LS L + F +P +ALTAT
Sbjct: 129 MLLEQNQIALFAIDEAHCVSQWGHDFRPEYRQLSHLHQRFP---------QVPRIALTAT 179
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
A + R DI++ L + + + + F RPN+R+ + ++ +++
Sbjct: 180 ADVPTRHDIMEHLQLQEAALYN-SGFDRPNIRYHIAENQGNAK 221
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 100/191 (52%), Gaps = 5/191 (2%)
Query: 497 NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHT 556
N + L ++E + I+Y +R++ A +L G+ A Y+A LP Q ++ T
Sbjct: 219 NAKEQLLRFIREHHDGEAGIVYCLSRRKVEETAAWLERQGLTALPYHAGLPAEQRQQHQT 278
Query: 557 EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616
F VVVATIAFGMGIDK +VR + H P+S+EAYYQE GRAGRDG AD +
Sbjct: 279 RFLREDGVVVVATIAFGMGIDKPDVRFVAHLNLPKSIEAYYQETGRAGRDGLPADAWMAY 338
Query: 617 NLSSMPTLLPSRR---SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
L + TL ++ + DQ K+ + D CR + L+ YFG D + C
Sbjct: 339 GLQDVITLRQMQQGSSAADQQKRIEQQKLDAMLGLCEIISCRRQALLHYFG-DHLDDPCG 397
Query: 674 LCDVCVDGPPE 684
CD C+ PPE
Sbjct: 398 NCDNCLT-PPE 407
>gi|312373074|gb|EFR20899.1| hypothetical protein AND_18334 [Anopheles darlingi]
Length = 1384
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 138/250 (55%), Gaps = 22/250 (8%)
Query: 153 IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT 212
+G ++ + K+ FG + + Q + ++A L DC VL TG GKSLC+Q+PALLT
Sbjct: 583 MGYPHSSRLQMVFKETFGLRTFRPNQLQVINATLLGRDCFVLMPTGGGKSLCYQLPALLT 642
Query: 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS------IIYV 266
V +V+SPL SL+ DQ KL+ + A L SG+ Q+ +YS ++YV
Sbjct: 643 TGVTIVVSPLKSLILDQVQKLNTLDIPAGSL-SGEAQMADVQRIYDDLYSSCPVLKLLYV 701
Query: 267 CPETV---IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANN 323
PE + + L L R + IDE HCVS WGHDFRPDY+RL +LRE F
Sbjct: 702 TPEKISSSAKFQNLLSALHRRRQLGRIVIDEAHCVSAWGHDFRPDYKRLYMLREQFP--- 758
Query: 324 LKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
D+P++ALTATA +VR D++ L + T++ L+SF RPNL++ V K A
Sbjct: 759 ------DVPIIALTATANTRVRMDVITQLKLQPDTRWFLSSFNRPNLKYLVLPKKG---A 809
Query: 384 SYKKDFCQLI 393
S K + LI
Sbjct: 810 STKGEMINLI 819
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 103/194 (53%), Gaps = 18/194 (9%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
E +++++ I+Y ++KE +A G+KA +Y+A L + E+
Sbjct: 813 GEMINLIKAKFARDTGIVYCLSKKECDQLATDFRKAGIKAKSYHAGLTDTIREATQKEWI 872
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
++++VV ATIAFGMGIDK +VR ++HY P+S+E YYQE+GRAGRDG +A C+LY N S
Sbjct: 873 GDRIKVVCATIAFGMGIDKPDVRYVLHYCMPKSIEGYYQESGRAGRDGEIATCILYYNYS 932
Query: 620 SMP---------TLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHE 670
M T + + RM++ C N + CR +EYF E F+ E
Sbjct: 933 DMQRYRKMMDNDTSISFEAKQIHMNNLLRMVNYC----ENVTDCRRTQQLEYFAEYFTSE 988
Query: 671 KC-----QLCDVCV 679
+C CD C+
Sbjct: 989 QCLSNRDTACDNCL 1002
>gi|397521446|ref|XP_003830806.1| PREDICTED: Werner syndrome ATP-dependent helicase [Pan paniscus]
Length = 1405
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 126/212 (59%), Gaps = 12/212 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D + + ATG GKSLCFQ P + GK+ +VISPLI
Sbjct: 513 LKMYFGHSSFKLVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLI 572
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q +N + L G Y I+YV PE + LQ+L
Sbjct: 573 SLMEDQVLQLKMSNIPACFLGSAQSENVLTDIKL-GKYRIVYVTPEYCSGNMGLLQQLEA 631
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GI L A+DE HC+S+WGHDFR +R+L L+ +P++ALTATA+
Sbjct: 632 DIGITLIAVDEAHCISEWGHDFRNSFRKLGSLKTALPM---------VPIVALTATASSS 682
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+REDI++ L++ + + T F RPNL V+
Sbjct: 683 IREDIVRCLNL-RNPQITCTGFDRPNLYLEVR 713
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 104/178 (58%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + + + +H F ++++ V+ATIA
Sbjct: 737 EGPTIIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFNTRKDIHHRFVRDEIQCVIATIA 796
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ A+++ LL
Sbjct: 797 FGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEI 856
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
R+E +M + +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 857 RNEKFRLYKLKMTAKMEKY-LHSSRCRRQIILSHF-EDKQVQKASLGIMGTEKCCDNC 912
>gi|389806094|ref|ZP_10203234.1| ATP-dependent DNA helicase RecQ [Rhodanobacter thiooxydans LCS2]
gi|388446093|gb|EIM02139.1| ATP-dependent DNA helicase RecQ [Rhodanobacter thiooxydans LCS2]
Length = 611
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 133/227 (58%), Gaps = 17/227 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LL+ FG+ S + Q+ + D LVL TG GKSLC+QIPALL +V+SPLI
Sbjct: 9 LLQSVFGYPSFRGQQQAVVEHLAEGGDALVLMPTGGGKSLCYQIPALLRQGTGIVVSPLI 68
Query: 224 SLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LM DQ L + GV A +L S + +VE++ L G +++YV PE + L
Sbjct: 69 ALMQDQVDALREAGVAAAYLNSSLGAEAQREVERQLLAGELNLLYVAPERL--LTSRFLG 126
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L ES +ALFAIDE HCVS+WGHDFRP+YR L VL + F +P +ALTATA
Sbjct: 127 LLESIEVALFAIDEAHCVSQWGHDFRPEYRELVVLHQRFP---------QVPRIALTATA 177
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNL--RFSVKHSKTSSRASY 385
+ RE+I++ L + + +FV +SF RPN+ R ++H+ A +
Sbjct: 178 DPRTREEIVERLALQEARRFV-SSFDRPNIGYRVGLRHNAKRQLAEF 223
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 104/201 (51%), Gaps = 9/201 (4%)
Query: 492 RTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQL 551
R L + +L+ + +D I+Y +R++ A +L GV+A Y+A L +
Sbjct: 209 RVGLRHNAKRQLAEFLQGHQDESGIVYCLSRRKVDDTAAWLAESGVEALPYHAGLDAATR 268
Query: 552 RRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD 611
+ F V+VAT+AFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+
Sbjct: 269 AKNQQRFLREDGVVMVATVAFGMGIDKPDVRFVAHLDLPRSIEGYYQETGRAGRDGLPAE 328
Query: 612 CVLYANLS---SMPTLLPSRRSEDQTKQAYRM-LSDCFRYGMNTSCCRAKILVEYFGEDF 667
+ LS +M ++ S+D+ K+ R L Y T CR ++L+ FGE
Sbjct: 329 AWMIYGLSDVVTMSQMIAQSESDDERKRVERQKLESLLAYAEATD-CRRQLLLGAFGE-- 385
Query: 668 SHE-KCQLCDVCVDGPPEMKN 687
SH C CD CV PP+ N
Sbjct: 386 SHPGACGHCDNCV-APPKTWN 405
>gi|296085510|emb|CBI29242.3| unnamed protein product [Vitis vinifera]
Length = 710
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/236 (38%), Positives = 140/236 (59%), Gaps = 18/236 (7%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
DW+ + + + FG S+ + Q+E ++A ++ D LV+ A G GKSLC+Q+PA+L V
Sbjct: 72 DWDAQADDVRFNIFGISTYRANQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAILRDGV 131
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR---GMYSIIYVCPET 270
+V+SPL+SL+ DQ L+ G+ A L S + D K KAL G I+YV PE
Sbjct: 132 ALVVSPLLSLIQDQVMGLAALGIPAYMLTSTTSKEDEKFIYKALEKGDGDLKILYVTPEK 191
Query: 271 VI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
+ R + L++ S ++L +IDE HC S+WGHDFRPDY+ L +L+ F
Sbjct: 192 ISKSKRFVSKLEKCHHSGCLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFP------- 244
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
D+P++ALTATAT +V+ D+++ LH+ K KFV ++ RPNL + V+ + R
Sbjct: 245 --DVPVVALTATATKKVQNDLMEMLHIPKCIKFV-STVNRPNLFYMVREKSSVGRV 297
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 6/164 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RKE +AK L G+ A Y+A + + RVH + +KL+V+V T+AFGMG
Sbjct: 317 IVYCFSRKECEQVAKELRERGISADYYHADMDVNARERVHLRWSNSKLQVIVGTVAFGMG 376
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K +VR +IH+ +S+E YYQE+GRAGRDG ++C+LY +P E+
Sbjct: 377 INKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGL 436
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ-LCDVC 678
Q L D +Y + CR +F E + C +CD C
Sbjct: 437 QN---LYDIVQYCQSKRECRRNAFFRHFAEPL--QDCNGMCDNC 475
>gi|357450081|ref|XP_003595317.1| ATP-dependent DNA helicase Q1 [Medicago truncatula]
gi|355484365|gb|AES65568.1| ATP-dependent DNA helicase Q1 [Medicago truncatula]
Length = 776
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 141/246 (57%), Gaps = 27/246 (10%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ HFG+ + Q EA+ A L+ DC L TG GKS+C+QIPAL +V+V+ PLI
Sbjct: 33 VLRWHFGYPDFRGLQLEAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKEGIVLVVCPLI 92
Query: 224 SLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYS--IIYVCPETVIR--LIK 276
+LM +Q L + G+ A FL S + +K+ + G S ++YV PE + +
Sbjct: 93 ALMENQVMALKEKGIAAEFLSSTKTAKAKDKIHEDLGSGKPSTRLLYVTPELIATPGFMS 152
Query: 277 PLQRLAESRG-IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L ++ SRG ++L AIDE HC+S WGHDFRP YR+LS LR + D+P++A
Sbjct: 153 KLTKI-HSRGLLSLIAIDEAHCISSWGHDFRPTYRKLSTLRSHLP---------DVPILA 202
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK--------HSKTSSRASYKK 387
LTATA +V++D+++SLHM + TSF RPN+ + V+ +S S R
Sbjct: 203 LTATAVPKVQKDVVESLHMQNAL-ILKTSFNRPNIYYEVRYKDLLDDSYSDLSDRLKSMG 261
Query: 388 DFCQLI 393
D C +I
Sbjct: 262 DVCAII 267
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 102/247 (41%), Gaps = 64/247 (25%)
Query: 494 DLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR 553
DLL+ LS + + D IIY R ++ +L G+ AAY+A L
Sbjct: 244 DLLDDSYSDLSDRLKSMGDVCAIIYCLERSMCDDLSAHLSQRGISCAAYHAGLNNKMRTS 303
Query: 554 VHTEFHENKLEVVVATIAFG---------------------------------------- 573
V ++ +K +VVVAT+AFG
Sbjct: 304 VLHDWISSKTKVVVATVAFGRKCGIPHQMVQIACTTGTPLRNRNATGIAWTTTPAESIGL 363
Query: 574 --------MGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS---MP 622
MGID+ +VR + H+ P+S+EA+YQE+GRAGRD + +LY + M
Sbjct: 364 PNLWCSFRMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLLYYGVDDRRRME 423
Query: 623 TLLPSRRSEDQTKQAYRMLSDCFRYGMNT----------SCCRAKILVEYFGEDFSHEKC 672
+L R S ++ Q+ + R + S CR KI++E FGE + C
Sbjct: 424 FIL--RNSGNKKSQSSSSQEESTRMSLTAFNQMVEYCEGSGCRRKIILESFGEQVTTSLC 481
Query: 673 -QLCDVC 678
+ CD C
Sbjct: 482 GKTCDSC 488
>gi|172036703|ref|YP_001803204.1| ATP-requiring DNA helicase [Cyanothece sp. ATCC 51142]
gi|354554517|ref|ZP_08973821.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. ATCC 51472]
gi|171698157|gb|ACB51138.1| ATP-requiring DNA helicase [Cyanothece sp. ATCC 51142]
gi|353553326|gb|EHC22718.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. ATCC 51472]
Length = 711
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 137/236 (58%), Gaps = 21/236 (8%)
Query: 160 KVNSL---LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
+ NSL LK FG+ ++ QK+ ++ L + D LV+ TG GKSLCFQ+PALL V
Sbjct: 4 QFNSLENALKYFFGYDQFRSGQKQIINEALNNKDLLVIMPTGGGKSLCFQLPALLKSGVC 63
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI- 272
+V+SPLI+LM DQ L +G+ A FL S ++ E L+G ++YV PE ++
Sbjct: 64 IVVSPLIALMQDQVDTLLDNGIGATFLNSTLNREELQSRENAILKGKIKLLYVAPERLLN 123
Query: 273 -RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
+ L L + G++ FAIDE HCVS WGHDFRP+YR+L LR + +
Sbjct: 124 DNFLNFLDFLRQKVGLSGFAIDEAHCVSAWGHDFRPEYRQLKQLRFRYP---------QV 174
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKK 387
P+ ALTATAT +VR DI++ L + T V SF RPNL + V+ SR SY +
Sbjct: 175 PMFALTATATKRVRADIIEQLGLQNPTVHV-ASFDRPNLYYEVQE---KSRRSYTQ 226
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 136/270 (50%), Gaps = 27/270 (10%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
++G IIY +RK +IA L G++A Y+A + + T F + + ++VATI
Sbjct: 234 QEGSGIIYCLSRKNVETIAFRLQQDGIEALPYHAGMYDDERAVNQTRFIRDDVRIIVATI 293
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPS 627
AFGMGI+K +VR ++HY P++LE+YYQE+GRAGRDG A+C L + +L + L+
Sbjct: 294 AFGMGINKPDVRFVVHYDLPRNLESYYQESGRAGRDGEPANCALFFSFGDLKRLEYLIDQ 353
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKN 687
+ E + + + + Y T C R+ I++ YFG+ + KC CD C + P +++
Sbjct: 354 KIDEKEQRVGRQQVRQVVDYAEGTECRRS-IILRYFGQQYKG-KCDNCDNC-NYPKPIED 410
Query: 688 LKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLAT 747
EA + +A E+ M + G KK+ KI + L+T
Sbjct: 411 WTIEAQKFLSCVARCQERF-GMSHIIDVLRGSKKK-------------KIEKYGHHLLST 456
Query: 748 -------DLLWWRGLARIMENKGYIREGDD 770
+ W+ L R + ++G++ E D
Sbjct: 457 YGIGKDKSVAEWKMLGRSLIHQGFVNETTD 486
>gi|320167845|gb|EFW44744.1| DEAD/DEAH box helicase [Capsaspora owczarzaki ATCC 30864]
Length = 1784
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 144/265 (54%), Gaps = 33/265 (12%)
Query: 157 WEVKVNSLLKKHFG-HSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
W V ++K FG + + Q E ++ ++ CLVL TG GKSLC+Q PA+++ V
Sbjct: 819 WSGDVQKAMRKVFGLNKGFRTHQLEVINCTMSGRHCLVLMPTGGGKSLCYQNPAVISKGV 878
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS-------IIYVCP 268
+V+SPL+SL+ DQ L + + A FL Q + EQ + S ++Y+ P
Sbjct: 879 TIVVSPLLSLIQDQVEALVQLNIGAVFLSGSQ--TEAEQSRVYLELSRQDERCKVVYMTP 936
Query: 269 ETV---IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLK 325
E + RL+ L L +S+ +A F IDE HCVS+WGHDFRPDY++L +L + F
Sbjct: 937 EKISHSTRLLSQLDMLYQSKRLARFVIDEAHCVSQWGHDFRPDYKQLRMLHDRFPT---- 992
Query: 326 SLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASY 385
+P+MALTATAT +VR DI+K L++ + FV SF R NLR+ V Y
Sbjct: 993 -----VPVMALTATATERVRSDIMKQLNIHQAEIFV-QSFNRENLRYQV----------Y 1036
Query: 386 KKDFCQLIDIYTKKKKTGEKEKSAI 410
KKD L DI KK K+ +
Sbjct: 1037 KKDKTTLDDIARMIKKQWPKDSGIV 1061
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 103/182 (56%), Gaps = 7/182 (3%)
Query: 502 RLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHEN 561
R+ Q P + G I+Y +RK+ ++A+ L G+ A Y+A + V ++ N
Sbjct: 1048 RMIKKQWPKDSG--IVYCLSRKDCETVARELVQRGIAATFYHAGMDPGDRAVVQRDWIGN 1105
Query: 562 KLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANL 618
+ +V+VATIAFGMGI+K +VR + HY P+SLE YYQE+GRAGRDG+ A C++ Y +
Sbjct: 1106 RKQVIVATIAFGMGINKPDVRYVFHYSLPKSLEGYYQESGRAGRDGYEAHCIMYYSYGDK 1165
Query: 619 SSMPTLLPSRRSEDQTKQAYR-MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ-LCD 676
S M +++ S + K+ ++ L+ Y N CR + YFGE F C+ CD
Sbjct: 1166 SKMESMIEKGDSSAEQKRIHKDNLAKMIMYCENVVECRRVQQLAYFGEKFDRALCKRTCD 1225
Query: 677 VC 678
C
Sbjct: 1226 NC 1227
>gi|109504268|ref|XP_001059940.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog isoform 1
[Rattus norvegicus]
gi|392354016|ref|XP_002728460.2| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Rattus
norvegicus]
Length = 1400
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 125/212 (58%), Gaps = 12/212 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGH S K Q + + + L D +V+ ATG GKSLCFQ P + TGK+ +VISPLI
Sbjct: 504 LKTYFGHCSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLI 563
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + AC LGS QP N + L G Y IIY+ PE + LQ+L
Sbjct: 564 SLMEDQVLQLEMSNIPACLLGSAQPKNILGDIKL-GRYRIIYITPEFCSGNLDLLQQLDS 622
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ GI L A+DE HC+S+WGHDFR +R L L+ +P++AL+ATA+
Sbjct: 623 NIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKTALPL---------VPVIALSATASSS 673
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+REDI++ L++ K T F RPNL V+
Sbjct: 674 IREDIIRCLNL-KDPHITCTGFDRPNLYLEVE 704
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 102/178 (57%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L V AY+A + S+ + +H F ++++ VVATIA
Sbjct: 729 EGPTIIYCPSRKVTEQVTVELGKLNVACQAYHAGMKISERKDIHHRFLRDEIQCVVATIA 788
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C L A+ ++ L
Sbjct: 789 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTTRNRLIEI 848
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
+E +M+ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 849 HNEKFRLHKLKMMVKMEKY-LHSSRCRRQIILSHF-EDKRLQKASLAVMGTEKCCDNC 904
>gi|351715433|gb|EHB18352.1| Werner syndrome ATP-dependent helicase [Heterocephalus glaber]
Length = 1411
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 123/211 (58%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGH S K Q + + + L D +V+ ATG GKSLCFQ P + GK+ +VISPLI
Sbjct: 520 LKTYFGHHSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYVGKIGLVISPLI 579
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q N +E L G Y IIY+ PE + LQ L
Sbjct: 580 SLMEDQVLQLEMSNIPACFLGSAQSKNVLEDVKL-GKYRIIYITPEFCSGNLDLLQHLEA 638
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ GI L A+DE HC+S+WGHDFR +R L L+ +P++ALTATA+
Sbjct: 639 NIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKTALPL---------VPIVALTATASSS 689
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++EDI+ L +S + TSF RPNL V
Sbjct: 690 IQEDIIHCLKLS-NPQITCTSFDRPNLYLEV 719
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 102/180 (56%), Gaps = 17/180 (9%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY +RK T + L + Y+A + + + VH F ++++ V+ATIA
Sbjct: 745 EGPTIIYCSSRKMTEKVTAELRKLNLACGTYHAGMSFNTRKDVHHRFMRDEIQCVIATIA 804
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYA----NLSSMPTLLP 626
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+A NL+ +
Sbjct: 805 FGMGINKSDIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADFNLNRHHFI-- 862
Query: 627 SRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
+E +M++ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 863 EIHNEKFRSYKLKMVAKMEKY-LHSSRCRRQIILCHF-EDRQLQKASLDIMGTENCCDNC 920
>gi|94264239|ref|ZP_01288034.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[delta proteobacterium MLMS-1]
gi|93455350|gb|EAT05554.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[delta proteobacterium MLMS-1]
Length = 605
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 131/223 (58%), Gaps = 19/223 (8%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
++ L+ FG+ S + Q+E + L D VL TG GKSLC+Q+PAL + VV+S
Sbjct: 4 IHRTLRDVFGYDSFRPQQQEIVERLLGGGDAFVLMPTGGGKSLCYQLPALHRPGLAVVVS 63
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR---GMYSIIYVCPETVIRLIKP 277
PLISLM DQ L +GV A F S ++ + R G ++YV PE RL+
Sbjct: 64 PLISLMKDQVDALRANGVRAAFYNSALGADEARRVLARMHDGQLDLLYVAPE---RLLHS 120
Query: 278 --LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L RL + + +ALFAIDE HC+S+WGHDFRP+Y +L +LR+NF +PL+A
Sbjct: 121 DFLGRLGQLK-LALFAIDEAHCISQWGHDFRPEYTKLGLLRQNFPG---------VPLIA 170
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
LTATA R DIL L ++ F+ TSF RPN+R++V+ K
Sbjct: 171 LTATAEPHTRRDILARLQIADEAAFI-TSFDRPNIRYTVRDKK 212
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 132/262 (50%), Gaps = 15/262 (5%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVA 568
P E G I+Y +RK + L G A AY+A L + F + ++VA
Sbjct: 226 PREAG--IVYCLSRKRVEEVTARLNAAGFAARAYHAGLGAEEREAAQDAFLRDDTLIIVA 283
Query: 569 TIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLL 625
T+AFGMGIDK N+R ++HY P+++E YYQE GRAGRDG A+ +L + +++ L+
Sbjct: 284 TVAFGMGIDKSNIRYVVHYDIPKNIEGYYQETGRAGRDGLPAEALLLFGFGDVAVARGLI 343
Query: 626 PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEM 685
+ ++E++ + L+ + S CR ++L+ YFGE + E C CD C++ PPEM
Sbjct: 344 DNSQNEERRRVESHKLNAMVGFA-QASGCRRRVLLGYFGEPLN-EDCGNCDTCLE-PPEM 400
Query: 686 KNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYL 745
+ EEA ++ I Q+ ++ + G + Q+ + ++ I K
Sbjct: 401 LEVTEEARKVLSCIYRVG-QAFGLNHVIDVLRGSQSQRIQQLGHHRLSTYGIGADRDKD- 458
Query: 746 ATDLLWWRGLARIMENKGYIRE 767
+W L R + + GYI +
Sbjct: 459 -----FWAALLRHLIHHGYIEQ 475
>gi|338740621|ref|YP_004677583.1| ATP-dependent DNA helicase RecQ [Hyphomicrobium sp. MC1]
gi|337761184|emb|CCB67017.1| ATP-dependent DNA helicase RecQ [Hyphomicrobium sp. MC1]
Length = 727
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 127/213 (59%), Gaps = 15/213 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+ FG+ ++ Q + + L DCL L TG GKSLC+QIPAL+ +V+SPLI+
Sbjct: 27 LENVFGYKGFRSHQSDIIRTMLGGGDCLALMPTGGGKSLCYQIPALVRPGTGIVVSPLIA 86
Query: 225 LMHDQCSKLSKHGVTACFLGSGQ---PDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L GV A FL S Q +++E++ G ++YV PE +++ + L
Sbjct: 87 LMQDQVDALRDLGVKAAFLNSTQDRATQDQIERQFAAGGLDLLYVAPERLVQ--ERTLNL 144
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
E IA+FAIDE HCVS+WGHDFRP+YR+L +L + F ++P +ALTATA
Sbjct: 145 LERSDIAIFAIDEAHCVSQWGHDFRPEYRQLKILAQRFP---------NVPRVALTATAD 195
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+ R+DI+ L + F+ SF RPN+R+++
Sbjct: 196 ERTRQDIISELSLENAATFI-ASFDRPNIRYTI 227
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 127/265 (47%), Gaps = 20/265 (7%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566
+ P + G I+Y +RK A +L G KA AY+A L ++F ++
Sbjct: 246 EHPTDAG--IVYCLSRKSVEETAAWLSSKGRKALAYHAGLDAHLRAAAQSKFLTEDGLII 303
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPT 623
VATIAFGMGIDK +VR + H P+S+E+YYQE GRAGRDG A+ + + ++ +
Sbjct: 304 VATIAFGMGIDKPDVRFVAHLNLPKSIESYYQETGRAGRDGEAANAWMAYGFQDIVQLRQ 363
Query: 624 LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPP 683
+ D K+ R D CR + L+ YFGE S E C CD C++ PP
Sbjct: 364 WINQSEGSDAFKKVQRQKLDALIGLAEMPGCRRQALLAYFGETRS-EPCGNCDNCLN-PP 421
Query: 684 EMKNLKEEANILMQ--VIAAY-NEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQ 740
E+ +L Q + A Y EQ + + +G ++ + + ++ V I +
Sbjct: 422 H----TEDGTVLAQKALSAVYRTEQRFGVTYLVDVLTGGVDERIIRNGHDRLSVYGIGKD 477
Query: 741 SQKYLATDLLWWRGLARIMENKGYI 765
+ AT W+GL R + GY+
Sbjct: 478 VPQ--AT----WKGLYRQLTALGYL 496
>gi|419839751|ref|ZP_14363154.1| ATP-dependent DNA helicase RecQ [Haemophilus haemolyticus HK386]
gi|386909096|gb|EIJ73776.1| ATP-dependent DNA helicase RecQ [Haemophilus haemolyticus HK386]
Length = 619
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 131/216 (60%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK FG+ S + Q+E ++A L D LV+ ATG+GKSLC+QIPAL + +VISPL
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A FL S Q +V+ K + G ++YV PE V +
Sbjct: 78 ISLMKDQVDQLQANGIEADFLNSSQTLEQQQRVQNKLISGQLKLLYVSPEKV--MTNSFF 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L ++ AIDE HC+S+WGHDFRP+Y +L L+ +F P+MALTAT
Sbjct: 136 QLISYSKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFP---------HAPIMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A R+DIL L++ +++ SF RPN+R++++
Sbjct: 187 ADYATRQDILTHLNLENPHRYI-GSFDRPNIRYTLE 221
Score = 125 bits (314), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 154/305 (50%), Gaps = 36/305 (11%)
Query: 479 SPHRDRDTDRSFERTDLLN------KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYL 532
+PHR SF+R ++ KP E+L + IIY +R + IA+ L
Sbjct: 203 NPHR---YIGSFDRPNIRYTLEEKYKPMEQLIRFVLAQKGKSGIIYCNSRNKVERIAESL 259
Query: 533 CGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQS 592
GV AAAY+A + + RV +F + ++VVVATIAFGMGI+K NVR + H+ P+S
Sbjct: 260 RNKGVSAAAYHAGMETAFRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRS 319
Query: 593 LEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLL------PSRRSEDQTKQAYRMLSD 643
+E+YYQE GRAGRD A+ VL+ A+ + + +L P R+ E +A ++
Sbjct: 320 IESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAE 379
Query: 644 CFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYN 703
+ CR +L+ YFGE C CD+C+D P + L + ++ +
Sbjct: 380 -------SQTCRRLVLLNYFGEH-RQTPCNNCDICLDPPKKYDGLVDAQKVMSTIYRV-- 429
Query: 704 EQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENK 762
Q + G+ QK ++R + K+ V I +++S+++ W+ + R + +
Sbjct: 430 GQCFGAHYVIAVLRGMHNQKIIERQHDKLSVYGIGKDKSKEH-------WQSVIRQLIHL 482
Query: 763 GYIRE 767
G++++
Sbjct: 483 GFVQQ 487
>gi|407775074|ref|ZP_11122370.1| ATP-dependent DNA helicase RecQ [Thalassospira profundimaris
WP0211]
gi|407282022|gb|EKF07582.1| ATP-dependent DNA helicase RecQ [Thalassospira profundimaris
WP0211]
Length = 610
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 132/217 (60%), Gaps = 19/217 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L++ FG+ S + Q E + +A +D LVL TG GKSLC+Q+PAL VV+SPLI
Sbjct: 16 VLQEVFGYDSFRGQQAEIIDHVIAGNDALVLMPTGGGKSLCYQVPALCRPGTAVVVSPLI 75
Query: 224 SLMHDQCSKLSKHGVTACFLGSG-QPD--NKVEQKALRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ L++ GV A F+ S PD ++E +A+ G ++YV PE R + L
Sbjct: 76 ALMKDQVDALNQLGVKAAFINSTLAPDAAREIETRAVDGDIDLLYVAPERFASDRFLNLL 135
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
R++ I+LFAIDE HCVS+WGHDFRP+YRRL +L F +P +ALTA
Sbjct: 136 DRIS----ISLFAIDEAHCVSQWGHDFRPEYRRLDLLPTRFA---------HVPRIALTA 182
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
TA R+DI ++LH++ F+ T F RPN+ + ++
Sbjct: 183 TADTPTRKDIAENLHLTDAQCFI-TGFDRPNITYRIE 218
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 104/183 (56%), Gaps = 8/183 (4%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE--FHE 560
LS L + I+Y +R++T +A++L G A Y+A L + + R++H + E
Sbjct: 228 LSFLNREHAEDAGIVYCLSRRKTEDVAQWLSENGRPALPYHAGLAQ-ETRQLHQDRFLRE 286
Query: 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
+ L ++ AT+AFGMGIDK NVR + H P+S+EAYYQE GRAGRDG A+ + +LS
Sbjct: 287 DGL-IICATVAFGMGIDKPNVRFVAHLNLPKSMEAYYQETGRAGRDGLPANAWMNYDLSD 345
Query: 621 MPTLLPSRRSEDQTKQAYRMLS---DCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDV 677
+ ++ D + R+ S D T+ CR ++++ YFGED HE C CD
Sbjct: 346 IVSIRSMVAGSDAPEAQKRIESRKLDALVGLAETTRCRRQVILSYFGED-RHEPCGNCDT 404
Query: 678 CVD 680
C++
Sbjct: 405 CLE 407
>gi|426256366|ref|XP_004021811.1| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase [Ovis aries]
Length = 1446
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 126/211 (59%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + G + +VISPLI
Sbjct: 547 LKTYFGHSSFKPVQWKVIHSVLEERKDNVVVMATGYGKSLCFQYPPVYVGGIGLVISPLI 606
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q N VE L G Y I+Y+ PE + LQ+L
Sbjct: 607 SLMEDQVLQLEISSIPACFLGSAQSKNVVEDIKL-GKYRIVYLTPEFCSGNLNLLQQLEA 665
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ GI L A+DE HC+S+WGHDFR +R L +LK++ +P++A+TATA
Sbjct: 666 NIGITLIAVDEAHCISEWGHDFRSSFRALC---------SLKAVLPQVPIVAVTATAGSS 716
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
VREDI++ L + K + T F RPNL V
Sbjct: 717 VREDIVRCLKL-KDPQITCTGFDRPNLYLEV 746
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 98/155 (63%), Gaps = 4/155 (2%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A L + ++VH F ++++ V+AT+A
Sbjct: 772 EGPTIIYCPSRKMTEQVTAELKKLNLACGTYHAGLSINLRKQVHHRFMRDEIQCVIATVA 831
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ A+++ LL
Sbjct: 832 FGMGINKADIRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADMNLNRHLLGEI 891
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYF 663
R+++ +ML+ +Y + +S CR +I++ +F
Sbjct: 892 RNKEFQLYKLKMLAKMEKY-LYSSKCRRQIILSHF 925
>gi|167763147|ref|ZP_02435274.1| hypothetical protein BACSTE_01517 [Bacteroides stercoris ATCC
43183]
gi|167698441|gb|EDS15020.1| ATP-dependent DNA helicase RecQ [Bacteroides stercoris ATCC 43183]
Length = 604
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 130/216 (60%), Gaps = 20/216 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + L +D LVL TG GKS+C+Q+PALL VV+SPLIS
Sbjct: 5 LKTYFGYDSFRPLQEEIIRHILDGNDALVLMPTGGGKSICYQLPALLREGTAVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVIRLIKPLQ 279
LM DQ L +G++A L S +++ E ALR G ++Y+ PE +L+
Sbjct: 65 LMKDQVEALCANGISAGALNSS--NDETENAALRRACMEGRLKLLYISPE---KLLAEAN 119
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L I+LFAIDE HC+S+WGHDFRP+Y ++ +L + F +P++ALTAT
Sbjct: 120 YLLRDMHISLFAIDEAHCISQWGHDFRPEYAQMGILHQQFP---------HVPIIALTAT 170
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A REDI++ LH++ F+ +SF RPNL +VK
Sbjct: 171 ADKITREDIIRQLHLNHPRTFI-SSFDRPNLSLTVK 205
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 104/178 (58%), Gaps = 5/178 (2%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566
+ P E G IIY +R +T S+A+ L G++ A Y+A L S +F ++++VV
Sbjct: 223 RHPGESG--IIYCMSRSKTESVAQMLQKHGIRTAVYHAGLSPSLRDEAQDDFINDRVQVV 280
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLP 626
ATIAFGMGIDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L+ + L
Sbjct: 281 CATIAFGMGIDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSLADLILLTK 340
Query: 627 SRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
Q L +Y + CR +IL+ YFGE H+ C CDVC + PPE
Sbjct: 341 FATESGQQNINLEKLQRMQQYA-ESDICRRRILLSYFGEIADHD-CGNCDVCKN-PPE 395
>gi|427712781|ref|YP_007061405.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 6312]
gi|427376910|gb|AFY60862.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 6312]
Length = 732
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 129/216 (59%), Gaps = 17/216 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ + + Q E ++A L D L + TG GKS+CFQ+PALL V +V+SPLI+
Sbjct: 7 LKHYFGYEAFRPGQAEIINASLNQQDVLAILPTGGGKSICFQLPALLKPGVTLVVSPLIA 66
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L K+G+ A FL S + + L G ++YV PE ++ L
Sbjct: 67 LMLDQVLALQKNGIPATFLNSTLAAAEARARIHSILNGEVKLLYVAPERLVSDSFTALLA 126
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ ++ GIA F +DE HCVS+WGHDFRPDYR+LS LRE F + IP+MALTAT
Sbjct: 127 NIHQTVGIASFVVDEAHCVSEWGHDFRPDYRQLSRLRELFPS---------IPMMALTAT 177
Query: 340 ATIQVREDILKSLHMSKGTKFV-LTSFFRPNLRFSV 374
AT VR DI + L + + F+ + SF RPNL + V
Sbjct: 178 ATHCVRADITEQLSLKQ--PFIHVASFNRPNLYYEV 211
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 124/269 (46%), Gaps = 20/269 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G IIY +RK +A L G+ A Y+A L T F + ++++VAT+A
Sbjct: 232 EGSGIIYCMSRKNVEKLASELNENGISALPYHAGLNNDTRTDHQTRFIRDDVQIMVATVA 291
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY--------ANLSSMPT 623
FGMGI+K +VR +IHY PQ++E YYQE+GR GRDG A C L+ A+
Sbjct: 292 FGMGINKPDVRFVIHYDLPQTIEGYYQESGRGGRDGEPARCTLFFSPGDIKQADWFIQNK 351
Query: 624 LLPSRRS--EDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
+ P ED+ + A + L Y +++ CR L+ YFGE F C CD C
Sbjct: 352 VHPETNEPLEDEQRIARQQLRQIAAYA-DSTLCRRTTLLGYFGEAFPG-NCGQCDNC-RF 408
Query: 682 PPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQS 741
P ++ EA + +A E+ S D + G + K + + I
Sbjct: 409 PKPKQDWTIEAQKFLSCVARTGERFGSRYIID-VLRGSTRDKVTKNGHETLSTFGIG--- 464
Query: 742 QKYLATDLLWWRGLARIMENKGYIREGDD 770
L + W+ LAR + + + E DD
Sbjct: 465 ---LDKSIKEWQHLARSLVQQNLVNESDD 490
>gi|397781220|ref|YP_006545693.1| ATP-dependent DNA helicase RecQ [Methanoculleus bourgensis MS2]
gi|396939722|emb|CCJ36977.1| ATP-dependent DNA helicase RecQ [Methanoculleus bourgensis MS2]
Length = 604
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 134/217 (61%), Gaps = 17/217 (7%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+S+L+K+FG++S Q+E + A LA D L + ATG GKSLC+Q+PAL+ G + VV+SP
Sbjct: 5 HSILEKYFGYTSFLPHQEEIIDAVLAQRDVLAVMATGGGKSLCYQLPALVFGGLTVVVSP 64
Query: 222 LISLMHDQCSKLSKHGVTACFLGS--GQPDNK-VEQKALRGMYSIIYVCPETVIRLIKP- 277
LI+LM DQ L +G+ A + S G + + +E+ L G ++YV PE R ++P
Sbjct: 65 LIALMKDQVDGLRANGIPAATINSSLGYGERRIIERVILEGRIRVLYVSPE---RAVQPF 121
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L + + L AIDE HC+S WGH+FRP+YRRL VL+E F A +P++ALT
Sbjct: 122 FLSLLKKADVRLIAIDEAHCISMWGHNFRPEYRRLRVLKERFPA---------VPVIALT 172
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ATA V++DI K L + +FV SF R NL + V
Sbjct: 173 ATAIPAVQDDIAKQLALKNPARFV-GSFNRTNLTYRV 208
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 126/229 (55%), Gaps = 16/229 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF RT+L + P R + L E +D IIY ++K T +A+ L G G A
Sbjct: 198 SFNRTNLTYRVVPKTRYFPRLVRYLNEHRDDA-GIIYCFSQKATEDLAEKLRGKGFSALP 256
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP + +R H E F + ++ AT+AFGMGIDK +VR +IH P+ LE+YYQE
Sbjct: 257 YHAGLPDA-VRDEHQEAFSHGDVGIICATVAFGMGIDKPDVRFVIHTDLPKDLESYYQET 315
Query: 601 GRAGRDGHLADCVLYANLSSMPTL--LPSRRSEDQTKQ--AYRMLSDCFRYGMNTSCCRA 656
GRAGRDG ADC+L+ + T+ L + D T++ AYR Y T+ CR
Sbjct: 316 GRAGRDGEPADCILFYSRGDYNTIRYLIEKECADATRKDAAYRKAGAMLDY-CETTGCRR 374
Query: 657 KILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQ 705
K L+ YFGE + E+C CD C + P ++ + A++++ I+ E+
Sbjct: 375 KFLLTYFGEAYPEERCGGCDRC-ETPVKVFDGTRAASMIIACISEVGER 422
>gi|348578015|ref|XP_003474779.1| PREDICTED: Werner syndrome ATP-dependent helicase-like [Cavia
porcellus]
Length = 1486
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 127/211 (60%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGH + K Q + + + L D +V+ ATG GKSLCFQ P + GK+ +V+SPLI
Sbjct: 515 LKTYFGHHNFKPVQWKVIYSVLEERRDNVVVMATGYGKSLCFQYPPVYLGKIGIVVSPLI 574
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q +N +E L G Y IIY+ PE + L++L
Sbjct: 575 SLMEDQVLQLEMSNIPACFLGSAQSNNVLEDAKL-GKYRIIYITPEFCSGNLDLLRQLQA 633
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ GIAL A+DE HC+S+WGHDFR +R L L+ +P++ALTATA+
Sbjct: 634 NIGIALIAVDEAHCISEWGHDFRSSFRTLGSLKTALPL---------VPIVALTATASSS 684
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++EDI++ L ++ + TSF RPNL V
Sbjct: 685 IQEDIIRCLKLN-NPQITCTSFDRPNLYLEV 714
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 135/279 (48%), Gaps = 35/279 (12%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + + VH F ++++ ++ATIA
Sbjct: 740 EGPTIIYCPSRKMTEQVTAELRKLNLACETYHAGMSSGTRKDVHHRFMRDEIQCIIATIA 799
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYA----NLSSMPTLLP 626
FGMGI+K ++R+IIHYG P+ +E+YYQE GRAGRDG + C VL+A NL+
Sbjct: 800 FGMGINKPDIRKIIHYGAPKEMESYYQEVGRAGRDGLPSSCHVLWAPADINLNRYRFF-- 857
Query: 627 SRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
+E +M++ +Y ++++ CR +I++ +F ED +K L CD C
Sbjct: 858 EIHNEKFRLYKLKMVAKMEKY-LHSNRCRRQIILSHF-EDKKLQKVSLDIMGTEKCCDNC 915
Query: 679 ----------VDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
D ++L +A +L+ + E+ + G Q+ D+
Sbjct: 916 RSRLNHCHSISDSDDTSQDLGPQAFLLLSAVDILQEKFG-IGIPILFLRGSSSQRLPDKY 974
Query: 729 NLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIRE 767
++Q++ WW+ AR + +G++ E
Sbjct: 975 RRHSLFGAGKDQTES-------WWKAFARHLMTEGFLAE 1006
>gi|295102974|emb|CBL00518.1| ATP-dependent DNA helicase, RecQ family [Faecalibacterium
prausnitzii SL3/3]
Length = 525
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 135/236 (57%), Gaps = 19/236 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+S+LKK FG+ S + Q++ +S LA D L + TG+GKS+C+Q+PALL + +V+SP
Sbjct: 5 HSILKKVFGYDSFRPGQEQIVSRLLAGQDVLAVMPTGAGKSICYQVPALLLPGITIVVSP 64
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKP- 277
L+SLM DQ L + GV A FL + DN+ + +A G Y IIYV PE RL P
Sbjct: 65 LVSLMKDQVGALVQAGVAAAFLNNSLTDNQKALMLHRAREGWYKIIYVAPE---RLEMPG 121
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
QR A+ R I++ +DE HC+S+WG DFRP Y R+ + + + + A T
Sbjct: 122 FQRFAQERQISMVTVDEAHCISQWGQDFRPSYLRIKEFVDGLPSRPV--------IGAFT 173
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLI 393
ATAT VREDI L + + V TSF RPNL F + + S + K+ +L+
Sbjct: 174 ATATAHVREDIRTHLALQAPYE-VTTSFDRPNLYFETRRALPSQK---PKELLELV 225
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 29/222 (13%)
Query: 489 SFERTDLL---------NKPAERLSMLQEPLEDG--LTIIYVPTRKETLSIAKYLCGFGV 537
SF+R +L KP E L ++ L++G I+Y T ++ + L +
Sbjct: 199 SFDRPNLYFETRRALPSQKPKELLELV---LKEGNHAGIVYCSTTRQVDETVQLLQSRSI 255
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
+AAAY+A L R+ +F ++++V+VAT AFGMGIDK NVR +IHY P+ LE+YY
Sbjct: 256 RAAAYHAKLDADTRRQNQDDFLYDRVQVMVATNAFGMGIDKPNVRFVIHYNMPKDLESYY 315
Query: 598 QEAGRAGRDGHLADCVLYANLSSMPTL-------------LPSRRSEDQTKQAYRMLSDC 644
QEAGRAGRDG A C L + + + T+ LP+ + ++A L
Sbjct: 316 QEAGRAGRDGQPARCTLLYSGTDVRTIRFFIDKEREADNGLPADVKAEAARKAEERLKYM 375
Query: 645 FRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMK 686
Y C R L++YFGE + +KC C C+ E +
Sbjct: 376 TFYSTTQHCLRG-FLLQYFGEA-APKKCGNCSCCLAAEQEAQ 415
>gi|313214693|emb|CBY40985.1| unnamed protein product [Oikopleura dioica]
Length = 596
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 102/273 (37%), Positives = 148/273 (54%), Gaps = 15/273 (5%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
L+++FGHS ++ Q +S+ + D LV+ ATG GKSLCFQ P L V+ +SPL
Sbjct: 91 FLRENFGHSQFRDNQWRVISSIIYKRTDQLVIMATGHGKSLCFQYPTLWMNAHVICVSPL 150
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGM-YSIIYVCPETVIRLIKPLQRL 281
ISLM DQ +L+ G+ ACFLGS Q ++ + Y IYVCPE + + I L+R+
Sbjct: 151 ISLMQDQVDQLNAKGIPACFLGSAQNQKRIVLANIYNRKYKAIYVCPEWIEKNILQLRRI 210
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+AL AIDE HCVS+WGHDFR Y G ++LK L + P++ALT TAT
Sbjct: 211 MSKIPVALIAIDEAHCVSEWGHDFRKAY---------MGLSSLKQLSPNTPVVALTGTAT 261
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFC---QLIDIYTK 398
+ +R++I+K L +S V SF RPN+ VK T D + I IY +
Sbjct: 262 VNMRDEIIKCLDLSNAQTTV-GSFDRPNIFIKVKKKTTMFDDLINSDAILPYKSIIIYCR 320
Query: 399 KKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESR 431
K+ E + + + ++ T + +S + R
Sbjct: 321 TKQLSEDVATKLAELKNETKSTFYHAGLSTDDR 353
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 112/209 (53%), Gaps = 25/209 (11%)
Query: 489 SFERTDLLNKPAERLSMLQEPLE-DGL-----TIIYVPTRKETLSIAKYLCGFG--VKAA 540
SF+R ++ K ++ +M + + D + IIY T++ + +A L K+
Sbjct: 283 SFDRPNIFIKVKKKTTMFDDLINSDAILPYKSIIIYCRTKQLSEDVATKLAELKNETKST 342
Query: 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A L + EF + +V+VATIAFGMGIDK +VRR+IHYG P SLEAYYQE
Sbjct: 343 FYHAGLSTDDRESIQNEFLRGQTKVIVATIAFGMGIDKADVRRVIHYGIPSSLEAYYQEI 402
Query: 601 GRAGRDGHLADCVLYANLSS--------MPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTS 652
GRAGRDG +DC+++ N T P R+ +Q + ++ + + F +T+
Sbjct: 403 GRAGRDGKSSDCIVFFNEQDKFIAEHFIKKTSNPKRK--EQLIKGFQDVMNLF----STT 456
Query: 653 CCRAKILVEYFGEDFSHEKCQL---CDVC 678
CR + +++YFGE + CD+C
Sbjct: 457 TCRREFILDYFGEKIDRSRTDFHVCCDIC 485
>gi|339048395|ref|ZP_08647333.1| ATP-dependent DNA helicase RecQ [gamma proteobacterium IMCC2047]
gi|330722396|gb|EGH00243.1| ATP-dependent DNA helicase RecQ [gamma proteobacterium IMCC2047]
Length = 266
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 142/231 (61%), Gaps = 16/231 (6%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ LL+ +G+ + + Q + +SA L DC+VL TG GKSLC+Q+PALL + +V+
Sbjct: 6 EAQQLLQSTYGYEAFRGQQADIISAALEGDDCMVLMPTGGGKSLCYQLPALLRDGLGIVV 65
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + G+ A +L S + ++ ++ +G I+Y+ PE +I+ +
Sbjct: 66 SPLIALMQDQVNALQQLGINAAYLNSTLSLEEQQQINKQLRKGTIDILYIAPERLIQE-R 124
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
LQ L + + I+L AIDE HCVS+WGHDFR DY L +LR++F +P MAL
Sbjct: 125 SLQLLRQLK-ISLIAIDEAHCVSQWGHDFRQDYLNLHLLRDHFPG---------VPRMAL 174
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKK 387
TATA + R++I++ L + +FV + F RPN+R+SV+ KT +R K
Sbjct: 175 TATADQRTRQEIVERLQLDNPQRFV-SGFDRPNIRYSVQ-PKTDARKQLIK 223
>gi|224026746|ref|ZP_03645112.1| hypothetical protein BACCOPRO_03503 [Bacteroides coprophilus DSM
18228]
gi|224019982|gb|EEF77980.1| hypothetical protein BACCOPRO_03503 [Bacteroides coprophilus DSM
18228]
Length = 608
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 140/252 (55%), Gaps = 26/252 (10%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG++ + Q+E ++ L D LVL TG GKS+C+Q+PAL+ +V+SPLIS
Sbjct: 5 LKSYFGYTQFRPLQQEIITCILEKRDTLVLMPTGGGKSICYQLPALMMEGTAIVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + ++G ++Y+ PE RL+ L L
Sbjct: 65 LMKDQVESLQANGIIARALNSSNDETVNANLRFECMQGRVKLLYISPE---RLLSELNFL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+ ++LFAIDE HC+S+WGHDFRP+Y +L VLR+ F ++P++ALTATA
Sbjct: 122 LKDIRVSLFAIDEAHCISQWGHDFRPEYTQLKVLRQQFP---------NVPIVALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLID------- 394
R+DI++ L M F+ +SF RPNL VK + + + Q ID
Sbjct: 173 KITRQDIVQQLAMRNPQVFI-SSFDRPNLSLEVK--RGYQQKEKIRSILQFIDRHPGESG 229
Query: 395 -IYTKKKKTGEK 405
IY + T EK
Sbjct: 230 IIYCMSRNTTEK 241
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 122/225 (54%), Gaps = 14/225 (6%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566
+ P E G IIY +R T +A+ L G+ A Y+A L + +F +++++V
Sbjct: 223 RHPGESG--IIYCMSRNTTEKVAEMLEDHGLHVAVYHAGLSTAARDAAQDDFINDRVQIV 280
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLP 626
ATIAFGMGIDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ + + L
Sbjct: 281 CATIAFGMGIDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSFGDIVLLSK 340
Query: 627 SRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMK 686
+Q + L+ +Y T CR +IL+ YFGE H+ C CDVC + PPE
Sbjct: 341 FAAESNQQEINLEKLNRMQQYA-ETDICRRRILLNYFGETMDHD-CGNCDVCRN-PPE-- 395
Query: 687 NLKEEANILMQ----VIAAYNEQSNSMDDDDGIYSGIKKQKFMDR 727
+ + I++Q IA ++Q + D I G Q+ +DR
Sbjct: 396 --RFDGTIIVQKALSAIARTDQQIGTRTLTD-ILKGAATQEIIDR 437
>gi|345495259|ref|XP_001605753.2| PREDICTED: Bloom syndrome protein homolog [Nasonia vitripennis]
Length = 1426
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 133/225 (59%), Gaps = 20/225 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++ ++ FG S + Q +A++A + +DC +L TG GKSLC+Q+PALLT V +V+SPL
Sbjct: 668 NVFRQKFGLYSFRPNQLQAINAAICGYDCFILMPTGGGKSLCYQLPALLTPGVTIVVSPL 727
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGM------YSIIYVCPETVI---R 273
SL+ DQ KL ++A L S D + Q R + ++Y+ PE + +
Sbjct: 728 KSLIIDQVQKLISLDISAAHLSSSVTDEQA-QSVYRELAKKEPSLKLLYLTPEKISASQK 786
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
+ L+ L E +A F IDE HCVS+WGHDFRPDY++L +LR+N+ +P
Sbjct: 787 IGDALRALYERGMLARFVIDEAHCVSQWGHDFRPDYKKLQLLRKNYPK---------VPT 837
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
MALTATAT +VR DIL L M+ K+ ++SF RPNL + V K
Sbjct: 838 MALTATATPRVRTDILHQLGMT-NPKWFMSSFNRPNLHYVVTSKK 881
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 99/192 (51%), Gaps = 10/192 (5%)
Query: 497 NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHT 556
N E + M++ + I+Y +RK+ S A + G+KA +Y+A L Q +
Sbjct: 884 NSTEEIIEMIKRDFRNDCGIVYCLSRKDCDSFADTMKSNGIKALSYHAGLSDHQRLEIQG 943
Query: 557 EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL-- 614
+ +++VV ATIAFGMGIDK NVR +IH P+S+E YYQE+GRAGRDG A+C+L
Sbjct: 944 RWISEQIKVVCATIAFGMGIDKPNVRFVIHATLPKSIEGYYQESGRAGRDGENAECILFY 1003
Query: 615 -YANLSSMPTLLPSRRSEDQTKQAYRM--LSDCFRYGMNTSCCRAKILVEYFGEDFSHEK 671
Y ++ ++ + + Q M L + N + CR + + YFGE F
Sbjct: 1004 HYGDMMRHRKMIEGDSTSNWEAQKTHMDNLFKIVAFCENKTDCRRGLQLNYFGEMFDRSI 1063
Query: 672 C-----QLCDVC 678
C CD C
Sbjct: 1064 CIARKQTTCDNC 1075
>gi|194366875|ref|YP_002029485.1| ATP-dependent DNA helicase RecQ [Stenotrophomonas maltophilia
R551-3]
gi|194349679|gb|ACF52802.1| ATP-dependent DNA helicase RecQ [Stenotrophomonas maltophilia
R551-3]
Length = 601
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 135/217 (62%), Gaps = 15/217 (6%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ LL++ FG+ + Q++ + A HD LVL TG GKSLC+Q+PALL +VIS
Sbjct: 6 AHDLLQRVFGYDDFRGPQQDIVEHVAAGHDALVLMPTGGGKSLCYQVPALLRDGCGIVIS 65
Query: 221 PLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ L + GV A +L S + +VE++ L G ++YV PE ++ +
Sbjct: 66 PLIALMQDQVEALRQLGVRAEYLNSTLDAETAGRVERELLAGELDMLYVAPERLL-TGRF 124
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L L+ SR IALFAIDE HCVS+WGHDFRP+YR+L+VL E + +IP +ALT
Sbjct: 125 LSLLSRSR-IALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------EIPRIALT 174
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ATA + +I + L + + FV +SF RPN+R++V
Sbjct: 175 ATADPPTQREIAERLDLQEARHFV-SSFDRPNIRYTV 210
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 4/170 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A++LC G A Y+A LP F V+ ATIAFGMG
Sbjct: 233 IVYCMSRRKVEETAEFLCTQGFNALPYHAGLPSEVRANNQRRFLREDGIVMCATIAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 293 IDKPDVRFVAHTDLPKSMEGYYQETGRAGRDGEAAEAWLCYGLGDVVLLKQMIEQSEAGE 352
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
+ KQ R D + CR ++L+ FGE + + C CD C+ P
Sbjct: 353 ERKQLERGKLDHLLGYCESMQCRRQVLLAGFGETYP-KPCGNCDNCLTPP 401
>gi|357137820|ref|XP_003570497.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Brachypodium
distachyon]
Length = 777
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 139/236 (58%), Gaps = 27/236 (11%)
Query: 148 PKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQI 207
PKE+E ++LK++FG+S + Q EA+ A L+ DC L TG GKS+C+QI
Sbjct: 21 PKELE----------NVLKQYFGYSGFRGRQLEAIEAVLSGRDCFCLMPTGGGKSMCYQI 70
Query: 208 PALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYS-- 262
PAL+ +V+VISPLI+LM +Q + L GV A FL S Q N++ + G S
Sbjct: 71 PALVKAGIVLVISPLIALMENQVTSLKSKGVPAEFLSSTQTAKNKNEIYEDLDSGNPSLK 130
Query: 263 IIYVCPETVIRL-IKPLQRLAESRG-IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFG 320
++YV PE V K SRG + L AIDE HC+S WGHDFRP YR++S LR+ F
Sbjct: 131 LLYVTPELVATFGFKAKLTKLYSRGLLGLVAIDEAHCISTWGHDFRPSYRKISSLRKQFP 190
Query: 321 ANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
DIP++ALTATA +V++D++ SL + + + SF RPN+ + V++
Sbjct: 191 ---------DIPILALTATAVPKVQKDVISSLCL-QNPVILRASFNRPNIFYEVRY 236
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 14/198 (7%)
Query: 494 DLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR 553
DLL+ +S L + + +IIY R + +L G+ +A Y+A L
Sbjct: 238 DLLDDVYSDISNLLKSSGNVCSIIYCLERAACDDLNMHLSQQGISSAVYHAGLNSKVRSA 297
Query: 554 VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV 613
V ++ ++ +VVVAT+AFGMGID+ +VR + H+ P+S+E++YQE+GRAGRD + V
Sbjct: 298 VLDDWLSSRTQVVVATVAFGMGIDRQDVRIVCHFNLPKSMESFYQESGRAGRDQQPSRSV 357
Query: 614 LYANLSSMPTLLPSRRSED------------QTKQAYRMLSDCFRYGMNTSCCRAKILVE 661
LY L + R+ + +++A S Y ++SC R KI +E
Sbjct: 358 LYYGLDDRRRMEFILRNTNSKKSQPSSSSSELSEKALADFSQIVDYCESSSCRRKKI-IE 416
Query: 662 YFGEDFSHEKCQL-CDVC 678
FGE CQ CD C
Sbjct: 417 SFGEKVQPTLCQRSCDAC 434
>gi|195112008|ref|XP_002000568.1| GI22449 [Drosophila mojavensis]
gi|193917162|gb|EDW16029.1| GI22449 [Drosophila mojavensis]
Length = 1409
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 161/291 (55%), Gaps = 28/291 (9%)
Query: 111 SVSGSVVSPSIVEEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWE--VKVNSLLKKH 168
S SG+ +P V QK ++ N + + ++ + G +E ++ L
Sbjct: 594 STSGATSAPVAVTAQK-----IEANFHSNVHNDGITGEFD---GQKYEHSTRLMQALSFS 645
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG S + Q + ++A L +DC VL TG GKSLC+Q+PA+LT V +VISPL SL+ D
Sbjct: 646 FGLKSFRPNQLQVINAALLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFD 705
Query: 229 QCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETV---IRLIKPLQR 280
Q SKLS + A + Q ++V + ++ + ++YV PE + R L +
Sbjct: 706 QVSKLSSLDICAKSISGDQSLDEVMTIYRDLESHPPLVKLLYVTPEKISSSPRFQDTLDQ 765
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L + I+ F IDE HCVS+WGHDFRPDY++L +LR+ F ++P MALTATA
Sbjct: 766 LNANNYISRFVIDEAHCVSQWGHDFRPDYKKLGILRKRFP---------NVPTMALTATA 816
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQ 391
T +VR+DIL+ L+++ K+ L+SF R NLR+ V K S ++F Q
Sbjct: 817 TPRVRQDILQQLNLTH-CKWFLSSFNRRNLRYQVLPKKGVSTLDDMRNFIQ 866
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 101/174 (58%), Gaps = 10/174 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RKE +AK +C G++A +Y+A L ++ NK+ V+ ATIAFGMG
Sbjct: 875 IIYCLSRKECDEVAKKMCAVGIRALSYHAGLTDVVRESRQKDWITNKVRVICATIAFGMG 934
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL----PSRRSE 631
IDK +VR ++HY P+S+E YYQEAGRAGRDG +ADC+LY N S M L R +
Sbjct: 935 IDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGEIADCILYYNYSDMQRLKKMMDADRALQ 994
Query: 632 DQTKQAY-RMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-----QLCDVCV 679
K+ + L+ Y N + CR ++YFGE F+ E+C CD C+
Sbjct: 995 YHVKKIHIENLNRIVGYCENITDCRRAQQLDYFGEHFTSEQCLEDRRTACDNCL 1048
>gi|71282216|ref|YP_266851.1| ATP-dependent DNA helicase RecQ [Colwellia psychrerythraea 34H]
gi|71147956|gb|AAZ28429.1| ATP-dependent DNA helicase RecQ [Colwellia psychrerythraea 34H]
Length = 615
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 138/232 (59%), Gaps = 23/232 (9%)
Query: 152 EIGSDWEVKVNSLL----KKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQI 207
EI ++ + N+LL K +FG+ S + Q + +++ L D LVL TG GKSLC+Q+
Sbjct: 13 EISTELSAENNALLLDTLKHYFGYESFREGQAKIINSLLQGQDSLVLMPTGGGKSLCYQL 72
Query: 208 PALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSII 264
PA+L V VV+SPLI+LM DQ L++ G++A F+ S +++ + RG ++
Sbjct: 73 PAVLLPGVTVVVSPLIALMKDQVDGLTRQGISAAFINSSLEQSEISDIFARLGRGEIKLL 132
Query: 265 YVCPE--TVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGAN 322
YV PE T ++ L +L ++LFAIDE HC+S+WGHDFRP Y +L L++NF
Sbjct: 133 YVAPERLTNYYFLQSLNQLP----LSLFAIDEAHCISQWGHDFRPAYTKLQCLKQNFPT- 187
Query: 323 NLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P+MALTATA + R+DIL L + L SF RPN+RF++
Sbjct: 188 --------VPVMALTATADVTTRKDILNQLALPN-PYIHLDSFDRPNIRFTL 230
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 118/225 (52%), Gaps = 11/225 (4%)
Query: 476 YGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF 535
Y H DR R F N + L +++ ED IIY +R + +AKYL
Sbjct: 215 YIHLDSFDRPNIR-FTLAPKYNGEKQLLGYIKKKGEDS-GIIYCNSRWQVEKLAKYLAAS 272
Query: 536 GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEA 595
G+ AAY+A L V F ++ +++V+AT+AFG+GI+K NVR +IH+ P++LE+
Sbjct: 273 GINCAAYHAGLENEIRSLVQEGFTKDNIQIVIATVAFGLGINKPNVRYVIHFEPPRTLES 332
Query: 596 YYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYG-----MN 650
YYQE GRAGRDG A+ + + + + R SE Q R+ + R+ ++
Sbjct: 333 YYQEIGRAGRDGLNAEALFLVDDKDVAR-IKKRISEGDNPQ--RVNVEMQRFAAMDAFID 389
Query: 651 TSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
CR ++++ YF E ++ + C CD+C+D P + E +L
Sbjct: 390 AQTCRRQVVLNYFAE-YTEKGCGNCDICLDPPSQFDGTIEAQKVL 433
>gi|189462633|ref|ZP_03011418.1| hypothetical protein BACCOP_03325 [Bacteroides coprocola DSM 17136]
gi|189430794|gb|EDU99778.1| ATP-dependent DNA helicase RecQ [Bacteroides coprocola DSM 17136]
Length = 607
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 128/214 (59%), Gaps = 16/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG++ + Q+E ++ L D LVL TG GKS+C+Q+PALL +V+SPLIS
Sbjct: 6 LKSYFGYTQFRPLQEEIITQILHKKDTLVLMPTGGGKSICYQLPALLMEGTAIVVSPLIS 65
Query: 225 LMHDQCSKLSKHGVTACFLGSGQ---PDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S D + + +G ++Y+ PE RL+ + L
Sbjct: 66 LMKDQVESLQANGIIARALNSTNDETTDANIRFECRQGRVKLLYISPE---RLMGEVNFL 122
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+ I+LFAIDE HC+S+WGHDFRP+Y +L +LR+ F D+P++ALTATA
Sbjct: 123 MKDIRISLFAIDEAHCISQWGHDFRPEYTQLKILRQQFP---------DVPVVALTATAD 173
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
R+DI++ L M K + ++SF RPNL VK
Sbjct: 174 KITRQDIIRQLAM-KDPQIFISSFDRPNLSLDVK 206
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 123/217 (56%), Gaps = 14/217 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T +A+ L G+ A Y+A L + +F ++++VV ATIAFGMG
Sbjct: 231 IIYCMSRSKTEKVAEMLEEHGIATAVYHAGLSTAAREAAQDDFINDRVQVVCATIAFGMG 290
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ + + +L S+ + + +
Sbjct: 291 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSFGDI--VLLSKFAAESNQ 348
Query: 636 QAYRM--LSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEAN 693
Q M L+ +Y T CR +IL+ YFGE H+ C CDVC + PPE + +
Sbjct: 349 QEINMEKLNRMQQYA-ETDICRRRILLNYFGETMDHD-CGNCDVCRN-PPE----RFDGT 401
Query: 694 ILMQVI---AAYNEQSNSMDDDDGIYSGIKKQKFMDR 727
I++Q A +Q S++ I G Q+ ++R
Sbjct: 402 IIVQKALSGIARADQQVSINTLIDILRGAATQEIIER 438
>gi|188990600|ref|YP_001902610.1| DNA helicase [Xanthomonas campestris pv. campestris str. B100]
gi|167732360|emb|CAP50552.1| DNA helicase [Xanthomonas campestris pv. campestris]
Length = 600
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 132/219 (60%), Gaps = 19/219 (8%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ LL + FG+ + Q+ + A +D LVL TG GKSLC+Q+PALL + +V+S
Sbjct: 5 AHELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIGIVVS 64
Query: 221 PLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ L + GV A FL S + +VE+ L G ++YV PE RL+ P
Sbjct: 65 PLIALMQDQVEALRQLGVRAEFLNSTLDAENTQRVERALLSGDLDLLYVAPE---RLLTP 121
Query: 278 --LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L L SR IALFAIDE HCVS+WGHDFRP+YR+L+VL E + IP MA
Sbjct: 122 RFLSLLERSR-IALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HIPRMA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + +I + L + + FV +SF RPN+R++V
Sbjct: 172 LTATADPPTQREIAERLDLVEARHFV-SSFDRPNIRYTV 209
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A+ LC G A Y+A LP F ++ ATIAFGMG
Sbjct: 232 IVYAMSRRKVEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 292 IDKPDVRFVAHVDLPKSMEGYYQETGRAGRDGEPAEAWLCYGLGDVVLLKQMIEQGEAAE 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ K+ R D + CR ++L+ FGE + + C CD C+
Sbjct: 352 ERKRLERAKLDHLLGYCESMQCRRQVLLAGFGETYP-KPCGNCDNCL 397
>gi|30692489|ref|NP_174421.2| ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana]
gi|75334308|sp|Q9FT73.1|MED34_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit
34; AltName: Full=ATP-dependent DNA helicase Q-like 2;
AltName: Full=RecQ-like protein 2; Short=AtRecQ2;
Short=AtRecQl2
gi|11121445|emb|CAC14866.1| DNA Helicase [Arabidopsis thaliana]
gi|332193225|gb|AEE31346.1| ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana]
Length = 705
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 138/228 (60%), Gaps = 18/228 (7%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
+W+ + + + FG S + QKE ++A + D LV+ A G GKSLC+Q+PA+L G
Sbjct: 72 EWDSRADDVRFNVFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGGT 131
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFL--GSGQPDNKVEQKALRGM---YSIIYVCPET 270
+V+SPL+SL+ DQ L+ G++A L SG+ + K KAL I+YV PE
Sbjct: 132 TLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEK 191
Query: 271 VI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
V R + L++ + ++L +IDE HC S+WGHDFRPDY+ LS+L+ F
Sbjct: 192 VSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFP------- 244
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+P++ALTATAT +V+ D+++ LH+ K KFV +S RPNL +SV+
Sbjct: 245 --KVPMVALTATATQKVQNDLIEMLHIPKCVKFV-SSVNRPNLFYSVR 289
Score = 110 bits (276), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 10/166 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RKE IA L G+ A Y+A + + +VH + +NKL+V+V T+AFGMG
Sbjct: 317 IVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMG 376
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K +VR +IH+ +S+E YYQE+GRAGRDG ++C+L+ + +P R
Sbjct: 377 INKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVP------RQSSMVF 430
Query: 636 QAY---RMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVC 678
Y + L D RY + + CR +FGE S + +CD C
Sbjct: 431 YEYSGLQNLYDIVRYCQSKTKCRRSAFFRHFGEP-SQDCNGMCDNC 475
>gi|21232378|ref|NP_638295.1| DNA helicase [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66767490|ref|YP_242252.1| DNA helicase [Xanthomonas campestris pv. campestris str. 8004]
gi|384428940|ref|YP_005638300.1| ATP-dependent DNA helicase RecQ [Xanthomonas campestris pv. raphani
756C]
gi|21114154|gb|AAM42219.1| DNA helicase [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66572822|gb|AAY48232.1| DNA helicase [Xanthomonas campestris pv. campestris str. 8004]
gi|341938043|gb|AEL08182.1| ATP-dependent DNA helicase RecQ [Xanthomonas campestris pv. raphani
756C]
Length = 600
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 132/219 (60%), Gaps = 19/219 (8%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ LL + FG+ + Q+ + A +D LVL TG GKSLC+Q+PALL + +V+S
Sbjct: 5 AHELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIGIVVS 64
Query: 221 PLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ L + GV A FL S + +VE+ L G ++YV PE RL+ P
Sbjct: 65 PLIALMQDQVEALRQLGVRAEFLNSTLDAENTQRVERALLSGDLDLLYVAPE---RLLTP 121
Query: 278 --LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L L SR IALFAIDE HCVS+WGHDFRP+YR+L+VL E + IP MA
Sbjct: 122 RFLSLLERSR-IALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HIPRMA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + +I + L + + FV +SF RPN+R++V
Sbjct: 172 LTATADPPTQREIAERLDLVEARHFV-SSFDRPNIRYTV 209
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A+ LC G A Y+A LP F ++ ATIAFGMG
Sbjct: 232 IVYAMSRRKVEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 292 IDKPDVRFVAHVDLPKSMEGYYQETGRAGRDGEPAEAWLCYGLGDVVLLKQMIEQGEAAE 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ K+ R D + CR ++L+ FGE + + C CD C+
Sbjct: 352 ERKRLERAKLDHLLGYCESMQCRRQVLLAGFGETYP-KPCGNCDNCL 397
>gi|328778036|ref|XP_396209.4| PREDICTED: Bloom syndrome protein homolog, partial [Apis mellifera]
Length = 1179
Score = 169 bits (427), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 128/219 (58%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ ++ FG S + Q +A++A + DC +L TG GKSLC+Q+PALL V +VISPL
Sbjct: 605 IFRQKFGLYSFRPNQLQAINAAILGFDCFILMPTGGGKSLCYQLPALLLPGVTIVISPLK 664
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A + G D++ E ++YV PE + +
Sbjct: 665 SLILDQVQKLTSLDIPATHMSGGITDSQALGIYRELSKKDPALKLLYVTPEKISASPKFC 724
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L L R +A F IDE HCVS+WGHDFRPDY+RL+ LREN+ +P++
Sbjct: 725 NILSSLYNRRLLARFVIDEAHCVSQWGHDFRPDYKRLNCLRENYPK---------VPVIV 775
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATAT +VR DIL L ++ K+ ++SF RPNLR+S+
Sbjct: 776 LTATATPRVRSDILHQLRIT-TPKWFMSSFNRPNLRYSI 813
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 28/225 (12%)
Query: 501 ERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE 560
E + M++ ++ I+Y +RK+ A ++ +KA +Y+A L + + +
Sbjct: 824 EVIGMIKTKYKNDCGIVYCLSRKDCDDYAMHMRKNSIKALSYHAGLTDNNRSDIQGRWIS 883
Query: 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
+++VV ATIAFGMGIDK NVR +IH P+S+E YYQE+GRAGRDG ADC+L+ N +
Sbjct: 884 EEIKVVCATIAFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAGRDGENADCILFYNYTD 943
Query: 621 M-------------PTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDF 667
M PT++ + ++M+S C N + CR + YFGE F
Sbjct: 944 MHRIRKMIELDNSNPTIIKT-----HIDNLFKMVSFC----ENKTDCRRTQQLNYFGEIF 994
Query: 668 SHEKC-----QLCDVCVDGPP-EMKNLKEEANILMQVIAAYNEQS 706
E+C CD C M + ++A +M+ + N Q+
Sbjct: 995 DREQCIANKVTSCDNCRSKDTITMLDATDDAKQIMKAVRDLNNQT 1039
>gi|386389497|ref|ZP_10074311.1| ATP-dependent DNA helicase RecQ [Haemophilus paraphrohaemolyticus
HK411]
gi|385695267|gb|EIG25829.1| ATP-dependent DNA helicase RecQ [Haemophilus paraphrohaemolyticus
HK411]
Length = 601
Score = 169 bits (427), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 125/217 (57%), Gaps = 15/217 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
++L+ FG+ + Q+E + + LA D V+ TG GKSLC+Q+PAL + +VISP
Sbjct: 8 QTVLQNVFGYQQFRQGQQEVIESTLAGKDTFVIMTTGGGKSLCYQVPALCLEGITLVISP 67
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LISLM DQ +L +G+ A +L S Q VEQKAL G ++Y+ PE V + +
Sbjct: 68 LISLMKDQVDQLLTNGIEAAYLNSTQTLEEQRAVEQKALNGQLKLLYLSPEKV--MTQGF 125
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
I+ A+DE HCVS+WGHDFRP+Y L LR F +IPLMALTA
Sbjct: 126 YHFISHCKISFIAVDEAHCVSQWGHDFRPEYTLLGNLRNTFP---------NIPLMALTA 176
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
TA R DIL L ++ + L SF RPN+R++V+
Sbjct: 177 TADPTTRADILHHLRLNDPHTY-LGSFDRPNIRYTVQ 212
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 136/277 (49%), Gaps = 21/277 (7%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + I+Y +RK+ I + L + Y+A + Q V
Sbjct: 216 KPMEQLAKFIAGQKGKSGIVYCNSRKKVEEITEKLSARNISVMGYHAGMSVQQRETVQNA 275
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL--- 614
F + ++VVVATIAFGMGI+K NVR ++H+ P+S+E+YYQE GRAGRD + V+
Sbjct: 276 FQRDNIQVVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSQAVMFYD 335
Query: 615 ---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEK 671
YA L M LL SE + + +++ + CR +L+ YFGE E
Sbjct: 336 PADYAWLQKM--LLEEPESEQRDIKQHKL--QAIGAFAESQICRRLVLLNYFGES-RQEP 390
Query: 672 CQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLK 731
C+ CD+C+D PP + +A +M VI Q+ M + G+ QK + +
Sbjct: 391 CKNCDICLD-PPRKYDGLVDAQKVMSVIYR-TGQAFGMHYIISVLRGLNHQKIRQYGHDQ 448
Query: 732 MFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ V I + QSQ Y W + R + + G I++
Sbjct: 449 LSVYGIGKSQSQDY-------WVSVIRQLIHLGLIKQ 478
>gi|197927293|ref|NP_001128149.1| Werner syndrome ATP-dependent helicase [Pongo abelii]
gi|55726573|emb|CAH90053.1| hypothetical protein [Pongo abelii]
Length = 1486
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 126/212 (59%), Gaps = 12/212 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D + + ATG GKSLCFQ P + GK+ +VISPLI
Sbjct: 594 LKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLI 653
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L V ACFLGS Q +N + L G Y I+Y+ PE + LQ+L
Sbjct: 654 SLMEDQVLQLKMSNVPACFLGSAQSENVLTDIKL-GKYRIVYITPEYCSGNMGLLQQLEA 712
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GI L A+DE HC+S+WGHDFR +R+L L+ +P++ALTATA+
Sbjct: 713 DIGITLIAVDEAHCISEWGHDFRNSFRKLGSLKTALPM---------VPIVALTATASSS 763
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
++EDI++ L++ + + T F RPNL V+
Sbjct: 764 IQEDIVRCLNL-RNPQITCTGFDRPNLYLEVR 794
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S + +H F ++++ V+ATIA
Sbjct: 818 EGPTIIYCPSRKMTEQVTAELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIA 877
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ A+++ LL
Sbjct: 878 FGMGINKADIRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEI 937
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
R+E +M++ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 938 RNEKFRLYKLKMMAKMEKY-LHSSRCRRQIILSHF-EDKQVQKASLGIMGTEKCCDNC 993
>gi|218261590|ref|ZP_03476344.1| hypothetical protein PRABACTJOHN_02012 [Parabacteroides johnsonii
DSM 18315]
gi|423343392|ref|ZP_17321105.1| ATP-dependent DNA helicase RecQ [Parabacteroides johnsonii
CL02T12C29]
gi|218223945|gb|EEC96595.1| hypothetical protein PRABACTJOHN_02012 [Parabacteroides johnsonii
DSM 18315]
gi|409215467|gb|EKN08467.1| ATP-dependent DNA helicase RecQ [Parabacteroides johnsonii
CL02T12C29]
Length = 609
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 126/215 (58%), Gaps = 16/215 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LLK+ FG+++ + Q E + L D LVL TG GKS+CFQ+PA+ +V+SPLI
Sbjct: 7 LLKRFFGYTTFRPLQAEIIQRILQKEDSLVLMPTGGGKSICFQLPAIYMPGTAIVVSPLI 66
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LM DQ L +G+ A L S P+ ++V Q ++G ++Y+ PE + I L
Sbjct: 67 ALMKDQVEGLIANGIPASTLNSMMPEEERHRVRQLCIQGKVKLLYISPEGI---ISELHW 123
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L I+L AIDE HC+S WGHDFRP+Y +LSVL+ENF +P++ALTATA
Sbjct: 124 LLPRIDISLIAIDEAHCISHWGHDFRPEYTQLSVLKENFPK---------VPIVALTATA 174
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
R DIL L + F+ +SF RPNL +++
Sbjct: 175 DKITRTDILNQLKLRDPKTFI-SSFDRPNLSLTIR 208
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 110/184 (59%), Gaps = 11/184 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R T S+ + L + ++A AY+A L + + +F +++ VV AT+AFGMG
Sbjct: 233 IIYCMSRNSTESLVEELSEYSIRAVAYHAGLSPDKREKAQDDFINDRVNVVCATVAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSED--Q 633
IDK NVR +IHY P S+E YYQE GRAGRDG +D +L+ ++ + LL R +E+ Q
Sbjct: 293 IDKSNVRWVIHYNMPSSIENYYQEIGRAGRDGMKSDTLLFYSVGDI--LLLRRFAEESGQ 350
Query: 634 TKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEAN 693
+ + L+ RY CR +IL+ YFGE+ + + C CDVC PP+ + + +
Sbjct: 351 KDVSLQKLNRMRRY-CEADICRRRILLSYFGEE-TDKDCGNCDVC-KNPPQ----RFDGS 403
Query: 694 ILMQ 697
IL+Q
Sbjct: 404 ILVQ 407
>gi|74142907|dbj|BAE42489.1| unnamed protein product [Mus musculus]
Length = 862
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 124/211 (58%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + TGK+ +VISPLI
Sbjct: 504 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLI 563
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L V AC LGS Q N + L G Y +IY+ PE + LQ+L
Sbjct: 564 SLMEDQVLQLELSNVPACLLGSAQSKNILGDVKL-GKYRVIYITPEFCSGNLDLLQQLDS 622
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
S GI L A+DE HC+S+WGHDFR +R L L+ +P++AL+ATA+
Sbjct: 623 SIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPL---------VPVIALSATASSS 673
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+REDI+ L++ K + T F RPNL V
Sbjct: 674 IREDIISCLNL-KDPQITCTGFDRPNLYLEV 703
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 69/103 (66%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S+ + VH F ++++ VVAT+A
Sbjct: 729 EGPTIIYCPSRKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVA 788
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL 614
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C L
Sbjct: 789 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHL 831
>gi|150004558|ref|YP_001299302.1| ATP-dependent DNA helicase [Bacteroides vulgatus ATCC 8482]
gi|294776076|ref|ZP_06741571.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus PC510]
gi|423312434|ref|ZP_17290371.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus CL09T03C04]
gi|149932982|gb|ABR39680.1| putative ATP-dependent DNA helicase [Bacteroides vulgatus ATCC
8482]
gi|294450068|gb|EFG18573.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus PC510]
gi|392688918|gb|EIY82202.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus CL09T03C04]
Length = 605
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 128/214 (59%), Gaps = 16/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q++ + LA D LVL TG GKS+C+Q+PALL +V+SPLIS
Sbjct: 5 LKNYFGYDSFRPLQQDIIQNILAQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + ++ L+G ++Y+ PE RL+ L
Sbjct: 65 LMKDQVESLQANGIAARALNSSNNETENINLRRECLQGKIKLLYISPE---RLLIETNFL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+ I+LFAIDE HC+S+WGHDFRP+Y +L VLR F +P++ALTATA
Sbjct: 122 LKDIQISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPK---------VPIVALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
R+DI++ L + K K ++SF RPNL VK
Sbjct: 173 KITRKDIVQQLAL-KDPKIFISSFDRPNLSLEVK 205
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 133/252 (52%), Gaps = 16/252 (6%)
Query: 480 PHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539
P+ + R +++ D + E + E ++ IIY +R +T ++A L G++A
Sbjct: 198 PNLSLEVKRGYQQKDKMRTILEFI----EKHKNECGIIYCMSRSKTENVAAMLMKQGIRA 253
Query: 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599
Y+A L + +F ++++VV ATIAFGMGIDK NVR +IHY P+S+E++YQE
Sbjct: 254 TVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMGIDKSNVRWVIHYNLPKSIESFYQE 313
Query: 600 AGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
GRAGRDG +D +L+ +L + L Q + L +Y + CR +IL
Sbjct: 314 IGRAGRDGMESDTLLFYSLGDLVMLSKFATESSQQEINLEKLHRMQQYA-ESDICRRRIL 372
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQ----VIAAYNEQSNSMDDDDGI 715
+ YFGE H+ C CDVC + PPE + + I++Q IA N+Q + D I
Sbjct: 373 LNYFGETMDHD-CGNCDVCRN-PPE----RFDGTIIVQKALSAIARTNQQIGTHMLID-I 425
Query: 716 YSGIKKQKFMDR 727
G Q+ +D+
Sbjct: 426 LKGSANQELIDK 437
>gi|124002830|ref|ZP_01687682.1| ATP-dependent DNA helicase RecQ [Microscilla marina ATCC 23134]
gi|123992058|gb|EAY31445.1| ATP-dependent DNA helicase RecQ [Microscilla marina ATCC 23134]
Length = 712
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 131/215 (60%), Gaps = 19/215 (8%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+++FG+ + QK+ + LA +D LVL TG GKSLC+Q+PAL+ + +V+SPLI+
Sbjct: 10 LQQYFGYKQFRPLQKDIIDQVLAGNDALVLMPTGGGKSLCYQVPALMMEGIAIVVSPLIA 69
Query: 225 LMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L ++ + A F S Q +++E++ + G ++YV PE ++ I+ LQ
Sbjct: 70 LMQDQVEALQRNDIAAAFYNSTQTSSEQSEIERQCMDGKIKLLYVSPEKLLSGTFIEFLQ 129
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
RL I LFAIDE HC+S WGHDFRP+Y +L +L++ F + +P++ALTAT
Sbjct: 130 RLQ----INLFAIDEAHCISSWGHDFRPEYAQLKMLKKVFPS---------VPVVALTAT 176
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
A R DIL L++ + F L SF R N+R V
Sbjct: 177 ADKTTRNDILNQLNLQQPETF-LASFDRENIRLHV 210
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 102/185 (55%), Gaps = 10/185 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK T IA+ L G A Y+A + ++ V F ++ ++ ATIAFGMG
Sbjct: 233 IIYCLSRKSTEQIAQKLKDAGFSADYYHAKMDSNRRAAVQQSFLKDDTHIICATIAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSED 632
IDK NVR +IHY P+++E YYQE GRAGRDG +D +L Y ++ + + + +E
Sbjct: 293 IDKPNVRFVIHYNMPKNVEGYYQEIGRAGRDGLKSDAILFYSYGDVKILREFIHNIDNEG 352
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ L ++ + CR +IL+ YF E+F + C CDVC + PP+ K +
Sbjct: 353 FKALQFAKLERMLQFA-DADICRRRILLNYFNENFQQD-CGNCDVCRN-PPQ----KFDG 405
Query: 693 NILMQ 697
IL Q
Sbjct: 406 TILAQ 410
>gi|187930372|ref|YP_001900859.1| ATP-dependent DNA helicase RecQ [Ralstonia pickettii 12J]
gi|187727262|gb|ACD28427.1| ATP-dependent DNA helicase RecQ [Ralstonia pickettii 12J]
Length = 637
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 138/228 (60%), Gaps = 23/228 (10%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK- 214
D +++L FG+S+ + Q E ++ DCLVL TG GKSLC+QIPAL+ +
Sbjct: 17 DTAAATHAVLHDVFGYSAFRGPQAEIVAHVADGGDCLVLMPTGGGKSLCYQIPALVRHRR 76
Query: 215 ---VVVVISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCP 268
+V+SPLI+LM DQ + L + GV A +L S G +VE+ G ++YV P
Sbjct: 77 GQGAGIVVSPLIALMQDQVAALEEAGVRAAYLNSALTGAEAAQVERDLAAGRLDLVYVAP 136
Query: 269 ETVIRLIKP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
E RL+ P L+ L SR I LFAIDE HCVS+WGHDFRP+Y +LSVL E F
Sbjct: 137 E---RLMTPRFLELLERSR-IGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP------ 186
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P +ALTATA R++I++ L ++ G++ L+SF RPN+R+++
Sbjct: 187 ---HVPRIALTATADAVTRDEIIERLALT-GSRVFLSSFDRPNIRYTI 230
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 117/242 (48%), Gaps = 35/242 (14%)
Query: 489 SFERTDLLNKPAERLSMLQEPLE-------DGLT----IIYVPTRKETLSIAKYLCGFGV 537
SF+R ++ E+ S Q+ L DG T I+Y +RK+ A++L G+
Sbjct: 220 SFDRPNIRYTIVEKDSARQQLLRFIRAEHMDGDTCDAGIVYCLSRKKVEETAQWLAEQGI 279
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
+A Y+A + R F + + V+VATIAFGMGIDK +VR + H P+SLE YY
Sbjct: 280 RALPYHAGMDSDVRARHQAIFRKEEGVVMVATIAFGMGIDKPDVRFVAHLDLPKSLEGYY 339
Query: 598 QEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQ-----------TKQAYRMLSDCFR 646
QE GRAGRDG A+ + L+ ++ RR D+ T + +L C
Sbjct: 340 QETGRAGRDGMPANAWMAYGLAD---VVQQRRMIDESDADDVHKRVSTAKLEALLGLC-- 394
Query: 647 YGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQS 706
+ CR L+ YFGE S + C CD C+ PP+ + EA M + AY Q
Sbjct: 395 ---EAATCRRVALLAYFGE--SSQPCGNCDTCLT-PPQTWDATREAQ--MALSCAYRVQQ 446
Query: 707 NS 708
S
Sbjct: 447 AS 448
>gi|409202724|ref|ZP_11230927.1| ATP-dependent DNA helicase [Pseudoalteromonas flavipulchra JG1]
Length = 607
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 133/222 (59%), Gaps = 25/222 (11%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+S+LK FG+S+ ++ Q + + + LA D LVL TG GKSLC+Q+PA+L V +VISP
Sbjct: 16 HSVLKDVFGYSTFRDGQLDIIQSSLAGQDTLVLLPTGGGKSLCYQVPAVLFAGVTIVISP 75
Query: 222 LISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LISLM DQ ++L G+ A ++ + + +G ++YV PE K L
Sbjct: 76 LISLMQDQVAQLKAQGIAAEYINNSVAWEQQRDTYDALFQGRLKLLYVAPE------KAL 129
Query: 279 QRLAESR----GIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
QR R I+LFAIDE HCVS WGHDFRP Y RL LR++F + +P+M
Sbjct: 130 QRDFIERISNCNISLFAIDEAHCVSHWGHDFRPHYFRLKELRQHFPS---------VPMM 180
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSVK 375
ALTATA + R+DI++ L M F+ T SF RPN+R++++
Sbjct: 181 ALTATADLATRKDIVQQLGMQ--APFIYTGSFDRPNIRYTIE 220
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 102/179 (56%), Gaps = 17/179 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK IA+ L G AA Y+A L Q + V F + +++VVAT+AFGMG
Sbjct: 242 IIYCGSRKRVDDIAEKLIDAGFNAAGYHAGLDNDQRQFVQNRFARDDIQIVVATVAFGMG 301
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL------LPS-- 627
I+K NVR ++HY P+S+EAYYQE GRAGRD A+ V+Y + + +P + +P
Sbjct: 302 INKPNVRFVVHYDIPKSVEAYYQETGRAGRDSLAAEAVMYFDPADIPRVRRFFEDIPDEQ 361
Query: 628 -RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEM 685
R+ E+Q QA ++ CR +IL+ YF E + E C CD+C++ P +
Sbjct: 362 RRKVEEQRFQAMSSFAEA-------QTCRRQILLNYFSE-YQREACGNCDICLNPPKQF 412
>gi|345494123|ref|XP_001606008.2| PREDICTED: Bloom syndrome protein homolog [Nasonia vitripennis]
Length = 1223
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 128/220 (58%), Gaps = 18/220 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S ++ FG + + Q +A++A L DC +L TG GKSLC+Q+PALLT + +V+SPL
Sbjct: 474 SFFRQKFGLFNFRPNQLQAINAALLGFDCFILMPTGGGKSLCYQLPALLTPGITIVVSPL 533
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETVI---RL 274
SL+ DQ KL + A + Q D++ E + ++YV PE + +L
Sbjct: 534 KSLILDQTQKLISLDIPAAHMSGDQTDSQTDAIYREMSKKDPVLKLLYVTPEKLSASQKL 593
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
L L E + F IDE HCVS+WGHDFRPDY++L VLR + ++P M
Sbjct: 594 CNALTALYERGLLGRFVIDEAHCVSQWGHDFRPDYKKLQVLRVKYP---------NVPTM 644
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATAT +VR DIL L M + K+ ++SF RPNLR+SV
Sbjct: 645 ALTATATPRVRTDILHQLGM-QSPKWFMSSFNRPNLRYSV 683
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 118/221 (53%), Gaps = 11/221 (4%)
Query: 497 NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHT 556
N E + +++ +D I+Y +R + + A+ + G+KA Y+A L Q +
Sbjct: 690 NASDEVIGLIKAKFKDDCGIVYCLSRNDCDTYAEQMKINGIKAMGYHAGLSDKQRSDIQG 749
Query: 557 EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616
+ +++VV ATIAFGMGIDK NVR +IH P+S+E YYQE+GRAGRD A+C+L+
Sbjct: 750 RWISEQIKVVCATIAFGMGIDKPNVRFVIHASLPKSIEGYYQESGRAGRDSENAECILFY 809
Query: 617 NLSSM---PTLLPSRRSEDQTKQAYRM--LSDCFRYGMNTSCCRAKILVEYFGEDFSHEK 671
N + M ++ + ++T Q M L + NT+ CR + + YFGE F E
Sbjct: 810 NYADMYRHRKMIEMDVASNKTAQKTHMDNLFKMVTFCENTTDCRRALQLNYFGELFDREI 869
Query: 672 C-----QLCDVCVD-GPPEMKNLKEEANILMQVIAAYNEQS 706
C CD C + G + ++ E+A L+ ++ + + +
Sbjct: 870 CIANKQTACDNCRNQGQFNVLDVTEDAKSLVTLVRDFTKNN 910
>gi|325923899|ref|ZP_08185499.1| ATP-dependent DNA helicase RecQ [Xanthomonas gardneri ATCC 19865]
gi|325545635|gb|EGD16889.1| ATP-dependent DNA helicase RecQ [Xanthomonas gardneri ATCC 19865]
Length = 600
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 132/219 (60%), Gaps = 19/219 (8%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ LL + FG+ + Q+ + A +D LVL TG GKSLC+Q+PALL + +V+S
Sbjct: 5 AHELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIGIVVS 64
Query: 221 PLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ L + GV A FL S + +VE+ L G ++YV PE RL+ P
Sbjct: 65 PLIALMQDQVDALRQLGVRAEFLNSTLDAENTQRVERALLSGDLDLLYVAPE---RLLTP 121
Query: 278 --LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L L SR IALFAIDE HCVS+WGHDFRP+YR+L+VL E + IP MA
Sbjct: 122 RFLSLLERSR-IALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HIPRMA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + +I + L + + FV +SF RPN+R++V
Sbjct: 172 LTATADPPTQREIAERLDLVEARHFV-SSFDRPNIRYTV 209
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 84/167 (50%), Gaps = 4/167 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A+ LC G A Y+A LP F ++ ATIAFGMG
Sbjct: 232 IVYAMSRRKVEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMTATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSED 632
IDK +VR + H P+SLE YYQE GRAGRDG A+ L L M L + + +
Sbjct: 292 IDKPDVRFVAHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDMVLLKQMIEQGEAAE 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ K+ R D + CR ++L+ FGE + + C CD C+
Sbjct: 352 ERKRLERAKLDHLLGYCESMQCRRQVLLAGFGETYP-KPCGNCDNCL 397
>gi|212556507|gb|ACJ28961.1| ATP-dependent DNA helicase RecQ [Shewanella piezotolerans WP3]
Length = 607
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 135/220 (61%), Gaps = 20/220 (9%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
++++ L+ FG+ + ++ Q+E + A DCLV+ TG GKSLC+Q+PAL + VV+
Sbjct: 12 QLSASLQSVFGYRTFRDGQREVIEQICAGQDCLVIMPTGGGKSLCYQLPALQLPGLTVVV 71
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ L + GV+A +L S QP K+ Q+ G ++YV PE RL++
Sbjct: 72 SPLISLMKDQVDSLIQTGVSAAYLNSSQPREESLKILQQMRYGELKLLYVSPE---RLLQ 128
Query: 277 P--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ RL E I+LFAIDE HC+S+WGHDFRP+Y L LR+ F +P+M
Sbjct: 129 ASFIDRLHEL-NISLFAIDEAHCISQWGHDFRPEYAALGRLRQQFPL---------VPIM 178
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA R DI + L + + +LTSF RPN+R++V
Sbjct: 179 ALTATADNATRVDICERLTIEPFS--LLTSFDRPNIRYTV 216
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 136/253 (53%), Gaps = 13/253 (5%)
Query: 489 SFERTDLLNKPAERLSMLQE-----PLEDGLT-IIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ AE+L+ + ++G + I+Y +R+ +A+ L G +A AY
Sbjct: 206 SFDRPNIRYTVAEKLNAANQLRQFIDAQNGNSGIVYCSSRRRVDEVAERLRMQGHQAEAY 265
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A + + V F +++L++VVAT+AFGMGI+K NVR ++HY P+S+EAYYQE GR
Sbjct: 266 HAGKTQEERADVQDRFLKDQLDIVVATVAFGMGINKSNVRYVVHYDIPKSVEAYYQETGR 325
Query: 603 AGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG ++ ++ A++ + L+ Q + + L+ + CR ++L
Sbjct: 326 AGRDGLDSEALMLFDPADIGRVRHLIEQSEPGPQQQVEFHKLNTMAAFA-EAQTCRRQVL 384
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGI 719
+ YF E + E C CD+C+D PP+ N ++A ++ I Q ++ + G
Sbjct: 385 LHYFDES-ALEPCGNCDICLD-PPKKYNGIQDAQKVLSCIYRLG-QRFGVNHLIEVLRGS 441
Query: 720 KKQKFMDRPNLKM 732
K MDR + K+
Sbjct: 442 KAATVMDRGHNKL 454
>gi|74227079|dbj|BAE38334.1| unnamed protein product [Mus musculus]
Length = 789
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 124/211 (58%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + TGK+ +VISPLI
Sbjct: 504 LKTNFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLI 563
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L V AC LGS Q N + L G Y +IY+ PE + LQ+L
Sbjct: 564 SLMEDQVLQLELSNVPACLLGSAQSKNILGDVKL-GKYRVIYITPEFCSGNLDLLQKLDS 622
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
S GI L A+DE HC+S+WGHDFR +R L L+ +P++AL+ATA+
Sbjct: 623 SIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPL---------VPVIALSATASSS 673
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+REDI+ L++ K + T F RPNL V
Sbjct: 674 IREDIISCLNL-KDPQITCTGFDRPNLYLEV 703
>gi|392544476|ref|ZP_10291613.1| ATP-dependent DNA helicase [Pseudoalteromonas piscicida JCM 20779]
Length = 607
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 133/222 (59%), Gaps = 25/222 (11%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+S+LK FG+S+ ++ Q + + + LA D LVL TG GKSLC+Q+PA+L V +VISP
Sbjct: 16 HSVLKDVFGYSTFRDGQLDIIQSSLAGQDTLVLLPTGGGKSLCYQVPAVLFAGVTIVISP 75
Query: 222 LISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LISLM DQ ++L G+ A ++ + + +G ++YV PE K L
Sbjct: 76 LISLMQDQVAQLKAQGIAAEYINNSVAWEQQKDTYDALFQGRLKLLYVAPE------KAL 129
Query: 279 QRLAESR----GIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
QR R I+LFAIDE HCVS WGHDFRP Y RL LR++F + +P+M
Sbjct: 130 QRDFIDRISNCNISLFAIDEAHCVSHWGHDFRPHYFRLKELRQHFPS---------VPMM 180
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSVK 375
ALTATA + R+DI++ L M F+ T SF RPN+R++++
Sbjct: 181 ALTATADLATRKDIVQQLGMQ--APFIYTGSFDRPNIRYTIE 220
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 102/179 (56%), Gaps = 17/179 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK IA+ L G AA Y+A L Q + V F + +++VVAT+AFGMG
Sbjct: 242 IIYCGSRKRVDDIAEKLIDAGFNAAGYHAGLDNDQRQFVQNRFARDDIQIVVATVAFGMG 301
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL------LPS-- 627
I+K NVR ++HY P+S+EAYYQE GRAGRD A+ V+Y + + +P + +P
Sbjct: 302 INKPNVRFVVHYDIPKSVEAYYQETGRAGRDSLAAEAVMYFDPADIPRVRRFFEDIPDEQ 361
Query: 628 -RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEM 685
R+ E+Q QA ++ CR +IL+ YF E + E C CD+C++ P +
Sbjct: 362 RRKVEEQRFQAMSSFAEA-------QTCRRQILLNYFSE-YQREACGNCDICLNPPKQF 412
>gi|7595900|gb|AAF64490.1|AF241636_1 WRN protein [Mus musculus]
Length = 1401
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 124/211 (58%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + TGK+ +VISPLI
Sbjct: 504 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLI 563
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L V AC LGS Q N + L G Y +IY+ PE + LQ+L
Sbjct: 564 SLMEDQVLQLELSNVPACLLGSAQSKNILGDVKL-GKYRVIYITPEFCSGNLDLLQKLDS 622
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
S GI L A+DE HC+S+WGHDFR +R L L+ +P++AL+ATA+
Sbjct: 623 SIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPL---------VPVIALSATASSS 673
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+REDI+ L++ K + T F RPNL V
Sbjct: 674 IREDIISCLNL-KDPQITCTGFDRPNLYLEV 703
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 101/178 (56%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S+ + VH F ++++ VVAT+A
Sbjct: 729 EGPTIIYCPSRKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVA 788
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C L A+ ++ LL
Sbjct: 789 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLIEI 848
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
E +M+ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 849 HDEKFRLYKLKMMVKMEKY-LHSSQCRRRIILSHF-EDKCLQKASLDIMGTEKCCDNC 904
>gi|302799268|ref|XP_002981393.1| hypothetical protein SELMODRAFT_10144 [Selaginella moellendorffii]
gi|300150933|gb|EFJ17581.1| hypothetical protein SELMODRAFT_10144 [Selaginella moellendorffii]
Length = 703
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 140/227 (61%), Gaps = 20/227 (8%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W + + + +++FG+ S + Q E ++A ++ HD VL TG GKSL +Q+PA+ V
Sbjct: 20 WSMDLKANNRRYFGNKSFRPNQHEIINATMSGHDVFVLMPTGGGKSLTYQLPAICCPGVT 79
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGM------YSIIYVCPET 270
+V+ PL+SL+ DQ LS+ + A L S + + +++ L+ + Y ++YV PE
Sbjct: 80 LVVCPLVSLIMDQIMHLSQASIRAEHLSSNL-EYEEQRQILQQLNFDHCEYRLLYVTPEK 138
Query: 271 VIR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
+ R L++ L+ L R +A IDE HCVS+WGHDFRPDY+ L +L++ F
Sbjct: 139 IARSDNLLRNLENLHRRRLLARIVIDEAHCVSQWGHDFRPDYQNLGILKQKFS------- 191
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
D+PLMALTATAT++V+ED++++L + K F T F RPNLR+SV
Sbjct: 192 --DVPLMALTATATMRVKEDVVQALGLCKCIIFRQT-FNRPNLRYSV 235
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 20/188 (10%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVA 568
P E G IIY ++ + + + L G K Y+AS+ + RV + ++++ ++ A
Sbjct: 255 PRESG--IIYCFSKMDCERVCEQLRKTGHKIGFYHASMDPQERNRVQRMWSKDEINIICA 312
Query: 569 TIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--LP 626
T+AFGMGI+K +VR +IH+ P+S+E Y+QE+GRAGRD A C+LY + S + L
Sbjct: 313 TVAFGMGINKPDVRFVIHHSIPKSIEGYHQESGRAGRDNLPASCILYYSYSDYVRVKHLL 372
Query: 627 SRRSEDQT---------------KQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEK 671
S+ + DQT K + L Y N CR + + +FGE F
Sbjct: 373 SQGAVDQTSTGRSWNNSDTANQMKTNFDNLQRMGAYCENEVDCRRSLQLGHFGEKFDSAS 432
Query: 672 CQ-LCDVC 678
C+ CD C
Sbjct: 433 CKSTCDNC 440
>gi|387771794|ref|ZP_10127951.1| ATP-dependent DNA helicase RecQ [Haemophilus parahaemolyticus
HK385]
gi|386908179|gb|EIJ72877.1| ATP-dependent DNA helicase RecQ [Haemophilus parahaemolyticus
HK385]
Length = 601
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 127/217 (58%), Gaps = 15/217 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
++L+ FG+ + Q+E + A LA D LV+ TG GKSLC+Q+P+L + +VISP
Sbjct: 8 QTILQNVFGYQQFRQGQQEVIEATLAGKDTLVIMTTGGGKSLCYQVPSLCLEGITLVISP 67
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LISLM DQ +L +G+ A +L S Q +EQKAL G ++Y+ PE V + +
Sbjct: 68 LISLMKDQVDQLLTNGIEAGYLNSSQTLEEQRVIEQKALSGQLKLLYLSPEKV--MTQGF 125
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
I+ A+DE HCVS+WGHDFRP+Y L LR F +IPLMALTA
Sbjct: 126 YHFISHCKISFIAVDEAHCVSQWGHDFRPEYTLLGNLRNTFP---------NIPLMALTA 176
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
TA R DIL L +++ + L SF RPN+R++V+
Sbjct: 177 TADPTTRADILLHLRLNEPHTY-LGSFDRPNIRYTVQ 212
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 137/277 (49%), Gaps = 21/277 (7%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + I+Y +RK+ I + L + Y+A + Q V
Sbjct: 216 KPMEQLAKFIAGQKGKSGIVYCNSRKKVEEITEKLSARNISVMGYHAGMSVQQRETVQNA 275
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL--- 614
F + ++VVVAT+AFGMGI+K NVR ++H+ P+S+E+YYQE GRAGRD + V+
Sbjct: 276 FQRDNIQVVVATVAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSQAVMFYD 335
Query: 615 ---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEK 671
YA L M LL SE + + +++ + CR +L+ YFGE E
Sbjct: 336 PADYAWLQKM--LLEEPESEQRDIKQHKL--QAVGAFAESQTCRRLVLLNYFGES-RREP 390
Query: 672 CQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLK 731
C+ CD+C+D PP + +A +M VI Q+ M + G+ QK + +
Sbjct: 391 CKNCDICLD-PPRKYDGLIDAQKVMSVIYR-TGQTFGMHHVIAVLRGLNHQKIRQYGHDQ 448
Query: 732 MFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ V I +EQSQ Y W + R + + G I++
Sbjct: 449 LSVYGIGKEQSQDY-------WVSVIRQLIHLGLIKQ 478
>gi|254425231|ref|ZP_05038949.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 7335]
gi|196192720|gb|EDX87684.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 7335]
Length = 738
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 101/256 (39%), Positives = 144/256 (56%), Gaps = 24/256 (9%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
+ E + S LK FGH + Q+ + L + D LV+ TG GKSLC+Q+PALL
Sbjct: 3 NQEPALESALKHFFGHDQFRFEQRSIVEQVLKNKDVLVIMPTGGGKSLCYQLPALLRPGT 62
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI 272
+VISPLI+LM DQ L +G+ A FL S +V ++ L G I+Y+ PE
Sbjct: 63 TIVISPLIALMQDQVVALKDNGIEATFLNSTLSFEEVRSRQKDLLMGKIKILYIAPE--- 119
Query: 273 RLIKP-----LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
RL L++L++ GI+ FAIDE HCVS+WGHDFRP+YR+L +K L
Sbjct: 120 RLFTSSFHDFLKQLSQKVGISTFAIDEAHCVSEWGHDFRPEYRQLF---------QIKQL 170
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKK 387
IP++ALTATAT +VR DI++ L ++ T ++ +SF R NL + V SR Y++
Sbjct: 171 YPQIPIIALTATATQRVRTDIVQQLRLNDPTVYI-SSFNRQNLYYEVIQ---KSRKPYQQ 226
Query: 388 DFCQLIDIYTKKKKTG 403
++ K+K G
Sbjct: 227 LLAKIQQHQGKEKGAG 242
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 135/263 (51%), Gaps = 13/263 (4%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
E G IIY +RK ++ L G+ A Y+A L +Q T+F + ++++VAT+
Sbjct: 238 EKGAGIIYCLSRKHVDEVSNNLTKDGISALPYHAGLTNTQRENNQTKFIRDDVQIIVATV 297
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPS 627
AFGMGI+K +VR +IHY P++LE+YYQE+GRAGRD A C + + ++ ++ L+
Sbjct: 298 AFGMGINKPDVRFVIHYDLPRNLESYYQESGRAGRDSEAASCTILFGWGDVHTVRYLIGQ 357
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKN 687
+ + + A + L+ Y + CR ++ + YFGE F C CD C+ P +++
Sbjct: 358 KADPGEQRIAQQQLNQIISYA-ESPICRRQVQLNYFGEQFI-PPCNNCDNCL-SPVPIED 414
Query: 688 LKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLAT 747
EA + + +Q M+ + G K++ + + ++ I ++ A
Sbjct: 415 WTIEAQKFLSCVYRC-DQRFGMNHIVDVLRGSNKKRIFELGHDRLTTYSI---GKERTAD 470
Query: 748 DLLWWRGLARIMENKGYIREGDD 770
+ WR L R M +GY+ E D
Sbjct: 471 E---WRMLCRAMIYQGYLEETTD 490
>gi|114320031|ref|YP_741714.1| ATP-dependent DNA helicase RecQ [Alkalilimnicola ehrlichii MLHE-1]
gi|114226425|gb|ABI56224.1| ATP-dependent DNA helicase RecQ [Alkalilimnicola ehrlichii MLHE-1]
Length = 611
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 132/222 (59%), Gaps = 17/222 (7%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
+LL + FG + Q E + D LVL TG GKSLC+Q+PALL V +V+SPL
Sbjct: 18 TLLHRVFGFRGFRGQQGEIVRHVSDGGDALVLMPTGGGKSLCYQLPALLRPGVAIVVSPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKP-L 278
I+LM DQ LS+ GV A L S + +EQ RG ++Y+ PE RL+ P +
Sbjct: 78 IALMQDQVRALSQAGVRAASLNSTCGLEELRTIEQDMRRGELDLVYMAPE---RLMTPRM 134
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
Q L + IALFAIDE HCVS+WGHDFRP+Y +LSVL E F +P +ALTA
Sbjct: 135 QELLQQVPIALFAIDEAHCVSQWGHDFRPEYLQLSVLHERFPR---------VPRIALTA 185
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380
TA + R++I++ L + + +F L+SF RPN+R+ V + +
Sbjct: 186 TADARTRQEIVRRLGLDEARQF-LSSFDRPNIRYRVTPRRNA 226
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 97/181 (53%), Gaps = 5/181 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ +A++L G A Y+A L + +R F E + +VVATIAFGMG
Sbjct: 244 IVYCLSRRKVDDMAEWLNSKGRPALPYHAGLDAATRQRNQQRFIEEEGLIVVATIAFGMG 303
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSED 632
IDK +VR + H P+S+EAYYQE GRAGRDG A + L + TL L S + +
Sbjct: 304 IDKPDVRFVAHLDLPRSMEAYYQETGRAGRDGLPATAWMTYGLQDVITLRQMLDSSEAGE 363
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
K+ R + + CR + L+ YFGED E C CD C++ P E + E A
Sbjct: 364 AHKRVERHRLEAMLAFCEHTACRRQSLLGYFGEDLP-EPCGNCDTCLE-PVETWDATEAA 421
Query: 693 N 693
Sbjct: 422 R 422
>gi|419801388|ref|ZP_14326616.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK262]
gi|419845355|ref|ZP_14368628.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK2019]
gi|385193739|gb|EIF41095.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK262]
gi|386415831|gb|EIJ30351.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK2019]
Length = 618
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 133/224 (59%), Gaps = 15/224 (6%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
+D + L+ FG+ S + Q+E + A L+ D LV+ ATG+GKSLC+QIPAL
Sbjct: 9 TDLKTTALHTLRSVFGYQSFRKGQEEVIHAALSGQDALVVMATGNGKSLCYQIPALCFPG 68
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQ-PD--NKVEQKALRGMYSIIYVCPETV 271
+ +VISPLISLM DQ +L +G+ A FL S Q P+ +VE K + G ++YV PE V
Sbjct: 69 LTLVISPLISLMKDQVDQLQANGIEADFLNSSQTPEQQQQVENKLISGQLKLLYVSPEKV 128
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
+ +L I+ AIDE HC+S+WGHDFRP+Y +L L+ F +
Sbjct: 129 --MTNSFFQLISYAQISFIAIDEAHCISQWGHDFRPEYTQLGGLKAAFP---------NA 177
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
P+MALTATA R+DIL L + K++ SF RPN+R++++
Sbjct: 178 PIMALTATADYATRQDILTHLKLDNPHKYI-GSFDRPNIRYTLE 220
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 147/280 (52%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + I+Y +R + IA+ L GV AAAY+A + + RV +
Sbjct: 224 KPMEQLTRFVLAQKGKSGIVYCNSRSKVERIAEILRNKGVSAAAYHAGMETALRERVQQD 283
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 284 FQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 343
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + + +L P R+ E +A ++ + CR +L+ YFGE
Sbjct: 344 PADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAE-------SQTCRRLVLLNYFGEH-R 395
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
CQ CD+C+D P + L + ++ + Q + + G+ QK ++R
Sbjct: 396 QTPCQNCDICLDPPKKYDGLIDAQKVMSTIYRV--GQCFGVQYVIAVLRGMHNQKIVERQ 453
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ K+ V I +++S+++ W+ + R + + G+I++
Sbjct: 454 HDKLSVYGIGKDKSKEH-------WQSVIRQLIHLGFIQQ 486
>gi|2130973|dbj|BAA20269.1| WRN typeI [Mus musculus]
gi|2130975|dbj|BAA20270.1| WRN typeII [Mus musculus]
Length = 1401
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 124/211 (58%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + TGK+ +VISPLI
Sbjct: 504 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLI 563
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L V AC LGS Q N + L G Y +IY+ PE + LQ+L
Sbjct: 564 SLMEDQVLQLELSNVPACLLGSAQSKNILGDVKL-GKYRVIYITPEFCSGNLDLLQKLDS 622
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
S GI L A+DE HC+S+WGHDFR +R L L+ +P++AL+ATA+
Sbjct: 623 SIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPL---------VPVIALSATASSS 673
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+REDI+ L++ K + T F RPNL V
Sbjct: 674 IREDIISCLNL-KDPQITCTGFDRPNLYLEV 703
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 101/178 (56%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S+ + VH F ++++ VVAT+A
Sbjct: 729 EGPTIIYCPSRKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVA 788
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C L A+ ++ LL
Sbjct: 789 FGMGINKADIRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLIEI 848
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
E +M+ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 849 HDEKFRLYKLKMMVKMEKY-LHSSQCRRRIILSHF-EDKCLQKASLDIMGTEKCCDNC 904
>gi|73668704|ref|YP_304719.1| ATP-dependent DNA helicase RecQ [Methanosarcina barkeri str.
Fusaro]
gi|72395866|gb|AAZ70139.1| ATP-dependent DNA helicase RecQ [Methanosarcina barkeri str.
Fusaro]
Length = 881
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 135/228 (59%), Gaps = 15/228 (6%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
++ S L ++FG++S + Q+E + L D VL TG GKS+C+Q+PALL V VV
Sbjct: 6 ARMYSALHQYFGYTSFRPLQEEIIKDVLERKDVFVLMPTGGGKSMCYQLPALLMEGVTVV 65
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLI 275
+SPLISLM DQ L +G+ A + S Q + V+ L ++YV PE RL+
Sbjct: 66 VSPLISLMKDQVDGLEANGIAAACMNSAQSARENRDVKTAFLENRLKVLYVAPE---RLM 122
Query: 276 KPLQRLAESRG-IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
P +G ++L AIDE HC+S+WGHDFRP+YR+L +LR+ K+ DIP++
Sbjct: 123 MPGTLAFLKKGKVSLLAIDEAHCISEWGHDFRPEYRKLKLLRDP------KTGFPDIPII 176
Query: 335 ALTATATIQVREDILK--SLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380
ALTATAT +VREDI+ +LH+ + SF R NL + V+ K +
Sbjct: 177 ALTATATERVREDIISQLNLHLPPEKGPYVASFNRKNLYYEVRPKKET 224
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 136/263 (51%), Gaps = 33/263 (12%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R ++ K L G +A Y+A L ++ R F ++ +E++VATIAFGMG
Sbjct: 241 IIYCQSRNSVEALTKKLNLAGFRALPYHAGLSDTERNRNQEMFIKDDVEIIVATIAFGMG 300
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--LPSRRSEDQ 633
IDK NVR +IHY P++LE+YYQE GR GRDG +C+L+ + + S+++ ++
Sbjct: 301 IDKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFISQKTNEK 360
Query: 634 TK-----QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
K Q +M++ C + CR + L+EYFGE+ S E C CD C+ P + +
Sbjct: 361 EKDISLVQLRQMVAYC-----EGNKCRRQTLMEYFGEELS-EPCGNCDCCLT-PKDTFDG 413
Query: 689 KEEANILMQVIAAYNEQ--SNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLA 746
E A + + N++ +N + D + +G K +K R N R + K
Sbjct: 414 TEAAKKFITCVQELNQRFGTNYVID---VLTGSKNKKI--RHN--------RHERLKSHG 460
Query: 747 TDLLW----WRGLARIMENKGYI 765
+ L + W+ LA M N G +
Sbjct: 461 SGLEFTKEQWKSLASEMINTGLL 483
>gi|388565315|ref|ZP_10151808.1| ATP-dependent DNA helicase RecQ [Hydrogenophaga sp. PBC]
gi|388267430|gb|EIK92927.1| ATP-dependent DNA helicase RecQ [Hydrogenophaga sp. PBC]
Length = 630
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 137/230 (59%), Gaps = 25/230 (10%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVI 219
+L+ FG+ + + Q + ++ D LVL TG GKSLC+Q+PA++ + V VV+
Sbjct: 17 VLQSVFGYEAFRGPQAQIVTHVCEGGDALVLMPTGGGKSLCYQVPAIVRAQGGRGVAVVV 76
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LMHDQ L++ GV+A +L S + ++E + RG +++YV PE RL+
Sbjct: 77 SPLIALMHDQVGALTEAGVSAAYLNSSLSLEDAQRIELQLRRGDLTLLYVAPE---RLLT 133
Query: 277 P-----LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
P L+ L E ++LFAIDE HCVS+WGHDFRP+YR L+VL E F +
Sbjct: 134 PRCQAMLESLHEQGRLSLFAIDEAHCVSQWGHDFRPEYRELAVLPERF---------VGV 184
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
P +ALTATA R DI++ L + F+ +SF RPN+R+ + K ++
Sbjct: 185 PRIALTATADALTRADIVERLQLQDARTFI-SSFDRPNIRYQLVEKKDAT 233
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 99/195 (50%), Gaps = 6/195 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
++Y +R+ +A+ L G KA Y+A L + + F + ++VATIAFGMG
Sbjct: 254 VVYCQSRRRVEEVAQMLQQAGFKALPYHAGLDAAVRQNHQDRFLREEGLIMVATIAFGMG 313
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPSRRSED 632
IDK +VR + H P+++E YYQE GRAGRDG A+ + L + ++ + D
Sbjct: 314 IDKPDVRFVAHLDMPKNIEGYYQETGRAGRDGEPANAWMAYGLQDVVNQRRMIDDSPAPD 373
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ KQ R D S CR L+ YFGE+ + C CD C++ PPE+ + E A
Sbjct: 374 EFKQVLRGKLDALLALAEASDCRRVRLLRYFGEE--SQPCGNCDNCLN-PPELFDATEPA 430
Query: 693 NILMQVIAAYNEQSN 707
L+ I + S
Sbjct: 431 RKLLSCIYRVQQASG 445
>gi|328707887|ref|XP_001947908.2| PREDICTED: Bloom syndrome protein homolog [Acyrthosiphon pisum]
Length = 1128
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 145/249 (58%), Gaps = 32/249 (12%)
Query: 140 SDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGS 199
S +L+++ +++ WE+ ++ KK FG + Q EA++A L H+C +L TG
Sbjct: 367 STNLSMTEFTKIDYSFSWELL--AVFKKTFGLRHFRPNQFEAINAALLGHNCFILMPTGG 424
Query: 200 GKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTAC-FLGSGQPDNKVEQKALR 258
GKSLC+Q+PA++ + VVISPL SL+ DQ KL + A L S PD +
Sbjct: 425 GKSLCYQLPAVILKGITVVISPLKSLIIDQTQKLKSLDIPAAHLLSSITPDEE------N 478
Query: 259 GMYS----------IIYVCPETVI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF 305
+YS ++YV PE V +LI+ L L +A IDE HCVS+WGHDF
Sbjct: 479 TIYSELWGADPGLKLLYVTPEKVAASNKLIQVLNNLHCRNLLARIVIDEAHCVSQWGHDF 538
Query: 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSF 365
RPDY+RL V ++N+ ++P+MALTATAT +VR+D+L L++ + TK+ ++SF
Sbjct: 539 RPDYKRLGVFKQNYQ---------NVPIMALTATATQRVRKDVLHQLNIEE-TKWFVSSF 588
Query: 366 FRPNLRFSV 374
RPNL + V
Sbjct: 589 NRPNLVYEV 597
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 95/173 (54%), Gaps = 10/173 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY T+KE + A ++ G G+KA +Y+A L + V ++ NK VV ATIAFGMG
Sbjct: 623 IIYCMTKKECDNTAIFMSGEGIKAVSYHAGLTDKKRNDVQMQWTSNKSNVVCATIAFGMG 682
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL-----LPSRRS 630
IDK +VR +IHY PQS+E +YQE+GRAGRDG +A C++Y N S M + + +
Sbjct: 683 IDKPDVRYVIHYSLPQSIEGFYQESGRAGRDGDVAYCLIYYNYSDMHRIKKLIEIGGGAT 742
Query: 631 EDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-----QLCDVC 678
+ K + L Y N CR + + YF E F +C CD C
Sbjct: 743 YETKKVRFHNLCRIVSYCENKMDCRRAMQLNYFDEQFDKAQCIANEKTTCDNC 795
>gi|397169212|ref|ZP_10492647.1| ATP-dependent DNA helicase [Alishewanella aestuarii B11]
gi|396089292|gb|EJI86867.1| ATP-dependent DNA helicase [Alishewanella aestuarii B11]
Length = 605
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 135/218 (61%), Gaps = 19/218 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++LK+ FG+SS ++ Q+E +SA L DC VL TG GKSLC+Q+PAL V +V+SPL
Sbjct: 7 AVLKQSFGYSSWRSGQQEIISAVLQGRDCFVLLPTGGGKSLCYQLPALQLPGVTLVVSPL 66
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ--KALR-GMYSIIYVCPETVIRLIKP-- 277
+SLM DQ L +G+ A ++ S V LR G ++YV PE RL++P
Sbjct: 67 MSLMKDQVDSLRANGIAAAYVNSSLSREAVLDVLNQLRYGELKLLYVAPE---RLLQPSF 123
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L+RL E G++LFAIDE HC+S+WGHDFRPDY LS L++ F +P +ALT
Sbjct: 124 LERLQEV-GVSLFAIDEAHCISQWGHDFRPDYMALSQLKQRFPG---------VPFIALT 173
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
ATA ++DIL+ L +S SF RPN+R++V+
Sbjct: 174 ATADPATQQDILQQLGLSN-PYIHRGSFDRPNIRYTVQ 210
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 105/191 (54%), Gaps = 5/191 (2%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
+P E+L + E+ IIY +R++ + L G K AAY+A ++ +RV
Sbjct: 214 RPLEQLLAYLKQQENQSGIIYCSSRRKVDELTAQLQERGYKVAAYHAGHDSTERQRVQDA 273
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + + ++VAT+AFGMG+DK N+R ++H+ P+++EAYYQE GRAGRDG A+ VL
Sbjct: 274 FKRDDINLIVATVAFGMGVDKPNIRFVVHFELPRTIEAYYQETGRAGRDGVAAEAVLLFD 333
Query: 616 -ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL 674
A++ M L + + + + ++ + CR +L+ YFGE + C
Sbjct: 334 PADIGRMKRWLEAEENPGRAEVVWQRFLSMAAFA-EAQTCRRLVLLNYFGEA-RQQACGN 391
Query: 675 CDVCVDGPPEM 685
CD+C++ P +
Sbjct: 392 CDICLNPPQQF 402
>gi|386812206|ref|ZP_10099431.1| DNA helicase RecQ [planctomycete KSU-1]
gi|386404476|dbj|GAB62312.1| DNA helicase RecQ [planctomycete KSU-1]
Length = 714
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 137/241 (56%), Gaps = 27/241 (11%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+K+FG++S Q++ + LA D VL TG GKSLC+Q+PALL V +V+SPLI+
Sbjct: 5 LQKYFGYTSFYPLQEDIIKEVLAQRDAFVLMPTGGGKSLCYQLPALLFSGVTIVVSPLIA 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIRLIKP-LQR 280
LM DQ L +G+ A F+ S ++++ Q L I+Y+ PE RL P +
Sbjct: 65 LMKDQVDGLLANGIPAIFINSSLSYSEIDAKRQSLLNNEIKILYIAPE---RLFMPEFLQ 121
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
+ I+LFAIDE HC+S+WGHDFRP+YR+L +L+E F +P+MALTATA
Sbjct: 122 FLQGLKISLFAIDESHCISEWGHDFRPEYRQLEILKEKFPK---------VPVMALTATA 172
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK------HSKTSSRASYKKD----FC 390
T V++DI+ L +S F SF R NL + +K H S KKD +C
Sbjct: 173 TPAVQKDIILQLKLSDCRIFK-ASFNRKNLYYQIKPKDNPYHQILHYLKSRKKDSGIIYC 231
Query: 391 Q 391
Q
Sbjct: 232 Q 232
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 132/264 (50%), Gaps = 22/264 (8%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK S+ L G + Y+A LP F + +E++VATIAFGMG
Sbjct: 228 IIYCQSRKTVESLTTSLQAEGYRVLPYHAGLPAEVRTENQERFIHDDVEIIVATIAFGMG 287
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSED 632
IDK +VR +IHY P+S+E YYQE GRAGRDG +DC+L YA+ + + + E+
Sbjct: 288 IDKPDVRYVIHYDLPKSIEGYYQETGRAGRDGLKSDCILLFSYADKFKIEYFIHQKIDEN 347
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ AY+ L Y + CR K+L++YFGE F C CDVC++ P E + A
Sbjct: 348 EKLIAYKQLRHLTNY-CEGNICRRKLLLDYFGEKFDEPNCNNCDVCLE-PKERFDGTIAA 405
Query: 693 NILMQVIAAYNEQ--SNSMDDDDGIYSGIKKQKFMD--RPNLKMF-VSKIREQSQKYLAT 747
++ I E+ N + D + G K QK + +K + V K +SQ
Sbjct: 406 QKILSCIYRVGERFGVNYIID---VLQGSKNQKVLQNRHDTIKTYGVGKEYTKSQ----- 457
Query: 748 DLLWWRGLARIMENKGYIREGDDR 771
W+ R + GYI+ D+
Sbjct: 458 ----WQAFTRELIQLGYIKLDGDK 477
>gi|428173190|gb|EKX42094.1| BLM RecQ DNA helicase family member, partial [Guillardia theta
CCMP2712]
Length = 412
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 143/259 (55%), Gaps = 27/259 (10%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
DW K+ + K F + S + Q+E ++ L+ HDC VL TG GKSLC+Q+PAL++ V
Sbjct: 4 DWTEKLRKINKHVFRNPSFRKHQEEIINTILSGHDCFVLMPTGGGKSLCYQLPALMSPGV 63
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ--KALRGMY-----SIIYVCP 268
+VISPL+SLMHDQ L+ + A + + P +++E+ LRG+ +IY+ P
Sbjct: 64 TIVISPLVSLMHDQVYNLNLLRIGAYCISANTPMSELEEMYSCLRGVKEGINCQLIYITP 123
Query: 269 ETVI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLK 325
E RL +QR ++ ++ IDE HCVS+WGHDFRPDY+ L L+
Sbjct: 124 EKFAHSQRLQNEMQRSFQNGKLSRIIIDEAHCVSEWGHDFRPDYKMLGALKSKLPG---- 179
Query: 326 SLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASY 385
+ +MALTATAT +VR DI L +++ F + SF RPNLR+ V R
Sbjct: 180 -----VQIMALTATATPRVRRDIRNILQINEAYTF-MQSFNRPNLRYEV-------RKKE 226
Query: 386 KKDFCQLIDIYTKKKKTGE 404
KK + I + K+ GE
Sbjct: 227 KKKSAENIATFIKENYPGE 245
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 98/174 (56%), Gaps = 8/174 (4%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVA 568
P E G IIY ++ +A + F +KA Y+A L + ++ +K V+VA
Sbjct: 243 PGETG--IIYCLSKNRCEEMAAKMQEFKIKALPYHAGLDDQTRKFNQDQWSNDKTHVIVA 300
Query: 569 TIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSR 628
TIAFGMGI+K +VR +IH P+S+E YYQE+GRAGRDG ++ C+LY + S L+ +
Sbjct: 301 TIAFGMGINKPDVRFVIHESLPKSMEGYYQESGRAGRDGKISHCILYYSYSD--KLVHDK 358
Query: 629 RSE---DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-QLCDVC 678
++ D+ + L+ Y CR ++ + YFGE+F +KC + CD C
Sbjct: 359 MAQDDFDKKENVRNNLNKMVEYCETQFTCRRQLQLHYFGENFGPDKCGKTCDNC 412
>gi|170763502|ref|NP_035851.3| Werner syndrome ATP-dependent helicase homolog [Mus musculus]
gi|170763504|ref|NP_001116294.1| Werner syndrome ATP-dependent helicase homolog [Mus musculus]
gi|342187359|sp|O09053.3|WRN_MOUSE RecName: Full=Werner syndrome ATP-dependent helicase homolog;
AltName: Full=Exonuclease WRN
gi|3885838|gb|AAC78077.1| Wrn protein [Mus musculus]
gi|29748014|gb|AAH50921.1| Wrn protein [Mus musculus]
gi|38173728|gb|AAH60700.1| Wrn protein [Mus musculus]
Length = 1401
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 124/211 (58%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + TGK+ +VISPLI
Sbjct: 504 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLI 563
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L V AC LGS Q N + L G Y +IY+ PE + LQ+L
Sbjct: 564 SLMEDQVLQLELSNVPACLLGSAQSKNILGDVKL-GKYRVIYITPEFCSGNLDLLQQLDS 622
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
S GI L A+DE HC+S+WGHDFR +R L L+ +P++AL+ATA+
Sbjct: 623 SIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPL---------VPVIALSATASSS 673
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+REDI+ L++ K + T F RPNL V
Sbjct: 674 IREDIISCLNL-KDPQITCTGFDRPNLYLEV 703
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 101/178 (56%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S+ + VH F ++++ VVAT+A
Sbjct: 729 EGPTIIYCPSRKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVA 788
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C L A+ ++ LL
Sbjct: 789 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLIEI 848
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
E +M+ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 849 HDEKFRLYKLKMMVKMEKY-LHSSQCRRRIILSHF-EDKCLQKASLDIMGTEKCCDNC 904
>gi|350417151|ref|XP_003491281.1| PREDICTED: Bloom syndrome protein homolog [Bombus impatiens]
Length = 1344
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 131/224 (58%), Gaps = 28/224 (12%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ ++ FG S + Q +A++A + DC VL TG GKSLC+Q+PALL V +VISPL
Sbjct: 631 VFRQKFGLYSFRPNQLQAINAAILGFDCFVLMPTGGGKSLCYQLPALLLPGVTIVISPLK 690
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMY----------SIIYVCPETVI- 272
SL+ DQ KL+ + A + G D++ G+Y ++YV PE +
Sbjct: 691 SLILDQVQKLTSLDIPAAHMSGGITDSQAS-----GIYRELSKKEPSLKLLYVTPEKISA 745
Query: 273 --RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
+ L L E +A F IDE HCVS+WGHDFRPDY++L+ LREN+
Sbjct: 746 SQKFCNLLTTLYERGLLARFVIDEAHCVSQWGHDFRPDYKKLNRLRENYPK--------- 796
Query: 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P++ALTATAT +VR DIL L +S K+ ++SF RPNLR+S+
Sbjct: 797 VPVIALTATATPRVRTDILHQLGLS-VPKWFMSSFNRPNLRYSI 839
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 116/227 (51%), Gaps = 28/227 (12%)
Query: 501 ERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE 560
E ++ML+ ++ I+Y +RK+ A + G+KA +Y+A S + +
Sbjct: 850 EVIAMLKMKYKNECGIVYCLSRKDCDDYAMQMRKNGIKALSYHAGHTDSSRTDIQGRWIS 909
Query: 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
+++VV ATIAFGMGIDK NVR +IH P+S+E YYQE+GRAGRDG ADC+L+ N +
Sbjct: 910 EEIKVVCATIAFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAGRDGENADCILFYNYAD 969
Query: 621 M-------------PTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDF 667
M PT+ ++ Y+M+S C N + CR + YFGE F
Sbjct: 970 MHRIRKMIELDNPNPTV-----TKTHIDNLYKMVSFC----ENKTDCRRAQQLHYFGEMF 1020
Query: 668 SHEKC-----QLCDVC-VDGPPEMKNLKEEANILMQVIAAYNEQSNS 708
++C CD C M + +EA +++ + N+ NS
Sbjct: 1021 DRQQCIANKATSCDNCRCKDDFTMLDTTDEAKHILRAVRDINQSRNS 1067
>gi|410619883|ref|ZP_11330774.1| ATP-dependent DNA helicase RecQ [Glaciecola polaris LMG 21857]
gi|410160661|dbj|GAC34912.1| ATP-dependent DNA helicase RecQ [Glaciecola polaris LMG 21857]
Length = 623
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 135/231 (58%), Gaps = 21/231 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK FG+ ++ Q+E + L D LVL TG GKSLC+QIPAL+ G + +V+SPLI
Sbjct: 36 VLKTVFGYDEFRDGQQEVIEQILHGQDVLVLMPTGGGKSLCYQIPALVLGGLTIVVSPLI 95
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGM----YSIIYVCPETVIRLIKPLQ 279
+LM DQ L GV+A ++ S ++ RGM Y +IYV PE +++ +Q
Sbjct: 96 ALMKDQVDALVASGVSAAYINSNLSSEEM-LNVYRGMQDGRYKLIYVAPERLMQF-DFMQ 153
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
RL S IALFA+DE HCVS WGHDFR +YR+L L++ F A +P++ LTAT
Sbjct: 154 RL-HSLNIALFAVDEAHCVSHWGHDFRKEYRQLGQLKQQFPA---------VPVIGLTAT 203
Query: 340 ATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFS--VKHSKTSSRASYKK 387
A I R DIL+ L + + FV SF RPN+R++ K+ T Y K
Sbjct: 204 ADITTRSDILQQLALQE--PFVFKGSFDRPNIRYNQLFKYKATDQVIQYVK 252
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+DG IIY +RK+ ++ L G+ A Y+A L ++ +F ++ ++++VAT+
Sbjct: 254 QDGSGIIYCNSRKKVDDLSMALARQGINCAGYHAGLEGPIRDKIQRDFIQDNIDIIVATV 313
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL----- 625
AFGMGI+K NVR ++H+ P+S+EAYYQE GRAGRDG A+ +L + +
Sbjct: 314 AFGMGINKSNVRFVVHFDLPRSVEAYYQETGRAGRDGMPAEALLLFDEKDAARIRQWIGM 373
Query: 626 ---PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
P+R + K A CR ++L+ YF E +S + C CD+C+D P
Sbjct: 374 GDNPARLDIELQKFAAMEAF------AEAQTCRRQVLLNYFSE-YSAKDCGNCDICLD-P 425
Query: 683 PEMKNLKEEANILMQVI 699
P+ + K A +++ I
Sbjct: 426 PKRFDGKVSAQMVLSCI 442
>gi|328725542|ref|XP_001947924.2| PREDICTED: Bloom syndrome protein homolog [Acyrthosiphon pisum]
Length = 1185
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 133/224 (59%), Gaps = 26/224 (11%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++ + FG + + Q E ++A L HDC VL TG GKSLC+Q+PA+++ V +VISPL
Sbjct: 444 TVFRSTFGLHNFRPNQLETINAALLGHDCFVLMPTGGGKSLCYQLPAVISKGVTLVISPL 503
Query: 223 ISLMHDQCSKLSKHGV-TACFLGSGQPDNK--------VEQKALRGMYSIIYVCPETV-- 271
SL+ DQ KL + TA LG+ +P+ + + + L+ ++YV PE +
Sbjct: 504 KSLVIDQTEKLKSLDIPTAHLLGNMKPEEENIIFTKLCMSEPGLK----MLYVTPEKIAA 559
Query: 272 -IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
++L + L L +A IDE HCVS WGHDFRPDY+RL R+ + D
Sbjct: 560 SMKLGQILNNLHCRGKLARLVIDEAHCVSHWGHDFRPDYKRLGEFRKKYP---------D 610
Query: 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P+MALTATAT +VRED+L L +S GTK L+SF RPNL + V
Sbjct: 611 VPIMALTATATTRVREDVLHQLQIS-GTKLFLSSFNRPNLLYKV 653
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 115/211 (54%), Gaps = 23/211 (10%)
Query: 489 SFERTDLLNKP---------AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539
SF R +LL K AE ++++E ++ I+Y +RKE + A Y+C G+KA
Sbjct: 643 SFNRPNLLYKVVPKKGKSAMAEIANLIKEKYKNQSGIVYCLSRKECDNTATYMCNEGIKA 702
Query: 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599
+Y+A L + V ++ NK+ +V ATIAFGMGIDK +VR + HY P+S+E YYQE
Sbjct: 703 ISYHAGLSDPKRNDVQMKWITNKVNLVCATIAFGMGIDKPDVRYVFHYSLPKSIEGYYQE 762
Query: 600 AGRAGRDGHLADCVLYANLSSMPTLLPSRRSED----QTKQAYRMLSDCFR---YGMNTS 652
+GRAGRDG + C LY + M + +D ++K+ + + + FR Y N +
Sbjct: 763 SGRAGRDGKTSHCFLYYSYQDMHRIRKLIELDDSGNHESKKVH--MQNLFRIVSYCENKA 820
Query: 653 CCRAKILVEYFGEDFSHEKC-----QLCDVC 678
CR + + YFGE F KC CD C
Sbjct: 821 DCRRTLQLNYFGETFDDNKCISNKETACDNC 851
>gi|118489987|gb|ABK96790.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 617
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 128/215 (59%), Gaps = 19/215 (8%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG+ + + Q +A A +A DC VL TG GKSLC+Q+PA L V VVISPL+SL+ D
Sbjct: 211 FGNKTFRPLQHQACKATVAKQDCFVLMPTGGGKSLCYQLPATLKPGVTVVISPLLSLIQD 270
Query: 229 QCSKLS-KHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETVI---RLIKPLQ 279
Q L+ K G+ A FL S Q + E + + ++YV PE + ++ L+
Sbjct: 271 QIITLNLKFGIRATFLNSQQTSAQAAAILQELRKDKPSCKLLYVTPERIAGNPAFLEILK 330
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L +A F +DE HCVS+WGHDFRPDY+RL L++NF +P+MALTAT
Sbjct: 331 CLHLKGQLAGFVVDEAHCVSQWGHDFRPDYKRLGCLKQNFPV---------VPVMALTAT 381
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
AT VREDILK+L + G + TSF RPNL++ V
Sbjct: 382 ATHSVREDILKTLRIP-GALVLETSFDRPNLKYEV 415
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 114/213 (53%), Gaps = 26/213 (12%)
Query: 487 DRSFERTDLLNKPAERLSMLQEPLEDGLT----IIYVPTRKETLSIAKYL---CGFGVKA 539
DR + +++ K E L L + L D I+Y ++ E + ++K+L C +KA
Sbjct: 407 DRPNLKYEVIGKTKESLKQLGDLLRDRFKNQCGIVYCLSKNECVEVSKFLNEKCK--IKA 464
Query: 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599
Y+A L Q V ++H ++ +V ATIAFGMGIDK +VR +IH +S+E+YYQE
Sbjct: 465 VYYHAGLGARQRVDVQRKWHTGEVHIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQE 524
Query: 600 AGRAGRDGHLADCV-LYA--NLSSMPTLLPSRRS------EDQTKQAYRMLSDCFRYGMN 650
+GRAGRD H A C+ LY + S + +L S + + QA +M S C
Sbjct: 525 SGRAGRDSHPATCIALYQKKDFSRVVCMLRSGQGYKRESFKPAMAQAQKMKSYCELKAE- 583
Query: 651 TSCCRAKILVEYFGEDFSHEKCQL----CDVCV 679
CR ++L+E+FGE F + C+ CD C+
Sbjct: 584 ---CRRQVLLEHFGESFDQKACKFGSHPCDNCL 613
>gi|435850506|ref|YP_007312092.1| ATP-dependent DNA helicase RecQ [Methanomethylovorans hollandica
DSM 15978]
gi|433661136|gb|AGB48562.1| ATP-dependent DNA helicase RecQ [Methanomethylovorans hollandica
DSM 15978]
Length = 692
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 139/240 (57%), Gaps = 25/240 (10%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+K+FG+ + + Q++ + +A D VL TG GKS+C+Q+PALL V VV+SPLIS
Sbjct: 5 LRKYFGYDTFRPLQEDIIKDVIAGKDVFVLMPTGGGKSICYQLPALLMNGVTVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +GV A +L S + N+++Q+ + ++YV PE RL
Sbjct: 65 LMKDQVDTLRANGVEAAYLNSTLSYKESNQIKQELENNIIKLLYVAPE---RLTLSSTLT 121
Query: 282 AESR-GIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
R + LFAIDE HC+S+WGHDFRP+YR+LS+L+ + IP++ALTATA
Sbjct: 122 LLDRIKVNLFAIDESHCISEWGHDFRPEYRKLSILKRKYP---------HIPIIALTATA 172
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKK 400
T +VR+D + LH+ +V SF R NL + V+ K + + Q+++ K+K
Sbjct: 173 TPKVRKDTISQLHIEDCNTYV-ASFNRKNLLYQVRPKKET--------YEQIVEFLRKRK 223
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 148/287 (51%), Gaps = 18/287 (6%)
Query: 489 SFERTDLLNKPAERLSMLQEPLE------DGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF R +LL + + ++ +E D IIY +RK + L G A Y
Sbjct: 195 SFNRKNLLYQVRPKKETYEQIVEFLRKRKDKSGIIYCQSRKTVDELTGKLRKSGFNALPY 254
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L + R F ++ E++VATIAFGMGIDK NVR +IHY P++LE+YYQE GR
Sbjct: 255 HAGLSDAARSRNQDIFIKDDAEIIVATIAFGMGIDKPNVRFVIHYDLPRNLESYYQETGR 314
Query: 603 AGRDGHLADCVLYANLSSMPTL--LPSRRSEDQTKQAYRM-LSDCFRYGMNTSCCRAKIL 659
GRDG +C+L+ + + + ++ + ++A R+ L + Y +T CR K+L
Sbjct: 315 GGRDGLECECILFFSRGDKYKIDYFIDQIAKSEEREAARLKLKEVMDYCQST-ICRRKML 373
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGI 719
+ YFGE+ E C CDVC+ P ++ + EEA +L++ + + Q + I +G
Sbjct: 374 LRYFGEELQEENCGGCDVCLQ-PVKITDATEEAKLLIRCVKEVS-QRYGITHVTEILTGS 431
Query: 720 KKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIR 766
+K ++ + ++ + YL D W +AR + ++G +R
Sbjct: 432 NSKKITEKGHHRLSSYG----TGTYLPKD--RWADIARELAHQGILR 472
>gi|343083870|ref|YP_004773165.1| ATP-dependent DNA helicase RecQ [Cyclobacterium marinum DSM 745]
gi|342352404|gb|AEL24934.1| ATP-dependent DNA helicase RecQ [Cyclobacterium marinum DSM 745]
Length = 709
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 127/214 (59%), Gaps = 13/214 (6%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LKK +G+ S + Q+ + + DC+ L TG+GKS+C+Q+PA++ + +VISPLI
Sbjct: 6 VLKKFYGYDSFRGQQESVIRQVIEKKDCIALMPTGAGKSVCYQVPAMVLPGLTLVISPLI 65
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQ---PDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LM DQ L++ G+ A FL S V +A++G ++YV PE + PL
Sbjct: 66 ALMKDQVDALNEIGIPAAFLNSTMDISEQRYVSDQAMKGGIKLLYVAPERLFSGTHPLVN 125
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
+ ++L A+DE HCVS+WGHDFRP+Y +L LR+ F D P +ALTATA
Sbjct: 126 ALKEMNLSLVAVDEAHCVSQWGHDFRPEYLKLGALRKAFP---------DTPFLALTATA 176
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
Q R+DI LH++K F+ +SF RPN+ + V
Sbjct: 177 DKQTRKDISARLHLNKPEWFI-SSFDRPNITYRV 209
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 117/228 (51%), Gaps = 12/228 (5%)
Query: 474 EFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLC 533
E++ S R T R R+D K + L P + G I+Y +RK + A L
Sbjct: 194 EWFISSFDRPNITYRVTLRSDGFGKLVDFLQ--HRPNDAG--IVYCLSRKSVENTAAKLN 249
Query: 534 GFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSL 593
G A Y+A L K + +F +++++++VATIAFGMGIDK NVR ++H PQ++
Sbjct: 250 ANGFSALPYHAGLSKENRQENQEKFIKDEVKIIVATIAFGMGIDKSNVRFVVHTNMPQNI 309
Query: 594 EAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLS--DCFRYGMNT 651
E+YYQE GRAGRDG + +L+ +L TL S D + M + D T
Sbjct: 310 ESYYQETGRAGRDGLPGEALLFYSLGDSITLKRMIESADNEEYVRHMKAKMDTMVAFCQT 369
Query: 652 SCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
CR K L+ YFGE +S + C CDVC KN K + I Q++
Sbjct: 370 KSCRRKYLLGYFGEKYSQD-CGNCDVCFQ-----KNNKSDMTIFSQML 411
>gi|324504342|gb|ADY41874.1| Werner syndrome ATP-dependent helicase 1 [Ascaris suum]
Length = 916
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 132/214 (61%), Gaps = 15/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L K+FGH S + Q E + L D LV+ +TG GKS+C+Q+P+LL + +++SPLIS
Sbjct: 48 LNKYFGHKSFRPLQWEIIRNALERKDQLVVMSTGYGKSICYQMPSLLKDNLTLIVSPLIS 107
Query: 225 LMHDQCSKLSKHGVTA-CFLGSGQPD--NKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM+DQ + S +G+ A C G Q + N+V + L G ++YV PE + + ++++
Sbjct: 108 LMNDQVTNASANGIAASCITGETQREDRNEVFEDCLNGRLRLLYVTPEFGLNNPELIRKI 167
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
S I L AIDE HCVS+WGH+FR DYR LS +R+ G D+PLMALTATAT
Sbjct: 168 --SLRIGLLAIDEAHCVSQWGHEFRSDYRCLSSIRDIIG---------DVPLMALTATAT 216
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+V++DI+K+LHM + TS R NL V+
Sbjct: 217 PEVKKDIIKNLHMRQAVTLC-TSLDRSNLYLEVR 249
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 129/274 (47%), Gaps = 32/274 (11%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G TIIY PTR + K L G GVK A Y+A L + H F ++K+ +VAT+AF
Sbjct: 274 GPTIIYCPTRASVEDVNKVLSGMGVKCAMYHAGLSSKARSKAHENFVKDKITTIVATVAF 333
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT----LLPSR 628
GMGIDK +VR IIH+G P+ +E+YYQE GRAGRDG + C+++ + + + L+
Sbjct: 334 GMGIDKPDVRNIIHFGAPKGIESYYQEIGRAGRDGFPSKCIVFYSDNEIAINRNRLIRDG 393
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDF--SHEKCQLCDVCVDGPPEMK 686
+ +D K + + + CR +++ +F S + CD+C DG E +
Sbjct: 394 KLKDPYKAHAIEMQRHMEKFLTGNTCRRFLMLSHFDASLKSSTPRAGCCDIC-DGNIESE 452
Query: 687 NLKE----------EANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSK 736
N EA +L++ I D+ + K +D K V
Sbjct: 453 NNPNKRTLTVNYGFEAELLLRTI------------DEVFHGSTGLGKVIDFLKGKANVYA 500
Query: 737 IREQSQKYLA---TDLLWWRGLARIMENKGYIRE 767
+++ Y A +W+ L RI+ GY E
Sbjct: 501 TKQKHALYGAGAKKTEAFWKELGRILRLSGYFYE 534
>gi|423278476|ref|ZP_17257390.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 610]
gi|404586486|gb|EKA91059.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 610]
Length = 601
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 127/215 (59%), Gaps = 16/215 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + ++ D LVL TG GKS+C+Q+PALL +VISPLIS
Sbjct: 5 LKTYFGYDSFRPLQEEIIRNLMSKRDALVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S +++ + + + G ++Y+ PE +L+ L
Sbjct: 65 LMKDQVESLCANGIPAGALNSSNDESENANLRRACISGKLKLLYISPE---KLLSEADYL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
I+LFA+DE HC+S+WGHDFRP+Y R+ LR F +IP++ALTATA
Sbjct: 122 LRDMTISLFAVDEAHCISQWGHDFRPEYARMGFLRTQFP---------NIPMIALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
REDI++ L + + F+ +SF RPNL SVK
Sbjct: 173 KITREDIVRQLQLKQPEIFI-SSFDRPNLSLSVKR 206
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 107/191 (56%), Gaps = 3/191 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L Q +F +++EVV ATIAFGMG
Sbjct: 230 IIYCMSRSKTETVAQMLQKHGIRCGVYHAGLSARQRDEAQDDFINDRIEVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L + L +Q
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTILFYSLGDLILLTKFATESNQQN 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
L+ +Y CR +IL+ YFGE + E C CDVC + PPE +
Sbjct: 350 INLEKLNRMQQYA-EADICRRRILLSYFGET-ATEDCGNCDVCRN-PPERFDGTVIVQKA 406
Query: 696 MQVIAAYNEQS 706
+ IA N+Q+
Sbjct: 407 LSAIARTNQQA 417
>gi|407261615|ref|XP_003946318.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Mus
musculus]
Length = 1434
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 124/211 (58%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + TGK+ +VISPLI
Sbjct: 571 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLI 630
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L V AC LGS Q N + L G Y +IY+ PE + LQ+L
Sbjct: 631 SLMEDQVLQLELSNVPACLLGSAQSKNILGDVKL-GKYRVIYITPEFCSGNLDLLQKLDS 689
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
S GI L A+DE HC+S+WGHDFR +R L L+ +P++AL+ATA+
Sbjct: 690 SIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPL---------VPVIALSATASSS 740
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+REDI+ L++ K + T F RPNL V
Sbjct: 741 IREDIISCLNL-KDPQITCTGFDRPNLYLEV 770
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 101/178 (56%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S+ + VH F ++++ VVAT+A
Sbjct: 796 EGPTIIYCPSRKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVA 855
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C L A+ ++ LL
Sbjct: 856 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLIEI 915
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
E +M+ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 916 HDEKFRLYKLKMMVKMEKY-LHSSQCRRRIILSHF-EDKCLQKASLDIMGTEKCCDNC 971
>gi|148703462|gb|EDL35409.1| Werner syndrome homolog (human) [Mus musculus]
Length = 1385
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 124/211 (58%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + TGK+ +VISPLI
Sbjct: 504 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLI 563
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L V AC LGS Q N + L G Y +IY+ PE + LQ+L
Sbjct: 564 SLMEDQVLQLELSNVPACLLGSAQSKNILGDVKL-GKYRVIYITPEFCSGNLDLLQKLDS 622
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
S GI L A+DE HC+S+WGHDFR +R L L+ +P++AL+ATA+
Sbjct: 623 SIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPL---------VPVIALSATASSS 673
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+REDI+ L++ K + T F RPNL V
Sbjct: 674 IREDIISCLNL-KDPQITCTGFDRPNLYLEV 703
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 101/178 (56%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S+ + VH F ++++ VVAT+A
Sbjct: 729 EGPTIIYCPSRKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVA 788
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C L A+ ++ LL
Sbjct: 789 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLIEI 848
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
E +M+ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 849 HDEKFRLYKLKMMVKMEKY-LHSSQCRRRIILSHF-EDKCLQKASLDIMGTEKCCDNC 904
>gi|395541837|ref|XP_003772843.1| PREDICTED: Werner syndrome ATP-dependent helicase [Sarcophilus
harrisii]
Length = 1448
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 126/212 (59%), Gaps = 14/212 (6%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D LV+ ATG GKSLCFQ P + G + +V+SPLI
Sbjct: 560 LKTYFGHSSFKPMQWKVIHSVLEERRDNLVVMATGYGKSLCFQFPPVFVGGISIVVSPLI 619
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ-KALRGMYSIIYVCPETVIRLIKPLQRLA 282
SLM DQ +L + ACFLGS Q +N ++ KA G Y ++Y+ PE + + L++L
Sbjct: 620 SLMEDQVLQLEMSNIKACFLGSAQSENVIKHVKA--GEYRVVYITPEFCLGNLNLLKQLD 677
Query: 283 ESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATI 342
GI L A+DE HCVS+WGHDFR +R L L+ +P++ALTATA+
Sbjct: 678 ADLGITLIAVDEAHCVSEWGHDFRNSFRNLGSLKTTLPL---------VPVLALTATASS 728
Query: 343 QVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+R DI+ L++ + + TSF RPNL V
Sbjct: 729 SIRTDIMHCLNL-RNPQVTCTSFDRPNLYLEV 759
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 139/279 (49%), Gaps = 35/279 (12%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK + + L + Y+A L R +H +F ++++ V+AT+A
Sbjct: 785 EGPTIIYCPSRKISEQVTAELQKLNLACGTYHAGLGIKLRREIHHKFMRDEIQCVIATVA 844
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ A+++ L+
Sbjct: 845 FGMGINKADIRKVIHYGAPKEMESYYQEMGRAGRDGLPSACHVLWAPADINFNRHLIGEI 904
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC--------QLCDVCV- 679
++ D + +M+ +Y + +S CR KI++ +F ED K Q CD C
Sbjct: 905 QNVDFRQYKLKMMRKLEKY-LQSSRCRRKIILSHF-EDRQLRKASLGIMGTEQCCDNCQA 962
Query: 680 ---------DGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNL 730
D +++ +A L+ A Y S+ + GI + F+ N
Sbjct: 963 RLNDPHSSDDSEEHLQDFGPQAYKLL--FAVY-----SLGEKFGIGVPV---LFLRGSNS 1012
Query: 731 KMFVSKIREQSQKYLATDLL--WWRGLARIMENKGYIRE 767
+ R D L WW+ LAR + ++G++ E
Sbjct: 1013 QRLPDNFRHHCLFGGGKDHLESWWKALARQLISEGFLEE 1051
>gi|30690461|ref|NP_195299.2| ATP-dependent DNA helicase Q-like 3 [Arabidopsis thaliana]
gi|75334307|sp|Q9FT72.1|RQL3_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 3; AltName:
Full=RecQ-like protein 3; Short=AtRecQ3; Short=AtRecQl3
gi|11121447|emb|CAC14867.1| DNA Helicase [Arabidopsis thaliana]
gi|332661156|gb|AEE86556.1| ATP-dependent DNA helicase Q-like 3 [Arabidopsis thaliana]
Length = 713
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 137/221 (61%), Gaps = 19/221 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LL+ HFGH+ + Q EA+ A ++ DC L TG GKS+C+QIPAL +V+V+SPLI
Sbjct: 27 LLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVLVVSPLI 86
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSI--IYVCPETVIR--LIK 276
+LM +Q L + G+ A +L S Q NK+ + G S+ +YV PE + +
Sbjct: 87 ALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIATKGFML 146
Query: 277 PLQRLAESRGIA-LFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L++L SRG+ L AIDE HC+S WGHDFRP YR+LS LR++ D+P++A
Sbjct: 147 KLRKL-HSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLA---------DVPVLA 196
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
LTATA +V++D++ SL++ + + +SF RPN+ + V++
Sbjct: 197 LTATAAPKVQKDVIDSLNL-RNPLVLKSSFNRPNIFYEVRY 236
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 106/193 (54%), Gaps = 11/193 (5%)
Query: 494 DLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR 553
DLL+ L L + + IIY R ++ +L G+ +AAY+A L
Sbjct: 238 DLLDNAYTDLGNLLKSCGNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRST 297
Query: 554 VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV 613
V ++ +K +++VAT+AFGMGIDK +VR + H+ P+S+E++YQE+GRAGRD + V
Sbjct: 298 VLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSV 357
Query: 614 LYANL---SSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSC----CRAKILVEYFGED 666
LY + M LL R SE++ + + + F + T C CR K ++E FGE+
Sbjct: 358 LYYGVDDRKKMEYLL--RNSENKKSSSSKKPTSDFEQ-IVTYCEGSGCRRKKILESFGEE 414
Query: 667 FSHEKC-QLCDVC 678
F ++C + CD C
Sbjct: 415 FPVQQCKKTCDAC 427
>gi|410100569|ref|ZP_11295529.1| ATP-dependent DNA helicase RecQ [Parabacteroides goldsteinii
CL02T12C30]
gi|409215604|gb|EKN08603.1| ATP-dependent DNA helicase RecQ [Parabacteroides goldsteinii
CL02T12C30]
Length = 611
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 130/226 (57%), Gaps = 21/226 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LLKK FG++S + Q E + L D LVL TG GKS+CFQ+PA+ VVISPLI
Sbjct: 8 LLKKFFGYTSFRPLQAEIIQRILRKEDSLVLMPTGGGKSICFQLPAIYMPGTAVVISPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LM DQ L +G+ A L S P+ ++++Q ++G ++Y+ PE L+ L
Sbjct: 68 ALMKDQVGGLVANGIPAAALNSMMPEEERHRIKQLCIQGKIKLLYLSPEA---LVGELHW 124
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L I+L AIDE HC+S WGHDFRP+Y +LSVL+E F +P++ALTATA
Sbjct: 125 LLPRMDISLIAIDEAHCISHWGHDFRPEYTQLSVLKEQFP---------KVPIVALTATA 175
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV-----KHSKTSS 381
R DI+ L + FV +SF RPNL ++ K KTS+
Sbjct: 176 DKVTRTDIVTQLKLRDPEVFV-SSFDRPNLSLTIRRGLNKKEKTSA 220
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 107/182 (58%), Gaps = 7/182 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R T ++A+ L +G+KA AY+A LP Q + +F +++ VV AT+AFGMG
Sbjct: 234 IVYCMSRNSTENLAEELSSYGIKAVAYHAGLPPVQREKAQDDFINDRVNVVCATVAFGMG 293
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR ++HY P S+E YYQE GRAGRDG +D +L+ ++ + L Q
Sbjct: 294 IDKSNVRWVVHYNMPGSIENYYQEIGRAGRDGMKSDTLLFYSVGDLLVLRRFAEESGQRD 353
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
+ L+ RY CR +IL+ YFGE+ S + C CDVC PP+ + + +IL
Sbjct: 354 TNLQKLNRMRRY-CEADICRRRILLSYFGEE-SDQDCGNCDVC-KNPPQ----RFDGSIL 406
Query: 696 MQ 697
+Q
Sbjct: 407 VQ 408
>gi|332023927|gb|EGI64145.1| Bloom syndrome protein-like protein [Acromyrmex echinatior]
Length = 1254
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/287 (37%), Positives = 149/287 (51%), Gaps = 41/287 (14%)
Query: 105 NVGDDVSVSGSVVSPSIVEEQKESYPGMDCNLK-----AESDSLAVSCPKEVEIGSDWEV 159
NV + + S + S +E++ Y N K E DSL S +E+
Sbjct: 466 NVAQNSNYHTSDKTKSKIEKKSVEYGQFTGNYKNDGISGEFDSLTYSHSQEML------- 518
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ ++ FG + + Q +A++A L DC +L TG GKSLC+Q+PALL + +VI
Sbjct: 519 ---KIFRQRFGLYTFRPNQLQAINATLLGFDCFILMPTGGGKSLCYQLPALLNVGLTIVI 575
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVE---------QKALRGMYSIIYVCPET 270
SPL SL+ DQ KL + A L DN+ E + AL+ I+YV PE
Sbjct: 576 SPLKSLILDQVQKLISLDIPAAHLSGSITDNQAEAIYRELSKKEPALK----ILYVTPEK 631
Query: 271 VI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
+ + L L E + F IDE HCVS+WGHDFRPDY++L LR N+
Sbjct: 632 ISASQKFCNTLTILYERELLTRFVIDEAHCVSQWGHDFRPDYKKLKCLRNNYPK------ 685
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P MALTATAT +VR DIL L M+ K+ ++SF RPNLR+S+
Sbjct: 686 ---VPTMALTATATPRVRTDILHQLGMT-NPKWFMSSFNRPNLRYSI 728
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 119/221 (53%), Gaps = 18/221 (8%)
Query: 501 ERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE 560
E ++M+ ++ I+Y +RK+ A ++ G+K +Y+A L +Q ++
Sbjct: 739 EIVAMIMTKFKNTCGIVYCLSRKDCEDYAAHMKKNGIKVLSYHAGLSDTQRSNCQGKWIS 798
Query: 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
+++ V+ ATIAFGMGIDK NVR +IH P+S+E+YYQE+GRAGRDG +ADC+L+ + +
Sbjct: 799 DEVHVICATIAFGMGIDKPNVRFVIHAALPKSIESYYQESGRAGRDGEIADCILFYHYAD 858
Query: 621 MPTLLPSRRSEDQTKQA--------YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC 672
M + ++ Q ++M++ C N + CR + + YFGE F ++C
Sbjct: 859 MHRIRKMFEQDNPNPQVISTHMDNLFKMVAFC----ENRTDCRRSLQLNYFGEIFDRQQC 914
Query: 673 -----QLCDVC-VDGPPEMKNLKEEANILMQVIAAYNEQSN 707
CD C M ++ E+A +M+ + N + N
Sbjct: 915 ISNKIATCDNCRSKAEITMLDVTEDAKEIMKAVRDINNRKN 955
>gi|328697674|ref|XP_001952385.2| PREDICTED: Bloom syndrome protein homolog [Acyrthosiphon pisum]
Length = 1185
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 133/224 (59%), Gaps = 26/224 (11%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++ + FG + + Q E ++A L HDC VL TG GKSLC+Q+PA+++ V +VISPL
Sbjct: 444 TVFRSTFGLHNFRPNQLETINAALLGHDCFVLMPTGGGKSLCYQLPAVISKGVTLVISPL 503
Query: 223 ISLMHDQCSKLSKHGV-TACFLGSGQPDNK--------VEQKALRGMYSIIYVCPETV-- 271
SL+ DQ KL + TA LG+ +P+ + + + L+ ++YV PE +
Sbjct: 504 KSLVIDQTEKLKSLDIPTAHLLGNMKPEEENIIFTKLCMSEPGLK----MLYVTPEKIAA 559
Query: 272 -IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
++L + L L +A IDE HCVS WGHDFRPDY+RL R+ + D
Sbjct: 560 SMKLGQILNNLHCRGKLARLVIDEAHCVSHWGHDFRPDYKRLGEFRKKYP---------D 610
Query: 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P+MALTATAT +VRED+L L +S GTK L+SF RPNL + V
Sbjct: 611 VPIMALTATATTRVREDVLHQLQIS-GTKLFLSSFNRPNLLYKV 653
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 110/209 (52%), Gaps = 19/209 (9%)
Query: 489 SFERTDLLNKP---------AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539
SF R +LL K AE ++++E ++ I+Y +RKE + A Y+C G+KA
Sbjct: 643 SFNRPNLLYKVVPKKGKSAMAEIANLIKEKYKNQSGIVYCLSRKECDNTATYMCNEGIKA 702
Query: 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599
+Y+A L + V ++ NK+ +V ATIAFGMGIDK +VR + HY P+S+E YYQE
Sbjct: 703 ISYHAGLSDPKRNDVQMKWITNKVNLVCATIAFGMGIDKPDVRYVFHYSLPKSIEGYYQE 762
Query: 600 AGRAGRDGHLADCVLYANLSSMPTL-----LPSRRSEDQTKQAYRMLSDCFRYGMNTSCC 654
+GRAGRDG + C LY + M + L + + K + L Y N + C
Sbjct: 763 SGRAGRDGKTSHCFLYYSYQDMHRIRKLIELDDSGNHESKKVHMQNLFRIVSYCENKADC 822
Query: 655 RAKILVEYFGEDFSHEKC-----QLCDVC 678
R + + YFGE F KC CD C
Sbjct: 823 RRTLQLNYFGETFDDNKCISNKETACDNC 851
>gi|3851581|gb|AAC72359.1| Wrn protein [Mus musculus]
Length = 988
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 124/211 (58%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + TGK+ +VISPLI
Sbjct: 504 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLI 563
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L V AC LGS Q N + L G Y +IY+ PE + LQ+L
Sbjct: 564 SLMEDQVLQLELSNVPACLLGSAQSKNILGDVKL-GKYRVIYITPEFCSGNLDLLQKLDS 622
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
S GI L A+DE HC+S+WGHDFR +R L L+ +P++AL+ATA+
Sbjct: 623 SIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPL---------VPVIALSATASSS 673
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+REDI+ L++ K + T F RPNL V
Sbjct: 674 IREDIISCLNL-KDPQITCTGFDRPNLYLEV 703
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 100/178 (56%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S+ + VH F ++++ VVAT+A
Sbjct: 729 EGPTIIYCPSRKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVA 788
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C L A+ ++ L
Sbjct: 789 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNHLIEI 848
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
E +M+ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 849 HDEKFRLYKLKMMVKMEKY-LHSSQCRRRIILSHF-EDKCLQKASLDIMGTEKCCDNC 904
>gi|325579297|ref|ZP_08149253.1| ATP-dependent helicase RecQ [Haemophilus parainfluenzae ATCC 33392]
gi|325159532|gb|EGC71666.1| ATP-dependent helicase RecQ [Haemophilus parainfluenzae ATCC 33392]
Length = 621
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 134/224 (59%), Gaps = 15/224 (6%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
+D + + L+ FG+ S + Q+E + A L+ D LV+ ATG+GKSLC+QIPAL
Sbjct: 12 TDLKTTALNTLRSVFGYQSFRKGQEEVIHAALSGQDALVVMATGNGKSLCYQIPALCFPG 71
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQ-PD--NKVEQKALRGMYSIIYVCPETV 271
+ +VISPLISLM DQ +L +G+ A FL S Q P+ +VE K + G ++Y+ PE V
Sbjct: 72 LTLVISPLISLMKDQVDQLQANGIEADFLNSSQTPEQQQQVENKLISGQLKLLYISPEKV 131
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
+ +L I+ AIDE HC+S+WGHDFRP+Y +L L+ F +
Sbjct: 132 --MTNSFFQLISYAQISFIAIDEAHCISQWGHDFRPEYTQLGGLKAAFP---------NA 180
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
P+MALTATA R+DIL L + K++ SF RPN+R++++
Sbjct: 181 PIMALTATADYATRQDILTHLKLDHPHKYI-GSFDRPNIRYTLE 223
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 146/280 (52%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + I+Y +R + IA+ L GV AAAY+A + + V +
Sbjct: 227 KPMEQLTRFVLAQKGKSGIVYCNSRSKVERIAEILRNKGVSAAAYHAGMETALRECVQQD 286
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 287 FQRDNIQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 346
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + + +L P R+ E +A ++ + CR +L+ YFGE
Sbjct: 347 PADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAE-------SQTCRRLVLLNYFGEH-R 398
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
CQ CD+C+D P + L + ++ + Q + + G+ QK ++R
Sbjct: 399 QTPCQNCDICLDPPKKYDGLIDAQKVMSTIYRV--GQCFGVQYVIAVLRGMHNQKIVERQ 456
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ K+ V I +++S+++ W+ + R + + G+I++
Sbjct: 457 HDKLSVYGIGKDKSKEH-------WQSVIRQLIHLGFIQQ 489
>gi|332285261|ref|YP_004417172.1| DNA helicase [Pusillimonas sp. T7-7]
gi|330429214|gb|AEC20548.1| DNA helicase [Pusillimonas sp. T7-7]
Length = 605
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 130/213 (61%), Gaps = 15/213 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L++ FG+ S + Q+ + + D LVL TG GKSLC+QIPAL+ V VVISPLI+
Sbjct: 9 LQQVFGYESFRGDQQAVIDHVVQGGDALVLMPTGGGKSLCYQIPALVRPGVGVVISPLIA 68
Query: 225 LMHDQCSKLSKHGVTACFLGSGQ---PDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L + GV A FL S Q +VEQ LRG ++YV PE ++ + L+ L
Sbjct: 69 LMQDQVDALIELGVRAAFLNSSQDWRTSREVEQAFLRGELDLLYVAPERLL-TDRCLELL 127
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+ R ++LFAIDE HCVS+WGHDFRP+Y LS+L E + D+P +ALTATAT
Sbjct: 128 EQGR-VSLFAIDEAHCVSQWGHDFRPEYLGLSILHERWP---------DVPRLALTATAT 177
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
R +I + L ++ FV SF RPN+R+ +
Sbjct: 178 SVTRREIAQRLDLNDAPHFV-ASFDRPNIRYRI 209
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 108/243 (44%), Gaps = 24/243 (9%)
Query: 479 SPHRDRDTDRSFERTDLLNKPAER---LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF 535
+PH DR R ++ K R L+ ++ E I+Y +R A +LC
Sbjct: 193 APHFVASFDRPNIRYRIIEKNEVRRQLLAFIKAEHEGDCGIVYCLSRARVEETADFLCQN 252
Query: 536 GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEA 595
G++A Y+A L S F + V+VATIAFGMG++K +VR + H P+S+E
Sbjct: 253 GIEALPYHAGLNASVRSANQARFLREEGVVMVATIAFGMGVNKPDVRFVAHIDLPKSVEG 312
Query: 596 YYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRR--SEDQTKQAYR---------MLSDC 644
YYQE GRAGRDG A L L + + RR +E + +R ML C
Sbjct: 313 YYQETGRAGRDGLPATAWLAYGLQDV---VQQRRMINESAGDEVFRRRLGAQLDAMLGLC 369
Query: 645 FRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNE 704
T CR + L+ YF D + C CD C++ P IL V + E
Sbjct: 370 -----ETVSCRRQRLLAYF--DQAITPCGNCDTCLEPPQAWDGTVAAQKILSAVYRLWRE 422
Query: 705 QSN 707
+
Sbjct: 423 RGQ 425
>gi|448747210|ref|ZP_21728871.1| DNA helicase, ATP-dependent, RecQ type, bacterial [Halomonas
titanicae BH1]
gi|445565122|gb|ELY21234.1| DNA helicase, ATP-dependent, RecQ type, bacterial [Halomonas
titanicae BH1]
Length = 626
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 134/223 (60%), Gaps = 17/223 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L++ FG+ S + Q+ + +A D LVL TG GKSLC+QIPALL +V+SPLI
Sbjct: 26 VLQEVFGYDSFRGPQQAIIEHVMAGGDALVLMPTGGGKSLCYQIPALLREGTAIVVSPLI 85
Query: 224 SLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKP-LQ 279
+LM DQ + L ++GV A +L S +VE + G ++YV PE RL P +Q
Sbjct: 86 ALMQDQVAALEQNGVRAAYLNSSLDYHEAVEVENRLRAGELDLLYVAPE---RLATPRMQ 142
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L E IALFAIDE HCVS+WGHDFRP+YR+LS L + F +P +ALTAT
Sbjct: 143 MLLEQTRIALFAIDEAHCVSQWGHDFRPEYRQLSQLHQRFPL---------VPRIALTAT 193
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
A + R DI++ L + + + + F RPN+R+ + ++ +++
Sbjct: 194 ADVPTRGDIMEHLQLQEAALYN-SGFDRPNIRYHIAENQGNAK 235
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 97/191 (50%), Gaps = 5/191 (2%)
Query: 497 NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHT 556
N + L ++E + I+Y +R++ A +L G+ A Y+A LP Q + T
Sbjct: 233 NAKEQLLRFIREHHDGEAGIVYCLSRRKVEETAAWLERQGLTALPYHAGLPPEQRQHHQT 292
Query: 557 EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616
F VVVATIAFGMGIDK +VR + H P+S+EAYYQE GRAGRDG AD +
Sbjct: 293 RFLREDGVVVVATIAFGMGIDKPDVRFVAHLNLPKSIEAYYQETGRAGRDGLPADAWMAF 352
Query: 617 NLSSMPTLLPSRR---SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
L + TL ++ + D K+ + D CR + L+ YFG D C
Sbjct: 353 GLQDVITLRQMQQDSSAADHQKRIEQQKLDAMLGLCEIISCRRQALLHYFG-DHLDAPCG 411
Query: 674 LCDVCVDGPPE 684
CD C+ PPE
Sbjct: 412 NCDNCLT-PPE 421
>gi|224123710|ref|XP_002330189.1| predicted protein [Populus trichocarpa]
gi|222871645|gb|EEF08776.1| predicted protein [Populus trichocarpa]
Length = 588
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 128/215 (59%), Gaps = 19/215 (8%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG+ + + Q +A A +A DC VL TG GKSLC+Q+PA L V VVISPL+SL+ D
Sbjct: 182 FGNKTFRPLQHQACKATVAKQDCFVLMPTGGGKSLCYQLPATLKPGVTVVISPLLSLIQD 241
Query: 229 QCSKLS-KHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETVI---RLIKPLQ 279
Q L+ K G+ A FL S Q + E + + ++YV PE + ++ L+
Sbjct: 242 QIITLNLKFGIPATFLNSQQTSAQAAAILQELRHDKPSCKLLYVTPERIAGNPAFLEILK 301
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L +A F +DE HCVS+WGHDFRPDY+RL L++NF +P+MALTAT
Sbjct: 302 CLHLKGQLAGFVVDEAHCVSQWGHDFRPDYKRLGCLKQNFPV---------VPVMALTAT 352
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
AT VREDILK+L + G + TSF RPNL++ V
Sbjct: 353 ATHSVREDILKTLRIP-GALVLETSFDRPNLKYEV 386
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 115/213 (53%), Gaps = 26/213 (12%)
Query: 487 DRSFERTDLLNKPAERLSMLQEPLEDGLT----IIYVPTRKETLSIAKYL---CGFGVKA 539
DR + +++ K E L L + L D I+Y ++ E + ++K+L C +KA
Sbjct: 378 DRPNLKYEVIGKTKESLKQLGDLLRDRFKNQCGIVYCLSKNECVEVSKFLNEKCK--IKA 435
Query: 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599
Y+A L Q V ++H ++ +V ATIAFGMGIDK +VR +IH +S+E+YYQE
Sbjct: 436 VYYHAGLGARQRVDVQRKWHTGEVHIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQE 495
Query: 600 AGRAGRDGHLADCV-LYA--NLSSMPTLLPSRRS------EDQTKQAYRMLSDCFRYGMN 650
+GRAGRD H A C+ LY + S + +L S + + QA +M S C +
Sbjct: 496 SGRAGRDSHPATCIALYQKKDFSRVVCMLRSGQGYKRESFKPAMAQAQKMKSYC---ELK 552
Query: 651 TSCCRAKILVEYFGEDFSHEKCQL----CDVCV 679
CR ++L+E+FGE F + C+ CD C+
Sbjct: 553 VE-CRRQVLLEHFGESFDQKACKFGSNPCDNCL 584
>gi|407717397|ref|YP_006838677.1| ATP-dependent DNA helicase RecQ [Cycloclasticus sp. P1]
gi|407257733|gb|AFT68174.1| ATP-dependent DNA helicase RecQ [Cycloclasticus sp. P1]
Length = 704
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 129/219 (58%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ S+L+ FG+ + + Q E + D VL TG GKSLC+QIPA+L +V+
Sbjct: 3 RAQSILQSTFGYDAFREPQGEIIHELEQGRDAFVLMPTGGGKSLCYQIPAVLRDGTAIVV 62
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ L++ G+ A +L S +VE + L G ++YV PE RL+
Sbjct: 63 SPLIALMQDQVDALNQLGIKAAYLNSTLNVAEAREVEAQLLNGALDLLYVAPE---RLLN 119
Query: 277 PLQ-RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P+ L E IALFAIDE HCVS+WGHDFRP+Y++L VL E F +P +A
Sbjct: 120 PIMLSLLERCHIALFAIDEAHCVSQWGHDFRPEYQKLRVLHERFP---------QVPRIA 170
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + R++I+ L + +G + + SF RPN+ +++
Sbjct: 171 LTATADQRTRDEIIAQLQL-EGARVFINSFDRPNIHYAI 208
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 107/212 (50%), Gaps = 16/212 (7%)
Query: 497 NKPAERL-SMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH 555
N P RL +QE I+Y +RK+ + A++L G A Y+A L + ++
Sbjct: 212 NNPKLRLWRFIQENHAQDAGIVYCLSRKKVEATAEWLTEQGRIALPYHAGLSQELRQKNQ 271
Query: 556 TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
F ++ ++VATIAFGMGIDK +VR + H P+S+EAYYQE GRAGRDG A+ +
Sbjct: 272 QRFLRDEGVIIVATIAFGMGIDKPDVRFVAHLSLPKSIEAYYQETGRAGRDGEPANAWMA 331
Query: 616 ANLSSMPTL---LPSRRSEDQTKQAYR-----MLSDCFRYGMNTSCCRAKILVEYFGEDF 667
L + TL + + ++++ K+ ML C CR + L+ YF E
Sbjct: 332 YGLQDVLTLRQFMQNSKADEAHKRVEHNKLESMLGLC-----ELIACRRQALLGYFDERL 386
Query: 668 SHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
+ C CD C PPE + E A ++ I
Sbjct: 387 E-QPCGACDNCTT-PPEKWDGSEAAQKILSSI 416
>gi|380696494|ref|ZP_09861353.1| ATP-dependent DNA helicase RecQ [Bacteroides faecis MAJ27]
Length = 601
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 126/214 (58%), Gaps = 16/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + L D LVL TG GKS+C+Q+PALL+ VV+SPLIS
Sbjct: 5 LKTYFGYDSFRPLQEEIIRHVLNKQDALVLMPTGGGKSICYQLPALLSEGTTVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + + + G ++Y+ PE +LI L
Sbjct: 65 LMKDQVETLQANGIAAGALNSSNDETENANLRRACVEGRLKLLYISPE---KLIAEKDYL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
I+LFAIDE HC+S+WGHDFRP+Y ++ +L + F IP++ALTATA
Sbjct: 122 LRDMSISLFAIDEAHCISQWGHDFRPEYTQMGMLHQQFP---------QIPIIALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
REDI++ LH+ + F+ +SF RPN+ VK
Sbjct: 173 KITREDIIRQLHLVQPRTFI-SSFDRPNISLDVK 205
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 103/190 (54%), Gaps = 3/190 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L +F ++++VV ATIAFGMG
Sbjct: 230 IIYCMSRNKTETVAQMLQKQGIRCGVYHAGLSSQHRDETQNDFINDRIQVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K NVR +IHY P+S+E++YQE GRAGRDG +D VL+ +L + L Q
Sbjct: 290 INKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLSSDTVLFYSLGDLILLTKFATESSQQT 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
L +Y CR +IL+ YFGE S E C CDVC + PP+ +
Sbjct: 350 INLEKLQRMQQYA-EADICRRRILLSYFGET-STEDCGNCDVCKN-PPQRFDGTVIVQKA 406
Query: 696 MQVIAAYNEQ 705
+ IA N+Q
Sbjct: 407 LSAIARANQQ 416
>gi|265751367|ref|ZP_06087430.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_33FAA]
gi|345514773|ref|ZP_08794279.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei 5_1_36/D4]
gi|423228784|ref|ZP_17215190.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T00C15]
gi|423247595|ref|ZP_17228644.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T12C06]
gi|229437610|gb|EEO47687.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei 5_1_36/D4]
gi|263238263|gb|EEZ23713.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_33FAA]
gi|392631925|gb|EIY25892.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T12C06]
gi|392635523|gb|EIY29422.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T00C15]
Length = 605
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 137/240 (57%), Gaps = 22/240 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q++ + LA D LVL TG GKS+C+Q+PALL +V+SPLIS
Sbjct: 5 LKNYFGYDSFRPLQQDIIQNILAQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + ++ L+G ++Y+ PE RL+ L
Sbjct: 65 LMKDQVESLQANGIAARALNSSNNETENINLRRECLQGKIKLLYISPE---RLLIETNFL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+ I+LFAIDE HC+S+WGHDFRP+Y +L VLR F +P++ALTATA
Sbjct: 122 LKDIQISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPK---------VPIVALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKK 401
R+DI + L + K K ++SF RPNL VK R +KD + I + +K K
Sbjct: 173 KITRKDIAQQLAL-KDPKIFISSFDRPNLSLEVK------RGYQQKDKARTILEFIEKHK 225
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 119/216 (55%), Gaps = 12/216 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T S+A L G++A Y+A L + +F ++++VV ATIAFGMG
Sbjct: 230 IIYCMSRSKTESVAAMLMKQGIRATVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L + L Q +
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMESDTLLFYSLGDLVMLSKFATESSQQE 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
L +Y + CR +IL+ YFGE H+ C CDVC + PPE + + I+
Sbjct: 350 INLEKLHRMQQYA-ESDICRRRILLNYFGETMDHD-CGNCDVCRN-PPE----RFDGTII 402
Query: 696 MQ----VIAAYNEQSNSMDDDDGIYSGIKKQKFMDR 727
+Q IA N+Q + D I G Q+ +D+
Sbjct: 403 VQKALSAIARTNQQIGTHMLID-ILKGSANQELIDK 437
>gi|374628883|ref|ZP_09701268.1| ATP-dependent DNA helicase RecQ [Methanoplanus limicola DSM 2279]
gi|373906996|gb|EHQ35100.1| ATP-dependent DNA helicase RecQ [Methanoplanus limicola DSM 2279]
Length = 720
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 133/217 (61%), Gaps = 17/217 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LLKKHFG+ L +Q+E + A L+ D L + ATG GKS+C+Q+PALL+ + VVISPLI
Sbjct: 4 LLKKHFGYDFLYPYQEEIIDAVLSGRDVLGVVATGGGKSICYQLPALLSDGMAVVISPLI 63
Query: 224 SLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ L + G+ A S + ++ A RG ++YV PE + + ++
Sbjct: 64 SLMKDQTDSLREMGIYAESFNSSLDIRDYGRISADAGRGDIDLLYVSPEKMAS--QSFRK 121
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L +S I+LFA+DE HC+S+WGH+FRP+YR+L +++ F +P++ALTATA
Sbjct: 122 LLKSAKISLFAVDEAHCISQWGHEFRPEYRQLGLIKREFPG---------VPVIALTATA 172
Query: 341 TIQVREDILKSLHMSKGTKFV-LTSFFRPNLRFSVKH 376
VR+DIL+ L + FV + SF R NL + V+
Sbjct: 173 NPAVRDDILRQLKLK--DPFVQIGSFRRSNLNYEVRE 207
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 134/260 (51%), Gaps = 19/260 (7%)
Query: 489 SFERTDLLNKPAERLSMLQEPL--------EDGLTIIYVPTRKETLSIAKYLCGFGVKAA 540
SF R++L + E+ L + L E G IIY +R + K L +G+ +
Sbjct: 195 SFRRSNLNYEVREKEDTLGQILSYIRGKKGESG--IIYCSSRNSVEILTKKLNSYGIYSL 252
Query: 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A L K + + +F + ++ +VVAT+AFGMGI+K +VR ++HY P +LE YYQE
Sbjct: 253 PYHAGLSKDERAKTQEKFIKGEVFLVVATVAFGMGINKPDVRYVLHYDLPPNLERYYQET 312
Query: 601 GRAGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG +DC+L+ + + +S Q + A L + + + CR
Sbjct: 313 GRAGRDGKSSDCILFYSRGDRIKAEYFIGRMQSAKQKRIAREKLDEMTEF-CESDRCRVS 371
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYS 717
+++YFGE + E+C CD C++ PPE + +E A +++ + S D I
Sbjct: 372 YMLKYFGEAVT-ERCGRCDNCIN-PPEYIDGREVATLILDCVMEAGTPYGSGHISD-IIR 428
Query: 718 GIKKQKFMDRPN--LKMFVS 735
G K +K +R + LK F S
Sbjct: 429 GSKSKKVKERGHDSLKAFGS 448
>gi|347541663|ref|YP_004849089.1| ATP-dependent DNA helicase RecQ [Pseudogulbenkiania sp. NH8B]
gi|345644842|dbj|BAK78675.1| ATP-dependent DNA helicase RecQ [Pseudogulbenkiania sp. NH8B]
Length = 600
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 143/236 (60%), Gaps = 22/236 (9%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
++LL+ FG+ + + Q E ++ + LVL TG GKSLC+QIPALL V +V+SP
Sbjct: 5 HALLQTVFGYPAFRGEQAEIVAHVGGGGNALVLMPTGGGKSLCYQIPALLREGVAIVVSP 64
Query: 222 LISLMHDQCSKLSKHGV-TACFLGSGQPDNK--VEQKALRGMYSIIYVCPETVIRLIKP- 277
LI+LM DQ + LS+ GV AC + PD + ++A G ++YV PE RL+ P
Sbjct: 65 LIALMQDQVATLSELGVAAACLNSATAPDEARDIVRQARAGTLDLLYVAPE---RLLTPR 121
Query: 278 -LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L+ L + R IALFAIDE HCVS WGHDFRP+Y++L +L E F A +P +AL
Sbjct: 122 FLELLNDLR-IALFAIDEAHCVSHWGHDFRPEYQQLGILAERFPA---------VPRIAL 171
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KH-SKTSSRASYKKDF 389
TATA Q R DIL L +++ F L+SF RPNL + V KH +K A ++D+
Sbjct: 172 TATADEQTRADILHYLRLAEARVF-LSSFDRPNLFYQVVEKHNAKKQLLAFIQQDY 226
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 104/209 (49%), Gaps = 22/209 (10%)
Query: 489 SFERTDLLNKPAER-------LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R +L + E+ L+ +Q+ I+Y +RK A++L G++A
Sbjct: 198 SFDRPNLFYQVVEKHNAKKQLLAFIQQDYPGASGIVYCLSRKRVEDTAQWLVENGIRALP 257
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A L R EF V+VAT+AFGMGIDK +VR + H P+S E +YQE+G
Sbjct: 258 YHAGLGHEVRDRHQREFLREDGVVMVATVAFGMGIDKPDVRFVAHIDLPKSPENFYQESG 317
Query: 602 RAGRDGHLADCVLYANLSSMPTL--------LPSRRSEDQTKQAYRMLSDCFRYGMNTSC 653
RAGRDG A L L+ M L + + + + + + ML+ C T+
Sbjct: 318 RAGRDGLPAASWLCYGLNDMVQLTQMIEGSEMAALQKQVELSKLDAMLAFC-----ETAA 372
Query: 654 CRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
CR + ++ +F E + C CD C++ P
Sbjct: 373 CRRQHILAHFSEQSA--PCGHCDNCLNPP 399
>gi|297570067|ref|YP_003691411.1| ATP-dependent DNA helicase RecQ [Desulfurivibrio alkaliphilus AHT2]
gi|296925982|gb|ADH86792.1| ATP-dependent DNA helicase RecQ [Desulfurivibrio alkaliphilus AHT2]
Length = 609
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 140/256 (54%), Gaps = 32/256 (12%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
++ LK FG +S + Q+E + LA D VL TG GKSLC+Q+PAL V +V+
Sbjct: 4 QIEQTLKDVFGFASFRPQQREIIEDLLAGRDAFVLMPTGGGKSLCYQLPALHRPGVAIVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR---GMYSIIYVCPETVIRLIK 276
SPLISLM DQ L G+ A S + Q R G ++YV PE RL+
Sbjct: 64 SPLISLMKDQVDALKAQGIKAACYNSALEAQEARQVLARLHGGELDLLYVAPE---RLMS 120
Query: 277 P--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
L RL E + IALFAIDE HCVS+WGHDFRP+Y +L LR+ F IPL+
Sbjct: 121 EDFLGRLRELQ-IALFAIDEAHCVSQWGHDFRPEYIQLGRLRQKFPG---------IPLI 170
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLID 394
ALTATA R+DI+ L++ K + LTSF RPN+R++V K+ F QL+D
Sbjct: 171 ALTATAEPHTRKDIIARLNLEKARCY-LTSFDRPNIRYTVLEK--------KRPFNQLLD 221
Query: 395 IYTKKKKTGEKEKSAI 410
G +E++ I
Sbjct: 222 FL-----DGRREEAGI 232
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 133/255 (52%), Gaps = 13/255 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK + L G AA+Y+A L + RV F + L ++VAT+AFGMG
Sbjct: 232 IIYCLSRKRVEQLTAKLQEAGFAAASYHAGLSGEERSRVQEAFLRDDLPLIVATVAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPSRRSED 632
IDK N+R ++H+ P+++E YYQE GRAGRDG ++ +L + + L+ + ++E+
Sbjct: 292 IDKSNIRYVVHHDVPKNIEGYYQETGRAGRDGLNSEALLLFGMGDVALARGLIDNSQNEE 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ + L+ + T CR ++L+ YFGE + + C CD C+D PPEM + E+A
Sbjct: 352 RRRIENHKLAAMVGFAQATG-CRRRVLLGYFGETLAAD-CGNCDTCLD-PPEMVEVTEDA 408
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWW 752
+ I N++ D + G K Q+ ++ + ++ I K +W
Sbjct: 409 RKALSCIYRVNQRFGLGHVVD-VLRGSKNQRLLELGHHRLSTYGIGADRDKD------YW 461
Query: 753 RGLARIMENKGYIRE 767
+ L R + + GY+ +
Sbjct: 462 QALLRHLIHLGYVEQ 476
>gi|452821743|gb|EME28770.1| ATP-dependent DNA helicase RecQ [Galdieria sulphuraria]
Length = 529
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/228 (42%), Positives = 135/228 (59%), Gaps = 20/228 (8%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT-GKVVV 217
++ + LKK+FG+ + + Q+E +++ L D LA TG GKSLCFQ+PALL GKV
Sbjct: 4 TRIENNLKKYFGYENFRPLQQEVITSVLEGKDVFFLAPTGGGKSLCFQLPALLLEGKVSF 63
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK-------VEQKALRGMYSIIYVCPET 270
VISPL++L+ DQ +KL+ + A + S Q +EQ + S+IY+ PE
Sbjct: 64 VISPLVALIEDQVNKLTALNIRAYSILSCQGKKHKERIFSLLEQSHKERLPSLIYLTPEC 123
Query: 271 VI--RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
V R K L+ L ++ I LFA+DE HC+S WGHDFRP YRRL + LK L
Sbjct: 124 VSTNRFQKLLKSLYRNKEIGLFAVDEAHCISCWGHDFRPKYRRLEI---------LKQLC 174
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
DIP++ALTATAT V +DI+ L M + +F SF RPN+ + V H
Sbjct: 175 CDIPILALTATATKMVVDDIITCLGMKQCIQF-RQSFNRPNIFYQVIH 221
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 93/170 (54%), Gaps = 11/170 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY R+ T + + L G+KA Y+A + ++ ++ N L V+ T+AFGMG
Sbjct: 246 IIYARQREVTEYLCQKLIASGIKAGVYHAGKKACEKQKTLKDWLSNDLSVICCTVAFGMG 305
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR +IH+ P+SLE +YQE+GRAGRDG + LY + S +L R ++
Sbjct: 306 IDKPDVRFVIHFNLPKSLENFYQESGRAGRDGFPSCSRLYYSSSDFFSLQEMSRGKEYMP 365
Query: 636 QAYRMLSDCFRYGM-------NTSCCRAKILVEYFGEDFSHEKCQLCDVC 678
Y L C R G+ N CR K LV+YFGE FS C CD+C
Sbjct: 366 STY--LDKCSR-GIEALYEFCNQPICRRKQLVKYFGETFSG-ICDSCDIC 411
>gi|393784306|ref|ZP_10372471.1| ATP-dependent DNA helicase RecQ [Bacteroides salyersiae CL02T12C01]
gi|392666082|gb|EIY59599.1| ATP-dependent DNA helicase RecQ [Bacteroides salyersiae CL02T12C01]
Length = 601
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 127/214 (59%), Gaps = 16/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + L D LVL TG GKS+C+Q+PALL VV+SPLIS
Sbjct: 5 LKTYFGYESFRPLQEEIIQNLLDRKDSLVLMPTGGGKSICYQLPALLCEGTAVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + + + G ++Y+ PE +LI + L
Sbjct: 65 LMKDQVETLRANGIAAGALNSSNDETENANLRRACIEGKLKLLYISPE---KLITEIDYL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
++LFAIDE HC+S+WGHDFRP+Y ++ +L + F IP++ALTATA
Sbjct: 122 LRDMHLSLFAIDEAHCISQWGHDFRPEYAQMGILHQVFP---------HIPIIALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
REDI++ LH++ F+ +SF RPNL +VK
Sbjct: 173 KITREDIIRQLHLTDPKVFI-SSFDRPNLSLAVK 205
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 98/169 (57%), Gaps = 3/169 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L Q +F ++++VV ATIAFGMG
Sbjct: 230 IIYCMSRSKTETVAQMLQKHGIRCGVYHAGLSTQQRDATQDDFINDRIQVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L + L +Q
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTLLFYSLGDLILLTKFATESNQQS 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
L +Y + CR +IL+ YFGE + C CDVC + PPE
Sbjct: 350 INLEKLQRMQQYA-EANICRRRILLSYFGEKVEKD-CGNCDVCRN-PPE 395
>gi|307195272|gb|EFN77228.1| Bloom syndrome protein-like protein [Harpegnathos saltator]
Length = 1091
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 129/223 (57%), Gaps = 26/223 (11%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ + FG + + Q +A++A L DC VL TG GKSLC+Q+PALL+ + VVISPL
Sbjct: 400 IFRLKFGLYTFRPNQLQAINATLVGFDCFVLMPTGGGKSLCYQLPALLSTGLTVVISPLK 459
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVE---------QKALRGMYSIIYVCPETVI-- 272
SL+ DQ KL + A L S D + E + AL+ I+YV PE +
Sbjct: 460 SLILDQVQKLISLDIPAAQLSSSVTDKQAEAVYRELCKKEPALK----ILYVTPEKISAS 515
Query: 273 -RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
+ + L E + F IDE HCVS+WGHDFRPDY++L LR+N+ +
Sbjct: 516 QKFCNTMTTLYERDLLTRFVIDEAHCVSQWGHDFRPDYKKLKCLRKNYPK---------V 566
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
P MALTATAT +VR DIL L M+K K+ ++SF RPNLR+S+
Sbjct: 567 PTMALTATATPRVRTDILHQLDMTK-PKWFMSSFNRPNLRYSI 608
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 120/215 (55%), Gaps = 10/215 (4%)
Query: 501 ERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE 560
E ++M++ ++ I+Y +RK+ A +L +KA +Y+A L +Q ++
Sbjct: 619 EVVAMIKTKFKNVCGIVYCLSRKDCEDYAAHLKKNCIKALSYHAGLTDNQRNNCQGKWIL 678
Query: 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
+++ V+ ATIAFGMGIDK NVR +IH P+S+E YYQE+GRAGRDG +ADC+L+ N +
Sbjct: 679 DEIHVICATIAFGMGIDKPNVRYVIHAALPKSIEGYYQESGRAGRDGEIADCILFYNYAD 738
Query: 621 MPTLLPSRRSEDQTKQAYRM-LSDCFR---YGMNTSCCRAKILVEYFGEDFSHEKC---- 672
M + ++ Q R + + F+ + NT+ CR + + YFGE F+ E+C
Sbjct: 739 MHRIRKMIEMDNSNPQVIRTHMDNLFKMVAFCENTTDCRRSLQLNYFGEVFNREQCASSK 798
Query: 673 -QLCDVC-VDGPPEMKNLKEEANILMQVIAAYNEQ 705
CD C M ++ E+A +M+ + N +
Sbjct: 799 ITACDNCRCKDEITMLDVTEDAKEVMKTVRNINNR 833
>gi|384249672|gb|EIE23153.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 330
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 145/242 (59%), Gaps = 24/242 (9%)
Query: 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLM 226
K G + + QKEA++A L DCLVL TG GKSLC+ +PA++TGK+ VV+SPLI+LM
Sbjct: 31 KDLGFNDFRGKQKEAITAALTGSDCLVLMPTGGGKSLCYALPAVITGKLAVVVSPLIALM 90
Query: 227 HDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS------IIYVCPETVI--RLIKPL 278
DQ S +K G+ + + S + + K +RG+ + +++V PET +L++ +
Sbjct: 91 QDQVSNFNKRGIKSDYFCSTRTE-KERAAIIRGLQTANIALRLLFVTPETFSSEQLLEHM 149
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+ + S +AL AIDE HC+S WGHDFRP YRRLS +R +P+MALTA
Sbjct: 150 RGIYASGQLALVAIDEAHCISSWGHDFRPAYRRLSSIRRELPG---------VPIMALTA 200
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTK 398
TAT QV++DI +S+ + ++TSF RPN+ + V++ S ++ Q+ DI +
Sbjct: 201 TATKQVQDDIAQSVL--RNPLRLITSFNRPNISYHVRYQLQGSSSAVS----QIADIIEE 254
Query: 399 KK 400
K
Sbjct: 255 MK 256
>gi|157373532|ref|YP_001472132.1| ATP-dependent DNA helicase RecQ [Shewanella sediminis HAW-EB3]
gi|157315906|gb|ABV35004.1| ATP-dependent DNA helicase RecQ [Shewanella sediminis HAW-EB3]
Length = 607
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 134/219 (61%), Gaps = 20/219 (9%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
++S L+ FG+ + + Q+E + + +DCLV+ TG GKSLC+Q+PAL + +V+S
Sbjct: 13 LSSSLQSVFGYRTFREGQREVIEQSCSGYDCLVIMPTGGGKSLCYQLPALQLPGLTIVVS 72
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIR--LI 275
PLISLM DQ L++ GV+A +L S P ++ Q+ +G ++YV PE +++ I
Sbjct: 73 PLISLMKDQVDSLTQMGVSAAYLNSSLPREESARILQQMHKGEIKLLYVSPERLLQGHFI 132
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L L I+LFAIDE HC+S+WGHDFRP+Y L LRE F +P+MA
Sbjct: 133 DRLHELH----ISLFAIDEAHCISQWGHDFRPEYAALGKLREVFP---------HVPIMA 179
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA R+DI L +S + +LTSF RPN+R++V
Sbjct: 180 LTATADQATRKDICDRLTISPFS--LLTSFDRPNIRYTV 216
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 118/217 (54%), Gaps = 13/217 (5%)
Query: 489 SFERTDLLNKPAERLSMLQEPLEDGLT-------IIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ AE+L+ + L +T IIY +R+ +A+ L G A A
Sbjct: 206 SFDRPNIRYTVAEKLNAANQ-LRQFVTDQKGTSGIIYCSSRRRVDEVAERLRLQGHNAEA 264
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A + + V F +++L++VVAT+AFGMGI+K NVR ++HY P+S+EAYYQE G
Sbjct: 265 YHAGKTQEERADVQDRFLKDQLDIVVATVAFGMGINKSNVRYVVHYDIPKSVEAYYQETG 324
Query: 602 RAGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG ++ ++ A++ + L+ Q + + L+ + CR ++
Sbjct: 325 RAGRDGLDSEALMLFDPADIGRVRHLIEQSEPGPQQQVEFHKLNTMAAFA-EAQTCRRQV 383
Query: 659 LVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
L+ YF E + E C CD+C+D P +++ +L
Sbjct: 384 LLHYFDES-ALEPCGNCDICLDPPKRYNGMQDAQKVL 419
>gi|154248226|ref|YP_001419184.1| ATP-dependent DNA helicase RecQ [Xanthobacter autotrophicus Py2]
gi|154162311|gb|ABS69527.1| ATP-dependent DNA helicase RecQ [Xanthobacter autotrophicus Py2]
Length = 607
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 132/226 (58%), Gaps = 16/226 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG+ + + QKE + A D LVL TG GKSLC+Q+PAL+ +V+SPLI
Sbjct: 15 VLRHVFGYEAFRGHQKEIVEHVAAGGDALVLMPTGGGKSLCYQVPALVRPGTAIVVSPLI 74
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LMHDQ L + GV A L S +VE+ G ++YV PE + L
Sbjct: 75 ALMHDQVQALRQLGVKAAMLNSSLAPGEARQVERALAMGDLDLLYVAPERL--LTDSFLT 132
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L + I+LFAIDE HCVS+WGHDFRP+YR+L++L E F +P +ALTATA
Sbjct: 133 LLDGARISLFAIDEAHCVSQWGHDFRPEYRQLTILHERFPG---------VPRLALTATA 183
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYK 386
R +I++ L + +G F L+SF RPN+R+ ++ K + RA +
Sbjct: 184 DGPTRREIMERLALEEGRVF-LSSFDRPNIRYRIE-PKANPRAQLR 227
Score = 108 bits (271), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 113/226 (50%), Gaps = 11/226 (4%)
Query: 489 SFERTDLLNK------PAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ + P +L + D I+Y +R + + A+ L G A Y
Sbjct: 206 SFDRPNIRYRIEPKANPRAQLRAFLDAHADEAGIVYCMSRAKVEATAEILSTEGRTALPY 265
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L R F + + V+VAT+AFGMGIDK +VR ++H P+S+EAYYQE GR
Sbjct: 266 HAGLDADTRARHQDRFLKEEGVVMVATVAFGMGIDKPDVRFVVHLDLPKSIEAYYQETGR 325
Query: 603 AGRDGHLADCVLYANLSSMPTLL---PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG ++ +L + + L+ S S + K+ R D T+ CR ++L
Sbjct: 326 AGRDGLPSEALLLYGVEDVAKLIQFVESSDSPEARKRVERGKLDALLGLCETASCRRQVL 385
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQ 705
++YF ED E C CD C+ PP + E A L+ + E+
Sbjct: 386 LKYFEEDLP-EPCGNCDTCLS-PPRTFDGTEAAQKLLSCVYRTGER 429
>gi|319902947|ref|YP_004162675.1| ATP-dependent DNA helicase, RecQ-like protein [Bacteroides
helcogenes P 36-108]
gi|319417978|gb|ADV45089.1| ATP-dependent DNA helicase, RecQ-like protein [Bacteroides
helcogenes P 36-108]
Length = 603
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 128/216 (59%), Gaps = 20/216 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+ + L D LVL TG GKS+C+Q+PALL VV+SPLIS
Sbjct: 5 LKTYFGYDSFRPLQETIIRHLLDRKDALVLMPTGGGKSICYQLPALLCEGTAVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVIRLIKPLQ 279
LM DQ L +G+ A L S +++ E +LR G ++Y+ PE +L+
Sbjct: 65 LMKDQVETLCANGIAAGALNSN--NDETENASLRRLCMEGKLKLLYISPE---KLLAEAN 119
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L I+LFAIDE HC+S+WGHDFRP+Y ++ VL + F IP++ALTAT
Sbjct: 120 YLLRDMHISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFP---------QIPIIALTAT 170
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A REDI+K LH+++ K ++SF RPNL +VK
Sbjct: 171 ADKITREDIIKQLHLNQ-PKIFISSFDRPNLSLTVK 205
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 102/169 (60%), Gaps = 3/169 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T S+A+ L G+KAA Y+A L ++ +F ++++VV ATIAFGMG
Sbjct: 230 IIYCMSRSKTESVAQMLQKQGIKAAIYHAGLSAAKRDEAQDDFINDRVQVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L+ + L Q
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSLADLILLTKFATESGQQS 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
L +Y CR +IL+ YFGE+ +H+ C CDVC PPE
Sbjct: 350 INIEKLQRMQQYA-EADICRRRILLSYFGENTAHD-CGNCDVC-KNPPE 395
>gi|237747447|ref|ZP_04577927.1| ATP-dependent DNA helicase [Oxalobacter formigenes HOxBLS]
gi|229378798|gb|EEO28889.1| ATP-dependent DNA helicase [Oxalobacter formigenes HOxBLS]
Length = 614
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 132/224 (58%), Gaps = 19/224 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG+ + Q+E + + HD L+L TG GKSLC+QIPAL+ V +V+SPLI
Sbjct: 17 ILQTVFGYPVFRGQQEEIIEHVASGHDALILMPTGGGKSLCYQIPALIRDGVGIVVSPLI 76
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ L GV A +L S Q +VE+ L ++Y+ PE ++ R + L
Sbjct: 77 ALMQDQVDALETAGVRAAYLNSTQSYEEAFRVERAVLENELDLVYIAPERLVTSRCLNWL 136
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
Q+ IALFAIDE HCVS+WGHDFRP+Y +LS+L E+F D+P +ALTA
Sbjct: 137 QKAK----IALFAIDEAHCVSQWGHDFRPEYIQLSILHEHFP---------DVPRIALTA 183
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
TA R++I+ L + +F+ +SF RPN+R+ + + R
Sbjct: 184 TADRHTRDEIVSRLKLDDSRQFI-SSFDRPNIRYCIVEKENPRR 226
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 91/190 (47%), Gaps = 13/190 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ +L G+ A Y+A L + F V+VATIAFGMG
Sbjct: 242 IVYCLSRRKVEETVSFLTEQGISALPYHAGLGHAVRTENQARFLREDGIVMVATIAFGMG 301
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR + H P+S+E YYQE GRAGRDG+ A + L + + RR D++
Sbjct: 302 IDKPDVRFVAHLDLPKSMEGYYQETGRAGRDGNPATAWMAYGLQDV---VQQRRMIDESD 358
Query: 636 QAYRM-------LSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
+ L + + +C R ++L EYFGE S C CD C+ P
Sbjct: 359 ADFEHRKIQIGKLDALLGFCESLTCRRVRLL-EYFGE--SSSPCGNCDTCLSPPVAKDGT 415
Query: 689 KEEANILMQV 698
K+ +L V
Sbjct: 416 KDMQKLLSTV 425
>gi|113869442|ref|YP_727931.1| ATP-dependent DNA helicase [Ralstonia eutropha H16]
gi|113528218|emb|CAJ94563.1| ATP-dependent DNA helicase [Ralstonia eutropha H16]
Length = 615
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 130/220 (59%), Gaps = 21/220 (9%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVV 218
++LK FG+ + + Q E + DCLVL TG GKSLC+QIPALL + V +V
Sbjct: 6 AILKDVFGYHAFRGRQAEIIDHVATGGDCLVLMPTGGGKSLCYQIPALLRQRAGDGVGIV 65
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLI 275
+SPLI+LM DQ + L++ GV A L S G + VE+ L G I+YV PE RL+
Sbjct: 66 VSPLIALMQDQVAALTEAGVRAAVLNSTLTGAEASAVERDLLAGRIEILYVAPE---RLM 122
Query: 276 KP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
P Q L E + LFAIDE HCVS+WGHDFRP+Y +LSVL E F +P +
Sbjct: 123 TPRFQDLLERIRVGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPY---------VPRI 173
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA R +I++ L + F+ +SF RPN+R+ +
Sbjct: 174 ALTATADALTRNEIIERLALDNARVFI-SSFDRPNIRYRI 212
Score = 105 bits (263), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 101/188 (53%), Gaps = 8/188 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH-TEFHENKLEVVVATIAFGM 574
I+Y +RK+ A++L G G+ A Y+A + +Q+R+ H F E + V+VATIAFGM
Sbjct: 241 IVYCLSRKKVEDTAQWLSGQGINALGYHAGM-DAQVRQHHQARFREEEGLVMVATIAFGM 299
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM---PTLLPSRRSE 631
GIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + ++ ++
Sbjct: 300 GIDKPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGDVVQQKRMIDESEAD 359
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEE 691
D K+ D T+ CR ++ YF E + E C CD C++ PP + E
Sbjct: 360 DAFKRVSSSKLDALLGLCETAGCRRVRILAYFNE--ASEPCGNCDTCLE-PPATWDGTRE 416
Query: 692 ANILMQVI 699
A + + +
Sbjct: 417 AQMALSCV 424
>gi|313148719|ref|ZP_07810912.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
gi|313137486|gb|EFR54846.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
Length = 607
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 127/215 (59%), Gaps = 16/215 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + ++ D LVL TG GKS+C+Q+PALL +VISPLIS
Sbjct: 11 LKTYFGYDSFRPLQEEIIRNLMSKRDALVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S +++ + + + G ++Y+ PE +L+ L
Sbjct: 71 LMKDQVESLCANGIPAGALNSSNDESENANLRRACISGKLKLLYISPE---KLLSEADYL 127
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
I+LFA+DE HC+S+WGHDFRP+Y R+ LR F ++P++ALTATA
Sbjct: 128 LRDMTISLFAVDEAHCISQWGHDFRPEYARMGFLRTQFP---------NVPMIALTATAD 178
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
REDI++ L + + F+ +SF RPNL SVK
Sbjct: 179 KITREDIVRQLQLKQPEIFI-SSFDRPNLSLSVKR 212
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 107/191 (56%), Gaps = 3/191 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L Q +F +++EVV ATIAFGMG
Sbjct: 236 IIYCMSRSKTETVAQMLQKHGIRCGVYHAGLSARQRDEAQDDFINDRIEVVCATIAFGMG 295
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L + L +Q
Sbjct: 296 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTILFYSLGDLILLTKFATESNQQN 355
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
L+ +Y CR +IL+ YFGE + E C CDVC + PPE +
Sbjct: 356 INLEKLNRMQQYA-EADICRRRILLSYFGET-ATEDCGNCDVCRN-PPERFDGTVIVQKA 412
Query: 696 MQVIAAYNEQS 706
+ IA N+Q+
Sbjct: 413 LSAIARTNQQA 423
>gi|398835929|ref|ZP_10593279.1| ATP-dependent DNA helicase RecQ [Herbaspirillum sp. YR522]
gi|398214251|gb|EJN00833.1| ATP-dependent DNA helicase RecQ [Herbaspirillum sp. YR522]
Length = 618
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 131/214 (61%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG+SS + Q E + + D LVL TG GKSLC+Q+P+LL V VV+SPLI
Sbjct: 20 VLETVFGYSSFRGQQGEIVRHVASGGDALVLMPTGGGKSLCYQVPSLLREGVGVVVSPLI 79
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LM DQ L + GV A FL S Q + ++E++ +G ++YV PE + + +
Sbjct: 80 ALMQDQVDALDEVGVRAAFLNSSQSFDEAMQIERRLRQGDLDVLYVAPERL--MTQRCLD 137
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L +S I LFAIDE HCVS+WGHDFRP+Y +LS+L E F +P +ALTATA
Sbjct: 138 LLDSIKIGLFAIDEAHCVSQWGHDFRPEYIKLSILHERFP---------QVPRIALTATA 188
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
Q R +I+ L + + +FV +SF RPN+R+ +
Sbjct: 189 DAQTRAEIVHRLQLEQAQQFV-SSFDRPNIRYQI 221
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 86/170 (50%), Gaps = 5/170 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+ A++L G+ A AY+A + + F V+VAT+AFGMG
Sbjct: 245 IVYCLSRKKVDETAEFLRSEGLNALAYHAGMDAQARSTNQSRFLREDKIVMVATVAFGMG 304
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPSRRSED 632
IDK +VR + H P+S+E YYQE GR GRDG AD + L + ++ +++
Sbjct: 305 IDKPDVRFVCHLDLPKSIEGYYQETGRGGRDGLPADAWMAYGLQDVVQQRRMIEESEADE 364
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
K+ R D T CR ++ YFG+ + C CD+C+ P
Sbjct: 365 DFKRVLRTKLDAMLGLCETMHCRRVRILNYFGQQAT--PCGNCDICMSPP 412
>gi|352085481|ref|ZP_08953101.1| ATP-dependent DNA helicase RecQ [Rhodanobacter sp. 2APBS1]
gi|351681902|gb|EHA65016.1| ATP-dependent DNA helicase RecQ [Rhodanobacter sp. 2APBS1]
Length = 612
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 131/223 (58%), Gaps = 17/223 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LL+ FG+ S + Q+ + D LVL TG GKSLC+QIPALL +V+SPLI
Sbjct: 11 LLQSVFGYPSFRGQQQAVVEHLGEGGDALVLMPTGGGKSLCYQIPALLRQGTGIVVSPLI 70
Query: 224 SLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKP-LQ 279
+LM DQ L + GV A +L S + +VE++ L G +++YV PE RL+ P
Sbjct: 71 ALMQDQVDALREAGVAAAYLNSSLSAEAQREVERQLLAGELNLLYVAPE---RLLTPRFL 127
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L ES +ALFAIDE HCVS+WGHDFRP+YR L++L + F P +ALTAT
Sbjct: 128 GLLESIEVALFAIDEAHCVSQWGHDFRPEYRELAILHQRFP---------HAPRIALTAT 178
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
A + RE+I++ L + +FV +SF RPN+ + V + R
Sbjct: 179 ADPRTREEIVERLSLQHARQFV-SSFDRPNIGYRVGLRHNAKR 220
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 91/172 (52%), Gaps = 5/172 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A +L GV+A Y+A L + + F V+VAT+AFGMG
Sbjct: 235 IVYCLSRRKVDDTAAWLAESGVEALPYHAGLDAATRAKNQQRFLREDGVVMVATVAFGMG 294
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS---SMPTLLPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG A+ + LS +M ++ S D
Sbjct: 295 IDKPDVRFVAHLDLPRSIEGYYQETGRAGRDGLPAEAWMIYGLSDVVTMSQMIAQSESAD 354
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ K+ R + + CR ++L+ FGE + C CD C+ PP+
Sbjct: 355 ERKRVERQKLESLLAYAEATGCRRQLLLGAFGEVYPG-PCGHCDNCL-APPK 404
>gi|302772997|ref|XP_002969916.1| hypothetical protein SELMODRAFT_10140 [Selaginella moellendorffii]
gi|300162427|gb|EFJ29040.1| hypothetical protein SELMODRAFT_10140 [Selaginella moellendorffii]
Length = 703
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 140/227 (61%), Gaps = 20/227 (8%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W + + + +++FG+ S + Q E ++A ++ HD VL TG GKSL +Q+PA+ V
Sbjct: 20 WSMDLKANNRRYFGNKSFRPNQHEIINATMSGHDVFVLMPTGGGKSLTYQLPAICCPGVT 79
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGM------YSIIYVCPET 270
+V+ PL+SL+ DQ LS+ + A L S + + +++ L+ + Y ++YV PE
Sbjct: 80 LVVCPLVSLIMDQIMHLSQASIRAEHLSSNL-EYEEQRQILQQLNFDHCEYRLLYVTPEK 138
Query: 271 VIR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
+ R L++ L+ L R +A IDE HCVS+WGHDFRPDY+ L +L++ F
Sbjct: 139 IARSDNLLRNLENLHRRRLLARIVIDEAHCVSQWGHDFRPDYQNLGILKQKFP------- 191
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
D+PLMALTATAT++V+ED++++L + K F T F RPNLR+SV
Sbjct: 192 --DVPLMALTATATMRVKEDVVQALGLCKCIIFRQT-FNRPNLRYSV 235
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 20/188 (10%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVA 568
P E G IIY ++ + + + L G K Y+AS+ + RV + ++++ ++ A
Sbjct: 255 PHESG--IIYCFSKMDCERVCEQLRKTGHKIGFYHASMDPQERNRVQRMWSKDEINIICA 312
Query: 569 TIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--LP 626
T+AFGMGI+K +VR +IH+ P+S+E Y+QE+GRAGRD A C+LY + S + L
Sbjct: 313 TVAFGMGINKPDVRFVIHHSIPKSIEGYHQESGRAGRDNLPASCILYYSYSDYVRVKHLL 372
Query: 627 SRRSEDQT---------------KQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEK 671
S+ + DQT K + L Y N CR + + +FGE F
Sbjct: 373 SQGAVDQTSTGRSWNNSDTANQLKTNFDNLQRMGAYCENEVDCRRSLQLGHFGEKFDSAS 432
Query: 672 CQ-LCDVC 678
C+ CD C
Sbjct: 433 CKSTCDNC 440
>gi|255690250|ref|ZP_05413925.1| ATP-dependent DNA helicase RecQ [Bacteroides finegoldii DSM 17565]
gi|260624270|gb|EEX47141.1| ATP-dependent DNA helicase RecQ [Bacteroides finegoldii DSM 17565]
Length = 601
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 128/216 (59%), Gaps = 20/216 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + L D LVL TG GKS+C+Q+PALL+ +V+SPLIS
Sbjct: 5 LKTYFGYDSFRPLQEEIIRHILDKQDALVLMPTGGGKSICYQLPALLSEGTAIVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVIRLIKPLQ 279
LM DQ L +G+ A L S +++ E LR G ++Y+ PE +L+
Sbjct: 65 LMKDQVEALQANGIAAGALNSS--NDETENANLRRSCVAGKLKLLYISPE---KLLAEKD 119
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L I+LFAIDE HC+S+WGHDFRP+Y ++ VL + F +P++ALTAT
Sbjct: 120 YLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFP---------QVPIIALTAT 170
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A REDI++ LH+ + F+ +SF RPN+ +VK
Sbjct: 171 ADKITREDIIRQLHLIRPRTFI-SSFDRPNISLTVK 205
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 98/169 (57%), Gaps = 3/169 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L Q +F ++++VV ATIAFGMG
Sbjct: 230 IIYCMSRNKTETVAQTLLKQGIRCGVYHAGLSAQQRDETQNDFINDRIQVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D VL+ +L + L Q K
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTVLFYSLGDLILLTKFASESSQQK 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
L +Y CR +IL+ YFGE + E C CDVC + PP+
Sbjct: 350 INLEKLQRMQQYA-EADICRRRILLSYFGET-ATEDCGNCDVCKN-PPQ 395
>gi|329955315|ref|ZP_08296223.1| ATP-dependent DNA helicase RecQ [Bacteroides clarus YIT 12056]
gi|328525718|gb|EGF52742.1| ATP-dependent DNA helicase RecQ [Bacteroides clarus YIT 12056]
Length = 604
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 129/216 (59%), Gaps = 20/216 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + L +D LVL TG GKS+C+Q+PALL VV+SPLIS
Sbjct: 5 LKTYFGYDSFRPLQEEIIRHILDGNDALVLMPTGGGKSICYQLPALLREGTAVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVIRLIKPLQ 279
LM DQ L +G++A L S +++ E ALR G ++Y+ PE +L+
Sbjct: 65 LMKDQVEALCANGISAGALNSS--NDETENAALRRACTEGKLKLLYISPE---KLLAEAN 119
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L I+LFAIDE HC+S+WGHDFRP+Y ++ +L F +P++ALTAT
Sbjct: 120 YLLRDMHISLFAIDEAHCISQWGHDFRPEYTQMGILHRQFP---------QVPIIALTAT 170
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A REDI++ LH++ F+ +SF RPNL +VK
Sbjct: 171 ADKITREDIIRQLHLNHPRIFI-SSFDRPNLSLTVK 205
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 111/180 (61%), Gaps = 9/180 (5%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566
+ P E G IIY +R +T S+A+ L G++ A Y+A L ++ +F ++++VV
Sbjct: 223 RHPGESG--IIYCMSRSKTESVAQMLQKQGIRTAVYHAGLSPARRDEAQDDFINDRVQVV 280
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLP 626
ATIAFGMGIDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L+ + +L
Sbjct: 281 CATIAFGMGIDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSLADL--ILL 338
Query: 627 SRRSEDQTKQAYRM--LSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
++ + D ++ + L +Y + CR +IL+ YFGE H+ C CDVC PPE
Sbjct: 339 TKFATDSGQEGINLEKLQRMQQYA-ESDICRRRILLSYFGETADHD-CGNCDVC-KNPPE 395
>gi|119510429|ref|ZP_01629563.1| ATP-dependent DNA helicase [Nodularia spumigena CCY9414]
gi|119464958|gb|EAW45861.1| ATP-dependent DNA helicase [Nodularia spumigena CCY9414]
Length = 721
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 135/224 (60%), Gaps = 15/224 (6%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ + Q++ + L + D LV+ TG GKSLCFQ+PAL+ + VV+SPLI+
Sbjct: 11 LKYNFGYDQFRPGQRQIIEDALENRDLLVVMPTGGGKSLCFQLPALIKSGLTVVVSPLIA 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKV--EQKALR-GMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L + ++A FL S +KV ++A+R G ++YV PE ++ R + L
Sbjct: 71 LMQDQVESLRNNNISATFLNSSLNPHKVRSREEAIRNGKVRLLYVAPERLLSERFLPFLD 130
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ GI+ FAIDE HCVS+WGHDFRP+YR+L LR+ + D+P +ALTAT
Sbjct: 131 LVHHQIGISTFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYP---------DVPTIALTAT 181
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
AT +VR DI++ L + K L SF R NL + V+ S+ A
Sbjct: 182 ATDRVRGDIIQQLGL-KQPSIHLASFNRQNLYYEVRPKTKSAYA 224
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 139/274 (50%), Gaps = 15/274 (5%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
AE L +++E DG TIIY TRK+ + L V A +Y+A L + + T F
Sbjct: 224 AEILELIRE--TDGSTIIYCLTRKKVDELTFKLQNDKVVALSYHAGLSDEERSKNQTRFI 281
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
+ + V+VATIAFGMGI+K +VR ++H+ P++LE+YYQE+GRAGRD + C ++ + S
Sbjct: 282 RDDVRVIVATIAFGMGINKPDVRLVVHFDLPRNLESYYQESGRAGRDSEPSRCTMFFSFS 341
Query: 620 SMPTLLPS-RRSEDQTKQ--AYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCD 676
+ T+ S + D +Q A + L Y T CR I + YFGE F C CD
Sbjct: 342 DIKTIEWSINQKADPQEQLIAKQQLRQVIDYAEGTD-CRRTIQLGYFGERFPG-NCDNCD 399
Query: 677 VCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSK 736
C P +++ EA + +A E+ + + + G K Q+ + + K+
Sbjct: 400 NC-RYPKPVQDWTIEAMKFLSCVARCKERFGMLHIIE-VLRGAKSQRVIQNKHDKLSTYG 457
Query: 737 IREQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
I + L WR L R + ++G + + +D
Sbjct: 458 IGKDK------SLDEWRMLGRSLLHQGLLEQTND 485
>gi|417840674|ref|ZP_12486783.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M19501]
gi|341950862|gb|EGT77444.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M19501]
Length = 615
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 132/216 (61%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK FG+ S + Q+E ++A L D LV+ ATG+GKSLC+QIPAL + +VISPL
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFEGLTLVISPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A FL S Q +V+ K + G ++YV PE V +
Sbjct: 78 ISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKV--MTNSFF 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L ++ AIDE HC+S+WGHDFRP+Y +L L+ +F D P+MALTAT
Sbjct: 136 QLISYSKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFP---------DAPIMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A R+DIL L++ K++ SF RPN+R++++
Sbjct: 187 ADYATRQDILSHLNLENPHKYI-GSFDRPNIRYTLE 221
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 148/280 (52%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + IIY +R + IA+ LC GV AAAY+A + ++ RV +
Sbjct: 225 KPMEQLTRFVLAQKGKSGIIYCNSRNKVERIAESLCNKGVSAAAYHAGMETARRDRVQQD 284
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 285 FQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 344
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + + +L P R+ E +A ++ + CR +L+ YFGE
Sbjct: 345 PADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAE-------SQTCRRLVLLNYFGEH-R 396
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
C CD+C+D P + L + ++ + Q + G++ QK ++R
Sbjct: 397 QTVCNNCDICLDPPKKYDGLVDAQKVMSAIYRV--GQCFGAHYVIAVLRGMQNQKIIERQ 454
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ K+ V I +++S+++ W+ + R + + G++++
Sbjct: 455 HDKLSVYGIGKDKSKEH-------WQSVIRQLIHLGFVQQ 487
>gi|339327532|ref|YP_004687225.1| ATP-dependent DNA helicase RecQ [Cupriavidus necator N-1]
gi|338167689|gb|AEI78744.1| ATP-dependent DNA helicase RecQ [Cupriavidus necator N-1]
Length = 628
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 130/220 (59%), Gaps = 21/220 (9%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVV 218
++LK FG+ + + Q E + DCLVL TG GKSLC+QIPALL + V +V
Sbjct: 19 AILKDVFGYHAFRGRQAEIIDHVATGGDCLVLMPTGGGKSLCYQIPALLRQRAGDGVGIV 78
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLI 275
+SPLI+LM DQ + L++ GV A L S G + VE+ L G I+YV PE RL+
Sbjct: 79 VSPLIALMQDQVAALTEAGVRAAVLNSTLTGAEASAVERDLLAGRIEILYVAPE---RLM 135
Query: 276 KP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
P Q L E + LFAIDE HCVS+WGHDFRP+Y +LSVL E F +P +
Sbjct: 136 TPRFQDLLERIRVGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPY---------VPRI 186
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA R +I++ L + F+ +SF RPN+R+ +
Sbjct: 187 ALTATADALTRNEIIERLALDNARVFI-SSFDRPNIRYRI 225
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 107/191 (56%), Gaps = 14/191 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH-TEFHENKLEVVVATIAFGM 574
I+Y +RK+ A++L G G+ A Y+A + +Q+R+ H F E + V+VATIAFGM
Sbjct: 254 IVYCLSRKKVEDTAQWLSGQGINALGYHAGM-DAQVRQHHQARFREEEGLVMVATIAFGM 312
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT 634
GIDK +VR + H P+S+E YYQE GRAGRDG A+ + L ++ +R D++
Sbjct: 313 GIDKPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGD---VVQQKRMIDES 369
Query: 635 K--QAYRMLS----DCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
+ +A++ +S D T+ CR ++ YF E + E C CD C++ PP +
Sbjct: 370 EADEAFKRVSSSKLDALLGLCETAGCRRVRILAYFNE--ASEPCGNCDTCLE-PPATWDG 426
Query: 689 KEEANILMQVI 699
EA + + +
Sbjct: 427 TREAQMALSCV 437
>gi|109896583|ref|YP_659838.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas atlantica T6c]
gi|109698864|gb|ABG38784.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas atlantica T6c]
Length = 602
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 133/232 (57%), Gaps = 19/232 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
S+LK FG+ ++ Q++ + L HD LVL TG GKSLC+QIPAL+ + +V+SP
Sbjct: 12 QSVLKTVFGYDEFRDGQRDVIEKILQGHDVLVLMPTGGGKSLCYQIPALVLEGLTIVVSP 71
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGM----YSIIYVCPETVIRLIKP 277
LI+LM DQ L GV+A ++ S ++ RGM Y +IYV PE +++
Sbjct: 72 LIALMKDQVDALVASGVSAAYINSNLSSEEI-HNVYRGMQDGHYKLIYVAPERLMQF-DF 129
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
+QRL S +ALFA+DE HCVS WGHDFR +YRRL L++ F +P++ LT
Sbjct: 130 IQRL-HSLELALFAVDEAHCVSHWGHDFRKEYRRLGQLKQQFPT---------VPVVGLT 179
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFS--VKHSKTSSRASYKK 387
ATA I R DIL+ L + F SF RPN+R++ K+ T Y K
Sbjct: 180 ATADITTRSDILQQLALQDPFIFK-GSFDRPNIRYNQLFKYKATDQVIQYVK 230
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 97/180 (53%), Gaps = 15/180 (8%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
++G IIY +RK+ ++ L G+ A Y+A L ++ +F ++ ++++VAT+
Sbjct: 232 QEGSGIIYCNSRKKVDDLSIALARQGINCAGYHAGLEGPIRDKIQRDFIQDNIDIIVATV 291
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL----- 625
AFGMGI+K NVR ++H+ P+S+EAYYQE GRAGRDG A+ +L + +
Sbjct: 292 AFGMGINKSNVRFVVHFDLPRSVEAYYQETGRAGRDGMPAEALLLFDEKDAARIRQWIGM 351
Query: 626 ---PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
P R + K A CR ++L+ YF E +H+ C CD+C+D P
Sbjct: 352 GDNPERLDIELQKFAAMEAF------AEAQTCRRQVLLNYFSEYSAHD-CGNCDICLDPP 404
>gi|392533361|ref|ZP_10280498.1| ATP-dependent DNA helicase [Pseudoalteromonas arctica A 37-1-2]
Length = 607
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 137/220 (62%), Gaps = 17/220 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K ++LK+ FG+S ++ QK + A + D LVL TG GKS+C+QIPAL+ V +VI
Sbjct: 14 KPETVLKQVFGYSEFRDGQKTVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVI 73
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ S+L GV A ++ + + V Q+ +G ++YV PE V++ +
Sbjct: 74 SPLISLMQDQVSQLQALGVKAAYVNNSLAREEQQLVYQQLHQGQIKLLYVAPEKVLQR-E 132
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L+RL+ ++LFAIDE HCVS WGHDFRP Y RL+ L++ F +P+MAL
Sbjct: 133 FLERLSHL-NVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFA---------HVPMMAL 182
Query: 337 TATATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSVK 375
TATA R DI++ L + + ++ T SF RPN+R++++
Sbjct: 183 TATADKATRFDIVEQLKLQQ--PYIHTGSFDRPNIRYTIE 220
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 101/176 (57%), Gaps = 17/176 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK IA+ + G+ AAAY+A + Q + V T F + +++VVAT+AFGMG
Sbjct: 242 IIYCTSRKRVDDIAEKIADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMG 301
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPS----- 627
I+K NVR ++HY P+S+E+YYQE GRAGRDG A+ ++Y A++ +
Sbjct: 302 INKPNVRFVLHYDIPKSIESYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQ 361
Query: 628 -RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
RR E+Q A ++ CR +IL+ YF E + E C CD+C++ P
Sbjct: 362 RRRVEEQRFNAMASFAEA-------QTCRRQILLNYFSE-YQREPCGNCDICLNPP 409
>gi|359441917|ref|ZP_09231801.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20429]
gi|358036178|dbj|GAA68050.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20429]
Length = 596
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 137/220 (62%), Gaps = 17/220 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K ++LK+ FG+S ++ QK + A + D LVL TG GKS+C+QIPAL+ V +VI
Sbjct: 3 KPETVLKQVFGYSEFRDGQKTVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVI 62
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ S+L GV A ++ + + V Q+ +G ++YV PE V++ +
Sbjct: 63 SPLISLMQDQVSQLQALGVKAAYVNNSLAREEQQLVYQQLHQGQIKLLYVAPEKVLQR-E 121
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L+RL+ ++LFAIDE HCVS WGHDFRP Y RL+ L++ F +P+MAL
Sbjct: 122 FLERLSHL-NVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFA---------HVPMMAL 171
Query: 337 TATATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSVK 375
TATA R DI++ L + + ++ T SF RPN+R++++
Sbjct: 172 TATADKATRFDIVEQLKLQQ--PYIHTGSFDRPNIRYTIE 209
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 101/176 (57%), Gaps = 17/176 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK IA+ + G+ AAAY+A + Q + V T F + +++VVAT+AFGMG
Sbjct: 231 IIYCTSRKRVDDIAEKIADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMG 290
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPS----- 627
I+K NVR ++HY P+S+E+YYQE GRAGRDG A+ ++Y A++ +
Sbjct: 291 INKPNVRFVLHYDIPKSIESYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQ 350
Query: 628 -RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
RR E+Q A ++ CR +IL+ YF E + E C CD+C++ P
Sbjct: 351 RRRVEEQRFNAMASFAEA-------QTCRRQILLNYFSE-YQREPCGNCDICLNPP 398
>gi|338212508|ref|YP_004656563.1| ATP-dependent DNA helicase RecQ [Runella slithyformis DSM 19594]
gi|336306329|gb|AEI49431.1| ATP-dependent DNA helicase RecQ [Runella slithyformis DSM 19594]
Length = 746
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 136/216 (62%), Gaps = 18/216 (8%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK+ FG+S + Q+ +++ + ++ V+ TG+GKSLC+Q+PA+ T + +VISPLI+
Sbjct: 16 LKEIFGYSQFRGEQEAIINSIMGGNNTFVIMPTGAGKSLCYQLPAITTEGIAIVISPLIA 75
Query: 225 LMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRL--IKPLQ 279
LM +Q +L+ G+ A FL S NKV++ AL G ++Y+ PE++ + + LQ
Sbjct: 76 LMKNQVDQLNAFGINAQFLNSTLNKAEINKVKKDALDGTLKLLYIAPESLTKEENLDFLQ 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
R I+ A+DE HC+S+WGHDFRP+YRR+ + +N D+PL+ALTAT
Sbjct: 136 R----ANISFVAVDEAHCISEWGHDFRPEYRRIRGIIDNINP--------DLPLIALTAT 183
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
AT +V++DI+K+L M + F TSF R NL + ++
Sbjct: 184 ATPKVQQDIVKNLRMEEAAMFK-TSFNRKNLYYEIR 218
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 108/192 (56%), Gaps = 5/192 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK +A L VKA Y+A L S F + +V+VATIAFGMG
Sbjct: 241 IIYCLSRKTVEEVANLLNVNDVKALPYHAGLDSSTRMHNQDAFLNEEADVIVATIAFGMG 300
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR +IHY P+SLE YYQE GRAGRDG +CV++ + + L + + T+
Sbjct: 301 IDKPDVRFVIHYDAPKSLEGYYQETGRAGRDGLEGNCVMFYCIDDIQKLEKFNKDKSVTE 360
Query: 636 Q--AYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEAN 693
+ A +L++ Y N CR + L+ YFGE + + C CD C+ P + +++EA
Sbjct: 361 RDNARHLLNEMVAYA-NLGACRRRQLLSYFGE-YMEKDCGFCDNCIK-PTQRIRIQDEAV 417
Query: 694 ILMQVIAAYNEQ 705
++++ I +E+
Sbjct: 418 LVLKAIDQTDER 429
>gi|416052424|ref|ZP_11578281.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347992055|gb|EGY33485.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 629
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 133/214 (62%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ S + Q+E + A L+ DCLV+ ATG+GKSLC+QIPAL + +V+SPLI
Sbjct: 34 VLHSVFGYQSFRKGQQEIIDAVLSGQDCLVIMATGTGKSLCYQIPALCFDGMTLVVSPLI 93
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +GV A +L S Q +V+ +A+ G ++Y+ PE V + +
Sbjct: 94 SLMKDQVDQLRANGVEADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEKV--MANSFFQ 151
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
++ AIDE HC+S+WGHDFRP+Y +L L+ +F ++P+MALTATA
Sbjct: 152 FISLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGSFP---------NVPIMALTATA 202
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++DILK+L +++ F + SF RPN+R+++
Sbjct: 203 DQTTQQDILKNLRLNR-PHFYVGSFDRPNIRYTL 235
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 143/280 (51%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L + I+Y +R + IA+ LC GV+AAAY+A + +V +
Sbjct: 240 KPMEQLCRFVLAQKGKSGIVYCNSRNKVERIAETLCNKGVRAAAYHAGMENGLREKVQRD 299
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 300 FQRDNIQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYD 359
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + +L P R+ E QA ++ + CR +L+ YFGE
Sbjct: 360 PADYVWLNKMLMEKSETPQRQIEQHKLQAIGEFAE-------SQTCRRLVLLNYFGEH-R 411
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
CQ CD+C+D PP+ N +A +M I Q + G+ QK ++
Sbjct: 412 QTPCQNCDICLD-PPKKYNGLLDAQKIMSAIYRTG-QCYGAHYVIAVLRGMNNQKIREQR 469
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ ++ V I +E S +Y W+ + R + + G +R+
Sbjct: 470 HEQLSVYGIGKEHSTEY-------WQSVLRQLVHLGLVRQ 502
>gi|319760859|ref|YP_004124796.1| ATP-dependent DNA helicase RecQ [Alicycliphilus denitrificans BC]
gi|330822764|ref|YP_004386067.1| ATP-dependent DNA helicase RecQ [Alicycliphilus denitrificans K601]
gi|317115420|gb|ADU97908.1| ATP-dependent DNA helicase RecQ [Alicycliphilus denitrificans BC]
gi|329308136|gb|AEB82551.1| ATP-dependent DNA helicase RecQ [Alicycliphilus denitrificans K601]
Length = 622
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 134/224 (59%), Gaps = 19/224 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGK-VVVVI 219
+L FG+ + Q+ + +A D LVL TG GKSLC+Q+PA++ G+ V VV+
Sbjct: 7 VLHDVFGYDQFRGPQQAIIDHVIAGGDALVLMPTGGGKSLCYQVPAIVRRDAGRGVTVVV 66
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVI--RL 274
SPLI+LMHDQ L + GV A FL S Q VE++ RG +++Y PE V R
Sbjct: 67 SPLIALMHDQVGALHEAGVEAAFLNSTLDWQQTLDVERRLSRGEITLLYAAPERVTTDRF 126
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ L L E ++LFAIDE HCVS+WGHDFRP+YR+LS+L E + +P +
Sbjct: 127 LGLLDGLHERGLLSLFAIDEAHCVSQWGHDFRPEYRQLSILHERYP---------RVPRI 177
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
ALTATA R DI++ L + + +FV +SF RPN+R+ ++ K
Sbjct: 178 ALTATADALTRADIVEGLRLQEARQFV-SSFDRPNIRYRLEEKK 220
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 115/233 (49%), Gaps = 21/233 (9%)
Query: 489 SFERTDL---LNKPAERLSML-----QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAA 540
SF+R ++ L + E L+ L +E L D ++Y +RK +A+ LC G+ A
Sbjct: 206 SFDRPNIRYRLEEKKEPLTQLMRFIDREHLGDA-GVVYCQSRKRVEELAQALCDAGLTAL 264
Query: 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP ++ F V+VATIAFGMGIDK +VR + H P+++E YYQE
Sbjct: 265 PYHAGLPAEVRQQNQDRFLREDGIVMVATIAFGMGIDKPDVRFVAHVDMPKNIEGYYQET 324
Query: 601 GRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT------KQAYRMLSDCFRYGMNTSCC 654
GRAGRDG AD + L ++ RR D++ K R D + C
Sbjct: 325 GRAGRDGLPADAWMAYGLQD---VVNQRRMIDESPAGEEFKAVMRGKLDALLALAEATDC 381
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSN 707
R L+ YFGE E C CD C++ PP + + + A L+ I ++ S
Sbjct: 382 RRVRLLGYFGE--QSEPCGNCDNCLN-PPAVWDGTDAARKLLSTIYRVHQASG 431
>gi|359787299|ref|ZP_09290357.1| ATP-dependent DNA helicase RecQ [Halomonas sp. GFAJ-1]
gi|359295428|gb|EHK59697.1| ATP-dependent DNA helicase RecQ [Halomonas sp. GFAJ-1]
Length = 608
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 134/223 (60%), Gaps = 17/223 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L++ FG+ S + Q+ + +A D LVL TG GKSLC+QIPALL +V+SPLI
Sbjct: 12 VLQEVFGYDSFRGPQQAIIEHVIAGGDALVLMPTGGGKSLCYQIPALLREGTAIVVSPLI 71
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKP-LQ 279
+LM DQ + L ++GV A +L S ++ VE + G ++YV PE RL P +Q
Sbjct: 72 ALMQDQVAALEQNGVRAAYLNSSLDYHEAVDVENRLRAGELDLLYVAPE---RLAMPRMQ 128
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L E IALFAIDE HCVS+WGHDFRP+YR+LS L + F +P +ALTAT
Sbjct: 129 MLLEQTQIALFAIDEAHCVSQWGHDFRPEYRQLSHLHQRFP---------QVPRIALTAT 179
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
A + R DI++ L + + + F RPN+R+ + ++ +++
Sbjct: 180 ADVPTRGDIMEHLQLQNAALYN-SGFDRPNIRYHIAENQGNAK 221
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 97/191 (50%), Gaps = 5/191 (2%)
Query: 497 NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHT 556
N + L ++E I+Y +R++ A +L G+ A Y+A LP Q + T
Sbjct: 219 NAKEQLLRFIREHHNGEAGIVYCLSRRKVEETAAWLERQGLTALPYHAGLPAEQRQHHQT 278
Query: 557 EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616
F V+VATIAFGMGIDK +VR + H P+S+EAYYQE GRAGRDG AD +
Sbjct: 279 RFLREDGVVIVATIAFGMGIDKPDVRFVAHLNLPKSIEAYYQETGRAGRDGLPADAWMAY 338
Query: 617 NLSSMPTLLPSRR---SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
L + TL ++ + DQ K+ + D CR + L+ YFG+ C
Sbjct: 339 GLQDVITLRQMQQGSSAADQQKRIEQQKLDAMLGLCEIISCRRQALLHYFGDHLD-APCG 397
Query: 674 LCDVCVDGPPE 684
CD C+ PPE
Sbjct: 398 NCDNCLT-PPE 407
>gi|344338286|ref|ZP_08769218.1| ATP-dependent DNA helicase RecQ [Thiocapsa marina 5811]
gi|343801568|gb|EGV19510.1| ATP-dependent DNA helicase RecQ [Thiocapsa marina 5811]
Length = 734
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 128/216 (59%), Gaps = 19/216 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L + FG+ + Q E + +A D LVL TG GKSLC+QIPALL V VV+SPLI
Sbjct: 8 VLNRVFGYDRFRGAQAEIIDRVIAGGDALVLMPTGGGKSLCYQIPALLRPGVGVVVSPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ L + GV A FL S Q VE+ L G ++YV PE ++ R + L
Sbjct: 68 ALMQDQVDALRQLGVRAAFLNSSLTLQEARAVEEAMLSGDLDLVYVAPERLLTERFLALL 127
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+R+ +ALFAIDE HCVS+WGHDFRP+Y +L +L E + IP +ALTA
Sbjct: 128 ERVQ----VALFAIDEAHCVSQWGHDFRPEYIQLHLLHERWP---------RIPRVALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA R +IL L + + +FV +SF RPN+R+ +
Sbjct: 175 TADAPTRAEILTRLGLEQAGQFV-SSFDRPNIRYRI 209
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 109/205 (53%), Gaps = 17/205 (8%)
Query: 489 SFERTDLLNKPAERLSMLQE---------PLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539
SF+R ++ + E+ S Q+ P + G I+Y +R++ A YL G+ A
Sbjct: 199 SFDRPNIRYRIVEKASPRQQLIAFLRTEHPGDAG--IVYCLSRRKVEETAAYLATQGIAA 256
Query: 540 AAYNASLPKSQLRRVH-TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQ 598
Y+A LP ++ RR H F + V+VATIAFGMGIDK +VR + H P+SLEAYYQ
Sbjct: 257 LPYHAGLP-AETRRTHQARFLREEGVVIVATIAFGMGIDKPDVRFVAHLDLPKSLEAYYQ 315
Query: 599 EAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCR 655
E GRAGRDG AD + L + L + +E++ K+ D T+ CR
Sbjct: 316 ETGRAGRDGQAADAWMTYGLGDVVMLRRMIEDSEAEERFKRVEMQKLDSMLGFCETTECR 375
Query: 656 AKILVEYFGEDFSHEKCQLCDVCVD 680
++L+ YFGE + C CD C++
Sbjct: 376 RQVLLNYFGEHLP-KPCGNCDTCLE 399
>gi|224827278|ref|ZP_03700371.1| ATP-dependent DNA helicase RecQ [Pseudogulbenkiania ferrooxidans
2002]
gi|224600491|gb|EEG06681.1| ATP-dependent DNA helicase RecQ [Pseudogulbenkiania ferrooxidans
2002]
Length = 628
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 143/236 (60%), Gaps = 22/236 (9%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
++LL+ FG+ + + Q E ++ + LVL TG GKSLC+QIPALL V +V+SP
Sbjct: 33 HALLQTVFGYPAFRGEQAEIVAHVGGGGNALVLMPTGGGKSLCYQIPALLREGVAIVVSP 92
Query: 222 LISLMHDQCSKLSKHGV-TACFLGSGQPDNK--VEQKALRGMYSIIYVCPETVIRLIKP- 277
LI+LM DQ + LS+ GV AC + PD + ++A G ++YV PE RL+ P
Sbjct: 93 LIALMQDQVATLSELGVAAACLNSATAPDEARDIVRQARAGTLDLLYVAPE---RLLTPR 149
Query: 278 -LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L+ L + R IALFAIDE HCVS WGHDFRP+Y++L +L E F A +P +AL
Sbjct: 150 FLELLNDLR-IALFAIDEAHCVSHWGHDFRPEYQQLGILAERFPA---------VPRIAL 199
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KH-SKTSSRASYKKDF 389
TATA Q R DIL L +++ F L+SF RPNL + V KH +K A ++D+
Sbjct: 200 TATADEQTRADILHYLRLAEARVF-LSSFDRPNLFYQVVEKHNAKKQLLAFIQQDY 254
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 22/209 (10%)
Query: 489 SFERTDLLNKPAER-------LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R +L + E+ L+ +Q+ I+Y +RK A++L G++A
Sbjct: 226 SFDRPNLFYQVVEKHNAKKQLLAFIQQDYPGASGIVYCLSRKRVEDTAQWLVENGIRALP 285
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A L R EF V+VAT+AFGMGIDK +VR + H P+S E +YQE+G
Sbjct: 286 YHAGLGHEVRDRHQREFLREDGVVMVATVAFGMGIDKPDVRFVAHIDLPKSPENFYQESG 345
Query: 602 RAGRDGHLADCVLYANLSSMPTL--------LPSRRSEDQTKQAYRMLSDCFRYGMNTSC 653
RAGRDG A L L+ M L + + + + + ML+ C T+
Sbjct: 346 RAGRDGLPAASWLCYGLNDMVQLTQMIEGSEMAVLQKQVELSKLDAMLAFC-----ETAA 400
Query: 654 CRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
CR + ++ +F E + C CD C++ P
Sbjct: 401 CRRQHILAHFSEQSA--PCGHCDNCLNPP 427
>gi|255542856|ref|XP_002512491.1| DNA helicase hus2, putative [Ricinus communis]
gi|223548452|gb|EEF49943.1| DNA helicase hus2, putative [Ricinus communis]
Length = 586
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 150/259 (57%), Gaps = 31/259 (11%)
Query: 126 KESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAW 185
K+ +PG+ + D + +E++ D+E+ N ++ FG+ S + Q +A A
Sbjct: 168 KKKHPGI------QKDGRPMLSYEELQALDDFEL-ANVVI---FGNMSFRPLQHQACKAS 217
Query: 186 LAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLS-KHGVTACFLG 244
+A DC VL TG GKSLC+Q+PA L V VV+SPL+SL+ DQ L+ K G+ A FL
Sbjct: 218 VAKRDCFVLMPTGGGKSLCYQLPATLKPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLN 277
Query: 245 SGQPDNKV-----EQKALRGMYSIIYVCPETV---IRLIKPLQRLAESRGIALFAIDEVH 296
S Q ++ E + + ++YV PE + + ++ L+ L +A F +DE H
Sbjct: 278 SQQTASQAAAVLQELRKDKPSCKLLYVTPERIAGNLGFLEILKCLHWKGQLAGFVVDEAH 337
Query: 297 CVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSK 356
CVS+WGHDFRPDYR L L++NF D+PL+ALTATAT VREDILK+L +
Sbjct: 338 CVSQWGHDFRPDYRGLGCLKQNFR---------DVPLVALTATATHSVREDILKALRIPN 388
Query: 357 GTKFVL-TSFFRPNLRFSV 374
VL TSF RPNL++ V
Sbjct: 389 A--LVLETSFDRPNLKYEV 405
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 487 DRSFERTDLLNKPAERLSMLQEPLEDGLT----IIYVPTRKETLSIAKYL---CGFGVKA 539
DR + +++ K E L + + L+D I+Y ++ E + ++ +L C +K
Sbjct: 397 DRPNLKYEVIGKTKESLKQVGQLLKDRFKNQCGIVYCLSKNECIEVSNFLNDKCK--IKT 454
Query: 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599
Y+A L Q V ++H + +V ATIAFGMGIDK +VR +IH +S+E+YYQE
Sbjct: 455 VYYHAGLATRQRVEVQRKWHMGEAHIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQE 514
Query: 600 AGRAGRDGHLADCV 613
+GRAGRD A C+
Sbjct: 515 SGRAGRDNLPAACI 528
>gi|417846212|ref|ZP_12492224.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21639]
gi|341953231|gb|EGT79743.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21639]
Length = 627
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 131/216 (60%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK FG+ S + Q+E ++A L D LV+ ATG+GKSLC+Q+PAL + +VISPL
Sbjct: 26 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQVPALCFEGLTLVISPL 85
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A FL S Q +V+ K + G ++YV PE V +
Sbjct: 86 ISLMKDQVDQLQANGIEADFLNSSQTLEQQQRVQNKLISGQLKLLYVSPEKV--MTNSFF 143
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L ++ AIDE HC+S+WGHDFRP+Y +L L+ +F P+MALTAT
Sbjct: 144 QLISYSKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFP---------HAPIMALTAT 194
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A R+DIL L++ +++ SF RPN+R++++
Sbjct: 195 ADHATRQDILTHLNLENPHRYI-GSFDRPNIRYTLE 229
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 152/299 (50%), Gaps = 24/299 (8%)
Query: 479 SPHRDRDTDRSFERTDLLN------KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYL 532
+PHR SF+R ++ KP E+L+ + IIY +R + IA+ L
Sbjct: 211 NPHR---YIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQKGKSGIIYCNSRNKVERIAESL 267
Query: 533 CGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQS 592
GV AAAY+A + + RV +F + ++VVVATIAFGMGI+K NVR I H+ P+S
Sbjct: 268 RNKGVSAAAYHAGMETALRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFIAHFDLPRS 327
Query: 593 LEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGM 649
+E+YYQE GRAGRD A+ VL+ A+ + + +L + Q + L +
Sbjct: 328 IESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETSQRQIEQHKLEAIGEFA- 386
Query: 650 NTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSM 709
+ CR +L+ YFGE C CD+C+D P + L + ++ + Q
Sbjct: 387 ESQTCRRLVLLNYFGEH-RQTPCNNCDICLDPPKKYDGLVDAQKVMSTIYRV--GQCFGA 443
Query: 710 DDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ G+ QK ++R + K+ V I +++S+++ W+ + R + + G++++
Sbjct: 444 HYVIAVLRGMHNQKIIERQHDKLSVYGIGKDKSKEH-------WQSVIRQLIHLGFVKQ 495
>gi|219870290|ref|YP_002474665.1| ATP-dependent DNA helicase RecQ, superfamily II [Haemophilus
parasuis SH0165]
gi|219690494|gb|ACL31717.1| ATP-dependent DNA helicase RecQ, superfamily II [Haemophilus
parasuis SH0165]
Length = 609
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 128/219 (58%), Gaps = 15/219 (6%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K ++L FG+ S + Q E + A L+ DCLV+ TG GKSLC+Q+PAL + +VI
Sbjct: 8 KAETVLHNVFGYQSFRQGQSEVIEAILSGKDCLVIMTTGGGKSLCYQVPALCFEGITLVI 67
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ +L +GV A ++ S Q VEQKA+ G ++Y+ PE V +
Sbjct: 68 SPLISLMKDQVDQLLTNGVEAGYINSTQTIEEQQAVEQKAISGQLKLLYLSPEKV--MTS 125
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
+ I+L A+DE HCVS+WGHDFRP+Y L LR+ F +IPL+AL
Sbjct: 126 NFFQFISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGGLRKTFP---------NIPLVAL 176
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
TATA R DI+ L + + L SF RPN+R++V+
Sbjct: 177 TATADPTTRFDIIHHLKLEDPHTY-LGSFDRPNIRYTVQ 214
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 137/275 (49%), Gaps = 17/275 (6%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP ++L + I+Y +RK+ + + L Y+A + Q V
Sbjct: 218 KPVDQLIKFISSQQGKSGIVYCNSRKKVEELTEKLSSHRFSVMGYHAGMTMQQRETVQNA 277
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F + +++VVAT+AFGMGI+K NVR ++H+ P+S+EAYYQE GRAGRD A+ VL+ +
Sbjct: 278 FQRDNIQIVVATVAFGMGINKSNVRFVVHFDLPRSIEAYYQETGRAGRDDLPAEAVLFYD 337
Query: 618 LSSM----PTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
+ LL SE + + +++ + CR +L+ YFGE CQ
Sbjct: 338 PADYGWLHKVLLEKPESEQRQIEQHKL--QAIGAFAESQTCRRLVLLNYFGET-RQVACQ 394
Query: 674 LCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMF 733
CD+C+D PP+ + +A +M VI Q + + G+ +QK + + +
Sbjct: 395 NCDICLD-PPKKYDGLVDAQKVMSVIYR-TGQRFGLHHIIAVLRGLNQQKIREYQHDTLS 452
Query: 734 VSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
V I +++SQ+Y W + R + + G+IR+
Sbjct: 453 VYGIGKDKSQEY-------WISVTRQLIHLGFIRQ 480
>gi|424664440|ref|ZP_18101476.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 616]
gi|404576022|gb|EKA80763.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 616]
Length = 601
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 127/215 (59%), Gaps = 16/215 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + ++ D LVL TG GKS+C+Q+PALL +VISPLIS
Sbjct: 5 LKIYFGYDSFRPLQEEIIRNLMSKRDALVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S +++ + + + G ++Y+ PE +L+ L
Sbjct: 65 LMKDQVESLCANGIPAGALNSSNDESENANLRRACISGKLKLLYISPE---KLLSEADYL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
I+LFA+DE HC+S+WGHDFRP+Y R+ LR F +IP++ALTATA
Sbjct: 122 LRDMTISLFAVDEAHCISQWGHDFRPEYARMGFLRTQFP---------NIPMIALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
REDI++ L + + F+ +SF RPNL SVK
Sbjct: 173 KITREDIVRQLQLKQPEIFI-SSFDRPNLSLSVKR 206
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 106/191 (55%), Gaps = 3/191 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L Q F +++EVV ATIAFGMG
Sbjct: 230 IIYCMSRSKTETVAQMLQKHGIRCGVYHAGLSARQRDEAQDNFINDRIEVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L + L +Q
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTILFYSLGDLILLTKFATESNQQN 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
L+ +Y CR +IL+ YFGE + E C CDVC + PPE +
Sbjct: 350 INLEKLNRMQQYA-EADICRRRILLSYFGET-ATEDCGNCDVCRN-PPERFDGTVIVQKA 406
Query: 696 MQVIAAYNEQS 706
+ IA N+Q+
Sbjct: 407 LSAIARTNQQA 417
>gi|212693848|ref|ZP_03301976.1| hypothetical protein BACDOR_03370 [Bacteroides dorei DSM 17855]
gi|237708472|ref|ZP_04538953.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 9_1_42FAA]
gi|212663600|gb|EEB24174.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei DSM 17855]
gi|229457401|gb|EEO63122.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 9_1_42FAA]
Length = 605
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 137/240 (57%), Gaps = 22/240 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q++ + LA D LVL TG GKS+C+Q+PALL +V+SPLIS
Sbjct: 5 LKNYFGYDSFRPLQQDIIQNILAQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + ++ L+G ++Y+ PE RL+ L
Sbjct: 65 LMKDQVESLQANGIAARALNSSNNETENINLRRECLQGKIKLLYISPE---RLLIETNFL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+ I+LFAIDE HC+S+WGHDFRP+Y +L VLR F +P++ALTATA
Sbjct: 122 LKDIQISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPK---------VPIVALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKK 401
R+DI + L + K K ++SF RPNL VK R +KD + I + +K K
Sbjct: 173 KITRKDIAQQLVL-KDPKIFISSFDRPNLSLEVK------RGYQQKDKARTILEFIEKHK 225
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 119/216 (55%), Gaps = 12/216 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A L G++A Y+A L + +F ++++VV ATIAFGMG
Sbjct: 230 IIYCMSRSKTENVAAMLMKQGIRATVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L + L Q +
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMESDTLLFYSLGDLVMLSKFATESSQQE 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
L +Y + CR +IL+ YFGE H+ C CDVC + PPE + + I+
Sbjct: 350 INLEKLHRMQQYA-ESDICRRRILLNYFGETMDHD-CGNCDVCRN-PPE----RFDGTII 402
Query: 696 MQ----VIAAYNEQSNSMDDDDGIYSGIKKQKFMDR 727
+Q IA N+Q + D I G Q+ +D+
Sbjct: 403 VQKALSAIARTNQQIGTHMLID-ILKGSANQELIDK 437
>gi|427388684|ref|ZP_18884382.1| ATP-dependent DNA helicase RecQ [Bacteroides oleiciplenus YIT
12058]
gi|425724657|gb|EKU87532.1| ATP-dependent DNA helicase RecQ [Bacteroides oleiciplenus YIT
12058]
Length = 611
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 132/222 (59%), Gaps = 20/222 (9%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
+K+ LK++FG+ + + Q++ + L D LVL TG GKS+C+Q+PALL VV
Sbjct: 8 LKMIQTLKRYFGYDTFRPLQEDIIRTLLDGRDALVLMPTGGGKSICYQLPALLCEGTAVV 67
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVIR 273
+SPLISLM DQ L +G+ A L S +++ E ALR G ++Y+ PE +
Sbjct: 68 VSPLISLMKDQVEALCANGIAAGALNSS--NDETENAALRRSCMEGKLKLLYISPE---K 122
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
LI L I+LFAIDE HC+S+WGHDFRP+Y ++ + E F +IP+
Sbjct: 123 LIAEANYLLRDMHISLFAIDEAHCISQWGHDFRPEYAQMGFMHEMFP---------NIPI 173
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+ALTATA R DI++ LH+++ K ++SF RPNL +VK
Sbjct: 174 IALTATADKITRVDIVRQLHLNQ-PKIFISSFDRPNLSLTVK 214
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 102/176 (57%), Gaps = 4/176 (2%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566
+ P E G IIY +R +T ++A+ L G++ A Y+A L +Q +F +++++V
Sbjct: 232 RHPGESG--IIYCMSRSKTETVAQMLQKQGLRVAVYHAGLSSAQRDEAQNDFINDRVQIV 289
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLP 626
ATIAFGMGIDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L+ + L
Sbjct: 290 CATIAFGMGIDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTMLFYSLADLILLTK 349
Query: 627 SRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
Q L +Y CR +IL+ YFGE + E C CDVC + P
Sbjct: 350 FATESGQQGINLEKLQRMQQYA-EADVCRRRILLSYFGES-TTEDCGNCDVCKNPP 403
>gi|91791699|ref|YP_561350.1| ATP-dependent DNA helicase RecQ [Shewanella denitrificans OS217]
gi|91713701|gb|ABE53627.1| ATP-dependent DNA helicase RecQ [Shewanella denitrificans OS217]
Length = 613
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 138/223 (61%), Gaps = 22/223 (9%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
E ++++ L++ FG+ S + Q+E + LA D LV+ TG GKS+C+Q+PALL + +
Sbjct: 16 EDELSARLQQVFGYRSFREGQREVMERTLAGEDTLVIMPTGGGKSICYQLPALLFQGLTI 75
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS----IIYVCPETVIR 273
V+SPLISLM DQ L + GV A +L S QP +V LR ++S ++YV PE ++R
Sbjct: 76 VVSPLISLMKDQVDSLIQTGVPAAYLNSSQP-REVSMNVLRQLHSGEIKLLYVSPERLLR 134
Query: 274 --LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
I+ LQ L ++LFA+DE HC+S+WGHDFRP+Y L L++ F +
Sbjct: 135 EDFIERLQHLH----VSLFAVDEAHCISQWGHDFRPEYAELGRLKQLFP---------HV 181
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
PLMALTATA R+ I + L++ +L+SF RPN+R++V
Sbjct: 182 PLMALTATADQATRKSICERLNIEPFC--LLSSFDRPNIRYTV 222
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 126/220 (57%), Gaps = 12/220 (5%)
Query: 489 SFERTDLLNKPAERL---SMLQEPL--EDGLT-IIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ AE+L S L++ + + G + IIY +R+ +A+ L G+KA AY
Sbjct: 212 SFDRPNIRYTVAEKLNAASQLKQFIASQSGNSGIIYCSSRRRVDEVAERLRLQGLKAEAY 271
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A + + V +F +++L++VVAT+AFGMGI+K NVR ++HY P+S+EAYYQE GR
Sbjct: 272 HAGRSQEERGDVQDKFLKDQLDIVVATVAFGMGINKSNVRFVVHYDIPKSVEAYYQETGR 331
Query: 603 AGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A+ + A++ + L+ Q + + L + CR ++L
Sbjct: 332 AGRDGLDAEAYMLFDPADIGRVRHLIEQSEPGPQQQVEFHKLHTMAAFA-EAQTCRRQVL 390
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
+ YF E S + C CD+C++ PP+ + E+A ++ +
Sbjct: 391 LHYFDESAS-KPCGNCDICIN-PPKRYDGSEDAKKVLSCV 428
>gi|410670594|ref|YP_006922965.1| ATP-dependent DNA helicase RecQ [Methanolobus psychrophilus R15]
gi|409169722|gb|AFV23597.1| ATP-dependent DNA helicase RecQ [Methanolobus psychrophilus R15]
Length = 705
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 133/221 (60%), Gaps = 19/221 (8%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+K+FG+S + QK+ + L D VL TG GKSLC+Q+PALL + VVISPLIS
Sbjct: 5 LQKYFGYSEFRPLQKDIIQDVLDGKDTFVLMPTGGGKSLCYQLPALLMDGLTVVISPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL-----RGMYSIIYVCPETVIRLIKPLQ 279
LM DQ L +GV A FL S Q N E + + I+Y+ PE + + L
Sbjct: 65 LMKDQVDSLRANGVNAAFLNSTQ--NYTESRKICDDIATNDIKILYMAPER-LAMSGTLS 121
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ +++ ++LFAIDE HC+S+WGHDFRP+YR+LS+L++ F +P++ALTAT
Sbjct: 122 MITKAK-VSLFAIDESHCISEWGHDFRPEYRKLSMLKKKFPK---------VPIIALTAT 171
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380
AT +VRED L L ++ ++ SF R NL + ++ K +
Sbjct: 172 ATPKVREDTLNQLGLTNPKTYI-ASFNRSNLLYEIRPKKET 211
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 108/193 (55%), Gaps = 5/193 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK ++ L G A Y+A L +Q R F ++K +++VATIAFGMG
Sbjct: 228 IIYCQSRKNVDTVTAKLRKAGFNALPYHAGLSDTQRGRNQEAFIKDKADIIVATIAFGMG 287
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
IDK NVR +IHY P++LE YYQE GR GRDG +C+L+ + + + + ++
Sbjct: 288 IDKPNVRFVIHYDLPKNLEGYYQETGRGGRDGLECECILFFSHGDRYRIEYFVKQKGRKE 347
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ A + L D Y ++T+ CR K L+ YFGE+ + C CD C+ P E + EEA
Sbjct: 348 ERDIALKQLQDMVNYCVSTT-CRRKALLSYFGEELEEDNCGGCDACLR-PKETVDGTEEA 405
Query: 693 NILMQVIAAYNEQ 705
+L+ + E+
Sbjct: 406 KLLISCVGELGER 418
>gi|296472378|tpg|DAA14493.1| TPA: Werner syndrome [Bos taurus]
Length = 744
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 124/211 (58%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D +V+ TG GKSLCFQ P + G + +VISPLI
Sbjct: 533 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMTTGYGKSLCFQYPPVYAGGIGLVISPLI 592
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q N VE L G Y I+Y+ PE ++ L++L
Sbjct: 593 SLMEDQVLQLEISSIPACFLGSAQSKNVVEDIKL-GKYRIVYLTPEFCSGNLELLRQLEA 651
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ GI L A+DE HC+S+WGHDFR +R L L+ F +P++ALTATA
Sbjct: 652 NIGITLIAVDEAHCISEWGHDFRNSFRDLGCLKAEFPK---------VPIVALTATAGSS 702
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
VREDI+ L++ K + T F RPNL V
Sbjct: 703 VREDIVCCLNL-KDPQITCTGFDRPNLYLEV 732
>gi|423298844|ref|ZP_17276869.1| ATP-dependent DNA helicase RecQ [Bacteroides finegoldii CL09T03C10]
gi|408474193|gb|EKJ92712.1| ATP-dependent DNA helicase RecQ [Bacteroides finegoldii CL09T03C10]
Length = 601
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 128/216 (59%), Gaps = 20/216 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + L D LVL TG GKS+C+Q+PALL+ +V+SPLIS
Sbjct: 5 LKTYFGYDSFRPLQEEIIRHILNKQDALVLMPTGGGKSICYQLPALLSEGTAIVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVIRLIKPLQ 279
LM DQ L +G+ A L S +++ E LR G ++Y+ PE +L+
Sbjct: 65 LMKDQVEGLQANGIAAGALNSS--NDETENANLRRSCVAGKLKLLYISPE---KLLAEKD 119
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L I+LFAIDE HC+S+WGHDFRP+Y ++ VL + F +P++ALTAT
Sbjct: 120 YLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFP---------QVPIIALTAT 170
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A REDI++ LH+ + F+ +SF RPN+ +VK
Sbjct: 171 ADKITREDIIRQLHLIRPRTFI-SSFDRPNISLTVK 205
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 98/169 (57%), Gaps = 3/169 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L Q +F ++++VV ATIAFGMG
Sbjct: 230 IIYCMSRSKTETVAQMLLKQGIRCGVYHAGLSAQQRDETQDDFINDRIQVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D VL+ +L + L Q K
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTVLFYSLGDLILLTKFASESSQQK 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
L +Y CR +IL+ YFGE + E C CDVC + PP+
Sbjct: 350 INLEKLQRMQQYA-EADICRRRILLSYFGET-ATEDCGNCDVCKN-PPQ 395
>gi|147919945|ref|YP_686301.1| ATP-dependent DNA helicase [Methanocella arvoryzae MRE50]
gi|110621697|emb|CAJ36975.1| ATP-dependent DNA helicase [Methanocella arvoryzae MRE50]
Length = 605
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 130/220 (59%), Gaps = 15/220 (6%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+++FG+S+ + FQ+E ++ L D L + ATG GKSLC+Q+PAL++G + +V+SPLIS
Sbjct: 14 LERYFGYSTFRPFQEEIVTDVLEGRDVLAIIATGGGKSLCYQLPALVSGGLTIVVSPLIS 73
Query: 225 LMHDQCSKLSKHGVTACFLGSGQ---PDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L ++A L S +E + L G ++Y+ PE + + +
Sbjct: 74 LMKDQVDDLLARNISAATLNSSMELWEIRSIEDQLLGGKIKVLYISPERITQ--DSCLQF 131
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
E + L AIDE HC+S WGH FRPDYRRLS+L+ F +P++ALTA+A
Sbjct: 132 LEKLDVKLIAIDEAHCISMWGHQFRPDYRRLSLLKSKFP---------KVPMIALTASAI 182
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
+VREDI L + K+ L SF R NLR+ V+ K ++
Sbjct: 183 PEVREDIASQLKLVSPKKY-LGSFNRINLRYEVREKKDAT 221
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 105/189 (55%), Gaps = 4/189 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y RK T +A+ L G+KA Y+A LP + +F + +EVV AT+AFGMG
Sbjct: 237 IVYCLARKTTEELAEKLRRAGIKALPYHADLPDTVRSATQEKFVRDDVEVVCATVAFGMG 296
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
IDK +VR +IHY P++LEAYYQE GRAGRDG +DC+++ A+ M LL ++
Sbjct: 297 IDKPDVRYVIHYDMPKNLEAYYQETGRAGRDGEASDCIMFYSPADALKMRGLLEKEYTDY 356
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ R T CR K L+ YFGE++ C CD C+ P + + ++ A
Sbjct: 357 HLSRVAMKKWQAMRDFCETRLCRRKYLLSYFGEEYDDPACDGCDNCLH-PKDTIDGRDIA 415
Query: 693 NILMQVIAA 701
N ++ + A
Sbjct: 416 NKIVTCVTA 424
>gi|430762471|ref|YP_007218328.1| ATP-dependent DNA helicase RecQ [Thioalkalivibrio nitratireducens
DSM 14787]
gi|430012095|gb|AGA34847.1| ATP-dependent DNA helicase RecQ [Thioalkalivibrio nitratireducens
DSM 14787]
Length = 642
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 130/217 (59%), Gaps = 15/217 (6%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L + FG+S + Q+E + D LVL TG GKSLC+QIPAL+ VVISPLI
Sbjct: 41 ILSEVFGYSGFRGRQREIIDCVAGGGDALVLMPTGGGKSLCYQIPALIRPGCGVVISPLI 100
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LM DQ + L + GV A L S + + + E+ L G ++Y+ PE ++ L + L
Sbjct: 101 ALMQDQVAALRQSGVRAAALNSAESLARNQEAERALLDGRLDLLYIAPERLM-LPRTLDL 159
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
LA +R +ALFAIDE HCVS+WGHDFRP+Y +LS+L E F +P +ALTATA
Sbjct: 160 LARAR-VALFAIDEAHCVSQWGHDFRPEYIQLSLLAERFPG---------VPRLALTATA 209
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHS 377
R +I+ L + + +FV + F RPN+R+ + S
Sbjct: 210 DAPTRREIVTRLGLERARQFV-SRFDRPNIRYRISQS 245
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 105/202 (51%), Gaps = 7/202 (3%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566
+ P E G I+Y +RK +IA +L G++A Y+A L ++ R F + ++
Sbjct: 263 EHPGEAG--IVYCLSRKRVEAIADWLAAQGLEALPYHAGLSVAERDRNQKRFLTGEGVIM 320
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL-- 624
VATIAFGMGIDK NVR + H P+S+EAYYQE GRAGRDG AD + L + TL
Sbjct: 321 VATIAFGMGIDKPNVRFVAHLNLPKSIEAYYQETGRAGRDGLPADAWMLYGLQDVITLRQ 380
Query: 625 -LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPP 683
L ++D K+ R + + CR + L+ YFG+D C CD C++ PP
Sbjct: 381 MLDQSNADDGHKRVERQKLEAMLGLCELTSCRRQALLAYFGDDLD-SPCGNCDTCLE-PP 438
Query: 684 EMKNLKEEANILMQVIAAYNEQ 705
+ E A + + E+
Sbjct: 439 ATWDATEPARKALSCVYRTGER 460
>gi|119913638|ref|XP_613809.3| PREDICTED: Bloom syndrome protein [Bos taurus]
Length = 1430
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 132/219 (60%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 671 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 730
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 731 SLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLI 790
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFRPDY+R+++LR+ F + +P+MA
Sbjct: 791 STLENLYERKLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQKFPS---------VPVMA 841
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 842 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 879
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 97/175 (55%), Gaps = 12/175 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVVATIAFGM 574
IIY +R+E ++A+ L G+ A AY+A L S V H +++ +V+ ATIAFGM
Sbjct: 905 IIYCLSRRECDTMAETLQNDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGM 964
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL----LPSRRS 630
GIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L L +
Sbjct: 965 GIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCILFYTYHDVTRLKRLILMEKDG 1024
Query: 631 EDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGE-DFSHEKCQL-----CDVC 678
T++ + L Y N + CR L+ YFGE +F+ C+ CD C
Sbjct: 1025 NRHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENEFNPHFCKKYPDVSCDNC 1079
>gi|443244229|ref|YP_007377454.1| ATP-dependent DNA helicase [Nonlabens dokdonensis DSW-6]
gi|442801628|gb|AGC77433.1| ATP-dependent DNA helicase [Nonlabens dokdonensis DSW-6]
Length = 730
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 132/227 (58%), Gaps = 17/227 (7%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
+D ++ + LKK+FG + QK+ +++ L DC V+ TG GKSLC+Q+PAL+
Sbjct: 2 ADTQIGLEENLKKYFGFEQFRGLQKQVITSLLNKEDCFVIMPTGGGKSLCYQLPALMQEG 61
Query: 215 VVVVISPLISLMHDQCSKL---SKHGVTACFLGSGQPDNKVEQ---KALRGMYSIIYVCP 268
+V+SPLI+LM +Q + S H A L S V+Q G+ ++YV P
Sbjct: 62 TAIVVSPLIALMKNQVDAIRGVSDHDGVAHVLNSSLSKTDVQQVKDDIENGITKLLYVAP 121
Query: 269 ETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
E++ + + + + I+ A+DE HC+S+WGHDFRP+YR L + + G+
Sbjct: 122 ESLTK--EEYVDFLKQQKISFLAVDEAHCISEWGHDFRPEYRNLRKIIDRIGS------- 172
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
DIP++ LTATAT +V+EDILK+L ++ T F SF RPNL + V+
Sbjct: 173 -DIPIIGLTATATPKVQEDILKNLQITDATTF-QASFNRPNLFYEVR 217
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 104/199 (52%), Gaps = 5/199 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK +A+ L G+KA Y+A L + F +VVVATIAFGMG
Sbjct: 240 IVYCLSRKRVEELAQVLQVNGIKAVPYHAGLDAKTRVKHQDMFLMEDTDVVVATIAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--LPSRRSEDQ 633
IDK +VR +IH+ P+S+E+YYQE GRAGRDG C+ Y + + L S + +
Sbjct: 300 IDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMSGKPIAE 359
Query: 634 TKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDV--CVDGPPEMKNLKEE 691
+ + +L + Y TS R + ++ YFGE+F + D+ + P K EE
Sbjct: 360 QEIGHALLQEMVGYS-ETSMSRRQYILHYFGEEFDPATGEGGDMDDNMRNPKPQKEAVEE 418
Query: 692 ANILMQVIAAYNEQSNSMD 710
L++VI A E+ S D
Sbjct: 419 VKKLIKVIDAAGERYKSKD 437
>gi|440913178|gb|ELR62661.1| Bloom syndrome protein [Bos grunniens mutus]
Length = 1430
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 132/219 (60%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 671 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 730
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 731 SLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLI 790
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFRPDY+R+++LR+ F + +P+MA
Sbjct: 791 STLENLYERKLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQKFPS---------VPVMA 841
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 842 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 879
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 97/175 (55%), Gaps = 12/175 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVVATIAFGM 574
IIY +R+E ++A+ L G+ A AY+A L S V H +++ +V+ ATIAFGM
Sbjct: 905 IIYCLSRRECDTMAETLQNDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGM 964
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL----LPSRRS 630
GIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L L +
Sbjct: 965 GIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCILFYTYHDVTRLKRLILMEKDG 1024
Query: 631 EDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGE-DFSHEKCQL-----CDVC 678
T++ + L Y N + CR L+ YFGE +F+ C+ CD C
Sbjct: 1025 NRHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENEFNPHFCKKYPDVSCDNC 1079
>gi|421746369|ref|ZP_16184170.1| ATP-dependent DNA helicase RecQ [Cupriavidus necator HPC(L)]
gi|409775096|gb|EKN56626.1| ATP-dependent DNA helicase RecQ [Cupriavidus necator HPC(L)]
Length = 619
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 131/220 (59%), Gaps = 21/220 (9%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVV 218
++LK FG+ + + Q E + DCLVL TG GKSLC+QIPALL + V +V
Sbjct: 6 AILKDVFGYHAFRGRQAEIIEHVAEGGDCLVLMPTGGGKSLCYQIPALLRQRAGHGVGIV 65
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLI 275
+SPLI+LM DQ + L++ GV A L S G + VE+ L G I+YV PE RL+
Sbjct: 66 VSPLIALMQDQVAALTEAGVRAAVLNSTLTGAQASAVERDLLAGRLEILYVAPE---RLM 122
Query: 276 KP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
P Q L + + LFAIDE HCVS+WGHDFRP+Y +LSVL E F +P +
Sbjct: 123 TPRFQDLLDRTRVGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------QVPRI 173
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA R++I++ L + F L+SF RPN+R+ +
Sbjct: 174 ALTATADDVTRQEIVERLALDDARVF-LSSFDRPNIRYRI 212
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 6/187 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A +L G G+ A Y+A + + ++ F + + V+VATIAFGMG
Sbjct: 241 IVYCLSRRKVEETADWLRGHGINALPYHAGMEAAVRQQHQARFRDEEGLVMVATIAFGMG 300
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM---PTLLPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG A+ + L + ++ +++
Sbjct: 301 IDKPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGDVVQQKRMIDESEADE 360
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
K+ D T+ CR ++ YFGE + E C CD C++ PP + EA
Sbjct: 361 THKRVSSAKLDALLGLCETAGCRRVRILAYFGE--TSEPCGNCDTCLE-PPATWDGTREA 417
Query: 693 NILMQVI 699
+ + +
Sbjct: 418 QMALSCV 424
>gi|383125120|ref|ZP_09945776.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 1_1_6]
gi|382983453|gb|EIC72782.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 1_1_6]
Length = 620
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 126/214 (58%), Gaps = 16/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + L D LVL TG GKS+C+Q+PALL+ VV+SPLIS
Sbjct: 24 LKSYFGYDSFRPLQEEIIRHLLNKQDSLVLMPTGGGKSICYQLPALLSEGTAVVVSPLIS 83
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + + + G ++Y+ PE +LI L
Sbjct: 84 LMKDQVETLQANGIAAGALNSSNDETENANLRRACIEGRLKLLYISPE---KLIAEKDYL 140
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
I+LFAIDE HC+S+WGHDFRP+Y ++ +L + F +P++ALTATA
Sbjct: 141 LRDMSISLFAIDEAHCISQWGHDFRPEYTQMGMLHQQFP---------QVPIIALTATAD 191
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
REDI++ LH+ + F+ +SF RPN+ VK
Sbjct: 192 KITREDIIRQLHLIQPRTFI-SSFDRPNISLDVK 224
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 95/167 (56%), Gaps = 2/167 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L +F ++++VV ATIAFGMG
Sbjct: 249 IIYCMSRNKTETVAQMLQKQGIRCGVYHAGLSPQHRDETQNDFINDRIQVVCATIAFGMG 308
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D VL+ +L + L +Q
Sbjct: 309 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTVLFYSLGDLILLTKFATESNQQT 368
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
L +Y CR +IL+ YFGE S E C CDVC + P
Sbjct: 369 INLEKLQRMQQYA-EADICRRRILLSYFGET-STEDCGNCDVCKNPP 413
>gi|298387431|ref|ZP_06996983.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 1_1_14]
gi|298259638|gb|EFI02510.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 1_1_14]
Length = 601
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 126/214 (58%), Gaps = 16/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + L D LVL TG GKS+C+Q+PALL+ VV+SPLIS
Sbjct: 5 LKSYFGYDSFRPLQEEIIRHLLNKQDSLVLMPTGGGKSICYQLPALLSEGTAVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + + + G ++Y+ PE +LI L
Sbjct: 65 LMKDQVETLQANGIAAGALNSSNDETENANLRRACIEGRLKLLYISPE---KLIAEKDYL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
I+LFAIDE HC+S+WGHDFRP+Y ++ +L + F +P++ALTATA
Sbjct: 122 LRDMSISLFAIDEAHCISQWGHDFRPEYTQMGMLHQQFP---------QVPIIALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
REDI++ LH+ + F+ +SF RPN+ VK
Sbjct: 173 KITREDIIRQLHLIQPRTFI-SSFDRPNISLDVK 205
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 95/167 (56%), Gaps = 2/167 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L +F ++++VV ATIAFGMG
Sbjct: 230 IIYCMSRNKTETVAQMLQKQGIRCGVYHAGLSPQHRDETQNDFINDRIQVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D VL+ +L + L +Q
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTVLFYSLGDLILLTKFATESNQQT 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
L +Y CR +IL+ YFGE S E C CDVC + P
Sbjct: 350 INLEKLQRMQQYA-EADICRRRILLSYFGET-STEDCGNCDVCKNPP 394
>gi|297307109|ref|NP_001137329.2| Werner syndrome ATP-dependent helicase [Bos taurus]
Length = 1404
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 124/211 (58%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D +V+ TG GKSLCFQ P + G + +VISPLI
Sbjct: 506 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMTTGYGKSLCFQYPPVYAGGIGLVISPLI 565
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q N VE L G Y I+Y+ PE ++ L++L
Sbjct: 566 SLMEDQVLQLEISSIPACFLGSAQSKNVVEDIKL-GKYRIVYLTPEFCSGNLELLRQLEA 624
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ GI L A+DE HC+S+WGHDFR +R L L+ F +P++ALTATA
Sbjct: 625 NIGITLIAVDEAHCISEWGHDFRNSFRDLGCLKAEFPK---------VPIVALTATAGSS 675
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
VREDI+ L++ K + T F RPNL V
Sbjct: 676 VREDIVCCLNL-KDPQITCTGFDRPNLYLEV 705
Score = 112 bits (280), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 96/155 (61%), Gaps = 4/155 (2%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A L + ++VH F ++++ V+AT+A
Sbjct: 731 EGPTIIYCPSRKMTEQVTAELKKLKLACGTYHAGLSINLRKQVHHRFMRDEIQCVIATVA 790
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ A+++ LL
Sbjct: 791 FGMGINKADIRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADMNLNRCLLSEI 850
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYF 663
R+E +M+ +Y + +S CR +I++ +F
Sbjct: 851 RNEKFRLYKLKMMGKMEKY-LYSSKCRRQIILSHF 884
>gi|380011350|ref|XP_003689771.1| PREDICTED: Bloom syndrome protein homolog [Apis florea]
Length = 1167
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 142/253 (56%), Gaps = 28/253 (11%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ ++ FG S + Q +A++A + DC +L TG GKSLC+Q+PALL V +VISPL
Sbjct: 476 IFRQKFGLYSFRPNQLQAINAAILGFDCFILMPTGGGKSLCYQLPALLLPGVTIVISPLK 535
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETV---IRLI 275
SL+ DQ KL+ + A + G D++ E ++YV PE + +
Sbjct: 536 SLILDQVQKLTSLDIPATHMSGGITDSQALGIYRELSKKDPALKLLYVTPEKISASPKFC 595
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L L R +A F IDE HCVS+WGHDFRPDY++L+ LREN+ +P++
Sbjct: 596 NILSSLYNRRLLARFVIDEAHCVSQWGHDFRPDYKKLNCLRENYPK---------VPVIV 646
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSS-------RASYK 386
LTATAT +VR DIL L ++ K+ ++SF RPNLR+S+ K SK S + YK
Sbjct: 647 LTATATPRVRSDILHQLRIT-TPKWFMSSFNRPNLRYSIIAKKSKNCSDEVIAMIKTKYK 705
Query: 387 KDFCQLIDIYTKK 399
D C ++ ++K
Sbjct: 706 ND-CGIVYCLSRK 717
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 116/225 (51%), Gaps = 28/225 (12%)
Query: 501 ERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE 560
E ++M++ ++ I+Y +RK+ A ++ +KA +Y+A L + + +
Sbjct: 695 EVIAMIKTKYKNDCGIVYCLSRKDCDDYAMHMRKNSIKALSYHAGLTDNNRSDIQGRWIS 754
Query: 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
+++VV ATIAFGMGIDK NVR +IH P+S+E YYQE+GRAGRDG ADC+L+ N +
Sbjct: 755 EEIKVVCATIAFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAGRDGENADCILFYNYTD 814
Query: 621 M-------------PTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDF 667
M PT++ + ++M+S C N + CR + YFGE F
Sbjct: 815 MHRIRKMIELDNSNPTIIKT-----HIDNLFKMVSFC----ENKTDCRRTQQLNYFGEIF 865
Query: 668 SHEKC-----QLCDVCVDGPP-EMKNLKEEANILMQVIAAYNEQS 706
E+C CD C M + ++A +M+ + N Q+
Sbjct: 866 DREQCIANKVTSCDNCRSKDTITMLDATDDAKHIMKAVRDINNQT 910
>gi|297487976|ref|XP_002696629.1| PREDICTED: Bloom syndrome protein [Bos taurus]
gi|296475516|tpg|DAA17631.1| TPA: Bloom syndrome, RecQ helicase-like [Bos taurus]
Length = 1430
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 132/219 (60%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 671 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 730
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 731 SLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLI 790
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFRPDY+R+++LR+ F + +P+MA
Sbjct: 791 STLENLYERKLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQKFPS---------VPVMA 841
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 842 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 879
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 97/175 (55%), Gaps = 12/175 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVVATIAFGM 574
IIY +R+E ++A+ L G+ A AY+A L S V H +++ +V+ ATIAFGM
Sbjct: 905 IIYCLSRRECDTMAETLQNDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGM 964
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL----LPSRRS 630
GIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L L +
Sbjct: 965 GIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCILFYTYHDVTRLKRLILMEKDG 1024
Query: 631 EDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGE-DFSHEKCQL-----CDVC 678
T++ + L Y N + CR L+ YFGE +F+ C+ CD C
Sbjct: 1025 NRHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENEFNPHFCKKYPDVSCDNC 1079
>gi|29347258|ref|NP_810761.1| ATP-dependent DNA helicase RecQ [Bacteroides thetaiotaomicron
VPI-5482]
gi|29339157|gb|AAO76955.1| ATP-dependent DNA helicase recQ [Bacteroides thetaiotaomicron
VPI-5482]
Length = 620
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 126/214 (58%), Gaps = 16/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + L D LVL TG GKS+C+Q+PALL+ VV+SPLIS
Sbjct: 24 LKSYFGYDSFRPLQEEIIRHLLNKQDSLVLMPTGGGKSICYQLPALLSEGTAVVVSPLIS 83
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + + + G ++Y+ PE +LI L
Sbjct: 84 LMKDQVETLQANGIAAGALNSSNDETENANLRRACIEGRLKLLYISPE---KLIAEKDYL 140
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
I+LFAIDE HC+S+WGHDFRP+Y ++ +L + F +P++ALTATA
Sbjct: 141 LRDMSISLFAIDEAHCISQWGHDFRPEYTQMGMLHQQFP---------QVPIIALTATAD 191
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
REDI++ LH+ + F+ +SF RPN+ VK
Sbjct: 192 KITREDIIRQLHLIQPRTFI-SSFDRPNISLDVK 224
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 95/167 (56%), Gaps = 2/167 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L +F ++++VV ATIAFGMG
Sbjct: 249 IIYCMSRNKTETVAQMLQKQGIRCGVYHAGLSPQHRDETQNDFINDRIQVVCATIAFGMG 308
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D VL+ +L + L +Q
Sbjct: 309 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTVLFYSLGDLILLTKFATESNQQT 368
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
L +Y CR +IL+ YFGE S E C CDVC + P
Sbjct: 369 INLEKLQRMQQYA-EADICRRRILLSYFGET-STEDCGNCDVCKNPP 413
>gi|357008934|ref|ZP_09073933.1| putative ATP-dependent DNA helicase [Paenibacillus elgii B69]
Length = 686
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/286 (37%), Positives = 150/286 (52%), Gaps = 46/286 (16%)
Query: 95 SGNRQKRGKRNVGDDVSVSGSVVSPSIVEEQKESYPGMDCNLKAESDSLAVSCPKEVEIG 154
+GN + R +R V D+ + P V+ Q PG AE+
Sbjct: 59 AGNAEFRSRRPVQTDL-FEAPIRRPQAVKRQ----PGQPIGTMAEA-------------- 99
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
LL+K++G+ ++ QK+ + + L+ D L + TG GKS+C+Q+PAL+
Sbjct: 100 -------QELLRKYYGYPDFRDGQKQVIESLLSGRDTLGIMPTGGGKSICYQVPALMMDG 152
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETV 271
+V+SPLISLM DQ L GV A ++ S +VE +KA RG Y ++YV PE +
Sbjct: 153 TTIVVSPLISLMKDQVDGLDSIGVPAAYINSSLSYAQVEMRIRKAERGEYKLLYVAPERL 212
Query: 272 --IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKF 329
R ++ L L + + A+DE HCVS+WGHDFRP Y R+ N L S
Sbjct: 213 ESERFLELLSGLV----VPMVAVDEAHCVSQWGHDFRPSYMRI---------NELVSHLP 259
Query: 330 DIPLM-ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
D PL+ A TATAT QVREDI+K L +S+ FV T F R NL FSV
Sbjct: 260 DRPLLAAFTATATDQVREDIVKHLKLSEPQVFV-TGFARENLSFSV 304
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 112/215 (52%), Gaps = 7/215 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y TRKE + +YL GV A Y+A L + F +++ V+VA+ AFGMG
Sbjct: 327 IVYAATRKEVDQLCEYLLRQGVAAGKYHAGLTDKERADAQERFLYDEVRVMVASNAFGMG 386
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS--MPTLLPSRRSEDQ 633
IDK NVR ++H+ P+++EAYYQEAGRAGRDG +DC+L + + L + D
Sbjct: 387 IDKSNVRYVVHFNMPKNMEAYYQEAGRAGRDGEPSDCMLLFSPQDIHIQKFLIEQSVSDP 446
Query: 634 TKQA--YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEE 691
+QA YR L Y +T C + +V YFG + + E C C CV E+ ++ E
Sbjct: 447 ERQAQEYRRLQQMADY-CHTPQCLQRYIVRYFGGE-TEEDCGQCSNCVSPDMELTDITLE 504
Query: 692 ANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMD 726
A + + E+ M + G + +K +D
Sbjct: 505 AQQIFSCVKRMRERFG-MTLVASVLKGSRNKKVLD 538
>gi|332240842|ref|XP_003269596.1| PREDICTED: Werner syndrome ATP-dependent helicase [Nomascus
leucogenys]
Length = 1433
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 126/212 (59%), Gaps = 12/212 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D + + ATG GKSLCFQ P + GK+ +VISPLI
Sbjct: 541 LKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLI 600
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ L + ACFLGS Q +N + L G Y I+Y+ PE + LQ+L
Sbjct: 601 SLMEDQVLHLKMSNIPACFLGSAQSENVLTDIKL-GKYRIVYITPEYCSGNMGLLQQLEA 659
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GI L A+DE HC+S+WGHDFR +R+L +LK+ +P++ALTATA+
Sbjct: 660 DIGITLIAVDEAHCISEWGHDFRNSFRKLG---------SLKTALPKVPIVALTATASSS 710
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+REDI+ L++ + + T F RPNL V+
Sbjct: 711 IREDIVCCLNL-RNPQITCTGFDRPNLYLEVR 741
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 103/177 (58%), Gaps = 13/177 (7%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G TIIY P+RK T + L + Y+A + + +H F ++++ V+ATIAF
Sbjct: 766 GPTIIYCPSRKMTQQVTDELRKLNLSCGTYHAGMSFRTRKDIHHRFVRDEIQCVIATIAF 825
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSRR 629
GMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ A+++ LL R
Sbjct: 826 GMGINKADIRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADINVNRHLLTEIR 885
Query: 630 SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
+E +M++ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 886 NEKFRLYKLKMMAKMEKY-LHSSRCRRQIILSHF-EDKQVQKASLGIMGTEKCCDNC 940
>gi|190575547|ref|YP_001973392.1| ATP-dependent DNA helicase [Stenotrophomonas maltophilia K279a]
gi|190013469|emb|CAQ47104.1| putative ATP-dependent DNA helicase [Stenotrophomonas maltophilia
K279a]
Length = 601
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 132/219 (60%), Gaps = 19/219 (8%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ LL++ FG+ + Q++ + A HD LVL TG GKSLC+Q+PALL +VIS
Sbjct: 6 AHDLLQRVFGYDDFRGPQQDIVEHVAAGHDALVLMPTGGGKSLCYQVPALLRDGCGIVIS 65
Query: 221 PLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVI--RLI 275
PLI+LM DQ L + GV A +L S + +VE++ L G ++YV PE ++ R +
Sbjct: 66 PLIALMQDQVEALRQLGVRAEYLNSTLDAETAGRVERELLAGELDMLYVAPERLLTGRFL 125
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L R IALFAIDE HCVS+WGHDFRP+YR+L+VL E + IP +A
Sbjct: 126 SLLSRSQ----IALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------QIPRIA 172
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + +I + L + + FV +SF RPN+R++V
Sbjct: 173 LTATADPPTQREIAERLDLQEARHFV-SSFDRPNIRYTV 210
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 88/170 (51%), Gaps = 4/170 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A++LCG G A Y+A LP F V+ ATIAFGMG
Sbjct: 233 IVYCMSRRKVEETAEFLCGQGFNALPYHAGLPPEVRANNQRRFLREDGIVMCATIAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 293 IDKPDVRFVAHTDLPKSMEGYYQETGRAGRDGEAAEAWLCYGLGDVVLLKQMIEQSEAGE 352
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
+ KQ R D + CR ++L+ FGE + + C CD C+ P
Sbjct: 353 ERKQLERGKLDHLLGYCESMQCRRQVLLAGFGETYP-QPCGNCDNCLTPP 401
>gi|424669859|ref|ZP_18106884.1| ATP-dependent DNA helicase RecQ [Stenotrophomonas maltophilia
Ab55555]
gi|401071930|gb|EJP80441.1| ATP-dependent DNA helicase RecQ [Stenotrophomonas maltophilia
Ab55555]
gi|456734355|gb|EMF59171.1| ATP-dependent DNA helicase RecQ [Stenotrophomonas maltophilia EPM1]
Length = 601
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 132/219 (60%), Gaps = 19/219 (8%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ LL++ FG+ + Q++ + A HD LVL TG GKSLC+Q+PALL +VIS
Sbjct: 6 AHDLLQRVFGYDDFRGPQQDIVEHVAAGHDALVLMPTGGGKSLCYQVPALLRDGCGIVIS 65
Query: 221 PLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVI--RLI 275
PLI+LM DQ L + GV A +L S + +VE++ L G ++YV PE ++ R +
Sbjct: 66 PLIALMQDQVEALRQLGVRAEYLNSTLDAETAGRVERELLAGELDMLYVAPERLLTGRFL 125
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L R IALFAIDE HCVS+WGHDFRP+YR+L+VL E + IP +A
Sbjct: 126 SLLSRSQ----IALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------QIPRIA 172
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + +I + L + + FV +SF RPN+R++V
Sbjct: 173 LTATADPPTQREIAERLDLQEARHFV-SSFDRPNIRYTV 210
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 88/170 (51%), Gaps = 4/170 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A++LCG G A Y+A LP F V+ ATIAFGMG
Sbjct: 233 IVYCMSRRKVEETAEFLCGQGFNALPYHAGLPPEVRANNQRRFLREDGIVMCATIAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 293 IDKPDVRFVAHTDLPKSMEGYYQETGRAGRDGEAAEAWLCYGLGDVVLLKQMIEQSEAGE 352
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
+ KQ R D + CR ++L+ FGE + + C CD C+ P
Sbjct: 353 ERKQLERGKLDHLLGYCESMQCRRQVLLAGFGETYP-QPCGNCDNCLTPP 401
>gi|345872030|ref|ZP_08823970.1| ATP-dependent DNA helicase RecQ [Thiorhodococcus drewsii AZ1]
gi|343919564|gb|EGV30310.1| ATP-dependent DNA helicase RecQ [Thiorhodococcus drewsii AZ1]
Length = 728
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 128/216 (59%), Gaps = 19/216 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L + FG+ + Q E + + D LVL TG GKSLC+QIPAL+ V VV+SPLI
Sbjct: 8 ILDRVFGYDRFRGAQAEIIDQVVGGGDVLVLMPTGGGKSLCYQIPALIRPGVGVVVSPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGSG-QPDN--KVEQKALRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ L + GV A FL S PD VEQ L G ++YV PE ++ R + L
Sbjct: 68 ALMQDQVDALRQLGVRAAFLNSSLAPDQARAVEQDMLDGALDLVYVAPERLMTERFLGLL 127
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+R+ IALFAIDE HCVS+WGHDFRP+Y +L +L+E + +P +ALTA
Sbjct: 128 ERVE----IALFAIDEAHCVSQWGHDFRPEYIQLGLLQERWPR---------VPRIALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA R +IL L + +FV +SF RPN+R+ +
Sbjct: 175 TADAPTRNEILARLSLEGARQFV-SSFDRPNIRYRI 209
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 104/203 (51%), Gaps = 13/203 (6%)
Query: 489 SFERTDLLNKPAER-------LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + E+ L+ L+ I+Y +R+ A +L G A
Sbjct: 199 SFDRPNIRYRIVEKNGPRQQLLAFLRREHPQDAGIVYCLSRRRVEETATFLQSHGFSALP 258
Query: 542 YNASLPKSQLRRVH-TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A L +++RR H F + V+VATIAFGMGIDK +VR + H P+SLE+YYQE
Sbjct: 259 YHAGL-SAEIRRAHQARFLREEGVVMVATIAFGMGIDKPDVRFVAHLDLPKSLESYYQET 317
Query: 601 GRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD + L + L + +E++ K+ D T+ CR +
Sbjct: 318 GRAGRDGLPADAWMTYGLGDVVMLRRIIEDSEAEERFKRVEMHKLDGMLGYCETTECRRQ 377
Query: 658 ILVEYFGEDFSHEKCQLCDVCVD 680
+++ YFGE C CD C++
Sbjct: 378 VMLNYFGETLD-APCGNCDTCLE 399
>gi|261289349|ref|XP_002603118.1| hypothetical protein BRAFLDRAFT_198907 [Branchiostoma floridae]
gi|229288434|gb|EEN59129.1| hypothetical protein BRAFLDRAFT_198907 [Branchiostoma floridae]
Length = 666
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 142/248 (57%), Gaps = 31/248 (12%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
++ SL K FG + Q EA +A L DC +L TG GKSLC+Q+PA+++G V +VI
Sbjct: 11 RMTSLFNKVFGLHRFRTNQLEACNAALLGKDCFILMPTGGGKSLCYQLPAIVSGGVTIVI 70
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMY----------SIIYVCPE 269
SPL SL+ DQ SKL+ V A L SG+ + Q+ G+Y ++YV PE
Sbjct: 71 SPLKSLIQDQVSKLNGLEVPAAHL-SGE----LSQQVASGVYMDLARRTPQTKLLYVTPE 125
Query: 270 TVI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
V +L+ L+ L + + F IDE HCVS+WGHDFRPDY++L VLR++F
Sbjct: 126 KVSSSEKLLSTLKSLYQRGLLDRFVIDEAHCVSQWGHDFRPDYKKLCVLRKSFPG----- 180
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYK 386
+P+MALTATAT +VR DIL L M+ FV SF R NL +SV K S
Sbjct: 181 ----VPMMALTATATPRVRRDILHQLGMTDPRWFV-QSFNRTNLHYSVMPKKVKSAT--- 232
Query: 387 KDFCQLID 394
K+ +LI+
Sbjct: 233 KEVLELIN 240
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 124/233 (53%), Gaps = 22/233 (9%)
Query: 488 RSFERTDLL---------NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVK 538
+SF RT+L + E L ++ I+Y +RKE +++ LC G
Sbjct: 212 QSFNRTNLHYSVMPKKVKSATKEVLELINSRFRSKTGIVYCLSRKECETVSDELCRNGTS 271
Query: 539 AAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQ 598
A AY+A + + R+ + E+ +V+ ATIAFGMGIDK +VR +IHY P+S+E YYQ
Sbjct: 272 ACAYHAGMSDKERARIQDLWPEH-YKVICATIAFGMGIDKPDVRFVIHYSLPKSVEGYYQ 330
Query: 599 EAGRAGRDGHLADCVLYANLSS---MPTLLPSRRSEDQTKQAYRM--LSDCFRYGMNTSC 653
E+GRAGRDG +DC+L+ N M L+ + + M L +Y N S
Sbjct: 331 ESGRAGRDGEASDCILFYNYHDKMRMQKLIHMDKEATYESRKVHMDNLLRMVQYCENESD 390
Query: 654 CRAKILVEYFGE-DFSHEKC-----QLCDVC-VDGPPEMKNLKEEANILMQVI 699
CR L+ YFGE DF+ E C CD C ++G EMK++ EA ++++ +
Sbjct: 391 CRRAQLLHYFGETDFNPELCTSDPRTTCDNCKLEGAFEMKDVTTEAKMVVEFV 443
>gi|344208534|ref|YP_004793675.1| ATP-dependent DNA helicase RecQ [Stenotrophomonas maltophilia JV3]
gi|343779896|gb|AEM52449.1| ATP-dependent DNA helicase RecQ [Stenotrophomonas maltophilia JV3]
Length = 601
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 132/219 (60%), Gaps = 19/219 (8%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ LL++ FG+ + Q++ + A HD LVL TG GKSLC+Q+PALL +VIS
Sbjct: 6 AHDLLQRVFGYDDFRGPQQDIVEHVAAGHDALVLMPTGGGKSLCYQVPALLRDGCGIVIS 65
Query: 221 PLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVI--RLI 275
PLI+LM DQ L + GV A +L S + +VE++ L G ++YV PE ++ R +
Sbjct: 66 PLIALMQDQVEALRQLGVRAEYLNSTLDAETAGRVERELLAGELDMLYVAPERLLTGRFL 125
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L R IALFAIDE HCVS+WGHDFRP+YR+L+VL E + IP +A
Sbjct: 126 SLLSR----SQIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------QIPRIA 172
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + +I + L + + FV +SF RPN+R++V
Sbjct: 173 LTATADPPTQREIAERLDLQEARHFV-SSFDRPNIRYTV 210
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 88/170 (51%), Gaps = 4/170 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A++LCG G A Y+A LP F V+ ATIAFGMG
Sbjct: 233 IVYCMSRRKVEETAEFLCGQGFNALPYHAGLPPDVRANNQRRFLREDGIVMCATIAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 293 IDKPDVRFVAHTDLPKSMEGYYQETGRAGRDGEAAEAWLCYGLGDVVLLKQMIEQSEAGE 352
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
+ KQ R D + CR ++L+ FGE + + C CD C+ P
Sbjct: 353 ERKQLERAKLDHLLGYCESMQCRRQVLLAGFGETYP-QPCGNCDNCLTPP 401
>gi|60682718|ref|YP_212862.1| ATP-dependent DNA helicase [Bacteroides fragilis NCTC 9343]
gi|60494152|emb|CAH08944.1| putative ATP-dependent DNA helicase [Bacteroides fragilis NCTC
9343]
Length = 607
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 126/215 (58%), Gaps = 16/215 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + ++ D LVL TG GKS+C+Q+PALL +VISPLIS
Sbjct: 11 LKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + + + G ++Y+ PE +L+ L
Sbjct: 71 LMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPE---KLLSEADYL 127
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
++LFA+DE HC+S+WGHDFRP+Y R+ LR F ++P++ALTATA
Sbjct: 128 LRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFP---------NVPMIALTATAD 178
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
REDI++ L + + F+ +SF RPNL SVK
Sbjct: 179 KITREDIVRQLQLRQPQIFI-SSFDRPNLSLSVKR 212
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 111/194 (57%), Gaps = 11/194 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L Q +F +++EVV ATIAFGMG
Sbjct: 236 IIYCMSRSKTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMG 295
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L + L +Q
Sbjct: 296 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMASDTILFYSLGDLILLTKFATESNQQN 355
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
L+ +Y + CR +IL+ YFGE + E C CDVC + PPE + + I+
Sbjct: 356 INLEKLNRMQQYA-ESDICRRRILLSYFGET-TTEDCGNCDVCRN-PPE----RFDGTII 408
Query: 696 MQ----VIAAYNEQ 705
+Q IA N+Q
Sbjct: 409 VQKALSAIARTNQQ 422
>gi|440907539|gb|ELR57678.1| Werner syndrome ATP-dependent helicase [Bos grunniens mutus]
Length = 1430
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 124/211 (58%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D +V+ TG GKSLCFQ P + G + +VISPLI
Sbjct: 532 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMTTGYGKSLCFQYPPVYAGGIGLVISPLI 591
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q N VE L G Y I+Y+ PE ++ L++L
Sbjct: 592 SLMEDQVLQLEISSIPACFLGSAQSKNVVEDIKL-GKYRIVYLTPEFCSGNLELLRQLEA 650
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ GI L A+DE HC+S+WGHDFR +R L L+ F +P++ALTATA
Sbjct: 651 NIGITLIAVDEAHCISEWGHDFRNSFRDLGCLKAEFPK---------VPIVALTATAGSS 701
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
VREDI+ L++ K + T F RPNL V
Sbjct: 702 VREDIVCCLNL-KDPQITCTGFDRPNLYLEV 731
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 96/155 (61%), Gaps = 4/155 (2%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A L + ++VH F ++++ V+AT+A
Sbjct: 757 EGPTIIYCPSRKMTEQVTAELKKLKLACGTYHAGLSINLRKQVHHRFMRDEIQCVIATVA 816
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ A+++ LL
Sbjct: 817 FGMGINKADIRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADMNLNRCLLSEI 876
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYF 663
R+E +M+ +Y + +S CR +I++ +F
Sbjct: 877 RNEKFRLYKLKMMGKMEKY-LYSSKCRRQIILSHF 910
>gi|285019020|ref|YP_003376731.1| DNA helicase superfamily II protein [Xanthomonas albilineans GPE
PC73]
gi|283474238|emb|CBA16739.1| putative dna helicase superfamily II protein [Xanthomonas
albilineans GPE PC73]
Length = 602
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 132/225 (58%), Gaps = 17/225 (7%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
++LL + FG+ + Q++ + A HD LVL TG GKSLC+QIP+LL +V+SP
Sbjct: 6 HALLSRVFGYDQFRGPQQDIVEHVAAGHDALVLMPTGGGKSLCYQIPSLLREGTGIVVSP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP- 277
LI+LM DQ L + GV A +L S + VE+ L G ++YV PE RL+ P
Sbjct: 66 LIALMQDQVEALHQVGVRAEYLNSTLDAERAQHVERALLAGELDLLYVAPE---RLLTPR 122
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + P +ALT
Sbjct: 123 FLSLIERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPQT---------PRIALT 173
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
ATA + +I + L +++ FV +SF RPN+R++V + R
Sbjct: 174 ATADPPTQREIAERLDLAQARHFV-SSFDRPNIRYTVVQKDNARR 217
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 85/168 (50%), Gaps = 6/168 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A +L G+ A Y+A LP + F + V+ ATIAFGMG
Sbjct: 232 IVYCLSRRKVEETADFLVREGLNALPYHAGLPANVRAEHQRRFLREEGIVMCATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL----PSRRSE 631
IDK +VR + H P+SLE YYQE GRAGRDG A+ L L + L E
Sbjct: 292 IDKPDVRFVAHTDLPKSLEGYYQETGRAGRDGDAAEAWLCYGLGDVVLLKQMIEQGEAGE 351
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
D+ + R L Y + CR ++L+ FGE + + C CD C+
Sbjct: 352 DRKRVERRKLDQLLGY-CESLQCRRQVLLANFGETYP-QPCGNCDNCL 397
>gi|126273765|ref|XP_001368666.1| PREDICTED: Bloom syndrome protein [Monodelphis domestica]
Length = 1401
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + Q EA++A L DC VL TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 642 IFHKKFGLHHFRTNQLEAINAVLLGEDCFVLMPTGGGKSLCYQLPACVSPGVTIVISPLR 701
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 702 SLIVDQVQKLTSLDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLI 761
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 762 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPMMA 812
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + K F + SF R NL++SV
Sbjct: 813 LTATANPRVQKDILTQLKILKPQVFSM-SFNRHNLKYSV 850
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 96/175 (54%), Gaps = 12/175 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVVATIAFGM 574
IIY +R+E ++A L G+ A +Y+A L S V H +++ +V+ ATIAFGM
Sbjct: 876 IIYCLSRRECDTMADTLQKDGLAALSYHAGLSDSARDEVQHKWINQDGCQVICATIAFGM 935
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL----LPSRRS 630
GIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ N + L L +
Sbjct: 936 GIDKPDVRYVIHSSLPKSVEGYYQESGRAGRDGEMSHCLLFYNYHDVTRLKRLILMEKDG 995
Query: 631 EDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQ-----LCDVC 678
T+Q + L Y N CR L+ YFGE+ F+ C+ CD C
Sbjct: 996 NSHTRQTHFNNLYSMVHYCENIIECRRIQLLSYFGENGFNPNFCKEYPDVTCDNC 1050
>gi|265765824|ref|ZP_06093865.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_16]
gi|263253492|gb|EEZ24957.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_16]
Length = 607
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 126/214 (58%), Gaps = 16/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + ++ D LVL TG GKS+C+Q+PALL +VISPLIS
Sbjct: 11 LKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + + + G ++Y+ PE +L+ L
Sbjct: 71 LMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPE---KLLSEADYL 127
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
++LFA+DE HC+S+WGHDFRP+Y R+ LR F ++P++ALTATA
Sbjct: 128 LRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFP---------NVPMIALTATAD 178
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
REDI++ L + + F+ +SF RPNL SVK
Sbjct: 179 KITREDIIRQLQLRQPQIFI-SSFDRPNLSLSVK 211
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 111/194 (57%), Gaps = 11/194 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R +T ++A+ L G++ Y+A L Q +F +++EVV ATIAFGMG
Sbjct: 236 IVYCMSRSKTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMG 295
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L + L +Q
Sbjct: 296 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTILFYSLGDLILLTKFATESNQQN 355
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
L+ +Y + CR +IL+ YFGE + E C CDVC + PPE + + I+
Sbjct: 356 INLEKLNRMQQYA-ESDICRRRILLSYFGET-TTEDCGNCDVCRN-PPE----RFDGTII 408
Query: 696 MQ----VIAAYNEQ 705
+Q IA N+Q
Sbjct: 409 VQKALSAIARTNQQ 422
>gi|326315034|ref|YP_004232706.1| ATP-dependent DNA helicase RecQ [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323371870|gb|ADX44139.1| ATP-dependent DNA helicase RecQ [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 620
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 134/224 (59%), Gaps = 19/224 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGK-VVVVI 219
+L FG+ + Q+ + +A D LVL TG GKSLC+Q+PA++ G+ V +V+
Sbjct: 7 VLHDVFGYEHFRGPQQAIVEHVIAGGDALVLMPTGGGKSLCYQVPAIVRRDAGRGVAIVV 66
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPE--TVIRL 274
SPLI+LMHDQ L + GV A +L S Q ++E++ RG +++Y PE T R
Sbjct: 67 SPLIALMHDQVGALHEAGVDAAYLNSTLDWQQTQELERRVARGDITMLYAAPERLTTPRF 126
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
++ L L + +++FAIDE HCVS+WGHDFRP+YR L+VL E + +P +
Sbjct: 127 LELLDGLHQRGQLSMFAIDEAHCVSQWGHDFRPEYRALTVLHERYPG---------VPRI 177
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
ALTATA REDI++ L + FV +SF RPN+R+++ K
Sbjct: 178 ALTATADALTREDIVERLQLEGAQHFV-SSFDRPNIRYTIVEKK 220
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 105/214 (49%), Gaps = 12/214 (5%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
A+ L ++ + ++Y +RK ++ L G+K+ Y+A LP + F
Sbjct: 224 AQLLRFIEREHPEDAGVVYCQSRKRVEEMSAALVDAGLKSLPYHAGLPPEVRQENQDRFL 283
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
+ V+VATIAFGMGIDK +VR + H P+++E YYQE GRAGRDG AD + L
Sbjct: 284 REEGIVMVATIAFGMGIDKPDVRFVAHVDMPKNIEGYYQETGRAGRDGLPADAWMAYGLQ 343
Query: 620 SMPTLLPSRRSEDQT------KQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
++ RR D++ KQ R D + CR L+ YFGE E C
Sbjct: 344 D---VVNQRRMIDESPAGEEFKQVMRGKLDALLGLAEATDCRRVRLLGYFGE--PSEPCG 398
Query: 674 LCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSN 707
CD C++ PP + + + A L+ I +E S
Sbjct: 399 NCDNCLN-PPAVWDGTDAARKLLSTIYRVHEASG 431
>gi|53714712|ref|YP_100704.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis YCH46]
gi|52217577|dbj|BAD50170.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis YCH46]
Length = 607
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 126/215 (58%), Gaps = 16/215 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + ++ D LVL TG GKS+C+Q+PALL +VISPLIS
Sbjct: 11 LKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + + + G ++Y+ PE +L+ L
Sbjct: 71 LMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPE---KLLSEADYL 127
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
++LFA+DE HC+S+WGHDFRP+Y R+ LR F ++P++ALTATA
Sbjct: 128 LRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFP---------NVPMIALTATAD 178
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
REDI++ L + + F+ +SF RPNL SVK
Sbjct: 179 KITREDIVRQLQLRQPQIFI-SSFDRPNLSLSVKR 212
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 111/194 (57%), Gaps = 11/194 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R +T ++A+ L G++ Y+A L Q +F +++EVV ATIAFGMG
Sbjct: 236 IVYCMSRSKTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMG 295
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L + L +Q
Sbjct: 296 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMASDTILFYSLGDLILLTKFATESNQQN 355
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
L+ +Y + CR +IL+ YFGE + E C CDVC + PPE + + I+
Sbjct: 356 INLEKLNRMQQYA-ESDICRRRILLSYFGET-TTEDCGNCDVCRN-PPE----RFDGTII 408
Query: 696 MQ----VIAAYNEQ 705
+Q IA N+Q
Sbjct: 409 VQKALSAIARTNQQ 422
>gi|120608889|ref|YP_968567.1| ATP-dependent DNA helicase RecQ [Acidovorax citrulli AAC00-1]
gi|120587353|gb|ABM30793.1| ATP-dependent DNA helicase RecQ [Acidovorax citrulli AAC00-1]
Length = 705
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 133/220 (60%), Gaps = 19/220 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGK-VVVVI 219
+L FG+ + Q+ + +A D LVL TG GKSLC+Q+PA++ GK V +V+
Sbjct: 60 VLHDVFGYEHFRGPQQAIVEHVIAGGDALVLMPTGGGKSLCYQVPAIVRRDAGKGVAIVV 119
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPE--TVIRL 274
SPLI+LMHDQ L + GV A +L S Q ++E++ RG +++Y PE T R
Sbjct: 120 SPLIALMHDQVGALHEAGVDAAYLNSTLDWQQTQELERRVARGDITMLYAAPERLTTPRF 179
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
++ L L + +++FAIDE HCVS+WGHDFRP+YR L+VL E + +P +
Sbjct: 180 LELLDGLHQRGQLSMFAIDEAHCVSQWGHDFRPEYRALTVLHERYPG---------VPRI 230
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA REDI++ L + FV +SF RPN+R+++
Sbjct: 231 ALTATADALTREDIVERLQLEGAQHFV-SSFDRPNIRYTI 269
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 107/241 (44%), Gaps = 37/241 (15%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
A+ L ++ + ++Y +RK ++ L G+K+ Y+A LP + F
Sbjct: 277 AQLLRFIEREHPEDAGVVYCQSRKRVEEMSAALVDAGLKSLPYHAGLPPEVRQENQDRFL 336
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
+ V+VATIAFGMGIDK +VR + H P+++E YYQE GRAGRDG AD + L
Sbjct: 337 REEGIVMVATIAFGMGIDKPDVRFVAHVDMPKNIEGYYQETGRAGRDGLPADAWMAYGLQ 396
Query: 620 SMPTLLPSRRSEDQT------KQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDF------ 667
++ RR D++ KQ R D + CR L+ YFGE +
Sbjct: 397 D---VVNQRRMIDESPAGEEFKQVMRGKLDALLGLAEATDCRRVRLLGYFGEVYGEPSSA 453
Query: 668 ---------------SHE------KCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQS 706
HE C CD C++ PP + + + A L+ I +E S
Sbjct: 454 AGPPQGASGPLGGQRGHEVPSVGATCGNCDNCLN-PPAVWDGTDAARKLLSTIYRVHEAS 512
Query: 707 N 707
Sbjct: 513 G 513
>gi|195396248|ref|XP_002056744.1| GJ10048 [Drosophila virilis]
gi|194143453|gb|EDW59856.1| GJ10048 [Drosophila virilis]
Length = 1324
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 138/231 (59%), Gaps = 18/231 (7%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG S + Q + ++A L +DC VL TG GKSLC+Q+PA+LT V +VISPL SL+ D
Sbjct: 564 FGLKSFRPNQLQVINAALLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFD 623
Query: 229 QCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETV---IRLIKPLQR 280
Q +KL+ + A + Q ++V + + + ++YV PE + R L +
Sbjct: 624 QVNKLASLDICAKSMSGEQTLDEVMTIYRDLECHPPLVKLLYVTPEKISSSARFQDTLDQ 683
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L+ + I+ F IDE HCVS+WGHDFRPDY++L +LR+ F ++P MALTATA
Sbjct: 684 LSANNYISRFVIDEAHCVSQWGHDFRPDYKKLGILRKRFP---------NVPSMALTATA 734
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQ 391
T +VR+DIL+ L+++ K+ L+SF R NLR+ V K +S + F Q
Sbjct: 735 TPRVRQDILQQLNLTH-CKWFLSSFNRSNLRYQVLPKKGASTLDDIRSFIQ 784
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 101/174 (58%), Gaps = 10/174 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RKE +A+ +C G++A AY+A L + ++ NK+ V+ ATIAFGMG
Sbjct: 793 IIYCLSRKECDEVAQKMCAVGIRAVAYHAGLTDAARESRQKDWITNKVRVICATIAFGMG 852
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL----PSRRSE 631
IDK +VR ++HY P+S+E YYQEAGRAGRDG +ADC+LY N S M L R +
Sbjct: 853 IDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGEIADCILYYNYSDMLRLKKMMDADRALQ 912
Query: 632 DQTKQAY-RMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-----QLCDVCV 679
K+ + L Y N + CR ++YFGE F+ E+C CD C+
Sbjct: 913 YHVKKIHIDNLHRIVGYCENITDCRRAQQLDYFGEHFTSEQCLENRRTACDNCL 966
>gi|319643550|ref|ZP_07998171.1| ATP-dependent DNA helicase [Bacteroides sp. 3_1_40A]
gi|345518434|ref|ZP_08797885.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_3_47FAA]
gi|254835825|gb|EET16134.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_3_47FAA]
gi|317384814|gb|EFV65772.1| ATP-dependent DNA helicase [Bacteroides sp. 3_1_40A]
Length = 605
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 127/214 (59%), Gaps = 16/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q++ + L D LVL TG GKS+C+Q+PALL +V+SPLIS
Sbjct: 5 LKNYFGYDSFRPLQQDIIQNILVQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + ++ L+G ++Y+ PE RL+ L
Sbjct: 65 LMKDQVESLQANGIAARALNSSNNETENINLRRECLQGKIKLLYISPE---RLLIETNFL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+ I+LFAIDE HC+S+WGHDFRP+Y +L VLR F +P++ALTATA
Sbjct: 122 LKDIQISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPK---------VPIVALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
R+DI++ L + K K ++SF RPNL VK
Sbjct: 173 KITRKDIVQQLAL-KDPKIFISSFDRPNLSLEVK 205
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 133/252 (52%), Gaps = 16/252 (6%)
Query: 480 PHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539
P+ + R +++ D + E + E ++ IIY +R +T ++A L G++A
Sbjct: 198 PNLSLEVKRGYQQKDKMRTILEFI----EKHKNECGIIYCMSRSKTENVAAMLMKQGIRA 253
Query: 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599
Y+A L + +F ++++VV ATIAFGMGIDK NVR +IHY P+S+E++YQE
Sbjct: 254 TVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMGIDKSNVRWVIHYNLPKSIESFYQE 313
Query: 600 AGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
GRAGRDG +D +L+ +L + L Q + L +Y + CR +IL
Sbjct: 314 IGRAGRDGMESDTLLFYSLGDLVMLSKFATESSQQEINLEKLHRMQQYA-ESDICRRRIL 372
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQ----VIAAYNEQSNSMDDDDGI 715
+ YFGE H+ C CDVC + PPE + + I++Q IA N+Q + D I
Sbjct: 373 LNYFGETMDHD-CGNCDVCRN-PPE----RFDGTIIVQKALSAIARTNQQIGTHMLID-I 425
Query: 716 YSGIKKQKFMDR 727
G Q+ +D+
Sbjct: 426 LKGSANQELIDK 437
>gi|387770728|ref|ZP_10126905.1| ATP-dependent DNA helicase RecQ [Pasteurella bettyae CCUG 2042]
gi|386903739|gb|EIJ68543.1| ATP-dependent DNA helicase RecQ [Pasteurella bettyae CCUG 2042]
Length = 630
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 132/214 (61%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG+ S + Q+E + A L D LV+ ATG+GKSLC+QIPAL + +VISPLI
Sbjct: 25 VLRSVFGYQSFRKGQEEVIEAALTGRDSLVVMATGNGKSLCYQIPALCFEGLTLVISPLI 84
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +G++A FL S Q KV+ KA+ G ++Y+ PE V + +
Sbjct: 85 SLMKDQVDQLLTNGISADFLNSTQSFEQQQKVQNKAISGELKLLYLSPEKV--MTNSFFQ 142
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
++ AIDE HC+S+WGHDFRP+Y +L L+ F + P+MALTATA
Sbjct: 143 FISLCNVSFIAIDEAHCISQWGHDFRPEYTQLGGLKSCFP---------NAPVMALTATA 193
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
R+DIL++LH+++ +V SF RPN+R+++
Sbjct: 194 DRTTRQDILQNLHLNEPHLYV-GSFDRPNIRYTL 226
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 135/262 (51%), Gaps = 27/262 (10%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R + IA+ L GV AA Y+A + Q V F + ++VVVATIAFGMG
Sbjct: 249 IVYCNSRSKVERIAEALKKKGVSAAGYHAGMEPQQRDAVQQAFQRDNIQVVVATIAFGMG 308
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLL------P 626
I+K NVR + H+ +S+EAYYQE GRAGRD A+ VL+ A+ + + +L P
Sbjct: 309 INKSNVRFVAHFDLSRSIEAYYQETGRAGRDDLPAEAVLFYEPADYAWLHKMLLEEPEGP 368
Query: 627 SRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMK 686
R + +A ++ + CR +L+ YFGE+ + CQ CD+C+D P +
Sbjct: 369 QREIKQHKLEAIGEFAE-------SQTCRRLVLLNYFGEN-RQKPCQNCDICLDPPKKYD 420
Query: 687 NLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYL 745
L + IL + Q G+ G++ QK + + ++ V I +++S++Y
Sbjct: 421 GLLDAQKILSTIYR--TGQCFGTQYVIGVMRGLQNQKIKENQHDQLSVYGIGKDKSKEY- 477
Query: 746 ATDLLWWRGLARIMENKGYIRE 767
W+ + R + + G +++
Sbjct: 478 ------WQSVIRQLIHLGLVQQ 493
>gi|422021069|ref|ZP_16367583.1| ATP-dependent DNA helicase RecQ [Providencia sneebia DSM 19967]
gi|414099974|gb|EKT61607.1| ATP-dependent DNA helicase RecQ [Providencia sneebia DSM 19967]
Length = 608
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 131/217 (60%), Gaps = 19/217 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+L FG+ S + Q+ + A L + DCLVL TG GKSLC+Q+PAL+ + +V+SPL
Sbjct: 15 SILNSTFGYQSFRPGQEAVIRAILDNRDCLVLMPTGGGKSLCYQVPALVKDGITLVVSPL 74
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL-----RGMYSIIYVCPETVIRLIKP 277
ISLM DQ +L HGV A L S Q +EQ+ + +G ++YV PE + L
Sbjct: 75 ISLMKDQVDQLQLHGVNAACLNSSQ--TALEQREVMDACSQGKIKLLYVAPERL--LTDY 130
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
+ +ALFA+DE HC+S+WGHDFRP+YR + LR++F D+P+MALT
Sbjct: 131 FLSHLSNWNVALFAVDEAHCISQWGHDFRPEYRGMGQLRQHFP---------DVPVMALT 181
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ATA R DI++ L + + ++SF RPN+R+++
Sbjct: 182 ATADETTRADIIRRLDL-QDPLIQISSFDRPNIRYTL 217
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 106/198 (53%), Gaps = 13/198 (6%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP ++L + + I+Y +R + A+ L G+ AY+A L Q V
Sbjct: 222 KPLDQLWFFIKAQKGKAGIVYCNSRNKVEETAERLKKRGLTVEAYHAGLDNQQREWVQDA 281
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F ++ +++VVAT+AFGMGI+K NVR + H+ P+++EAYYQE GRAGRDG A+ +L+ +
Sbjct: 282 FLKDNIQIVVATVAFGMGINKSNVRFVAHFDIPRNIEAYYQETGRAGRDGVEAEAILFYD 341
Query: 618 LSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMN-------TSCCRAKILVEYFGEDFSHE 670
+ M L RR ++ M D R+ +N CR +L+ YFGE+
Sbjct: 342 PADMAWL---RRCLEEKPAG--MHQDIERHKLNAIAAFAEAQTCRRLVLLNYFGEN-RQT 395
Query: 671 KCQLCDVCVDGPPEMKNL 688
C CD+C+D P + L
Sbjct: 396 PCGNCDICLDPPKQYDGL 413
>gi|375359515|ref|YP_005112287.1| putative ATP-dependent DNA helicase [Bacteroides fragilis 638R]
gi|301164196|emb|CBW23754.1| putative ATP-dependent DNA helicase [Bacteroides fragilis 638R]
Length = 607
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 126/214 (58%), Gaps = 16/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + ++ D LVL TG GKS+C+Q+PALL +VISPLIS
Sbjct: 11 LKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + + + G ++Y+ PE +L+ L
Sbjct: 71 LMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPE---KLLSEADYL 127
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
++LFA+DE HC+S+WGHDFRP+Y R+ LR F ++P++ALTATA
Sbjct: 128 LRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFP---------NVPMIALTATAD 178
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
REDI++ L + + F+ +SF RPNL SVK
Sbjct: 179 KITREDIVRQLQLRQPQIFI-SSFDRPNLSLSVK 211
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 111/194 (57%), Gaps = 11/194 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R +T ++A+ L G++ Y+A L Q +F +++EVV ATIAFGMG
Sbjct: 236 IVYCMSRSKTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMG 295
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L + L +Q
Sbjct: 296 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMASDTILFYSLGDLILLTKFATESNQQN 355
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
L+ +Y + CR +IL+ YFGE + E C CDVC + PPE + + I+
Sbjct: 356 INLEKLNRMQQYA-ESDICRRRILLSYFGET-TTEDCGNCDVCRN-PPE----RFDGTII 408
Query: 696 MQ----VIAAYNEQ 705
+Q IA N+Q
Sbjct: 409 VQKALSAIARTNQQ 422
>gi|121592519|ref|YP_984415.1| ATP-dependent DNA helicase RecQ [Acidovorax sp. JS42]
gi|120604599|gb|ABM40339.1| ATP-dependent DNA helicase RecQ [Acidovorax sp. JS42]
Length = 623
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 130/227 (57%), Gaps = 19/227 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVI 219
+L FG+ + Q+ + +A D LVL TG GKSLC+Q+PA++ V VV+
Sbjct: 7 VLHDVFGYEQFRGPQQAIIDHVIAGGDALVLMPTGGGKSLCYQVPAIVRRDAGLGVTVVV 66
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVI--RL 274
SPLI+LMHDQ L + GV A FL S Q VE++ RG +++Y PE V R
Sbjct: 67 SPLIALMHDQVGALHEAGVEAAFLNSTLDWQQTQDVERRLARGEITLLYAAPERVTTDRF 126
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ L L + LFAIDE HCVS+WGHDFRP+YR L++L E + +P +
Sbjct: 127 LTLLDGLHARGQLGLFAIDEAHCVSQWGHDFRPEYRALTLLHERYP---------QVPRI 177
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
ALTATA REDI++ L + F+ +SF RPN+R+++ K ++
Sbjct: 178 ALTATADALTREDIIERLQLQDARLFI-SSFDRPNIRYTIVEKKDAT 223
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 103/199 (51%), Gaps = 14/199 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
++Y +RK +A L G+ A Y+A L +++R+ H + F + V+VATIAFGM
Sbjct: 240 VVYCQSRKRVEELAATLQDAGINALPYHAGL-DTKVRQNHQDRFLREEGIVMVATIAFGM 298
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT 634
GIDK +VR + H P+++E YYQE GRAGRDG AD + L + + RR D++
Sbjct: 299 GIDKPDVRFVAHVDMPKNIEGYYQETGRAGRDGLNADAWMAYGLQDV---VNQRRMIDES 355
Query: 635 ------KQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
K R D + CR L+ YFGE + E C CD C++ PP + +
Sbjct: 356 PAGEEFKAVMRGKLDALLALAEATDCRRVRLLGYFGE--ASEPCGNCDNCLN-PPAVWDG 412
Query: 689 KEEANILMQVIAAYNEQSN 707
+ A L+ I +E S
Sbjct: 413 TDAARKLLSTIYRVHEASG 431
>gi|317479553|ref|ZP_07938681.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_1_36]
gi|316904283|gb|EFV26109.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_1_36]
Length = 603
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 130/216 (60%), Gaps = 20/216 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q++ + + D LVL TG GKS+C+Q+PALL+ VV+SPLIS
Sbjct: 5 LKTYFGYDSFRPLQEDIIRHLMDRKDALVLMPTGGGKSICYQLPALLSEGTAVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVIRLIKPLQ 279
LM DQ L +G+ A L S +++ E +LR G ++Y+ PE +L+
Sbjct: 65 LMKDQVETLCANGIAAGALNSN--NDETENASLRRACMEGKLKLLYISPE---KLLAEAN 119
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L I+LFAIDE HC+S+WGHDFRP+Y ++ +L + F +P++ALTAT
Sbjct: 120 YLLRDMHISLFAIDEAHCISQWGHDFRPEYTQMGILHQLFP---------QVPIIALTAT 170
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A REDI+K LH+++ F+ +SF RPNL +VK
Sbjct: 171 ADKITREDIIKQLHLNQPRIFI-SSFDRPNLSLTVK 205
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 112/180 (62%), Gaps = 9/180 (5%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566
+ P E G IIY +R + ++A+ L G+K+A Y+A L ++ +F ++++VV
Sbjct: 223 RHPGESG--IIYCMSRSKAETVAQMLQKQGIKSAVYHAGLSPARRDEAQDDFINDRVQVV 280
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLP 626
ATIAFGMGIDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L+ + +L
Sbjct: 281 CATIAFGMGIDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTLLFYSLADL--ILL 338
Query: 627 SRRSEDQTKQAYRM--LSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
++ + D +Q+ + L +Y CR +IL+ YFGE+ + + C CDVC PPE
Sbjct: 339 TKFATDSGQQSINLEKLQRMQQYA-EADICRRRILLSYFGENTTCD-CGNCDVC-KNPPE 395
>gi|307107282|gb|EFN55525.1| hypothetical protein CHLNCDRAFT_133956 [Chlorella variabilis]
Length = 817
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 157/279 (56%), Gaps = 27/279 (9%)
Query: 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLM 226
K FG+SS ++ Q++ + A L+ DC VL TG GKSL +Q+PA+LT V VV++PL+SLM
Sbjct: 281 KVFGNSSFRSEQRQIIEAALSGRDCFVLMPTGGGKSLTYQLPAVLTPGVTVVVTPLLSLM 340
Query: 227 HDQCSKLS---KHGVTACFLGSGQPDNKVEQKAL-------RGMYSIIYVCPETVIR--L 274
DQ L+ GV +L S Q E +A+ R ++YV PE ++R
Sbjct: 341 QDQVQALTLLPSGGVPTTYLSSQQ--TVAETRAVFLELGKARPTIKLLYVTPEQLVRGER 398
Query: 275 IKPLQRLAESRG-IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
+K R S G +A +DE HCVS WGHDFRPDY++L ++ S +P+
Sbjct: 399 LKGALRALHSHGLLARLVVDEAHCVSAWGHDFRPDYKQLGAVK--------SSCLRGVPM 450
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLI 393
MALTATAT +VR+DI+ +LHM+ +F + SFFRPNL F + T S S + + + +
Sbjct: 451 MALTATATPKVRQDIMSTLHMAAPRQFQV-SFFRPNLCF--RKDYTRSEDSGLEGYMEEM 507
Query: 394 DIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRI 432
+Y + + G + +D + ++ + + M+ + R+
Sbjct: 508 MVYIQNHREGSGIVYCLSRD-NTETSAAVHAGMTPKQRM 545
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 100/182 (54%), Gaps = 18/182 (9%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G I+Y +R T + +AA +A + Q +V ++ +++VVVATIA
Sbjct: 516 EGSGIVYCLSRDNTET-----------SAAVHAGMTPKQRMQVQNDWRTGRVQVVVATIA 564
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLP----- 626
FGMG+DK +VR +IH+ +S+E YYQEAGRAGRDG A+C+LY +P ++
Sbjct: 565 FGMGVDKADVRYVIHFTLSKSMEGYYQEAGRAGRDGGPAECLLYYAKRDVPRIVQLLHKG 624
Query: 627 SRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-QLCDVCVDGPPEM 685
++R++ ++ +L Y + CR ++EYFGE + C CDVC GPP
Sbjct: 625 AKRAKQSFQRELDLLKQMQAYCEDGERCRHAQVLEYFGERWQQGSCGAACDVCC-GPPAQ 683
Query: 686 KN 687
+
Sbjct: 684 QQ 685
>gi|336476813|ref|YP_004615954.1| ATP-dependent DNA helicase RecQ [Methanosalsum zhilinae DSM 4017]
gi|335930194|gb|AEH60735.1| ATP-dependent DNA helicase RecQ [Methanosalsum zhilinae DSM 4017]
Length = 611
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 137/225 (60%), Gaps = 15/225 (6%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ +L+K+FG++ + QKE +S L D L TG GKSLC+Q+PAL+ V VVIS
Sbjct: 1 MQHILQKYFGYNDFRPLQKEIISDILEGKDTFALMPTGGGKSLCYQLPALMMDGVTVVIS 60
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ---KALRGMYSIIYVCPETVIRLIKP 277
PLISLM DQ L +G+ A +L S ++++Q K + I+YV PE +I +
Sbjct: 61 PLISLMKDQVDNLKSNGIAAEYLNSTLGYSQIKQVHEKLIDNRIKILYVAPERLI-MSDT 119
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L + + +++FA+DE HC+S+WGHDFRP+YRRL++L++ F ++P++ALT
Sbjct: 120 FSYLKKGK-VSMFAVDEAHCISEWGHDFRPEYRRLNILKKRFR---------NVPIVALT 169
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
ATA+ +V +DI+K L + + SF R NL + VK K + R
Sbjct: 170 ATASPKVEKDIVKQLSLEDCRTY-RASFNRKNLFYHVKTKKDTYR 213
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 108/187 (57%), Gaps = 5/187 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +++K L G K AY+A L + F ++ +++VAT+AFGMG
Sbjct: 228 IIYCQSRSMVETLSKRLNKDGFKTLAYHAGLSDFKREYNQNSFIQDNTDIIVATVAFGMG 287
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSED 632
IDK +VR +IHY P++LE+YYQE GR GRDG +CVL YA+ + + +++++
Sbjct: 288 IDKPDVRFVIHYDLPKNLESYYQETGRGGRDGLPCECVLFFSYADKYKIEYFIEQKKTKE 347
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ A L Y ++ CR K+L+EYFGE + C+ CDVC++ P E + A
Sbjct: 348 ERDAALMQLRQMINY-CESNQCRRKVLLEYFGETYPESNCKKCDVCLN-PKEKFEGTKYA 405
Query: 693 NILMQVI 699
++++ I
Sbjct: 406 EMILKCI 412
>gi|333029863|ref|ZP_08457924.1| ATP-dependent DNA helicase RecQ [Bacteroides coprosuis DSM 18011]
gi|332740460|gb|EGJ70942.1| ATP-dependent DNA helicase RecQ [Bacteroides coprosuis DSM 18011]
Length = 605
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 133/231 (57%), Gaps = 17/231 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK FG+ + Q+E + L D LVL TG GKS+C+Q+PALL + +VISPLIS
Sbjct: 10 LKTKFGYEGFRPLQREIIENILDKKDTLVLMPTGGGKSICYQLPALLLKGITIVISPLIS 69
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S D + ++Q +G ++Y+ PE +L+ + L
Sbjct: 70 LMKDQVEALLANGINAGALNSNNSDTENELIKQNCRQGKIKLLYISPE---KLLSEIDYL 126
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+ I+LFA+DE HC+S+WGHDFRP+Y +L +L + F + +P++ALTATA
Sbjct: 127 LKDIDISLFAVDEAHCISQWGHDFRPEYTQLGILHQYFPS---------VPMVALTATAD 177
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHS-KTSSRASYKKDFCQ 391
R+DI++ L + K K ++SF RPNL V+ + + Y +F Q
Sbjct: 178 KITRQDIIRQLKL-KNPKIFISSFDRPNLSLKVEVGYQQKDKHKYIYNFIQ 227
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 118/201 (58%), Gaps = 9/201 (4%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVA 568
P E G IIY +RK+T +I +YL G+ A Y+A L + + +F ++++VV A
Sbjct: 230 PGEAG--IIYCMSRKKTETICRYLEKKGISATIYHAGLAPNIREKAQDDFINDRVQVVCA 287
Query: 569 TIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSR 628
TIAFGMGIDK NVR +IHY P+S+E+YYQE GRAGRDG +D VL+ N+ + L
Sbjct: 288 TIAFGMGIDKSNVRWVIHYNMPKSIESYYQEIGRAGRDGVASDTVLFYNVGDIILLTKFA 347
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
Q + L +Y +S CR +IL+ YFGE+ S + C CDVC PP+
Sbjct: 348 NESKQQEINLEKLDRIQQYA-ESSICRRRILLSYFGEE-STQNCGNCDVC-QNPPQ---- 400
Query: 689 KEEANILMQVIAAYNEQSNSM 709
+ + +IL+Q+ + ++N M
Sbjct: 401 RFDGSILVQMALSAIARTNQM 421
>gi|423305643|ref|ZP_17283642.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis CL03T00C23]
gi|423309812|ref|ZP_17287802.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis CL03T12C37]
gi|392680875|gb|EIY74239.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis CL03T00C23]
gi|392683916|gb|EIY77249.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis CL03T12C37]
Length = 603
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 130/216 (60%), Gaps = 20/216 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q++ + + D LVL TG GKS+C+Q+PALL+ VV+SPLIS
Sbjct: 5 LKTYFGYDSFRPLQEDIIRHLMDRKDALVLMPTGGGKSICYQLPALLSEGTAVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVIRLIKPLQ 279
LM DQ L +G+ A L S +++ E +LR G ++Y+ PE +L+
Sbjct: 65 LMKDQVETLCANGIAAGALNSN--NDETENASLRRACMEGKLKLLYISPE---KLLAEAN 119
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L I+LFAIDE HC+S+WGHDFRP+Y ++ +L + F +P++ALTAT
Sbjct: 120 YLLRDMHISLFAIDEAHCISQWGHDFRPEYTQMGILHQLFP---------QVPIIALTAT 170
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A REDI+K LH+++ F+ +SF RPNL +VK
Sbjct: 171 ADKITREDIIKQLHLNQPRIFI-SSFDRPNLSLTVK 205
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 112/180 (62%), Gaps = 9/180 (5%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566
+ P E G IIY +R + ++A+ L G+K+A Y+A L ++ +F ++++VV
Sbjct: 223 RHPGESG--IIYCMSRSKAETVAQMLQKQGIKSAVYHAGLSPARRDEAQDDFINDRVQVV 280
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLP 626
ATIAFGMGIDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L+ + +L
Sbjct: 281 CATIAFGMGIDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTLLFYSLADL--ILL 338
Query: 627 SRRSEDQTKQAYRM--LSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
++ + D +Q+ + L +Y CR +IL+ YFGE+ + + C CDVC PPE
Sbjct: 339 TKFATDSGQQSINLEKLQRMQQYA-EADICRRRILLSYFGENTTCD-CGNCDVC-KNPPE 395
>gi|170728871|ref|YP_001762897.1| ATP-dependent DNA helicase RecQ [Shewanella woodyi ATCC 51908]
gi|169814218|gb|ACA88802.1| ATP-dependent DNA helicase RecQ [Shewanella woodyi ATCC 51908]
Length = 608
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 131/215 (60%), Gaps = 20/215 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+ FG+ + ++ QKE + + +DCLV+ TG GKSLC+Q+PAL + +V+SPLIS
Sbjct: 17 LQSVFGYRTFRDGQKEVIEQSCSGYDCLVIMPTGGGKSLCYQLPALQLPGLTLVVSPLIS 76
Query: 225 LMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIR--LIKPLQ 279
LM DQ L + GV+A +L S QP ++ Q+ G ++YV PE +++ I L
Sbjct: 77 LMKDQVDSLIQMGVSAAYLNSSQPREESARILQQMHSGELKLLYVSPERLLQGHFIDRLH 136
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L ++LFAIDE HC+S+WGHDFRP+Y L LRE F +P+MALTAT
Sbjct: 137 EL----NLSLFAIDEAHCISQWGHDFRPEYAALGKLREVFP---------HVPIMALTAT 183
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
A R+DI L ++ + +LTSF RPN+R++V
Sbjct: 184 ADQATRKDICDRLTITPYS--LLTSFDRPNIRYTV 216
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 120/216 (55%), Gaps = 11/216 (5%)
Query: 489 SFERTDLLNKPAERLSMLQE-----PLEDGLT-IIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ AE+L+ + ++G + IIY +R+ +A+ L G A AY
Sbjct: 206 SFDRPNIRYTVAEKLNAANQLRQFVAAQNGNSGIIYCSSRRRVDEVAERLRLQGHNAEAY 265
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A + + V F +++L++VVAT+AFGMGI+K NVR ++HY P+S+E+YYQE GR
Sbjct: 266 HAGKTQEERADVQDRFLKDQLDIVVATVAFGMGINKSNVRYVVHYDIPKSVESYYQETGR 325
Query: 603 AGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG ++ +L A++ + L+ Q + + L+ + CR ++L
Sbjct: 326 AGRDGLESEALLLFDPADIGRVRHLIEQSEPGPQQQVEFHKLNTMAAFA-EAQTCRRQVL 384
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
+ YF E + E C CD+C+D P + +++ +L
Sbjct: 385 LHYFDES-ALEPCGNCDICLDPPKKYNGIQDAQKVL 419
>gi|423283377|ref|ZP_17262261.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 615]
gi|404581095|gb|EKA85801.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 615]
Length = 601
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 126/215 (58%), Gaps = 16/215 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + ++ D LVL TG GKS+C+Q+PALL +VISPLIS
Sbjct: 5 LKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + + + G ++Y+ PE +L+ L
Sbjct: 65 LMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPE---KLLSEADYL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
++LFA+DE HC+S+WGHDFRP+Y R+ LR F ++P++ALTATA
Sbjct: 122 LRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFP---------NVPMIALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
REDI++ L + + F+ +SF RPNL SVK
Sbjct: 173 KITREDIVRQLQLRQPQIFI-SSFDRPNLSLSVKR 206
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 111/194 (57%), Gaps = 11/194 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R +T ++A+ L G++ Y+A L Q +F +++EVV ATIAFGMG
Sbjct: 230 IVYCMSRSKTETVAQMLQKHGIRCGVYHAGLSARQRNETQDDFINDRIEVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L + L +Q
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMASDTILFYSLGDLILLTKFATESNQQN 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
L+ +Y + CR +IL+ YFGE + E C CDVC + PPE + + I+
Sbjct: 350 INLEKLNRMQQYA-ESDICRRRILLSYFGET-TTEDCGNCDVCRN-PPE----RFDGTII 402
Query: 696 MQ----VIAAYNEQ 705
+Q IA N+Q
Sbjct: 403 VQKALSAIARTNQQ 416
>gi|383119448|ref|ZP_09940187.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_2_5]
gi|382973213|gb|EES87060.2| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_2_5]
Length = 601
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 126/215 (58%), Gaps = 16/215 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + ++ D LVL TG GKS+C+Q+PALL +VISPLIS
Sbjct: 5 LKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + + + G ++Y+ PE +L+ L
Sbjct: 65 LMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPE---KLLSEADYL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
++LFA+DE HC+S+WGHDFRP+Y R+ LR F ++P++ALTATA
Sbjct: 122 LRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFP---------NVPMIALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
REDI++ L + + F+ +SF RPNL SVK
Sbjct: 173 KITREDIVRQLQLRQPQIFI-SSFDRPNLSLSVKR 206
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 111/194 (57%), Gaps = 11/194 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R +T ++A+ L G++ Y+A L Q +F +++EVV ATIAFGMG
Sbjct: 230 IVYCMSRSKTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L + L +Q
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMASDTILFYSLGDLILLTKFATESNQQN 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
L+ +Y + CR +IL+ YFGE + E C CDVC + PPE + + I+
Sbjct: 350 INLEKLNRMQQYA-ESDICRRRILLSYFGET-TTEDCGNCDVCRN-PPE----RFDGTII 402
Query: 696 MQ----VIAAYNEQ 705
+Q IA N+Q
Sbjct: 403 VQKALSAIARTNQQ 416
>gi|336411370|ref|ZP_08591837.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_56FAA]
gi|423251179|ref|ZP_17232194.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL03T00C08]
gi|423254505|ref|ZP_17235435.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL03T12C07]
gi|335942081|gb|EGN03930.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_56FAA]
gi|392652136|gb|EIY45798.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL03T00C08]
gi|392653827|gb|EIY47478.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL03T12C07]
Length = 601
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 126/215 (58%), Gaps = 16/215 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + ++ D LVL TG GKS+C+Q+PALL +VISPLIS
Sbjct: 5 LKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + + + G ++Y+ PE +L+ L
Sbjct: 65 LMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPE---KLLSEADYL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
++LFA+DE HC+S+WGHDFRP+Y R+ LR F ++P++ALTATA
Sbjct: 122 LRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFP---------NVPMIALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
REDI++ L + + F+ +SF RPNL SVK
Sbjct: 173 KITREDIVRQLQLRQPQIFI-SSFDRPNLSLSVKR 206
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 111/194 (57%), Gaps = 11/194 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R +T ++A+ L G++ Y+A L Q +F +++EVV ATIAFGMG
Sbjct: 230 IVYCMSRSKTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L + L +Q
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMASDTILFYSLGDLILLTKFATESNQQN 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
L+ +Y + CR +IL+ YFGE + E C CDVC + PPE + + I+
Sbjct: 350 INLEKLNRMQQYA-ESDICRRRILLSYFGET-TTEDCGNCDVCRN-PPE----RFDGTII 402
Query: 696 MQ----VIAAYNEQ 705
+Q IA N+Q
Sbjct: 403 VQKALSAIARTNQQ 416
>gi|423270795|ref|ZP_17249766.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL05T00C42]
gi|423274619|ref|ZP_17253565.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL05T12C13]
gi|392698719|gb|EIY91901.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL05T00C42]
gi|392704877|gb|EIY98011.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL05T12C13]
Length = 601
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 126/214 (58%), Gaps = 16/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + ++ D LVL TG GKS+C+Q+PALL +VISPLIS
Sbjct: 5 LKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + + + G ++Y+ PE +L+ L
Sbjct: 65 LMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPE---KLLSEADYL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
++LFA+DE HC+S+WGHDFRP+Y R+ LR F ++P++ALTATA
Sbjct: 122 LRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFP---------NVPMIALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
REDI++ L + + F+ +SF RPNL SVK
Sbjct: 173 KITREDIVRQLQLRQPQIFI-SSFDRPNLSLSVK 205
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 111/194 (57%), Gaps = 11/194 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R +T ++A+ L G++ Y+A L Q +F +++EVV ATIAFGMG
Sbjct: 230 IVYCMSRSKTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L + L +Q
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTILFYSLGDLILLTKFATESNQQN 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
L+ +Y + CR +IL+ YFGE + E C CDVC + PPE + + I+
Sbjct: 350 INLEKLNRMQQYA-ESDICRRRILLSYFGET-TTEDCGNCDVCRN-PPE----RFDGTII 402
Query: 696 MQ----VIAAYNEQ 705
+Q IA N+Q
Sbjct: 403 VQKALSAIARTNQQ 416
>gi|423261207|ref|ZP_17242109.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL07T00C01]
gi|423267342|ref|ZP_17246324.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL07T12C05]
gi|387774449|gb|EIK36560.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL07T00C01]
gi|392698045|gb|EIY91228.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL07T12C05]
Length = 601
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 126/214 (58%), Gaps = 16/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + ++ D LVL TG GKS+C+Q+PALL +VISPLIS
Sbjct: 5 LKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + + + G ++Y+ PE +L+ L
Sbjct: 65 LMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPE---KLLSEADYL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
++LFA+DE HC+S+WGHDFRP+Y R+ LR F ++P++ALTATA
Sbjct: 122 LRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFP---------NVPMIALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
REDI++ L + + F+ +SF RPNL SVK
Sbjct: 173 KITREDIVRQLQLRQPQIFI-SSFDRPNLSLSVK 205
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 111/194 (57%), Gaps = 11/194 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R +T ++A+ L G++ Y+A L Q +F +++EVV ATIAFGMG
Sbjct: 230 IVYCMSRSKTETVAQMLQKHGIRCGVYHAGLSARQRNETQDDFINDRIEVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L + L +Q
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTILFYSLGDLILLTKFATESNQQN 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
L+ +Y + CR +IL+ YFGE + E C CDVC + PPE + + I+
Sbjct: 350 INLEKLNRMQQYA-ESDICRRRILLSYFGET-ATEDCGNCDVCRN-PPE----RFDGTII 402
Query: 696 MQ----VIAAYNEQ 705
+Q IA N+Q
Sbjct: 403 VQKALSAIARTNQQ 416
>gi|392399436|ref|YP_006436037.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
gi|390530514|gb|AFM06244.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
Length = 729
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 136/223 (60%), Gaps = 19/223 (8%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
++ + LK+ FG++ + Q+ + L + V+ TG+GKSLC+Q+PA++ +
Sbjct: 5 KINLKKTLKEVFGYNQFRGNQETIIQNLLDGKNTFVIMPTGAGKSLCYQLPAIVREGTAI 64
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRL 274
VISPLI+LM +Q +L+ G+ A FL S NKV++ L G ++YV PE+ L
Sbjct: 65 VISPLIALMKNQVDQLNAVGINASFLNSTLSKSESNKVKKSVLAGNTKLLYVAPES---L 121
Query: 275 IKP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
KP L LA++ ++ AIDE HC+S+WGHDFRP+YRR+ + ++ G D+P
Sbjct: 122 TKPENLDFLAKA-NLSFIAIDEAHCISEWGHDFRPEYRRIRFIVDSLG---------DLP 171
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
++ALTATAT +V++DI K+LHM F TSF R NL + V+
Sbjct: 172 IIALTATATPKVQQDIQKNLHMEDANVFK-TSFNRQNLYYEVR 213
Score = 108 bits (271), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 91/153 (59%), Gaps = 3/153 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ I ++L +K+ Y+A L S + F +++++VATIAFGMG
Sbjct: 235 IIYCLSRKKVEEIHEFLKVNDIKSRPYHAGLDSSIRMQNQDAFLNEEVDIIVATIAFGMG 294
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR +IHY P+SLE YYQE GRAGRDG ADC+++ + + L + + T+
Sbjct: 295 IDKPDVRCVIHYDAPKSLEGYYQETGRAGRDGLNADCIMFYSPEDIHKLEKFNKDKPVTE 354
Query: 636 Q--AYRMLSDCFRYGMNTSCCRAKILVEYFGED 666
+ A +L + Y + CR + L+ YFGE+
Sbjct: 355 RDNARYLLQEMADYA-TSGVCRRRQLLHYFGEN 386
>gi|158424466|ref|YP_001525758.1| ATP-dependent DNA helicase [Azorhizobium caulinodans ORS 571]
gi|158331355|dbj|BAF88840.1| ATP-dependent DNA helicase [Azorhizobium caulinodans ORS 571]
Length = 608
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 129/214 (60%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG+ S + Q E + +A D LVL TG GKSLC+Q+PAL+ +VISPLI
Sbjct: 16 VLRHVFGYDSFRGRQAEIVDHVVAGGDALVLMPTGGGKSLCYQVPALVRPGTGIVISPLI 75
Query: 224 SLMHDQCSKLSKHGVTACFLGSG-QP--DNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LMHDQ L + GV A L S QP +VE++ G ++YV PE + L
Sbjct: 76 ALMHDQVQALRQLGVRAAALNSTLQPAEARQVERQLAMGELDLLYVAPERL--LTDSFLT 133
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L + IALFAIDE HCVS+WGHDFRP+YR+L++L E F + +P +ALTATA
Sbjct: 134 LLQGARIALFAIDEAHCVSQWGHDFRPEYRQLTLLHERFPS---------VPRIALTATA 184
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
R +I++ L + G F L+SF RPN+R+ +
Sbjct: 185 DGPTRREIVERLGLENGRVF-LSSFDRPNIRYRI 217
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 89/168 (52%), Gaps = 4/168 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
+IY +R + A+ L G A Y+A L R F + + ++VATIAFGMG
Sbjct: 240 VIYCMSRAKVEQTAQALVDEGRFALPYHAGLDAETRARHQDRFLKEEGVIMVATIAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL---PSRRSED 632
IDK +VR ++H P+S+EAYYQE GRAGRDG ++ +L + + L+ + + D
Sbjct: 300 IDKPDVRFVVHLDLPKSIEAYYQETGRAGRDGLPSEALLLYGVEDVAKLIQFVEASDAPD 359
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVD 680
K+ R D T+ CR ++L+ YF E E C CD C++
Sbjct: 360 ARKRVERQKLDALLGLCETASCRRQVLLSYFEETLD-EPCGNCDTCLE 406
>gi|58581346|ref|YP_200362.1| DNA helicase [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84623279|ref|YP_450651.1| DNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188577416|ref|YP_001914345.1| ATP-dependent DNA helicase RecQ [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|58425940|gb|AAW74977.1| DNA helicase [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84367219|dbj|BAE68377.1| DNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188521868|gb|ACD59813.1| ATP-dependent DNA helicase RecQ [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 598
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 128/216 (59%), Gaps = 15/216 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ LL + FG+ + Q+ + A +D LVL TG GKSLC+Q+PALL + +V+SP
Sbjct: 6 HELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIGIVVSP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ L + GV A FL S + +VE+ L G ++YV PE + L +
Sbjct: 66 LIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERL--LTQRF 123
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + IP MALTA
Sbjct: 124 LSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HIPRMALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA + +I + L + FV +SF RPN+R++V
Sbjct: 175 TADPPTQREIAERLDLVDARHFV-SSFDRPNIRYTV 209
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A+ LC G A Y+A LP F ++ ATIAFGMG
Sbjct: 232 IVYAMSRRKVEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+SLE YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 292 IDKPDVRFVAHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDVVLLKQMIEQGEAAE 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ K+ R D + CR ++L+ FGE + + C CD C+
Sbjct: 352 ERKRLERAKLDHLLGYCESMQCRRQVLLAGFGETYP-KPCGNCDNCL 397
>gi|289661988|ref|ZP_06483569.1| ATP-dependent DNA helicase RecQ [Xanthomonas campestris pv.
vasculorum NCPPB 702]
gi|289667018|ref|ZP_06488093.1| ATP-dependent DNA helicase RecQ [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 598
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 128/216 (59%), Gaps = 15/216 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ LL + FG+ + Q+ + A +D LVL TG GKSLC+Q+PALL + +V+SP
Sbjct: 6 HELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIGIVVSP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ L + GV A FL S + +VE+ L G ++YV PE + L +
Sbjct: 66 LIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERL--LTQRF 123
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + IP MALTA
Sbjct: 124 LSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HIPRMALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA + +I + L + FV +SF RPN+R++V
Sbjct: 175 TADPPTQREIAERLDLVDARHFV-SSFDRPNIRYTV 209
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A+ LC G A Y+A LP F ++ ATIAFGMG
Sbjct: 232 IVYAMSRRKVEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+SLE YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 292 IDKPDVRFVAHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDVVLLKQMIEQGEAAE 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ K+ R D + CR ++L+ FGE + + C CD C+
Sbjct: 352 ERKRLERAKLDHLLGYCESMQCRRQVLLAGFGETYP-KPCGNCDNCL 397
>gi|350593451|ref|XP_003133429.3| PREDICTED: Werner syndrome ATP-dependent helicase [Sus scrofa]
Length = 1443
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 124/211 (58%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D +V+ ATG GKSLCFQ P + G + +VISPLI
Sbjct: 543 LKTYFGHSSFKPVQWKVIHSILEERRDNVVVMATGYGKSLCFQYPPVSVGGIGLVISPLI 602
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q N +E L G Y I+Y+ PE + LQ L
Sbjct: 603 SLMEDQVLQLEMSNIPACFLGSAQSKNVLEDIKL-GKYRIVYLTPEFCSGNLDLLQHLEA 661
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ GI + A+DE HC+S+WGHDFR +R L +LKS +P++ALTAT T
Sbjct: 662 NIGITVIAVDEAHCISEWGHDFRNSFRTL---------GSLKSALPLVPIVALTATGTSS 712
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+REDI++ L + K + T F RPNL V
Sbjct: 713 IREDIVRCLKL-KDPQITCTGFDRPNLYLEV 742
Score = 112 bits (280), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 105/179 (58%), Gaps = 15/179 (8%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A L ++VH +F ++++ V+ATIA
Sbjct: 768 EGPTIIYCPSRKMTEQVTAELKKLKLACETYHAGLSIHLRKQVHHKFMRDEIQCVIATIA 827
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C +L+ A+++ LL
Sbjct: 828 FGMGINKADIRKVIHYGAPKEIESYYQEIGRAGRDGLQSSCHILWAPADINLNRHLLSEI 887
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGED---------FSHEKCQLCDVC 678
+E+ +M++ +Y +++S CR +I++ +F + EKC CD C
Sbjct: 888 CNENFRLYKLKMMAKMEKY-LHSSRCRRQIILSHFEDKQLRKASLGIMGTEKC--CDNC 943
>gi|334330890|ref|XP_001372295.2| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase [Monodelphis domestica]
Length = 1391
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 126/211 (59%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D LV+ ATG GKSLCFQ P + G + +V+SPLI
Sbjct: 574 LKTYFGHSSFKPVQWKVIHSVLQERRDNLVVMATGYGKSLCFQFPPVFVGGIGIVVSPLI 633
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q +N V + G + ++Y+ PE + + L++L
Sbjct: 634 SLMEDQVLQLEMSNIKACFLGSAQSEN-VISRVKAGEFRVVYMTPEFCLVSLDLLKQLDA 692
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ GI L A+DE HCVS+WGHDFR +R L +L+ + +P++ALTATA+
Sbjct: 693 TLGITLVAVDEAHCVSEWGHDFRNAFRNLGLLKTTLPS---------VPMLALTATASSS 743
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+R DI L++ + + TSF RPNL V
Sbjct: 744 IRADIAHCLYL-RDPQVTCTSFDRPNLYLDV 773
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 138/279 (49%), Gaps = 35/279 (12%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK + + L + Y+A + R +H +F ++++ V+AT+A
Sbjct: 799 EGPTIIYCPSRKISEQVTVELRKLDLACGTYHAGMGIKSRREIHHKFMRDEIQCVIATVA 858
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ A+++ LL
Sbjct: 859 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLPSACHVLWTPADINFNRLLLSDI 918
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC--------QLCDVCV- 679
++++ + +M+ +Y + +S CR KI++ +F ED K Q CD C
Sbjct: 919 QNDNFRQYKLKMMRQLEKY-LQSSNCRRKIILSHF-EDKQLRKASLGIMGTEQCCDNCRA 976
Query: 680 ---------DGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNL 730
D +K+ +A L+ + ++ GI + F+ N
Sbjct: 977 RLNNPHSGDDSEENLKDFGPQAYKLLSAVCVLGQKF-------GIGMPV---LFLRGSNS 1026
Query: 731 KMFVSKIREQSQKYLATDLL--WWRGLARIMENKGYIRE 767
+ K R D L WW+ LAR + +G++ E
Sbjct: 1027 QRLPDKFRRHCLFGGGKDHLESWWKALARQLILEGFLEE 1065
>gi|294667047|ref|ZP_06732274.1| DNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292603204|gb|EFF46628.1| DNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 598
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 128/216 (59%), Gaps = 15/216 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ LL + FG+ + Q+ + A +D LVL TG GKSLC+Q+PALL + +V+SP
Sbjct: 6 HELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIGIVVSP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ L + GV A FL S + +VE+ L G ++YV PE + L +
Sbjct: 66 LIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERL--LTQRF 123
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + IP MALTA
Sbjct: 124 LSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HIPRMALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA + +I + L + FV +SF RPN+R++V
Sbjct: 175 TADPPTQREIAERLDLVDARHFV-SSFDRPNIRYTV 209
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A+ LC G A Y+A LP F ++ ATIAFGMG
Sbjct: 232 IVYAMSRRKVEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+SLE YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 292 IDKPDVRFVAHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDVVLLKQMIEQGDAAE 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ K+ R D + CR ++L+ FGE + + C CD C+
Sbjct: 352 ERKRLERAKLDHLLGYCESMQCRRQVLLAGFGETYP-KPCGNCDNCL 397
>gi|78048811|ref|YP_364986.1| DNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|78037241|emb|CAJ24986.1| DNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10]
Length = 598
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/229 (42%), Positives = 134/229 (58%), Gaps = 16/229 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ LL + FG+ + Q+ + A +D LVL TG GKSLC+Q+PALL + +V+SP
Sbjct: 6 HELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIGIVVSP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ L + GV A FL S + +VE+ L G ++YV PE + L +
Sbjct: 66 LIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERL--LTQRF 123
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + IP MALTA
Sbjct: 124 LSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HIPRMALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKK 387
TA + +I + L + FV +SF RPN+R++V K S+R ++
Sbjct: 175 TADPPTQREIAERLDLVDARHFV-SSFDRPNIRYTVVQ-KDSARKQLQE 221
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 4/167 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A+ LC G A Y+A LP F ++ ATIAFGMG
Sbjct: 232 IVYAMSRRKVEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+SLE YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 292 IDKPDVRFVAHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDVVLLKQMIEQGEAAE 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ K+ R D + CR ++L+ FGE ++ + C CD C+
Sbjct: 352 ERKRLERAKLDHLLGYCESMQCRRQVLLAGFGETYA-KPCGNCDNCL 397
>gi|423239789|ref|ZP_17220905.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL03T12C01]
gi|392645829|gb|EIY39552.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL03T12C01]
Length = 605
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 136/240 (56%), Gaps = 22/240 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q++ + L D LVL TG GKS+C+Q+PALL +V+SPLIS
Sbjct: 5 LKNYFGYDSFRPLQQDIIQNILTQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + ++ L+G ++Y+ PE RL+ L
Sbjct: 65 LMKDQVESLQANGIAARALNSSNNETENINLRRECLQGKIKLLYISPE---RLLIETNFL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+ I+LFAIDE HC+S+WGHDFRP+Y +L VLR F +P++ALTATA
Sbjct: 122 LKDIQISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPK---------VPIVALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKK 401
R+DI + L + K K ++SF RPNL VK R +KD + I + +K K
Sbjct: 173 KITRKDIAQQLAL-KDPKIFISSFDRPNLSLEVK------RGYQQKDKARTILEFIEKHK 225
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 119/216 (55%), Gaps = 12/216 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A L G++A Y+A L + +F ++++VV ATIAFGMG
Sbjct: 230 IIYCMSRSKTENVAAMLMKQGIRATVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L + L Q +
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMESDTLLFYSLGDLVMLSKFATESSQQE 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
L +Y + CR +IL+ YFGE H+ C CDVC + PPE + + I+
Sbjct: 350 INLEKLHRMQQYA-ESDICRRRILLNYFGETMDHD-CGNCDVCRN-PPE----RFDGTII 402
Query: 696 MQ----VIAAYNEQSNSMDDDDGIYSGIKKQKFMDR 727
+Q IA N+Q + D I G Q+ +D+
Sbjct: 403 VQKALSAIARTNQQIGTHMLID-ILKGSANQELIDK 437
>gi|325929340|ref|ZP_08190470.1| ATP-dependent DNA helicase RecQ [Xanthomonas perforans 91-118]
gi|325540252|gb|EGD11864.1| ATP-dependent DNA helicase RecQ [Xanthomonas perforans 91-118]
Length = 598
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 128/216 (59%), Gaps = 15/216 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ LL + FG+ + Q+ + A +D LVL TG GKSLC+Q+PALL + +V+SP
Sbjct: 6 HELLSRVFGYDDFRGPQQAIVEHVAAGNDVLVLMPTGGGKSLCYQVPALLRDGIGIVVSP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ L + GV A FL S + +VE+ L G ++YV PE + L +
Sbjct: 66 LIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERL--LTQRF 123
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + IP MALTA
Sbjct: 124 LSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HIPRMALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA + +I + L + FV +SF RPN+R++V
Sbjct: 175 TADPPTQREIAERLDLVDARHFV-SSFDRPNIRYTV 209
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A+ LC G A Y+A LP F ++ ATIAFGMG
Sbjct: 232 IVYAMSRRKVEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+SLE YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 292 IDKPDVRFVAHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDVVLLKQMIEQGEAAE 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ K+ R D + CR ++L+ FGE + + C CD C+
Sbjct: 352 ERKRLERAKLDHLLGYCESMQCRRQVLLAGFGETYP-KPCGNCDNCL 397
>gi|282896865|ref|ZP_06304871.1| ATP-dependent DNA helicase RecQ [Raphidiopsis brookii D9]
gi|281198274|gb|EFA73164.1| ATP-dependent DNA helicase RecQ [Raphidiopsis brookii D9]
Length = 719
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 140/244 (57%), Gaps = 22/244 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LKK+FG+ + Q++ + L + D +V+ TG GKSLCFQ+PALL + VV+SPLI+
Sbjct: 10 LKKYFGYDQFRPGQRQIIEDALENRDLMVVMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 69
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L + ++A + S +V E+ + G ++YV PE ++ R + L
Sbjct: 70 LMQDQVEALRNNNISATLINSSLTTYQVRSREEAIMNGKVKLLYVAPERLVSERFLPILD 129
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ E G+A F IDE HCVS+WGHDFRP+YR+L +LR+ F +P +ALTAT
Sbjct: 130 VVKEKFGLANFVIDEAHCVSEWGHDFRPEYRQLILLRKRFS---------HVPTIALTAT 180
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKK 399
AT +VR DI++ L + K + SF R NL + V R + + ++++I K
Sbjct: 181 ATDRVRADIIQQLGL-KQPAVHIASFNRQNLYYEV-------RPKNRNSYGEILEIIKKN 232
Query: 400 KKTG 403
+ +G
Sbjct: 233 EGSG 236
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 112/216 (51%), Gaps = 7/216 (3%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G IIY TRK + L + A Y+A L + + T F + + ++VATIA
Sbjct: 233 EGSGIIYCLTRKNVDELTLKLQNSQIAALPYHAGLVDQERAKNQTRFIRDDVRIMVATIA 292
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPS--RR 629
FGMGI+K +VR +IH P++LE+YYQE+GRAGRDG + C L+ + S + T+ S ++
Sbjct: 293 FGMGINKPDVRFVIHCDLPRNLESYYQESGRAGRDGEPSRCTLFFSFSDVKTIEWSIGKK 352
Query: 630 SEDQTKQ-AYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
++ Q + A + L Y T CR I + YFGE F C CD C P +++
Sbjct: 353 TDPQEQLIAKQQLRQVIDYAEGTD-CRRTIQLGYFGERFPG-GCANCDNC-RYPKPLQDW 409
Query: 689 KEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKF 724
EA + +A E+ M+ + G K QK
Sbjct: 410 TVEAMKFLSCVARCQEKY-GMNHIIDVLRGAKNQKI 444
>gi|384420234|ref|YP_005629594.1| ATP-dependent DNA helicase RecQ [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353463147|gb|AEQ97426.1| ATP-dependent DNA helicase RecQ [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 598
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 131/221 (59%), Gaps = 17/221 (7%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ LL + FG+ + Q+ + A +D LVL TG GKSLC+Q+PALL + +V+SP
Sbjct: 6 HELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIGIVVSP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ L + GV A FL S + +VE+ L G ++YV PE + L +
Sbjct: 66 LIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERL--LTQRF 123
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + IP MALTA
Sbjct: 124 LSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HIPRMALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHS 377
TA + +I + L + FV +SF RPN+R++V KH+
Sbjct: 175 TADPPTQREIAERLDLVDARHFV-SSFDRPNIRYTVVQKHN 214
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A+ LC G A Y+A LP F ++ ATIAFGMG
Sbjct: 232 IVYAMSRRKVEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+SLE YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 292 IDKPDVRFVAHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDVVLLKQMIEQGEAAE 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ K+ R D + CR ++L+ FGE + + C CD C+
Sbjct: 352 ERKRLERAKLDHLLGYCESMQCRRQVLLAGFGETYP-KPCGNCDNCL 397
>gi|325914180|ref|ZP_08176533.1| ATP-dependent DNA helicase RecQ [Xanthomonas vesicatoria ATCC
35937]
gi|325539683|gb|EGD11326.1| ATP-dependent DNA helicase RecQ [Xanthomonas vesicatoria ATCC
35937]
Length = 600
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 128/216 (59%), Gaps = 15/216 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ LL + FG+ + Q+ + A +D LVL TG GKSLC+Q+PALL + +V+SP
Sbjct: 6 HELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIGIVVSP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ L + GV A FL S + +VE+ L G ++YV PE + L +
Sbjct: 66 LIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERL--LTQRF 123
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + IP MALTA
Sbjct: 124 LSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HIPRMALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA + +I + L + FV +SF RPN+R++V
Sbjct: 175 TADPPTQREIAERLDLVDARHFV-SSFDRPNIRYTV 209
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A+ LC G A Y+A LP F ++ ATIAFGMG
Sbjct: 232 IVYAMSRRKVEETAQQLCAQGFHALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+SLE YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 292 IDKPDVRFVAHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDVVLLKQMIEQGEAAE 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ K+ R D + CR ++L+ FGE + + C CD C+
Sbjct: 352 ERKRLERAKLDHLLGYCESMQCRRQVLLAGFGETYP-KPCGNCDNCL 397
>gi|389795781|ref|ZP_10198890.1| ATP-dependent DNA helicase RecQ [Rhodanobacter fulvus Jip2]
gi|388430112|gb|EIL87306.1| ATP-dependent DNA helicase RecQ [Rhodanobacter fulvus Jip2]
Length = 605
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 131/224 (58%), Gaps = 19/224 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LL+ FG+ S + Q+ + D LVL TG GKSLC+Q+PALL +V+SPLI
Sbjct: 8 LLQSVFGYPSFRGQQQAVVEHLGEGGDALVLMPTGGGKSLCYQVPALLRQGTGIVVSPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ L + GV A FL S +VE++ G +++YV PE ++ R + L
Sbjct: 68 ALMQDQVDALREAGVAAAFLNSSLAAGEQREVERQLEAGELNLLYVAPERLLTGRFLAQL 127
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+R +ALFAIDE HCVS+WGHDFRP+YR L++L+E F +P +ALTA
Sbjct: 128 ERTE----VALFAIDEAHCVSQWGHDFRPEYRELAILQERFP---------QVPRIALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
TA + RE+I++ L + +FV +SF RPN+ + V + R
Sbjct: 175 TADPRTREEIVERLSLQNARQFV-SSFDRPNIGYRVGLRHNAKR 217
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A +L GV+A Y+A L + + F V+VAT+AFGMG
Sbjct: 232 IVYCLSRRKVDDTAAWLAESGVEALPYHAGLDAATRAKNQKRFLREDGVVMVATVAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS---SMPTLLPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG A+ + LS +M ++ S D
Sbjct: 292 IDKPDVRFVAHLDLPRSIEGYYQETGRAGRDGLPAEAWMIYGLSDVVTMSQMIAQSESAD 351
Query: 633 QTKQAYRM-LSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ K+ R L Y T CR ++L+ FGE + C CD C+ PP+
Sbjct: 352 ERKRVERQKLESLLAYAEATD-CRRQLLLGAFGESYPG-PCGHCDNCI-APPK 401
>gi|443324439|ref|ZP_21053192.1| ATP-dependent DNA helicase RecQ [Xenococcus sp. PCC 7305]
gi|442795958|gb|ELS05292.1| ATP-dependent DNA helicase RecQ [Xenococcus sp. PCC 7305]
Length = 709
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 133/234 (56%), Gaps = 15/234 (6%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ S LK FG+ S + Q++ + L + D LV+ TG GKSLCFQ+PALL + +V+S
Sbjct: 5 LESALKHFFGYDSFRAGQRKIIEEALNNQDLLVIMPTGGGKSLCFQLPALLKEGLTIVVS 64
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSG--QPDNKVEQKA-LRGMYSIIYVCPETVI--RLI 275
PLI+LM DQ L +G+ A FL S + + Q+A L G ++YV PE ++ +
Sbjct: 65 PLIALMKDQVDALQDNGIGATFLNSTLDYAEGRSRQEAILAGKIKLLYVAPERLLTEKFR 124
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L R+A G+ AIDE HCVS+WGHDFRP+YR+L LR F P+ A
Sbjct: 125 SFLLRVANGLGLNAIAIDEAHCVSEWGHDFRPEYRQLKQLRSQFPQT---------PIFA 175
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDF 389
TATAT +V++DI++ L + + L SF RPNL + VK +S KD
Sbjct: 176 FTATATKRVQDDIIQQLGL-RDANVHLASFNRPNLHYEVKSKDKNSYYQLLKDI 228
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 95/176 (53%), Gaps = 5/176 (2%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+ G I+Y +R+ IA L G+ A Y+A L T F + V+VAT+
Sbjct: 231 QSGSGIVYCLSRRRVEEIALKLKHDGIDALPYHAGLEAEVRSHNQTRFLRDDARVIVATV 290
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPS 627
AFGMGI+K +VR + H+ P+SLE++YQE+GRAGRDG A L + ++ + L+
Sbjct: 291 AFGMGINKPDVRFVFHFDLPRSLESFYQESGRAGRDGETAKSTLFFSFGDIKKVDYLIEQ 350
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPP 683
+ ++ + A + L+ Y T CR I++ YFGE F + C CD C++ P
Sbjct: 351 KPDPNEQRIARQQLNQVIDYAEGT-VCRRTIILRYFGERFGGD-CGRCDNCLEPKP 404
>gi|73542870|ref|YP_297390.1| ATP-dependent DNA helicase RecQ [Ralstonia eutropha JMP134]
gi|72120283|gb|AAZ62546.1| ATP-dependent DNA helicase RecQ [Ralstonia eutropha JMP134]
Length = 615
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 133/221 (60%), Gaps = 23/221 (10%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVV 218
++LK FG+ + + Q E + DCLVL TG GKSLC+QIPALL + V +V
Sbjct: 6 AILKDVFGYHAFRGRQGEIIDHVATGGDCLVLMPTGGGKSLCYQIPALLRQRAGEGVGIV 65
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLI 275
+SPLI+LM DQ + L++ GV A L S ++ VE+ L G I+YV PE RL+
Sbjct: 66 VSPLIALMQDQVAALTEAGVRASVLNSTLTSSEASAVERDLLAGRLEILYVAPE---RLM 122
Query: 276 KP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
P L L +R + LFAIDE HCVS+WGHDFRP+Y +LSVL E F D+P
Sbjct: 123 TPRFLDLLGRAR-VGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------DVPR 172
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+ALTATA R++I++ L + F+ +SF RPN+R+ +
Sbjct: 173 IALTATADALTRDEIIERLALDDARVFI-SSFDRPNIRYRI 212
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 6/187 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+ A++L G G+ A Y+A + +R F E + V+VATIAFGMG
Sbjct: 241 IVYCLSRKKVEDTAEWLQGHGLNALPYHAGMDPGTRQRHQARFREEEGLVMVATIAFGMG 300
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM---PTLLPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG A+ + L + ++ ++D
Sbjct: 301 IDKPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGDVVQQKRMIDESEADD 360
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
K+ D T+ CR ++ YF E + E C CD C++ PP + EA
Sbjct: 361 AFKRVSSSKLDALLGLCETAGCRRVRILAYFNE--TSEPCGNCDTCLE-PPATWDGTREA 417
Query: 693 NILMQVI 699
+ + +
Sbjct: 418 QMALSCV 424
>gi|160886583|ref|ZP_02067586.1| hypothetical protein BACOVA_04594 [Bacteroides ovatus ATCC 8483]
gi|423289735|ref|ZP_17268585.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus CL02T12C04]
gi|156108468|gb|EDO10213.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus ATCC 8483]
gi|392667446|gb|EIY60956.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus CL02T12C04]
Length = 608
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 128/223 (57%), Gaps = 16/223 (7%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
D + LK +FG+ S + Q+E + L D LVL TG GKS+C+Q+PALL
Sbjct: 2 DKSASMRETLKTYFGYDSFRPLQEEIIRHILNKQDALVLMPTGGGKSICYQLPALLCEGT 61
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVI 272
VV+SPLISLM DQ L +G+ A L S + ++ + + G ++Y+ PE
Sbjct: 62 AVVVSPLISLMKDQVEALLANGIAAGALNSSNDETENVQLRRACVEGRLKLLYISPE--- 118
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
+L+ L I+LFAIDE HC+S+WGHDFRP+Y ++ VL + F IP
Sbjct: 119 KLLAEKDYLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFP---------QIP 169
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
++ALTATA REDI++ LH++ F+ +SF RPN+ +VK
Sbjct: 170 IVALTATADKITREDIVRQLHLNHPRIFI-SSFDRPNISLTVK 211
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 95/169 (56%), Gaps = 3/169 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L +F ++++VV ATIAFGMG
Sbjct: 236 IIYCMSRNKTETVAQMLQKQGIRCGVYHAGLSTQHRDETQNDFINDRIQVVCATIAFGMG 295
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG + VL+ +L + L +Q
Sbjct: 296 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSSTVLFYSLGDLILLTKFASESNQQS 355
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
L +Y CR +IL+ YFGE + E C CDVC PP+
Sbjct: 356 INLEKLQRMQQYA-EADICRRRILLSYFGET-TTEDCGNCDVC-KNPPQ 401
>gi|383113297|ref|ZP_09934070.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D2]
gi|382948819|gb|EFS32303.2| ATP-dependent DNA helicase RecQ [Bacteroides sp. D2]
Length = 608
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 128/223 (57%), Gaps = 16/223 (7%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
D + LK +FG+ S + Q+E + L D LVL TG GKS+C+Q+PALL
Sbjct: 2 DKSASMRETLKTYFGYDSFRPLQEEIIHHVLNKQDTLVLMPTGGGKSICYQLPALLCEGT 61
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVI 272
VV+SPLISLM DQ L +G+ A L S + + + + + G ++Y+ PE
Sbjct: 62 AVVVSPLISLMKDQVEALLANGIAAGALNSSNDETENANLRRACIEGRLKLLYISPE--- 118
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
+L+ L I+LFAIDE HC+S+WGHDFRP+Y ++ VL + F IP
Sbjct: 119 KLLAEKDYLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFP---------QIP 169
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
++ALTATA REDI++ LH++ F+ +SF RPN+ +VK
Sbjct: 170 IIALTATADKITREDIVRQLHLNHPRVFI-SSFDRPNISLTVK 211
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 96/169 (56%), Gaps = 3/169 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L +F ++++VV ATIAFGMG
Sbjct: 236 IIYCMSRSKTETVAQMLQKQGIRCGVYHAGLSTQHRDETQNDFINDRIQVVCATIAFGMG 295
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG + VL+ +L + L +Q
Sbjct: 296 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSSTVLFYSLGDLILLTKFASESNQQS 355
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
L +Y CR +IL+ YFGE + E C CDVC + PP+
Sbjct: 356 INLEKLQRMQQYA-EADICRRRILLSYFGET-TTEDCGNCDVCKN-PPQ 401
>gi|332534725|ref|ZP_08410553.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas haloplanktis
ANT/505]
gi|332035812|gb|EGI72296.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas haloplanktis
ANT/505]
Length = 596
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 137/220 (62%), Gaps = 17/220 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K ++LK+ FG+S ++ QK + A + D LVL TG GKS+C+QIPAL+ V +VI
Sbjct: 3 KPETVLKQVFGYSEFRDGQKAVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVI 62
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ ++L GV A ++ + + V Q+ +G ++YV PE V++ +
Sbjct: 63 SPLISLMQDQVTQLQALGVKAAYVNNSLAREEQQLVYQQLHQGQIKLLYVAPEKVLQR-E 121
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L+RL+ ++LFAIDE HCVS WGHDFRP Y RL+ L++ F +P+MAL
Sbjct: 122 FLERLSHL-NVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFA---------HVPMMAL 171
Query: 337 TATATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSVK 375
TATA R DI++ L + + ++ T SF RPN+R++++
Sbjct: 172 TATADKATRFDIVEQLKLQQ--PYIHTGSFDRPNIRYTIE 209
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 101/176 (57%), Gaps = 17/176 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK IA+ L G+ AAAY+A + Q + V T F + +++VVAT+AFGMG
Sbjct: 231 IIYCTSRKRVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMG 290
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPS----- 627
I+K NVR ++HY P+S+E+YYQE GRAGRDG A+ ++Y A++ +
Sbjct: 291 INKPNVRFVLHYDIPKSIESYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQ 350
Query: 628 -RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
RR E+Q A ++ CR +IL+ YF E + E C CD+C++ P
Sbjct: 351 RRRVEEQRFNAMASFAEA-------QTCRRQILLNYFSE-YQREPCGNCDICLNPP 398
>gi|298480716|ref|ZP_06998912.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D22]
gi|298273150|gb|EFI14715.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D22]
Length = 621
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 135/234 (57%), Gaps = 17/234 (7%)
Query: 146 SCPKEVEIGS-DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLC 204
+C +++ + S D + LK +FG+ + + Q+E + L D LVL TG GKS+C
Sbjct: 4 NCQRKMYLCSMDKSASMRETLKTYFGYDNFRPLQEEIIRHILNKQDALVLMPTGGGKSIC 63
Query: 205 FQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMY 261
+Q+PALL VV+SPLISLM DQ L +G+ A L S + + + + + G
Sbjct: 64 YQLPALLCEGTAVVVSPLISLMKDQVEALLANGIAAGALNSSNDETENANLRRACIEGRL 123
Query: 262 SIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGA 321
++Y+ PE +L+ L I+LFAIDE HC+S+WGHDFRP+Y ++ VL + F
Sbjct: 124 KLLYISPE---KLLAEKDYLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFP- 179
Query: 322 NNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
IP++ALTATA REDI++ LH++ F+ +SF RPN+ +VK
Sbjct: 180 --------QIPIVALTATADKITREDIVRQLHLNHPRTFI-SSFDRPNISLTVK 224
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 97/169 (57%), Gaps = 3/169 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L +F ++++VV ATIAFGMG
Sbjct: 249 IIYCMSRSKTETVAQMLQKQGIRCGVYHAGLSTQHRDETQNDFINDRIQVVCATIAFGMG 308
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG ++ VL+ +L + L +Q
Sbjct: 309 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSNTVLFYSLGDLILLTKFASESNQQN 368
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
L +Y CR +IL+ YFGE + E C CDVC + PP+
Sbjct: 369 INLEKLQRMQQYA-EADICRRRILLSYFGET-TTEDCGNCDVCKN-PPQ 414
>gi|434393955|ref|YP_007128902.1| ATP-dependent DNA helicase RecQ [Gloeocapsa sp. PCC 7428]
gi|428265796|gb|AFZ31742.1| ATP-dependent DNA helicase RecQ [Gloeocapsa sp. PCC 7428]
Length = 602
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 132/226 (58%), Gaps = 15/226 (6%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ S LK +FG+ S + Q+ + L + D LV+ TG GKSLCFQ+PALL + VV+S
Sbjct: 7 LESALKHYFGYDSFRPGQRCIVEQALQNRDLLVVMPTGGGKSLCFQLPALLKKGLTVVVS 66
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLI 275
PLI+LM DQ L +G+ A F+ S V EQ L G ++Y+ PE ++ + +
Sbjct: 67 PLIALMQDQVEALQDNGIGATFINSSLSAYHVRTREQAILSGKVKLLYIAPERLLSEKFL 126
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L + GI+ FAIDE HCVS+WGHDFRP+YR+L LR F +P +A
Sbjct: 127 PFLDLVHHQMGISAFAIDEAHCVSEWGHDFRPEYRQLQQLRHRFSG---------VPTIA 177
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
LTATAT +VR+DI++ L + + + + SF R NL + V+ + S
Sbjct: 178 LTATATERVRQDIIQQLGLVEPSVHI-ASFNRQNLFYEVQPKQKQS 222
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 128/264 (48%), Gaps = 19/264 (7%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G IIY +R+ IA L G+ A Y+A L T F + ++V+VATIAF
Sbjct: 235 GAGIIYCLSRRRVDEIAFKLKNDGIAALPYHAGLSDRDRTANQTSFIRDDVQVMVATIAF 294
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPSRR 629
GMGI+K +VR +IHY P++LE+YYQE+GRAGRDG A C L+ N + T L+ +
Sbjct: 295 GMGINKPDVRFVIHYDLPRNLESYYQESGRAGRDGEPARCTLFLNYGDIKTIEYLIAQKP 354
Query: 630 SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLK 689
+ + A + L Y T CR I + YFGE FS KC CD C P M++
Sbjct: 355 DPQEQRIAKQQLRQVIDYAEGTD-CRRTIQLSYFGERFSG-KCDNCDNCCH-PKPMQDWT 411
Query: 690 EEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMD--RPNLKMF-VSKIREQSQKYLA 746
EA + +A E+ D + G K QK + NL + + K R
Sbjct: 412 IEAMKFLSCVARCKERFGMTYIID-VLRGAKNQKILQNGHQNLSTYGIGKDRSIDD---- 466
Query: 747 TDLLWWRGLARIMENKGYIREGDD 770
WR L R + ++G + + D
Sbjct: 467 -----WRMLGRSLLHQGLLAQTTD 485
>gi|386399772|ref|ZP_10084550.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. WSM1253]
gi|385740398|gb|EIG60594.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. WSM1253]
Length = 623
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 139/234 (59%), Gaps = 21/234 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+L+ FG + Q E + +CLVL TG GKSLC+Q+PALL VV+SPL
Sbjct: 22 SVLRSVFGLPGFRGAQGEIIRHVTDGGNCLVLMPTGGGKSLCYQLPALLREGCGVVVSPL 81
Query: 223 ISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKP-- 277
I+LM DQ + + + GV A L S Q + +E++ + G ++YV PE RL+ P
Sbjct: 82 IALMRDQVAAMLEAGVNAAALNSSLTPQEASDIERRLIAGDLDLLYVAPE---RLLTPRC 138
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L LA ++ +ALFAIDE HCVS+WGHDFRP+Y LSV+ E F D+P +ALT
Sbjct: 139 LALLARAK-VALFAIDEAHCVSQWGHDFRPEYVGLSVIAERFP---------DVPRIALT 188
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQ 391
ATA R++I++ LH++ FV +SF RPN+R+ + + + S KDF +
Sbjct: 189 ATADELTRKEIVERLHLADSPHFV-SSFDRPNIRYEIVDKRNA--VSQLKDFIR 239
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 139/297 (46%), Gaps = 22/297 (7%)
Query: 479 SPHRDRDTDRS---FERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF 535
SPH DR +E D N ++ ++E ++Y +RK +A L
Sbjct: 208 SPHFVSSFDRPNIRYEIVDKRNAVSQLKDFIRERHAGDAGVVYCLSRKRVEEVAAALDDA 267
Query: 536 GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEA 595
G+ A Y+A L S R F V+VATIAFGMGIDK +VR + H P+S+EA
Sbjct: 268 GIAALPYHAGLDSSVRSRNQDRFLNEDGIVIVATIAFGMGIDKPDVRFVAHLDLPKSIEA 327
Query: 596 YYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQA--YRMLS----DCFRYGM 649
YYQE GRAGRDG + + LS ++ RR D++ + ++ +S D
Sbjct: 328 YYQETGRAGRDGKPSAAWMAYGLSD---IVQQRRMIDESSGSDEFKRVSIGKLDALVGLA 384
Query: 650 NTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSM 709
T CR + L+ YFGE E C CD C+ PP+M++ K A L+ ++ +M
Sbjct: 385 ETPHCRRRRLLAYFGEIVMGEGCGNCDNCL-MPPKMRDGKVLAQKLLSCAYRTGQRFGAM 443
Query: 710 DDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYI 765
D + G +K + K+ V I RE ++K WR + R + G++
Sbjct: 444 HLID-VLIGRLTEKVTQFGHDKLTVFGIGRELNEKQ-------WRTVLRQLVAMGHL 492
>gi|294644712|ref|ZP_06722461.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus SD CC 2a]
gi|294805927|ref|ZP_06764794.1| ATP-dependent DNA helicase RecQ [Bacteroides xylanisolvens SD CC
1b]
gi|292639975|gb|EFF58244.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus SD CC 2a]
gi|294446809|gb|EFG15409.1| ATP-dependent DNA helicase RecQ [Bacteroides xylanisolvens SD CC
1b]
Length = 621
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 135/234 (57%), Gaps = 17/234 (7%)
Query: 146 SCPKEVEIGS-DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLC 204
+C +++ + S D + LK +FG+ + + Q+E + L D LVL TG GKS+C
Sbjct: 4 NCQRKMYLCSMDKSASMRETLKTYFGYDNFRPLQEEIIRHILNKQDALVLMPTGGGKSIC 63
Query: 205 FQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMY 261
+Q+PALL VV+SPLISLM DQ L +G+ A L S + + + + + G
Sbjct: 64 YQLPALLCEGTAVVVSPLISLMKDQVEALLANGIAAGALNSSNDETENANLRRACIEGRL 123
Query: 262 SIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGA 321
++Y+ PE +L+ L I+LFAIDE HC+S+WGHDFRP+Y ++ VL + F
Sbjct: 124 KLLYISPE---KLLAEKDYLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFP- 179
Query: 322 NNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
IP++ALTATA REDI++ LH++ F+ +SF RPN+ +VK
Sbjct: 180 --------QIPIVALTATADKITREDIVRQLHLNHPRTFI-SSFDRPNISLTVK 224
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 97/169 (57%), Gaps = 3/169 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L +F ++++VV ATIAFGMG
Sbjct: 249 IIYCMSRSKTETVAQMLQKQGIRCGVYHAGLSTQHRDETQNDFINDRIQVVCATIAFGMG 308
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG ++ VL+ +L + L +Q
Sbjct: 309 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSNTVLFYSLGDLILLTKFASESNQQN 368
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
L +Y CR +IL+ YFGE + E C CDVC + PP+
Sbjct: 369 INLEKLQRMQQYA-EADICRRRILLSYFGET-TTEDCGNCDVCKN-PPQ 414
>gi|160888701|ref|ZP_02069704.1| hypothetical protein BACUNI_01119 [Bacteroides uniformis ATCC 8492]
gi|156861600|gb|EDO55031.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis ATCC 8492]
Length = 603
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 130/216 (60%), Gaps = 20/216 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q++ + + D LVL TG GKS+C+Q+PALL+ VV+SPLIS
Sbjct: 5 LKTYFGYDSFRPLQEDIIRHLMDRKDALVLMPTGGGKSICYQLPALLSEGTAVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVIRLIKPLQ 279
LM DQ L +G+ A L S +++ E +LR G ++Y+ PE +L+
Sbjct: 65 LMKDQVETLCANGIAAGALNSN--NDETENASLRRACMEGKLKLLYISPE---KLLVEAN 119
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L I+LFAIDE HC+S+WGHDFRP+Y ++ +L + F +P++ALTAT
Sbjct: 120 YLLRDMHISLFAIDEAHCISQWGHDFRPEYTQMGILHQLFP---------QVPIIALTAT 170
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A REDI+K LH+++ F+ +SF RPNL +VK
Sbjct: 171 ADKITREDIIKQLHLNQPRIFI-SSFDRPNLSLTVK 205
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 112/180 (62%), Gaps = 9/180 (5%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566
+ P E G IIY +R + ++A+ L G+K+A Y+A L ++ +F ++++VV
Sbjct: 223 RHPGESG--IIYCMSRSKAETVAQMLQKQGIKSAVYHAGLSPARRDEAQDDFINDRVQVV 280
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLP 626
ATIAFGMGIDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L+ + +L
Sbjct: 281 CATIAFGMGIDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTLLFYSLADL--ILL 338
Query: 627 SRRSEDQTKQAYRM--LSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
++ + D +Q+ + L +Y CR +IL+ YFGE+ + + C CDVC PPE
Sbjct: 339 TKFATDSGQQSINLEKLQRMQQYA-EADICRRRILLSYFGENTTCD-CGNCDVC-KNPPE 395
>gi|415909075|ref|ZP_11553081.1| ATP-dependent DNA helicase, partial [Herbaspirillum frisingense
GSF30]
gi|407762664|gb|EKF71471.1| ATP-dependent DNA helicase, partial [Herbaspirillum frisingense
GSF30]
Length = 584
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/189 (48%), Positives = 120/189 (63%), Gaps = 17/189 (8%)
Query: 190 DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPD 249
D LVL TG GKSLC+Q+PALL VV+SPLI+LM DQ L++ GV A FL S Q
Sbjct: 16 DALVLMPTGGGKSLCYQVPALLRAGTGVVVSPLIALMQDQVDALAEVGVRAAFLNSTQSF 75
Query: 250 N---KVEQKALRGMYSIIYVCPETVIRLIKP-LQRLAESRGIALFAIDEVHCVSKWGHDF 305
+ ++E++ +G ++YV PE RL+ P L ES I+LFAIDE HCVS+WGHDF
Sbjct: 76 DEAMQIERRLRQGDLDLLYVAPE---RLMTPRCLELLESSRISLFAIDEAHCVSQWGHDF 132
Query: 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSF 365
RP+Y +LSVL E F +P +ALTATA Q RE+I+ L + +FV +SF
Sbjct: 133 RPEYIKLSVLHERFP---------QVPRIALTATADQQTREEIIHRLQLEDARQFV-SSF 182
Query: 366 FRPNLRFSV 374
RPN+R+ +
Sbjct: 183 DRPNIRYQI 191
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 106/228 (46%), Gaps = 28/228 (12%)
Query: 487 DRSFERTDLLNKPAERLSML-----QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
DR R ++ K R +L + P + G I+Y +RK+ A++L G G+ A A
Sbjct: 183 DRPNIRYQIVEKANGRKQLLDFIKSEHPEDAG--IVYCLSRKKVEETAEFLRGEGINALA 240
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A + + F V+VATIAFGMGIDK +VR + H P+S+E YYQE G
Sbjct: 241 YHAGMDYALRTANQARFLREDRIVMVATIAFGMGIDKPDVRFVCHLDLPKSVEGYYQETG 300
Query: 602 RAGRDGHLADCVLYANLSSMPTLLPSRRSED-----------QTKQAYRMLSDCFRYGMN 650
RAGRDG AD + L ++ RR D Q+ + MLS C
Sbjct: 301 RAGRDGLPADAWMAYGLQD---VVQQRRMIDESEADDSFKRVQSSKLDAMLSLC-----E 352
Query: 651 TSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQV 698
T CR L++YFGE C CD C+ P E +L V
Sbjct: 353 TLHCRRVHLLDYFGEKSG--PCGNCDTCLTPPVSFDATVEVQKLLSTV 398
>gi|391232165|ref|ZP_10268371.1| ATP-dependent DNA helicase RecQ [Opitutaceae bacterium TAV1]
gi|391221826|gb|EIQ00247.1| ATP-dependent DNA helicase RecQ [Opitutaceae bacterium TAV1]
Length = 620
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 125/213 (58%), Gaps = 15/213 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L FG+S + Q+E + A LA D L TG GKS+CFQ+PAL + VV+SPLI+
Sbjct: 8 LHTTFGYSGFRPLQREIIEASLAGRDVFALLPTGGGKSMCFQLPALHRTGLTVVVSPLIA 67
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL---RGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ +L GV A +L S + + RG + ++YV PE + ++ Q
Sbjct: 68 LMKDQVDQLQAAGVAATYLNSSLTSGEARSRLAGLHRGEWRLLYVAPERL--MLDNWQEN 125
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+ +A AIDE HC+S+WGHDFRP+YR+++ LRE ++P+MALTATAT
Sbjct: 126 LRAWNVAALAIDEAHCISEWGHDFRPEYRQIARLREFLP---------EVPVMALTATAT 176
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+VREDI+K L + + +V SF RPNL + V
Sbjct: 177 GRVREDIVKHLQLREPAVYV-ASFNRPNLSYRV 208
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 102/199 (51%), Gaps = 10/199 (5%)
Query: 489 SFERTDL------LNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF R +L ++P +++ + ED IIY TR A+ L G A Y
Sbjct: 198 SFNRPNLSYRVLPKDQPLKQIIDFVKKREDESGIIYCATRATAEKTAESLASRGYAARPY 257
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L F + ++++ ATIAFGMGI+K NVR +IH+ P+++E YYQE GR
Sbjct: 258 HAGLSADDRSANQELFLRDDVKIICATIAFGMGINKPNVRWVIHHDLPKNIEGYYQETGR 317
Query: 603 AGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG ADC+L ++ + + + A R L Y +T+ CR + L
Sbjct: 318 AGRDGLPADCLLLYSAGDIVKQTHFIDEITDAHEQQVARRQLRLMSHYAEDTT-CRRRTL 376
Query: 660 VEYFGEDFSHEKCQLCDVC 678
++YFGE F+ + C CD C
Sbjct: 377 LDYFGETFAIDNCGACDNC 395
>gi|427713763|ref|YP_007062387.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 6312]
gi|427377892|gb|AFY61844.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 6312]
Length = 730
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 129/216 (59%), Gaps = 17/216 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ + + Q + ++A L D L + TG GKS+CFQ+PALL + +V+SPLI+
Sbjct: 7 LKHYFGYEAFRPGQADIITASLNQQDVLAILPTGGGKSICFQLPALLKTGITLVVSPLIA 66
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L K+G+ A FL S + + + G ++YV PE ++ L+
Sbjct: 67 LMLDQVVALQKNGIAATFLNSTLSAAEARGRIAAIMAGEVKLLYVAPERLVSDSFTALLE 126
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ ++ GI+ +DE HCVS+WGHDFRPDYR+LS LRE F IP++ALTAT
Sbjct: 127 TIHQTVGISSIVVDEAHCVSEWGHDFRPDYRQLSRLRERFPT---------IPVIALTAT 177
Query: 340 ATIQVREDILKSLHMSKGTKFV-LTSFFRPNLRFSV 374
AT +VR DI + L + K FV + SF RPNL + V
Sbjct: 178 ATHRVRTDITEQLSLKK--PFVHVASFNRPNLYYEV 211
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 128/269 (47%), Gaps = 20/269 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G IIY +RK+ +A L G+ A Y+A L T F + ++++VAT+A
Sbjct: 232 EGSGIIYCMSRKQVEKLASELNENGISALPYHAGLSNETRTDHQTRFIRDDVQIMVATVA 291
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY--------ANLSSMPT 623
FGMGI+K +VR +IHY PQ++E YYQE+GRAGRDG A C L+ A+
Sbjct: 292 FGMGINKPDVRFVIHYDLPQTIEGYYQESGRAGRDGEPARCTLFFSPGDIKQADWFIQNK 351
Query: 624 LLPSRRS--EDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
+ P ED+ + A + L Y +++ CR L+ YFGE F C CD C
Sbjct: 352 VHPETNEPLEDEQRIARQQLRQIAAYA-DSTLCRRTTLLGYFGEVFGG-NCGQCDNC-RF 408
Query: 682 PPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQS 741
P ++ EA + +A NE+ D I G + K + + K+ I
Sbjct: 409 PKPKQDWTIEAQKFLSCVARTNERFGIRHIVD-ILRGSTQDKVIKYGHDKLSTFGIG--- 464
Query: 742 QKYLATDLLWWRGLARIMENKGYIREGDD 770
L + W+ LAR + + + E DD
Sbjct: 465 ---LDKSIKEWQHLARSLVQQNLVNESDD 490
>gi|336417153|ref|ZP_08597482.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus 3_8_47FAA]
gi|423298263|ref|ZP_17276322.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus CL03T12C18]
gi|335936778|gb|EGM98696.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus 3_8_47FAA]
gi|392663679|gb|EIY57227.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus CL03T12C18]
Length = 608
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 128/223 (57%), Gaps = 16/223 (7%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
D + LK +FG+ S + Q+E + L D LVL TG GKS+C+Q+PALL
Sbjct: 2 DKSASMRETLKTYFGYDSFRPLQEEIIRHILNKQDALVLMPTGGGKSICYQLPALLCEGT 61
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVI 272
VV+SPLISLM DQ L +G+ A L S + ++ + + G ++Y+ PE
Sbjct: 62 AVVVSPLISLMKDQVEALLANGIAAGALNSSNDETENVQLRRACVEGRLKLLYISPE--- 118
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
+L+ L I+LFAIDE HC+S+WGHDFRP+Y ++ VL + F IP
Sbjct: 119 KLLAEKDYLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFP---------QIP 169
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
++ALTATA REDI++ LH++ F+ +SF RPN+ +VK
Sbjct: 170 IVALTATADKITREDIVRQLHLNHPRIFI-SSFDRPNISLTVK 211
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 97/169 (57%), Gaps = 3/169 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L +F ++++VV ATIAFGMG
Sbjct: 236 IIYCMSRNKTETVAQMLQKQGIRCGVYHAGLSTQHRDETQNDFINDRIQVVCATIAFGMG 295
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D VL+ +L + L +Q
Sbjct: 296 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTVLFYSLGDLILLTKFASESNQQN 355
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
L +Y CR +IL+ YFGE + E C CDVC + PP+
Sbjct: 356 INLEKLQRMQQYA-EADICRRRILLSYFGET-TTEDCGNCDVCKN-PPQ 401
>gi|359434605|ref|ZP_09224868.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20652]
gi|357918814|dbj|GAA61117.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20652]
Length = 607
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 137/220 (62%), Gaps = 17/220 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K ++LK+ FG+S ++ QK + A + D LVL TG GKS+C+QIPAL+ V +VI
Sbjct: 14 KPETVLKQVFGYSEFRDGQKTVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVI 73
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ ++L GV A ++ + + V Q+ +G ++YV PE V++ +
Sbjct: 74 SPLISLMQDQVTQLQALGVKAAYVNNSLAREEQQLVYQQLHQGQIKLLYVAPEKVLQR-E 132
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L+RL+ ++LFAIDE HCVS WGHDFRP Y RL+ L++ F +P+MAL
Sbjct: 133 FLERLSHL-NVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFA---------HVPMMAL 182
Query: 337 TATATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSVK 375
TATA R DI++ L + + ++ T SF RPN+R++++
Sbjct: 183 TATADKATRFDIVEQLKLQQ--PYIHTGSFDRPNIRYTIE 220
Score = 125 bits (314), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 101/176 (57%), Gaps = 17/176 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK IA+ + G+ AAAY+A + Q + V T F + +++VVAT+AFGMG
Sbjct: 242 IIYCTSRKRVDDIAEKIADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMG 301
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPS----- 627
I+K NVR ++HY P+S+E+YYQE GRAGRDG A+ ++Y A++ +
Sbjct: 302 INKPNVRFVLHYDIPKSIESYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQ 361
Query: 628 -RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
RR E+Q A ++ CR +IL+ YF E + E C CD+C++ P
Sbjct: 362 RRRVEEQRFNAMASFAEA-------QTCRRQILLNYFSE-YQREPCGNCDICLNPP 409
>gi|241664540|ref|YP_002982900.1| ATP-dependent DNA helicase RecQ [Ralstonia pickettii 12D]
gi|240866567|gb|ACS64228.1| ATP-dependent DNA helicase RecQ [Ralstonia pickettii 12D]
Length = 636
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 136/228 (59%), Gaps = 23/228 (10%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK- 214
D +++L FG+S+ + Q E ++ DCLVL TG GKSLC+QIPAL+ +
Sbjct: 17 DTAAATHAVLHDVFGYSAFRGPQAEIVAHVADGGDCLVLMPTGGGKSLCYQIPALVRHRR 76
Query: 215 ---VVVVISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCP 268
+V+SPLI+LM DQ + L + GV A +L S G +VE+ G ++YV P
Sbjct: 77 GQGAGIVVSPLIALMQDQVAALEEAGVRAAYLNSALTGAEAAQVERDLAAGRLDLVYVAP 136
Query: 269 ETVIRLIKP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
E RL+ P L+ L SR I LFAIDE HCVS+WGHDFRP+Y +LSVL E F
Sbjct: 137 E---RLMTPRFLELLERSR-IGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP------ 186
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P +ALTATA R++I++ L ++ F L+SF RPN+R+++
Sbjct: 187 ---HVPRIALTATADAVTRDEIVERLALTDARVF-LSSFDRPNIRYTI 230
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 121/243 (49%), Gaps = 37/243 (15%)
Query: 489 SFERTDLLNKPAERLSMLQEPLE-------DGLT----IIYVPTRKETLSIAKYLCGFGV 537
SF+R ++ E+ S Q+ L DG T I+Y +RK+ A++L G+
Sbjct: 220 SFDRPNIRYTIVEKDSARQQLLRFIRAEHMDGDTCDAGIVYCLSRKKVEETAQWLAEQGI 279
Query: 538 KAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAY 596
+A Y+A + SQ+R H F + + V+VATIAFGMGIDK +VR + H P+SLE Y
Sbjct: 280 RALPYHAGM-DSQVRARHQAIFRKEEGVVMVATIAFGMGIDKPDVRFVAHLDLPKSLEGY 338
Query: 597 YQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQ-----------TKQAYRMLSDCF 645
YQE GRAGRDG A+ + L+ ++ RR D+ T + +L C
Sbjct: 339 YQETGRAGRDGLPANAWMAYGLAD---VVQQRRMIDESDADDVHKRVSTAKLEALLGLC- 394
Query: 646 RYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQ 705
+ CR L+ YFGE S + C CD C+ PP+ + EA M + AY Q
Sbjct: 395 ----EAATCRRVALLAYFGE--SSQPCGNCDTCLT-PPQTWDATREAQ--MALSCAYRVQ 445
Query: 706 SNS 708
S
Sbjct: 446 QAS 448
>gi|237723404|ref|ZP_04553885.1| ATP-dependent DNA helicase recQ [Bacteroides sp. 2_2_4]
gi|229447926|gb|EEO53717.1| ATP-dependent DNA helicase recQ [Bacteroides sp. 2_2_4]
Length = 608
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 128/223 (57%), Gaps = 16/223 (7%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
D + LK +FG+ S + Q+E + L D LVL TG GKS+C+Q+PALL
Sbjct: 2 DKSASMRETLKTYFGYDSFRPLQEEIIRHILNKRDALVLMPTGGGKSICYQLPALLCKGT 61
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVI 272
VV+SPLISLM DQ L +G+ A L S + ++ + + G ++Y+ PE
Sbjct: 62 AVVVSPLISLMKDQVEALLANGIAAGALNSSNDETENVQLRRACVEGRLKLLYISPE--- 118
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
+L+ L I+LFAIDE HC+S+WGHDFRP+Y ++ VL + F IP
Sbjct: 119 KLLAEKDYLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFP---------QIP 169
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
++ALTATA REDI++ LH++ F+ +SF RPN+ +VK
Sbjct: 170 IVALTATADKITREDIVRQLHLNHPRIFI-SSFDRPNISLTVK 211
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 95/169 (56%), Gaps = 3/169 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L +F ++++VV ATIAFGMG
Sbjct: 236 IIYCMSRNKTETVAQMLQKQGIRCGVYHAGLSTQHRDETQNDFINDRIQVVCATIAFGMG 295
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG + VL+ +L + L +Q
Sbjct: 296 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSSTVLFYSLGDLILLTKFASESNQQN 355
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
L +Y CR +IL+ YFGE + E C CDVC PP+
Sbjct: 356 INLEKLQRMQQYA-EADICRRRILLSYFGET-TTEDCGNCDVC-KNPPQ 401
>gi|410627347|ref|ZP_11338088.1| ATP-dependent DNA helicase RecQ [Glaciecola mesophila KMM 241]
gi|410153093|dbj|GAC24857.1| ATP-dependent DNA helicase RecQ [Glaciecola mesophila KMM 241]
Length = 602
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 133/232 (57%), Gaps = 19/232 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
S+LK FG+ ++ Q + + L HD LVL TG GKSLC+QIPAL+ + +V+SP
Sbjct: 12 QSVLKTVFGYDEFRDGQHDVIEKILQGHDVLVLMPTGGGKSLCYQIPALVLEGLTIVVSP 71
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGM----YSIIYVCPETVIRLIKP 277
LI+LM DQ L GV+A ++ S ++ RGM Y +IYV PE +++
Sbjct: 72 LIALMKDQVDALVASGVSAAYINSNLSSEEM-HNVYRGMQDGRYKLIYVAPERLMQF-DF 129
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
+QRL S +ALFA+DE HCVS WGHDFR +YRRL L++ F ++P++ LT
Sbjct: 130 IQRL-HSLELALFAVDEAHCVSHWGHDFRKEYRRLGQLKQQFP---------NVPVVGLT 179
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFS--VKHSKTSSRASYKK 387
ATA I R DIL+ L + F SF RPN+R++ K+ T Y K
Sbjct: 180 ATADITTRSDILQQLALQDPFIFK-GSFDRPNIRYNQLFKYKATDQVIQYVK 230
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 97/180 (53%), Gaps = 15/180 (8%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
++G IIY +RK+ ++ L G+ A Y+A L ++ +F ++ ++++VAT+
Sbjct: 232 QEGSGIIYCNSRKKVDDLSIALARQGINCAGYHAGLEGPIRDKIQRDFIQDNIDIIVATV 291
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL----- 625
AFGMGI+K NVR ++H+ P+S+EAYYQE GRAGRDG A+ +L + +
Sbjct: 292 AFGMGINKSNVRFVVHFDLPRSVEAYYQETGRAGRDGMPAEALLLFDEKDAARIRQWIGM 351
Query: 626 ---PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
P R + K A CR ++L+ YF E +H+ C CD+C+D P
Sbjct: 352 GDNPERLDIELQKFAAMEAF------AEAQTCRRQVLLNYFSEYSAHD-CGNCDICLDPP 404
>gi|418465350|ref|ZP_13036287.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359756282|gb|EHK90441.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 629
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 132/214 (61%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ S + Q+E ++A L DCLV+ ATG+GKSLC+QIPAL +V+SPLI
Sbjct: 34 VLHSVFGYQSFRKGQQEIINAVLNGQDCLVIMATGTGKSLCYQIPALCFDGTTLVVSPLI 93
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +GV A +L S Q +V+ +A+ G ++Y+ PE V + +
Sbjct: 94 SLMKDQVDQLRANGVAADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEKV--MTSSFFQ 151
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
++ AIDE HC+S+WGHDFRP+Y +L L+ +F ++P+MALTATA
Sbjct: 152 FISLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGSFP---------NVPIMALTATA 202
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++DIL++L +++ F + SF RPN+R+++
Sbjct: 203 DQTTQQDILQNLRLNR-PHFYVGSFDRPNIRYTL 235
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 143/280 (51%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L + I+Y +R + IA+ LC GV+AAAY+A + +V +
Sbjct: 240 KPMEQLCRFVLAQKGKSGIVYCNSRNKVERIAETLCNKGVRAAAYHAGMENGLREKVQRD 299
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 300 FQRDNIQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYD 359
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + +L P R+ E QA ++ + CR +L+ YFGE
Sbjct: 360 PADYVWLNKMLMEKPETPQRQIEQHKLQAIGEFAE-------SQTCRRLVLLNYFGEH-R 411
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
CQ CD+C+D PP+ N +A +M I Q + G+ QK ++
Sbjct: 412 QMPCQNCDICLD-PPKKYNGLLDAQKIMSAIYR-TGQCYGAHYVIAVLRGMNNQKIREQR 469
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ ++ V I +E S +Y W+ + R + + G +R+
Sbjct: 470 HEQLSVYGIGKEHSTEY-------WQSVLRQLVHLGLVRQ 502
>gi|416062304|ref|ZP_11581397.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|416069431|ref|ZP_11583273.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|347997266|gb|EGY38280.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|348000045|gb|EGY40845.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
Length = 629
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 132/214 (61%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ S + Q+E ++A L DCLV+ ATG+GKSLC+QIPAL +V+SPLI
Sbjct: 34 VLHSVFGYQSFRKGQQEIINAVLNGQDCLVIMATGTGKSLCYQIPALCFDGTTLVVSPLI 93
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +GV A +L S Q +V+ +A+ G ++Y+ PE V + +
Sbjct: 94 SLMKDQVDQLRANGVAADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEKV--MTSSFFQ 151
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
++ AIDE HC+S+WGHDFRP+Y +L L+ +F ++P+MALTATA
Sbjct: 152 FISLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGSFP---------NVPIMALTATA 202
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++DIL++L +++ F + SF RPN+R+++
Sbjct: 203 DQTTQQDILQNLRLNR-PHFYVGSFDRPNIRYTL 235
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 141/280 (50%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L + I+Y +R + IA+ LC GV+AAAY+A + +V +
Sbjct: 240 KPMEQLCRFVLAQKGKSGIVYCNSRNKVERIAETLCNKGVRAAAYHAGMENGLREKVQRD 299
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 300 FQRDNIQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYD 359
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + +L P R+ E QA ++ + CR +L+ YF E
Sbjct: 360 PADYVWLNKMLMEKPETPQRQIEQHKLQAIGEFAE-------SQTCRRLVLLNYFSEH-R 411
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
CQ CD+C+D PP+ N +A +M I Q + G+ QK ++
Sbjct: 412 QTPCQNCDICLD-PPKKYNGLLDAQKIMSAIYR-TGQCYGAHYVIAVLRGMNNQKIREQR 469
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ ++ V I +E +Y W+ + R + + G +R+
Sbjct: 470 HEQLSVYGIGKEHGTEY-------WQSVLRQLVHLGLVRQ 502
>gi|262409277|ref|ZP_06085820.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_22]
gi|262352729|gb|EEZ01826.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_22]
Length = 608
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 128/223 (57%), Gaps = 16/223 (7%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
D + LK +FG+ + + Q+E + L D LVL TG GKS+C+Q+PALL
Sbjct: 2 DKSASMRETLKTYFGYDNFRPLQEEIIRHILNKQDALVLMPTGGGKSICYQLPALLCEGT 61
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVI 272
VV+SPLISLM DQ L +G+ A L S + + + + + G ++Y+ PE
Sbjct: 62 AVVVSPLISLMKDQVEALLANGIAAGALNSSNDETENANLRRACIEGRLKLLYISPE--- 118
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
+L+ L I+LFAIDE HC+S+WGHDFRP+Y ++ VL + F IP
Sbjct: 119 KLLAEKDYLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFP---------QIP 169
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
++ALTATA REDI++ LH++ F+ +SF RPN+ +VK
Sbjct: 170 IVALTATADKITREDIVRQLHLNHPRTFI-SSFDRPNISLTVK 211
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 97/169 (57%), Gaps = 3/169 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L +F ++++VV ATIAFGMG
Sbjct: 236 IIYCMSRSKTETVAQMLQKQGIRCGVYHAGLSTQHRDETQNDFINDRIQVVCATIAFGMG 295
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG ++ VL+ +L + L +Q
Sbjct: 296 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSNTVLFYSLGDLILLTKFASESNQQN 355
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
L +Y CR +IL+ YFGE + E C CDVC + PP+
Sbjct: 356 INLEKLQRMQQYA-EADICRRRILLSYFGET-TTEDCGNCDVCKN-PPQ 401
>gi|178056740|ref|NP_001116556.1| Bloom syndrome protein [Sus scrofa]
gi|168084100|dbj|BAG09489.1| Bloom syndrome protein [Sus scrofa]
Length = 1426
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 670 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSSGVTIVISPLR 729
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 730 SLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLI 789
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L + +A F IDE HCVS+WGHDFRPDY+R+++LR+ F + +P+MA
Sbjct: 790 STLENLYNRKLLARFVIDEAHCVSQWGHDFRPDYKRMNMLRQKFPS---------VPVMA 840
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 841 LTATANPRVQKDILTQLKILRPQVFTM-SFNRHNLKYYV 878
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 96/175 (54%), Gaps = 12/175 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVVATIAFGM 574
IIY +R+E ++A L G+ A AY+A L S V H +++ +V+ ATIAFGM
Sbjct: 904 IIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGM 963
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL----LPSRRS 630
GIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L L +
Sbjct: 964 GIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISQCLLFYTYHDVTRLKRLILMEKDG 1023
Query: 631 EDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGE-DFSHEKCQL-----CDVC 678
TK+ + L Y N + CR L+ YFGE +F+ C+ CD C
Sbjct: 1024 NHHTKETHFNNLYSMVHYCENIAECRRIQLLAYFGENEFNPNFCKKYPDVSCDNC 1078
>gi|270293488|ref|ZP_06199690.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D20]
gi|270274955|gb|EFA20815.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D20]
Length = 603
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 130/216 (60%), Gaps = 20/216 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q++ + + D LVL TG GKS+C+Q+PALL+ VV+SPLIS
Sbjct: 5 LKTYFGYDSFRPLQEDIIRHLMDRKDALVLMPTGGGKSICYQLPALLSEGTAVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVIRLIKPLQ 279
LM DQ L +G+ A L S +++ E +LR G ++Y+ PE +L+
Sbjct: 65 LMKDQVETLCANGIAAGALNSN--NDETENASLRRACMEGKLKLLYISPE---KLLAEAN 119
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L I+LFAIDE HC+S+WGHDFRP+Y ++ +L + F +P++ALTAT
Sbjct: 120 YLLRDIHISLFAIDEAHCISQWGHDFRPEYTQMGILHQLFP---------QVPIIALTAT 170
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A REDI+K LH+++ F+ +SF RPNL +VK
Sbjct: 171 ADKITREDIIKQLHLNQPRIFI-SSFDRPNLSLTVK 205
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 112/180 (62%), Gaps = 9/180 (5%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566
+ P E G IIY +R +T S+A+ L G+++A Y+A L ++ +F ++++ V
Sbjct: 223 RHPGESG--IIYCMSRSKTESVAQMLQKHGIRSAVYHAGLSPARRDEAQDDFINDRVQAV 280
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLP 626
ATIAFGMGIDK NVR +IHY P+S+E++YQE GRAGRDG +D +L+ +L+ + +L
Sbjct: 281 CATIAFGMGIDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTLLFYSLADL--ILL 338
Query: 627 SRRSEDQTKQAYRM--LSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
++ + D +Q+ + L +Y CR +IL+ YFGE+ + + C CDVC PPE
Sbjct: 339 TKFATDSGQQSINLEKLQRMQQYA-EADICRRRILLSYFGENTTCD-CGNCDVC-KNPPE 395
>gi|145637733|ref|ZP_01793385.1| organic solvent tolerance protein [Haemophilus influenzae PittHH]
gi|145269082|gb|EDK09033.1| organic solvent tolerance protein [Haemophilus influenzae PittHH]
Length = 619
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK FG+ S + Q+E ++A L D LV+ ATG+GKSLC+QIPAL + +VISPL
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINATLNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A FL S Q +V+ K + G ++YV PE V +
Sbjct: 78 ISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKV--MTNSFF 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L + AIDE HC+S+WGHDFRP+Y +L L+ +F D P+MALTAT
Sbjct: 136 QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFP---------DAPIMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A ++DIL+ L++ K++ SF RPN+R++++
Sbjct: 187 ADYATQQDILRHLNLKNLHKYI-GSFDRPNIRYTLE 221
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 146/280 (52%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + IIY +R + IA+ L GV AAAY+A + + RV +
Sbjct: 225 KPMEQLTRFVLAQKGKSGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQD 284
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 285 FQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 344
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + + +L P R+ E +A ++ + CR +L+ YFGE +
Sbjct: 345 PADYTWLQKILFEKPETPQRQIEQHKLEAIGEFAE-------SQTCRRLVLLNYFGE-YR 396
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
C CD+C+D P + L + ++ + Q + G+ QK ++R
Sbjct: 397 QTPCNNCDICLDPPKKYDGLVDAQKVMSTIYRV--GQCFGAHYVIAVLRGMHNQKIVERQ 454
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ K+ V I +++S+++ W+ + R + + G++++
Sbjct: 455 HDKLSVYGIGKDKSKEH-------WQSVIRQLIHLGFVQQ 487
>gi|393788520|ref|ZP_10376647.1| ATP-dependent DNA helicase RecQ [Bacteroides nordii CL02T12C05]
gi|392654200|gb|EIY47848.1| ATP-dependent DNA helicase RecQ [Bacteroides nordii CL02T12C05]
Length = 601
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 131/233 (56%), Gaps = 18/233 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + L D LVL TG GKS+C+Q+PALL +V+SPLIS
Sbjct: 5 LKTYFGYESFRPLQEEIIRNLLNRKDSLVLMPTGGGKSICYQLPALLCEGTAIVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + + + G ++Y+ PE +LI + L
Sbjct: 65 LMKDQVEALRANGIAAGALNSSNDETENANLRRACIEGKIKLLYISPE---KLITEVDYL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
++LFAIDE HC+S+WGHDFRP+Y ++ +L + F +P++ALTATA
Sbjct: 122 LRDMNLSLFAIDEAHCISQWGHDFRPEYAQMGILHQMFPK---------VPIIALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLID 394
R DI++ LH++ K ++SF RPNL +VK S K + ID
Sbjct: 173 KITRGDIIRQLHLTD-PKIFISSFDRPNLSLTVKRGYQQKEKS--KAILEFID 222
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 97/169 (57%), Gaps = 3/169 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L Q +F ++++VV ATIAFGMG
Sbjct: 230 IIYCMSRSKTETVAQMLQKHGIRCGVYHAGLSAYQRDNTQDDFINDRIQVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D VL+ +L + L Q
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTVLFYSLGDLILLTKFATESKQQT 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
L +Y CR +IL+ YFGE S E C CDVC + PPE
Sbjct: 350 INLEKLQRMQQYA-EADICRRRILLSYFGEK-SEEDCGNCDVCRN-PPE 395
>gi|417843805|ref|ZP_12489870.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21127]
gi|341948268|gb|EGT74898.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21127]
Length = 619
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 131/216 (60%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK FG+ S + Q+E ++A L D LV+ ATG+GKSLC+QIPAL + +VISPL
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFAGLTLVISPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A FL S Q +V+ K + G ++YV PE V +
Sbjct: 78 ISLMKDQVDQLQANGIDADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKV--MTNSFF 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L ++ AIDE HC+S+WGHDFRP+Y +L L+ +F P+MALTAT
Sbjct: 136 QLISYSKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFP---------HAPIMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A R+DIL L++ K++ SF RPN+R++++
Sbjct: 187 ADYATRQDILTHLNLENPHKYI-GSFDRPNIRYTLE 221
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 144/280 (51%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + IIY +R + IA+ L GV AAAY+A + + RV +
Sbjct: 225 KPMEQLTRFVLAQKGKSGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETALRERVQQD 284
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ +S+E+YYQE GRAGRD A+ VL+
Sbjct: 285 FQRDNVQVVVATIAFGMGINKSNVRFVAHFDLSRSIESYYQETGRAGRDDLPAEAVLFYE 344
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + + +L P R+ E +A ++ + CR +L+ YFGE
Sbjct: 345 PADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAE-------SQTCRRLVLLNYFGEH-R 396
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
C CD+C+D P + L + ++ + Q + G+ QK ++R
Sbjct: 397 QTPCNNCDICLDPPKKYDGLVDAQKVMSTIYRV--GQCYGAHYVIAVLRGMHNQKIIERQ 454
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ K+ V I +++S+++ W+ + R + + G++++
Sbjct: 455 HDKLSVYGIGKDKSKEH-------WQSVIRQLIHLGFVQQ 487
>gi|260775110|ref|ZP_05884009.1| ATP-dependent DNA helicase RecQ [Vibrio coralliilyticus ATCC
BAA-450]
gi|260609027|gb|EEX35187.1| ATP-dependent DNA helicase RecQ [Vibrio coralliilyticus ATCC
BAA-450]
Length = 611
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 148/261 (56%), Gaps = 20/261 (7%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
SD S+L+ FG+ S ++ Q+E + A + D LV+ TG GKSLC+Q+PAL+ G
Sbjct: 10 SDPSPTPQSILEDVFGYQSFRDGQQEVIEAAVNGQDSLVIMPTGGGKSLCYQVPALVRGG 69
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETV 271
+ +VISPLISLM DQ +L +GV+A + S P ++ V + G ++YV PE V
Sbjct: 70 LTLVISPLISLMKDQVDQLKANGVSAECVNSSMPRDELISVYNRMQSGQLKLVYVSPERV 129
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
L++ ES +++ A+DE HC+S+WGHDFRP+Y L ++++F +
Sbjct: 130 --LMRDFIERLESLSLSMIAVDEAHCISQWGHDFRPEYASLGQIKQHFP---------HV 178
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---K 386
P MALTATA R DI+ L +++ L+SF RPN+R+++ KH S + +
Sbjct: 179 PFMALTATADDATRNDIMHRLQLNE-PHIHLSSFDRPNIRYTLVEKHKPISQVIRFLDTQ 237
Query: 387 KDFCQLIDIYTKKKKTGEKEK 407
K C +I ++KK EK
Sbjct: 238 KGNCGIIYCGSRKKVEMVTEK 258
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 148/287 (51%), Gaps = 21/287 (7%)
Query: 489 SFERTDLL------NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ +KP ++ + + IIY +RK+ + + LC ++AA+Y
Sbjct: 210 SFDRPNIRYTLVEKHKPISQVIRFLDTQKGNCGIIYCGSRKKVEMVTEKLCNNHIRAASY 269
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L + V F + +++VVAT+AFGMGI+K NVR ++H+ P+++E+YYQE GR
Sbjct: 270 HAGLEADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGR 329
Query: 603 AGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A+ ++ A++S + +L + Q + L+ + CR ++L
Sbjct: 330 AGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVEAHKLNAMSAFA-EAQTCRRQVL 388
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGI 719
+ YFGE + + C CD+C+D PP+ + E+A + + N QS M + G+
Sbjct: 389 LNYFGE-YREQPCGNCDICLD-PPKHFDATEQARKALSCVYRVN-QSFGMGYVVEVLRGM 445
Query: 720 KKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYI 765
+ + + + K+ I RE S Y W + R + +KG +
Sbjct: 446 QNIRIRENGHDKLTTYGIGRENSHDY-------WVSIFRQLIHKGML 485
>gi|378696929|ref|YP_005178887.1| ATP-dependent DNA helicase [Haemophilus influenzae 10810]
gi|301169448|emb|CBW29048.1| ATP-dependent DNA helicase [Haemophilus influenzae 10810]
Length = 619
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK FG+ S + Q+E ++A L D LV+ ATG+GKSLC+QIPAL + +VISPL
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A FL S Q +V+ K + G ++YV PE V +
Sbjct: 78 ISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKV--MTNSFF 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L + AIDE HC+S+WGHDFRP+Y +L L+ +F D P+MALTAT
Sbjct: 136 QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFP---------DAPIMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A ++DIL+ L++ K++ SF RPN+R++++
Sbjct: 187 ADYATQQDILRHLNLKNLHKYI-GSFDRPNIRYTLE 221
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 145/280 (51%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + IIY +R + IA+ L GV AAAY+A + + RV +
Sbjct: 225 KPMEQLTRFVLAQKGKSGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQD 284
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 285 FQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 344
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + + +L P R+ E +A ++ + CR +L+ YFGE
Sbjct: 345 PADYAWLQKILFEKPETPQRQIEQHKLEAIGEFAE-------SQTCRRLVLLNYFGEH-R 396
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
C CD+C+D P + L + ++ + Q + G+ QK ++R
Sbjct: 397 QTPCNNCDICLDPPKKYDGLVDAQKVMSTIYRV--GQCFGAHYVIAVLRGMHNQKIVERQ 454
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ K+ V I +++S+++ W+ + R + + G++++
Sbjct: 455 HHKLSVYGIGKDKSKEH-------WQSVIRQLIHLGFVQQ 487
>gi|407040860|gb|EKE40365.1| recQ family DNA helicase [Entamoeba nuttalli P19]
Length = 508
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 136/226 (60%), Gaps = 19/226 (8%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
+E +++ L K F S + Q+E + + L H D LV+ TG GKSLCFQ+ +LT ++
Sbjct: 20 YEQRIDDTLHKCFNIQSFRPQQREIILSTLQHKDTLVIMPTGGGKSLCFQLQPVLTERIT 79
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS------IIYVCPET 270
+VISPLI+LM +Q L+K G+T+ L S ++ K L + S ++YV PE
Sbjct: 80 IVISPLIALMQNQVDGLNKRGITSFILNSTLSKSEA-TKVLSILNSSNPELYLLYVTPEQ 138
Query: 271 V--IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
+ R +++L + + +FA+DE HC+S+WGHDFRP Y LS L++ +
Sbjct: 139 IKTQRFQNIMKKLYSVKKLGMFAVDEAHCISQWGHDFRPSYLELSYLKKTYP-------- 190
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
DIP++ALTATAT +V+EDI+KSL + K + +SF RPN+ F V
Sbjct: 191 -DIPIIALTATATSKVKEDIIKSLEL-KNPQIFTSSFDRPNIYFKV 234
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 94/185 (50%), Gaps = 10/185 (5%)
Query: 494 DLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR 553
DL P + L+ + E IIY TR E I KY+ G A Y+A + +
Sbjct: 238 DLYETPIQILTQILHQHEKEGGIIYCSTRMECELIEKYISTNGYPVAKYHAGMKSEERET 297
Query: 554 VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV 613
+ ++ ++ VVVATIAFGMGID+ +VR +IH+ P+++E + QEAGRAGRDG A+ +
Sbjct: 298 IQKKWESGEVNVVVATIAFGMGIDRGDVRFVIHWNIPKTIEGFMQEAGRAGRDGKPAESI 357
Query: 614 LYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
+L S ++ + S+ R CR K L++YFGE +
Sbjct: 358 ----------ILFSNDDFEREVALNQETSEIIRELCVECSCRRKCLLKYFGETTFKPNKR 407
Query: 674 LCDVC 678
CD+C
Sbjct: 408 CCDLC 412
>gi|410637731|ref|ZP_11348302.1| ATP-dependent DNA helicase RecQ [Glaciecola lipolytica E3]
gi|410142699|dbj|GAC15507.1| ATP-dependent DNA helicase RecQ [Glaciecola lipolytica E3]
Length = 609
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 135/219 (61%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K +LK+ FG+S ++ Q++ + L+ D LVL TG GKSLC+QIPAL+ + +V+
Sbjct: 17 KPAEVLKEVFGYSHFRDGQQQVIEQVLSQRDALVLMPTGGGKSLCYQIPALILPGITIVV 76
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ L+ GV A F+ S P + + ++ G + ++YV PE +++L +
Sbjct: 77 SPLISLMKDQVDALTASGVAATFINSSIPREQLLNIYRQLQDGKFKLLYVAPERLMQL-E 135
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
+ RL + ++L A+DE HCVS WGHDFR DYR L L+ +F +IP+M L
Sbjct: 136 FIDRL-HTLNLSLIAVDEAHCVSHWGHDFRQDYRLLGQLKTHFP---------NIPVMGL 185
Query: 337 TATATIQVREDILKSLHMSKGTKFVL-TSFFRPNLRFSV 374
TATA I R DI + L++ T +V +SF RPN+R+++
Sbjct: 186 TATADIATRADITQQLNLQ--TPYVFRSSFDRPNIRYNL 222
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 11/178 (6%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
++G I+Y +R + ++ L G+ +A Y+A L ++ +F ++ ++V+VAT+
Sbjct: 239 QEGSGIVYCNSRAKVDELSFKLAKQGINSAGYHAGLEPEIREKIQRDFIQDNVDVIVATV 298
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY------ANLSSMPTL 624
AFGMGI+K NVR ++H+ P+S+E+YYQE GRAGRDG A+ +L A + +
Sbjct: 299 AFGMGINKSNVRYVVHFDLPRSIESYYQETGRAGRDGMPAEALLLYDEKDAARIRQWIAM 358
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
+ D Q + + + F + CR ++L+ YF E +S C CD+CV+ P
Sbjct: 359 GENTERHDVELQKFAAM-EAF---ADAQTCRRQVLLNYFSE-YSGAHCGNCDICVNPP 411
>gi|387120628|ref|YP_006286511.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429733941|ref|ZP_19267991.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans Y4]
gi|385875120|gb|AFI86679.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429153932|gb|EKX96695.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans Y4]
Length = 629
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 132/214 (61%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ S + Q+E ++A L DCLV+ ATG+GKSLC+QIPAL +V+SPLI
Sbjct: 34 VLHSVFGYQSFRKGQQEIINAVLNGQDCLVIMATGTGKSLCYQIPALCFDGTTLVVSPLI 93
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +GV A +L S Q +V+ +A+ G ++Y+ PE V + +
Sbjct: 94 SLMKDQVDQLRANGVAADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEKV--MTSSFFQ 151
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
++ AIDE HC+S+WGHDFRP+Y +L L+ +F ++P+MALTATA
Sbjct: 152 FISLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGSFP---------NVPIMALTATA 202
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++DIL++L +++ F + SF RPN+R+++
Sbjct: 203 DQTTQQDILQNLRLNR-PHFYVGSFDRPNIRYTL 235
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 141/280 (50%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L + I+Y +R + IA+ L GV+AAAY+A + +V +
Sbjct: 240 KPMEQLCRFVLAQKGKSGIVYCNSRNKVERIAETLYNKGVRAAAYHAGMENGLREKVQRD 299
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 300 FQRDNIQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYD 359
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + +L P R+ E QA ++ + CR +L+ YFGE
Sbjct: 360 PADYVWLNKMLMEKPETPQRQIEQHKLQAIGEFAE-------SQTCRRLVLLNYFGEH-R 411
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
CQ CD+C+D PP+ N +A +M I Q + G+ QK D+
Sbjct: 412 QTPCQNCDICLD-PPKKYNGLLDAQKIMSAIYR-TGQCYGAHYVIAVLRGMNNQKIRDQH 469
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ ++ V I +E +Y W+ + R + + G +R+
Sbjct: 470 HDQLSVYGIGKEHGTEY-------WQSVLRQLVHLGLVRQ 502
>gi|67475629|ref|XP_653505.1| recQ family DNA helicase [Entamoeba histolytica HM-1:IMSS]
gi|56470462|gb|EAL48119.1| recQ family DNA helicase [Entamoeba histolytica HM-1:IMSS]
gi|449702365|gb|EMD43019.1| ATP-dependent DNA helicase recQ, putative [Entamoeba histolytica
KU27]
Length = 509
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 136/226 (60%), Gaps = 19/226 (8%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
+E +++ L K F S + Q+E + + L H D LV+ TG GKSLCFQ+ +LT ++
Sbjct: 20 YEQRIDETLHKCFNIQSFRPQQREIILSTLQHKDTLVIMPTGGGKSLCFQLQPVLTERIT 79
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS------IIYVCPET 270
+VISPLI+LM +Q L+K G+T+ L S ++ K L + S ++YV PE
Sbjct: 80 IVISPLIALMQNQVDGLNKRGITSFILNSTLSKSEA-TKVLSILNSSNPELYLLYVTPEQ 138
Query: 271 V--IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
+ R +++L + + +FA+DE HC+S+WGHDFRP Y LS L++ +
Sbjct: 139 IKTQRFQNIMKKLYSIKKLGMFAVDEAHCISQWGHDFRPSYLELSYLKKTYP-------- 190
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
DIP++ALTATAT +V+EDI+KSL + K + +SF RPN+ F V
Sbjct: 191 -DIPIIALTATATSKVKEDIIKSLEL-KNPQIFTSSFDRPNIYFKV 234
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 94/185 (50%), Gaps = 10/185 (5%)
Query: 494 DLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR 553
DL P + L+ + E IIY TR E I KY+ G A Y+A + +
Sbjct: 238 DLYETPIQILTQILHQHEKEGGIIYCSTRMECELIEKYISTNGYPVAKYHAGMKSEERET 297
Query: 554 VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV 613
+ ++ ++ VVVATIAFGMGID+ +VR +IH+ P+++E + QEAGRAGRDG A+ +
Sbjct: 298 IQKKWESGEVNVVVATIAFGMGIDRGDVRFVIHWNIPKTIEGFMQEAGRAGRDGKPAESI 357
Query: 614 LYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
+L S ++ + S+ R CR K L++YFGE +
Sbjct: 358 ----------ILFSNDDFEREVALNQETSEIIRELCVECSCRRKCLLKYFGETTFKPNKR 407
Query: 674 LCDVC 678
CD+C
Sbjct: 408 CCDLC 412
>gi|296221953|ref|XP_002756974.1| PREDICTED: Werner syndrome ATP-dependent helicase [Callithrix
jacchus]
Length = 1433
Score = 166 bits (419), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 124/211 (58%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D + + ATG GKSLCFQ P + GK+ +VISPLI
Sbjct: 539 LKTYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLI 598
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q +N + L G Y I+Y+ PE + LQ+L
Sbjct: 599 SLMEDQVLQLRMSNIPACFLGSAQSENVLRDVKL-GKYQIVYITPEYCSGNLSLLQQLEA 657
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ GI L A+DE HC+S+WGHDFR +R L L+ +P++A+TATA+
Sbjct: 658 NIGITLIAVDEAHCISEWGHDFRNSFRELGSLKTALPL---------VPIVAVTATASSS 708
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+R+DI+ L++ K + T F RPNL V
Sbjct: 709 IRKDIVCCLNL-KNPQITCTGFDRPNLYLEV 738
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 103/180 (57%), Gaps = 17/180 (9%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + S+ H F ++++ V+ATIA
Sbjct: 764 EGPTIIYCPSRKMTEQVTDELRKLKLSCGTYHAGMSFSKRTDTHHRFMRDEIQCVIATIA 823
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYA----NLSSMPTLLP 626
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+A NL+ + LL
Sbjct: 824 FGMGINKADIRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRL--LLT 881
Query: 627 SRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
E +M+S +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 882 EIHDEMFRLYKLKMMSKMEKY-LHSSRCRRRIILSHF-EDKQVQKASLGIMGTEKCCDNC 939
>gi|388455906|ref|ZP_10138201.1| ATP-dependent DNA helicase RecQ [Fluoribacter dumoffii Tex-KL]
Length = 607
Score = 166 bits (419), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 134/225 (59%), Gaps = 20/225 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++LK++FG S + Q++ ++ + D LVL TG GKSLC+QIPA++ +V+SPL
Sbjct: 16 AVLKEYFGFDSFRTPQEDIINEVIEGKDVLVLMPTGGGKSLCYQIPAIVRPGTGIVVSPL 75
Query: 223 ISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKP-- 277
I+LM DQ + L G+ A + SG+ KV + ++Y+ PE RL+ P
Sbjct: 76 IALMEDQVTALRLQGIRAAYYNSSLSGEESKKVLMQLHHNELDLLYIAPE---RLMSPSF 132
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L+RL E IALFAIDE HC+S+WGHDFRP+Y L VL+ +F +IP++ALT
Sbjct: 133 LERLKECH-IALFAIDEAHCISQWGHDFRPEYAALGVLKTHFP---------NIPIIALT 182
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
ATA Q R+DI+ LH + + + SF RPN+ + V H + +
Sbjct: 183 ATADKQTRQDIIDKLHYT--PRKYIASFNRPNIHYKVVHKTNAVK 225
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 109/195 (55%), Gaps = 8/195 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY TR ++A+ L KA AY+A LP + R V F +++++VVATIAFGMG
Sbjct: 240 IIYCSTRTAVETLAQKLQEMDFKARAYHAGLPHKERREVQGLFRHDRIDIVVATIAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
IDK NVR ++HY P+++E YYQE GRAGRDG A +L A+ + + + + + ++
Sbjct: 300 IDKSNVRFVVHYDLPKNIEGYYQETGRAGRDGLPAQALLLYDAADSARLRSWIHNNPLDE 359
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
Q + L+ + S CR +IL+ YF E E CQ CDVC D PP + E+A
Sbjct: 360 QRRVEINKLNHMLAFA-EASHCRRQILLRYFDEPCDTE-CQYCDVC-DNPPITADATEDA 416
Query: 693 NILMQVIAAYNEQSN 707
+ I Y Q N
Sbjct: 417 QKFLSCI--YRLQQN 429
>gi|167540323|ref|XP_001741831.1| ATP-dependent DNA helicase recQ [Entamoeba dispar SAW760]
gi|165893416|gb|EDR21673.1| ATP-dependent DNA helicase recQ, putative [Entamoeba dispar SAW760]
Length = 508
Score = 166 bits (419), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 136/226 (60%), Gaps = 19/226 (8%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
+E +++ L K F S + Q+E + + L H D +V+ TG GKSLCFQ+ +LT ++
Sbjct: 20 YEQRIDETLHKCFNIQSFRPQQREIILSTLQHKDTVVIMPTGGGKSLCFQLQPVLTERIT 79
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS------IIYVCPET 270
+VISPLI+LM +Q L+K G+T+ L S ++ K L + S ++YV PE
Sbjct: 80 IVISPLIALMQNQVDGLNKRGITSFILNSTLSKSEA-TKVLSLLNSSNPELYLLYVTPEQ 138
Query: 271 V--IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
+ R +++L + + +FA+DE HC+S+WGHDFRP Y LS L++ +
Sbjct: 139 IKTQRFQNIMKKLYSIKKLGMFAVDEAHCISQWGHDFRPSYLELSYLKKTYP-------- 190
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
DIP++ALTATAT +V+EDI+KSL + K K +SF RPN+ F V
Sbjct: 191 -DIPIIALTATATPKVKEDIIKSLEL-KNPKIFTSSFDRPNIYFKV 234
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 94/185 (50%), Gaps = 10/185 (5%)
Query: 494 DLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR 553
DL P + L+ + E IIY TR E I KY+ G A Y+A + +
Sbjct: 238 DLYETPIQILTQILHQHEKEGGIIYCSTRMECELIEKYISTNGYPVAKYHAGMKSEERET 297
Query: 554 VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV 613
+ ++ ++ VVVATIAFGMGID+ +VR +IH+ P+++E + QEAGRAGRDG A+ +
Sbjct: 298 IQKKWENGEVNVVVATIAFGMGIDRGDVRFVIHWNIPKTIEGFMQEAGRAGRDGKPAESI 357
Query: 614 LYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
+L S ++ + S+ R CR K L++YFGE +
Sbjct: 358 ----------ILFSNDDFEREVALNQETSEVIRELCVECSCRRKCLLKYFGETSFKPNKR 407
Query: 674 LCDVC 678
CD+C
Sbjct: 408 CCDLC 412
>gi|16272669|ref|NP_438887.1| ATP-dependent DNA helicase [Haemophilus influenzae Rd KW20]
gi|260579821|ref|ZP_05847651.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae RdAW]
gi|2500112|sp|P71359.1|RECQ_HAEIN RecName: Full=ATP-dependent DNA helicase RecQ
gi|1573732|gb|AAC22387.1| ATP-dependent DNA helicase (recQ) [Haemophilus influenzae Rd KW20]
gi|260093105|gb|EEW77038.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae RdAW]
Length = 619
Score = 166 bits (419), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK FG+ S + Q+E ++A L D LV+ ATG+GKSLC+QIPAL + +VISPL
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A FL S Q +V+ K + G ++YV PE V +
Sbjct: 78 ISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKV--MTNSFF 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L + AIDE HC+S+WGHDFRP+Y +L L+ +F D P+MALTAT
Sbjct: 136 QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFP---------DAPIMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A ++DIL+ L++ K++ SF RPN+R++++
Sbjct: 187 ADYATQQDILRHLNLKNLHKYI-GSFDRPNIRYTLE 221
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 145/280 (51%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + IIY +R + IA+ L GV AAAY+A + + RV +
Sbjct: 225 KPMEQLTRFVLAQKGKSGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQD 284
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 285 FQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 344
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + + +L P R+ E +A ++ + CR +L+ YFGE
Sbjct: 345 PADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAE-------SQTCRRLVLLNYFGEH-R 396
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
C CD+C+D P + L + ++ + Q + G+ QK ++R
Sbjct: 397 QTPCNNCDICLDPPKKYDGLVDAQKVMSTIYRV--GQCFGAHYVIAVLRGMHNQKIIERQ 454
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ K+ V I +++S+++ W+ + R + + G++++
Sbjct: 455 HHKLSVYGIGKDKSKEH-------WQSVIRQLIHLGFVQQ 487
>gi|390989269|ref|ZP_10259568.1| ATP-dependent DNA helicase RecQ [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|372556027|emb|CCF66543.1| ATP-dependent DNA helicase RecQ [Xanthomonas axonopodis pv. punicae
str. LMG 859]
Length = 598
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 128/216 (59%), Gaps = 15/216 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ LL + FG+ + Q+ + A +D LVL TG GKSLC+Q+PALL + +V+SP
Sbjct: 6 HELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIGIVVSP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ L + GV A FL S + +VE+ L G ++YV PE + L +
Sbjct: 66 LIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERL--LTQRF 123
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + +P MALTA
Sbjct: 124 LSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HVPRMALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA + +I + L + FV +SF RPN+R++V
Sbjct: 175 TADPPTQREIAERLDLVDARHFV-SSFDRPNIRYTV 209
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A+ LC G A Y+A LP F ++ ATIAFGMG
Sbjct: 232 IVYAMSRRKVEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+SLE YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 292 IDKPDVRFVAHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDVVLLKQMIEQGEAAE 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ K+ R D + CR ++L+ FGE + + C CD C+
Sbjct: 352 ERKRLERAKLDHLLGYCESMQCRRQVLLAGFGETYP-KPCGNCDNCL 397
>gi|319942147|ref|ZP_08016465.1| ATP-dependent DNA helicase RecQ [Sutterella wadsworthensis 3_1_45B]
gi|319804357|gb|EFW01241.1| ATP-dependent DNA helicase RecQ [Sutterella wadsworthensis 3_1_45B]
Length = 609
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 134/217 (61%), Gaps = 16/217 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK+ FG+ + + FQ+E + A + D LVL TG GKSLC+QIPALL V VV+SPLI+
Sbjct: 11 LKQVFGYDAFRGFQEEVVRAVVRGEDVLVLMPTGGGKSLCYQIPALLRDGVAVVVSPLIA 70
Query: 225 LMHDQCSKLSKHGVTACFLGSG-QPDNKVE-QKALR-GMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L + GV+A +L S P+ + ++ LR G ++YV PE + L+ +Q L
Sbjct: 71 LMQDQVDALEELGVSAAYLNSTLTPEAAADVRRRLRCGELDLLYVAPERL--LMSSMQAL 128
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
I+LFAIDE HCVS WGHDFRP+Y LS+LRE+F ++P +ALTATA
Sbjct: 129 LSEVKISLFAIDEAHCVSIWGHDFRPEYGALSILREHFP---------NVPRIALTATAD 179
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
+ RE+I+ L + +FV SF RPN+ + + K
Sbjct: 180 PKTREEIVNKL-LVHPKEFV-ASFDRPNIFYRIVDKK 214
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 102/196 (52%), Gaps = 8/196 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
++Y R+ SI +YLC G+ A Y+A L + F V+VATIAFGMG
Sbjct: 234 VVYCIARQTCESICEYLCSKGIHALFYHAGLSNEERAERLAAFQREDDIVMVATIAFGMG 293
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSED 632
IDK NVR + H P+S+E Y+QE GRAGRDG +D + A++ + + ++D
Sbjct: 294 IDKPNVRFVAHADMPKSIEGYFQETGRAGRDGLPSDAWMAYGLADVVNQRYFIDKSGADD 353
Query: 633 QTKQAYRMLSDCFRYGMNTSC-CRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEE 691
KQ D G+ +C CR L+ YFGE + C CD CVD PP+M +
Sbjct: 354 LHKQIETEKLDAM-LGLAEACTCRRVQLLAYFGEKST--PCGNCDNCVD-PPQMMDATIA 409
Query: 692 ANILMQVIAAYNEQSN 707
A +++ I ++SN
Sbjct: 410 AKMIISCIWRIQQKSN 425
>gi|336406152|ref|ZP_08586813.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 1_1_30]
gi|423216120|ref|ZP_17202645.1| ATP-dependent DNA helicase RecQ [Bacteroides xylanisolvens
CL03T12C04]
gi|295085102|emb|CBK66625.1| ATP-dependent DNA helicase, RecQ-like [Bacteroides xylanisolvens
XB1A]
gi|335935401|gb|EGM97353.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 1_1_30]
gi|392690971|gb|EIY84222.1| ATP-dependent DNA helicase RecQ [Bacteroides xylanisolvens
CL03T12C04]
Length = 602
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 126/214 (58%), Gaps = 16/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ + + Q+E + L D LVL TG GKS+C+Q+PALL VV+SPLIS
Sbjct: 5 LKTYFGYDNFRPLQEEIIRHILNKQDALVLMPTGGGKSICYQLPALLCEGTAVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + + + G ++Y+ PE +L+ L
Sbjct: 65 LMKDQVEALLANGIAAGALNSSNDETENANLRRACIEGRLKLLYISPE---KLLAEKDYL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
I+LFAIDE HC+S+WGHDFRP+Y ++ VL + F IP++ALTATA
Sbjct: 122 LRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFP---------QIPIVALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
REDI++ LH++ F+ +SF RPN+ +VK
Sbjct: 173 KITREDIVRQLHLNHPRTFI-SSFDRPNISLTVK 205
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 97/169 (57%), Gaps = 3/169 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L +F ++++VV ATIAFGMG
Sbjct: 230 IIYCMSRSKTETVAQMLQKQGIRCGVYHAGLSTQHRDETQNDFINDRIQVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG ++ VL+ +L + L +Q
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSNTVLFYSLGDLILLTKFASESNQQN 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
L +Y CR +IL+ YFGE + E C CDVC + PP+
Sbjct: 350 INLEKLQRMQQYA-EADICRRRILLSYFGET-TTEDCGNCDVCKN-PPQ 395
>gi|319775328|ref|YP_004137816.1| ATP-dependent DNA helicase [Haemophilus influenzae F3047]
gi|319897768|ref|YP_004135965.1| ATP-dependent DNA helicase [Haemophilus influenzae F3031]
gi|329122676|ref|ZP_08251254.1| ATP-dependent helicase RecQ [Haemophilus aegyptius ATCC 11116]
gi|317433274|emb|CBY81649.1| ATP-dependent DNA helicase [Haemophilus influenzae F3031]
gi|317449919|emb|CBY86131.1| ATP-dependent DNA helicase [Haemophilus influenzae F3047]
gi|327472550|gb|EGF17980.1| ATP-dependent helicase RecQ [Haemophilus aegyptius ATCC 11116]
Length = 619
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK FG+ S + Q+E ++A L D LV+ ATG+GKSLC+QIPAL + +VISPL
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A FL S Q +V+ K + G ++YV PE V +
Sbjct: 78 ISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKV--MTNSFF 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L + AIDE HC+S+WGHDFRP+Y +L L+ +F D P+MALTAT
Sbjct: 136 QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFP---------DAPIMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A ++DIL+ L++ K++ SF RPN+R++++
Sbjct: 187 ADYATQQDILRHLNLKNLHKYI-GSFDRPNIRYTLE 221
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 145/280 (51%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + IIY +R + IA+ L GV AAAY+A + + RV +
Sbjct: 225 KPMEQLTRFVLAQKGKSGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQD 284
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 285 FQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 344
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + + +L P R+ E +A ++ + CR +L+ YFGE
Sbjct: 345 PADYAWLQKILFEKPETPQRQIEQHKLEAIGEFAE-------SQTCRRLVLLNYFGEH-R 396
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
C CD+C+D P + L + ++ + Q + G+ QK ++R
Sbjct: 397 QTPCNNCDICLDPPKKYDGLVDAQKVMSTIYRV--GQCFGAHYVIAMLRGMHNQKIIERQ 454
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ K+ V I +++S+++ W+ + R + + G++++
Sbjct: 455 HHKLSVYGIGKDKSKEH-------WQSVIRQLIHLGFVQQ 487
>gi|229845776|ref|ZP_04465888.1| frataxin-like protein [Haemophilus influenzae 7P49H1]
gi|229810780|gb|EEP46497.1| frataxin-like protein [Haemophilus influenzae 7P49H1]
Length = 619
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK FG+ S + Q+E ++A L D LV+ ATG+GKSLC+QIPAL + +VISPL
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINATLNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A FL S Q +V+ K + G ++YV PE V +
Sbjct: 78 ISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKV--MTNSFF 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L + AIDE HC+S+WGHDFRP+Y +L L+ +F D P+MALTAT
Sbjct: 136 QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFP---------DAPIMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A ++DIL+ L++ K++ SF RPN+R++++
Sbjct: 187 ADYATQQDILRHLNLKNLHKYI-GSFDRPNIRYTLE 221
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 145/280 (51%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + IIY +R + IA+ L GV AAAY+A + + RV +
Sbjct: 225 KPMEQLTRFVLAQKGKSGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQD 284
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 285 FQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 344
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + + +L P R+ E +A ++ + CR +L+ YFGE
Sbjct: 345 PADYAWLQKILFEKPETPQRQIEQHKLEAIGEFAE-------SQTCRRLVLLNYFGEH-R 396
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
C CD+C+D P + L + ++ + Q + G+ QK ++R
Sbjct: 397 QTPCNNCDICLDPPKKYDGLVDAQKVMSTIYRV--GQCFGAHYVISVLRGMHNQKIIERQ 454
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ K+ V I +++S+++ W+ + R + + G++++
Sbjct: 455 HHKLSVYGIGKDKSKEH-------WQSVIRQLIHLGFVQQ 487
>gi|426248114|ref|XP_004017810.1| PREDICTED: Bloom syndrome protein [Ovis aries]
Length = 1429
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 670 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 729
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 730 SLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLI 789
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E +A F IDE HCVS+WGHDFRPDY+R+++LR+ F + +P+MA
Sbjct: 790 STLENLYERGLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQKFPS---------VPVMA 840
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 841 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 878
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 100/175 (57%), Gaps = 12/175 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVVATIAFGM 574
IIY +R+E ++A+ L G+ A AY+A L S V H +++ +V+ ATIAFGM
Sbjct: 904 IIYCLSRRECDTMAETLQNDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGM 963
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTL-LPSRRS 630
GIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L Y +++ + L L +
Sbjct: 964 GIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCILFYAYHDVTRLKRLILMEKDG 1023
Query: 631 EDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGE-DFSHEKCQL-----CDVC 678
T++ + L Y N + CR L+ YFGE +F+ C+ CD C
Sbjct: 1024 NRHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENEFNPHFCKKYPDVSCDNC 1078
>gi|418516874|ref|ZP_13083044.1| DNA helicase [Xanthomonas axonopodis pv. malvacearum str. GSPB1386]
gi|410706471|gb|EKQ64931.1| DNA helicase [Xanthomonas axonopodis pv. malvacearum str. GSPB1386]
Length = 598
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 128/216 (59%), Gaps = 15/216 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ LL + FG+ + Q+ + A +D LVL TG GKSLC+Q+PALL + +V+SP
Sbjct: 6 HELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIGIVVSP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ L + GV A FL S + +VE+ L G ++YV PE + L +
Sbjct: 66 LIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERL--LTQRF 123
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + +P MALTA
Sbjct: 124 LSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HVPRMALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA + +I + L + FV +SF RPN+R++V
Sbjct: 175 TADPPTQREIAERLDLVDARHFV-SSFDRPNIRYTV 209
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 4/167 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A+ LC G A Y+A LP F ++ ATIAFGMG
Sbjct: 232 IVYAMSRRKVEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+SLE YYQE GRAGRD A+ C ++ + ++ + +
Sbjct: 292 IDKPDVRFVAHVDLPKSLEGYYQETGRAGRDSDPAEAWLCYGLGDVVLLKQMIEQGEAAE 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ K+ R D + CR ++L+ FGE + + C CD C+
Sbjct: 352 ERKRLERAKLDHLLGYCESMQCRRQVLLAGFGETYP-KPCGNCDNCL 397
>gi|148827918|ref|YP_001292671.1| frataxin-like protein [Haemophilus influenzae PittGG]
gi|148719160|gb|ABR00288.1| frataxin-like protein [Haemophilus influenzae PittGG]
Length = 619
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK FG+ S + Q+E ++A L D LV+ ATG+GKSLC+QIPAL + +VISPL
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINATLNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A FL S Q +V+ K + G ++YV PE V +
Sbjct: 78 ISLMKDQVDQLQANGIEADFLNSSQTLAQQQQVQNKLISGQLKLLYVSPEKV--MTNSFF 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L + AIDE HC+S+WGHDFRP+Y +L L+ +F D P+MALTAT
Sbjct: 136 QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFP---------DAPIMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A ++DIL+ L++ K++ SF RPN+R++++
Sbjct: 187 ADYATQQDILRHLNLKNLHKYI-GSFDRPNIRYTLE 221
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 145/280 (51%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + IIY +R + IA+ L GV AAAY+A + + RV +
Sbjct: 225 KPMEQLTRFVLAQKGKSGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQD 284
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 285 FQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 344
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + + +L P R+ E +A ++ + CR +L+ YFGE
Sbjct: 345 PADYAWLQKILFEKPETPQRQIEQHKLEAIGEFAE-------SQTCRRLVLLNYFGEH-R 396
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
C CD+C+D P + L + ++ + Q + G+ QK ++R
Sbjct: 397 QTPCNNCDICLDPPKKYDGLVDAQKVMSTIYRV--GQCFGAHYVIAVLRGMHNQKIIERQ 454
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ K+ V I +++S+++ W+ + R + + G++++
Sbjct: 455 HHKLSVYGIGKDKSKEH-------WQSVIRQLIHLGFVQQ 487
>gi|21243851|ref|NP_643433.1| DNA helicase [Xanthomonas axonopodis pv. citri str. 306]
gi|21109451|gb|AAM37969.1| DNA helicase [Xanthomonas axonopodis pv. citri str. 306]
Length = 598
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 128/216 (59%), Gaps = 15/216 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ LL + FG+ + Q+ + A +D LVL TG GKSLC+Q+PALL + +V+SP
Sbjct: 6 HELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIGIVVSP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ L + GV A FL S + +VE+ L G ++YV PE + L +
Sbjct: 66 LIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERL--LTQRF 123
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + +P MALTA
Sbjct: 124 LSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HVPRMALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA + +I + L + FV +SF RPN+R++V
Sbjct: 175 TADPPTQREIAERLDLVDARHFV-SSFDRPNIRYTV 209
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A+ LC G A Y+A LP F ++ ATIAFGMG
Sbjct: 232 IVYAMSRRKVEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+SLE YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 292 IDKPDVRFVAHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDVVLLKQMIEQGEAAE 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ K+ R D + CR ++L+ FGE + + C CD C+
Sbjct: 352 ERKRLERAKLDHLLGYCESMQCRRQVLLAGFGETYP-KPCGNCDNCL 397
>gi|381169797|ref|ZP_09878960.1| ATP-dependent DNA helicase RecQ [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380689815|emb|CCG35447.1| ATP-dependent DNA helicase RecQ [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 598
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 128/216 (59%), Gaps = 15/216 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ LL + FG+ + Q+ + A +D LVL TG GKSLC+Q+PALL + +V+SP
Sbjct: 6 HELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIGIVVSP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ L + GV A FL S + +VE+ L G ++YV PE + L +
Sbjct: 66 LIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERL--LTQRF 123
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + +P MALTA
Sbjct: 124 LSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HVPRMALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA + +I + L + FV +SF RPN+R++V
Sbjct: 175 TADPPTQREIAERLDLVDARHFV-SSFDRPNIRYTV 209
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A+ LC G A Y+A LP F ++ ATIAFGMG
Sbjct: 232 IVYAMSRRKVEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+SLE YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 292 IDKPDVRFVAHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDVVLLKQMIEQGEAAE 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ K+ R D + CR ++L+ FGE + + C CD C+
Sbjct: 352 ERKRLERAKLDHLLGYCESMQCRRQVLLAGFGETYP-KPCGNCDNCL 397
>gi|298209031|ref|YP_003717210.1| ATP-dependent DNA helicase [Croceibacter atlanticus HTCC2559]
gi|83848958|gb|EAP86827.1| putative ATP-dependent DNA helicase [Croceibacter atlanticus
HTCC2559]
Length = 734
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 96/254 (37%), Positives = 144/254 (56%), Gaps = 28/254 (11%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
E+ ++ LKK+FG S K Q++ + + +++ D V+ TG GKSLC+Q+PAL+ +
Sbjct: 5 EINLHEQLKKYFGFSQFKGLQEQVIKSIVSNEDTFVIMPTGGGKSLCYQLPALIKDGTAI 64
Query: 218 VISPLISLMHDQCSKL----SKHGVTACFLGSGQPDNKVEQKAL---RGMYSIIYVCPET 270
V+SPLI+LM +Q L S+ G+ A L S ++ Q L G+ ++YV PE+
Sbjct: 65 VVSPLIALMKNQVDALRSISSQEGI-AHVLNSSLNKTEINQVKLDITNGVTKLLYVAPES 123
Query: 271 VIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
+ + + + I+ AIDE HC+S+WGHDFRP+YR L + + G D
Sbjct: 124 LTK--DEYVDFLKEQTISFLAIDEAHCISEWGHDFRPEYRNLKKIIKRIGD--------D 173
Query: 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFC 390
IP++ LTATAT +V+EDILK+L+MS F SF RPNL + V R K+ F
Sbjct: 174 IPIIGLTATATPKVQEDILKNLNMSNANTFK-ASFNRPNLYYEV-------RPKTKEVFS 225
Query: 391 QLIDIYTKKKKTGE 404
+I KK+TG+
Sbjct: 226 DIIRFI--KKRTGK 237
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 100/194 (51%), Gaps = 7/194 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK +A+ L G+ A Y+A L + F ++VVVATIAFGMG
Sbjct: 240 IIYCLSRKSVEELAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV---LYANLSSMPTLLPSRRSED 632
IDK +VR +IH+ P+SLE+YYQE GRAGRDG C+ Y ++ + + + +
Sbjct: 300 IDKPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAFYAYKDIEKLEKFMSGKPVAE 359
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ--LCDVCVDGPPEMKNLKE 690
Q + + +L + Y TS R K L+ YFGE F E D + P K+
Sbjct: 360 Q-EIGHALLQEVVAYA-ETSMSRRKFLLHYFGESFETETGDGGNMDDNIRNPKTKTEAKD 417
Query: 691 EANILMQVIAAYNE 704
E +L++ I NE
Sbjct: 418 EVTLLLKTIKDTNE 431
>gi|418521576|ref|ZP_13087619.1| DNA helicase [Xanthomonas axonopodis pv. malvacearum str. GSPB2388]
gi|410702421|gb|EKQ60927.1| DNA helicase [Xanthomonas axonopodis pv. malvacearum str. GSPB2388]
Length = 598
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 128/216 (59%), Gaps = 15/216 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ LL + FG+ + Q+ + A +D LVL TG GKSLC+Q+PALL + +V+SP
Sbjct: 6 HELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIGIVVSP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ L + GV A FL S + +VE+ L G ++YV PE + L +
Sbjct: 66 LIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERL--LTQRF 123
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + +P MALTA
Sbjct: 124 LSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HVPRMALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA + +I + L + FV +SF RPN+R++V
Sbjct: 175 TADPPTQREIAERLDLVDARHFV-SSFDRPNIRYTV 209
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 89/168 (52%), Gaps = 6/168 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVVATIAFGM 574
I+Y +R++ A+ LC G A Y+A LP F HE+ + ++ ATIAFGM
Sbjct: 232 IVYAMSRRKVEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLHEDGI-IMAATIAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSE 631
GIDK +VR + H P+SLE YYQE GRAGRDG A+ C ++ + ++ +
Sbjct: 291 GIDKPDVRFVAHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDVVLLKQMIEQGEAA 350
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
++ K+ R D + CR ++L+ FGE + + C CD C+
Sbjct: 351 EERKRLERAKLDHLLGYCESMQCRRQVLLAGFGETYP-KPCGNCDNCL 397
>gi|171057247|ref|YP_001789596.1| ATP-dependent DNA helicase RecQ [Leptothrix cholodnii SP-6]
gi|170774692|gb|ACB32831.1| ATP-dependent DNA helicase RecQ [Leptothrix cholodnii SP-6]
Length = 659
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 134/220 (60%), Gaps = 19/220 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVI 219
+L + FG+S+ + Q+ + +A D LVL TG GKSLC+Q+PA++ + V VV+
Sbjct: 15 VLGEVFGYSAFRGQQQAIIEHVVAGGDALVLMPTGGGKSLCYQVPAIVRQRAGQGVAVVV 74
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVI--RL 274
SPLI+LMHDQ L + GV A FL S + + +E++ L G +++YV PE ++ RL
Sbjct: 75 SPLIALMHDQVGALEEVGVHASFLNSTLDNAQAQAIERELLSGRLTMLYVAPERLLTPRL 134
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
L L E ++LFAIDE HCVS+WGHDFR DY +LSVL E F +P +
Sbjct: 135 QGMLASLHERGRLSLFAIDEAHCVSQWGHDFREDYLQLSVLHEQFPG---------VPRI 185
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA R DI++ L + FV +SF RPN+R+++
Sbjct: 186 ALTATADDHTRADIVERLQLQDARLFV-SSFDRPNIRYTL 224
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 110/253 (43%), Gaps = 33/253 (13%)
Query: 487 DRSFERTDLLNKPAER---LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYN 543
DR R L+ K R L +++ E I+Y +RK+ A +L GV A Y+
Sbjct: 216 DRPNIRYTLVEKVKPRDQLLRFIRDEHEGEAGIVYCGSRKKVEETASWLAEQGVDALPYH 275
Query: 544 ASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRA 603
A L RR F V+VATIAFGMGIDK +VR + H P+++E YYQE GRA
Sbjct: 276 AGLDAEVRRRHQDRFLREDGLVMVATIAFGMGIDKPDVRFVAHLDLPKNIEGYYQETGRA 335
Query: 604 GRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILV 660
GRDG AD + A++ + ++ + ++ K+ R D CR L+
Sbjct: 336 GRDGEAADAWMTYGLADVVNQRRMIDESPAAEEFKRVQRGKLDALLALAEAHDCRRVRLL 395
Query: 661 EYFGEDFSH--------------------------EKCQLCDVCVDGPPEMKNLKEEANI 694
YFGE + +C CD C++ PP + + E A
Sbjct: 396 SYFGEQYREPPDVGPPQGGRSPLGGQGVPEGLTVGARCGNCDNCLN-PPSIWDATESARK 454
Query: 695 LMQVIAAYNEQSN 707
L+ I + +
Sbjct: 455 LLSCIYRFQQHGQ 467
>gi|390953896|ref|YP_006417654.1| ATP-dependent DNA helicase RecQ [Aequorivita sublithincola DSM
14238]
gi|390419882|gb|AFL80639.1| ATP-dependent DNA helicase RecQ [Aequorivita sublithincola DSM
14238]
Length = 692
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 136/253 (53%), Gaps = 24/253 (9%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ LLK HFG+ Q+E ++ L D + + TG GKSLCFQ+PAL +VIS
Sbjct: 9 IADLLKTHFGYDKFLPNQEEIINNILDQKDTIAIMPTGGGKSLCFQLPALALDGTAIVIS 68
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ--KALR-GMYSIIYVCPETVIRLIKP 277
PLI+LM DQ L +G++A F S QP + +Q K L+ G ++YV PE++ +
Sbjct: 69 PLIALMKDQVDALKANGISATFFNSSQPYEEQQQVLKELQNGNLKLLYVAPESLPQ---- 124
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L + S I LFAIDE HC+S WGHDFRP Y +L L+E F +PL+ALT
Sbjct: 125 LNFILNSIKINLFAIDEAHCISSWGHDFRPAYTQLKSLKEQFPT---------VPLIALT 175
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA-----SYKKDFCQL 392
ATA REDI L + F+ SF RPNL V+ + ++ +D C +
Sbjct: 176 ATADRATREDIAAQLSIPNAKTFI-ASFDRPNLYLDVRPGQNRNKQILDFLKIHRDECGI 234
Query: 393 IDIYTKKKKTGEK 405
IY +K+ EK
Sbjct: 235 --IYCLSRKSTEK 245
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 97/169 (57%), Gaps = 6/169 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK T +A L G KA AY+A L + ++ F + ++VATIAFGMG
Sbjct: 234 IIYCLSRKSTEKLAATLSSKGYKAEAYHAGLTSEERTQIQENFINDVSPIIVATIAFGMG 293
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P++++ YYQE GR+GRDG A +L+ + + + L + +E
Sbjct: 294 IDKSNVRWVIHYNMPKNIDGYYQEIGRSGRDGLPAHTILFYSFADVIML--RKFAEGTET 351
Query: 636 QAYRM--LSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
+AY++ L ++ S CR K L+ YFGE + E C CD+C P
Sbjct: 352 EAYQLAKLERMQQFAEALS-CRRKALLGYFGEHIT-EDCGNCDICKTPP 398
>gi|346725926|ref|YP_004852595.1| DNA helicase [Xanthomonas axonopodis pv. citrumelo F1]
gi|346650673|gb|AEO43297.1| DNA helicase [Xanthomonas axonopodis pv. citrumelo F1]
Length = 598
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 134/229 (58%), Gaps = 16/229 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ LL + FG+ + Q+ + A +D LVL TG GKSLC+Q+PALL + +V+SP
Sbjct: 6 HELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIGIVVSP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ L + GV A FL S + +VE+ L G ++YV PE + L +
Sbjct: 66 LIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERL--LTQRF 123
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + IP MALTA
Sbjct: 124 LSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HIPRMALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKK 387
TA + +I + L + FV ++F RPN+R++V K S+R ++
Sbjct: 175 TADPPTQREIAERLDLVDARHFV-STFDRPNIRYTVVQ-KDSARKQLQE 221
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 4/167 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A+ LC G A Y+A LP F ++ ATIAFGMG
Sbjct: 232 IVYAMSRRKVEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+SLE YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 292 IDKPDVRFVAHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDVVLLKQMIEQGEAAE 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ K+ R D + CR ++L+ FGE ++ + C CD C+
Sbjct: 352 ERKRLERAKLDHLLGYCESMQCRRQVLLAGFGETYA-KPCGNCDNCL 397
>gi|297622522|ref|YP_003703956.1| ATP-dependent DNA helicase RecQ [Truepera radiovictrix DSM 17093]
gi|297163702|gb|ADI13413.1| ATP-dependent DNA helicase RecQ [Truepera radiovictrix DSM 17093]
Length = 598
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 130/220 (59%), Gaps = 19/220 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +L+ FG+ + + Q + + D LVL TG GKSLC+QIPALL V VV+
Sbjct: 4 RAQHVLQTVFGYPAFRGLQAQVIERVARGGDALVLMPTGGGKSLCYQIPALLRPGVGVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ L + GV A +L S Q VE+ L G ++YV PE RL+
Sbjct: 64 SPLIALMKDQVDALLQLGVRAAYLNSSLSSQEAAAVERALLAGELKLLYVAPE---RLLT 120
Query: 277 P--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
P L LA ++ +ALFA+DE HCVS+WGHDFRP+Y LSVL E F +P +
Sbjct: 121 PRFLSLLARAQ-LALFAVDEAHCVSQWGHDFRPEYLGLSVLAERFPG---------VPRV 170
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA R ++++ L + + FV +SF RPNLR++V
Sbjct: 171 ALTATADEATRREMVERLSLQRAQPFV-SSFDRPNLRYTV 209
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 96/182 (52%), Gaps = 8/182 (4%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHEN 561
LS + + G I+Y +R+ A +L GV+A Y+A L + +R+ H E F
Sbjct: 220 LSFYRARHQGGAGIVYCLSRRSVEETAAWLVKAGVEALPYHAGL-SAAVRQEHQERFLRE 278
Query: 562 KLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621
V+VATIAFGMGIDK +VR + H P+SLE YYQE GRAGRDG AD + L +
Sbjct: 279 DALVMVATIAFGMGIDKPDVRFVAHLELPKSLEGYYQETGRAGRDGDPADAFMTYGLEDV 338
Query: 622 PT----LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDV 677
T L S E + R L Y T+ CR ++L+ YFGE + E C CD
Sbjct: 339 VTLRRLLAQSNAPEAVKRLEARKLEALLGY-CETARCRRQVLLAYFGETLA-EPCGNCDT 396
Query: 678 CV 679
C+
Sbjct: 397 CL 398
>gi|20093292|ref|NP_619367.1| DNA helicase RecQ [Methanosarcina acetivorans C2A]
gi|19918649|gb|AAM07847.1| DNA helicase RecQ [Methanosarcina acetivorans C2A]
Length = 909
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 138/228 (60%), Gaps = 19/228 (8%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
+++S+L+++FG+++ + Q+E + L D VL TG GKS+C+Q+P+LL V VV
Sbjct: 23 ARMHSVLRQYFGYTAFRPLQEEIIRDVLDRKDVFVLMPTGGGKSICYQLPSLLLDGVTVV 82
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLI 275
+SPLISLM DQ L +G+ A + S Q + V+ L I+Y+ PE RL+
Sbjct: 83 VSPLISLMKDQVDGLEANGIAAACMNSTQSAREIRDVKSAFLENRLKILYIAPE---RLM 139
Query: 276 KPLQRLAESRG-IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
P +G I+LFAIDE HC+S+WGHDFRP+YR+L +LR+ K+ D+P++
Sbjct: 140 MPGTITFLKKGKISLFAIDEAHCISEWGHDFRPEYRKLKLLRDP------KTGFPDVPVI 193
Query: 335 ALTATATIQVREDILKSLHM----SKGTKFVLTSFFRPNLRFSVKHSK 378
ALTATAT +VR+DI+ L + KG + SF R NL + V+ K
Sbjct: 194 ALTATATGRVRKDIIVQLGLDLDPEKG--LYVASFNRSNLYYEVRPKK 239
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 130/255 (50%), Gaps = 17/255 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R ++ K L G +A Y+A L S+ R F ++ ++++VATIAFGMG
Sbjct: 258 IIYCQSRNNVETLTKKLNLAGFRALPYHAGLSDSERSRNQEMFIKDDVDIIVATIAFGMG 317
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
IDK NVR +IHY P++LE+YYQE GR GRDG +C+L+ + + + + +E
Sbjct: 318 IDKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFIAQKTNEK 377
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ + L Y + CR + L+EYFGE+ S C CD C+ P + + E A
Sbjct: 378 EKDISLVQLRQMVAY-CEGNKCRRQALLEYFGEELSA-SCGNCDTCLR-PKDTFDGTEAA 434
Query: 693 NILMQVIAAYNEQ--SNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLL 750
L+ I N++ +N + D + +G K +K + K+ K +++
Sbjct: 435 RKLITCIQELNQRFGTNYVID---VLTGSKNKKVRKNRHEKL---KSHGNGREFTKEQ-- 486
Query: 751 WWRGLARIMENKGYI 765
WR LA M N G +
Sbjct: 487 -WRSLASEMLNTGLL 500
>gi|68070073|ref|XP_676948.1| ATP-dependent DNA helicase [Plasmodium berghei strain ANKA]
gi|56496869|emb|CAH99540.1| ATP-dependent DNA helicase, putative [Plasmodium berghei]
Length = 735
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 129/205 (62%), Gaps = 16/205 (7%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT--- 212
+ +K+ KK+FG+ +LK+FQ EA+ A D ++ ATG GKSLC+QIP+++
Sbjct: 31 EMRIKMEEAQKKYFGYKNLKHFQIEAVHAVFHKKDSFLVMATGMGKSLCYQIPSIMNEYK 90
Query: 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN--KVEQKALRGMYSIIYVCPET 270
K+ +VISPLISLM DQ L++ +++ FLGSGQ N K+ + +G+Y+I+Y PE
Sbjct: 91 NKLTIVISPLISLMKDQVDNLNRKKISSVFLGSGQKKNNQKILSEIKQGLYNIVYCSPEY 150
Query: 271 VIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
+ K L L +++ I L AIDE HC+S+WGHDFRP YR+L N L+ +
Sbjct: 151 ALNN-KNLFILLKNK-ILLVAIDEAHCMSEWGHDFRPSYRKL---------NELRIILKG 199
Query: 331 IPLMALTATATIQVREDILKSLHMS 355
IP M LTAT T V+ DILK+L+ +
Sbjct: 200 IPFMCLTATCTKSVQNDILKNLNFN 224
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 96/162 (59%), Gaps = 12/162 (7%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
T+IYV ++K+ +I +L G+ Y++ L + R H F ++++++V+AT+AFGM
Sbjct: 284 TLIYVNSKKDCENIYNFLNDRGLLVRMYHSDLTNEEKREAHEMFLKDEIQIVIATVAFGM 343
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS----SMPTLLPSRRS 630
GIDK ++RRIIHYG+ +SLEAY Q+ GRAGRDG A+ +L+ +++ S +L +
Sbjct: 344 GIDKPDIRRIIHYGFSRSLEAYVQQVGRAGRDGGNAEAILFFHINEESKSKNLILRENIA 403
Query: 631 EDQTKQAYR-------MLSDCFRYGMNTSCCRAKILVEYFGE 665
++ ++ M + Y +T C R KI +YF E
Sbjct: 404 NHMMEKNFKRVQHIINMFTQSSDYAYSTICRRKKIY-DYFDE 444
>gi|148826626|ref|YP_001291379.1| prolyl-tRNA synthetase [Haemophilus influenzae PittEE]
gi|148716786|gb|ABQ98996.1| prolyl-tRNA synthetase [Haemophilus influenzae PittEE]
Length = 615
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK FG+ S + Q+E ++A L D LV+ ATG+GKSLC+QIPAL + +VISPL
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINATLNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A FL S Q +V+ K + G ++YV PE V +
Sbjct: 78 ISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKV--MTNSFF 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L + AIDE HC+S+WGHDFRP+Y +L L+ +F D P+MALTAT
Sbjct: 136 QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFP---------DAPIMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A ++DIL+ L++ K++ SF RPN+R++++
Sbjct: 187 ADYATQQDILRHLNLKNLHKYI-GSFDRPNIRYTLE 221
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 112/207 (54%), Gaps = 17/207 (8%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + IIY +R + I + L GV AAAY+A + ++ RV +
Sbjct: 225 KPMEQLTRFVLAQKGKSGIIYCNSRNKVERITESLRNKGVSAAAYHAGMETARRDRVQQD 284
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 285 FQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 344
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + + +L P R+ E +A ++ + CR +L+ YFGE
Sbjct: 345 PADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAE-------SQTCRRLVLLNYFGEH-R 396
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANIL 695
C CD+C+D P + L + ++
Sbjct: 397 QTPCNNCDICLDPPKKYDGLVDAQKVM 423
>gi|345509360|ref|ZP_08788959.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D1]
gi|345454812|gb|EEO52054.2| ATP-dependent DNA helicase RecQ [Bacteroides sp. D1]
Length = 602
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 126/214 (58%), Gaps = 16/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ + + Q+E + L D LVL TG GKS+C+Q+PALL VV+SPLIS
Sbjct: 5 LKTYFGYDNFRPLQEEIIRHILNKQDALVLMPTGGGKSICYQLPALLCEGTAVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + + + G ++Y+ PE +L+ L
Sbjct: 65 LMKDQVEALLANGIAAGALNSSNDETENANLRRACIEGRLKLLYISPE---KLLAEKDYL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
I+LFAIDE HC+S+WGHDFRP+Y ++ VL + F IP++ALTATA
Sbjct: 122 LRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFP---------QIPIVALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
REDI++ LH++ F+ +SF RPN+ +VK
Sbjct: 173 KITREDIVRQLHLNHPRTFI-SSFDRPNISLTVK 205
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 97/169 (57%), Gaps = 3/169 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L +F ++++VV ATIAFGMG
Sbjct: 230 IIYCMSRSKTETVAQMLQKQGIRCGVYHAGLSTQHRDETQNDFINDRIQVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG ++ VL+ +L + L +Q
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSNTVLFYSLGDLILLTKFASESNQQN 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
L +Y CR +IL+ YFGE + E C CDVC + PP+
Sbjct: 350 INLEKLQRMQQYA-EADICRRRILLSYFGET-TTEDCGNCDVCKN-PPQ 395
>gi|261867419|ref|YP_003255341.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|365967218|ref|YP_004948780.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|416074416|ref|ZP_11584505.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|416090811|ref|ZP_11588163.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|416103119|ref|ZP_11589174.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444337220|ref|ZP_21151227.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|444345652|ref|ZP_21153662.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|444348097|ref|ZP_21155856.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|261412751|gb|ACX82122.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348006870|gb|EGY47245.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|348008390|gb|EGY48666.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348009101|gb|EGY49290.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|365746131|gb|AEW77036.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443542609|gb|ELT52921.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|443547331|gb|ELT56848.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|443547710|gb|ELT57152.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 629
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 132/214 (61%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ S + Q+E ++A L DCLV+ ATG+GKSLC+QIPAL +V+SPLI
Sbjct: 34 VLHSVFGYQSFRKGQQEIINAVLNGQDCLVIMATGTGKSLCYQIPALCFDGTTLVVSPLI 93
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +GV A +L S Q +V+ +A+ G ++Y+ PE V + +
Sbjct: 94 SLMKDQVDQLRANGVEADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEKV--MTSSFFQ 151
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
++ AIDE HC+S+WGHDFRP+Y +L L+ +F ++P+MALTATA
Sbjct: 152 FISLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGSFP---------NVPIMALTATA 202
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++DIL++L +++ F + SF RPN+R+++
Sbjct: 203 DQTTQQDILQNLRLNR-PHFYVGSFDRPNIRYTL 235
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 141/280 (50%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L + I+Y +R + IA+ L GV+AAAY+A + +V +
Sbjct: 240 KPMEQLCRFVLAQKGKSGIVYCNSRNKVERIAETLYNKGVRAAAYHAGMENGLREKVQRD 299
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 300 FQRDNIQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYD 359
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + +L P R+ E QA ++ + CR +L+ YFGE
Sbjct: 360 PADYVWLNKMLMEKPETPQRQIEQHKLQAIGEFAE-------SQTCRRLVLLNYFGEH-R 411
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
CQ CD+C+D PP+ N +A +M I Q + G+ QK D+
Sbjct: 412 QTPCQNCDICLD-PPKKYNGLLDAQKIMSAIYR-TGQCYGAHYVIAVLRGMNNQKIRDQH 469
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ ++ V I +E +Y W+ + R + + G +R+
Sbjct: 470 HDQLSVYGIGKEHGTEY-------WQSVLRQLVHLGLVRQ 502
>gi|145628391|ref|ZP_01784192.1| organic solvent tolerance protein [Haemophilus influenzae 22.1-21]
gi|145638475|ref|ZP_01794085.1| organic solvent tolerance protein [Haemophilus influenzae PittII]
gi|260583174|ref|ZP_05850954.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae NT127]
gi|386266538|ref|YP_005830030.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae R2846]
gi|144980166|gb|EDJ89825.1| organic solvent tolerance protein [Haemophilus influenzae 22.1-21]
gi|145272804|gb|EDK12711.1| organic solvent tolerance protein [Haemophilus influenzae PittII]
gi|260093792|gb|EEW77700.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae NT127]
gi|309751607|gb|ADO81591.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae R2866]
gi|309973774|gb|ADO96975.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae R2846]
Length = 619
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK FG+ S + Q+E ++A L D LV+ ATG+GKSLC+QIPAL + +VISPL
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A FL S Q +V+ K + G ++YV PE V +
Sbjct: 78 ISLMKDQVDQLQANGIEADFLNSSQTLAQQQQVQNKLISGQLKLLYVSPEKV--MTNSFF 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L + AIDE HC+S+WGHDFRP+Y +L L+ +F D P+MALTAT
Sbjct: 136 QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFP---------DAPIMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A ++DIL+ L++ K++ SF RPN+R++++
Sbjct: 187 ADYATQQDILRHLNLKNLHKYI-GSFDRPNIRYTLE 221
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 145/280 (51%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + IIY +R + IA+ L GV AAAY+A + + RV +
Sbjct: 225 KPMEQLTRFVLAQKGKSGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQD 284
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 285 FQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 344
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + + +L P R+ E +A ++ + CR +L+ YFGE
Sbjct: 345 PADYAWLQKILFEKPETPQRQIEQHKLEAIGEFAE-------SQTCRRLVLLNYFGEH-R 396
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
C CD+C+D P + L + ++ + Q + G+ QK ++R
Sbjct: 397 QTPCNNCDICLDPPKKYDGLVDAQKVMSTIYRV--GQCFGAHYVIAVLRGMHNQKIIERQ 454
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ K+ V I +++S+++ W+ + R + + G++++
Sbjct: 455 HHKLSVYGIGKDKSKEH-------WQSVIRQLIHLGFVQQ 487
>gi|293373225|ref|ZP_06619587.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus SD CMC 3f]
gi|292631873|gb|EFF50489.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus SD CMC 3f]
Length = 550
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 128/223 (57%), Gaps = 16/223 (7%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
D + LK +FG+ S + Q+E + L D LVL TG GKS+C+Q+PALL
Sbjct: 7 DKSASMRETLKTYFGYDSFRPLQEEIIRHILNKRDALVLMPTGGGKSICYQLPALLCKGT 66
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVI 272
VV+SPLISLM DQ L +G+ A L S + ++ + + G ++Y+ PE
Sbjct: 67 AVVVSPLISLMKDQVEALLANGIAAGALNSSNDETENVQLRRACVEGRLKLLYISPE--- 123
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
+L+ L I+LFAIDE HC+S+WGHDFRP+Y ++ VL + F IP
Sbjct: 124 KLLAEKDYLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFP---------QIP 174
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
++ALTATA REDI++ LH++ F+ +SF RPN+ +VK
Sbjct: 175 IVALTATADKITREDIVRQLHLNHPRIFI-SSFDRPNISLTVK 216
Score = 122 bits (306), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 95/169 (56%), Gaps = 3/169 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L +F ++++VV ATIAFGMG
Sbjct: 241 IIYCMSRNKTETVAQMLQKQGIRCGVYHAGLSTQHRDETQNDFINDRIQVVCATIAFGMG 300
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG + VL+ +L + L +Q
Sbjct: 301 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSSTVLFYSLGDLILLTKFASESNQQN 360
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
L +Y CR +IL+ YFGE + E C CDVC PP+
Sbjct: 361 INLEKLQRMQQYA-EADICRRRILLSYFGET-TTEDCGNCDVC-KNPPQ 406
>gi|357418306|ref|YP_004931326.1| DNA helicase [Pseudoxanthomonas spadix BD-a59]
gi|355335884|gb|AER57285.1| DNA helicase [Pseudoxanthomonas spadix BD-a59]
Length = 594
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 98/232 (42%), Positives = 132/232 (56%), Gaps = 19/232 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L + FGH + Q + + HD LVL TG GKSLC+Q+PALL +V+SPLI
Sbjct: 3 ILHRVFGHPGFRGEQAAIVEHVASGHDALVLMPTGGGKSLCYQVPALLREGTAIVVSPLI 62
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LM DQ L + GV A FL S +VE++ L G ++YV PE RL+ P
Sbjct: 63 ALMQDQVEALRQLGVRAEFLNSSLESGEAARVERELLAGQIDLLYVAPE---RLLTPRLL 119
Query: 281 LAESRG-IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
R IALFAIDE HCVS+WGHDFRP+YR+L+VL E + +IP +ALTAT
Sbjct: 120 SLLDRARIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------NIPRIALTAT 170
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQ 391
A + +I + L + +FV +SF RPN+R++V R +DF Q
Sbjct: 171 ADPPTQAEIAERLQLQGARRFV-SSFDRPNIRYTVVQKDNGRR--QLQDFLQ 219
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 90/181 (49%), Gaps = 9/181 (4%)
Query: 506 LQEPLED---GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
LQ+ L+D I+Y +R++ A++LC G A Y+A L F
Sbjct: 214 LQDFLQDHKGSAGIVYCMSRRKVEQTAQFLCEKGFNALPYHAGLDAQVRASNQRRFLRED 273
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622
V+ ATIAFGMGIDK +VR + H P+SLE YYQE GRAGRDG A L L +
Sbjct: 274 GIVMCATIAFGMGIDKPDVRFVAHTDLPKSLEGYYQETGRAGRDGEPAQAWLAYGLGDVV 333
Query: 623 TLL----PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVC 678
L SE++ + R L Y + CR ++L+ FGE++ + C CD C
Sbjct: 334 LLKQMIEQGEASEERKRLERRKLDQLLGY-CESMQCRRQVLLAGFGENYP-KPCGNCDNC 391
Query: 679 V 679
+
Sbjct: 392 L 392
>gi|124484849|ref|YP_001029465.1| hypothetical protein Mlab_0020 [Methanocorpusculum labreanum Z]
gi|124362390|gb|ABN06198.1| ATP-dependent DNA helicase, RecQ family [Methanocorpusculum
labreanum Z]
Length = 493
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 128/219 (58%), Gaps = 19/219 (8%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ L+K+F H + + Q+E + ++ D L + ATG GKSLC+Q+PAL+ + +VIS
Sbjct: 5 IQQTLEKYFHHQTFRPNQQEIIEKIVSGRDVLAVMATGGGKSLCYQLPALMLDGMTIVIS 64
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ LS GVT L S Q +VEQ G I+YV PE R + P
Sbjct: 65 PLIALMKDQVDSLSNQGVTVETLNSLQTYDERRRVEQDMRDGKVRILYVSPE---RAVTP 121
Query: 278 LQRLAESRG--IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
A G +ALFA+DE HC+S WGH FRP+YR + LR+ F +P+ A
Sbjct: 122 -AFFATLSGCKVALFAVDEAHCISMWGHQFRPEYREIKHLRDKFPG---------VPIAA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TATAT++VREDI+ L ++ +F+ SF R NLR+SV
Sbjct: 172 FTATATLRVREDIVNELRLNDPAEFI-GSFDRRNLRYSV 209
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 105/210 (50%), Gaps = 14/210 (6%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+D IIY +R T +A+ L + A Y+A LP + RV F N + V+ AT+
Sbjct: 230 KDDPGIIYCFSRASTEELAERLRKVHIMANPYHAGLPTPERSRVQEGFLNNSIRVICATV 289
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPS 627
AFGMGIDK +VR +IH P+ +E+YYQE GRAGRDG +C+L+ + + +L
Sbjct: 290 AFGMGIDKPDVRYVIHAHMPKDIESYYQETGRAGRDGKAGECLLFYSGGDRRKIENMLER 349
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKN 687
++ + + R D CR ++L+ YF E+ + C CD C G ++K
Sbjct: 350 EFTDKKKSEIAREKLDQMYAYCTAKSCRRQLLLSYFDEEI--QPCGNCDTC--GDKKIKQ 405
Query: 688 LKEEANILMQVIAAYNEQSNSMDDDDGIYS 717
K ++ ++ + D DGI +
Sbjct: 406 SKPAGSLTKMILTG-------VQDVDGILT 428
>gi|145640806|ref|ZP_01796388.1| frataxin-like protein [Haemophilus influenzae R3021]
gi|145274320|gb|EDK14184.1| frataxin-like protein [Haemophilus influenzae 22.4-21]
Length = 619
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK FG+ S + Q+E ++A L D LV+ ATG+GKSLC+QIPAL + +VISPL
Sbjct: 18 SVLKSIFGYQSFRKGQEEVINATLNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A FL S Q +V+ K + G ++YV PE V +
Sbjct: 78 ISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKV--MTNSFF 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L + AIDE HC+S+WGHDFRP+Y +L L+ +F D P+MALTAT
Sbjct: 136 QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFP---------DAPIMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A ++DIL+ L++ K++ SF RPN+R++++
Sbjct: 187 ADYATQQDILRHLNLKNLHKYI-GSFDRPNIRYTLE 221
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 145/280 (51%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + IIY +R + IA+ L GV AAAY+A + + RV +
Sbjct: 225 KPMEQLTRFVLAQKGKSGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQD 284
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 285 FQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 344
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + + +L P R+ E +A ++ + CR +L+ YFGE
Sbjct: 345 SADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAE-------SQTCRRLVLLNYFGEH-R 396
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
C CD+C+D P + L + ++ + Q + G+ QK ++R
Sbjct: 397 QTPCNNCDICLDPPKKYDGLVDAQKVMSTIYRV--GQCFGAHYVIAVLRGMHNQKIIERQ 454
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ K+ V I +++S+++ W+ + R + + G++++
Sbjct: 455 HHKLSVYGIGKDKSKEH-------WQSVIRQLIHLGFVQQ 487
>gi|406901072|gb|EKD43834.1| hypothetical protein ACD_72C00100G0005 [uncultured bacterium]
Length = 619
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 126/215 (58%), Gaps = 13/215 (6%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK FG+ S + Q+E + + D VL TG GKSLC+QIPALL + VVISPLI
Sbjct: 7 ILKTKFGYESFRFNQEEIIQTIMQKRDAFVLMPTGGGKSLCYQIPALLFDGLTVVISPLI 66
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIRLIKPLQR 280
+LM DQ L +G+ A ++ S +++ ++ R ++YV PE ++ +
Sbjct: 67 ALMKDQVDALRLNGIKAAYMNSSMDSDEISDLYEQLDRHEIKLLYVSPERLLGNNQQFLV 126
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
I+LFAIDE HC+S WGHDFRP+YR LS L+++F D+P +ALTATA
Sbjct: 127 YLRDLNISLFAIDEAHCISSWGHDFRPEYRMLSSLKKDFP---------DVPTIALTATA 177
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
R+DIL L + + FV +SF RPN+ +SV+
Sbjct: 178 DNLTRDDILNKLKLKNPSIFV-SSFNRPNINYSVE 211
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 98/168 (58%), Gaps = 7/168 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIYV +R +A+ L G Y+A L + +R F +++++++VATIAFGMG
Sbjct: 233 IIYVLSRNSAEKMAEKLKKDGFSTKPYHAGLNNEKRQRHQEMFIKDQVKIMVATIAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K NVR +IH P+++E+YYQE GRAGRDG ++ +LY + + L E+ +
Sbjct: 293 INKSNVRFVIHADLPKNIESYYQETGRAGRDGLKSEAILYYSGGDVVKLKRFAMVENNPE 352
Query: 636 QAYRMLSDCFRYGMNTSC----CRAKILVEYFGEDFSHEKCQLCDVCV 679
Q ML + M T C CR + ++ YFGE+ + +KC CDVC+
Sbjct: 353 QTRVMLHKLSQ--MATLCEANACRRRAILNYFGEE-APDKCDSCDVCM 397
>gi|170078505|ref|YP_001735143.1| ATP-dependent DNA helicase [Synechococcus sp. PCC 7002]
gi|169886174|gb|ACA99887.1| ATP-dependent DNA helicase [Synechococcus sp. PCC 7002]
Length = 712
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 134/236 (56%), Gaps = 20/236 (8%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ + LK FG+ + ++ QK ++A L + D L L TG+GKSLCFQ+PALL + VVIS
Sbjct: 7 LEAALKHFFGYDNFRHGQKAVITAALENRDILALMPTGAGKSLCFQLPALLKPGLTVVIS 66
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSG----QPDNKVEQKALRGMYSIIYVCPETVIR--L 274
PLI+LM DQ L+ +G+ A FL S Q +++ Q G ++YV PE +
Sbjct: 67 PLIALMQDQVDALTDNGIGATFLNSTLNLDQARSRI-QAIFNGNIKLLYVAPERLFNEGF 125
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ L + ++ G+ F +DE HCVS+WGHDFRP+YR+LS +R + P
Sbjct: 126 QQLLTDVDQTIGLTGFVVDEAHCVSEWGHDFRPEYRQLSRIRRRYPRT---------PCQ 176
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFC 390
A TATAT +VREDI+ L + + F TSF RPNL + V R SY + C
Sbjct: 177 AFTATATQRVREDIIDQLAL-QNPSFHCTSFNRPNLYYEV---LPKVRKSYTQLLC 228
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 123/258 (47%), Gaps = 13/258 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ +A L GVKA Y+A L +F + + V+VAT+AFGMG
Sbjct: 239 IIYCSSRKKVDELADRLKQDGVKALPYHAGLADRLRADYQEQFIRDDVPVMVATVAFGMG 298
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
I+K +VR ++HY P +LE YYQE+GRAGRDG A C L+ ++ + + E
Sbjct: 299 INKPDVRFVVHYDLPTNLERYYQESGRAGRDGEPAHCTLFYRAGDIKRAEYFIELKEDEQ 358
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ + AY+ L Y CR I + YFGE F + C CD C P +++ EA
Sbjct: 359 EKRIAYQQLQKMIDYAEGID-CRRTIQLSYFGEQFPGD-CGGCDNC-QNPRPIEDWTIEA 415
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWW 752
+ +A E+ D + G KK+K + + ++ I K W
Sbjct: 416 QKFLSCVARCRERYGMTYIID-VLRGSKKEKIIQNGHHQLSTYGIGLDHTKEA------W 468
Query: 753 RGLARIMENKGYIREGDD 770
+ L R + +G + E D
Sbjct: 469 KNLGRSLLYQGLMTETSD 486
>gi|145630467|ref|ZP_01786247.1| ATP-dependent DNA helicase [Haemophilus influenzae R3021]
gi|144983857|gb|EDJ91299.1| ATP-dependent DNA helicase [Haemophilus influenzae R3021]
Length = 619
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK FG+ S + Q+E ++A L D LV+ ATG+GKSLC+QIPAL + +VISPL
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A FL S Q +V+ K + G ++YV PE V +
Sbjct: 78 ISLMKDQVDQLQANGIEADFLNSSQTLAQQQQVQNKLISGQLKLLYVSPEKV--MTNSFF 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L + AIDE HC+S+WGHDFRP+Y +L L+ +F D P+MALTAT
Sbjct: 136 QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFP---------DAPIMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A ++DIL+ L++ K++ SF RPN+R++++
Sbjct: 187 ADYATQQDILRHLNLKNLHKYI-GSFDRPNIRYTLE 221
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 145/280 (51%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + IIY +R + IA+ L GV AAAY+A + + RV +
Sbjct: 225 KPMEQLTRFVLAQKGKSGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQD 284
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 285 FQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 344
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + + +L P R+ E +A ++ + CR +L+ YFGE
Sbjct: 345 PADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAE-------SQTCRRLVLLNYFGEH-R 396
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
C CD+C+D P + L + ++ + Q + G+ QK ++R
Sbjct: 397 QTPCNNCDICLDPPKKYDGLVDAQKVMSTIYRV--GQCFGAHYVIAVLRGMHNQKIIERQ 454
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ K+ V I +++S+++ W+ + R + + G++++
Sbjct: 455 HHKLSVYGIGKDKSKEH-------WQSVIRQLIHLGFVQQ 487
>gi|311068600|ref|YP_003973523.1| ATP-dependent nucleic acid helicase [Bacillus atrophaeus 1942]
gi|419820760|ref|ZP_14344369.1| putative ATP-dependent nucleic acid helicase [Bacillus atrophaeus
C89]
gi|310869117|gb|ADP32592.1| putative ATP-dependent nucleic acid helicase [Bacillus atrophaeus
1942]
gi|388475234|gb|EIM11948.1| putative ATP-dependent nucleic acid helicase [Bacillus atrophaeus
C89]
Length = 592
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 130/228 (57%), Gaps = 17/228 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEAL-SAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
K SLL +FG+ L+ Q++A+ S A + + TG GKS+C+QIPALL +V
Sbjct: 4 KARSLLAHYFGYEKLRPGQEQAIRSVTEAKKNTACIMPTGGGKSICYQIPALLFEGTTIV 63
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK--ALR-GMYSIIYVCPETVIRLI 275
ISPLISLM DQ L + G+ A ++ S Q + ++ + AL+ G Y + Y+ PE RL
Sbjct: 64 ISPLISLMKDQVDALEEAGIAAAYINSTQSNQDIQSRLTALKNGSYHLFYITPE---RLT 120
Query: 276 KP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
P R+ +S + L AIDE HC+S+WGHDFRP YR + +L + LK +M
Sbjct: 121 SPEFIRILQSITVPLVAIDEAHCISQWGHDFRPSYRNIEIL--------FRELKEKPVIM 172
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
ALTATAT +V EDI K LH+ K V T F R NL F V + R
Sbjct: 173 ALTATATPEVHEDICKQLHIEKENT-VYTGFSRDNLTFKVAKGENKDR 219
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 107/200 (53%), Gaps = 9/200 (4%)
Query: 510 LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVAT 569
LE G IIY TRKE I + L + A Y+ LP + +F ++++V+VAT
Sbjct: 230 LEAG--IIYTATRKEADRICEKLKRQHINAGRYHGGLPDEVRKEQQEQFLNDQIQVMVAT 287
Query: 570 IAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT----LL 625
AFGMGIDK N+R ++HY P+ +E+YYQEAGRAGRDG ++C+L + + +
Sbjct: 288 SAFGMGIDKSNIRFVLHYQIPKDMESYYQEAGRAGRDGLDSECILLFSPQDIMVQRFLIE 347
Query: 626 PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEM 685
S E + KQ + L Y +T C + +++YFGE C C C D +
Sbjct: 348 QSASDEGKQKQDLKKLRQMVDY-CHTEDCLQRFILKYFGE-VDPAACGQCGNCTD-TRQA 404
Query: 686 KNLKEEANILMQVIAAYNEQ 705
++ +EA +++ + NE+
Sbjct: 405 HDVTKEAQMVLSCMIRMNER 424
>gi|194291033|ref|YP_002006940.1| ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG 19424]
gi|193224868|emb|CAQ70879.1| ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG 19424]
Length = 615
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 130/220 (59%), Gaps = 21/220 (9%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVV 218
++LK FG+ + + Q E + DCLVL TG GKSLC+QIPALL + V +V
Sbjct: 6 AILKDVFGYHAFRGRQAEIIDHVATGGDCLVLMPTGGGKSLCYQIPALLRQRAGDGVGIV 65
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLI 275
+SPLI+LM DQ + L++ GV A L S G + VE+ L G I+YV PE RL+
Sbjct: 66 VSPLIALMQDQVAALTEAGVRAAVLNSTLTGAEASAVERDLLAGRIEILYVAPE---RLM 122
Query: 276 KP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
P L E + LFAIDE HCVS+WGHDFRP+Y +LSVL E F +P +
Sbjct: 123 TPRFLDLLERTRVGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPY---------VPRI 173
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA R++I++ L + F+ +SF RPN+R+ +
Sbjct: 174 ALTATADALTRDEIVERLALHDARIFI-SSFDRPNIRYRI 212
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 109/191 (57%), Gaps = 14/191 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH-TEFHENKLEVVVATIAFGM 574
I+Y +RK+ A++L G G+ A AY+A + +Q+R+ H F E + V+VATIAFGM
Sbjct: 241 IVYCLSRKKVEDTAQWLSGQGINALAYHAGM-DAQVRQHHQARFREEEGLVMVATIAFGM 299
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT 634
GIDK +VR + H P+S+E YYQE GRAGRDG A+ + L ++ +R D++
Sbjct: 300 GIDKPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGD---VVQQKRMIDES 356
Query: 635 K--QAYRMLS----DCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
+ +A++ +S D T+ CR + ++ YF E + E C CD C++ PP +
Sbjct: 357 EADEAFKRVSSSKLDALLGLCETAGCRRQRILAYFNE--ASEPCGNCDTCLE-PPATWDG 413
Query: 689 KEEANILMQVI 699
EA + + +
Sbjct: 414 TREAQMALSCV 424
>gi|429770486|ref|ZP_19302548.1| ATP-dependent DNA helicase RecQ [Brevundimonas diminuta 470-4]
gi|429184568|gb|EKY25581.1| ATP-dependent DNA helicase RecQ [Brevundimonas diminuta 470-4]
Length = 622
Score = 165 bits (418), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 98/247 (39%), Positives = 136/247 (55%), Gaps = 17/247 (6%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ LL++ +GH+ + Q + + LA D + + TG GKS+C+Q+PA+L V +V+
Sbjct: 16 EARKLLERVWGHADFRGLQADVIQEVLAGRDVMAVLPTGGGKSVCYQVPAILRPGVGLVV 75
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ L + GV A L SG + V + A G ++YV PE +
Sbjct: 76 SPLIALMTDQVEALKQQGVAAARLDSGLTMDERSAVWRAARAGELDLLYVSPEGLASGAM 135
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L RLAE I+L AIDE HCVS+WGHDFRPDYR L L E F P +A+
Sbjct: 136 -LDRLAEL-PISLIAIDEAHCVSQWGHDFRPDYRTLGRLAEIFPGT---------PRIAV 184
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIY 396
TATA + R+DIL SL + + FV SF RPNL+ S + SRA +L +
Sbjct: 185 TATADARTRDDILASLRLGEARVFV-DSFARPNLQLSAERKVNGSRARTDAAVIEL--VR 241
Query: 397 TKKKKTG 403
++ K+G
Sbjct: 242 ERRGKSG 248
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 91/171 (53%), Gaps = 6/171 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
++Y +R +A L G A AY+A + R F V+VATIAFGMG
Sbjct: 249 VVYCGSRDGCERVADALRDAGSNAIAYHAGFDARERDRRLERFLAEDGAVMVATIAFGMG 308
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV-LY--ANLSSMPTLLPSRRSED 632
+DK +VR +IH P SLEAY+QE GRAGRDG A+ + LY ++++ L R +
Sbjct: 309 VDKPDVRFVIHADPPGSLEAYWQEIGRAGRDGEPAEGITLYGPSDIAWSLRRLEGRPMAE 368
Query: 633 QTKQAY-RMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
+ KQ R + F ++ + CR + + YFGE + C +CD+C D P
Sbjct: 369 EVKQVQTRKVRQLFAM-LDGATCRPQAVRRYFGEQ-DAQPCGVCDICGDPP 417
>gi|330844596|ref|XP_003294206.1| hypothetical protein DICPUDRAFT_159167 [Dictyostelium purpureum]
gi|325075373|gb|EGC29269.1| hypothetical protein DICPUDRAFT_159167 [Dictyostelium purpureum]
Length = 849
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 116/191 (60%), Gaps = 10/191 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LKK+FG ++ + Q E + L +D V ATG GKSLC+Q+P+LL K VISPL S
Sbjct: 20 LKKYFGLTTFRPKQLEIIKHTLKGYDSFVSIATGGGKSLCYQLPSLLLKKTTFVISPLKS 79
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVE-QKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
L+ DQ KL G+ A L S D+ E +G+Y I+++ PE ++ + + +L E
Sbjct: 80 LISDQTIKLRSLGIKAIKLSSDIKDSSKEYNDIFKGLYRIVFITPERLVNEVMSINKLVE 139
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ G+ LFA+DE HCVS+WG DFRP YRRL +LR F ++P MALTAT+T +
Sbjct: 140 NNGVCLFAVDECHCVSQWGTDFRPSYRRLDILRNMFP---------NVPTMALTATSTTE 190
Query: 344 VREDILKSLHM 354
V DI++ L +
Sbjct: 191 VENDIIEVLQL 201
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 103/192 (53%), Gaps = 7/192 (3%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
TIIY PT + ++ + +YL + + Y++ + Q +V +F NK EVV ATIAFGM
Sbjct: 253 TIIYCPTIQTSIDLNQYLQANKILSNCYHSQMSDPQREQVLKQFLFNKTEVVCATIAFGM 312
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP--TLLPSRRSED 632
GIDK ++R IIHYG +S+E YYQE+GRAGRDG + +++ +L +L +
Sbjct: 313 GIDKHDIRVIIHYGPSKSVEEYYQESGRAGRDGLPSLSLVFFSLQDFTKGSLRINFGGNH 372
Query: 633 QTK-QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS--HEKCQLCDVCVD--GPPEMKN 687
QTK L+ +N + CR K ++ F E +S C CD C + +
Sbjct: 373 QTKSNKIDKLTQLKNIMVNRTECRRKAILSVFNEQYSVPPNGCGGCDNCTEEKDTSNLLE 432
Query: 688 LKEEANILMQVI 699
L E+ IL+ I
Sbjct: 433 LTHESRILINCI 444
>gi|410639269|ref|ZP_11349819.1| ATP-dependent DNA helicase RecQ [Glaciecola chathamensis S18K6]
gi|410648965|ref|ZP_11359360.1| ATP-dependent DNA helicase RecQ [Glaciecola agarilytica NO2]
gi|410131472|dbj|GAC07759.1| ATP-dependent DNA helicase RecQ [Glaciecola agarilytica NO2]
gi|410141191|dbj|GAC08006.1| ATP-dependent DNA helicase RecQ [Glaciecola chathamensis S18K6]
Length = 604
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 135/233 (57%), Gaps = 21/233 (9%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
++LK FG+ + ++ Q+E + L D LVL TG GKSLC+QIPAL+ + +VISP
Sbjct: 15 QNVLKNVFGYDAFRDGQREVIEQILQGKDVLVLMPTGGGKSLCYQIPALVLDGLTIVISP 74
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGM----YSIIYVCPETVIRLIKP 277
LI+LM DQ L GV+A ++ S N+ RGM Y +IYV PE +++
Sbjct: 75 LIALMKDQVDALVASGVSAAYINSNL-SNEEMLNVYRGMQDGRYKLIYVAPERLMQF-DF 132
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
+QRL S +ALFA+DE HCVS WGHDFR +YR+L +++ F +P++ LT
Sbjct: 133 IQRL-HSLNVALFAVDEAHCVSHWGHDFRKEYRQLGQIKQQFPG---------VPVVGLT 182
Query: 338 ATATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFS--VKHSKTSSRASYKK 387
ATA I R DIL+ L + + FV SF RPN+R++ K+ T Y K
Sbjct: 183 ATADITTRSDILQQLALEQ--PFVFKGSFDRPNIRYNQLFKYKATDQVIQYVK 233
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+DG IIY +RK+ ++ L G+ A Y+A L ++ +F ++ ++++VAT+
Sbjct: 235 QDGSGIIYCNSRKKVDDLSIALAKQGINCAGYHAGLEGPIRDKIQRDFIQDNVDIIVATV 294
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL----- 625
AFGMGI+K NVR ++H+ P+S+EAYYQE GRAGRDG A+ +L + +
Sbjct: 295 AFGMGINKSNVRFVVHFDLPRSVEAYYQETGRAGRDGMPAEALLLFDEKDAARIRQWIGM 354
Query: 626 ---PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
P+R + K A CR ++L+ YF E +S E C CD+C+D P
Sbjct: 355 GDNPARLDIELQKFAAMEAF------AEAQTCRRQVLLNYFSE-YSAEDCGNCDICLD-P 406
Query: 683 PEMKNLKEEANILMQVI 699
P+ + K A +++ I
Sbjct: 407 PKRFDGKVSAQMVLSCI 423
>gi|85858064|ref|YP_460266.1| superfamily II DNA helicase [Syntrophus aciditrophicus SB]
gi|85721155|gb|ABC76098.1| superfamily II DNA helicase [Syntrophus aciditrophicus SB]
Length = 619
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 134/240 (55%), Gaps = 23/240 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LKK FG+ + + Q+E + + D VL TG GKSLC+Q+PAL V +V+SPLIS
Sbjct: 9 LKKIFGYDAFRLHQQEIVDGLIRGEDAFVLMPTGGGKSLCYQLPALHRPGVGIVVSPLIS 68
Query: 225 LMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +GV A F SG KV + G +IY+ PE ++ + L+RL
Sbjct: 69 LMKDQVDSLKAYGVKAAFYNSSLSGTEARKVLARLHGGKLDLIYIAPERLMSR-EFLERL 127
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+ IALFAIDE HC+S+WGHDFRP+YR+L LR F +IPL+ALTATA
Sbjct: 128 NDI-PIALFAIDEAHCISQWGHDFRPEYRQLGRLRGLFP---------EIPLIALTATAE 177
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKK 401
R DIL+ L + + ++ + F RPN+R++V +K F QL + K
Sbjct: 178 AHTRRDILERLGLRQARSYI-SGFDRPNIRYTVLEK--------RKPFAQLTTFLQPRYK 228
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 148/274 (54%), Gaps = 15/274 (5%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP +L+ +P G I+Y +R+ +A L G +AA Y+A LP ++V +
Sbjct: 214 KPFAQLTTFLQPRYKGTGIVYCLSRQRVEKVAGALTEAGFQAAPYHAGLPAGARKQVQED 273
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL--- 614
F + + ++VAT+AFGMGIDK N+R ++HY P+++E+YYQE GRAGRDG A+ +L
Sbjct: 274 FLRDDIRIIVATVAFGMGIDKSNIRWVVHYDIPKNIESYYQETGRAGRDGLPAEALLLFG 333
Query: 615 YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL 674
Y ++S L+ + ++ ++ + L+ Y S CR +IL+ YFGE + E C
Sbjct: 334 YGDISLARGLIENSKNPERRRIELHKLNAMVGYAEALS-CRRRILLGYFGESLA-EDCGN 391
Query: 675 CDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFV 734
CD+C++ PP + ++ E++ + + Q M + G +K++ ++ + ++
Sbjct: 392 CDICLN-PPRLVDVTEDSRKALSCVYRVG-QRFGMGHVIDVLRGSQKERVLELHHDRLST 449
Query: 735 SKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
I R +SQ+Y W L + + G++ +
Sbjct: 450 YGIGRNRSQEY-------WGSLLHHLVHNGFLEQ 476
>gi|449517902|ref|XP_004165983.1| PREDICTED: ATP-dependent DNA helicase Q-like 1-like [Cucumis
sativus]
Length = 601
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 127/214 (59%), Gaps = 18/214 (8%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG+ + + Q EA A + DC +L TG GKSLC+Q+PA + V VVISPL+SL+ D
Sbjct: 196 FGNKAFRPLQHEACKAAASKQDCFILMPTGGGKSLCYQLPATVQPGVTVVISPLLSLIQD 255
Query: 229 QCSKLS-KHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETVI--RLIKPLQR 280
Q L+ K G+ + FL S Q ++ E + + ++YV PE + ++ L+
Sbjct: 256 QIVTLNLKFGIPSTFLNSQQTSSQAAVVLQELRQDKPSCKLLYVTPERIATQSFLEILRF 315
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
+ + +A F +DE HCVS+WGHDFRPDYR L L++NF D+P+MALTATA
Sbjct: 316 MHMKKQLASFVVDEAHCVSQWGHDFRPDYRNLGCLKQNFP---------DVPVMALTATA 366
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
T VRED+LK+L + + SF RPNL++ V
Sbjct: 367 THSVREDVLKALRIPHAL-ILERSFDRPNLKYEV 399
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 117/212 (55%), Gaps = 20/212 (9%)
Query: 487 DRSFERTDL-------LNKPAERL-SMLQEPLEDGLTIIYVPTRKETLSIAKYLCG-FGV 537
+RSF+R +L +P +L ++E ++ I+Y ++ E + +++ L F +
Sbjct: 387 ERSFDRPNLKYEVVCKTKEPLVQLGQFIKERFKNQCGIVYCLSKSECVEVSETLNKKFKI 446
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
KAA Y+A L Q V ++H +++V ATIAFGMGIDK +VR +IH +S+E+YY
Sbjct: 447 KAAYYHAGLAARQRVLVQKKWHVGDIQIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYY 506
Query: 598 QEAGRAGRDGHLADC-VLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSC--- 653
QE+GRAGRDG+ A C VLY + R ++ ++++M S M C
Sbjct: 507 QESGRAGRDGYPASCIVLYQKKDFSRVVCMLRNAQGFKSESFKM-SMSQGKKMQQFCELK 565
Query: 654 --CRAKILVEYFGEDFSHEKCQL----CDVCV 679
CR ++L+++FGE F + C+ CD C+
Sbjct: 566 DQCRRQMLLQHFGESFDRKACKYGSNPCDNCL 597
>gi|253999232|ref|YP_003051295.1| ATP-dependent DNA helicase RecQ [Methylovorus glucosetrophus
SIP3-4]
gi|253985911|gb|ACT50768.1| ATP-dependent DNA helicase RecQ [Methylovorus glucosetrophus
SIP3-4]
Length = 609
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 132/219 (60%), Gaps = 15/219 (6%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+L+ FG++ + Q++ + D LVL TG GKSLC+QIPALL + +V+S
Sbjct: 6 AQEVLESIFGYNQFRGPQQDVVEHLAQGGDALVLMPTGGGKSLCYQIPALLRPGLAIVVS 65
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSG-QPDN--KVEQKALRGMYSIIYVCPE--TVIRLI 275
PLI+LM +Q L + GV A FL S Q D +++Q+ L G I+YV PE + +
Sbjct: 66 PLIALMQNQVEALQQLGVEAAFLNSSLQADEAYQLQQRILSGDIKILYVAPERLMLSSFL 125
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L + G+ALFAIDE HCVS+WGHDFRP+YR+L++L E F D+P +A
Sbjct: 126 SLLDEVQAHIGLALFAIDEAHCVSQWGHDFRPEYRQLTILHERFP---------DVPRVA 176
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA R +I++ L++ +F+ +SF RPN+R+ +
Sbjct: 177 LTATADAPTRAEIIERLNLEHARQFI-SSFDRPNIRYRI 214
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 98/187 (52%), Gaps = 5/187 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A +L G A Y+A L + + +F + ++VATIAFGMG
Sbjct: 238 IVYCLSRRKVDETAAWLQSRGWNALPYHAGLDAATREKHQRQFLREEGIIMVATIAFGMG 297
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS---SMPTLLPSRRSED 632
IDK NVR + H P+S+E+YYQE GRAGRDG A+ + L SM +L S + +
Sbjct: 298 IDKPNVRFVAHLDLPKSMESYYQETGRAGRDGLQANAWMAYGLGDVVSMRQMLDSGDAPE 357
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ K+ R D + CR + ++ YFGE + C CD C+ PP+ N E A
Sbjct: 358 ERKRVERQKLDALLGFCEATGCRHQGILRYFGEAHPGD-CAQCDNCLT-PPDTWNATEAA 415
Query: 693 NILMQVI 699
+ + +
Sbjct: 416 RMALSCV 422
>gi|334131083|ref|ZP_08504849.1| ATP-dependent DNA helicase RecQ [Methyloversatilis universalis
FAM5]
gi|333443713|gb|EGK71674.1| ATP-dependent DNA helicase RecQ [Methyloversatilis universalis
FAM5]
Length = 601
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 131/216 (60%), Gaps = 19/216 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK+ FGH+ + Q + + + D LVL TG GKSLC+Q+PALL VV+SPLI
Sbjct: 8 VLKEVFGHAGFRGAQADIVQHVASGGDALVLMPTGGGKSLCYQVPALLRSGTAVVVSPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKP--L 278
+LM DQ + +++ GV A FL S ++ VE+ L G ++YV PE RL P L
Sbjct: 68 ALMQDQVAAMTQLGVRAAFLNSTLDLDQVREVERSLLDGTLDLLYVAPE---RLNTPRCL 124
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L+ R ALFAIDE HCV++WGHDFRP+Y +LSVL E F D+P +ALTA
Sbjct: 125 DLLSHIRP-ALFAIDEAHCVAQWGHDFRPEYLQLSVLHERFP---------DVPRIALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA R++I+ L + FV +SF RPN+R+++
Sbjct: 175 TADPATRDEIIDRLALHDARVFV-SSFDRPNIRYTI 209
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 111/208 (53%), Gaps = 17/208 (8%)
Query: 487 DRSFERTDLLNKPAERLSMLQ----EPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
DR R +++K R +L+ E ED I+Y +RK+ A++L G+KA Y
Sbjct: 201 DRPNIRYTIVDKDDARKQLLRFIRTEHPEDA-GIVYCLSRKKVDETAEWLVAQGLKALPY 259
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A + + F + +VVATIAFGMGIDK +VR + H P+S+E YYQE GR
Sbjct: 260 HAGMDAATRAAHQARFQREEGLIVVATIAFGMGIDKPDVRFVAHLDLPRSIEGYYQETGR 319
Query: 603 AGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK--QAYRMLS----DCFRYGMNTSCCRA 656
AGRDG AD + L+ + + RR DQ++ +A+R +S D T+ CR
Sbjct: 320 AGRDGGAADAWMAYGLADV---VQQRRFIDQSEGSEAFRRISGSKLDALLGLCETAQCRR 376
Query: 657 KILVEYFGEDFSHEKCQLCDVCVDGPPE 684
L+ YFGE+ C CD C++ PPE
Sbjct: 377 VHLLAYFGEEGV--PCGNCDNCLN-PPE 401
>gi|309782826|ref|ZP_07677546.1| ATP-dependent DNA helicase RecQ [Ralstonia sp. 5_7_47FAA]
gi|404397522|ref|ZP_10989312.1| ATP-dependent DNA helicase RecQ [Ralstonia sp. 5_2_56FAA]
gi|308918250|gb|EFP63927.1| ATP-dependent DNA helicase RecQ [Ralstonia sp. 5_7_47FAA]
gi|348612707|gb|EGY62321.1| ATP-dependent DNA helicase RecQ [Ralstonia sp. 5_2_56FAA]
Length = 637
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 135/228 (59%), Gaps = 23/228 (10%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK- 214
D +++L FG+S+ + Q E ++ DCLVL TG GKSLC+QIPAL+ +
Sbjct: 17 DTAAATHAVLHDVFGYSAFRGPQAEIVAHVADGGDCLVLMPTGGGKSLCYQIPALVRHRR 76
Query: 215 ---VVVVISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCP 268
+V+SPLI+LM DQ + L + GV A +L S G +VE+ G ++YV P
Sbjct: 77 GQGAGIVVSPLIALMQDQVAALEEAGVRAAYLNSALTGAEAAQVERDLAAGRLDLVYVAP 136
Query: 269 ETVIRLIKP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
E RL+ P L L SR I LFAIDE HCVS+WGHDFRP+Y +LSVL E F
Sbjct: 137 E---RLMTPRFLDLLERSR-IGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP------ 186
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P +ALTATA R++I++ L ++ F L+SF RPN+R+++
Sbjct: 187 ---HVPRIALTATADAVTRDEIVERLALTDARVF-LSSFDRPNIRYTI 230
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 117/242 (48%), Gaps = 35/242 (14%)
Query: 489 SFERTDLLNKPAERLSMLQEPLE-------DGLT----IIYVPTRKETLSIAKYLCGFGV 537
SF+R ++ E+ S Q+ L DG T I+Y +RK+ A++L G+
Sbjct: 220 SFDRPNIRYTIVEKDSARQQLLRFIRAEHMDGDTCDAGIVYCLSRKKVEETAQWLAEQGI 279
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
+A Y+A + R F + + V+VATIAFGMGIDK +VR + H P+SLE YY
Sbjct: 280 RALPYHAGMDSDVRARHQAIFRKEEGVVMVATIAFGMGIDKPDVRFVAHLDLPKSLEGYY 339
Query: 598 QEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQ-----------TKQAYRMLSDCFR 646
QE GRAGRDG A+ + L+ ++ RR D+ T + +L C
Sbjct: 340 QETGRAGRDGLPANAWMAYGLAD---VVQQRRMIDESDADDVHKRVSTAKLEALLGLC-- 394
Query: 647 YGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQS 706
+ CR L+ YFGE S + C CD C+ PP+ + EA M + AY Q
Sbjct: 395 ---EAATCRRVALLAYFGE--SSQPCGNCDTCLT-PPQTWDATREAQ--MALSCAYRVQQ 446
Query: 707 NS 708
S
Sbjct: 447 AS 448
>gi|392556563|ref|ZP_10303700.1| ATP-dependent DNA helicase [Pseudoalteromonas undina NCIMB 2128]
Length = 607
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 137/220 (62%), Gaps = 17/220 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K ++LK+ FG+S ++ Q + A + D LVL TG GKS+C+QIPAL+ V +VI
Sbjct: 14 KPETVLKQVFGYSEFRDGQSAVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVI 73
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ ++L GV A ++ + + V Q+ +G+ ++YV PE V++ +
Sbjct: 74 SPLISLMQDQVTQLQALGVKAAYINNSLAREEQQLVYQQLHQGLIKLLYVAPEKVLQR-E 132
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L+RL+ ++LFAIDE HCVS WGHDFRP Y RL+ L++ F +P+MAL
Sbjct: 133 FLERLSHL-NVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFT---------HVPMMAL 182
Query: 337 TATATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSVK 375
TATA R DI++ L + + ++ T SF RPN+R++++
Sbjct: 183 TATADKATRFDIVEQLKLQQ--PYIHTGSFDRPNIRYTIE 220
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 101/176 (57%), Gaps = 17/176 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK IA+ L G+ AAAY+A + Q + V T F + +++VVAT+AFGMG
Sbjct: 242 IIYCTSRKRVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMG 301
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPS----- 627
I+K NVR ++HY P+S+EAYYQE GRAGRDG A+ ++Y A++ +
Sbjct: 302 INKPNVRFVLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQ 361
Query: 628 -RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
RR E+Q A ++ CR +IL+ YF E + E C CD+C++ P
Sbjct: 362 RRRVEEQRFNAMASFAEA-------QTCRRQILLNYFSE-YQREPCGNCDICLNPP 409
>gi|281209297|gb|EFA83470.1| hypothetical protein PPL_03618 [Polysphondylium pallidum PN500]
Length = 307
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 152/266 (57%), Gaps = 31/266 (11%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEAL-SAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
E ++N +LKK+FG +S + Q++ + S+ + D V ATG+GKSLCFQ+P L+ K
Sbjct: 4 EERINKILKKYFGFNSFRENQRDIITSSVIQGRDVYVSMATGAGKSLCFQMPPLVLRKTA 63
Query: 217 VVISPLISLMHDQCSKLSKH------------------GVTACFLGSG-QPDNKVEQKAL 257
++ISPLIS+M DQ KLS + G+ C +G Q ++++ QK +
Sbjct: 64 IIISPLISIMEDQLLKLSSYVMLCLEILVNHHHHLIRLGIKVCHYSAGTQTNSEIHQKVI 123
Query: 258 RGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRE 317
G Y +IY+ PE + + +Q L ES + LF IDEVHC+S WGHDFR D+R L LR+
Sbjct: 124 GGYYRLIYMSPEKAMTSLDMIQELYESDTLCLFGIDEVHCLSHWGHDFRRDFRDLHRLRQ 183
Query: 318 NFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHS 377
L D+P+MALTAT+T ++++D+ + L + + F +S RPN+ + +
Sbjct: 184 ---------LCPDVPVMALTATSTCEIQKDVCELLKLRETAVFE-SSRNRPNIFYKTIY- 232
Query: 378 KTSSRASYKKDFCQLIDIYTKKKKTG 403
K+S KDF ++I + + K+
Sbjct: 233 KSSGSNGQTKDFKRIIKVINEVTKSN 258
>gi|219121078|ref|XP_002185770.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582619|gb|ACI65240.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 449
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/248 (43%), Positives = 135/248 (54%), Gaps = 33/248 (13%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+ +FG+ + + Q + L D V ATGSGKSL +QIPAL T V +V+SPLIS
Sbjct: 6 LQDYFGYPAFRPGQFPVIEVVLQGRDAAVFWATGSGKSLNYQIPALHTDTVAIVVSPLIS 65
Query: 225 LMHDQCSKL------SKHGV---TACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI--R 273
LM DQ KL S G A FLGS Q D E KALRG Y++IYV PE ++
Sbjct: 66 LMQDQTHKLNFLSASSASGTQKPVATFLGSSQTDPDEEAKALRGEYNLIYVTPEKLVTSE 125
Query: 274 LIKPLQRL-AESRGIALFAIDEVHCVSKWGHDFRPDYRRLS-------VLRENFGANNLK 325
++ L++L + + I L AIDE HCVS+WGHDFRP +R + VLR+
Sbjct: 126 FLQALEKLHKDYKPIRLIAIDESHCVSEWGHDFRPSFRSVGPSLRTHDVLRQ-------- 177
Query: 326 SLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASY 385
IPL+ALTATA +V+EDIL SL M + V SF R NL VK T S
Sbjct: 178 -----IPLLALTATAVPRVQEDILTSLQM-ENPLVVRQSFDRTNLEIIVKPKSTGGTGSI 231
Query: 386 KKDFCQLI 393
F L+
Sbjct: 232 PSAFQSLL 239
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 124/246 (50%), Gaps = 32/246 (13%)
Query: 488 RSFERTDL--LNKPAER------LSMLQEPLEDGLTIIYVPTRKETLSIAKYL---CGFG 536
+SF+RT+L + KP S Q L D TI+Y PTR + +IA YL
Sbjct: 209 QSFDRTNLEIIVKPKSTGGTGSIPSAFQSLLAD--TIVYAPTRSQVDNIASYLQTHAPSN 266
Query: 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAY 596
V+ AY+A + H F V+VAT+AFGMGI K + RR+IH+G P++LE Y
Sbjct: 267 VRIEAYHAGMNAEDRTTAHRNFLTGVTTVIVATVAFGMGIGKPDTRRVIHFGPPKTLEEY 326
Query: 597 YQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSED--------QTKQA-YRMLSDCFRY 647
YQ+ GRAGRDG A C+LY S + R D + K+A + R+
Sbjct: 327 YQQIGRAGRDGLPATCILYVASSDL-----DRYQSDFYLGGLHGKAKEATLESMEAMKRF 381
Query: 648 GMNTSCCRAKILVEYFGEDFSH-EKCQLCDVCVD----GPPEMKNLKEEANILMQVIAAY 702
++ CR K L+ YF E+ + ++C CDVC G ++ EA I++ + A
Sbjct: 382 SLDAETCRRKQLLLYFNEEPAFGDRCGTCDVCKSVEKYGDDAQRDFGGEARIVLHAVDAL 441
Query: 703 NEQSNS 708
N+QS S
Sbjct: 442 NQQSMS 447
>gi|359446850|ref|ZP_09236489.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20439]
gi|358039322|dbj|GAA72738.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20439]
Length = 607
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 137/220 (62%), Gaps = 17/220 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K ++LK+ FG+S ++ Q + A + D LVL TG GKS+C+QIPAL+ V +VI
Sbjct: 14 KPETVLKQVFGYSEFRDGQSAVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVI 73
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ ++L GV A ++ + + V Q+ +G+ ++YV PE V++ +
Sbjct: 74 SPLISLMQDQVTQLQALGVKAAYINNSLAREEQQLVYQQLHQGLIKLLYVAPEKVLQR-E 132
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L+RL+ ++LFAIDE HCVS WGHDFRP Y RL+ L++ F +P+MAL
Sbjct: 133 FLERLSHL-NVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFT---------HVPMMAL 182
Query: 337 TATATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSVK 375
TATA R DI++ L + + ++ T SF RPN+R++++
Sbjct: 183 TATADKATRFDIVEQLKLQQ--PYIHTGSFDRPNIRYTIE 220
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 101/176 (57%), Gaps = 17/176 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK IA+ L G+ AAAY+A + Q + V T F + +++VVAT+AFGMG
Sbjct: 242 IIYCTSRKRVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMG 301
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPS----- 627
I+K NVR ++HY P+S+EAYYQE GRAGRDG A+ ++Y A++ +
Sbjct: 302 INKPNVRFVLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQ 361
Query: 628 -RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
RR E+Q A ++ CR +IL+ YF E + E C CD+C++ P
Sbjct: 362 RRRVEEQRFNAMASFAEA-------QTCRRQILLNYFSE-YQREPCGNCDICLNPP 409
>gi|68249329|ref|YP_248441.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae 86-028NP]
gi|229844599|ref|ZP_04464738.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae 6P18H1]
gi|68057528|gb|AAX87781.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae 86-028NP]
gi|229812313|gb|EEP48003.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae 6P18H1]
Length = 619
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK FG+ S + Q+E ++A L D LV+ ATG+GKSLC+QIPAL + +VISPL
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A FL S Q +V+ K + G ++YV PE V +
Sbjct: 78 ISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKV--MTNSFF 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L + AIDE HC+S+WGHDFRP+Y +L L+ +F D P+MALTAT
Sbjct: 136 QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFP---------DAPIMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A ++DIL+ L++ K++ SF RPN+R++++
Sbjct: 187 ADYATQKDILRHLNLKNLHKYI-GSFDRPNIRYTLE 221
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 145/280 (51%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + IIY +R + IA+ L GV AAAY+A + + RV +
Sbjct: 225 KPMEQLTRFVLAQKGKSGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQD 284
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 285 FQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 344
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + + +L P R+ E +A ++ + CR +L+ YFGE
Sbjct: 345 PADYAWLQKILFEKPETPQRQIEQHKLEAIGEFAE-------SQTCRRLVLLNYFGEH-R 396
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
C CD+C+D P + L + ++ + Q + G+ QK ++R
Sbjct: 397 QTPCNNCDICLDPPKKYDGLVDAQKVMSTIYRV--GQCFGAHYVIAVLRGMHNQKIIERQ 454
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ K+ V I +++S+++ W+ + R + + G++++
Sbjct: 455 HHKLSVYGIGKDKSKEH-------WQSVIRQLIHLGFVQQ 487
>gi|406933324|gb|EKD68008.1| hypothetical protein ACD_48C00110G0001, partial [uncultured
bacterium]
Length = 334
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 126/218 (57%), Gaps = 17/218 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK FG S + Q+E + A + D LVL TG GKSLC+Q+PA + + VV+SPLI+
Sbjct: 10 LKHTFGFDSFRPMQEEIVQAVIEKKDVLVLMPTGGGKSLCYQLPATVQDGLTVVVSPLIA 69
Query: 225 LMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKP-LQR 280
LM DQ L +G+ A FL S + ++ RG I+YV PE +LI P Q
Sbjct: 70 LMKDQVEGLVANGIKAAFLNSSLELDEHQDIREQLERGDIDILYVSPE---KLITPNFQY 126
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
+ + LFAIDE HC+S+WGHDFRP Y +L L+E+F DIP++ALTATA
Sbjct: 127 SLKKWNVQLFAIDEAHCISQWGHDFRPGYTQLRTLKESFP---------DIPIIALTATA 177
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
R+DIL L + K K ++SF RPNL +V +K
Sbjct: 178 DKTTRKDILAQLKL-KDPKVFISSFDRPNLALNVLPAK 214
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 78/133 (58%), Gaps = 6/133 (4%)
Query: 489 SFERTDL-LN-----KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R +L LN K ER+ + + IIY +R +T +A L G+ A Y
Sbjct: 200 SFDRPNLALNVLPAKKRIERIITFVKKRKHESGIIYCLSRNQTEKVATALIQEGINAGYY 259
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A + + + +F + +VVAT+AFGMGIDK NVR +IH+ P++LE YYQE GR
Sbjct: 260 HAGMQSHERAKAQDDFIHGRTNIVVATVAFGMGIDKSNVRYVIHHNLPKNLEGYYQEIGR 319
Query: 603 AGRDGHLADCVLY 615
AGRDG ++ +L+
Sbjct: 320 AGRDGLPSETLLF 332
>gi|373467701|ref|ZP_09558994.1| ATP-dependent DNA helicase RecQ [Haemophilus sp. oral taxon 851
str. F0397]
gi|371758043|gb|EHO46820.1| ATP-dependent DNA helicase RecQ [Haemophilus sp. oral taxon 851
str. F0397]
Length = 619
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 131/216 (60%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK FG+ S + Q+E ++A L D LV+ ATG+GKSLC+QIPAL + +VISPL
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFAGLTLVISPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A FL S Q +V+ K + G ++YV PE V +
Sbjct: 78 ISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKV--MTNSFF 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L ++ AIDE HC+S+WGHDFRP+Y +L L+ +F P+MALTAT
Sbjct: 136 QLISYSKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFP---------HAPIMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A R+DIL L++ +++ SF RPN+R++++
Sbjct: 187 ADYATRQDILTHLNLENPHRYI-GSFDRPNIRYTLE 221
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 155/305 (50%), Gaps = 36/305 (11%)
Query: 479 SPHRDRDTDRSFERTDLLN------KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYL 532
+PHR SF+R ++ KP E+L+ + IIY +R + IA+ L
Sbjct: 203 NPHR---YIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQKGKSGIIYCNSRNKVERIAESL 259
Query: 533 CGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQS 592
GV AAAY+A + + RV +F + ++VVVATIAFGMGI+K NVR + H+ P+S
Sbjct: 260 RNKGVSAAAYHAGMETALRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRS 319
Query: 593 LEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLL------PSRRSEDQTKQAYRMLSD 643
+E+YYQE GRAGRD A+ VL+ A+ + + +L P R+ E +A ++
Sbjct: 320 IESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAE 379
Query: 644 CFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYN 703
+ CR +L+ YFGE C CD+C+D P + L + ++ +
Sbjct: 380 -------SQTCRRLVLLNYFGEH-RQTPCNNCDICLDPPKKYDGLVDAQKVMSTIYRV-- 429
Query: 704 EQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENK 762
Q + G+ QK ++R + K+ V I +++S+++ W+ + R + +
Sbjct: 430 GQCFGAHYVIAVLRGMHNQKIIERQHDKLSVYGIGKDKSKEH-------WQSVIRQLIHL 482
Query: 763 GYIRE 767
G++++
Sbjct: 483 GFVQQ 487
>gi|294626842|ref|ZP_06705434.1| DNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292598856|gb|EFF43001.1| DNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
Length = 598
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 128/216 (59%), Gaps = 15/216 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ LL + FG+ + Q+ + A +D LVL TG GKSLC+Q+PALL + +V+SP
Sbjct: 6 HELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIGIVVSP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ L + GV A FL S + +VE+ L G ++YV PE + L +
Sbjct: 66 LIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERL--LTQRF 123
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + IP MALTA
Sbjct: 124 LSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HIPRMALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA + +I + L + FV +SF RPN+R++V
Sbjct: 175 TADPPTQREIAERLDLVDVRHFV-SSFDRPNIRYTV 209
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A+ LC G A Y+A LP F ++ ATIAFGMG
Sbjct: 232 IVYAMSRRKVEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
IDK +VR + H P+SLE YYQE GRAGRDG A+ C ++ + ++ + +
Sbjct: 292 IDKPDVRFVAHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDVVLLKQMIEQGEAAE 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ K+ R D + CR ++L+ FGE + + C CD C+
Sbjct: 352 ERKRLERAKLDHLLGYCESMQCRRQVLLAGFGETYP-KPCGNCDNCL 397
>gi|163751804|ref|ZP_02159020.1| ATP-dependent DNA helicase RecQ [Shewanella benthica KT99]
gi|161328289|gb|EDP99450.1| ATP-dependent DNA helicase RecQ [Shewanella benthica KT99]
Length = 610
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 135/220 (61%), Gaps = 22/220 (10%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
++S L+ FG+ + + Q+E + A DCLV+ TG GKSLC+Q+PAL + +V+S
Sbjct: 15 LSSSLQSVFGYRTFRKGQREVIEQICAGIDCLVIMPTGGGKSLCYQLPALQMPGLTIVVS 74
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS----IIYVCPETVIRLIK 276
PLISLM DQ L + GV A +L S Q + + LR M+S ++YV PE RL++
Sbjct: 75 PLISLMKDQVDSLQQMGVNAGYLNSSQAGEE-RARILREMHSGELKLLYVSPE---RLLQ 130
Query: 277 P--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
++RL E I+LFAIDE HC+S+WGHDFRP+Y L LR+ F +P+M
Sbjct: 131 ASFIERLHELH-ISLFAIDEAHCISQWGHDFRPEYAALGRLRQYFP---------HVPIM 180
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA R+DI + L ++ + LTSF RPN+R++V
Sbjct: 181 ALTATADQATRQDICQRLTITPFS--FLTSFDRPNIRYTV 218
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 145/287 (50%), Gaps = 23/287 (8%)
Query: 489 SFERTDLLNKPAERLSMLQEPLEDGLT-------IIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ AE+L+ + L +T IIY +R+ +A+ L G A A
Sbjct: 208 SFDRPNIRYTVAEKLNAANQ-LRQFVTAQNGSSGIIYCGSRRRVDEVAERLRLQGHNADA 266
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A + + V F +++L++VVAT+AFGMGI+K NVR ++HY P+S+E+YYQE G
Sbjct: 267 YHAGRTQEERTDVQDRFLKDQLDIVVATVAFGMGINKSNVRYVVHYDIPKSVESYYQETG 326
Query: 602 RAGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG A+ ++ A++ + L+ Q + L+ + CR ++
Sbjct: 327 RAGRDGLDAEALMLFDPADIGRVRHLIEQSEPGPQQQVELHKLNTMAAFA-EAQTCRRQV 385
Query: 659 LVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSG 718
L+ YF E + E C CD+C+D P +++ +L + +Q ++ + G
Sbjct: 386 LLHYFDES-AEEPCGNCDICLDPPKRYNGIQDAQKVLSSIYRL--KQGFGINHLIEVLRG 442
Query: 719 IKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGY 764
K +DR + K+ I +++S +Y W + R + + G+
Sbjct: 443 SKAANVLDRGHDKLSTWGIGKDKSHEY-------WLSIIRQIIHLGF 482
>gi|121609320|ref|YP_997127.1| ATP-dependent DNA helicase RecQ [Verminephrobacter eiseniae EF01-2]
gi|121553960|gb|ABM58109.1| ATP-dependent DNA helicase RecQ [Verminephrobacter eiseniae EF01-2]
Length = 622
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 136/229 (59%), Gaps = 19/229 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVV 217
+S+L FG+ + Q+ + +A D LVL TG GKSLC+Q+PA++ + V +
Sbjct: 5 HSVLHDVFGYEQFRGPQQAIVEHVIAGGDALVLMPTGGGKSLCYQVPAIVRQQQGRGVGI 64
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETV--I 272
V+SPLI+LMHDQ L + GV A FL S Q + VE++ G +++Y PE +
Sbjct: 65 VVSPLIALMHDQVGALHEAGVDAAFLNSTQSFEQTLEVERQLQTGAITLLYAAPERLNTP 124
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
R + L L + R ++LFAIDE HCVS+WGHDFRP+YR L+VL + + +P
Sbjct: 125 RFLGLLDGLYQQRQLSLFAIDEAHCVSQWGHDFRPEYRALTVLHQRYPG---------VP 175
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
+ALTATA R DI++ L + + F+ +SF RPN+R+++ K ++
Sbjct: 176 RIALTATADALTRADIIERLQLEQARLFI-SSFDRPNIRYTIVEKKDAT 223
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 99/191 (51%), Gaps = 14/191 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
++Y +RK +A L G +A Y+A L ++LR+ + + F + ++VATIAFGM
Sbjct: 240 VVYCQSRKRVEELAATLSAAGHQALPYHAGL-DTRLRQFNQDRFLREEGIIMVATIAFGM 298
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT 634
GIDK +VR + H P+++E YYQE GRAGRDG AD + L+ + + RR D++
Sbjct: 299 GIDKPDVRFVAHVDMPKNIEGYYQETGRAGRDGLNADAWMAYGLNDV---VNQRRMIDES 355
Query: 635 ------KQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
KQ R D + CR L+ YFG+ + C CD C+ P + +
Sbjct: 356 PAGEEFKQVLRGKLDALLALAEATDCRRVRLLAYFGD--ASTPCGNCDNCLH-PAAVWDA 412
Query: 689 KEEANILMQVI 699
+ A L+ I
Sbjct: 413 TDAARKLLSTI 423
>gi|91204323|emb|CAJ71976.1| strongly similar to ATP-dependent DNA helicase [Candidatus Kuenenia
stuttgartiensis]
Length = 772
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 132/218 (60%), Gaps = 15/218 (6%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
++ S L+K+FG+S Q++ + L D VL TG GKSLC+Q+PALL + VVI
Sbjct: 58 RIYSALQKYFGYSKFYPLQEDIIRWVLEQKDLFVLMPTGGGKSLCYQLPALLFDGITVVI 117
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKA---LRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ L+++G++A F+ S +V + L G I+Y+ PE + + +
Sbjct: 118 SPLIALMKDQVDGLTENGISATFINSSVHAREVAARKRDLLEGKIKILYIAPER-LAMRE 176
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
LQ L E + ++LFAIDE HC+S+WGHDFRP+YR+L +LRE F P MAL
Sbjct: 177 FLQFLQELK-VSLFAIDESHCISEWGHDFRPEYRQLKMLREKFPKT---------PFMAL 226
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TATAT V++DI+ L ++ F SF R NL + +
Sbjct: 227 TATATPSVQKDIVTQLKLTDYKVFN-ASFNRKNLFYQI 263
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 130/259 (50%), Gaps = 12/259 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY RK S+A L G G +A Y+A L F +E++VATIAFGMG
Sbjct: 286 IIYCQGRKTVESLAGSLQGEGYRALPYHAGLSAEMRTENQERFIREDIEIIVATIAFGMG 345
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSED 632
IDK NVR +IHY P+S+E YYQE GRAGRDG +DC+L YA+ + + + E+
Sbjct: 346 IDKPNVRYVIHYDLPKSIEGYYQETGRAGRDGLKSDCILLFSYADKIKIEYFIHQKEDEN 405
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ + AY+ L Y + CR KIL++YFGE F+ C+ CD C++ P E + A
Sbjct: 406 EKQAAYQQLKALVSY-CEGNVCRRKILLDYFGEKFTTHNCENCDTCLN-PKEQFDGTVAA 463
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWW 752
L+ + E S M + G + QK + + + I ++ K W
Sbjct: 464 QKLLSCVYRVGE-SFGMHHVIDVLLGSQNQKILQNSHTALTTFGIGKEYSKS------QW 516
Query: 753 RGLARIMENKGYIREGDDR 771
+R + GY+ + DR
Sbjct: 517 LTFSRELIQLGYLAQEGDR 535
>gi|383859981|ref|XP_003705470.1| PREDICTED: Bloom syndrome protein homolog [Megachile rotundata]
Length = 1362
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ ++ FG S + Q +A++A + DC VL TG GKSLC+Q+PALL V +VISPL
Sbjct: 632 IFRQKFGLYSFRPNQLQAINAAMLGFDCFVLMPTGGGKSLCYQLPALLLPGVTIVISPLK 691
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A L D + E ++YV PE + +
Sbjct: 692 SLILDQVQKLTSLDIPAAHLSGTITDAQADAIYRELSKKDPALKLLYVTPEKISASQKFC 751
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L L E +A F IDE HCVS+WGHDFRPDY+RL +LREN+ + ++A
Sbjct: 752 NLLSSLYERGLLAKFVIDEAHCVSQWGHDFRPDYKRLKMLRENYTK---------VGMIA 802
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATAT +VR DIL L +++ K+ ++SF RPNLR+S+
Sbjct: 803 LTATATPRVRTDILHQLGLTR-PKWFMSSFNRPNLRYSI 840
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 103/191 (53%), Gaps = 17/191 (8%)
Query: 501 ERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE 560
E ++M++ ++ I+Y +RKE A + G+KA Y+A L + + +
Sbjct: 851 EVIAMIKTKYKNDCGIVYCLSRKECDDYAVQMRKNGIKALGYHAGLTDNNRSNIQGRWIS 910
Query: 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620
+++VV ATIAFGMGIDK NVR +IH P+S+E YYQE+GRAGRDG ADC+L+ N +
Sbjct: 911 EEIKVVCATIAFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAGRDGENADCILFYNYAD 970
Query: 621 MPTLLPSRRSEDQTKQA--------YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC 672
M + ++ A ++M+S C N + CR + + YFGE F ++C
Sbjct: 971 MHRIRKMIEMDNSNPDAIKTNIDNLFKMVSFC----ENKTDCRRSLQLNYFGEIFDRQQC 1026
Query: 673 -----QLCDVC 678
CD C
Sbjct: 1027 ISNKATSCDNC 1037
>gi|332304550|ref|YP_004432401.1| ATP-dependent DNA helicase RecQ [Glaciecola sp. 4H-3-7+YE-5]
gi|332171879|gb|AEE21133.1| ATP-dependent DNA helicase RecQ [Glaciecola sp. 4H-3-7+YE-5]
Length = 599
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/233 (40%), Positives = 136/233 (58%), Gaps = 21/233 (9%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
++LK FG+ + ++ Q+E + L D LVL TG GKSLC+QIPAL+ + +VISP
Sbjct: 10 QNVLKNVFGYDAFRDGQREVIEQILQGKDVLVLMPTGGGKSLCYQIPALVLEGLTIVISP 69
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGM----YSIIYVCPETVIRLIKP 277
LI+LM DQ L GV+A ++ S + ++ RGM Y +IYV PE +++
Sbjct: 70 LIALMKDQVDALVASGVSAAYINSNLSNEEM-LNVYRGMQDGRYKLIYVAPERLMQF-DF 127
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
+QRL S +ALFA+DE HCVS WGHDFR +YR+L +++ F +P++ LT
Sbjct: 128 IQRL-HSLNVALFAVDEAHCVSHWGHDFRKEYRQLGQIKQQFPG---------VPVVGLT 177
Query: 338 ATATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFS--VKHSKTSSRASYKK 387
ATA I R DIL+ L + + FV SF RPN+R++ K+ T Y K
Sbjct: 178 ATADITTRSDILQQLALEQ--PFVFKGSFDRPNIRYNQLFKYKATDQVIQYVK 228
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+DG IIY +RK+ ++ L G+ A Y+A L ++ +F ++ ++++VAT+
Sbjct: 230 QDGSGIIYCNSRKKVDDLSIALARQGINCAGYHAGLEGPIRDKIQRDFIQDNVDIIVATV 289
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL----- 625
AFGMGI+K NVR ++H+ P+S+EAYYQE GRAGRDG A+ +L + +
Sbjct: 290 AFGMGINKSNVRFVVHFDLPRSVEAYYQETGRAGRDGMPAEALLLFDEKDAARIRQWIGM 349
Query: 626 ---PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
P+R + K A CR ++L+ YF E +S E C CD+C+D P
Sbjct: 350 GDNPARLDIELQKFAAMEAF------AEAQTCRRQVLLNYFSE-YSAEDCGNCDICLD-P 401
Query: 683 PEMKNLKEEANILMQVI 699
P+ + K A +++ I
Sbjct: 402 PKRFDGKVSAQMVLSCI 418
>gi|342905065|ref|ZP_08726857.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21621]
gi|341951895|gb|EGT78444.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21621]
Length = 619
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 131/216 (60%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK FG+ S + Q+E ++A L D LV+ ATG+GKSLC+QIPAL + +VISPL
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFEGLTLVISPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A FL S Q +V+ K + G ++YV PE V +
Sbjct: 78 ISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKV--MTNSFF 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L ++ AIDE HC+S+WGHDFRP+Y +L L+ +F P+MALTAT
Sbjct: 136 QLISYSKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFP---------HAPIMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A R+DIL L++ K++ SF RPN+R++++
Sbjct: 187 ADYATRQDILTHLNLENPHKYI-GSFDRPNIRYTLE 221
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + IIY +R + IA+ L G+ AAAY+A + + RV +
Sbjct: 225 KPMEQLTRFVLAQKGKSGIIYCNSRNKVERIAESLRNKGISAAAYHAGMETALRERVQQD 284
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 285 FQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 344
Query: 616 -ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL 674
A+ + + +L + Q + L + + CR +L+ YFGE C
Sbjct: 345 PADYAWLQKILLEKPETSQRQIEQHKLEAIGEFA-ESQTCRRLVLLNYFGEH-RQTPCNN 402
Query: 675 CDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFV 734
CD+C+D P + L + ++ + Q + G+ QK ++R + K+ V
Sbjct: 403 CDICLDPPKKYDGLVDAQKVMSAIYRV--GQCYGAHYVIAVLRGMHNQKIIERQHDKLSV 460
Query: 735 SKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
I +++S+++ W+ + R + + G++++
Sbjct: 461 YGIGKDKSKEH-------WQSVIRQLIHLGFVQQ 487
>gi|291569161|dbj|BAI91433.1| ATP-dependent DNA helicase [Arthrospira platensis NIES-39]
Length = 739
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 133/237 (56%), Gaps = 27/237 (11%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK++FG+ S + Q+E + L D L + TG GKSLCFQ+PALL + VV+SPLI+
Sbjct: 18 LKQYFGYDSFRPGQREIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 77
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVIRLIKP---- 277
LM DQ L +G+ A FL S N+ Q+ L+G ++YV PE RL+ P
Sbjct: 78 LMQDQVEALKNNGIEATFLNSTVDLNQARQREFAILQGKIKLLYVAPE---RLLSPQFLG 134
Query: 278 -LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L R+ GI+ IDE HCVS WGHDFRP+YR++ +R + +P +AL
Sbjct: 135 FLDRIDAELGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYP---------HVPAIAL 185
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLI 393
TATAT +VR DI++ + + + V SF+R NL + V + KK F QL+
Sbjct: 186 TATATERVRFDIIRQIVLKQPYVHV-ASFYRSNLYYQVIPKQP------KKRFTQLL 235
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 151/293 (51%), Gaps = 22/293 (7%)
Query: 489 SFERTDLL-----NKPAERLSMLQEPLED--GLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF R++L +P +R + L + +E G IIY +RK +A L + A
Sbjct: 212 SFYRSNLYYQVIPKQPKKRFTQLLKAIESMSGSGIIYCSSRKRVEEVALQLQHNNIPALP 271
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A + S HT F + + ++VATIAFGMGIDK +VR +IHY P+SLE YYQE+G
Sbjct: 272 YHAGMADSDRLESHTRFIRDDVRIIVATIAFGMGIDKPDVRFVIHYDLPKSLENYYQESG 331
Query: 602 RAGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG A C+L Y ++ ++ L+ + D+ + A + L Y +T CR +I
Sbjct: 332 RAGRDGQPAQCLLFFSYGDMKTIEYLIEQKPDVDEQRIARQQLRQVIDYAESTE-CRHRI 390
Query: 659 LVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSG 718
+ YFGE+F C CD C P +++ EA + +A E+ M + G
Sbjct: 391 QLRYFGEEFPG-NCDGCDNCCHERP-IEDWTLEAMKFLSCVARCRERFG-MSYIIDVLRG 447
Query: 719 IKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
K Q+ + R + K+ I R+++ W+ LAR + ++G + + +D
Sbjct: 448 SKNQRVVSRGHDKLSTYNIGRDRTVDE-------WKMLARSLLHQGLLDQTND 493
>gi|428184941|gb|EKX53795.1| hypothetical protein GUITHDRAFT_52059, partial [Guillardia theta
CCMP2712]
Length = 340
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 136/238 (57%), Gaps = 20/238 (8%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK+ FG S + QKEA+ L D +V ATG GKSLC+Q+PAL+ V VVISPLI+
Sbjct: 1 LKQAFGLSDFRPLQKEAIHNVLGGKDVIVCLATGGGKSLCYQLPALVLPGVTVVISPLIA 60
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSI-------IYVCPETV--IRLI 275
LM DQ L + G+ A L S + + L +++I +YV PE + L
Sbjct: 61 LMQDQVFSLREKGIDAVLLNSTLSPTET-RNILHRLWAIKHSPIKLLYVTPEALSGSTLF 119
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L RL E ++LFAIDE HC+S WGHDFRP +R+LS+L+ + +P++A
Sbjct: 120 PYLNRLNEQNKLSLFAIDEAHCISSWGHDFRPAFRKLSILKRFYS---------KVPVIA 170
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLI 393
LTATAT +VR+DI +L M +F++ +F RPN+ + V+ + + + D + +
Sbjct: 171 LTATATKRVRDDIASTL-MLNNPEFLIATFNRPNITYEVRFKEQVPDSDVQGDIARFL 227
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 63/100 (63%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY R E IA YL G G AY+A L + + + E K+ +V AT+AFGMG
Sbjct: 236 IIYCFKRTECSEIAMYLKGKGFSIEAYHAGLKNDERSEILQNWTEGKIHIVAATVAFGMG 295
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
IDK +VR +IH P+S+E++YQE+GRAGRDG + VLY
Sbjct: 296 IDKADVRFVIHQTMPKSMESFYQESGRAGRDGKPSVSVLY 335
>gi|83313353|ref|YP_423617.1| superfamily II DNA helicase [Magnetospirillum magneticum AMB-1]
gi|82948194|dbj|BAE53058.1| Superfamily II DNA helicase [Magnetospirillum magneticum AMB-1]
Length = 620
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 134/223 (60%), Gaps = 18/223 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK FG + + Q+E + + D LVL TG+GKSLC+Q+PAL V +V+SPLI
Sbjct: 12 ILKTVFGFPAFRGQQEEVIRHVVEGGDALVLMPTGAGKSLCYQVPALCRDGVAIVVSPLI 71
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQ-PDNK--VEQKALRGMYSIIYVCPETVIRLIKP-LQ 279
+LM +Q L++ GV A L S + PD +E++ G ++YV PE RL+ P
Sbjct: 72 ALMQNQVEALTQLGVRAAALNSARSPDEARVIERRMQAGELDLVYVAPE---RLVLPGFL 128
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L E IALFAIDE HCVS+WGHDFRP+Y +L++L E F A +P +ALTAT
Sbjct: 129 SLLEDCRIALFAIDEAHCVSQWGHDFRPEYLQLALLHERFPA---------VPRIALTAT 179
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
A R DI + L++ G +FV F RPN+R+ + +K ++R
Sbjct: 180 ADGPTRRDIAERLNLQDGRQFV-AGFDRPNIRYRIA-AKNNAR 220
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 90/168 (53%), Gaps = 4/168 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R + A +L G G A AY+A L +S F V+VATIAFGMG
Sbjct: 240 IVYCLSRAKVEETAAWLAGKGYTALAYHAGLDQSVRAGNQERFLREDGIVMVATIAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSED 632
IDK +VR + H P+SLEAYYQE GRAGRDG AD + L + L + S ++ D
Sbjct: 300 IDKPDVRFVAHLDLPKSLEAYYQETGRAGRDGQPADAWMAYGLEDVAKLGQFIASSQASD 359
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVD 680
K+ + T+ CR ++L+EYFGE H C CD C++
Sbjct: 360 AQKRIEWQKLNALLGLCETTRCRRQVLLEYFGET-DHPPCGNCDTCLE 406
>gi|77361487|ref|YP_341062.1| ATP-dependent DNA helicase [Pseudoalteromonas haloplanktis TAC125]
gi|76876398|emb|CAI87620.1| ATP-dependent DNA helicase [Pseudoalteromonas haloplanktis TAC125]
Length = 607
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 139/217 (64%), Gaps = 17/217 (7%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++LK+ FG+S ++ QK + A + D LVL TG GKS+C+QIPAL+ V +VISPL
Sbjct: 17 AVLKQVFGYSEFRDGQKTVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVISPL 76
Query: 223 ISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ ++L GV A ++ + + +V Q+ +G+ ++YV PE V++ + L+
Sbjct: 77 ISLMQDQVTQLQALGVKAAYINNSLAREEQQQVYQQLHQGLIKLLYVAPEKVLQR-EFLE 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
RL+ + I+LFAIDE HCVS WGHDFRP Y RLS L++ F +P+MALTAT
Sbjct: 136 RLSHLK-ISLFAIDEAHCVSHWGHDFRPHYFRLSELKQRFA---------HVPMMALTAT 185
Query: 340 ATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSVK 375
A R DI++ L + + ++ T SF RPN+R++++
Sbjct: 186 ADKATRFDIVEQLKLQQ--PYIHTGSFDRPNIRYTIE 220
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 101/176 (57%), Gaps = 17/176 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK IA+ L G+ AAAY+A + Q + V T F + +++VVAT+AFGMG
Sbjct: 242 IIYCTSRKRVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMG 301
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPS----- 627
I+K NVR ++HY P+S+E+YYQE GRAGRDG A+ ++Y A++ +
Sbjct: 302 INKPNVRFVLHYDIPKSIESYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQ 361
Query: 628 -RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
RR E+Q A ++ CR +IL+ YF E + E C CD+C++ P
Sbjct: 362 RRRVEEQRFNAMASFAEA-------QTCRRQILLNYFSE-YQREPCGNCDICLNPP 409
>gi|449454038|ref|XP_004144763.1| PREDICTED: ATP-dependent DNA helicase Q-like 1-like [Cucumis
sativus]
Length = 601
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 127/214 (59%), Gaps = 18/214 (8%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG+ + + Q EA A + DC +L TG GKSLC+Q+PA + V VVISPL+SL+ D
Sbjct: 196 FGNKAFRPLQHEACKAAASKQDCFILMPTGGGKSLCYQLPATVQPGVTVVISPLLSLIQD 255
Query: 229 QCSKLS-KHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETVI--RLIKPLQR 280
Q L+ K G+ + FL S Q ++ E + + ++YV PE + ++ L+
Sbjct: 256 QIVTLNLKFGIPSTFLNSQQTSSQAAVVLQELRQDKPSCKLLYVTPERIATQSFLEILRF 315
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
+ + +A F +DE HCVS+WGHDFRPDYR L L++NF D+P+MALTATA
Sbjct: 316 MHMKKQLAGFVVDEAHCVSQWGHDFRPDYRNLGCLKQNFP---------DVPVMALTATA 366
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
T VRED+LK+L + + SF RPNL++ V
Sbjct: 367 THSVREDVLKALRIPHAL-ILERSFDRPNLKYEV 399
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 117/212 (55%), Gaps = 20/212 (9%)
Query: 487 DRSFERTDL-------LNKPAERL-SMLQEPLEDGLTIIYVPTRKETLSIAKYLCG-FGV 537
+RSF+R +L +P +L ++E ++ I+Y ++ E + +++ L F +
Sbjct: 387 ERSFDRPNLKYEVVCKTKEPLVQLGQFIKERFKNQCGIVYCLSKSECVEVSETLNKKFKI 446
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
KAA Y+A L Q V ++H +++V ATIAFGMGIDK +VR +IH +S+E+YY
Sbjct: 447 KAAYYHAGLAARQRVLVQKKWHVGDIQIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYY 506
Query: 598 QEAGRAGRDGHLADC-VLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSC--- 653
QE+GRAGRDG+ A C VLY + R ++ ++++M S M C
Sbjct: 507 QESGRAGRDGYPASCIVLYQKKDFSRVVCMLRNAQGFKSESFKM-SMSQGKKMQQFCELK 565
Query: 654 --CRAKILVEYFGEDFSHEKCQL----CDVCV 679
CR ++L+++FGE F + C+ CD C+
Sbjct: 566 DECRRQMLLQHFGESFDRKACKYGSNPCDNCL 597
>gi|299065409|emb|CBJ36578.1| ATP-dependent DNA helicase [Ralstonia solanacearum CMR15]
Length = 637
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 135/228 (59%), Gaps = 23/228 (10%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK- 214
D ++L FG+S+ + Q + ++ DCLVL TG GKSLC+QIPAL+ +
Sbjct: 17 DTAAATRAVLHDVFGYSAFRGPQADIVAHVADGGDCLVLMPTGGGKSLCYQIPALVRHRR 76
Query: 215 ---VVVVISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCP 268
+V+SPLI+LM DQ + L + GV A +L S G +VE+ G ++YV P
Sbjct: 77 GQGAGIVVSPLIALMQDQVAALEEAGVRAAYLNSALSGAEAAQVERDLAAGRLDLVYVAP 136
Query: 269 ETVIRLIKP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
E RL+ P L+ L SR I LFAIDE HCVS+WGHDFRP+Y +LSVL E F
Sbjct: 137 E---RLMTPRFLELLERSR-IGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP------ 186
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P +ALTATA R++I++ L + G + L+SF RPN+R+++
Sbjct: 187 ---HVPRIALTATADAVTRDEIVERLALG-GARVFLSSFDRPNIRYTI 230
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 116/234 (49%), Gaps = 19/234 (8%)
Query: 489 SFERTDLLNKPAERLSMLQEPL---------EDG--LTIIYVPTRKETLSIAKYLCGFGV 537
SF+R ++ E+ S Q+ L EDG IIY +RK+ A++L G+
Sbjct: 220 SFDRPNIRYTIVEKDSARQQLLRFIRAEHLGEDGCDAGIIYCLSRKKVEETAQWLAEQGL 279
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
+A Y+A + R F + + V+VATIAFGMGIDK +VR + H P+SLE YY
Sbjct: 280 RALPYHAGMDVETRARHQAIFRKEEGVVMVATIAFGMGIDKPDVRFVAHLDLPKSLEGYY 339
Query: 598 QEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCC 654
QE GRAGRDG A+ + A++ ++ ++D K+ D ++ C
Sbjct: 340 QETGRAGRDGMPANAWMAYGLADVVQQRRMIDESDADDVHKRVSTAKLDALLGLCESAGC 399
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNS 708
R L+ YFGE S E C CD C+ PP+ + EA + + + Y Q S
Sbjct: 400 RRVALLAYFGE--SSEPCGNCDTCLS-PPQTWDATREAQMALSCV--YRVQQAS 448
>gi|242013217|ref|XP_002427311.1| blooms syndrome DNA helicase, putative [Pediculus humanus corporis]
gi|212511652|gb|EEB14573.1| blooms syndrome DNA helicase, putative [Pediculus humanus corporis]
Length = 1152
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/233 (42%), Positives = 131/233 (56%), Gaps = 21/233 (9%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG S + Q + ++A L HDC VL TG GKSLC+Q+PA+++ V VVISPL SL+ D
Sbjct: 403 FGLKSFRTNQLQVMNAALLGHDCFVLMPTGGGKSLCYQLPAIVSQGVTVVISPLRSLILD 462
Query: 229 QCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETV---IRLIKPLQR 280
Q +KL + AC L +++V + ++YV PE V L R
Sbjct: 463 QVTKLVTLDIKACHLSGDVKESEVVDIYRKLNMPEPEIKLLYVTPEKVGASTSLRNIFSR 522
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L +A F IDE HCVS+WGHDFRPDY++L LREN+ ++ +MALTATA
Sbjct: 523 LYNRNMLARFVIDEAHCVSQWGHDFRPDYKKLRELRENYP---------NVNIMALTATA 573
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLI 393
T +VR DIL L + K K+ L+SF R NL ++VK K S KD LI
Sbjct: 574 TPRVRIDILHQLKV-KSPKWFLSSFNRSNLCYAVKEKKGKSTL---KDIAALI 622
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 108/211 (51%), Gaps = 20/211 (9%)
Query: 489 SFERTDLLNKPAER---------LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539
SF R++L E+ +++Q+ IIY +RKE +A+ L G+ A
Sbjct: 596 SFNRSNLCYAVKEKKGKSTLKDIAALIQQEFSRDTGIIYCFSRKECEDVARDLKVHGIGA 655
Query: 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599
Y+A L ++ + + K++VV ATIAFGMGIDKL+VR + HY P+S+E YYQE
Sbjct: 656 IPYHAGLNDTERTKAQNLWMNGKVKVVCATIAFGMGIDKLDVRYVFHYSLPKSIEGYYQE 715
Query: 600 AGRAGRDGHLADCVLYANLSS---MPTLLPSRRSEDQTKQAYRMLSDCFR---YGMNTSC 653
+GRAGRDG A C+LY + M L+ +S + + +R + N +
Sbjct: 716 SGRAGRDGEKATCILYYSYRDKHRMLKLINMDQSMSNMAAKKVHIDNLYRVVAFAENVTD 775
Query: 654 CRAKILVEYFGEDFSHEKC-----QLCDVCV 679
CR + + YFGE F + C CD C+
Sbjct: 776 CRRSLQLNYFGEKFDRKVCIENRETACDNCL 806
>gi|17547744|ref|NP_521146.1| ATP-dependent DNA helicase [Ralstonia solanacearum GMI1000]
gi|17430049|emb|CAD16734.1| probable atp-dependent dna helicase protein [Ralstonia solanacearum
GMI1000]
Length = 637
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 135/228 (59%), Gaps = 23/228 (10%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK- 214
D ++L FG+S+ + Q + ++ DCLVL TG GKSLC+QIPAL+ +
Sbjct: 17 DTAAATRAVLHDVFGYSAFRGPQADIVAHVADGGDCLVLMPTGGGKSLCYQIPALVRHRR 76
Query: 215 ---VVVVISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCP 268
+V+SPLI+LM DQ + L + GV A +L S G +VE+ G ++YV P
Sbjct: 77 GQGAGIVVSPLIALMQDQVAALEEAGVRAAYLNSALSGAEAAQVERDLAAGRLDLVYVAP 136
Query: 269 ETVIRLIKP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
E RL+ P L+ L SR I LFAIDE HCVS+WGHDFRP+Y +LSVL E F
Sbjct: 137 E---RLMTPRFLELLERSR-IGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP------ 186
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P +ALTATA R++I++ L + G + L+SF RPN+R+++
Sbjct: 187 ---HVPRIALTATADAVTRDEIVERLALG-GARVFLSSFDRPNIRYTI 230
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 116/234 (49%), Gaps = 19/234 (8%)
Query: 489 SFERTDLLNKPAERLSMLQEPL---------EDG--LTIIYVPTRKETLSIAKYLCGFGV 537
SF+R ++ E+ S Q+ L EDG IIY +RK+ A++L G+
Sbjct: 220 SFDRPNIRYTIVEKDSARQQLLRFIRAEHLGEDGCDAGIIYCLSRKKVEETAQWLAEQGL 279
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
+A Y+A + R F + + V+VATIAFGMGIDK +VR + H P+SLE YY
Sbjct: 280 RALPYHAGMDAETRARHQAIFRKEEGVVMVATIAFGMGIDKPDVRFVAHLDLPKSLEGYY 339
Query: 598 QEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCC 654
QE GRAGRDG A+ + A++ ++ ++D K+ D ++ C
Sbjct: 340 QETGRAGRDGLPANAWMAYGLADVVQQRRMIDESDADDVHKRVSTAKLDALLGLCESAGC 399
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNS 708
R L+ YFGE S E C CD C+ PP+ + EA + + + Y Q S
Sbjct: 400 RRVALLAYFGE--SSEPCGNCDTCLS-PPQTWDATREAQMALSCV--YRVQQAS 448
>gi|406997576|gb|EKE15607.1| hypothetical protein ACD_11C00117G0003 [uncultured bacterium]
Length = 719
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 126/223 (56%), Gaps = 15/223 (6%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ ++LKK+FG + Q+E + L D VL TG GKSLC+Q+PAL + +VIS
Sbjct: 1 METILKKYFGFDEFRPLQREIIENVLNKRDTFVLMPTGGGKSLCYQLPALKFPGITLVIS 60
Query: 221 PLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ L GV A FL SG +++++ G I+Y+ PE +
Sbjct: 61 PLIALMKDQVDFLKASGVAAEFLNSSLSGDEIQRIQKEIKEGKVKILYIAPERMAS--NG 118
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
+ ++ +L A+DE HC+S+WGHDFRPDYR L L++ F +P+MALT
Sbjct: 119 FENFLQNLKPSLIAVDEAHCISEWGHDFRPDYRNLRRLKDIFPG---------VPIMALT 169
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380
ATAT +VR+DIL L+ F+ +SF R NL F V K S
Sbjct: 170 ATATEKVRQDILNQLNFENPNIFI-SSFNRDNLFFRVIEKKNS 211
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 122/229 (53%), Gaps = 8/229 (3%)
Query: 456 SVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLT 515
+ E + D ++ + + S +RD R E+ + E+L L E
Sbjct: 172 ATEKVRQDILNQLNFENPNIFISSFNRDNLFFRVIEKKNSF----EKLLKLLENRRKESV 227
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+T ++A L G A AY+A L ++ ++ +F ++K+ ++VATIAFGMG
Sbjct: 228 IIYCFSRKDTENLALNLRSEGFSALAYHAGLDSAKRKKTQEDFIQDKINIIVATIAFGMG 287
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSED 632
IDK +VR ++HY +P+SLE YYQE GRAGRDG A+CV+ +A+ + E+
Sbjct: 288 IDKPDVRMVVHYTFPKSLEGYYQEVGRAGRDGLPAECVMFYTFADARKHRYFINVMDDEN 347
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
+Q R L + Y SC R IL YFGE + E C CD C+ G
Sbjct: 348 LKRQTERKLQEVMDYADLNSCRRRHIL-SYFGEKYEKENCGGCDHCLSG 395
>gi|395764171|ref|ZP_10444840.1| ATP-dependent DNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 607
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/225 (41%), Positives = 130/225 (57%), Gaps = 15/225 (6%)
Query: 153 IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT 212
+ D + LL+ FG+ + + Q + + D LVL TG GKSLC+QIPALL
Sbjct: 1 MNQDLNQRALHLLQTVFGYPAFRGHQADIVDHVSHGGDALVLMPTGGGKSLCYQIPALLR 60
Query: 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPE 269
V VV+SPLI+LM DQ L + GV A FL S Q +++E+ G ++YV PE
Sbjct: 61 DGVGVVVSPLIALMQDQVDALEEVGVRAAFLNSTQTYEEASRIERLVRTGGIDVVYVAPE 120
Query: 270 TVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKF 329
+ + + L ++ I+LFAIDE HCV++WGHDFRP+Y +LSVL E F
Sbjct: 121 RL--MTQRCLDLFQASKISLFAIDEAHCVAQWGHDFRPEYIKLSVLHEQFP--------- 169
Query: 330 DIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
D+P +ALTATA Q R +I L + +FV +SF RPN+R+ +
Sbjct: 170 DVPRIALTATADPQTRAEIALRLQLEDARQFV-SSFDRPNIRYQI 213
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 89/170 (52%), Gaps = 5/170 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+ A++L G++A Y+A + ++ F + V+VATIAFGMG
Sbjct: 237 IVYCLSRKKVEETAEFLNQSGIRALPYHAGMEYAKRSANQARFLREENIVMVATIAFGMG 296
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG A+ + L + ++ ++D
Sbjct: 297 IDKPDVRFVAHLDLPKSIEGYYQETGRAGRDGMAANAWMAYGLQDVVLQRRMIDESEADD 356
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
K+ + D T CR L+EYFGE S C CD C+ P
Sbjct: 357 TFKRVLGVKLDAMLGLCETLSCRRMRLLEYFGEPAS--PCGNCDTCLVPP 404
>gi|332667951|ref|YP_004450739.1| ATP-dependent DNA helicase RecQ [Haliscomenobacter hydrossis DSM
1100]
gi|332336765|gb|AEE53866.1| ATP-dependent DNA helicase RecQ [Haliscomenobacter hydrossis DSM
1100]
Length = 713
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/263 (37%), Positives = 141/263 (53%), Gaps = 26/263 (9%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K LK++FG+ + Q E + A A D LVL TG GKS+CFQIPA+ VV+
Sbjct: 5 KAKQALKRYFGYDQFRPLQAEIIRAIFAGKDALVLMPTGGGKSVCFQIPAVTMPGTCVVV 64
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVI--RL 274
SPLISLM DQ L +G+ A FL S + KVE+ G +++YV PE ++
Sbjct: 65 SPLISLMKDQVEGLRANGIQAAFLNSAIDSREQLKVEESFYAGALNLLYVSPEKLVSGNF 124
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ L+R I LFAIDE HC+S WGHDFRP+Y ++ +L+++F +P++
Sbjct: 125 VSILKR----GKINLFAIDEAHCISAWGHDFRPEYTQMGMLKQHFP---------QVPVI 171
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLID 394
ALTATA R+DI+ L + + F+ SF RPNL V+ + R ++F Q
Sbjct: 172 ALTATADKLTRKDIVDQLKLEEPGIFI-ASFDRPNLSLEVRPGQ--QRLGQIQEFVQKHP 228
Query: 395 -----IYTKKKKTGEKEKSAIPQ 412
IY +KT E + + Q
Sbjct: 229 KQAGIIYCLSRKTAEDVAAKLAQ 251
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 125/228 (54%), Gaps = 16/228 (7%)
Query: 489 SFERTDL---LNKPAERLSMLQE-----PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAA 540
SF+R +L + +RL +QE P + G IIY +RK +A L G+KA
Sbjct: 200 SFDRPNLSLEVRPGQQRLGQIQEFVQKHPKQAG--IIYCLSRKTAEDVAAKLAQQGLKAE 257
Query: 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
AY+A L + ++ F + + ++ AT+AFGMGIDK NVR +IHY P++LE YYQE
Sbjct: 258 AYHAGLSPDRRSKIQDNFINDNIHIICATVAFGMGIDKSNVRWVIHYNLPKNLEGYYQEI 317
Query: 601 GRAGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD +L +A++S + ++ + + Q + L +Y + CR +
Sbjct: 318 GRAGRDGAKADTLLFYSFADVSMLRDIIQNGENAAQNEIQLVKLERMQQYA-ESLACRRR 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQ 705
IL+ YF E+ S + C CD+C + PP+ + + A + + NEQ
Sbjct: 377 ILLAYFSENLS-KNCGNCDICRN-PPQYIDGTQIAQKALSAVYRVNEQ 422
>gi|409992245|ref|ZP_11275447.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis str. Paraca]
gi|409936909|gb|EKN78371.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis str. Paraca]
Length = 739
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 133/237 (56%), Gaps = 27/237 (11%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK++FG+ S + Q+E + L D L + TG GKSLCFQ+PALL + VV+SPLI+
Sbjct: 18 LKQYFGYDSFRPGQREIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 77
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVIRLIKP---- 277
LM DQ L +G+ A FL S N+ Q+ L+G ++YV PE RL+ P
Sbjct: 78 LMQDQVEALKNNGIEATFLNSTVDLNQARQREFAILQGKIKLLYVAPE---RLLSPQFLG 134
Query: 278 -LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L R+ GI+ IDE HCVS WGHDFRP+YR++ +R + +P +AL
Sbjct: 135 FLDRIDAELGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYP---------HVPAIAL 185
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLI 393
TATAT +VR DI++ + + + V SF+R NL + V + KK F QL+
Sbjct: 186 TATATERVRFDIIRQIVLKQPYVHV-ASFYRSNLYYQVIPKQP------KKRFTQLL 235
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 151/293 (51%), Gaps = 22/293 (7%)
Query: 489 SFERTDLL-----NKPAERLSMLQEPLED--GLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF R++L +P +R + L + +E G IIY +RK +A L + A
Sbjct: 212 SFYRSNLYYQVIPKQPKKRFTQLLKAIESMSGSGIIYCSSRKRVEEVALQLQHNNIPALP 271
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A + S HT F + + ++VATIAFGMGIDK +VR +IHY P+SLE YYQE+G
Sbjct: 272 YHAGMADSDRLESHTRFIRDDVRIIVATIAFGMGIDKPDVRFVIHYDLPKSLENYYQESG 331
Query: 602 RAGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG A C+L Y ++ ++ L+ + D+ + A + L Y +T CR +I
Sbjct: 332 RAGRDGQPAQCLLFFSYGDMKTIEYLIEQKPDVDEQRIARQQLRQVIDYAESTE-CRHRI 390
Query: 659 LVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSG 718
+ YFGE+F C CD C P +++ EA + +A E+ M + G
Sbjct: 391 QLRYFGEEFPG-NCDGCDNCCHERP-IEDWTLEAMKFLSCVARCRERFG-MSYIIDVLRG 447
Query: 719 IKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
K Q+ + R + K+ I R+++ W+ LAR + ++G + + +D
Sbjct: 448 SKNQRVLSRGHDKLSTYNIGRDRTVDE-------WKMLARSLLHQGLLDQTND 493
>gi|344172736|emb|CCA85390.1| ATP-dependent DNA helicase [Ralstonia syzygii R24]
Length = 637
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 135/228 (59%), Gaps = 23/228 (10%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK- 214
D ++L FG+S+ + Q + ++ DCLVL TG GKSLC+QIPAL+ +
Sbjct: 17 DTAAATRAVLHDVFGYSAFRGPQADIVAHVADGGDCLVLMPTGGGKSLCYQIPALVRHRR 76
Query: 215 ---VVVVISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCP 268
+V+SPLI+LM DQ + L + GV A +L S G +VE+ G ++YV P
Sbjct: 77 GQGAGIVVSPLIALMQDQVAALEEAGVRAAYLNSALSGAEAAQVERDLAAGRLDLVYVAP 136
Query: 269 ETVIRLIKP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
E RL+ P L+ L SR I LFAIDE HCVS+WGHDFRP+Y +LSVL E F
Sbjct: 137 E---RLMTPRFLELLERSR-IGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP------ 186
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P +ALTATA R++I++ L + G + L+SF RPN+R+++
Sbjct: 187 ---HVPRIALTATADAVTRDEIVERLALG-GARVFLSSFDRPNIRYTI 230
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 116/234 (49%), Gaps = 19/234 (8%)
Query: 489 SFERTDLLNKPAERLSMLQEPL---------EDG--LTIIYVPTRKETLSIAKYLCGFGV 537
SF+R ++ E+ S Q+ L EDG I+Y +RK+ A++L G+
Sbjct: 220 SFDRPNIRYTIVEKDSARQQLLRFIRAEHIGEDGCDAGIVYCLSRKKVEETAQWLAEQGI 279
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
+A Y+A + R F + + V+VATIAFGMGIDK +VR + H P+SLE YY
Sbjct: 280 RALPYHAGMDAEIRTRHQAIFRKEEGVVMVATIAFGMGIDKPDVRFVAHLDLPKSLEGYY 339
Query: 598 QEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCC 654
QE GRAGRDG A+ + A++ ++ ++D K+ D ++ C
Sbjct: 340 QETGRAGRDGLPANAWMAYGLADVVQQRRMIDESEADDVHKRVSTAKLDALLGLCESAGC 399
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNS 708
R L+ YFGE S + C CD C+ PP+ + EA + + + Y Q S
Sbjct: 400 RRVALLAYFGE--SSQPCGNCDTCLS-PPQTWDATREAQMALSCV--YRVQQAS 448
>gi|300690154|ref|YP_003751149.1| ATP-dependent DNA helicase [Ralstonia solanacearum PSI07]
gi|299077214|emb|CBJ49840.2| ATP-dependent DNA helicase [Ralstonia solanacearum PSI07]
gi|344168960|emb|CCA81281.1| ATP-dependent DNA helicase [blood disease bacterium R229]
Length = 637
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 135/228 (59%), Gaps = 23/228 (10%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK- 214
D ++L FG+S+ + Q + ++ DCLVL TG GKSLC+QIPAL+ +
Sbjct: 17 DTAAATRAVLHDVFGYSAFRGPQADIVAHVADGGDCLVLMPTGGGKSLCYQIPALVRHRR 76
Query: 215 ---VVVVISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCP 268
+V+SPLI+LM DQ + L + GV A +L S G +VE+ G ++YV P
Sbjct: 77 GQGAGIVVSPLIALMQDQVAALEEAGVRAAYLNSALSGAEAAQVERDLAAGRLDLVYVAP 136
Query: 269 ETVIRLIKP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
E RL+ P L+ L SR I LFAIDE HCVS+WGHDFRP+Y +LSVL E F
Sbjct: 137 E---RLMTPRFLELLERSR-IGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP------ 186
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P +ALTATA R++I++ L + G + L+SF RPN+R+++
Sbjct: 187 ---HVPRIALTATADAVTRDEIVERLALG-GARVFLSSFDRPNIRYTI 230
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 116/234 (49%), Gaps = 19/234 (8%)
Query: 489 SFERTDLLNKPAERLSMLQEPL---------EDG--LTIIYVPTRKETLSIAKYLCGFGV 537
SF+R ++ E+ S Q+ L EDG I+Y +RK+ A++L G+
Sbjct: 220 SFDRPNIRYTIVEKDSARQQLLRFIRAEHIGEDGCDAGIVYCLSRKKVEETAQWLAEQGI 279
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
+A Y+A + R F + + V+VATIAFGMGIDK +VR + H P+SLE YY
Sbjct: 280 RALPYHAGMDAEIRTRHQAIFRKEEGVVMVATIAFGMGIDKPDVRFVAHLDLPKSLEGYY 339
Query: 598 QEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCC 654
QE GRAGRDG A+ + A++ ++ ++D K+ D ++ C
Sbjct: 340 QETGRAGRDGLPANAWMAYGLADVVQQRRMIDESEADDVHKRVSTAKLDALLGLCESAGC 399
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNS 708
R L+ YFGE S + C CD C+ PP+ + EA M + AY Q S
Sbjct: 400 RRVALLAYFGE--SSQPCGNCDTCLS-PPQTWDATREAQ--MALSCAYRVQQAS 448
>gi|376003245|ref|ZP_09781059.1| ATP-dependent DNA helicase [Arthrospira sp. PCC 8005]
gi|375328405|emb|CCE16812.1| ATP-dependent DNA helicase [Arthrospira sp. PCC 8005]
Length = 739
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 138/244 (56%), Gaps = 21/244 (8%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK++FG+ S + Q+E + L D L + TG GKSLCFQ+PALL + +V+SPLI+
Sbjct: 18 LKQYFGYDSFRPGQQEIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKPGLTLVVSPLIA 77
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L +G+ A FL S ++ Q+ L+G ++YV PE ++ + ++ L
Sbjct: 78 LMQDQVEALKDNGIGATFLNSTVDIHEARQRESAILQGQIKLLYVAPERLLSPQFLEFLD 137
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
RL + GI+ IDE HCVS WGHDFRP+YR++ +R + +P +ALTAT
Sbjct: 138 RLEAAFGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYP---------HVPAIALTAT 188
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKK 399
AT +VR DI+K + + + V SF+R NL + V + KK F QL+ +
Sbjct: 189 ATERVRFDIIKQIVLKQPYVHV-ASFYRSNLYYQVIPKQP------KKRFTQLLKVIESM 241
Query: 400 KKTG 403
+G
Sbjct: 242 SGSG 245
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 152/293 (51%), Gaps = 22/293 (7%)
Query: 489 SFERTDLL-----NKPAERLSMLQEPLED--GLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF R++L +P +R + L + +E G IIY +RK +A L ++A
Sbjct: 212 SFYRSNLYYQVIPKQPKKRFTQLLKVIESMSGSGIIYCSSRKRVEEVALKLQHHNIQALP 271
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A + S HT F + + ++VATIAFGMGIDK +VR +IHY P+SLE YYQE+G
Sbjct: 272 YHAGMADSDRLESHTRFIRDDVRIIVATIAFGMGIDKPDVRFVIHYDLPKSLENYYQESG 331
Query: 602 RAGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG A C+L Y ++ ++ L+ + D+ + A + L Y +T CR +I
Sbjct: 332 RAGRDGQPAQCLLFFSYGDMKTIEYLIEQKPDVDEQRIARQQLRQVIDYAESTE-CRHRI 390
Query: 659 LVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSG 718
+ YFGE+F C CD C P M++ EA + +A E+ M + G
Sbjct: 391 QLRYFGEEFP-GNCGTCDNCCHQRP-MEDWTVEAMKFLSCVARCRERFG-MSYIIDVLRG 447
Query: 719 IKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
K Q+ + R + K+ I R+++ W+ LAR + ++G + + +D
Sbjct: 448 AKNQRVLSRGHDKLSTYNIGRDRTVDE-------WKMLARSLLHQGLLDQTND 493
>gi|153809531|ref|ZP_01962199.1| hypothetical protein BACCAC_03849 [Bacteroides caccae ATCC 43185]
gi|423219543|ref|ZP_17206039.1| ATP-dependent DNA helicase RecQ [Bacteroides caccae CL03T12C61]
gi|149127839|gb|EDM19062.1| ATP-dependent DNA helicase RecQ [Bacteroides caccae ATCC 43185]
gi|392624748|gb|EIY18826.1| ATP-dependent DNA helicase RecQ [Bacteroides caccae CL03T12C61]
Length = 601
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 126/214 (58%), Gaps = 16/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ S + Q+E + ++ D LVL TG GKS+C+Q+PALL VV+SPLIS
Sbjct: 5 LKTYFGYDSFRPLQEEIIRHIMSRQDALVLMPTGGGKSICYQLPALLCEGTAVVVSPLIS 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A L S + + + + + G ++Y+ PE +L+ L
Sbjct: 65 LMKDQVEALQANGIAAGALNSSNDETENANLRRACIEGRLKLLYISPE---KLLAEKDYL 121
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
I+LFAIDE HC+S+WGHDFRP+Y ++ +L + F +P++ALTATA
Sbjct: 122 LRDMHISLFAIDEAHCISQWGHDFRPEYTQMGMLHQQFP---------QVPIVALTATAD 172
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
REDI++ LH+ F+ +SF RPN+ +VK
Sbjct: 173 KITREDIVRQLHLVHPRTFI-SSFDRPNISLTVK 205
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 96/167 (57%), Gaps = 2/167 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R +T ++A+ L G++ Y+A L + +F ++++VV ATIAFGMG
Sbjct: 230 IIYCMSRSKTETVAQMLQKQGIRCGVYHAGLSAQKRDETQDDFINDRIQVVCATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG +D VL+ +L + L +Q
Sbjct: 290 IDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTVLFYSLGDLILLTKFATESNQQS 349
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
L +Y CR +IL+ YFGE + E C CDVC + P
Sbjct: 350 INLEKLQRMQQYA-EADICRRRILLSYFGET-ATEDCGNCDVCKNPP 394
>gi|264676290|ref|YP_003276196.1| ATP-dependent DNA helicase RecQ [Comamonas testosteroni CNB-2]
gi|262206802|gb|ACY30900.1| ATP-dependent DNA helicase RecQ [Comamonas testosteroni CNB-2]
Length = 636
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 131/229 (57%), Gaps = 19/229 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL----LTGKVVV 217
S+L+ FG+ + Q+ +S + D LVL TG GKSLC+Q+PA+ L V +
Sbjct: 5 QSILQAVFGYEQFRGPQQAIVSHVINGGDALVLMPTGGGKSLCYQVPAIARQQLGHGVTI 64
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR---GMYSIIYVCPE--TVI 272
V+SPLI+LMHDQ L + G++A +L S ++ ++ LR G +++Y PE
Sbjct: 65 VVSPLIALMHDQVGALHEAGISAAYLNSTLSYDETQEVELRLQSGDITLLYAAPERLNTP 124
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
R + L L ++LFAIDE HCVS+WGHDFRP+YR LSVL + + D+P
Sbjct: 125 RFLGLLDDLHAQGKLSLFAIDEAHCVSQWGHDFRPEYRALSVLHQRYA---------DVP 175
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
+ALTATA R DI++ L + F+ +SF RPN+R+ + K S
Sbjct: 176 RIALTATADALTRADIIERLQLEAAQHFI-SSFDRPNIRYKIAEKKDVS 223
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 115/243 (47%), Gaps = 25/243 (10%)
Query: 489 SFERTDLLNKPAER-------LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ K AE+ L ++ E +IY +RK +A+ L G+ A
Sbjct: 206 SFDRPNIRYKIAEKKDVSNQLLRFIEREHEGEAGVIYCQSRKRVEELAQTLVQNGINALP 265
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A LP+ + F + V+ ATIAFGMGI+K +VR + H P+++E YYQE G
Sbjct: 266 YHAGLPQEMRQNHQDRFLREEGVVMCATIAFGMGINKPDVRFVAHVDMPKNIEGYYQETG 325
Query: 602 RAGRDGHLADCVLYANLSSMPT---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG AD + LS + ++ +E+Q KQ R D + CR
Sbjct: 326 RAGRDGLPADAWMAYGLSDVVNQRRMIDESPAEEQFKQVMRGKLDALLGLAEATDCRRVR 385
Query: 659 LVEYFGEDFSHE--------------KCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNE 704
L+ YFGE + E C CD C++ PP + + + A L+ I +E
Sbjct: 386 LLAYFGEQYGQEPSLDGKPLQAVARTHCGNCDNCLE-PPALWDGTDAARKLLSTIFRVHE 444
Query: 705 QSN 707
S
Sbjct: 445 ASG 447
>gi|415758430|ref|ZP_11481551.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416048573|ref|ZP_11576347.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347992536|gb|EGY33932.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|348655277|gb|EGY70749.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D17P-3]
Length = 629
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 131/214 (61%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ S + Q+E ++A L DCLV+ ATG+GKSLC+QIPAL +V+SPLI
Sbjct: 34 VLHSVFGYQSFRKGQQEIINAVLNGQDCLVIMATGTGKSLCYQIPALCFDGTTLVVSPLI 93
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +GV A +L S Q +V+ +A+ G ++Y+ PE V + +
Sbjct: 94 SLMKDQVDQLRANGVAADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEKV--MTSSFFQ 151
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
++ AIDE HC+S+WGHDFRP+Y +L L+ +F +P+MALTATA
Sbjct: 152 FISLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGSFP---------KVPIMALTATA 202
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++DIL++L +++ F + SF RPN+R+++
Sbjct: 203 DQTTQQDILQNLRLNR-PHFYVGSFDRPNIRYTL 235
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 142/280 (50%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L + I+Y +R + IA+ LC GV+AAAY+A + +V +
Sbjct: 240 KPMEQLCRFVLAQKGKSGIVYCNSRNKVERIAETLCNKGVRAAAYHAGMENGLREKVQRD 299
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 300 FQRDNIQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYD 359
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + +L P R+ E QA ++ + CR +L+ YFGE
Sbjct: 360 PADYVWLNKMLMEKPETPQRQIEQHKLQAIGEFAE-------SQTCRRLVLLNYFGEH-R 411
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
CQ CD+C+D PP+ N +A +M I Q + G+ QK D+
Sbjct: 412 QTPCQNCDICLD-PPKKYNGLLDAQKIMSAIYR-TGQCYGAHYVIAVLRGMNNQKIRDQH 469
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ ++ V I +E +Y W+ + R + + G +R+
Sbjct: 470 HEQLSVYGIGKEHGTEY-------WQSVLRQLVHLGLVRQ 502
>gi|78357489|ref|YP_388938.1| ATP-dependent DNA helicase RecQ [Desulfovibrio alaskensis G20]
gi|78219894|gb|ABB39243.1| ATP-dependent DNA helicase RecQ [Desulfovibrio alaskensis G20]
Length = 739
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 17/216 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L +G + QK+ + + D LVL TG GKSLC+QIP+++ +VISPLI
Sbjct: 8 ILISTYGFRDFQGLQKDIIEHTASGGDALVLMPTGGGKSLCYQIPSIMRQGTGIVISPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKP-LQ 279
+LM DQ L++ GV A FL S + +VE + L GM ++YV PE RL++P
Sbjct: 68 ALMQDQVDSLTQMGVRAAFLNSSLSPEKQREVEARLLSGMLDLVYVAPE---RLVQPAFL 124
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L E ALFAIDE HCVS+WGHDFRP+Y RL++L E F +P +ALTAT
Sbjct: 125 GLLERITPALFAIDEAHCVSQWGHDFRPEYTRLTILHEQFP---------HVPRIALTAT 175
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A R DI++ L + T F T F RPN+ ++++
Sbjct: 176 ADGPTRRDIIRHLDLQDATVFS-TGFDRPNISYTIQ 210
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 97/186 (52%), Gaps = 5/186 (2%)
Query: 497 NKPAERLSMLQEPLEDGLT-IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH 555
+KP E+L G + I+Y +RK+ A +LC G++A Y+A L Q
Sbjct: 213 DKPLEQLLHFIRTRHKGQSGIVYRLSRKKVEETAAWLCAKGIEALPYHAGLNAIQRHHNQ 272
Query: 556 TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
F V+VAT+AFGMG+DK +VR + H P+SLEAY+QE GRAGRDG AD +
Sbjct: 273 ERFMREDGLVMVATVAFGMGVDKPDVRFVAHLEPPKSLEAYHQETGRAGRDGLPADAWMT 332
Query: 616 ANLSSMPTL--LPSRRSEDQTKQAYRMLS-DCFRYGMNTSCCRAKILVEYFGEDFSHEKC 672
L+ + L + + ED ++ + D T+ CR K+L+ YFGE E C
Sbjct: 333 YGLADVVQLRRMLGQGEEDSPRRMVELRKLDAMLAFCETTECRRKVLLGYFGE-HDREPC 391
Query: 673 QLCDVC 678
CD C
Sbjct: 392 GNCDTC 397
>gi|300702774|ref|YP_003744375.1| ATP-dependent DNA helicase [Ralstonia solanacearum CFBP2957]
gi|299070436|emb|CBJ41731.1| ATP-dependent DNA helicase [Ralstonia solanacearum CFBP2957]
Length = 637
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 135/228 (59%), Gaps = 23/228 (10%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK- 214
D ++L FG+S+ + Q + ++ DCLVL TG GKSLC+QIPAL+ +
Sbjct: 17 DTAAATRAVLHDVFGYSAFRGPQADIVTHVADGGDCLVLMPTGGGKSLCYQIPALVRHRR 76
Query: 215 ---VVVVISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCP 268
+V+SPLI+LM DQ + L + GV A +L S G +VE+ G ++YV P
Sbjct: 77 GQGAGIVVSPLIALMQDQVAALEEAGVRAAYLNSALTGAEAARVERDLAAGRLDLVYVAP 136
Query: 269 ETVIRLIKP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
E RL+ P L+ L SR I LFAIDE HCVS+WGHDFRP+Y +LSVL E F
Sbjct: 137 E---RLMTPRFLELLERSR-IGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP------ 186
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P +ALTATA R++I++ L + G + L+SF RPN+R+++
Sbjct: 187 ---HVPRIALTATADAVTRDEIVERLALG-GERVFLSSFDRPNIRYTI 230
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 116/234 (49%), Gaps = 19/234 (8%)
Query: 489 SFERTDLLNKPAERLSMLQEPL---------EDG--LTIIYVPTRKETLSIAKYLCGFGV 537
SF+R ++ E+ S Q+ L EDG I+Y +RK+ A++L G+
Sbjct: 220 SFDRPNIRYTIVEKDSARQQLLRFIRAEHLGEDGCDAGIVYCLSRKKVEETAQWLAEQGI 279
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
+A Y+A + R F + + V+VATIAFGMGIDK +VR + H P+SLE YY
Sbjct: 280 RALPYHAGMDVETRARHQAIFRKEEGVVMVATIAFGMGIDKPDVRFVAHLDLPKSLEGYY 339
Query: 598 QEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCC 654
QE GRAGRDG A+ + A++ ++ ++D K+ D ++ C
Sbjct: 340 QETGRAGRDGLPANAWMAYGLADVVQQRRMIDESDADDVHKRVSTAKLDALLGLCESAGC 399
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNS 708
R L+ YFGE S + C CD C+ PP+ + EA + + + Y Q S
Sbjct: 400 RRVALLAYFGE--SSQPCGNCDTCLS-PPQTWDATREAQMALSCV--YRVQQAS 448
>gi|197287158|ref|YP_002153030.1| ATP-dependent DNA helicase RecQ [Proteus mirabilis HI4320]
gi|227357149|ref|ZP_03841518.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906]
gi|425070259|ref|ZP_18473373.1| ATP-dependent DNA helicase recQ [Proteus mirabilis WGLW6]
gi|425074080|ref|ZP_18477185.1| ATP-dependent DNA helicase recQ [Proteus mirabilis WGLW4]
gi|194684645|emb|CAR46565.1| ATP-dependent DNA helicase [Proteus mirabilis HI4320]
gi|227162681|gb|EEI47648.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906]
gi|404594320|gb|EKA94907.1| ATP-dependent DNA helicase recQ [Proteus mirabilis WGLW4]
gi|404595525|gb|EKA96065.1| ATP-dependent DNA helicase recQ [Proteus mirabilis WGLW6]
Length = 609
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 132/215 (61%), Gaps = 17/215 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L++ FG+ + Q+E + + DCLV+ TG GKSLC+QIPALL + VV+SPLI
Sbjct: 16 ILRETFGYQQFRPGQQEIIDTIITGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 75
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L HG+ A FL S Q + +V+ + RG ++Y+ PE ++ + L
Sbjct: 76 SLMKDQVDQLCLHGIDAAFLNSTQSRDEQLQVQMRCQRGEIKLLYIAPERLM-MESFLHH 134
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L + + AL A+DE HC+S+WGHDFRP+YR + +LR+ D+P++ALTATA
Sbjct: 135 LVQWQP-ALLAVDEAHCISQWGHDFRPEYRGIGLLRQYLP---------DVPIIALTATA 184
Query: 341 TIQVREDILKSLHMSKGTKFV-LTSFFRPNLRFSV 374
R DI+ L + T V ++SF RPN+R+++
Sbjct: 185 DNTTRHDIINQLALR--TPLVHISSFDRPNIRYTL 217
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 106/196 (54%), Gaps = 9/196 (4%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP ++L + + IIY +R + A+ L G+ AAY+A + + +V
Sbjct: 222 KPLDQLWLFIRGQKGKSGIIYCNSRSKVEETAERLGKRGLSIAAYHAGMDIATRAKVQDA 281
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F + L++VVAT+AFGMGI+K NVR ++H+ P+++E+YYQE GRAGRDG A VL+ +
Sbjct: 282 FQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAQAVLFYD 341
Query: 618 LSSMPTLLPSRRSEDQTKQAYRMLSDCFRYG-----MNTSCCRAKILVEYFGEDFSHEKC 672
+ M L RR D+ ++ + + + CR +L+ YFGE + C
Sbjct: 342 PADMAWL---RRCLDEKPESEQKAIESHKLNAMGAFAEAQTCRRLVLLNYFGEH-RQQAC 397
Query: 673 QLCDVCVDGPPEMKNL 688
CD+C+D P + L
Sbjct: 398 GNCDICLDPPKQYDGL 413
>gi|315127615|ref|YP_004069618.1| ATP-dependent DNA helicase [Pseudoalteromonas sp. SM9913]
gi|315016129|gb|ADT69467.1| ATP-dependent DNA helicase [Pseudoalteromonas sp. SM9913]
Length = 607
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 136/220 (61%), Gaps = 17/220 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K ++LK+ FG+S ++ Q + A + D LVL TG GKS+C+QIPAL+ V +VI
Sbjct: 14 KPETVLKQVFGYSEFRDGQSAVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVI 73
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ ++L GV A ++ + + V Q+ +G+ ++YV PE V++
Sbjct: 74 SPLISLMQDQVTQLQALGVKAAYVNNSLAREEQQLVYQQLHQGLIKLLYVAPEKVLQR-D 132
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L+RL+ ++LFAIDE HCVS WGHDFRP Y RL+ L++ F +P+MAL
Sbjct: 133 FLERLSHL-NVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFA---------HVPMMAL 182
Query: 337 TATATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSVK 375
TATA R DI++ L + + ++ T SF RPN+R++++
Sbjct: 183 TATADKATRFDIVEQLKLQQ--PYIHTGSFDRPNIRYTIE 220
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 101/176 (57%), Gaps = 17/176 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK IA+ L G+ AAAY+A + Q + V T F + +++VVAT+AFGMG
Sbjct: 242 IIYCTSRKRVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMG 301
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPS----- 627
I+K NVR ++HY P+S+EAYYQE GRAGRDG A+ ++Y A++ +
Sbjct: 302 INKPNVRFVLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQ 361
Query: 628 -RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
RR E+Q A ++ CR +IL+ YF E + E C CD+C++ P
Sbjct: 362 RRRVEEQRFNAMASFAEA-------QTCRRQILLNYFSE-YQREPCGNCDICLNPP 409
>gi|357060591|ref|ZP_09121359.1| ATP-dependent DNA helicase RecQ [Alloprevotella rava F0323]
gi|355375896|gb|EHG23164.1| ATP-dependent DNA helicase RecQ [Alloprevotella rava F0323]
Length = 608
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 124/213 (58%), Gaps = 16/213 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LKK+FG++S + Q E + L DC VL TG GKS+C+QIPA L + +V+SPLIS
Sbjct: 7 LKKYFGYNSFRPKQAEIIDTVLGGRDCFVLMPTGGGKSVCYQIPAALLPGLTIVVSPLIS 66
Query: 225 LMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L + G+ AC + S P ++++ + G Y ++Y+ PE L+ L
Sbjct: 67 LMKDQVESLLEAGIPACAINSSLPLEQSVQLQEACVNGAYKLVYLSPEA---LLASLHGW 123
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
I+L AIDE HC+S+WGHDFRP+Y +L +R + ++P+MALTATA
Sbjct: 124 ISRAKISLVAIDEAHCISQWGHDFRPEYTQLGEIRRDLP---------NVPMMALTATAD 174
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
REDIL+ L + ++SF RPNL +V
Sbjct: 175 KVTREDILQQLGL-HNPYISVSSFDRPNLSLTV 206
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 104/168 (61%), Gaps = 4/168 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK T S+A+ L GV+A +Y+A L + T F + ++++VAT+AFGMG
Sbjct: 232 IIYCMSRKTTESVAEKLTAKGVRALSYHAGLSADVRDKTQTAFINDDVQIIVATVAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR ++HY P+S+E+YYQE GRAGRDG AD +L+ N + + L R ++D +
Sbjct: 292 IDKSNVRWVVHYNLPKSIESYYQEIGRAGRDGDPADTLLFYNYADIIQL--ERFAQDSGQ 349
Query: 636 QAYRMLS-DCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
Q M + R S CR +IL+ YFGE+ S + C CDVC + P
Sbjct: 350 QNINMERLNRMREYAEASVCRRRILLNYFGEETSTD-CHNCDVCKNPP 396
>gi|357622484|gb|EHJ73945.1| putative blooms syndrome DNA helicase [Danaus plexippus]
Length = 551
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/209 (43%), Positives = 124/209 (59%), Gaps = 19/209 (9%)
Query: 154 GSDW--EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL 211
G D+ + + LK+ FG +S + QK+ ++A L HDC VL TG GKSLC+Q+PA+L
Sbjct: 332 GDDYPHSIPMMETLKEKFGLTSFRPNQKQVINATLLGHDCFVLMPTGGGKSLCYQLPAIL 391
Query: 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYV 266
T V +VISPL SLM DQ +KL + A LGS + K + ++YV
Sbjct: 392 TPGVTIVISPLRSLMLDQVNKLLALDIPAAHLGSDVTEAKSNYVYDDLNQQEPTIKLLYV 451
Query: 267 CPETV---IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANN 323
PE + + + L RL E + I+ F IDE HCVS+WGHDFRPDY++L++LR+ F
Sbjct: 452 TPEKIQSSPKFQETLTRLYEKQKISRFVIDEAHCVSQWGHDFRPDYQKLNLLRKKFP--- 508
Query: 324 LKSLKFDIPLMALTATATIQVREDILKSL 352
++ LMALTATAT +VR DIL L
Sbjct: 509 ------NVTLMALTATATKRVRTDILYQL 531
>gi|71906552|ref|YP_284139.1| ATP-dependent DNA helicase RecQ [Dechloromonas aromatica RCB]
gi|71846173|gb|AAZ45669.1| ATP-dependent DNA helicase RecQ [Dechloromonas aromatica RCB]
Length = 617
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 136/242 (56%), Gaps = 23/242 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG+ + + Q E + + D LVL TG GKSLC+QIPALL VV+SPLI
Sbjct: 22 VLRDVFGYPAFRGEQAEIIGHVASGGDALVLMPTGGGKSLCYQIPALLRPGCAVVVSPLI 81
Query: 224 SLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ + + GV A L S + VEQ G ++Y+ PE ++ R + L
Sbjct: 82 ALMQDQVDAMIQLGVKAACLNSTLDWREAQAVEQAIFSGNLDLVYIAPERLLLDRTLAML 141
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L+E+ +ALFAIDE HCVS+WGHDFRP+Y +LS L E + A +P +ALTA
Sbjct: 142 DSLSEAGKLALFAIDEAHCVSQWGHDFRPEYLQLSALHERYPA---------VPRIALTA 192
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTK 398
TA R +IL+ L + + F L+SF RPN+R++V + + QL+ T
Sbjct: 193 TADQATRNEILQRLGLGEARVF-LSSFDRPNIRYTVVEKDNAKK--------QLLTFLTG 243
Query: 399 KK 400
+K
Sbjct: 244 RK 245
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 8/188 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+ A++L G A Y+A LP + F + ++ ATIAFGMG
Sbjct: 250 IVYCLSRKKVEETAEWLSTQGYPALPYHAGLPAPERAANQRRFLREEGLIMCATIAFGMG 309
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR + H P+S+EAYYQE GRAGRDG ++ + + + L +R +E
Sbjct: 310 IDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGEPSEAWMTYGMQDV-ALQHARIAESGAA 368
Query: 636 QAYRMLSDCFRYGMNTSC----CRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEE 691
+ ++L + + C CR ++L+ YFGE+ E C CDVC + PPE+ + +
Sbjct: 369 EGQKILESQRLTALLSYCEAPRCRRQVLLNYFGEE--REPCGNCDVCTE-PPELWDGTQA 425
Query: 692 ANILMQVI 699
A + I
Sbjct: 426 AQKALSAI 433
>gi|430808837|ref|ZP_19435952.1| ATP-dependent DNA helicase RecQ [Cupriavidus sp. HMR-1]
gi|429498733|gb|EKZ97235.1| ATP-dependent DNA helicase RecQ [Cupriavidus sp. HMR-1]
Length = 615
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 133/220 (60%), Gaps = 21/220 (9%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVV 218
++LK+ FG+ + + Q E + DCLVL TG GKSLC+QIPALL + V +V
Sbjct: 6 AILKEVFGYHAFRGRQGEIIDHVAEGGDCLVLMPTGGGKSLCYQIPALLRQQAGHGVGIV 65
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLI 275
+SPLI+LM DQ + L++ GV A L S ++ VE+ L G I+YV PE RL+
Sbjct: 66 VSPLIALMQDQVAALTEAGVRAAVLNSTLSSSEASAVERDLLAGRLDILYVAPE---RLM 122
Query: 276 KP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
P L E + LFAIDE HCVS+WGHDFRP+Y +LSVL E F +P +
Sbjct: 123 TPRFLDLLERTRVGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------RVPRI 173
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA R++I++ L + + + F+ +SF RPN+R+ +
Sbjct: 174 ALTATADALTRQEIVERLALDEASVFI-SSFDRPNIRYRI 212
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 105/191 (54%), Gaps = 14/191 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH-TEFHENKLEVVVATIAFGM 574
I+Y +RK+ A +L G+ A Y+A + SQ+R+ H F E + V+VATIAFGM
Sbjct: 241 IVYCLSRKKVEDTAAWLSSHGINALGYHAGM-DSQVRQTHQARFREEEGIVMVATIAFGM 299
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT 634
GIDK +VR + H P+S+E YYQE GRAGRDG A+ + L ++ +R D++
Sbjct: 300 GIDKPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGD---VVQQKRMIDES 356
Query: 635 K--QAYRMLS----DCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
+ +A++ +S D T+ CR ++ YF E + E C CD C++ PP +
Sbjct: 357 EADEAHKRVSSSKLDALLGLCETAGCRRVRILAYFDE--TAEPCGNCDTCLE-PPSTWDG 413
Query: 689 KEEANILMQVI 699
EA + + +
Sbjct: 414 TREAQMALSCV 424
>gi|282898834|ref|ZP_06306821.1| ATP-dependent DNA helicase RecQ [Cylindrospermopsis raciborskii
CS-505]
gi|281196361|gb|EFA71271.1| ATP-dependent DNA helicase RecQ [Cylindrospermopsis raciborskii
CS-505]
Length = 719
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 130/222 (58%), Gaps = 15/222 (6%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
KK+FG+ + Q++ + L + D +V+ TG GKSLCFQ+PALL + VV+SPLI+
Sbjct: 10 FKKYFGYDQFRPGQRQIIEDALENRDLMVVMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 69
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L + ++A + S +V E+ + G ++YV PE ++ R + L
Sbjct: 70 LMQDQVEALRNNNISATLINSSLTTYQVRSREEAIMNGKVKLLYVAPERLVSERFLPILD 129
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ E G+A F IDE HCVS+WGHDFRP+YR+L +LR+ F +P +ALTAT
Sbjct: 130 VVKEKFGLANFVIDEAHCVSEWGHDFRPEYRQLILLRKRFS---------HVPTIALTAT 180
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
AT +VR DI++ L + K + SF R NL + V+ +S
Sbjct: 181 ATDRVRADIIQQLGL-KQPAVHIASFNRQNLYYEVRPKNRNS 221
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 123/247 (49%), Gaps = 17/247 (6%)
Query: 489 SFERTDLL--------NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAA 540
SF R +L N E L +++E +G IIY TRK + L + A
Sbjct: 204 SFNRQNLYYEVRPKNRNSYGEILEIIKE--NEGSGIIYCLTRKNVDELTLKLQNSQIAAL 261
Query: 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A L + + T F + + ++VATIAFGMGI+K +VR +IH P++LE+YYQE+
Sbjct: 262 PYHAGLVDYERAKNQTRFIRDDVRIMVATIAFGMGINKPDVRFVIHCDLPRNLESYYQES 321
Query: 601 GRAGRDGHLADCVLYANLSSMPTLLPS--RRSEDQTKQ-AYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG + C L+ + + T+ S ++++ Q + A + L Y T CR
Sbjct: 322 GRAGRDGEPSRCTLFFSFGDVKTIEWSIGKKTDPQEQLIAKQQLRQVIDYAEGTD-CRRT 380
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYS 717
I + YFGE F C CD C P +++ EA + +A E+ M+ +
Sbjct: 381 IQLGYFGERFPGS-CANCDNC-RYPKPLQDWTVEAMKFLSCVARCQEKY-GMNYIIDVLR 437
Query: 718 GIKKQKF 724
G K QK
Sbjct: 438 GTKNQKI 444
>gi|126179385|ref|YP_001047350.1| ATP-dependent DNA helicase RecQ [Methanoculleus marisnigri JR1]
gi|125862179|gb|ABN57368.1| ATP-dependent DNA helicase RecQ [Methanoculleus marisnigri JR1]
Length = 605
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 130/217 (59%), Gaps = 17/217 (7%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
++ L+K+FG++S Q+E + A LA D L + ATG GKSLC+Q+PAL+ G + VV+SP
Sbjct: 5 HTALEKYFGYTSFLPHQEEIVDAVLAGRDVLAVMATGGGKSLCYQLPALVFGGLTVVVSP 64
Query: 222 LISLMHDQCSKLSKHGVTACFLGS--GQPDNK-VEQKALRGMYSIIYVCPETVIRLIKP- 277
LI+LM DQ L +G+ A + S G + K VE+ L G I+YV PE R ++P
Sbjct: 65 LIALMKDQVDGLRANGIPAATINSSLGYGEQKIVERVILEGRIRILYVSPE---RAVQPF 121
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L + L AIDE HC+S WGH+FRP+YRRL VL+E F +P++ALT
Sbjct: 122 FLSLIAKADVRLIAIDEAHCISMWGHNFRPEYRRLRVLKERFPT---------VPVIALT 172
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ATA V+ DI L +S +FV SF R NL + V
Sbjct: 173 ATAIPAVQNDIAVELALSNPARFV-GSFNRKNLTYRV 208
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 97/168 (57%), Gaps = 7/168 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
IIY ++K T+ +AK L G A Y+A LP + +R H E F + ++ AT+AFGM
Sbjct: 231 IIYCFSQKATVELAKKLQDKGFSALPYHAGLPDA-VRAEHQEAFSRGDVAIICATVAFGM 289
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--LPSRRSED 632
GIDK +VR +IH P+ +E+YYQE GRAGRDG DC+LY + T+ + + D
Sbjct: 290 GIDKPDVRFVIHTDLPKDIESYYQETGRAGRDGEPGDCILYYSRGDYGTIRYIIEKEGAD 349
Query: 633 QTKQ--AYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVC 678
T++ AYR + Y T CR K L+ YFGE + E+C CD C
Sbjct: 350 ATQKDVAYRKVGAMLDY-CETPGCRRKFLLAYFGESYPEERCGACDRC 396
>gi|325680519|ref|ZP_08160067.1| ATP-dependent DNA helicase RecQ [Ruminococcus albus 8]
gi|324107818|gb|EGC02086.1| ATP-dependent DNA helicase RecQ [Ruminococcus albus 8]
Length = 742
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/225 (41%), Positives = 126/225 (56%), Gaps = 14/225 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+L+ FGH+ Q+ + A L+ D + TG+GKSLC+QIPAL+ + +VISPL
Sbjct: 9 SVLRDFFGHTDFHEGQEPLIDALLSGRDAAGIMPTGAGKSLCYQIPALMLDGITIVISPL 68
Query: 223 ISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ + L + GV A +L S Q N A+RGMY +IYV PE + +
Sbjct: 69 ISLMKDQVNSLIQSGVRAAYLNSSLTPQQYNTALSNAMRGMYKLIYVAPERLC--TQSFL 126
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
LA + I+L A+DE HCVS+WG DFRP Y R+ L L + + A TAT
Sbjct: 127 ELARTVKISLVAVDEAHCVSQWGQDFRPHYMRIPEF--------LSQLPYRPTVGAFTAT 178
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRAS 384
AT QVREDI++ L + + V T F R NL F V H + A+
Sbjct: 179 ATDQVREDIIRLLCLREPL-CVTTGFDRKNLYFGVLHERNKYEAA 222
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 104/198 (52%), Gaps = 19/198 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY TRK +++ L G+ Y+A L + ++ +F +++E++ AT AFGMG
Sbjct: 235 IIYCSTRKAVEEVSEKLTADGIPCTRYHAGLSPEERKKNQDDFIYDRVELIAATNAFGMG 294
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV-LYANLSSMPTLLPSRRS---- 630
IDK NV ++HY P+++E YYQEAGRAGRDG A C+ LY+ M S
Sbjct: 295 IDKSNVGLVLHYNMPKNIENYYQEAGRAGRDGSEAKCILLYSPKDVMTNKFLIENSNDNP 354
Query: 631 --EDQTKQAYRMLSDCFRYGM-----NTSCCRAKILVEYFGEDFSHEKCQLCDVCVD--G 681
+D+T + R D + GM NT C + +++YFGE KC C C + G
Sbjct: 355 DLDDETAEQLRR-RDYAKLGMMSDYCNTGRCLRQFILDYFGE---KRKCT-CGNCSNCSG 409
Query: 682 PPEMKNLKEEANILMQVI 699
E+ ++ EA ++ I
Sbjct: 410 ETELTDVTLEAQKILSCI 427
>gi|83749347|ref|ZP_00946343.1| ATP-dependent DNA helicase recQ [Ralstonia solanacearum UW551]
gi|421895909|ref|ZP_16326308.1| atp-dependent dna helicase protein [Ralstonia solanacearum MolK2]
gi|83723972|gb|EAP71154.1| ATP-dependent DNA helicase recQ [Ralstonia solanacearum UW551]
gi|206587074|emb|CAQ17658.1| atp-dependent dna helicase protein [Ralstonia solanacearum MolK2]
Length = 637
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 135/228 (59%), Gaps = 23/228 (10%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK- 214
D ++L FG+S+ + Q + ++ DCLVL TG GKSLC+QIPAL+ +
Sbjct: 17 DTAAATRAVLHDVFGYSAFRGPQADIVTHVADGGDCLVLMPTGGGKSLCYQIPALVRHRR 76
Query: 215 ---VVVVISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCP 268
+V+SPLI+LM DQ + L + GV A +L S G +VE+ G ++YV P
Sbjct: 77 GQGAGIVVSPLIALMQDQVAALEEAGVRAAYLNSALTGTEAAQVERDLAAGRLDLVYVAP 136
Query: 269 ETVIRLIKP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
E RL+ P L+ L SR I LFAIDE HCVS+WGHDFRP+Y +LSVL E F
Sbjct: 137 E---RLMTPRFLELLERSR-IGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP------ 186
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P +ALTATA R++I++ L + G + L+SF RPN+R+++
Sbjct: 187 ---HVPRIALTATADAVTRDEIVERLALG-GERVFLSSFDRPNIRYTI 230
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 116/234 (49%), Gaps = 19/234 (8%)
Query: 489 SFERTDLLNKPAERLSMLQEPL---------EDG--LTIIYVPTRKETLSIAKYLCGFGV 537
SF+R ++ E+ S Q+ L EDG I+Y +RK+ A++L G+
Sbjct: 220 SFDRPNIRYTIVEKDSARQQLLRFIRAEHLGEDGCDAGIVYCLSRKKVEETAQWLAEQGI 279
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
+A Y+A + R F + + V+VATIAFGMGIDK +VR + H P+SLE YY
Sbjct: 280 RALPYHAGMDVETRARHQAIFRKEEGVVMVATIAFGMGIDKPDVRFVAHLDLPKSLEGYY 339
Query: 598 QEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCC 654
QE GRAGRDG A+ + A++ ++ ++D K+ D ++ C
Sbjct: 340 QETGRAGRDGLPANAWMAYGLADVVQQRRMIDESDADDVHKRVSTAKLDALLGLCESAGC 399
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNS 708
R L+ YFGE S + C CD C+ PP+ + EA + + + Y Q S
Sbjct: 400 RRVALLAYFGE--SSQPCGNCDTCLS-PPQTWDATREAQMALSCV--YRVQQAS 448
>gi|312379036|gb|EFR25440.1| hypothetical protein AND_09184 [Anopheles darlingi]
Length = 532
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 132/241 (54%), Gaps = 21/241 (8%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
DW KV L + F + Q ++A LA HD L+LA TG GKSLCFQ+PAL+T +
Sbjct: 71 DWSAKVRKTLSEVFHLQDFRPQQLRTINALLAGHDVLLLAPTGGGKSLCFQLPALITPGL 130
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS-------IIYVCP 268
VVISPL+SLM DQ L K + A L S ++ + LR M + ++YV P
Sbjct: 131 TVVISPLVSLMEDQVWSLQKLKIAAKLLCSTTERSEANE-ILRSMANPSQSTVKLLYVTP 189
Query: 269 ETVI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLK 325
E + R + LQ+ + + FAIDEVHC S+WGHDFRPDY+ L VL+E F
Sbjct: 190 ERMSKSKRFMSALQKCFSNGQLDRFAIDEVHCCSQWGHDFRPDYKYLGVLKELFPK---- 245
Query: 326 SLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASY 385
IP++ +TATAT V +D+ K L + FV SF RPNL + V S + Y
Sbjct: 246 -----IPVLGVTATATAAVIKDVQKMLRIPNSILFV-ASFNRPNLYYHVLEKPLSKKDQY 299
Query: 386 K 386
+
Sbjct: 300 E 300
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 100/179 (55%), Gaps = 16/179 (8%)
Query: 489 SFERTDL----LNKPAERL-------SMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGV 537
SF R +L L KP + S+L++ I+Y + K+ I++ L G+
Sbjct: 278 SFNRPNLYYHVLEKPLSKKDQYEVLESLLEKRFHKQSGIVYTFSIKDAEEISEELRERGL 337
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
K A Y+A+LP + ++H + N+L+ V+AT+AFGMGIDK +VR +IH+ +S+E +Y
Sbjct: 338 KVAPYHATLPAADRTKIHQLWIANRLQAVIATVAFGMGIDKPDVRFVIHHTLSKSMENFY 397
Query: 598 QEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQ-AYRMLSDCFRYGMNTSCCR 655
QE GRAGRDG ADC+L + S M + SE Q AY M+ C +N S CR
Sbjct: 398 QETGRAGRDGQPADCILLYHFSDMFRISTMMFSEYTGLQNAYAMVDYC----INRSECR 452
>gi|90419404|ref|ZP_01227314.1| putative ATP-dependent DNA helicase [Aurantimonas manganoxydans
SI85-9A1]
gi|90336341|gb|EAS50082.1| putative ATP-dependent DNA helicase [Aurantimonas manganoxydans
SI85-9A1]
Length = 632
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 127/214 (59%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FGH++ + Q+ + +A D +VL TG+GKS+C+QIP+L V +V+SPLI
Sbjct: 38 MLRTVFGHAAFRGQQEAVVDQVVAGGDAVVLFPTGAGKSVCYQIPSLCRPGVGIVVSPLI 97
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LMHDQ L + GV A L S D + V L G ++YV PE ++ + +R
Sbjct: 98 ALMHDQVEGLRQAGVNAASLNSSMSDEERDTVRADLLAGRLDLLYVTPERIVS--EGFRR 155
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
IALFAIDE HCVS WGHDFRP+YR L L ++F + +P +ALTATA
Sbjct: 156 TLSRVRIALFAIDEAHCVSAWGHDFRPEYRLLETLADDFPS---------VPRIALTATA 206
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
R DI++ L ++ + +TSF RPN+R+++
Sbjct: 207 DPTTRADIIERLRLTDAPVY-MTSFDRPNIRYAI 239
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 112/233 (48%), Gaps = 19/233 (8%)
Query: 489 SFERTDLL------NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ + P ++L E E I+Y +R++ A +L G++A Y
Sbjct: 229 SFDRPNIRYAIVERDNPKKQLLSFLERHEGASGIVYCLSRRKVEETAAWLNTQGIRALPY 288
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L S F + +VAT+AFGMGIDK +VR + H P S+EAYYQE GR
Sbjct: 289 HAGLDASVRAANQAAFLNEENLCLVATVAFGMGIDKPDVRFVAHLDLPSSVEAYYQETGR 348
Query: 603 AGRDGHLADCVLYANLSSMPTLLPSRR------SEDQTKQAYRMLSDCFRYGMNTSCCRA 656
AGRDG +D + M ++ RR SE+ K+ R D T+ CR
Sbjct: 349 AGRDGQPSDAWM---AYGMQDVVQRRRMIDQGGSEETIKRVERAKLDALLAICETADCRR 405
Query: 657 KILVEYFGEDFSHE-KCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNS 708
++ +FGE HE +C CD C+ P E + E A L+ + E+ S
Sbjct: 406 AAILAHFGE--HHEGRCGNCDTCLS-PVETWDGTEAAVKLLAAVYRTGERFGS 455
>gi|415769435|ref|ZP_11484223.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|348657542|gb|EGY75131.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D17P-2]
Length = 265
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 132/214 (61%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ S + Q+E ++A L DCLV+ ATG+GKSLC+QIPAL +V+SPLI
Sbjct: 34 VLHSVFGYQSFRKGQQEIINAVLNGQDCLVIMATGTGKSLCYQIPALCFDGTTLVVSPLI 93
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +GV A +L S Q +V+ +A+ G ++Y+ PE V + +
Sbjct: 94 SLMKDQVDQLRANGVEADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEKV--MTSSFFQ 151
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
++ AIDE HC+S+WGHDFRP+Y +L L+ +F ++P+MALTATA
Sbjct: 152 FISLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGSFP---------NVPIMALTATA 202
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++DIL++L +++ F + SF RPN+R+++
Sbjct: 203 DQTTQQDILQNLRLNR-PHFYVGSFDRPNIRYTL 235
>gi|345879659|ref|ZP_08831273.1| hypothetical protein Rifp1Sym_fy00030 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344223322|gb|EGV49811.1| hypothetical protein Rifp1Sym_fy00030 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 612
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 136/228 (59%), Gaps = 19/228 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L++ FG+ + Q E + D LV+ TG GKSLC+QIP+LL V +++SPLI
Sbjct: 10 ILRETFGYQQFRGQQAEIIQQLSEGGDALVIMPTGGGKSLCYQIPSLLRDGVGIIVSPLI 69
Query: 224 SLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKP--L 278
+LM DQ + L++ G+ A FL S Q ++E + G ++Y+ PE RL++P L
Sbjct: 70 ALMQDQVAALNELGIQAAFLNSTLEPQAAAQIETELRSGTLDLLYLAPE---RLLQPRTL 126
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+ LA+S IALFAIDE HCVS+WGHDFRP+Y +LS+L+E F IP +ALTA
Sbjct: 127 KLLAQS-PIALFAIDEAHCVSQWGHDFRPEYIQLSLLQERFP---------QIPRIALTA 176
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYK 386
TA R +I L + + +FV + F RPN+R+ + + A ++
Sbjct: 177 TADETTRREIATRLGLEQAPQFV-SGFDRPNIRYHIGQHERQRDALWQ 223
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 97/178 (54%), Gaps = 17/178 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH-TEFHENKLEVVVATIAFGM 574
I+Y +RK+ S++++L G A Y+A LP QLR H F + + ++VATIAFGM
Sbjct: 235 IVYCLSRKKVESVSEWLSNKGRSALPYHAGLPH-QLREQHQARFLKEEGVIIVATIAFGM 293
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--------LP 626
GIDK +VR + H P+S+EAYYQE GRAGRDG A+ + L ++ TL P
Sbjct: 294 GIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGEPANAWMSYGLQNVITLRQMIEQSDAP 353
Query: 627 SRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ + ++ ML C + CR + L+ YF +D C CD C+ PPE
Sbjct: 354 EAQQTVERRKLDAMLGLC-----EITSCRRQALIAYF-DDQLDAACGNCDNCLL-PPE 404
>gi|398992136|ref|ZP_10695179.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM24]
gi|399016533|ref|ZP_10718747.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM16]
gi|398105039|gb|EJL95160.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM16]
gi|398133796|gb|EJM22978.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM24]
Length = 709
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 128/219 (58%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIKRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + +S IALFAIDE HCVS+WGHDFRP+Y +L L E F D+P +A
Sbjct: 121 PRMLSFLQSLNIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I+ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVTRLHLQNAERF-LSSFDRPNIFYRI 209
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 109/204 (53%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +L G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLAERRSDA-GIVYCLSRKKVEEVAAFLSEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP ++LR + + F + ++VAT+AFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NELRAFNQKRFLNEEGLIMVATVAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GR GRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 317 GRGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED E C CD CVDG
Sbjct: 377 TLLAYFDEDMP-EPCGHCDNCVDG 399
>gi|421890438|ref|ZP_16321299.1| ATP-dependent DNA helicase [Ralstonia solanacearum K60-1]
gi|378964211|emb|CCF98047.1| ATP-dependent DNA helicase [Ralstonia solanacearum K60-1]
Length = 637
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 135/228 (59%), Gaps = 23/228 (10%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK- 214
D ++L FG+S+ + Q + ++ DCLVL TG GKSLC+QIPAL+ +
Sbjct: 17 DTAAATRAVLHDVFGYSAFRGPQADIVTHVADGGDCLVLMPTGGGKSLCYQIPALVRHRR 76
Query: 215 ---VVVVISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCP 268
+V+SPLI+LM DQ + L + GV A +L S G +VE+ G ++YV P
Sbjct: 77 GQGAGIVVSPLIALMQDQVAALEEAGVRAAYLNSALTGAEAAQVERDLAAGRLDLVYVAP 136
Query: 269 ETVIRLIKP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
E RL+ P L+ L SR I LFAIDE HCVS+WGHDFRP+Y +LSVL E F
Sbjct: 137 E---RLMTPRFLELLERSR-IGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP------ 186
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P +ALTATA R++I++ L + G + L+SF RPN+R+++
Sbjct: 187 ---HVPRIALTATADAVTRDEIVERLALG-GERVFLSSFDRPNIRYTI 230
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 116/234 (49%), Gaps = 19/234 (8%)
Query: 489 SFERTDLLNKPAERLSMLQEPL---------EDG--LTIIYVPTRKETLSIAKYLCGFGV 537
SF+R ++ E+ S Q+ L EDG I+Y +RK+ A++L G+
Sbjct: 220 SFDRPNIRYTIVEKDSARQQLLRFIRAEHLGEDGCDAGIVYCLSRKKVEETAQWLAEQGI 279
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
+A Y+A + R F + + V+VATIAFGMGIDK +VR + H P+SLE YY
Sbjct: 280 RALPYHAGMDVETRARHQAIFRKEEGVVMVATIAFGMGIDKPDVRFVAHLDLPKSLEGYY 339
Query: 598 QEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCC 654
QE GRAGRDG A+ + A++ ++ ++D K+ D ++ C
Sbjct: 340 QETGRAGRDGLPANAWMAYGLADVVQQRRMIDESDADDVHKRVSTAKLDALLGLCESAGC 399
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNS 708
R L+ YFGE S + C CD C+ PP+ + EA + + + Y Q S
Sbjct: 400 RRVALLAYFGE--SSQPCGNCDTCLS-PPQTWDATREAQMALSCV--YRVQQAS 448
>gi|315038238|ref|YP_004031806.1| ATP-dependent DNA helicase RecQ [Lactobacillus amylovorus GRL 1112]
gi|312276371|gb|ADQ59011.1| ATP-dependent DNA helicase RecQ [Lactobacillus amylovorus GRL 1112]
Length = 588
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 131/221 (59%), Gaps = 14/221 (6%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK+ FG+ S + QK+ + L+ + L + TG+GKSLC+Q+PAL+ V +VISPLI
Sbjct: 6 VLKQTFGYDSFRPGQKKVIDLVLSKQNVLAVMPTGAGKSLCYQVPALMNAGVTLVISPLI 65
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ L ++G+ A L S P N + ++A G +IY+ PE + I +
Sbjct: 66 SLMKDQIDTLKQNGINAAALNSATPQEEVNPILRQAYEGKIKLIYITPERL--AIDYFRY 123
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
I L A+DE HC+S+WGHDFRP YR+L + + SLK ++ALTATA
Sbjct: 124 QLNFLDIDLVAVDEAHCISQWGHDFRPAYRQL--------LDGINSLKSRPNILALTATA 175
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
T V++DI + L++ K ++TSF RPNL F V +S ++
Sbjct: 176 TPAVQDDICEQLNIPK-QNMIITSFARPNLSFKVVNSPQNT 215
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 22/207 (10%)
Query: 489 SFERTDL----LNKP-------AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGV 537
SF R +L +N P A+ + M P E G IIY TRK+ S+ YL G+
Sbjct: 198 SFARPNLSFKVVNSPQNTPLYIAQYIKM--HPDEAG--IIYTNTRKKVESLTDYLAKKGI 253
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
AY+ + + V F ++++V+VAT AFGMGIDK NVR +IH +++E+YY
Sbjct: 254 SVGAYHGGMETKERDEVQEAFQFDQVQVIVATNAFGMGIDKSNVRFVIHASSARNIESYY 313
Query: 598 QEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQ-AYRMLSDCFRYGMNTSC 653
QEAGRAGRDG ++ ++ +L + ++++ ++ Y+ L Y NT
Sbjct: 314 QEAGRAGRDGEESEAIMIYHPGDLRQYRFFIDESTADEKYRELQYQKLQAITDYA-NTGE 372
Query: 654 CRAKILVEYFGEDFSHEKCQLCDVCVD 680
C + +V YFG+D E C C C++
Sbjct: 373 CLQQFIVRYFGQDC--EPCGKCSNCLN 397
>gi|221069610|ref|ZP_03545715.1| ATP-dependent DNA helicase RecQ [Comamonas testosteroni KF-1]
gi|220714633|gb|EED70001.1| ATP-dependent DNA helicase RecQ [Comamonas testosteroni KF-1]
Length = 636
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 141/252 (55%), Gaps = 28/252 (11%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL----LTGKVVV 217
S+L+ FG+ + Q+ +S + D LVL TG GKSLC+Q+PA+ L V +
Sbjct: 5 QSILQAVFGYEQFRGPQQAIVSHVINGGDALVLMPTGGGKSLCYQVPAIARQQLGHGVTI 64
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR---GMYSIIYVCPETV--I 272
V+SPLI+LMHDQ L + G++A +L S ++ ++ LR G +++Y PE +
Sbjct: 65 VVSPLIALMHDQVGALHEAGISAAYLNSTLSYDETQEVELRLQSGDITLLYAAPERLNTP 124
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
R + L L ++LFAIDE HCVS+WGHDFRP+YR LSVL + + D+P
Sbjct: 125 RFLGLLDDLHAQGKLSLFAIDEAHCVSQWGHDFRPEYRALSVLHQRYA---------DVP 175
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQL 392
+ALTATA R DI++ L + F+ +SF RPN+R+ R + KKD
Sbjct: 176 RIALTATADALTRADIIERLQLEAAQHFI-SSFDRPNIRY---------RIAEKKDVSNQ 225
Query: 393 IDIYTKKKKTGE 404
+ + +++ GE
Sbjct: 226 LLRFIEREHEGE 237
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 115/243 (47%), Gaps = 25/243 (10%)
Query: 489 SFERTDLLNKPAER-------LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + AE+ L ++ E ++Y +RK +A+ L G+ A
Sbjct: 206 SFDRPNIRYRIAEKKDVSNQLLRFIEREHEGEAGVVYCQSRKRVEELAQTLVQNGINALP 265
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A LP+ + F V+VATIAFGMGI+K +VR + H P+++E YYQE G
Sbjct: 266 YHAGLPQDMRQNHQDRFLREDGVVMVATIAFGMGINKPDVRFVAHVDMPKNIEGYYQETG 325
Query: 602 RAGRDGHLADCVLYANLSSMPT---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG AD + LS + ++ +E+Q KQ R D + CR
Sbjct: 326 RAGRDGLPADAWMAYGLSDVVNQRRMIDESPAEEQFKQVMRGKLDALLGLAEATDCRRVR 385
Query: 659 LVEYFGEDFSHE--------------KCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNE 704
L+ YFGE + E C CD C++ PP + + + A L+ I +E
Sbjct: 386 LLAYFGEQYGQEPSLDGKPLQAVARTHCGNCDNCLE-PPALWDGTDAARKLLSTIFRVHE 444
Query: 705 QSN 707
S
Sbjct: 445 ASG 447
>gi|427707114|ref|YP_007049491.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7107]
gi|427359619|gb|AFY42341.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7107]
Length = 718
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 128/216 (59%), Gaps = 15/216 (6%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK HFG+ + Q++ + L + D LV+ TG GKSLCFQ+PAL+ + VV+SPLI+
Sbjct: 11 LKYHFGYDQFRPGQRKIIEDALQNRDLLVVMPTGGGKSLCFQLPALVKKGLTVVVSPLIA 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L + ++A FL S +V E+ L G ++YV PE ++ R + L
Sbjct: 71 LMQDQVEALRNNNISATFLNSSLNPYQVRSREEAILNGKVRLLYVAPERLMSERFLPFLD 130
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ GI+ FAIDE HCVS+WGHDFRP+YR+L LR + +P++ALTAT
Sbjct: 131 LVHHQVGISTFAIDEAHCVSEWGHDFRPEYRQLRSLRSRYP---------HVPMIALTAT 181
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
AT +VR DI++ + + K + SF R NL + V+
Sbjct: 182 ATERVRSDIIQQIGL-KQPSIHIASFNRQNLYYEVR 216
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 137/275 (49%), Gaps = 17/275 (6%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
AE L +++E DG IIY TRK+ + L V AY+A L + + T F
Sbjct: 224 AELLELIREI--DGSAIIYCLTRKKVDELTFKLQNDKVSVLAYHAGLSDEERSKNQTRFI 281
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
+ V+VATIAFGMGI+K +VR +IH+ P++LE+YYQE+GRAGRDG + C ++ +
Sbjct: 282 RDDARVMVATIAFGMGINKPDVRLVIHFDIPRNLESYYQESGRAGRDGEPSRCTIFFSFG 341
Query: 620 SMPTLLPS-RRSEDQTKQ--AYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCD 676
+ T+ S + D +Q A + L Y T CR I + YFGE F C CD
Sbjct: 342 DIKTIEWSINQKTDAQEQLIAKQQLRQMIDYAEGTD-CRRTIQLSYFGERFLG-NCANCD 399
Query: 677 VCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSK 736
C P +++ EA + +A E+ + D + G K QK + K+
Sbjct: 400 NC-RHPKPVEDWTIEAMKFLSCVARCKERFGMLHIID-VLRGAKNQKITQYEHDKLSTYG 457
Query: 737 I-REQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
I +++S + WR L R + ++G + + D
Sbjct: 458 IGKDRSVEE-------WRMLGRSLLHQGLLEQTSD 485
>gi|301619865|ref|XP_002939304.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Xenopus
(Silurana) tropicalis]
Length = 1431
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 123/219 (56%), Gaps = 12/219 (5%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWL-AHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
S LK +FGHSS K Q + + + L D LV+ ATG GKSLC+Q + T + +VI P
Sbjct: 477 SCLKTYFGHSSFKPVQWKVIHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVICP 536
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LISLM DQ +L + +CFLGS Q N V Q G +IY+ PE I LQ L
Sbjct: 537 LISLMEDQVLQLEMSNIPSCFLGSAQSKN-VLQDVKAGRMRVIYMTPEFCSGGISLLQDL 595
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
GI L AIDE HC+S+WGHDFR YR L +LK + +P++ALTATA+
Sbjct: 596 DNRYGITLIAIDEAHCISEWGHDFRSAYRSL---------GSLKRMLPTVPIVALTATAS 646
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380
+REDI KSL + + TSF RPNL V T+
Sbjct: 647 PSIREDISKSLSL-HNPQITCTSFDRPNLYLDVAKKTTN 684
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 156/323 (48%), Gaps = 44/323 (13%)
Query: 479 SPHRDRDTDRSFERTDLLNKPAERLSMLQEPLE-------------DGLTIIYVPTRKET 525
S H + T SF+R +L A++ + + L+ +G TI+Y PTRK +
Sbjct: 658 SLHNPQITCTSFDRPNLYLDVAKKTTNISTDLQQFLIKKQGSGWEFEGATIVYCPTRKTS 717
Query: 526 LSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRII 585
+ L G+ Y+A + Q R VH F ++++ VVAT+AFGMGI+K ++R++I
Sbjct: 718 EQVTAELTKLGIACGTYHAGMGIKQRRDVHHRFMRDEIQCVVATVAFGMGINKPDIRKVI 777
Query: 586 HYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSRRSEDQTKQAYRMLS 642
HYG P+ +E+YYQE GRAGRDG + C L+ A+++ +L + + +ML+
Sbjct: 778 HYGAPKEMESYYQEIGRAGRDGLPSCCHALWTQADINFNRHMLGEIPNNSFREYKLKMLT 837
Query: 643 DCFRYGMNTSCCRAKILVEYFGED---------FSHEKCQLCDVC-------VDGPPEMK 686
+Y +N+S CR KI++ +F + EKC CD C +
Sbjct: 838 KMEKY-LNSSNCRRKIILSHFEDKQLRKASSGIMGTEKC--CDNCKTRLRFNISINDTED 894
Query: 687 NLKEEANILMQVIAAYNEQSNSMDDDDGI--YSGIKKQKFMDRPNLKMFVSKIREQSQKY 744
NL+E + I+A + + G Q+ DR S ++Q++ +
Sbjct: 895 NLQEFGQQAYKFISAVDILGQKFGTGVPVLFLRGSTSQRLPDRFRHHPLFSCGKDQTEAF 954
Query: 745 LATDLLWWRGLARIMENKGYIRE 767
W+ LAR + ++GY++E
Sbjct: 955 -------WKVLARQLISEGYLQE 970
>gi|94312259|ref|YP_585469.1| ATP-dependent DNA helicase [Cupriavidus metallidurans CH34]
gi|93356111|gb|ABF10200.1| ATP-dependent DNA helicase [Cupriavidus metallidurans CH34]
Length = 630
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 133/220 (60%), Gaps = 21/220 (9%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVV 218
++LK+ FG+ + + Q E + DCLVL TG GKSLC+QIPALL + V +V
Sbjct: 21 AILKEVFGYHAFRGRQGEIIDHVAEGGDCLVLMPTGGGKSLCYQIPALLRQQAGHGVGIV 80
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLI 275
+SPLI+LM DQ + L++ GV A L S ++ VE+ L G I+YV PE RL+
Sbjct: 81 VSPLIALMQDQVAALTEAGVRAAVLNSTLSSSEASAVERDLLAGRLDILYVAPE---RLM 137
Query: 276 KP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
P L E + LFAIDE HCVS+WGHDFRP+Y +LSVL E F +P +
Sbjct: 138 TPRFLDLLERTRVGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------RVPRI 188
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA R++I++ L + + + F+ +SF RPN+R+ +
Sbjct: 189 ALTATADALTRQEIVERLALDEASVFI-SSFDRPNIRYRI 227
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 105/191 (54%), Gaps = 14/191 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH-TEFHENKLEVVVATIAFGM 574
I+Y +RK+ A +L G+ A Y+A + SQ+R+ H F E + V+VATIAFGM
Sbjct: 256 IVYCLSRKKVEDTAAWLSSHGINALGYHAGM-DSQIRQTHQARFREEEGIVMVATIAFGM 314
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT 634
GIDK +VR + H P+S+E YYQE GRAGRDG A+ + L ++ +R D++
Sbjct: 315 GIDKPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGD---VVQQKRMIDES 371
Query: 635 K--QAYRMLS----DCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
+ +A++ +S D T+ CR ++ YF E + E C CD C++ PP +
Sbjct: 372 EADEAHKRVSSSKLDALLGLCETAGCRRVRILAYFDE--TAEPCGNCDTCLE-PPSTWDG 428
Query: 689 KEEANILMQVI 699
EA + + +
Sbjct: 429 TREAQMALSCV 439
>gi|317057588|ref|YP_004106055.1| ATP-dependent DNA helicase RecQ [Ruminococcus albus 7]
gi|315449857|gb|ADU23421.1| ATP-dependent DNA helicase RecQ [Ruminococcus albus 7]
Length = 738
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 123/218 (56%), Gaps = 16/218 (7%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+L+ FGH+ + Q + A L+ HD + + TG+GKS+C+QIPAL+ + +VISPL
Sbjct: 9 SVLRDFFGHTDFRGGQLPLIDALLSGHDAVGIMPTGAGKSMCYQIPALMLDGITIVISPL 68
Query: 223 ISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKP-L 278
ISLM DQ + L + GV A +L S Q N A RGMY +IYV PE RL P
Sbjct: 69 ISLMKDQVNSLIQSGVRAAYLNSSLTMQQYNTALANASRGMYKLIYVAPE---RLCTPSF 125
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
LA + I+L A+DE HCVS+WG DFRP Y R+S L L + + A TA
Sbjct: 126 MELARNVRISLVAVDEAHCVSQWGQDFRPHYLRISEF--------LSQLPYRPTVGAFTA 177
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
TAT QVR DI + L + V T F R NL F V H
Sbjct: 178 TATDQVRADISRLLGLDDPV-CVTTGFDRENLYFGVTH 214
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 103/200 (51%), Gaps = 23/200 (11%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY TRK +++ L G+ Y+A L + ++ +F ++++++ AT AFGMG
Sbjct: 235 IIYCATRKAVDEVSEKLTADGIPCTRYHAGLSAEERKKNQDDFIYDRVDLIAATNAFGMG 294
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPSRRS-- 630
IDK NV ++HY P+++E YYQEAGRAGRDG A C+L + + T L+ + R
Sbjct: 295 IDKSNVSFVLHYNMPKNIENYYQEAGRAGRDGSEAKCILLYSAKDIVTNKFLIENSRDNS 354
Query: 631 --EDQTKQAYR---------MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+D T + R M C NT C + +++YFGE C C C+
Sbjct: 355 ELDDDTSELVRKRDLQKLRSMTDYC-----NTGRCLRQFILDYFGEK-RKCTCGNCSNCL 408
Query: 680 DGPPEMKNLKEEANILMQVI 699
G E+ ++ +A ++ +
Sbjct: 409 -GETELTDITVDAQKILSCV 427
>gi|345863268|ref|ZP_08815480.1| ATP-dependent DNA helicase RecQ [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345125729|gb|EGW55597.1| ATP-dependent DNA helicase RecQ [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 608
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 136/228 (59%), Gaps = 19/228 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L++ FG+ + Q E + D LV+ TG GKSLC+QIP+LL V +++SPLI
Sbjct: 10 ILRETFGYQQFRGQQAEIIQQLSEGGDALVIMPTGGGKSLCYQIPSLLRDGVGIIVSPLI 69
Query: 224 SLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKP--L 278
+LM DQ + L++ G+ A FL S Q ++E + G ++Y+ PE RL++P L
Sbjct: 70 ALMQDQVAALNELGIQAAFLNSTLEPQAAAQIETELRSGTLDLLYLAPE---RLLQPRTL 126
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+ LA+S IALFAIDE HCVS+WGHDFRP+Y +LS+L+E F IP +ALTA
Sbjct: 127 KLLAQS-PIALFAIDEAHCVSQWGHDFRPEYIQLSLLQERFP---------QIPRIALTA 176
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYK 386
TA R +I L + + +FV + F RPN+R+ + + A ++
Sbjct: 177 TADETTRREIATRLGLEQAPQFV-SGFDRPNIRYHIGQHERQRDALWQ 223
Score = 105 bits (263), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH-TEFHENKLEVVVATIAFGM 574
I+Y +RK+ S++++L G A Y+A LP QLR H F + + ++VATIAFGM
Sbjct: 235 IVYCLSRKKVESVSEWLSNKGRSALPYHAGLPH-QLREQHQARFLKEEGVIIVATIAFGM 293
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--------LP 626
GIDK +VR + H P+S+EAYYQE GRAGRDG A+ + L ++ TL P
Sbjct: 294 GIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGESANAWMSYGLQNVITLRQMIEQSDAP 353
Query: 627 SRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMK 686
+ + ++ ML C + CR + L+ YF +D C CD C+ PPE
Sbjct: 354 EAQQTVERRKLDAMLGLC-----EITSCRRQALIAYF-DDQLDAACGNCDNCLL-PPETW 406
Query: 687 NLKEEAN 693
+ E A
Sbjct: 407 DASEAAQ 413
>gi|207744581|ref|YP_002260973.1| atp-dependent dna helicase protein [Ralstonia solanacearum IPO1609]
gi|206595987|emb|CAQ62914.1| atp-dependent dna helicase protein [Ralstonia solanacearum IPO1609]
Length = 648
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 135/228 (59%), Gaps = 23/228 (10%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK- 214
D ++L FG+S+ + Q + ++ DCLVL TG GKSLC+QIPAL+ +
Sbjct: 28 DTAAATRAVLHDVFGYSAFRGPQADIVTHVADGGDCLVLMPTGGGKSLCYQIPALVRHRR 87
Query: 215 ---VVVVISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCP 268
+V+SPLI+LM DQ + L + GV A +L S G +VE+ G ++YV P
Sbjct: 88 GQGAGIVVSPLIALMQDQVAALEEAGVRAAYLNSALTGTEAAQVERDLAAGRLDLVYVAP 147
Query: 269 ETVIRLIKP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
E RL+ P L+ L SR I LFAIDE HCVS+WGHDFRP+Y +LSVL E F
Sbjct: 148 E---RLMTPRFLELLERSR-IGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP------ 197
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P +ALTATA R++I++ L + G + L+SF RPN+R+++
Sbjct: 198 ---HVPRIALTATADAVTRDEIVERLALG-GERVFLSSFDRPNIRYTI 241
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 116/234 (49%), Gaps = 19/234 (8%)
Query: 489 SFERTDLLNKPAERLSMLQEPL---------EDG--LTIIYVPTRKETLSIAKYLCGFGV 537
SF+R ++ E+ S Q+ L EDG I+Y +RK+ A++L G+
Sbjct: 231 SFDRPNIRYTIVEKDSARQQLLRFIRAEHLGEDGCDAGIVYCLSRKKVEETAQWLAEQGI 290
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
+A Y+A + R F + + V+VATIAFGMGIDK +VR + H P+SLE YY
Sbjct: 291 RALPYHAGMDVETRARHQAIFRKEEGVVMVATIAFGMGIDKPDVRFVAHLDLPKSLEGYY 350
Query: 598 QEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCC 654
QE GRAGRDG A+ + A++ ++ ++D K+ D ++ C
Sbjct: 351 QETGRAGRDGLPANAWMAYGLADVVQQRRMIDESDADDVHKRVSTAKLDALLGLCESAGC 410
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNS 708
R L+ YFGE S + C CD C+ PP+ + EA + + + Y Q S
Sbjct: 411 RRVALLAYFGE--SSQPCGNCDTCLS-PPQTWDATREAQMALSCV--YRVQQAS 459
>gi|392309341|ref|ZP_10271875.1| ATP-dependent DNA helicase [Pseudoalteromonas citrea NCIMB 1889]
Length = 603
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 136/220 (61%), Gaps = 21/220 (9%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
NS+LK FG+S ++ QK + A LA D LVL TG GKSLC+Q+PAL+ + VV+SP
Sbjct: 12 NSVLKNIFGYSEFRDGQKAVIDAALARQDSLVLLPTGGGKSLCYQVPALVLDGITVVVSP 71
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIR--LIK 276
LISLM DQ ++L GV+A F+ + P + + Q+ G ++YV PE +++ I+
Sbjct: 72 LISLMQDQVAQLQALGVSAEFINNSVPREQQHAIYQRVHDGDVKLLYVAPEKILQYEFIE 131
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L L ++LFAIDE HCVS WGHDFRP Y RLS L+++F A IP+MAL
Sbjct: 132 RLHHLP----VSLFAIDEAHCVSHWGHDFRPHYCRLSELKQHFPA---------IPMMAL 178
Query: 337 TATATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSVK 375
TATA R DI+ L + ++ T SF RPN+R++++
Sbjct: 179 TATADTATRYDIVNQLSLQ--NPYIHTGSFDRPNIRYTIE 216
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 106/194 (54%), Gaps = 17/194 (8%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP +L + ++ IIY +RK I++ L G AAAY+A + Q + V +
Sbjct: 220 KPLSQLMRYLKEQQNQSGIIYCTSRKRVDEISEKLADAGFNAAAYHAGMSNEQRQFVQSA 279
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + + +VVAT+AFGMGI+K NVR ++HY P+S+EAYYQE GRAGRDG A+ ++Y
Sbjct: 280 FARDDIHIVVATVAFGMGINKPNVRFVLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFD 339
Query: 616 -ANLSSMPTLLPS------RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A++ + RR E+Q A ++ CR +IL+ YF E +
Sbjct: 340 PADIGRVKRFFEDIEDEQRRRVEEQRFNAMASFAEA-------QTCRRQILLNYFSE-YQ 391
Query: 669 HEKCQLCDVCVDGP 682
E C CD+C++ P
Sbjct: 392 REPCGNCDICLNPP 405
>gi|359437026|ref|ZP_09227101.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20311]
gi|358028285|dbj|GAA63350.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20311]
Length = 607
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 136/220 (61%), Gaps = 17/220 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K ++LK+ FG+S ++ Q + A + D LVL TG GKS+C+QIPAL+ V +VI
Sbjct: 14 KPETVLKQVFGYSEFRDGQSAVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVI 73
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ ++L GV A ++ + + V Q+ +G+ ++YV PE V++
Sbjct: 74 SPLISLMQDQVAQLQALGVKAAYINNSLAREERQLVYQQLHQGLIKLLYVAPEKVLQH-D 132
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L+RL+ ++LFAIDE HCVS WGHDFRP Y RL+ L++ F +P+MAL
Sbjct: 133 FLERLSHL-NVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFA---------HVPMMAL 182
Query: 337 TATATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSVK 375
TATA R DI++ L + + ++ T SF RPN+R++++
Sbjct: 183 TATADKATRFDIVEQLKLQQ--PYIHTGSFDRPNIRYTIE 220
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 101/176 (57%), Gaps = 17/176 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK IA+ L G+ AAAY+A + Q + V T F + +++VVAT+AFGMG
Sbjct: 242 IIYCTSRKRVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMG 301
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPS----- 627
I+K NVR ++HY P+S+EAYYQE GRAGRDG A+ ++Y A++ +
Sbjct: 302 INKPNVRFVLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQ 361
Query: 628 -RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
RR E+Q A ++ CR +IL+ YF E + E C CD+C++ P
Sbjct: 362 RRRVEEQRFNAMASFAEA-------QTCRRQILLNYFSE-YQREPCGNCDICLNPP 409
>gi|376297360|ref|YP_005168590.1| ATP-dependent DNA helicase RecQ [Desulfovibrio desulfuricans ND132]
gi|323459922|gb|EGB15787.1| ATP-dependent DNA helicase RecQ [Desulfovibrio desulfuricans ND132]
Length = 757
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 127/224 (56%), Gaps = 19/224 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG Q+ + + +D LVL TG GKSLC+QIPA+L V V +SPLI
Sbjct: 30 ILSSVFGFPEFIGLQEAIIDHVMGGNDALVLMPTGGGKSLCYQIPAMLRPGVGVCVSPLI 89
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKP--L 278
+LM DQ L++ GV A L S +EQ AL G ++YV PE RL KP L
Sbjct: 90 ALMQDQVQGLTQMGVRAACLNSAMDPRSAWDIEQMALNGQLDLLYVAPE---RLCKPGFL 146
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+A G +LFAIDE HCVS+WGHDFRP+Y +LS+L+E F D+P +ALTA
Sbjct: 147 DFIARC-GPSLFAIDEAHCVSQWGHDFRPEYTQLSILKERFP---------DVPRLALTA 196
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
TA + DI+++L + F T F RPN+ ++V K +R
Sbjct: 197 TADEPTQADIVRNLQLENARVFA-TGFDRPNITYTVVPKKNPTR 239
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 91/168 (54%), Gaps = 7/168 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+ A YLC G KA Y+A L + F + V+VAT+AFGMG
Sbjct: 255 IVYRLSRKKVEQTADYLCKNGFKALPYHAGLSARERFENQERFMREEGVVMVATVAFGMG 314
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
+DK NVR + H P+SLEAY+QE GRAGRDG A C +++ + ++ S + +
Sbjct: 315 VDKPNVRFVCHLEPPKSLEAYHQETGRAGRDGLPASAWMCYGMQDIAILRAMIDSGEANE 374
Query: 633 QTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
K+ + L F + + T+ CR + L+ YFGE C CD C+
Sbjct: 375 TRKRIEHAKLGSLFAF-LETASCRRQALLAYFGEHIG--PCGNCDNCL 419
>gi|374287671|ref|YP_005034756.1| ATP-dependent DNA helicase [Bacteriovorax marinus SJ]
gi|301166212|emb|CBW25787.1| ATP-dependent DNA helicase [Bacteriovorax marinus SJ]
Length = 605
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 135/220 (61%), Gaps = 19/220 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+++ +LK FGH S + Q + +++ L HD + + TG GKS+C+Q+PAL + +V+
Sbjct: 11 QIHQILKDKFGHKSFRLSQHDIVNSILDGHDTMAIMPTGGGKSICYQVPALYLEGITLVV 70
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQ-PDNKVEQKALRGMYS----IIYVCPETVIRL 274
SPLISLM DQ S L+ +G+ A +L S Q P+ + Q+A+ + S ++Y+ PE + L
Sbjct: 71 SPLISLMSDQVSNLAANGIHAVYLNSNQSPEQR--QEAISDIRSKRAKLVYISPEGI--L 126
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
L ES I+L AIDE HCVS+WGH+FRPDY RL +L+E F + PLM
Sbjct: 127 SGGNSSLLESIDISLIAIDEAHCVSQWGHEFRPDYTRLGLLKELFPST---------PLM 177
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA + R DI L M + ++ +SF R N+++S+
Sbjct: 178 ALTATADEKTRRDIAYQLKMEEPNIYI-SSFDRSNIKYSI 216
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 131/260 (50%), Gaps = 26/260 (10%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+ S++K L G + AY+A L ++ V F+ + ++VAT+AFGMG
Sbjct: 240 IVYCLSRKKVESVSKKLKERGHHSFAYHAGLSANERDFVQKAFNNDDGIIIVATVAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM---PTLLPSRRSED 632
ID+ +VR + H P+S+E+YYQE GRAGRDG A+ + L + +L + + +
Sbjct: 300 IDRPDVRFVAHLDLPKSVESYYQETGRAGRDGQAANAWMVYGLQDVIKHSHMLETTEASE 359
Query: 633 QTKQAYR-----MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKN 687
K+ R MLS C T+ CR L++YF E+ S KC CD C+ P ++ +
Sbjct: 360 HYKKVAREKLDSMLSIC-----ETTKCRRNFLLQYFEEE-SSPKCDNCDSCLH-PGDVWD 412
Query: 688 LKEEANILMQVIAAYNEQ--SNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYL 745
+ +A L+ I ++ +N + D + G K K +R + + V I + K
Sbjct: 413 ARVDAQKLLSTIFRTGQRYGANYIVD---VLRGSKNSKVEERGHHNLSVYGIGKDETKS- 468
Query: 746 ATDLLWWRGLARIMENKGYI 765
W + R + N YI
Sbjct: 469 -----HWNLIVRQLLNMKYI 483
>gi|149057328|gb|EDM08651.1| Bloom syndrome homolog (human) (predicted), isoform CRA_a [Rattus
norvegicus]
gi|149057329|gb|EDM08652.1| Bloom syndrome homolog (human) (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 999
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 132/219 (60%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ +K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 649 IFRKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 708
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 709 SLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLI 768
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 769 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQRFPS---------VPVMA 819
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 820 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 857
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 71/108 (65%), Gaps = 3/108 (2%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVV 567
P + G IIY +RKE ++A L G+ A AY+A L S V H +++ +V+
Sbjct: 878 PYDSG--IIYCLSRKECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVIC 935
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
ATIAFGMGIDK +VR ++H P+S+E YYQE+GRAGRDG ++ CVL+
Sbjct: 936 ATIAFGMGIDKPDVRFVVHASLPKSVEGYYQESGRAGRDGEISHCVLF 983
>gi|374702008|ref|ZP_09708878.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. S9]
Length = 711
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 128/216 (59%), Gaps = 19/216 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK FG+ S + Q+ + + D LVL TG GKSLCFQ+PAL+ + VV+SPLI
Sbjct: 8 ILKDIFGYDSFRGRQEAIIQRVASGGDALVLMPTGGGKSLCFQVPALMRDGLAVVVSPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ + L + GV A L S + + RG ++Y+ PE ++ R++ L
Sbjct: 68 ALMDDQVATLDELGVAAVALNSTLSSDAQRDIADRIRRGEVKMLYLAPERLVQPRMLAFL 127
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
QRL IALFAIDE HCVS+WGHDFRP+Y +L L E F +P +ALTA
Sbjct: 128 QRLE----IALFAIDEAHCVSQWGHDFRPEYLQLGQLAEYFP---------QVPRIALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA ++ RE+I+ LH+ +F L+SF RPN+ + +
Sbjct: 175 TADMRTREEIINRLHLQDAERF-LSSFDRPNIFYRI 209
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 95/170 (55%), Gaps = 6/170 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
I+Y +RK+ +A +L G A Y+A LP S+LR H + F + ++VATIAFGM
Sbjct: 232 IVYCLSRKKVDEVAAFLSAQGFPALPYHAGLP-SELRAYHQKRFLNEEGLIMVATIAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS---MPTLLPSRRSE 631
GIDK NVR + H P+SLEAYYQE GRAGRDG AD + L + +L + +
Sbjct: 291 GIDKPNVRFVAHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVLLLKQMLNNSDGD 350
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
++ K+ + D + CR ++L+ YF E + C CD C+DG
Sbjct: 351 ERHKRIEQHKLDAMLALCEETRCRRQVLLGYFDEVL-EKPCGHCDNCIDG 399
>gi|386332140|ref|YP_006028309.1| atp-dependent dna helicase protein [Ralstonia solanacearum Po82]
gi|334194588|gb|AEG67773.1| atp-dependent dna helicase protein [Ralstonia solanacearum Po82]
Length = 648
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 135/228 (59%), Gaps = 23/228 (10%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK- 214
D ++L FG+S+ + Q + ++ DCLVL TG GKSLC+QIPAL+ +
Sbjct: 28 DTAAATRAVLHDVFGYSAFRGPQADIVTHVADGGDCLVLMPTGGGKSLCYQIPALVRHRR 87
Query: 215 ---VVVVISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCP 268
+V+SPLI+LM DQ + L + GV A +L S G +VE+ G ++YV P
Sbjct: 88 GQGAGIVVSPLIALMQDQVAALEEAGVRAAYLNSALTGTEAAQVERDLAAGRLDLVYVAP 147
Query: 269 ETVIRLIKP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
E RL+ P L+ L SR I LFAIDE HCVS+WGHDFRP+Y +LSVL E F
Sbjct: 148 E---RLMTPRFLELLERSR-IGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP------ 197
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P +ALTATA R++I++ L + G + L+SF RPN+R+++
Sbjct: 198 ---HVPRIALTATADAVTRDEIVERLALG-GERVFLSSFDRPNIRYTI 241
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 116/234 (49%), Gaps = 19/234 (8%)
Query: 489 SFERTDLLNKPAERLSMLQEPL---------EDG--LTIIYVPTRKETLSIAKYLCGFGV 537
SF+R ++ E+ S Q+ L EDG I+Y +RK+ A++L G+
Sbjct: 231 SFDRPNIRYTIVEKDSARQQLLRFIRAEHLGEDGCDAGIVYCLSRKKVEETAQWLAEQGI 290
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
+A Y+A + R F + + V+VATIAFGMGIDK +VR + H P+SLE YY
Sbjct: 291 RALPYHAGMDVETRARHQAIFRKEEGVVMVATIAFGMGIDKPDVRFVAHLDLPKSLEGYY 350
Query: 598 QEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCC 654
QE GRAGRDG A+ + A++ ++ ++D K+ D ++ C
Sbjct: 351 QETGRAGRDGLPANAWMAYGLADVVQQRRMIDESDADDVHKRVSTAKLDALLGLCESAGC 410
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNS 708
R L+ YFGE S + C CD C+ PP+ + EA + + + Y Q S
Sbjct: 411 RRVALLAYFGE--SSQPCGNCDTCLS-PPQTWDATREAQMALSCV--YRVQQAS 459
>gi|195451292|ref|XP_002072850.1| GK13825 [Drosophila willistoni]
gi|194168935|gb|EDW83836.1| GK13825 [Drosophila willistoni]
Length = 1457
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 135/235 (57%), Gaps = 20/235 (8%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
D ++ L FG S + Q + ++A L +DC VL TG GKSLC+Q+PA+LT V
Sbjct: 680 DHSSRMTQALSYSFGLKSFRPNQLQVINAALLGNDCFVLMPTGGGKSLCYQLPAILTEGV 739
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS------IIYVCPE 269
+VISPL SL+ DQ +KL+ + A + SG+ R + S ++YV PE
Sbjct: 740 TIVISPLKSLIFDQVNKLASLDICAKSM-SGEQSMSDAMTIYRDLESHPPLVKLLYVTPE 798
Query: 270 TV---IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
+ R L L + I+ F IDE HCVS+WGHDFRPDY++L +LR+ F
Sbjct: 799 KISSSARFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGILRKRFP------ 852
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
++P MALTATAT +VR DIL L++++ K+ L+SF R NLR+ V K +S
Sbjct: 853 ---NVPTMALTATATPRVRLDILSQLNLTQ-CKWFLSSFNRSNLRYKVLPKKGAS 903
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 104/178 (58%), Gaps = 18/178 (10%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RKE +++ +C G+++ AY+A L ++ ++ +K+ V+ ATIAFGMG
Sbjct: 922 IIYCLSRKECDDVSQKMCKAGIRSVAYHAGLSDTERESRQKDWILSKVRVICATIAFGMG 981
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM---PTLLPSRRSED 632
IDK +VR ++HY P+S+E YYQEAGRAGRDG +A+C+LY N S M +L R+ +
Sbjct: 982 IDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDIAECILYYNYSDMLRLKKMLDGDRALN 1041
Query: 633 ------QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-----QLCDVCV 679
YR++ C N + CR ++YFGE F+ E+C CD C+
Sbjct: 1042 YNVKKMHIDNLYRIVGYC----ENITDCRRAQQLDYFGEHFTSEQCLENRKTACDNCL 1095
>gi|402700588|ref|ZP_10848567.1| ATP-dependent DNA helicase RecQ [Pseudomonas fragi A22]
Length = 709
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 129/219 (58%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGDIIERVASGGDALVLMPTGGGKSLCFQVPALLRDGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAAALNSTLNAEQQRDLANRIKRGEIKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + +S IALFAIDE HCVS+WGHDFRP+Y +L L E F ++P +A
Sbjct: 121 PRMMAFLQSLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEVFP---------NVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I+ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVTRLHLQNAERF-LSSFDRPNIFYRI 209
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 105/203 (51%), Gaps = 12/203 (5%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A++LC G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLSERRSDA-GIVYCLSRKKVDEVAQFLCDQGFPALP 257
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A LP F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE G
Sbjct: 258 YHAGLPSETRAANQKRFLNEEGLIMVATIAFGMGIDKSNVRFVAHLDLPKSLEAYYQETG 317
Query: 602 RAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG AD + L + L L + +++ K+ D + CR +
Sbjct: 318 RAGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEHHKLDAMLSLCEETRCRRQT 377
Query: 659 LVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED + C CD CVDG
Sbjct: 378 LLAYFDEDMP-QPCGHCDNCVDG 399
>gi|423066192|ref|ZP_17054982.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis C1]
gi|406712234|gb|EKD07423.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis C1]
Length = 739
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 137/247 (55%), Gaps = 27/247 (10%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK++FG+ S + Q+E + L D L + TG GKSLCFQ+PALL + +V+SPLI+
Sbjct: 18 LKQYFGYDSFRPGQQEIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKPGLTLVVSPLIA 77
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVIRLIKP---- 277
LM DQ L +G+ A FL S ++ Q+ L+G ++YV PE RL+ P
Sbjct: 78 LMQDQVEALKDNGIGATFLNSTVDIHEARQRESAILQGQIKLLYVAPE---RLLSPQFLD 134
Query: 278 -LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L RL + GI+ IDE HCVS WGHDFRP+YR++ +R + +P +AL
Sbjct: 135 FLDRLEAAFGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYP---------HVPAIAL 185
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIY 396
TATAT +VR DI+K + + + V SF+R NL + V + KK F QL+ +
Sbjct: 186 TATATERVRFDIIKQIVLKQPYVHV-ASFYRSNLYYQVIPKQP------KKRFPQLLKVI 238
Query: 397 TKKKKTG 403
+G
Sbjct: 239 ESMSGSG 245
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 150/293 (51%), Gaps = 22/293 (7%)
Query: 489 SFERTDLL-----NKPAERLSMLQEPLED--GLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF R++L +P +R L + +E G IIY +RK +A L + A
Sbjct: 212 SFYRSNLYYQVIPKQPKKRFPQLLKVIESMSGSGIIYCSSRKRVEEVALQLQHNNIPALP 271
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A + S HT F + + ++VATIAFGMGIDK +VR +IHY P+SLE YYQE+G
Sbjct: 272 YHAGMADSDRLESHTRFIRDDVRIIVATIAFGMGIDKPDVRFVIHYDLPKSLENYYQESG 331
Query: 602 RAGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG A C+L Y ++ ++ L+ + D+ + A + L Y +T CR +I
Sbjct: 332 RAGRDGQPAQCLLFFSYGDMKTIEYLIEQKPDVDEQRIARQQLRQVIDYAESTE-CRHRI 390
Query: 659 LVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSG 718
+ YFGE+F C CD C P M++ EA + +A E+ M + G
Sbjct: 391 QLRYFGEEFP-GNCGTCDNCCHQRP-MEDWTVEAMKFLSCVARCRERFG-MSYIIDVLRG 447
Query: 719 IKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
K Q+ + R + K+ I R+++ W+ LAR + ++G + + +D
Sbjct: 448 AKNQRVLSRGHDKLSTYNIGRDRTVDE-------WKMLARSLLHQGLLDQTND 493
>gi|403294330|ref|XP_003938145.1| PREDICTED: Werner syndrome ATP-dependent helicase [Saimiri
boliviensis boliviensis]
Length = 1430
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 124/211 (58%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGHSS K Q + + + L D + + ATG GKSLCFQ P L GK+ +VISPLI
Sbjct: 538 LKTYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPLYVGKIGLVISPLI 597
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + ACFLGS Q ++ + L G Y I+Y+ PE + LQ+L
Sbjct: 598 SLMEDQVLQLRMSNIPACFLGSAQSEDVLGDVKL-GKYRIVYITPEYCSGNLSLLQQLEA 656
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
GI L A+DE HC+S+WGHDFR +R+L L+ +P++A+TATA+
Sbjct: 657 DIGITLIAVDEAHCISEWGHDFRNSFRKLGSLKTALPL---------VPIVAVTATASSS 707
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+++DI+ L++ K + T F RPNL V
Sbjct: 708 IQQDIVSCLNL-KNPQITCTGFDRPNLYLEV 737
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 104/178 (58%), Gaps = 13/178 (7%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + Y+A + ++ + H F ++++ V+ATIA
Sbjct: 763 EGPTIIYCPSRKMTEQVTAELRKLQLSCETYHAGMSFNKRKDTHHRFLRDEIQCVIATIA 822
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C VL+ A+++ LL
Sbjct: 823 FGMGINKADIRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRCLLAEI 882
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
R E +M+S +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 883 RDETFRLYKLKMMSKMEKY-LHSSRCRRRIILSHF-EDKQVQKASLGITGTEKCCDNC 938
>gi|209527293|ref|ZP_03275803.1| ATP-dependent DNA helicase RecQ [Arthrospira maxima CS-328]
gi|209492281|gb|EDZ92626.1| ATP-dependent DNA helicase RecQ [Arthrospira maxima CS-328]
Length = 739
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 138/244 (56%), Gaps = 21/244 (8%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK++FG+ S + Q+E + L D L + TG GKSLCFQ+PALL + +V+SPLI+
Sbjct: 18 LKQYFGYDSFRPGQQEIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKPGLTLVVSPLIA 77
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ L +G+ A FL S ++ Q+ L+G ++YV PE ++ + ++ L
Sbjct: 78 LMQDQVEALKDNGIGATFLNSTVDIHEARQRESAILQGQIKLLYVAPERLLSPQFLEFLD 137
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
RL + GI+ IDE HCVS WGHDFRP+YR++ +R + +P +ALTAT
Sbjct: 138 RLEAAFGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYP---------HVPAIALTAT 188
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKK 399
AT +VR DI+K + + + V SF+R NL + V + KK F QL+ +
Sbjct: 189 ATERVRFDIIKQIVLKQPYVHV-ASFYRSNLYYQVIPKQP------KKRFPQLLKVIESM 241
Query: 400 KKTG 403
+G
Sbjct: 242 SGSG 245
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 150/293 (51%), Gaps = 22/293 (7%)
Query: 489 SFERTDLL-----NKPAERLSMLQEPLED--GLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF R++L +P +R L + +E G IIY +RK +A L + A
Sbjct: 212 SFYRSNLYYQVIPKQPKKRFPQLLKVIESMSGSGIIYCSSRKRVEEVALKLQHNNIPALP 271
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A + S HT F + + ++VATIAFGMGIDK +VR +IHY P+SLE YYQE+G
Sbjct: 272 YHAGMADSDRLESHTRFIRDDVRIIVATIAFGMGIDKPDVRFVIHYDLPKSLENYYQESG 331
Query: 602 RAGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG A C+L Y ++ ++ L+ + D+ + A + L Y +T CR +I
Sbjct: 332 RAGRDGQPAQCLLFFSYGDMKTIEYLIEQKPDVDEQRIARQQLRQVIDYAESTE-CRHRI 390
Query: 659 LVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSG 718
+ YFGE+F C CD C P M++ EA + +A E+ M + G
Sbjct: 391 QLRYFGEEFP-GNCGTCDNCCHQRP-MEDWTVEAMKFLSCVARCRERFG-MSYIIDVLRG 447
Query: 719 IKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
K Q+ + R + K+ I R+++ W+ LAR + ++G + + +D
Sbjct: 448 AKNQRVLSRGHDKLSTYNIGRDRTVDE-------WKMLARSLLHQGLLDQTND 493
>gi|302811147|ref|XP_002987263.1| hypothetical protein SELMODRAFT_125799 [Selaginella moellendorffii]
gi|300144898|gb|EFJ11578.1| hypothetical protein SELMODRAFT_125799 [Selaginella moellendorffii]
Length = 711
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 155/268 (57%), Gaps = 23/268 (8%)
Query: 121 IVEEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKE 180
++EEQ E +DC +E D + + ++ +W+ + ++LL FG S+ + Q+E
Sbjct: 26 LLEEQAELRQLIDCCRASEEDDIQI-IEQDWSGNFEWDNEASNLLLNVFGISTFRRNQRE 84
Query: 181 ALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTA 240
++A +++ + +V+ A G GKSLC+Q+PALL + +V+SPL+SL+ DQ L+ GV+A
Sbjct: 85 IVNALMSNKNVVVVMAAGGGKSLCYQLPALLRPGIALVVSPLLSLIQDQVMGLAALGVSA 144
Query: 241 CFLGSGQPDNKVEQKALR-------GMYSIIYVCPETVI---RLIKPLQRLAESRGIALF 290
L S +K E+K + G I+YV PE + R + L++ + ++L
Sbjct: 145 AMLTS--TTSKEEEKEIYRVLEKGDGNLRILYVTPEKIAKSKRFMSKLEKCNRAGRLSLV 202
Query: 291 AIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILK 350
AIDE HC S+WGHDFRPDY+ L +L++ F +P++ALTATAT +V+ D+ +
Sbjct: 203 AIDEAHCCSQWGHDFRPDYKNLGILKKQFP---------KVPMIALTATATGRVQRDLQE 253
Query: 351 SLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
L + +F +S RPNL + V+ K
Sbjct: 254 MLQILPCERFT-SSVNRPNLFYEVRDKK 280
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 90/164 (54%), Gaps = 6/164 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RKE +A L + AA Y+A + VH + N+L+V+V T+AFGMG
Sbjct: 305 IVYCFSRKECEQVADALRKRQISAAHYHADMDSGLRTNVHRRWSSNQLQVIVGTVAFGMG 364
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K +VR +IH+ +SLE YYQE+GRAGRDG + CVLY + +P SE+
Sbjct: 365 INKPDVRFVIHHTLSKSLETYYQESGRAGRDGLPSRCVLYFRPADVPRQSCMVFSENTGL 424
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ-LCDVC 678
Q ++ RY + CR +YF E ++C +CD C
Sbjct: 425 QNLYAMA---RYCQSKQRCRRAAFFQYFAEQV--QECNGMCDTC 463
>gi|160895590|ref|YP_001561172.1| ATP-dependent DNA helicase RecQ [Delftia acidovorans SPH-1]
gi|333911808|ref|YP_004485540.1| RecQ familyATP-dependent DNA helicase [Delftia sp. Cs1-4]
gi|160361174|gb|ABX32787.1| ATP-dependent DNA helicase RecQ [Delftia acidovorans SPH-1]
gi|333742008|gb|AEF87185.1| ATP-dependent DNA helicase, RecQ family [Delftia sp. Cs1-4]
Length = 677
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 141/252 (55%), Gaps = 28/252 (11%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVV 217
+S+L+ FG+ + Q+ +S +A D LVL TG GKSLC+Q+PA++ + V V
Sbjct: 39 HSVLQAVFGYEQFRGPQEAIVSHVVAGGDALVLMPTGGGKSLCYQVPAIVRQQQGHGVAV 98
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETV--I 272
V+SPLI+LMHDQ L + GV+A +L S +VE + G +++Y PE +
Sbjct: 99 VVSPLIALMHDQVGALHEAGVSAAYLNSTLSYDETQEVEWRLQSGDITLLYAAPERLNTP 158
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
R + L L ++LFAIDE HCVS+WGHDFRP+YR LSVL E + +P
Sbjct: 159 RFLGLLDDLHAQGKLSLFAIDEAHCVSQWGHDFRPEYRALSVLHERYAG---------VP 209
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQL 392
+ALTATA R DI++ L + FV +SF RPN+R+ R + KKD
Sbjct: 210 RIALTATADALTRADIVERLQLESARHFV-SSFDRPNIRY---------RIAEKKDVSNQ 259
Query: 393 IDIYTKKKKTGE 404
+ + +++ GE
Sbjct: 260 LLRFIEREHEGE 271
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 118/251 (47%), Gaps = 34/251 (13%)
Query: 489 SFERTDLLNKPAER-------LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + AE+ L ++ E ++Y +RK +A+ L GV A
Sbjct: 240 SFDRPNIRYRIAEKKDVSNQLLRFIEREHEGEAGVVYCQSRKRVEELAQTLSQAGVPALP 299
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP + R++H + F V+VATIAFGMGI+K +VR + H P+++E YYQE
Sbjct: 300 YHAGLP-FETRQLHQDRFLREDGIVIVATIAFGMGINKPDVRFVAHVDMPKNIEGYYQET 358
Query: 601 GRAGRDGHLADCVLYANLSSMPT---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD + LS + ++ +ED KQ R D + CR
Sbjct: 359 GRAGRDGLPADAWMAYGLSDVVNQRRMIDESPAEDTFKQVMRGKLDALLGLAEATDCRRV 418
Query: 658 ILVEYFGEDF---------------------SHEKCQLCDVCVDGPPEMKNLKEEANILM 696
L+ YFGE + + C CD C++ PP + + + A L+
Sbjct: 419 RLLAYFGEQYGLGAPGEDAETDLEGRPLQRVAKTACGNCDNCME-PPALWDGTDAARKLL 477
Query: 697 QVIAAYNEQSN 707
I +E S
Sbjct: 478 STIYRVHEASQ 488
>gi|392337763|ref|XP_003753349.1| PREDICTED: Bloom syndrome protein homolog [Rattus norvegicus]
Length = 1401
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 132/219 (60%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ +K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 649 IFRKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 708
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 709 SLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLI 768
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 769 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQRFPS---------VPVMA 819
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 820 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 857
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 101/188 (53%), Gaps = 22/188 (11%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEV 565
P + G IIY +RKE ++A L G+ A AY+A L S V H +++ +V
Sbjct: 876 HHPYDSG--IIYCLSRKECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQV 933
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMP 622
+ ATIAFGMGIDK +VR ++H P+S+E YYQE+GRAGRDG ++ CVL Y +++ +
Sbjct: 934 ICATIAFGMGIDKPDVRFVVHASLPKSVEGYYQESGRAGRDGEISHCVLFYTYHDVTRLK 993
Query: 623 TLLPSRRS------EDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL- 674
L+ + E Y M+ Y N + CR L+ YFGE F+ + C+
Sbjct: 994 RLIMMEKDGNYHTRETHVNNLYSMV----HYCENITECRRIQLLAYFGEKGFNPDFCKKH 1049
Query: 675 ----CDVC 678
CD C
Sbjct: 1050 PDVSCDNC 1057
>gi|434399695|ref|YP_007133699.1| ATP-dependent DNA helicase RecQ [Stanieria cyanosphaera PCC 7437]
gi|428270792|gb|AFZ36733.1| ATP-dependent DNA helicase RecQ [Stanieria cyanosphaera PCC 7437]
Length = 708
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 134/228 (58%), Gaps = 15/228 (6%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
++ LK +FG+ S + QKE + L + D L++ TG GKSLCFQ+PALL + +V
Sbjct: 2 TRLEKALKHYFGYDSFRPGQKEIIEETLNNQDLLIIMPTGGGKSLCFQLPALLKPGLTLV 61
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVI--R 273
+SPLI+LM DQ L G+ A FL S ++ + L+G ++YV PE ++ +
Sbjct: 62 VSPLIALMQDQVDALKDRGIDATFLNSTLDYEEMRSRYGAILQGKIKLLYVAPERLLAEK 121
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
L ++A + GI+ AIDE HC+S+WGHDFRP+YR+L R+ + +PL
Sbjct: 122 FRTFLDKIANNIGISTIAIDEAHCISEWGHDFRPEYRQLKQFRQRYP---------QVPL 172
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
+ALTATAT +V++DI++ L + + L SF R N+ + V+ + S
Sbjct: 173 LALTATATKRVQQDIIEQLGL-QNPSVHLNSFNRFNIHYQVQPKQQRS 219
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 97/176 (55%), Gaps = 5/176 (2%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+ G I+Y +R+ +A L G+KA Y+A + + T F + ++V+VATI
Sbjct: 230 QSGAGIVYCLSRRNVEEVAYKLQKDGIKALPYHAGMTDEKRTINQTRFLRDDVQVMVATI 289
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL---SSMPTLLPS 627
AFGMGI+K +VR + HY P+SLE +YQE+GRAGRDG A +L+ ++ + L+
Sbjct: 290 AFGMGINKPDVRFVFHYDLPRSLENFYQESGRAGRDGESATSILFFSMGDWKKIDYLIEQ 349
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPP 683
+ + + A + L+ Y CR IL+ YFGE FS C CD C++ P
Sbjct: 350 KPDPQEQRIARQQLNQVIDYAEGVD-CRRTILLRYFGERFSG-NCGQCDNCLNPHP 403
>gi|386287427|ref|ZP_10064600.1| ATP-dependent DNA helicase RecQ [gamma proteobacterium BDW918]
gi|385279559|gb|EIF43498.1| ATP-dependent DNA helicase RecQ [gamma proteobacterium BDW918]
Length = 715
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 134/223 (60%), Gaps = 17/223 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ +G+ S +N Q + + + D LVL TG GKSLCFQ+PAL+ +VISPLI
Sbjct: 19 VLQSVYGYESFRNQQADIVDHVIQGGDALVLMPTGGGKSLCFQVPALVREGTAIVISPLI 78
Query: 224 SLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP-LQ 279
+LM DQ L ++G+ A FL S G N+VE + + G ++Y+ PE RL+ P +
Sbjct: 79 ALMQDQVMALRQNGIKAAFLNSSLNGMEVNEVENQLMNGELELLYIAPE---RLMMPRML 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L ++ ++LFAIDE HCVS+WGHDFRP+Y +L++L E F + P +ALTAT
Sbjct: 136 QLLDNAPLSLFAIDEAHCVSQWGHDFRPEYIKLTILHERFP---------NTPRVALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
A + +I++ L + F F RPN+R+ + ++ ++R
Sbjct: 187 ADGPTQREIIERLSLHNARVFN-DGFDRPNIRYRITENQGTAR 228
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 109/217 (50%), Gaps = 13/217 (5%)
Query: 479 SPHRDRDTDRSFERTDLLNKPAERLSMLQEPL--------EDGLTIIYVPTRKETLSIAK 530
S H R + F+R ++ + E +E L E I+Y +RK+ IA
Sbjct: 200 SLHNARVFNDGFDRPNIRYRITENQGTARENLLRFILNEHEGEAGIVYCLSRKKVDEIAL 259
Query: 531 YLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWP 590
+L G G+ A Y+A + Q ++ F ++VATIAFGMGIDK +VR + H P
Sbjct: 260 WLSGKGMTALPYHAGMSNEQRQQHQERFLREDGVIIVATIAFGMGIDKPDVRFVAHLNLP 319
Query: 591 QSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSR---RSEDQTKQAYRMLSDCFRY 647
+S+EAYYQE GRAGRDG AD + L + TL + +E+ K+ + D
Sbjct: 320 KSIEAYYQETGRAGRDGQPADAWMAYGLQDVITLRQMQGNSGAEESRKRLEQHKLDAMLG 379
Query: 648 GMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ CR + L+ YF +D+ H C CD C+ PPE
Sbjct: 380 LCELTTCRRQALLRYFDDDYDH-ACGNCDNCLT-PPE 414
>gi|294142824|ref|YP_003558802.1| ATP-dependent DNA helicase RecQ [Shewanella violacea DSS12]
gi|293329293|dbj|BAJ04024.1| ATP-dependent DNA helicase RecQ [Shewanella violacea DSS12]
Length = 610
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 134/220 (60%), Gaps = 22/220 (10%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
++S L+ FG+ + + Q+E + A DCLV+ TG GKSLC+Q+PAL + +V+S
Sbjct: 15 LSSSLQSVFGYRTFRKGQREVIEQICAGVDCLVIMPTGGGKSLCYQLPALQMPGLTIVVS 74
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS----IIYVCPETVIRLIK 276
PLISLM DQ L + GV A +L S Q + + LR M+S ++YV PE RL++
Sbjct: 75 PLISLMKDQVDSLQQMGVNAGYLNSSQAGQE-SARILREMHSGELKLLYVSPE---RLLQ 130
Query: 277 P--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ RL E I+LFAIDE HC+S+WGHDFRP+Y L LR+ F +P+M
Sbjct: 131 ASFIDRLHELH-ISLFAIDEAHCISQWGHDFRPEYAALGRLRQYFP---------HVPIM 180
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA R+DI + L ++ + LTSF RPN+R++V
Sbjct: 181 ALTATADQATRQDICQRLTITPFS--FLTSFDRPNIRYTV 218
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 146/286 (51%), Gaps = 21/286 (7%)
Query: 489 SFERTDLLNKPAERLSMLQE-----PLEDGLT-IIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ AE+L+ + ++G + IIY +R+ +A+ L G A +Y
Sbjct: 208 SFDRPNIRYTVAEKLNAANQLRQFVTAQNGTSGIIYCGSRRRVDEVAERLRLQGHNADSY 267
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A + + V F +++L++VVAT+AFGMGI+K NVR ++HY P+S+E+YYQE GR
Sbjct: 268 HAGRTQEERADVQDRFLKDQLDIVVATVAFGMGINKSNVRYVVHYDIPKSVESYYQETGR 327
Query: 603 AGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG ++ ++ A++ + L+ Q + L+ + CR ++L
Sbjct: 328 AGRDGLDSEALMLFDPADIGRVRHLIEQSEPGPQQQVELHKLNTMAAFA-EAQTCRRQVL 386
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGI 719
+ YF E + E C CD+C+D P +++ +L + +Q ++ + G
Sbjct: 387 LHYFDES-AEEPCGNCDICLDPPKRYNGIQDAQKVLSSIYRL--KQGFGINHLIEVLRGS 443
Query: 720 KKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGY 764
K +DR + K+ I +++S +Y W + R + + G+
Sbjct: 444 KAANVLDRGHDKLSTWGIGKDKSHEY-------WLSIIRQIIHLGF 482
>gi|251793708|ref|YP_003008438.1| ATP-dependent DNA helicase RecQ [Aggregatibacter aphrophilus
NJ8700]
gi|247535105|gb|ACS98351.1| ATP-dependent DNA helicase RecQ [Aggregatibacter aphrophilus
NJ8700]
Length = 631
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 131/214 (61%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ S + Q+E + A L+ DCLV+ ATG+GKSLC+QIPAL + +V+SPLI
Sbjct: 35 VLHSVFGYQSFRKGQQEIIHAALSGQDCLVIMATGTGKSLCYQIPALCFDGMTLVVSPLI 94
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +G+ A +L S Q +V+ +A+ G ++Y+ PE V + +
Sbjct: 95 SLMKDQVDQLRTNGIEADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEKV--MTNSFFQ 152
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
++ AIDE HC+S+WGHDFRP+Y +L L+ F +P+MALTATA
Sbjct: 153 FISHCNVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGCFP---------KVPIMALTATA 203
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++DIL++L +++ F + SF RPN+R+++
Sbjct: 204 DQTTQQDILQNLRLNR-PHFHVGSFDRPNIRYTL 236
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 142/280 (50%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L + I+Y +R + IA+ LC GV+AAAY+A + + +V +
Sbjct: 241 KPMEQLCRFVLAQKGKSGIVYCNSRNKVERIAETLCNKGVRAAAYHAGMENTLREKVQRD 300
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 301 FQRDNIQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYD 360
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + +L P R+ E QA ++ + CR +L+ YFGE
Sbjct: 361 PADYVWLNKILMEKPETPQRQIEQHKLQAIGEFAE-------SQTCRRLVLLNYFGEH-R 412
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
CQ CD+C+D P + L + I+ + Q + G+ QK D+
Sbjct: 413 QIPCQNCDICLDPPKKYDGLLDAQKIMSAIYR--TGQCYGAHYVIAVLRGMNNQKIRDQQ 470
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ ++ V I +E S +Y W+ + R + + G +R+
Sbjct: 471 HDQLSVYGIGKEHSAEY-------WQSVLRQLIHLGLVRQ 503
>gi|392344358|ref|XP_003748936.1| PREDICTED: Bloom syndrome protein homolog [Rattus norvegicus]
Length = 1401
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 132/219 (60%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ +K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 649 IFRKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 708
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 709 SLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLI 768
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 769 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQRFPS---------VPVMA 819
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 820 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 857
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 101/188 (53%), Gaps = 22/188 (11%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEV 565
P + G IIY +RKE ++A L G+ A AY+A L S V H +++ +V
Sbjct: 876 HHPYDSG--IIYCLSRKECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQV 933
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMP 622
+ ATIAFGMGIDK +VR ++H P+S+E YYQE+GRAGRDG ++ CVL Y +++ +
Sbjct: 934 ICATIAFGMGIDKPDVRFVVHASLPKSVEGYYQESGRAGRDGEISHCVLFYTYHDVTRLK 993
Query: 623 TLLPSRRS------EDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL- 674
L+ + E Y M+ Y N + CR L+ YFGE F+ + C+
Sbjct: 994 RLIMMEKDGNYHTRETHVNNLYSMV----HYCENITECRRIQLLAYFGEKGFNPDFCKKH 1049
Query: 675 ----CDVC 678
CD C
Sbjct: 1050 PDVSCDNC 1057
>gi|150025301|ref|YP_001296127.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium psychrophilum
JIP02/86]
gi|149771842|emb|CAL43316.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium psychrophilum
JIP02/86]
Length = 731
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 129/224 (57%), Gaps = 18/224 (8%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
E+ ++ LKK+FG + K Q++ + + +A H+ V+ TG GKSLC+Q+PAL+ G +
Sbjct: 5 EIDIHKELKKYFGFNQFKGLQEQVIKSIVAKHNSFVIMPTGGGKSLCYQLPALMQGGTAI 64
Query: 218 VISPLISLMHDQCS---KLSKHGVTACFLGSGQPDNKVEQ---KALRGMYSIIYVCPETV 271
V+SPLI+LM +Q LS A L S ++ Q G+ ++YV PE++
Sbjct: 65 VVSPLIALMKNQVDAIRSLSSEAGIAHVLNSSLTKTEIAQVKKDISSGLTKLLYVAPESL 124
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
+ + + I+ AIDE HC+S+WGHDFRP+YR L N+ L D+
Sbjct: 125 TK--EEYVTFLQKEKISFVAIDEAHCISEWGHDFRPEYRNL---------KNIIKLLGDV 173
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
P++ LTATAT +V+EDILK+L M+ F SF RPNL + V+
Sbjct: 174 PIIGLTATATPKVQEDILKNLDMANANTFK-ASFNRPNLYYEVR 216
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 102/188 (54%), Gaps = 5/188 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ +IA+ L G+ A Y+A L + F ++VVVATIAFGMG
Sbjct: 239 IIYCLSRKKVEAIAQVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMG 298
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--LPSRRSEDQ 633
IDK +VR +IH+ P+SLE+YYQE GRAGRDG C+ Y + + L S + +
Sbjct: 299 IDKPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMSGKPVAE 358
Query: 634 TKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDV--CVDGPPEMKNLKEE 691
+ + +L + Y TS R K L+ YFGE+F E CD+ + P K++
Sbjct: 359 QEVGFALLQEVVAYA-ETSMSRRKFLLHYFGEEFDSETGDGCDMDDNMRNPKAQVEAKDQ 417
Query: 692 ANILMQVI 699
L++VI
Sbjct: 418 VVKLIEVI 425
>gi|358339333|dbj|GAA38465.2| bloom syndrome protein homolog [Clonorchis sinensis]
Length = 949
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 132/232 (56%), Gaps = 20/232 (8%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
K+ K FG S + Q +A++A L DC V+ TG GKSLC+Q+PA + + +V
Sbjct: 203 AKMMEAFSKLFGLKSFRRNQLQAINAALLGLDCFVIMPTGGGKSLCYQLPAAVQDGLTLV 262
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMY------SIIYVCPETVI 272
ISPL +L+ DQ +K+ G+ A L +G+ + ++ ++YV PE +
Sbjct: 263 ISPLKALVLDQVTKMQSLGIVAAHL-TGEATMTESDRVYASLHLATLRTKLLYVTPEKIA 321
Query: 273 ---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKF 329
+L L++L + F IDE HCVS+WGHDFRPDYR LS+LR NF
Sbjct: 322 ASDKLKGCLEQLYRRNLLQRFVIDEAHCVSQWGHDFRPDYRNLSILRTNFP--------- 372
Query: 330 DIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
+P+MA+TATAT +VREDIL L M K TK+ + SF R NL+F V+ K S
Sbjct: 373 KVPMMAMTATATPRVREDILHQLKM-KNTKWFIQSFNRTNLKFEVRPKKLKS 423
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 113/207 (54%), Gaps = 24/207 (11%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVVATIAFGM 574
I+Y +R+E +A+ L G+ A+AY+A + +Q RR+ + E+K ++V ATIAFGM
Sbjct: 442 IVYCLSRRECDLVAEELSRAGLAASAYHAGMTDAQRRRIQEAWIQEDKCKIVCATIAFGM 501
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT 634
GIDK +VR +IH+ P+S+E YYQEAGR+GRDG A C+LY + + L + +
Sbjct: 502 GIDKPDVRFVIHHSLPKSIEGYYQEAGRSGRDGLPATCILYYHWHDVVRLRKLIQGDTPG 561
Query: 635 KQA-----------YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL-----CDVC 678
A +RM+S C N CR + ++ +FGE F C L CD C
Sbjct: 562 SNAFANVQLHEEALFRMVSYC----ENQIDCRRRQILSHFGEAFDAADCGLVVGCMCDNC 617
Query: 679 VDGPP---EMKNLKEEANILMQVIAAY 702
E +++ E+A ++++ + +
Sbjct: 618 QQADRRRLEQRDVTEDAVLIVRAVDGF 644
>gi|90414260|ref|ZP_01222240.1| putative ATP-dependent DNA helicase RecQ [Photobacterium profundum
3TCK]
gi|90324707|gb|EAS41248.1| putative ATP-dependent DNA helicase RecQ [Photobacterium profundum
3TCK]
Length = 615
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 136/227 (59%), Gaps = 17/227 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG+ S + Q+E + A + DCLV+ TG GKSLC+QIPAL+ + +VISPLI
Sbjct: 20 ILQDVFGYQSFRIGQQEVIEAVIEGQDCLVIMPTGGGKSLCYQIPALIMPGITLVISPLI 79
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL---RGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L+ +GV A ++ S +V + L G ++YV PE V+ + ++R
Sbjct: 80 SLMKDQVDQLNANGVAAAYINSTMSREEVMETFLAMREGDLKLVYVSPERVL-MRDFIER 138
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L E+ +++ A+DE HCVS+WGHDFRP+Y L L+++F ++P+MALTATA
Sbjct: 139 LYET-PLSMVAVDEAHCVSQWGHDFRPEYAALGTLKQHFE---------NLPIMALTATA 188
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY 385
R DI L ++ + L SF RPN+R+++ KH + Y
Sbjct: 189 DDTTRNDITSRLGLTNPHAY-LGSFDRPNIRYTLLEKHKPMTQLTRY 234
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 149/289 (51%), Gaps = 21/289 (7%)
Query: 487 DRSFERTDLL--NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544
DR R LL +KP +L+ + I+Y +RK IA+ L GV+AAAY+A
Sbjct: 213 DRPNIRYTLLEKHKPMTQLTRYLTGVRGQCGIVYCNSRKRVEQIAEKLRDSGVRAAAYHA 272
Query: 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAG 604
L + RV F + + +VVAT+AFGMGI+K NVR ++HY P+++E+YYQE GRAG
Sbjct: 273 GLDHDERGRVQESFQRDDIHIVVATVAFGMGINKPNVRFVVHYDIPRNIESYYQETGRAG 332
Query: 605 RDGHLADCVLYANLSSMPTLLPSRRSEDQ-----TKQAYRMLSDCFRYGMNTSCCRAKIL 659
RDG A+ V++ + S + L RR D+ KQ + CR ++L
Sbjct: 333 RDGLPAEAVMFYDPSDLAWL---RRCLDEKEDGAQKQVESHKLNAMGAFAEAQTCRRQVL 389
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGI 719
+ YFGE + E C CD+C+D PP+ N E A + + N QS + + G+
Sbjct: 390 LNYFGE-YREEPCGNCDICLD-PPKRFNAIEVAQKALSCVYRVN-QSFGVGYVVEVLRGM 446
Query: 720 KKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ Q+ + + K+ I RE S +Y W + R + ++G++ +
Sbjct: 447 QNQRIREHGHDKLTTYGIGREHSHEY-------WVSILRQLIHRGFLTQ 488
>gi|89267461|emb|CAJ83573.1| Werner syndrome homolog (human) [Xenopus (Silurana) tropicalis]
Length = 1171
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 123/219 (56%), Gaps = 12/219 (5%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWL-AHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
S LK +FGHSS K Q + + + L D LV+ ATG GKSLC+Q + T + +VI P
Sbjct: 470 SCLKTYFGHSSFKPVQWKVIHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVICP 529
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LISLM DQ +L + +CFLGS Q N V Q G +IY+ PE I LQ L
Sbjct: 530 LISLMEDQVLQLEMSNIPSCFLGSAQSKN-VLQDVKAGRMRVIYMTPEFCSGGISLLQDL 588
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
GI L AIDE HC+S+WGHDFR YR L +LK + +P++ALTATA+
Sbjct: 589 DNRYGITLIAIDEAHCISEWGHDFRSAYRSL---------GSLKRMLPTVPIVALTATAS 639
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380
+REDI KSL + + TSF RPNL V T+
Sbjct: 640 PSIREDISKSLSL-HNPQITCTSFDRPNLYLDVAKKTTN 677
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 156/323 (48%), Gaps = 44/323 (13%)
Query: 479 SPHRDRDTDRSFERTDLLNKPAERLSMLQEPLE-------------DGLTIIYVPTRKET 525
S H + T SF+R +L A++ + + L+ +G TI+Y PTRK +
Sbjct: 651 SLHNPQITCTSFDRPNLYLDVAKKTTNISTDLQQFLIKKQGSGWEFEGATIVYCPTRKTS 710
Query: 526 LSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRII 585
+ L G+ Y+A + Q R VH F ++++ VVAT+AFGMGI+K ++R++I
Sbjct: 711 EQVTAELTKLGIACGTYHAGMGIKQRRDVHHRFMRDEIQCVVATVAFGMGINKPDIRKVI 770
Query: 586 HYGWPQSLEAYYQEAGRAGRDGHLADC-VLY--ANLSSMPTLLPSRRSEDQTKQAYRMLS 642
HYG P+ +E+YYQE GRAGRDG + C L+ A+++ +L + + +ML+
Sbjct: 771 HYGAPKEMESYYQEIGRAGRDGLPSCCHALWTQADINFNRHMLGEIPNNSFREYKLKMLT 830
Query: 643 DCFRYGMNTSCCRAKILVEYFGED---------FSHEKCQLCDVC-------VDGPPEMK 686
+Y +N+S CR KI++ +F + EKC CD C +
Sbjct: 831 KMEKY-LNSSNCRRKIILSHFEDKQLRKASSGIMGTEKC--CDNCKTRLRFNISINDTED 887
Query: 687 NLKEEANILMQVIAAYNEQSNSMDDDDGI--YSGIKKQKFMDRPNLKMFVSKIREQSQKY 744
NL+E + I+A + + G Q+ DR S ++Q++ +
Sbjct: 888 NLQEFGQQAYKFISAVDILGQKFGTGVPVLFLRGSTSQRLPDRFRHHPLFSCGKDQTEAF 947
Query: 745 LATDLLWWRGLARIMENKGYIRE 767
W+ LAR + ++GY++E
Sbjct: 948 -------WKVLARQLISEGYLQE 963
>gi|224074554|ref|XP_002304389.1| predicted protein [Populus trichocarpa]
gi|222841821|gb|EEE79368.1| predicted protein [Populus trichocarpa]
Length = 718
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/233 (39%), Positives = 142/233 (60%), Gaps = 19/233 (8%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
+W+ + + + FG S + QKE ++A ++ D LV+ A G GKSLC+Q+PA+L V
Sbjct: 76 EWDSQADDVRLNIFGIPSYRQNQKEIINAIMSGRDVLVIMAAGGGKSLCYQLPAILRDGV 135
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKAL---RGMYSIIYVCPET 270
+VISPL+SL+ DQ L+ G+ A L S + + K KAL G I+YV PE
Sbjct: 136 ALVISPLLSLIQDQVMGLTALGIPAFMLTSTTSKENEKFIYKALEKGEGELKILYVTPEK 195
Query: 271 VI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
+ R + L++ + ++L +IDE HC S+WGHDFRPDY+ LS+L+ F
Sbjct: 196 ISKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKSLSILKTQFS------- 248
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380
++P++ALTATAT +V+ D+++ L + K KFV ++ RPNL ++V+ SK+S
Sbjct: 249 --NVPVVALTATATQKVQYDVMEMLRIPKCVKFV-STVNRPNLFYTVR-SKSS 297
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 92/164 (56%), Gaps = 6/164 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RKE +A L G+ A Y+A + + +VHT + +NKL+V+V T+AFGMG
Sbjct: 321 IVYCFSRKECEQVAAELRERGIAADYYHADMDVNAREKVHTWWSKNKLQVIVGTVAFGMG 380
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K +VR +IH+ +S+E YYQE+GRAGRDG ++CVL+ + +P E+
Sbjct: 381 INKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECVLFYRPADVPRQSSMVFYENSGL 440
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ-LCDVC 678
Q L D RY + CR +F E + C +CD C
Sbjct: 441 QN---LYDIVRYCQSKRQCRRNAFFRHFAEPL--QDCNGMCDNC 479
>gi|416894183|ref|ZP_11924993.1| ATP-dependent DNA helicase [Aggregatibacter aphrophilus ATCC 33389]
gi|347813652|gb|EGY30318.1| ATP-dependent DNA helicase [Aggregatibacter aphrophilus ATCC 33389]
Length = 630
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 131/214 (61%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ S + Q+E + A L+ DCLV+ ATG+GKSLC+QIPAL + +V+SPLI
Sbjct: 35 VLHSVFGYQSFRKGQQEIIHAALSGQDCLVIMATGTGKSLCYQIPALCFDGMTLVVSPLI 94
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +G+ A +L S Q +V+ +A+ G ++Y+ PE V + +
Sbjct: 95 SLMKDQVDQLRTNGIEADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEKV--MTNSFFQ 152
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
++ AIDE HC+S+WGHDFRP+Y +L L+ F +P+MALTATA
Sbjct: 153 FISHCNVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGCFP---------KVPIMALTATA 203
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++DIL++L +++ F + SF RPN+R+++
Sbjct: 204 DQTTQQDILQNLRLNR-PHFHVGSFDRPNIRYTL 236
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 142/280 (50%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L + I+Y +R + IA+ LC GV+AAAY+A + + +V +
Sbjct: 241 KPMEQLCRFVLAQKGKSGIVYCNSRNKVERIAETLCNKGVRAAAYHAGMENTLREKVQRD 300
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 301 FQRDNIQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYD 360
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + +L P R+ E QA ++ + CR +L+ YFGE
Sbjct: 361 PADYVWLNKMLMEKPETPQRQIEQHKLQAIGEFAE-------SQTCRRLVLLNYFGEH-R 412
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
CQ CD+C+D P + L + I+ + Q + G+ QK D+
Sbjct: 413 QIPCQNCDICLDPPKKYDGLLDAQKIMSAIYR--TGQCYGAHYVIAVLRGMNNQKIRDQQ 470
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ ++ V I +E S +Y W+ + R + + G +R+
Sbjct: 471 HDQLSVYGIGKEHSAEY-------WQSVLRQLIHLGLVRQ 503
>gi|422337702|ref|ZP_16418672.1| ATP-dependent DNA helicase recQ [Aggregatibacter aphrophilus F0387]
gi|353345034|gb|EHB89332.1| ATP-dependent DNA helicase recQ [Aggregatibacter aphrophilus F0387]
Length = 631
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 131/214 (61%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ S + Q+E + A L+ DCLV+ ATG+GKSLC+QIPAL + +V+SPLI
Sbjct: 35 VLHSVFGYQSFRKGQQEIIHAALSGQDCLVIMATGTGKSLCYQIPALCFDGMTLVVSPLI 94
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +G+ A +L S Q +V+ +A+ G ++Y+ PE V + +
Sbjct: 95 SLMKDQVDQLRTNGIEADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEKV--MTNSFFQ 152
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
++ AIDE HC+S+WGHDFRP+Y +L L+ F +P+MALTATA
Sbjct: 153 FISHCNVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGCFP---------KVPIMALTATA 203
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++DIL++L +++ F + SF RPN+R+++
Sbjct: 204 DQTTQQDILQNLRLNR-PHFHVGSFDRPNIRYTL 236
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 142/280 (50%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L + I+Y +R + IA+ LC GV+AAAY+A + + +V +
Sbjct: 241 KPMEQLCRFVLAQKGKSGIVYCNSRNKVERIAETLCNKGVRAAAYHAGMENTLREKVQRD 300
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 301 FQRDNIQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYD 360
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + +L P R+ E QA ++ + CR +L+ YFGE
Sbjct: 361 PADYVWLNKILMEKPETPQRQIEQHKLQAIGEFAE-------SQTCRRLVLLNYFGEH-R 412
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
CQ CD+C+D P + L + I+ + Q + G+ QK D+
Sbjct: 413 QIPCQNCDICLDPPKKYDGLLDAQKIMSAIYR--TGQCYGAHYVIAVLRGMNNQKIRDQQ 470
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ ++ V I +E S +Y W+ + R + + G +R+
Sbjct: 471 HDQLSVYGIGKEHSAEY-------WQSVLRQLIHLGLVRQ 503
>gi|407804673|ref|ZP_11151487.1| ATP-dependent DNA helicase RecQ [Alcanivorax sp. W11-5]
gi|407021366|gb|EKE33140.1| ATP-dependent DNA helicase RecQ [Alcanivorax sp. W11-5]
Length = 601
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 20/225 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++L++ FG+ S + Q+ + +D LVL TG GKSLC+QIPALL VVISPL
Sbjct: 7 TILERVFGYHSFRGHQQAIIETLWHGNDALVLMPTGGGKSLCYQIPALLHSGTGVVISPL 66
Query: 223 ISLMHDQCSKLSKHGVTACFLGS--GQPD-NKVEQKALRGMYSIIYVCPE--TVIRLIKP 277
I+LM DQ L + GV A FL S G+ D EQ L G ++Y+ PE T R +
Sbjct: 67 IALMQDQVDALHELGVRAGFLNSSLGREDIIATEQALLHGQLDLLYIAPERLTQQRTLSL 126
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L+++ +ALFAIDE HCVS+WGHDFR +Y +L +L E F D+P +ALT
Sbjct: 127 LKQIP----LALFAIDEAHCVSQWGHDFRSEYLQLGLLHEQFP---------DVPRIALT 173
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
ATA ++ RE+I + L ++ FV +SF RPN+++ + K+++R
Sbjct: 174 ATADMRTREEIARRLQLTDAAHFV-SSFDRPNIQYRIT-QKSNAR 216
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 97/199 (48%), Gaps = 11/199 (5%)
Query: 484 RDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYN 543
R T +S R LL R + P + G I+Y +R + + A++L G A Y+
Sbjct: 208 RITQKSNARQQLL-----RFLRAEHPGDAG--IVYCLSRNKVDTTAEWLQQQGFNALPYH 260
Query: 544 ASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRA 603
A LP +Q R F ++VATIAFGMGIDK +VR + H P+S+E YYQE GRA
Sbjct: 261 AGLPAAQRRDHQQRFLREDGVIMVATIAFGMGIDKPDVRFVAHLDLPKSIEGYYQETGRA 320
Query: 604 GRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILV 660
GRDG A L ++ + +L + K++ R D CR L+
Sbjct: 321 GRDGEPATAWLVYGVEDVIKLRQMLEGSAGSEDHKRSERQKLDAMLGLCEIVSCRRHALL 380
Query: 661 EYFGEDFSHEKCQLCDVCV 679
YFGE S +C CD C+
Sbjct: 381 TYFGEA-SDAQCGNCDACL 398
>gi|336054183|ref|YP_004562470.1| ATP-dependent DNA helicase RecQ [Lactobacillus kefiranofaciens ZW3]
gi|333957560|gb|AEG40368.1| ATP-dependent DNA helicase RecQ [Lactobacillus kefiranofaciens ZW3]
Length = 591
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/249 (42%), Positives = 145/249 (58%), Gaps = 20/249 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK+ FG++S + QK+ + L + L + TG+GKSLC+Q+PAL+ V +VISPLI
Sbjct: 6 ILKQTFGYASFRPGQKKVIDLILNKQNVLAVMPTGAGKSLCYQVPALINPGVTLVISPLI 65
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ L ++GV A L S P N + ++A G +IY+ PE RL R
Sbjct: 66 SLMKDQIDSLKQNGVNAAALNSTTPQEEVNPILRQAYEGKIKLIYITPE---RLAMDYFR 122
Query: 281 LAES-RGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ I L A+DE HC+S+WGHDFRP YR+L G N+LKS ++ALTAT
Sbjct: 123 YQLNFLDIDLVAVDEAHCISQWGHDFRPAYRQLLE-----GINSLKSRP---NILALTAT 174
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR---ASY-KKDFCQLIDI 395
AT V++DI + L++ K FV+TSF RPNL F V +S ++ A Y KK + I
Sbjct: 175 ATPAVQDDIGQQLNIPK-ENFVITSFARPNLSFKVVNSPQNTPLYIAQYIKKHADEAGII 233
Query: 396 YTKKKKTGE 404
YT +K E
Sbjct: 234 YTNTRKKVE 242
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 95/173 (54%), Gaps = 7/173 (4%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
D IIY TRK+ ++ YL G+ AY+ L + +V F ++++++VAT A
Sbjct: 228 DEAGIIYTNTRKKVETLTAYLAKKGISVGAYHGGLKAQERSQVQEAFQFDEIQIIVATNA 287
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSR 628
FGMGIDK NVR +IH +++E+YYQEAGRAGRDG ++ +L +L +
Sbjct: 288 FGMGIDKSNVRFVIHASSARNIESYYQEAGRAGRDGEESEAILIYHPGDLRQYRYFIDES 347
Query: 629 RSEDQTKQ-AYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVD 680
+ ++ ++ Y+ L Y NT C + +V YFG+D S C C C++
Sbjct: 348 DAYEKYRELQYQKLQSITDYA-NTGECLQQFIVRYFGQDCS--PCGKCSNCLN 397
>gi|359783323|ref|ZP_09286538.1| ATP-dependent DNA helicase RecQ [Pseudomonas psychrotolerans L19]
gi|359368750|gb|EHK69326.1| ATP-dependent DNA helicase RecQ [Pseudomonas psychrotolerans L19]
Length = 712
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 130/216 (60%), Gaps = 19/216 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK FG+ + + Q + + D LVL TG GKSLC+Q+PALL V VV+SPLI
Sbjct: 8 ILKDVFGYDAFRGNQARIIERVASGGDALVLMPTGGGKSLCYQVPALLRPGVAVVVSPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ + L + GV+A L S G+ V + RG ++Y+ PE ++ R++ L
Sbjct: 68 ALMDDQVATLLELGVSATALNSTMTGEQQRAVAAQLERGEIKLLYLAPERLVQPRMLDFL 127
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+RL IALFAIDE HCVS+WGHDFRP+Y +L L E+F +P +ALTA
Sbjct: 128 KRLP----IALFAIDEAHCVSQWGHDFRPEYMQLGQLAEHFPG---------VPRLALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA + RE++ LH+ + +F L+SF RPN+ + +
Sbjct: 175 TADSRTREEMASRLHLEQAERF-LSSFDRPNIFYRI 209
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 92/173 (53%), Gaps = 14/173 (8%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+ +A+ L G A Y+A LP F + ++VATIAFGMG
Sbjct: 232 IVYCMSRKKVEEVAEQLSNQGFPALPYHAGLPNDVRAANQKRFLNEEGLIMVATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSED 632
IDK NVR + H P+SLEAYYQE GRAGRDG AD + L + L + + ++
Sbjct: 292 IDKPNVRFVAHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVLLLRQMMQNSEGDE 351
Query: 633 QTKQAYR-----MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVD 680
+ K+ R ML+ C + CR ++L+ YF +D + C CD C+D
Sbjct: 352 RHKRIERHKLEAMLALC-----EETRCRRQVLLAYF-DDHLPQPCGHCDNCID 398
>gi|226226370|ref|YP_002760476.1| ATP-dependent DNA helicase RecQ [Gemmatimonas aurantiaca T-27]
gi|226089561|dbj|BAH38006.1| ATP-dependent DNA helicase RecQ [Gemmatimonas aurantiaca T-27]
Length = 524
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 124/217 (57%), Gaps = 17/217 (7%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ +L FG++ + Q+E + A LA DC+ L TG+GKSL +QIPA L G V+VISP
Sbjct: 16 DDVLHDVFGYTEFRPGQREVIDAVLAGRDCIALMPTGAGKSLTYQIPARLLGGTVLVISP 75
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK--ALR-GMYSIIYVCPETVIRLIKPL 278
LISLM DQ ++ G + S N+ + A R G Y ++Y+ PE L L
Sbjct: 76 LISLMKDQVDAVASLGYRVTAINSTLEPNERRARLDAFRAGAYELVYLAPEA---LDGYL 132
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+ I+L +DE HC+S+WGHDFRP YRRL L++ + D+P++ALTA
Sbjct: 133 GDFVQGCPISLLVVDEAHCISQWGHDFRPSYRRLQGLKQ----------QLDVPVLALTA 182
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
TAT V DIL+ L M K F SFFRPNLR V+
Sbjct: 183 TATRDVARDILRQLGMKKPAGFK-GSFFRPNLRIGVR 218
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 93/167 (55%), Gaps = 7/167 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK A++L GVKA +Y+A L + R F + ++V+VAT+AFGMG
Sbjct: 243 IVYCQSRKGVEQTAEFLVQQGVKALSYHAGLDAEERARNQEAFQRDDIDVMVATVAFGMG 302
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
IDK NVR +IH P+ +E++YQE GRAGRDG +DC+++ A++ + L E
Sbjct: 303 IDKSNVRFVIHRDMPKDIESWYQEIGRAGRDGLPSDCIMFYSWADVIAHERFLDRLEDEA 362
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL-CDVC 678
++ + F + S CR + LV +F E + E C CD C
Sbjct: 363 LRERTHAATKALFNL-IERSSCRHQALVRHFDE--AVEPCGTSCDHC 406
>gi|325956686|ref|YP_004292098.1| ATP-dependent DNA helicase RecQ [Lactobacillus acidophilus 30SC]
gi|325333251|gb|ADZ07159.1| ATP-dependent DNA helicase RecQ [Lactobacillus acidophilus 30SC]
Length = 588
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 130/221 (58%), Gaps = 14/221 (6%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK+ FG+ S + QK+ + L + L + TG+GKSLC+Q+PAL+ V +VISPLI
Sbjct: 6 VLKQTFGYDSFRPGQKKVIDLVLNKQNVLAVMPTGAGKSLCYQVPALMNAGVTLVISPLI 65
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ L ++G+ A L S P N + ++A G +IY+ PE + I +
Sbjct: 66 SLMKDQIDTLKQNGINAAALNSATPQEEVNPILRQAYEGKIKLIYITPERL--AIDYFRY 123
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
I L A+DE HC+S+WGHDFRP YR+L + + SLK ++ALTATA
Sbjct: 124 QLNFLDIDLVAVDEAHCISQWGHDFRPAYRQL--------LDGINSLKSRPNILALTATA 175
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
T V++DI + L++ K ++TSF RPNL F V +S ++
Sbjct: 176 TPAVQDDICEQLNIPK-QNMIITSFARPNLSFKVVNSPQNT 215
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 22/207 (10%)
Query: 489 SFERTDL----LNKP-------AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGV 537
SF R +L +N P A+ + M P E G IIY TRK+ S+ YL G+
Sbjct: 198 SFARPNLSFKVVNSPQNTPLYIAQYIKM--HPDEAG--IIYTNTRKKVESLTDYLAKKGI 253
Query: 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597
AY+ + + V F ++++V+VAT AFGMGIDK NVR +IH +++E+YY
Sbjct: 254 SVGAYHGGMETKERDEVQEAFQFDQVQVIVATNAFGMGIDKSNVRFVIHASSARNIESYY 313
Query: 598 QEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQ-AYRMLSDCFRYGMNTSC 653
QEAGRAGRDG ++ ++ +L + ++++ ++ Y+ L Y NT
Sbjct: 314 QEAGRAGRDGEESEAIMIYHPGDLRQYRFFIDESTADEKYRELQYQKLQAITDYA-NTGE 372
Query: 654 CRAKILVEYFGEDFSHEKCQLCDVCVD 680
C + +V YFG+D E C C C++
Sbjct: 373 CLQQFIVRYFGQDC--EPCGKCSNCLN 397
>gi|315635218|ref|ZP_07890495.1| ATP-dependent helicase RecQ [Aggregatibacter segnis ATCC 33393]
gi|315475964|gb|EFU66719.1| ATP-dependent helicase RecQ [Aggregatibacter segnis ATCC 33393]
Length = 629
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 132/215 (61%), Gaps = 15/215 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++L FG+ + + Q+E + A L DCLV+ ATG+GKSLC+QIPAL + +V+SPL
Sbjct: 33 NVLHSVFGYQAFRKGQEEIIQAALNGQDCLVIMATGTGKSLCYQIPALCFDGMTLVVSPL 92
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L GV A +L S Q +V+ +A+ G ++Y+ PE V +
Sbjct: 93 ISLMKDQVDQLRASGVEADYLNSSQTFEEQQQVQNRAISGQLKLLYLSPEKV--MTNSFF 150
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ ++ AIDE HC+S+WGHDFRP+Y +L L+ +F ++P+MALTAT
Sbjct: 151 QFISLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGSFP---------NVPIMALTAT 201
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
A ++DIL++L +++ F + SF RPN+R+++
Sbjct: 202 ADPTTQQDILQNLRLNR-PHFHVGSFDRPNIRYTL 235
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 143/280 (51%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L + I+Y +R + IA+ LC GV+AAAY+A + S +V +
Sbjct: 240 KPMEQLCRFVVAQKGKSGIVYCNSRNKVERIAETLCNKGVRAAAYHAGMENSLREKVQRD 299
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 300 FQRDNIQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYD 359
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + +L P R+ E QA ++ + CR +L+ YFGE
Sbjct: 360 PADYVWLNKMLMEKPETPQRQIEQHKLQAIGEFAE-------SQTCRRLVLLNYFGEH-R 411
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
CQ CD+C+D P + L + I+ + QS + G+ QK D+
Sbjct: 412 QTACQNCDICLDPPKKYDGLLDAQKIMSAIYR--TGQSYGAHYVIAVLRGMNNQKIRDQQ 469
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ ++ V I +E S +Y W+ + R + + G +R+
Sbjct: 470 HDQLSVYGIGKEHSTEY-------WQSVLRQLIHLGLVRQ 502
>gi|296204062|ref|XP_002749167.1| PREDICTED: Bloom syndrome protein isoform 2 [Callithrix jacchus]
Length = 1415
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 657 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 716
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE + RLI
Sbjct: 717 SLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLI 776
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E R +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 777 STLENLYERRLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 827
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 828 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 865
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 101/182 (55%), Gaps = 14/182 (7%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVV 567
P + G IIY +R+E ++A L G+ A AY+A L S + ++ +++ +V+
Sbjct: 886 PYDSG--IIYCLSRRECDTMADTLQRDGLSALAYHAGLSDSARDEIQQKWINQDGCQVIC 943
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--- 624
ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L
Sbjct: 944 ATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRL 1003
Query: 625 -LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL-----CD 676
+ + T++ + L Y N + CR L+ YFGE+ F+ + C+ CD
Sbjct: 1004 IMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHADVSCD 1063
Query: 677 VC 678
C
Sbjct: 1064 NC 1065
>gi|124005481|ref|ZP_01690321.1| ATP-dependent DNA helicase RecQ [Microscilla marina ATCC 23134]
gi|123988915|gb|EAY28508.1| ATP-dependent DNA helicase RecQ [Microscilla marina ATCC 23134]
Length = 712
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 127/219 (57%), Gaps = 25/219 (11%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK +FG+S + QKE +SA L D L TG GKSLC+Q+PAL+ + VV+SPLI
Sbjct: 9 ILKDYFGYSRFRPLQKEIISAILEGKDVFALMPTGGGKSLCYQVPALMFNGLCVVVSPLI 68
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCP-----ETVIRLI 275
+LM +Q + L+++ + A +L S Q + +E K ++YV P ET + +
Sbjct: 69 ALMKNQVAALAQYNIPAAYLNSTQSNEAQELIENKCFNKEIKLLYVSPEKLTSETFLNFL 128
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
K +Q +++FAIDE HC+S WGHDFRP+Y +LS ++E F P++A
Sbjct: 129 KIIQ-------VSMFAIDEAHCISAWGHDFRPEYSKLSKIKEFFPTK---------PMVA 172
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA R+DI+ L ++ F SF RPN+R +V
Sbjct: 173 LTATADTITRQDIINQLQLTDYELFT-ASFDRPNIRMNV 210
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 100/176 (56%), Gaps = 10/176 (5%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVA 568
P + GL IY TR+ET ++K L G A Y+A L + +V F +++ +V A
Sbjct: 228 PNQTGL--IYCLTRQETEEMSKKLQEAGFAARCYHAGLNSKERSQVQHGFLNDEVHIVCA 285
Query: 569 TIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM---PTLL 625
T+AFGMGI K NVR +IHY P++LE+YYQE GRAGRD ++D +L+ + + TL+
Sbjct: 286 TVAFGMGIHKNNVRFVIHYNMPRNLESYYQEIGRAGRDQEISDVILFYSFKDVIHWRTLI 345
Query: 626 PSRRSE---DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVC 678
++ D + L+ +Y S CR +IL+ YFGE HE C CDVC
Sbjct: 346 AESKTNHELDNNQLKMAKLARMQQYA-EASICRRRILLNYFGEAV-HEDCGNCDVC 399
>gi|410694325|ref|YP_003624947.1| ATP-dependent DNA helicase recQ [Thiomonas sp. 3As]
gi|294340750|emb|CAZ89142.1| ATP-dependent DNA helicase recQ [Thiomonas sp. 3As]
Length = 617
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 133/213 (62%), Gaps = 16/213 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+ +G+ + ++ Q +A+ +A D LVL TG GKSLCFQIPALL V +V+SPLI+
Sbjct: 12 LQHVWGYPAFRSLQAQAIDHVVAGRDALVLMPTGGGKSLCFQIPALLREGVGIVVSPLIA 71
Query: 225 LMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ + L + G+ A FL S V++ A +G ++Y+ PE + L + Q L
Sbjct: 72 LMQDQVAALRELGLRAAFLNSTLDATEARAVQRAARQGELDLLYMAPERL--LSESGQAL 129
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+ IALFAIDE HCVS+WGHDFRP+Y +LS+LRE + ++P +ALTATA
Sbjct: 130 LDDLRIALFAIDEAHCVSQWGHDFRPEYGQLSLLRERWP---------EVPRVALTATAD 180
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
R +I++ L + G +FV +SF RPN+R+ V
Sbjct: 181 EPTRHEIVQRL-LHDGAEFV-SSFDRPNIRYRV 211
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 101/191 (52%), Gaps = 14/191 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
++Y +R +A+ L G G++A Y+A LP + +R H F + V+VATIAFGM
Sbjct: 235 VVYALSRNTVEEVAEMLAGHGLRALPYHAGLPAA-IRTAHLRRFLDEDGIVMVATIAFGM 293
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSED-- 632
GIDK +VR + H P+S+E Y+QE GRAGRDG A + L+ + + RR D
Sbjct: 294 GIDKPDVRFVAHLDMPKSIEGYFQETGRAGRDGLPATAWMAYGLADV---VQQRRLIDLS 350
Query: 633 QTKQAYRMLS----DCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
AY+ LS D + CR L+ YFGE + C CD C++ PP++ +
Sbjct: 351 DADDAYKRLSTAKLDAMLALAEAADCRRVRLLGYFGE--ASAPCGNCDNCLN-PPQLIDA 407
Query: 689 KEEANILMQVI 699
E A L+ I
Sbjct: 408 TEAAQKLLSTI 418
>gi|260770707|ref|ZP_05879637.1| ATP-dependent DNA helicase RecQ [Vibrio furnissii CIP 102972]
gi|260614288|gb|EEX39477.1| ATP-dependent DNA helicase RecQ [Vibrio furnissii CIP 102972]
Length = 611
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/261 (38%), Positives = 147/261 (56%), Gaps = 34/261 (13%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
++L+ FG+ + ++ Q+E + + +A D LV+ TG GKSLC+QIPAL V VVISP
Sbjct: 17 QTILRDVFGYQTFRDGQQEVIESAVAGRDALVIMPTGGGKSLCYQIPALAREGVTVVISP 76
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS--------IIYVCPETVI- 272
LISLM DQ +L +GV A + S Q ++AL G+Y+ ++YV PE V+
Sbjct: 77 LISLMKDQVDQLKANGVAAECVNSTQ-----SREALMGIYNRMHSGQLKLLYVSPERVLT 131
Query: 273 -RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
I+ L L +A+ A+DE HC+S+WGHDFRP+Y L L++ F +
Sbjct: 132 GEFIERLHNLP----LAMIAVDEAHCISQWGHDFRPEYAALGQLKQQFP---------QV 178
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---K 386
P+MALTATA R DIL L+++ + L SF RPN+R+++ KH S Y +
Sbjct: 179 PIMALTATADDATRSDILSRLNLTDPHVY-LGSFDRPNIRYTLMEKHKPVSQVIRYLDTQ 237
Query: 387 KDFCQLIDIYTKKKKTGEKEK 407
K C +I ++KK EK
Sbjct: 238 KGHCGIIYCGSRKKVEMVTEK 258
Score = 122 bits (306), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 110/192 (57%), Gaps = 6/192 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ + + LC ++AA Y+A + + V F + +++VVAT+AFGMG
Sbjct: 243 IIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMG 302
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ V+ A+++ + +L +
Sbjct: 303 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAVMLYDPADIAWLRRMLDEKSDGP 362
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
Q + L+ + CR ++L+ YFGE + + C CD+C+D PP+ + EEA
Sbjct: 363 QKQVETHKLTAMSNFA-EAQTCRRQVLLNYFGE-YRDKPCGNCDICLD-PPKHFDATEEA 419
Query: 693 NILMQVIAAYNE 704
+ + N+
Sbjct: 420 RKALSCVYRVNQ 431
>gi|77457695|ref|YP_347200.1| ATP-dependent DNA helicase RecQ [Pseudomonas fluorescens Pf0-1]
gi|398979736|ref|ZP_10688622.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM25]
gi|77381698|gb|ABA73211.1| ATP-dependent DNA helicase [Pseudomonas fluorescens Pf0-1]
gi|398135469|gb|EJM24586.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM25]
Length = 709
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRDGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLANRIKRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + + IALFAIDE HCVS+WGHDFRP+Y +L L E F D+P +A
Sbjct: 121 PRMLSFLQGLNIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I+ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVTRLHLQNAERF-LSSFDRPNIFYRI 209
Score = 108 bits (271), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 107/204 (52%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +L G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLAERRSDA-GIVYCLSRKKVEEVAAFLTEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP + LR H + F + ++VAT+AFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NDLRAYHQKRFLNEEGLIMVATVAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSS---MPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GR GRDG AD + L + +L + +++ K+ + D + CR +
Sbjct: 317 GRGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED E C CD C DG
Sbjct: 377 ALLAYFDEDMP-EPCGHCDNCTDG 399
>gi|399001574|ref|ZP_10704286.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM18]
gi|398127125|gb|EJM16539.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM18]
Length = 708
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 128/219 (58%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIKRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + +S IALFAIDE HCVS+WGHDFRP+Y +L L E F D+P +A
Sbjct: 121 PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I+ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVNRLHLQNAERF-LSSFDRPNIFYRI 209
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 103/203 (50%), Gaps = 12/203 (5%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +L G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLAERRSDA-GIVYCLSRKKVDEVAVFLSEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A LP F + ++VAT+AFGMGIDK NVR + H P+SLEAYYQE G
Sbjct: 258 YHAGLPNETRAHHQKRFLNEEGLIMVATVAFGMGIDKPNVRFVAHLDLPKSLEAYYQETG 317
Query: 602 RAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
R GRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 318 RGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQT 377
Query: 659 LVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED E C CD CVDG
Sbjct: 378 LLAYFDEDMP-EPCGHCDNCVDG 399
>gi|297738545|emb|CBI27790.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 134/222 (60%), Gaps = 21/222 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LL+ HFGH+ + Q EA+ A L+ DC L TG GKS+C+QIPAL +V+V+ PLI
Sbjct: 27 LLRWHFGHAEFRGRQLEAIEAILSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVCPLI 86
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS------IIYVCPETVIRLIKP 277
+LM +Q L + G+ A FL S Q KV K + S ++YV PE +I
Sbjct: 87 ALMENQVMALKEKGIAAEFLSSTQ-TTKVRDKIHEDLQSGKPSLRLLYVTPE-LIATPGF 144
Query: 278 LQRLAE--SRGIA-LFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ RL + +RG+ L AIDE HC+S WGHDFRP YR+LS LR + D+P++
Sbjct: 145 MSRLTKIHARGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRNHLP---------DVPIL 195
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
ALTATA +V++D+++SL + + + +SF RPN+ + V++
Sbjct: 196 ALTATAVPKVQKDVIESLCL-QNPLVLKSSFNRPNIYYEVRY 236
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 98/215 (45%), Gaps = 31/215 (14%)
Query: 494 DLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR 553
DLL+ LS L + + I+Y R ++ +L G+ +AAY+A L
Sbjct: 238 DLLDDVYADLSKLLKSCGNVCGIVYCLERTTCDELSAHLSKNGISSAAYHAGLNNKLRSS 297
Query: 554 VHTEFHENKLEVVVATIA-----------------FGMGIDKLNVRRIIHYGWPQSLEAY 596
V ++ +K++VV+ + +GID+ +VR + H+ P+S+EA+
Sbjct: 298 VLDDWISSKIQVVINSWGFFFIFNFFLFFALFNIILSIGIDRKDVRIVCHFNIPKSMEAF 357
Query: 597 YQEAGRAGRDGHLADCVLYANL---SSMPTLLPSRR---------SEDQTKQAYRMLSDC 644
YQE+GRAGRD + +LY + M +L + + +K++ S
Sbjct: 358 YQESGRAGRDQLPSRSLLYYGIDDRKRMEFILSNAESKKLQSSSSQDGMSKKSLADFSHM 417
Query: 645 FRYGMNTSCCRAKILVEYFGEDFSHEKC-QLCDVC 678
Y +SC R KIL E FGE + C + CD C
Sbjct: 418 VEYCEGSSCRRKKIL-ENFGEQVAASICRKSCDAC 451
>gi|398825380|ref|ZP_10583678.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. YR681]
gi|398223762|gb|EJN10096.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. YR681]
Length = 621
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 139/234 (59%), Gaps = 21/234 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+L FG + Q E + +CLVL TG GKSLC+Q+P+LL +V+SPL
Sbjct: 20 SVLHSVFGLPGFRGAQGEIIRHVTDGGNCLVLMPTGGGKSLCYQLPSLLREGCGIVVSPL 79
Query: 223 ISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKP-- 277
I+LM DQ + L + GV A L S Q + +E++ + G ++YV PE RL+ P
Sbjct: 80 IALMRDQVAGLIEAGVNAAALNSSLTFQEASDIERRLIAGDLDLLYVAPE---RLVTPRC 136
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L LA+++ +ALFAIDE HCVS+WGHDFRP+Y LS++ E F D+P +ALT
Sbjct: 137 LSMLAQAK-VALFAIDEAHCVSQWGHDFRPEYVGLSIIAERFP---------DVPRIALT 186
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQ 391
ATA R++I++ L ++ +FV +SF RPN+R+ + + + S KDF +
Sbjct: 187 ATADELTRKEIVERLQLTGSPQFV-SSFDRPNIRYEIVDKRNA--VSQLKDFIR 237
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 135/285 (47%), Gaps = 21/285 (7%)
Query: 490 FERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKS 549
+E D N ++ ++E ++Y +R +A L G+ A Y+A L +
Sbjct: 220 YEIVDKRNAVSQLKDFIRERHAGDAGVVYCLSRNRVEEVAAALDEAGIAALPYHAGLDSN 279
Query: 550 QLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609
R F V+VATIAFGMGIDK +VR + H P+S+EAYYQE GRAGRDG
Sbjct: 280 VRSRNQDRFLNEDGIVIVATIAFGMGIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGKP 339
Query: 610 ADCVLYANLSSMPTLLPSRR-------SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEY 662
+ + LS ++ RR S+D + + R L D T+ CR K L+ Y
Sbjct: 340 SAAWMAYGLSD---IVQQRRMIDESSGSDDFKRVSIRKL-DALVGLAETAQCRRKRLLGY 395
Query: 663 FGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQ 722
FGE+ E C CD C+ PP+M++ K A L+ ++ +M D + G +
Sbjct: 396 FGENAHGETCGNCDNCLT-PPKMRDGKVLAQKLLSCAYRTGQRFGAMHLID-VLIGRLTE 453
Query: 723 KFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIR 766
K + K+ V I RE ++K WR + R + GY++
Sbjct: 454 KVTQFGHDKLSVFGIGRELNEKQ-------WRTVLRQLVAMGYLQ 491
>gi|373849778|ref|ZP_09592579.1| ATP-dependent DNA helicase RecQ [Opitutaceae bacterium TAV5]
gi|372475943|gb|EHP35952.1| ATP-dependent DNA helicase RecQ [Opitutaceae bacterium TAV5]
Length = 620
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 124/213 (58%), Gaps = 15/213 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L FG+S + Q+E + A LA D L TG GKS+CFQ+PAL + VV+SPLI+
Sbjct: 8 LHTTFGYSGFRPLQREIIEASLAGRDVFALLPTGGGKSMCFQLPALHRTGLTVVVSPLIA 67
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL---RGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ +L GV A +L S + + R + ++YV PE + ++ Q
Sbjct: 68 LMKDQVDQLQAAGVAATYLNSSLTSGEARSRLAGLHRSEWRLLYVAPERL--MLDNWQEN 125
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+ +A AIDE HC+S+WGHDFRP+YR+++ LRE ++P+MALTATAT
Sbjct: 126 LRAWNVAALAIDEAHCISEWGHDFRPEYRQIARLREFLP---------EVPVMALTATAT 176
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+VREDI+K L + + +V SF RPNL + V
Sbjct: 177 GRVREDIVKHLQLREPAVYV-ASFNRPNLSYRV 208
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 102/199 (51%), Gaps = 10/199 (5%)
Query: 489 SFERTDL------LNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF R +L ++P +++ + ED IIY TR A+ L G A Y
Sbjct: 198 SFNRPNLSYRVLPKDQPLKQIIDFVKKREDESGIIYCATRATAEKTAESLASRGYAARPY 257
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L F + ++++ ATIAFGMGI+K NVR +IH+ P+++E YYQE GR
Sbjct: 258 HAGLSADDRSANQELFLRDDVKIICATIAFGMGINKPNVRWVIHHDLPKNIEGYYQETGR 317
Query: 603 AGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG ADC+L ++ + + + A R L Y +T+ CR + L
Sbjct: 318 AGRDGLPADCLLLYSAGDIVKQTHFIDEITDAHEQQVARRQLRLMSHYAEDTT-CRRRTL 376
Query: 660 VEYFGEDFSHEKCQLCDVC 678
++YFGE F+ + C CD C
Sbjct: 377 LDYFGEAFAVDNCGACDNC 395
>gi|375129367|ref|YP_004991462.1| ATP-dependent DNA helicase RecQ [Vibrio furnissii NCTC 11218]
gi|315178536|gb|ADT85450.1| ATP-dependent DNA helicase RecQ [Vibrio furnissii NCTC 11218]
Length = 611
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/261 (38%), Positives = 147/261 (56%), Gaps = 34/261 (13%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
++L+ FG+ + ++ Q+E + + +A D LV+ TG GKSLC+QIPAL V VVISP
Sbjct: 17 QTILRDVFGYQTFRDGQQEVIESAVAGRDALVIMPTGGGKSLCYQIPALAREGVTVVISP 76
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS--------IIYVCPETVI- 272
LISLM DQ +L +GV A + S Q ++AL G+Y+ ++YV PE V+
Sbjct: 77 LISLMKDQVDQLKANGVAAECVNSTQ-----SREALMGIYNRMHSGQLKLLYVSPERVLT 131
Query: 273 -RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
I+ L L +A+ A+DE HC+S+WGHDFRP+Y L L++ F +
Sbjct: 132 GEFIERLHNLP----LAMIAVDEAHCISQWGHDFRPEYAALGQLKQQFP---------QV 178
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---K 386
P+MALTATA R DIL L+++ + L SF RPN+R+++ KH S Y +
Sbjct: 179 PIMALTATADDATRSDILSRLNLTDPHVY-LGSFDRPNIRYTLMEKHKPVSQVIRYLDTQ 237
Query: 387 KDFCQLIDIYTKKKKTGEKEK 407
K C +I ++KK EK
Sbjct: 238 KGHCGIIYCGSRKKVEMVTEK 258
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 110/192 (57%), Gaps = 6/192 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ + + LC ++AA Y+A + + V F + +++VVAT+AFGMG
Sbjct: 243 IIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMG 302
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ V+ A+++ + +L +
Sbjct: 303 INKPNVRFVVHFDIPRNIESYYQEPGRAGRDGLPAEAVMLYDPADIAWLRRMLDEKSDGP 362
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
Q + L+ + CR ++L+ YFGE + + C CD+C+D PP+ + EEA
Sbjct: 363 QKQVETHKLTAMSNFA-EAQTCRRQVLLNYFGE-YRDKPCGNCDICLD-PPKHFDATEEA 419
Query: 693 NILMQVIAAYNE 704
+ + N+
Sbjct: 420 RKALSCVYRVNQ 431
>gi|357406115|ref|YP_004918039.1| ATP-dependent DNA helicase RecQ [Methylomicrobium alcaliphilum 20Z]
gi|351718780|emb|CCE24454.1| ATP-dependent DNA helicase RecQ [Methylomicrobium alcaliphilum 20Z]
Length = 711
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 129/222 (58%), Gaps = 19/222 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ + Q++ + LA D LVL TG GKSLC+QIP+LL V +VISPLI
Sbjct: 8 VLNTVFGYDRFRGQQQDVIDELLAGRDALVLMPTGGGKSLCYQIPSLLRPGVGIVISPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETV--IRLIKPL 278
+LM DQ S L + GV A FL S G+ +E + ++Y+ PE + R + L
Sbjct: 68 ALMQDQVSALHQLGVNAAFLNSTLTGEEARSIENRLRDDQLDLLYIAPERLNSARTLSLL 127
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L IALFAIDE HCVS+WGHDFR DY +LS+L E + + IP +ALTA
Sbjct: 128 DNL----NIALFAIDEAHCVSQWGHDFRADYLQLSMLHERYPS---------IPRIALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380
TA + R++I+ L + + FV +SF RPN+R+ + + +
Sbjct: 175 TADERTRQEIISRLALDQAKLFV-SSFDRPNIRYRIVQKQNA 215
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 106/206 (51%), Gaps = 19/206 (9%)
Query: 487 DRSFERTDLLNKPAERLSMLQ----EPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
DR R ++ K R +LQ E D I+Y +RK+ S A++L G++A Y
Sbjct: 201 DRPNIRYRIVQKQNARQQLLQFIQSEHFGDA-GIVYCLSRKKVESTAEWLQSKGIRALPY 259
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A + + ++ F + V+VATIAFGMGIDK NVR + H P+S+EAYYQE GR
Sbjct: 260 HAGMDNAARQQHQHRFLMEEGLVIVATIAFGMGIDKPNVRFVAHLDLPKSIEAYYQETGR 319
Query: 603 AGRDGHLADCVLYANLSSMPT----LLPSRRSEDQTKQAYR----MLSDCFRYGMNTSCC 654
AGRDG AD + L + T L S E + Y ML+ C G C
Sbjct: 320 AGRDGLPADAWMAYGLQDVITLQQMLANSNADESHKRLEYHKLDAMLALCEEVG-----C 374
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVD 680
R + L+ YFG+ + + C CD C++
Sbjct: 375 RRRALLSYFGDRLA-DDCGNCDTCLE 399
>gi|348580071|ref|XP_003475802.1| PREDICTED: Bloom syndrome protein-like [Cavia porcellus]
Length = 1405
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 130/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA + V +VISPL
Sbjct: 645 IFHKKFGLHNFRTNQLEAINATLLGEDCFILMPTGGGKSLCYQLPACVLPGVTIVISPLR 704
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 705 SLIVDQVQKLTSLDIPATYLTGDKTDSEAASIYLQLSKKDPIIKLLYVTPEKVCASNRLI 764
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFRPDY+R+++LR+ F + +P+MA
Sbjct: 765 SILENLYERKLLARFVIDEAHCVSQWGHDFRPDYKRMNMLRQKFPS---------VPVMA 815
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V+ DIL L + + F + SF R NL++ V
Sbjct: 816 LTATANSRVQTDILTQLKILRPQVFSM-SFNRHNLKYYV 853
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 104/184 (56%), Gaps = 14/184 (7%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEV 565
P + G IIY +R E ++A L G+ A AY+A L + V H +++ +V
Sbjct: 872 HHPYDSG--IIYCLSRWECDTMADTLQKDGLAALAYHAGLSDAARDEVQHKWINQDGCQV 929
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMP 622
+ ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L Y +++ +
Sbjct: 930 ICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLK 989
Query: 623 TLLPSRRSEDQ-TKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL----- 674
L+ + ++ TK+ + L Y N + CR L+ YFGE+ F+ E C+
Sbjct: 990 RLIMMEKDGNRHTKETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPEFCRKHPDVS 1049
Query: 675 CDVC 678
CD C
Sbjct: 1050 CDNC 1053
>gi|21227319|ref|NP_633241.1| ATP-dependent DNA helicase [Methanosarcina mazei Go1]
gi|20905673|gb|AAM30913.1| ATP-dependent DNA helicase [Methanosarcina mazei Go1]
Length = 896
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 140/229 (61%), Gaps = 19/229 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+++S+L+++FG+++ + Q+E + L D VL TG GKS+C+Q+P+LL V VV+
Sbjct: 24 RMHSVLRQYFGYTAFRPLQEEIIRDVLDRKDVFVLMPTGGGKSICYQLPSLLLDGVTVVV 83
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ L +G+ A + S Q + V+ L ++Y+ PE RL+
Sbjct: 84 SPLISLMKDQVDGLEANGIAAACMNSTQSPRENRDVKNAFLENRLKVLYIAPE---RLMM 140
Query: 277 PLQRLAESRG-IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P +G ++LFAIDE HC+S+WGHDFRP+YR+L +LR+ K+ D+P++A
Sbjct: 141 PGTFAFLKKGKVSLFAIDEAHCISEWGHDFRPEYRKLKLLRDP------KNGFPDVPVIA 194
Query: 336 LTATATIQVREDILKSLHMS----KGTKFVLTSFFRPNLRFSVKHSKTS 380
LTATAT +V++DI+ L ++ KG + SF R NL + V+ K +
Sbjct: 195 LTATATERVKKDIVSQLGLNIDPEKGP--YVASFNRSNLYYEVRPKKDT 241
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 127/255 (49%), Gaps = 17/255 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R ++ + L G +A Y+A L S+ R F + ++++VATIAFGMG
Sbjct: 258 IIYCQSRNNVETLTRKLNLAGFRALPYHAGLSDSERSRNQEMFIRDDVDIIVATIAFGMG 317
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
I+K NVR +IHY P++LE+YYQE GR GRDG +C+L+ + + + + +E
Sbjct: 318 INKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFIAQKTNEK 377
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ + L Y CR + L+EYFGE+ S C CD C+ P + E A
Sbjct: 378 EKDISLVQLRQMVAYCEGNK-CRRQTLMEYFGEELST-PCGNCDTCLR-PKNTFDGTEAA 434
Query: 693 NILMQVIAAYNEQ--SNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLL 750
L+ I N++ +N + D + +G K +K + K+ K +++
Sbjct: 435 RKLISCIQDLNQRFGTNYVID---VLTGSKNKKIRQNRHEKL---KSHGSGREFTKEQ-- 486
Query: 751 WWRGLARIMENKGYI 765
WR LA + N G +
Sbjct: 487 -WRSLASEILNTGLL 500
>gi|225444694|ref|XP_002277754.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Vitis
vinifera]
Length = 730
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 134/222 (60%), Gaps = 21/222 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LL+ HFGH+ + Q EA+ A L+ DC L TG GKS+C+QIPAL +V+V+ PLI
Sbjct: 27 LLRWHFGHAEFRGRQLEAIEAILSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVCPLI 86
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS------IIYVCPETVIRLIKP 277
+LM +Q L + G+ A FL S Q KV K + S ++YV PE +I
Sbjct: 87 ALMENQVMALKEKGIAAEFLSSTQ-TTKVRDKIHEDLQSGKPSLRLLYVTPE-LIATPGF 144
Query: 278 LQRLAE--SRGIA-LFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ RL + +RG+ L AIDE HC+S WGHDFRP YR+LS LR + D+P++
Sbjct: 145 MSRLTKIHARGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRNHLP---------DVPIL 195
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
ALTATA +V++D+++SL + + + +SF RPN+ + V++
Sbjct: 196 ALTATAVPKVQKDVIESLCL-QNPLVLKSSFNRPNIYYEVRY 236
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 103/198 (52%), Gaps = 14/198 (7%)
Query: 494 DLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR 553
DLL+ LS L + + I+Y R ++ +L G+ +AAY+A L
Sbjct: 238 DLLDDVYADLSKLLKSCGNVCGIVYCLERTTCDELSAHLSKNGISSAAYHAGLNNKLRSS 297
Query: 554 VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV 613
V ++ +K++VVVAT+AFGMGID+ +VR + H+ P+S+EA+YQE+GRAGRD + +
Sbjct: 298 VLDDWISSKIQVVVATVAFGMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRSL 357
Query: 614 LYANL---SSMPTLLPSRR---------SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVE 661
LY + M +L + + +K++ S Y +SC R KIL E
Sbjct: 358 LYYGIDDRKRMEFILSNAESKKLQSSSSQDGMSKKSLADFSHMVEYCEGSSCRRKKIL-E 416
Query: 662 YFGEDFSHEKC-QLCDVC 678
FGE + C + CD C
Sbjct: 417 NFGEQVAASICRKSCDAC 434
>gi|395238414|ref|ZP_10416343.1| ATP-dependent helicase RecQ [Lactobacillus gigeriorum CRBIP 24.85]
gi|394477700|emb|CCI86320.1| ATP-dependent helicase RecQ [Lactobacillus gigeriorum CRBIP 24.85]
Length = 592
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 130/219 (59%), Gaps = 16/219 (7%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++LKK+FG+ + Q E + L + L + TG+GKSLC+Q+PAL+ V +VISPL
Sbjct: 6 TILKKYFGYHEFRPGQAEVIQKVLTGENVLAVMPTGAGKSLCYQVPALVNPGVTLVISPL 65
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ L ++G+ A L S P N + ++A G ++Y+ PE RL
Sbjct: 66 ISLMKDQIDSLKQNGIEAAALNSTTPQEEVNPILRQAYEGKIKLLYLTPE---RLAMDYF 122
Query: 280 RLAES-RGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
R + ++L A+DE HC+S+WGHDFRP YR++ + SL+ ++ALTA
Sbjct: 123 RYQLNFLDVSLVAVDEAHCISQWGHDFRPAYRQI--------LEGINSLRSKPNILALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHS 377
TAT V+EDI L++S+ FV+TSF RPNL F V +S
Sbjct: 175 TATPAVQEDIANQLNISRNN-FVITSFARPNLSFKVVNS 212
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 15/226 (6%)
Query: 489 SFERTDL----LNKPAERLSMLQEPLE---DGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF R +L +N P + + + + D I+Y TRK+ + +YL GV A
Sbjct: 199 SFARPNLSFKVVNSPKDTNKYIYDYINAHNDEAGIVYTNTRKKVDDLTRYLKKRGVSVAN 258
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+ + + +V +F ++++V+VAT AFGMGIDK NVR +IH +++EAYYQEAG
Sbjct: 259 YHGGMANDERTKVQDDFQFDRVQVIVATNAFGMGIDKSNVRFVIHANSTKNIEAYYQEAG 318
Query: 602 RAGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQ-AYRMLSDCFRYGMNTSCCRAK 657
RAGRDG + V+ +L++ + ++DQ K+ Y L Y NT C +
Sbjct: 319 RAGRDGAPCEAVMIFHPGDLATYRWFIDQSEADDQYKKIQYDKLHAITEYA-NTQSCLQQ 377
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYN 703
+V YFG+D C C C+D +++++ EA ++ ++ ++
Sbjct: 378 FIVRYFGQD--TPACGKCSNCLD-QRKLRDISVEAKSIINMVYEFD 420
>gi|456062890|ref|YP_007501860.1| ATP-dependent DNA helicase RecQ [beta proteobacterium CB]
gi|455440187|gb|AGG33125.1| ATP-dependent DNA helicase RecQ [beta proteobacterium CB]
Length = 627
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 134/229 (58%), Gaps = 21/229 (9%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ +L FG + Q+ + +A D LVL TG+GKSLC+QIP+L+ V VV+SP
Sbjct: 15 HQVLHDVFGFDQFRGAQESIVRHVVAGGDALVLMPTGAGKSLCYQIPSLVRRGVGVVVSP 74
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP- 277
LI+LM DQ L++ GV A FL S KV + L G +IYV PE RL+ P
Sbjct: 75 LIALMQDQVDALTQLGVRASFLNSSLDAVSSQKVTSQLLSGDLDLIYVAPE---RLMSPS 131
Query: 278 ----LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
L RL GIALFAIDE HCVS+WGHDFRP+YR+L+VL E F +P
Sbjct: 132 FLSILDRLNAGPGIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERFP---------RVPR 182
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
+ALTATA R +I++ L + +FV +SF RPN+++ V +++ +
Sbjct: 183 IALTATADAPTRAEIVERLSLESAEQFV-SSFDRPNIKYRVLQKQSAKQ 230
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 4/168 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R+ A++L G A Y+A L F + ++VAT+AFGMG
Sbjct: 246 IIYCLSRRSVEETAQWLKDRGWDAMPYHAGLSVETRSANQKRFLREEGVIMVATVAFGMG 305
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSED 632
IDK NVR + H P+S+E YYQE GRAGRDG A+ + + ++ S+ ++ S + +
Sbjct: 306 IDKPNVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMTYGFGDVVSLRQMVDSGEASE 365
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVD 680
K+ R + + CR + ++ YFGE + C CD C++
Sbjct: 366 DRKRVERQKLNALLGYCESITCRHQAILRYFGETHA-GGCGNCDNCLE 412
>gi|300024077|ref|YP_003756688.1| ATP-dependent DNA helicase RecQ [Hyphomicrobium denitrificans ATCC
51888]
gi|299525898|gb|ADJ24367.1| ATP-dependent DNA helicase RecQ [Hyphomicrobium denitrificans ATCC
51888]
Length = 728
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 126/220 (57%), Gaps = 15/220 (6%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+ FG+ + Q + + L DCL L TG GKSLC+QIP+L+ +V+SPLI+
Sbjct: 27 LEDVFGYKGFRPLQGDIIDTVLRGGDCLALMPTGGGKSLCYQIPSLVRRGTGIVVSPLIA 86
Query: 225 LMHDQCSKLSKHGVTACFLGSGQ---PDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L GV A FL S Q +++E++ ++YV PE +++ + L
Sbjct: 87 LMQDQVDALKDLGVKAAFLNSTQDRSTQDQIERQFAADALDLLYVAPERLVQ--ERTLSL 144
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
E IALFAIDE HCVS+WGHDFRP+YR+L +L + F +P +ALTATA
Sbjct: 145 LELSDIALFAIDEAHCVSQWGHDFRPEYRQLKILAQRFP---------RVPRIALTATAD 195
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
+ R+DI+ L + FV SF RPN+R+++ + S
Sbjct: 196 ERTRQDIISELSLENAASFV-ASFDRPNIRYTIAELGSGS 234
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 124/267 (46%), Gaps = 15/267 (5%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566
+ P + G I+Y +RK A +L G KA AY+A L T+F + ++
Sbjct: 246 EHPTDAG--IVYCLSRKSVEETAAWLSSKGRKALAYHAGLDAHIRAGAQTKFLTEEGLII 303
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL-- 624
VATIAFGMGIDK +VR + H P+S+E+YYQE GRAGRDG A+ + L + L
Sbjct: 304 VATIAFGMGIDKPDVRFVAHLNLPKSIESYYQETGRAGRDGEPANAWMAYGLQDIVQLRQ 363
Query: 625 -LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPP 683
+ + K R D CR + L+ YFGE + E C CD C+ PP
Sbjct: 364 WIGQSEGSEAFKTVQRQKLDALIGLAEMPGCRRQALLAYFGE-MNSEPCGNCDNCLS-PP 421
Query: 684 EMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQK 743
++ A + + ++ D + G ++ + + ++ V I +
Sbjct: 422 HTEDGTVVAQKALSAVYRTGQRFGVTYLAD-VLIGTADERVLRNGHDRLSVFGIGKDLPA 480
Query: 744 YLATDLLWWRGLARIMENKGYIREGDD 770
AT W+GL R + +GY+ GDD
Sbjct: 481 --AT----WKGLFRQLTAQGYL-TGDD 500
>gi|418054291|ref|ZP_12692347.1| ATP-dependent DNA helicase RecQ [Hyphomicrobium denitrificans
1NES1]
gi|353211916|gb|EHB77316.1| ATP-dependent DNA helicase RecQ [Hyphomicrobium denitrificans
1NES1]
Length = 728
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 127/220 (57%), Gaps = 15/220 (6%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+ FG+ + Q + + L DCL L TG GKSLC+QIP+L+ +V+SPLI+
Sbjct: 27 LEDVFGYKGFRPLQGDIIDTILRGGDCLALMPTGGGKSLCYQIPSLVRPGTGIVVSPLIA 86
Query: 225 LMHDQCSKLSKHGVTACFLGSGQ---PDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L GV A FL S Q +++E++ ++YV PE +++ + L
Sbjct: 87 LMQDQVDALRDLGVKAAFLNSTQDRSTQDQIERQFAADALDLLYVAPERLVQ--ERTLAL 144
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
E IALFAIDE HCVS+WGHDFRP+YR+L +L + F + +P +ALTATA
Sbjct: 145 FERADIALFAIDEAHCVSQWGHDFRPEYRQLKILAQRFPS---------VPRIALTATAD 195
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
+ R+DI+ L + F+ SF RPN+R+++ + S
Sbjct: 196 ERTRQDIIAELSLENARSFI-ASFDRPNIRYTIAELGSGS 234
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 120/261 (45%), Gaps = 19/261 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK A +LC G KA AY+A L +F + ++VATIAFGMG
Sbjct: 253 IVYCLSRKSVEETAAWLCSKGRKALAYHAGLEAPVRAAAQAKFLTEEGLIIVATIAFGMG 312
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSED 632
IDK +VR + H P+S+E+YYQE GRAGRDG A+ + L + L + +
Sbjct: 313 IDKPDVRFVAHLNLPKSIESYYQETGRAGRDGEAANAWMAYGLQDIVQLRQWIGQSEGPE 372
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
K R D CR + L+ YFGE E C CD C+ PP E+
Sbjct: 373 AFKTVQRQKLDALVGLAEMPGCRRQALLAYFGE-MRSEPCGNCDNCLS-PPH----TEDG 426
Query: 693 NILMQ--VIAAYNE-QSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDL 749
I+ Q + A Y Q + + G ++ + + ++ V I + +
Sbjct: 427 TIIAQKALSAVYRTGQRFGVTYLADVLIGTADERVLRNGHDRLSVFGIGKD------VPV 480
Query: 750 LWWRGLARIMENKGYIREGDD 770
W+GL R + +GY+ GDD
Sbjct: 481 STWKGLFRQLTAQGYL-TGDD 500
>gi|335419982|ref|ZP_08551025.1| ATP-dependent DNA helicase RecQ [Salinisphaera shabanensis E1L3A]
gi|334895628|gb|EGM33796.1| ATP-dependent DNA helicase RecQ [Salinisphaera shabanensis E1L3A]
Length = 604
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 137/238 (57%), Gaps = 24/238 (10%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+L+ FG+ + + Q E + HD LVL TG GKSLC+QIPAL+ V +V+SP
Sbjct: 9 QGVLQSVFGYDAFRGRQAEIIDTVCNGHDALVLMPTGGGKSLCYQIPALVRDGVAIVVSP 68
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQP-DNKV--EQKALRGMYSIIYVCPETVIRLIKP- 277
LI+LM DQ + L + GV A +L S D++V EQ ++YV PE RL++P
Sbjct: 69 LIALMADQVAALEQLGVRAAYLNSTLAFDDQVAIEQAMRANTIDLVYVAPE---RLMQPR 125
Query: 278 -LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L +A+ R I+L AIDE HCVS+WGHDFRP+YR L+ L + F ++P +AL
Sbjct: 126 MLDLVADCR-ISLLAIDEAHCVSQWGHDFRPEYRELAALADRFP---------NVPRVAL 175
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLID 394
TATA + R +I++ L + F L SF RPN+++ V + R S K+ I+
Sbjct: 176 TATADLPTRAEIIERLRLEHANVF-LHSFDRPNIQYRV-----AERGSAKQQLLDFIE 227
Score = 112 bits (280), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 116/224 (51%), Gaps = 18/224 (8%)
Query: 489 SFERTDLLNKPAERLSMLQEPL-------EDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + AER S Q+ L E I+Y +R++T A++L G A A
Sbjct: 202 SFDRPNIQYRVAERGSAKQQLLDFIEREHEGDAGIVYCLSRRKTEETAEWLTERGKTALA 261
Query: 542 YNASLPKSQLRRVH-TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP +QLR+ H F + +V AT+AFGMGIDK +VR + H P S+EAYYQE
Sbjct: 262 YHAGLP-AQLRQTHQARFLREEGVIVCATVAFGMGIDKPDVRFVAHVDLPASIEAYYQET 320
Query: 601 GRAGRDGHLADCVLYANLSSMPTLLPSRRSE-----DQTKQAYRMLSDCFRYGMNTSCCR 655
GRAGRDG A + L+ T+ SR E ++ K+ R D + CR
Sbjct: 321 GRAGRDGAPATAWMLYGLND--TVQRSRMIEQGNAPEERKRVERTKLDAMLAYCELASCR 378
Query: 656 AKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
L+ YFGE E C CD C++ PP+ + A + + I
Sbjct: 379 RVSLLGYFGEK-RDEACGNCDTCLN-PPQTYDATRFARMALSAI 420
>gi|54310561|ref|YP_131581.1| ATP-dependent DNA helicase RecQ [Photobacterium profundum SS9]
gi|46915004|emb|CAG21779.1| putative ATP-dependent DNA helicase RecQ [Photobacterium profundum
SS9]
Length = 615
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 136/227 (59%), Gaps = 17/227 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG+ S + Q+E + A + DCLV+ TG GKSLC+QIPAL+ + +VISPLI
Sbjct: 20 ILQDVFGYQSFRIGQQEVIEAVVEGQDCLVIMPTGGGKSLCYQIPALIMPGITLVISPLI 79
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL---RGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L+ +GV A ++ S +V + L G ++YV PE V+ + ++R
Sbjct: 80 SLMKDQVDQLNANGVAAAYINSTMSREEVMETFLAMREGDLKLVYVSPERVL-MRDFIER 138
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L E+ +++ A+DE HCVS+WGHDFRP+Y L L+++F ++P+MALTATA
Sbjct: 139 LYET-PLSMVAVDEAHCVSQWGHDFRPEYAALGTLKQHFE---------NLPIMALTATA 188
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY 385
R DI L ++ + L SF RPN+R+++ KH + Y
Sbjct: 189 DDTTRNDITSRLGLTNPHDY-LGSFDRPNIRYTLLEKHKPMTQLTRY 234
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 150/289 (51%), Gaps = 21/289 (7%)
Query: 487 DRSFERTDLL--NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544
DR R LL +KP +L+ + I+Y +RK IA L GV+AAAY+A
Sbjct: 213 DRPNIRYTLLEKHKPMTQLTRYLTGVRGQCGIVYCNSRKRVEQIAGKLRDSGVRAAAYHA 272
Query: 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAG 604
L + RV F + + +VVAT+AFGMGI+K NVR ++HY P+++E+YYQE GRAG
Sbjct: 273 GLDHDERGRVQESFQRDDIHIVVATVAFGMGINKPNVRFVVHYDIPRNIESYYQETGRAG 332
Query: 605 RDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYG-----MNTSCCRAKIL 659
RDG A+ V++ + S + L RR D+ ++ + + + CR ++L
Sbjct: 333 RDGLPAEAVMFYDPSDLAWL---RRCLDEKEEGAQKQVESHKLNAMGAFAEAQTCRRQVL 389
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGI 719
+ YFGE + E C CD+C+D PP+ N E A + + N QS + + G+
Sbjct: 390 LNYFGE-YREEPCGNCDICLD-PPKRFNAIEVAQKALSCVYRVN-QSFGVGYVVEVLRGM 446
Query: 720 KKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ Q+ + + K+ I RE S +Y W + R + ++G++ +
Sbjct: 447 QNQRIREHGHDKLTTYGIGREHSHEY-------WVSILRQLIHRGFLTQ 488
>gi|317151955|ref|YP_004120003.1| ATP-dependent DNA helicase RecQ [Desulfovibrio aespoeensis Aspo-2]
gi|316942206|gb|ADU61257.1| ATP-dependent DNA helicase RecQ [Desulfovibrio aespoeensis Aspo-2]
Length = 734
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 130/217 (59%), Gaps = 19/217 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG Q+ ++ +A DCLVL TG GKSLC+QIP++L V V +SPLI
Sbjct: 7 ILRSVFGFDQFIGLQQPIINNVMAGGDCLVLMPTGGGKSLCYQIPSMLRPGVGVCVSPLI 66
Query: 224 SLMHDQCSKLSKHGV-TACFLGSGQPDN--KVEQKALRGMYSIIYVCPETVIRLIKP--L 278
+LM DQ L++ GV AC S P + +VEQ+ + G ++YV PE RL +P L
Sbjct: 67 ALMQDQVQGLTQMGVRAACLNSSLDPQDAWEVEQQLVSGQLDLVYVAPE---RLCRPGFL 123
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
LA LFAIDE HCVS+WGHDFRP+Y +LSV+ E F +P +ALTA
Sbjct: 124 DLLARC-NPCLFAIDEAHCVSQWGHDFRPEYMQLSVISERFPG---------VPRLALTA 173
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
TA + DI+++L + + T + T F RPN+R++V+
Sbjct: 174 TADEPTQRDIVRNLGLERATVYA-TGFDRPNIRYAVQ 209
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 97/169 (57%), Gaps = 7/169 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+ A +L G+ A Y+A L K + R +F + V+VAT+AFGMG
Sbjct: 232 IVYRLSRKKVEQTAAFLEKNGIIALPYHAGLSKQERYRNQEQFMRGEGMVMVATVAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD---CVLYANLSSMPTLLPSRRSED 632
+DK NVR + H P+SLEAY+QE GRAGRDG A C +++ + +++ S +++
Sbjct: 292 VDKPNVRFVCHLEPPKSLEAYHQETGRAGRDGLPASAWLCFGLQDIAILRSMIESGEADE 351
Query: 633 QTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVD 680
K+ + L F + + T+ CR + L+ YFGE + C CD C++
Sbjct: 352 ARKRVEHAKLGSLFAF-LETAGCRRQALLGYFGEHTA--PCGNCDTCLN 397
>gi|46201335|ref|ZP_00055249.2| COG0514: Superfamily II DNA helicase [Magnetospirillum
magnetotacticum MS-1]
Length = 607
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 136/223 (60%), Gaps = 18/223 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK FG + + Q+E + + D LVL TG+GKSLC+Q+PAL V +V+SPLI
Sbjct: 7 ILKTVFGFPAFRGQQEEVIRHVVEGGDALVLMPTGAGKSLCYQVPALCRDGVAIVVSPLI 66
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQ-PDNK--VEQKALRGMYSIIYVCPETVIRLIKP-LQ 279
+LM +Q L++ GV A L S + PD +E++ G ++YV PE RL+ P
Sbjct: 67 ALMQNQVEALNQLGVRAAALNSARSPDEARVIERRMQAGELDLVYVAPE---RLVLPGFL 123
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L E IALFAIDE HCVS+WGHDFRP+Y +L++L E F + +P +ALTAT
Sbjct: 124 ALLEDCRIALFAIDEAHCVSQWGHDFRPEYLQLALLHERFPS---------VPRIALTAT 174
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
A R+DI + L++ +G +F+ F RPN+R+ + +K ++R
Sbjct: 175 ADGPTRKDIAERLNLQEGRQFI-AGFDRPNIRYRIA-TKNNAR 215
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 4/168 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R + A +L G G A AY+A L + F + V+VATIAFGMG
Sbjct: 235 IVYCLSRAKVEETASWLAGKGYTALAYHAGLDQPVRAANQQRFLREEGIVMVATIAFGMG 294
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSED 632
IDK +VR + H P+SLEAYYQE GRAGRDG AD + L + L + S ++ D
Sbjct: 295 IDKPDVRFVAHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLEDVGKLGQFIASSQASD 354
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVD 680
K+ R + T+ CR ++L+EYFGE H C CD C++
Sbjct: 355 AQKRIERQKLNALLGLCETTRCRRQVLLEYFGE-MGHPPCGNCDTCLE 401
>gi|417885284|ref|ZP_12529439.1| ATP-dependent DNA helicase RecQ [Lactobacillus oris F0423]
gi|341595939|gb|EGS38576.1| ATP-dependent DNA helicase RecQ [Lactobacillus oris F0423]
Length = 597
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 131/223 (58%), Gaps = 16/223 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK +FG + ++ QKE +S + + L + TG GKSLC+QIPAL+ V +V+SPLI
Sbjct: 7 VLKDNFGFKTFRSGQKEVISRVINGENVLAVMPTGGGKSLCYQIPALVKPGVTLVVSPLI 66
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRL-IKPLQ 279
SLM DQ L ++G+ A + S P N + ++A G +IYV PE RL ++ +
Sbjct: 67 SLMKDQVDALRQNGIAAAAINSTIPQEEVNPILRQAYEGQVKLIYVTPE---RLNMEYFR 123
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
I L AIDE HC+S+WGHDFRP YR+L + LK ++ALTAT
Sbjct: 124 YQLNFLPIDLVAIDEAHCISQWGHDFRPAYRQLK--------EAIDQLKSRPNILALTAT 175
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
AT V+EDI + L + K F++TSF RPN+ F V H + S+R
Sbjct: 176 ATPAVQEDIGQQLAIEK-DNFIITSFARPNISFRVVHPEKSTR 217
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 98/193 (50%), Gaps = 11/193 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIYV TR+ + YL A Y+A + + RV +F +++ +VAT AFGMG
Sbjct: 233 IIYVNTRRGVDELTTYLLEHHFAVAGYHAGMDAATRARVQDDFQFDRVSTIVATSAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT----LLPSRRSE 631
IDK NVR +IH Q++E+YYQEAGRAGRDG ++ VL + + + + S +
Sbjct: 293 IDKSNVRFVIHATAAQNIESYYQEAGRAGRDGLPSEAVLIYHPNDLRQYRWFIDQSTADD 352
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEE 691
D Y+ L Y +T C + +V YFG+D C C C D +N+++
Sbjct: 353 DYRDLQYQKLQAVANYA-STPECLQQYIVRYFGQDCP--PCGHCSNCTD----QRNVQDI 405
Query: 692 ANILMQVIAAYNE 704
QV+A E
Sbjct: 406 TAESKQVLAMVQE 418
>gi|336427847|ref|ZP_08607838.1| hypothetical protein HMPREF0994_03844 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336008596|gb|EGN38609.1| hypothetical protein HMPREF0994_03844 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 780
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 152/290 (52%), Gaps = 26/290 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
N +LK++FG+ S + Q+E +++ L D + TGSGKSLCFQ+PAL+ + +VISP
Sbjct: 4 NQILKQYFGYDSFREGQEELINSILEGRDTFGIMPTGSGKSLCFQVPALMMEGITLVISP 63
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIRLIKPL 278
LISLM DQ L++ GV A FL S N K A G Y IIYV PE + L +
Sbjct: 64 LISLMKDQVMALNQAGVHAAFLNSSLSTNQYFKALSFAKEGRYKIIYVAPERL--LTESF 121
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
A + I++ IDEVHCVS+WG DFRP Y ++ + +K L + A TA
Sbjct: 122 LEFAVNTQISMLTIDEVHCVSQWGQDFRPSYLKI--------VDFIKMLPQRPVISAFTA 173
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFF-RPNLRFSV-----KHSKTSSRASYKKDFCQL 392
TAT +VREDI+ L + F+ T+ + RPNL V K+S S D C +
Sbjct: 174 TATKEVREDIVNILELE--APFIATTGYDRPNLYLDVQSPKDKYSALREFVSLHPDQCGI 231
Query: 393 IDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYD 442
+ T+K E+ ++ D D S T + +S+ R N D YD
Sbjct: 232 VYCLTRKL----VEEVSMKLDRDGFSVTRYHAGLSDYER-QKNQDDFIYD 276
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 111/226 (49%), Gaps = 23/226 (10%)
Query: 490 FERTDL---LNKPAERLSMLQEPLE---DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYN 543
++R +L + P ++ S L+E + D I+Y TRK ++ L G Y+
Sbjct: 199 YDRPNLYLDVQSPKDKYSALREFVSLHPDQCGIVYCLTRKLVEEVSMKLDRDGFSVTRYH 258
Query: 544 ASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRA 603
A L + ++ +F ++ ++++AT AFGMGIDK NVR +IHY P+S+EAYYQE GR
Sbjct: 259 AGLSDYERQKNQDDFIYDRAQIMIATNAFGMGIDKSNVRFVIHYNMPKSIEAYYQEIGRC 318
Query: 604 GRDGHLADCVLYANLSSMPT--LLPSRRSED-----QTKQAY------RMLSDCFRYGMN 650
RDG C+LY + T L E+ +T++ R+ F Y
Sbjct: 319 SRDGEPGVCLLYYGGQDVVTNQLFVDNNQENKELDYETREIVLERDRERLRKMTF-YCFT 377
Query: 651 TSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILM 696
C R IL YFGE + C C C+ E+ ++ E A +L+
Sbjct: 378 NECLRDYIL-RYFGE-YGGNYCGNCSNCLTQFEEV-DVTEIAAVLI 420
>gi|1931649|gb|AAB65484.1| DNA helicase isolog; 74946-78841 [Arabidopsis thaliana]
Length = 665
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 141/236 (59%), Gaps = 22/236 (9%)
Query: 148 PKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQI 207
P++ D V+VN+ KK FG+ S + Q+E ++A ++ D VL TG GKSL +Q+
Sbjct: 101 PRDSSFSVDRYVQVNN--KKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQL 158
Query: 208 PALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSG-----QPDNKVEQKALRGMYS 262
PAL+ G + +VISPL+SL+ DQ L + + A L +G Q E + Y
Sbjct: 159 PALICGGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYK 218
Query: 263 IIYVCPETVIR---LIKPLQRLAESRG-IALFAIDEVHCVSKWGHDFRPDYRRLSVLREN 318
++YV PE V + L++ L+ L SRG +A F IDE HCVS+WGHDFRPDY+ L +L++
Sbjct: 219 LLYVTPEKVAKSDSLLRHLENL-NSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQK 277
Query: 319 FGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
F +IP++ALTATAT V+ED++++L + F SF RPNL +SV
Sbjct: 278 FP---------NIPVLALTATATASVKEDVVQALGLVNCVVF-RQSFNRPNLWYSV 323
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 100/197 (50%), Gaps = 27/197 (13%)
Query: 505 MLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLE 564
++E D IIY +R + +++ L FG KAA Y+ S+ Q + T++ ++++
Sbjct: 337 FIKENHFDECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEIN 396
Query: 565 VVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY--------- 615
++ AT+AFGMGI+K +VR +IH+ P+S+E Y+QE GRAGRDG + CVLY
Sbjct: 397 IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRV 456
Query: 616 --------ANLSSMPT-----LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEY 662
+ S M T R E T+ RM+ RY N CR + + +
Sbjct: 457 KHMISQGGVDQSPMATGYNRVASSGRLLETNTENLLRMV----RYCENEVECRRFLQLVH 512
Query: 663 FGEDFSHEKC-QLCDVC 678
GE F C + CD C
Sbjct: 513 LGEKFDSTNCKKTCDNC 529
>gi|189054874|dbj|BAG36927.1| unnamed protein product [Homo sapiens]
Length = 1417
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V VVISPL
Sbjct: 658 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLR 717
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE + RLI
Sbjct: 718 SLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLI 777
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 778 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 828
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 829 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 866
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 100/184 (54%), Gaps = 14/184 (7%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEV 565
P + G IIY +R+E ++A L G+ A AY+A L S V ++ ++ +V
Sbjct: 885 HHPYDSG--IIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQGGCQV 942
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL- 624
+ ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L
Sbjct: 943 ICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLK 1002
Query: 625 ---LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL----- 674
+ + T++ + L Y N + CR L+ YFGE+ F+ + C+
Sbjct: 1003 RLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVS 1062
Query: 675 CDVC 678
CD C
Sbjct: 1063 CDNC 1066
>gi|229496706|ref|ZP_04390420.1| ATP-dependent DNA helicase RecQ [Porphyromonas endodontalis ATCC
35406]
gi|229316603|gb|EEN82522.1| ATP-dependent DNA helicase RecQ [Porphyromonas endodontalis ATCC
35406]
Length = 724
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 127/216 (58%), Gaps = 18/216 (8%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK+HFG + KN Q+E + A L DC VL TG GKS+C+Q+PAL++ ++ISPLI+
Sbjct: 9 LKEHFGFETFKNHQEEIICALLEGKDCFVLMPTGGGKSMCYQLPALISEGTAIIISPLIA 68
Query: 225 LMHDQCSKLSKHGVTAC---FLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPL 278
LM +Q L + C F S ++ V Q L G ++YV PE + + +
Sbjct: 69 LMKNQVDALRSYCNDDCVVHFFNSSLRKSQMDLVRQDTLAGRTKLLYVTPECLTK--EEN 126
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
Q +S I+ FAIDE HC+S+WGHDFRP+YR++ + + G P++ALTA
Sbjct: 127 QAFLQSISISFFAIDEAHCISEWGHDFRPEYRKIRPMIDVIGRR---------PIIALTA 177
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TAT +V DIL++L + + F +SF RPNL +S+
Sbjct: 178 TATPKVEHDILRTLQIPQAHIF-RSSFNRPNLFYSI 212
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 121/233 (51%), Gaps = 18/233 (7%)
Query: 475 FYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG 534
FY P ++ D DR+ R L N P + G I+Y +R + + AK L
Sbjct: 209 FYSILP-KNEDVDRNIVRFVLSN-----------PQKSG--IVYCMSRSKVTTFAKILRI 254
Query: 535 FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLE 594
G++A Y+A L + F + +V+VATIAFGMGIDK +VR +IHY P+SLE
Sbjct: 255 NGIRALPYHAGLDAQERAANQDAFLSEECQVIVATIAFGMGIDKPDVRFVIHYDMPKSLE 314
Query: 595 AYYQEAGRAGRDGHLADCVLYANLSSMPTL--LPSRRSEDQTKQAYRMLSDCFRYGMNTS 652
YYQE GRAGRDG C+ Y + S M L +S + + ++L++ Y ++
Sbjct: 315 GYYQETGRAGRDGGEGVCIAYYSQSDMQRLEKFMQDKSNSEREIGKQLLAETSNYA-ESA 373
Query: 653 CCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQ 705
CR K+L+ YFGE++ E C CD C ++ N E L++ + A E+
Sbjct: 374 LCRRKLLLHYFGEEYREENCGNCDNCTMSKKKL-NASEWLQSLIETVLALKEK 425
>gi|158290315|ref|XP_311930.4| AGAP002967-PA [Anopheles gambiae str. PEST]
gi|157017834|gb|EAA07614.4| AGAP002967-PA [Anopheles gambiae str. PEST]
Length = 1425
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 136/244 (55%), Gaps = 22/244 (9%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
++ K+ FG + + Q + ++A L +DC VL TG GKSLC+Q+PA+LT + +V
Sbjct: 639 ARLQVAFKETFGLRTFRPIQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAVLTVGLTIV 698
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS------IIYVCPETV- 271
+SPL SL+ DQ KL+ + A L SG+ + Q+ +YS ++YV PE +
Sbjct: 699 VSPLKSLILDQVQKLNSLDIPAGHL-SGEANMADVQRIYDDLYSSCPELKLLYVTPEKIS 757
Query: 272 --IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKF 329
+ L L + IDE HCVS WGHDFRPDY++LS LRE F
Sbjct: 758 SSAKFQNLLSALYRRSLLGRIVIDEAHCVSAWGHDFRPDYKKLSALREQFPT-------- 809
Query: 330 DIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDF 389
+P++ALTATA +VR DIL L +++ T++ L SF RPNL++ V K S K +
Sbjct: 810 -VPIIALTATANPRVRMDILAQLKLARDTRWFLCSFNRPNLKYLVLPKKG---VSTKAEM 865
Query: 390 CQLI 393
+LI
Sbjct: 866 IELI 869
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 109/195 (55%), Gaps = 20/195 (10%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
AE + ++++ I+Y ++KE +A G+KA +Y+A L E+
Sbjct: 863 AEMIELIRKRFPRDTGIVYCLSKKECDQLADEFRRAGIKAKSYHAGLSDGVREATQKEWI 922
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
++++VV ATIAFGMGIDK +VR ++HY P+S+E YYQE+GRAGRDG +A CVLY N S
Sbjct: 923 GDRIKVVCATIAFGMGIDKPDVRYVLHYCMPKSIEGYYQESGRAGRDGEIATCVLYYNYS 982
Query: 620 SMPTLLPSRRSED-------QTKQAYRMLSDCFR---YGMNTSCCRAKILVEYFGEDFSH 669
M L R+ D + KQ + +++ FR Y N + CR +EYF E F+
Sbjct: 983 DM---LRYRKMMDNDTSISLEAKQIH--MNNLFRMVNYCENVTDCRRTQQLEYFAEYFTS 1037
Query: 670 EKC-----QLCDVCV 679
E+C CD C+
Sbjct: 1038 EQCLANRETACDNCL 1052
>gi|412985574|emb|CCO19020.1| predicted protein [Bathycoccus prasinos]
Length = 1352
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 135/248 (54%), Gaps = 30/248 (12%)
Query: 144 AVSCPKEVEIGSDWEVKVNSL--------LKKHFGHSSLKNFQKEALSAWLAHHDCLVLA 195
AV C G W K N L L+ +FG + Q +A++A +A D LVL
Sbjct: 449 AVQCQMTEADGGKWNQK-NFLWTKDCYYALRNNFGAQDYRGLQLQAINATMAGKDTLVLM 507
Query: 196 ATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK 255
TG GKSLC+Q+PA++ V +V+ PLISL+ DQ S L + + AC LG+ N E
Sbjct: 508 PTGGGKSLCYQLPAIVRDGVTIVVCPLISLIQDQLSNLEQLDIKACLLGAYNAKNDAE-- 565
Query: 256 ALRGMYS------IIYVCPETVI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFR 306
+Y ++YV PE + +LI ++ L + F IDE HC+S WGHDFR
Sbjct: 566 VYNDLYGPEPKIKLLYVTPEKLSMSNKLINLMKSLHRKGRLQRFVIDEAHCISSWGHDFR 625
Query: 307 PDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFF 366
DY+ L VL+ F DIP+MALTATAT++V++DI++ L ++ +F T+F
Sbjct: 626 KDYKELRVLKHQFP---------DIPVMALTATATVRVQDDIVRQLGLANCVRF-FTTFN 675
Query: 367 RPNLRFSV 374
R N+ + V
Sbjct: 676 RTNITYEV 683
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 98/182 (53%), Gaps = 20/182 (10%)
Query: 516 IIYVPTRKETLSIAKYLC---------GFGVKAAAYNASLPKSQLRRVHTEFHEN-KLEV 565
I+Y ++ + +A LC G+KA Y+A L ++R+ H E N +
Sbjct: 716 IVYCFSKNDCEKMANALCLKNNQDSRFRHGIKALPYHAGL-DDKVRKAHQEAWTNDTCNI 774
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMP 622
+ ATIAFGMGI+K +VR + H+ P+SLEAY+QE+GRAGRDG A CVL+ +++
Sbjct: 775 ICATIAFGMGINKPDVRYVFHHSMPKSLEAYHQESGRAGRDGEKALCVLFYSWGDVTKAR 834
Query: 623 TLLPSRRSEDQTKQAYRM-----LSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ-LCD 676
++L +D +M L Y NT+ CR L+ +F E+F +C+ +CD
Sbjct: 835 SMLIDSAEKDNAPHEVKMNKLESLVTMCTYCENTADCRRTQLLRHFNENFDRSRCKGMCD 894
Query: 677 VC 678
C
Sbjct: 895 CC 896
>gi|431927011|ref|YP_007240045.1| ATP-dependent DNA helicase RecQ [Pseudomonas stutzeri RCH2]
gi|431825298|gb|AGA86415.1| ATP-dependent DNA helicase RecQ [Pseudomonas stutzeri RCH2]
Length = 707
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 133/220 (60%), Gaps = 19/220 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ + + Q + + D LVL TG GKSLC+Q+PALL + VV+
Sbjct: 4 QAQRILKDVFGYDAFRGNQGAIIERVGSGGDALVLMPTGGGKSLCYQVPALLRDGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG-QPDNK--VEQKALRGMYSIIYVCPETVI--RL 274
SPLI+LM DQ + L + GV+A L S PD + + ++ R ++Y+ PE ++ R+
Sbjct: 64 SPLIALMDDQVATLDELGVSAVALNSTLSPDEQRDIAERIRRNEIKMLYLAPERLVQPRM 123
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ LQRL IALFAIDE HCVS+WGHDFRP+Y +L L E F +P +
Sbjct: 124 LAFLQRLE----IALFAIDEAHCVSQWGHDFRPEYMQLGQLSELFPG---------VPRI 170
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA ++ RE+I++ LH+ +F L+SF RPN+ + +
Sbjct: 171 ALTATADMRTREEIVQRLHLENAERF-LSSFDRPNIFYRI 209
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 107/204 (52%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L L E D I+Y +RK+ A +L G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLGFLAERRGDA-GIVYCMSRKKVDDFAAFLTEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP ++LR H + F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NELRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSS---MPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD + L + +L + +++ K+ + D + CR +
Sbjct: 317 GRAGRDGLPADAWMAYGLQDVIFLKQMLNNSEGDERHKRVEQHKLDAMLALCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF E+ C CD CVDG
Sbjct: 377 ALLAYFDEELP-SPCGHCDNCVDG 399
>gi|429214436|ref|ZP_19205599.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. M1]
gi|428154722|gb|EKX01272.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. M1]
Length = 714
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 129/220 (58%), Gaps = 19/220 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ + + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRILKDVFGYDAFRGNQARIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLTVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVI--RL 274
SPLI+LM DQ + L + GV L S + + + RG ++Y+ PE ++ R+
Sbjct: 64 SPLIALMEDQVATLDELGVPVAALNSSLSPEAQRDIAARLQRGEIKLLYLAPERLVQPRM 123
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ LQRL + LFAIDE HCVS+WGHDFRP+Y +L L E F D+P +
Sbjct: 124 LDFLQRL----NVGLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFP---------DVPRI 170
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA ++ RE++++ LH+ +F L+SF RPN+ + +
Sbjct: 171 ALTATADMRTREEMIQRLHLQNAEQF-LSSFDRPNIFYRI 209
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 96/175 (54%), Gaps = 16/175 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
I+Y +RK+ +A++L G A Y+A L ++LR H + F + ++VATIAFGM
Sbjct: 232 IVYCLSRKKVEEVAEFLSNQGFPALPYHAGL-SNELRAFHQKRFLNEEGLIMVATIAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSE 631
GIDK NVR + H P+SLEAYYQE GRAGRDG AD + L + L + + +
Sbjct: 291 GIDKPNVRFVAHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVLLLRQMMQNSEGD 350
Query: 632 DQTKQAYR-----MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
++ K+ R ML+ C CR + L+ YF E + C CD CVDG
Sbjct: 351 ERHKRVERHKLEAMLALC-----EEPRCRRQALLAYFDEVMPN-PCGHCDNCVDG 399
>gi|59710677|ref|YP_203453.1| ATP-dependent DNA helicase RecQ [Vibrio fischeri ES114]
gi|59478778|gb|AAW84565.1| ATP-dependent DNA helicase [Vibrio fischeri ES114]
Length = 611
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 146/255 (57%), Gaps = 24/255 (9%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++LK FG+ + Q+E ++A L DCLV+ TG GKSLC+QIPAL+ + +VISPL
Sbjct: 18 TVLKDVFGYQEFRVGQEEVINAVLDSKDCLVIMPTGGGKSLCYQIPALVFEGLTLVISPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL-----RGMYSIIYVCPETVIRLIKP 277
ISLM DQ +L +GV A L S + EQ A+ G ++YV PE V +++
Sbjct: 78 ISLMKDQVDQLKANGVKAECLNST--IEREEQIAIWNRVNSGQVKMLYVSPERV--MMRD 133
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
ES + + A+DE HC+S+WGHDFRP+Y L +++ F + +P+MALT
Sbjct: 134 FMDRLESLNLCMIAVDEAHCISQWGHDFRPEYASLGQIKQRFPS---------VPIMALT 184
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---KKDFCQL 392
ATA R+DIL L + + ++ L SF RPN+R++V KH S Y +K+ C +
Sbjct: 185 ATADEATRKDILHRLSLPEPHQY-LGSFDRPNIRYTVLEKHKPVSQIVRYLATQKNQCGV 243
Query: 393 IDIYTKKKKTGEKEK 407
I ++KK EK
Sbjct: 244 IYCGSRKKVEMLTEK 258
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 152/301 (50%), Gaps = 37/301 (12%)
Query: 489 SFERTDLL------NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ +KP ++ ++ +IY +RK+ + + LC ++AA+Y
Sbjct: 210 SFDRPNIRYTVLEKHKPVSQIVRYLATQKNQCGVIYCGSRKKVEMLTEKLCNNHIRAASY 269
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L + V F + +++VVAT+AFGMGI+K NVR + H+ P+++E+YYQE GR
Sbjct: 270 HAGLDLDERNYVQEAFQRDDIQIVVATVAFGMGINKSNVRFVAHFDIPKNIESYYQETGR 329
Query: 603 AGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTS-----CCRAK 657
AGRDG A+ V+ + + + L R+ ++ + + L + + T+ CR +
Sbjct: 330 AGRDGLPAEAVMLYDPADIVWL---RKLVEEKPEGPQKLVESHKLNAMTAFAEAQTCRRQ 386
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYS 717
+L+ YFGE +S + C CDVC+D PP+ + E A + + N QS + +
Sbjct: 387 VLLNYFGE-YSAKPCGNCDVCLD-PPKQFDGTEAAQKALSCVYRVN-QSFGVGYVVEVLR 443
Query: 718 GIKKQKFMDRPNLKMFVSKIREQSQKYLATDLL-------WWRGLARIMENKGYIREGDD 770
G+K +++IRE L+T + +W + R + +KG + +
Sbjct: 444 GLK-------------IARIREHGHDKLSTYGIGKEHTHEYWVSIIRQLIHKGLLVQNIT 490
Query: 771 R 771
R
Sbjct: 491 R 491
>gi|327265368|ref|XP_003217480.1| PREDICTED: Bloom syndrome protein homolog [Anolis carolinensis]
Length = 1383
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 133/228 (58%), Gaps = 18/228 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + Q+EA++A L DC VL TG GKSLC+Q+PA + V +VISPL
Sbjct: 637 VFHKRFGLHHFRTNQQEAINAALLGEDCFVLMPTGGGKSLCYQLPACILVGVTIVISPLR 696
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D + + ++ + ++YV PE V RL+
Sbjct: 697 SLIVDQVQKLTSMDIPATYLTGDKTDAEASRIYMQLSKKDPIIKLLYVTPEKVCSSGRLM 756
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L + + +A F IDE HCVS+WGHDFR DY+RL++LR+ F + +P+MA
Sbjct: 757 STLENLYQRQLLARFVIDEAHCVSQWGHDFRQDYKRLNMLRKKFAS---------VPMMA 807
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
LTATA +V++DIL L M K F + SF R NL++ V + S A
Sbjct: 808 LTATANPRVQKDILNQLEMLKPQVFSM-SFNRHNLKYDVLPKRPKSVA 854
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVV 567
P + G IIY +R E S+A L G+ A AY+A LP V ++ +++ +++
Sbjct: 866 PYDSG--IIYCLSRYECDSMASNLQKAGLSALAYHAGLPDETRDIVQQKWINQDGCQIIC 923
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--- 624
ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG + C+L+ + S + L
Sbjct: 924 ATIAFGMGIDKPDVRFVIHASLPKSIEGYYQESGRAGRDGERSHCLLFYSYSDVTRLRRL 983
Query: 625 -LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQ-----LCD 676
L + T+Q + L Y N CR L+ YFGE F+ + C+ CD
Sbjct: 984 ILMEKDGNSHTRQTHFNNLYSMVHYCENVVECRRIQLLAYFGETGFNPKFCKEYPEVSCD 1043
Query: 677 VCVDGPP-EMKNLKEEANILMQVIAAY 702
C MKN+ EE +++ + +
Sbjct: 1044 NCCKVQDYNMKNVTEEVKSIVRFVQEH 1070
>gi|76810512|ref|YP_335147.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 1710b]
gi|76579965|gb|ABA49440.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 1710b]
Length = 647
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 131/219 (59%), Gaps = 21/219 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV----VVI 219
+L + FG+ + + Q E + A DCLVL TG GKSLC+QIPAL+ + +V+
Sbjct: 39 ILNEVFGYPAFRGQQGEIVEHVAAGGDCLVLMPTGGGKSLCYQIPALVRSEAGRGAGIVV 98
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + LS+ GV A +L S + ++ALR G ++YV PE RL+
Sbjct: 99 SPLIALMQDQVAALSEVGVRAAYLNSTLSGAEAAATERALRDGDIDLLYVAPE---RLMT 155
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P L E I LFAIDE HCVS+WGHDFRP+Y +LSVL E F D+P +A
Sbjct: 156 PRFLDLLERARIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------DVPRIA 206
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA R++I++ L + FV +SF RPN+R+ +
Sbjct: 207 LTATADAITRDEIVQRLALDDARIFV-SSFDRPNIRYRI 244
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 11/195 (5%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVV- 567
DG T ++Y +R++ A++L GV+A Y+A + + ++R+ H E + + VV+
Sbjct: 266 DGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGM-EFEIRQKHQEMFQREEGVVMC 324
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 325 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPANAWMAYGLGDVVQQRKM 384
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D T+ CR L+ YFGE + C CD C++ PP
Sbjct: 385 IDESEADDTHKRVQTSKLDALLGLCETASCRRVRLLAYFGE--TSGPCGNCDTCLE-PPA 441
Query: 685 MKNLKEEANILMQVI 699
+ EA + + +
Sbjct: 442 TWDATREAQMALSCV 456
>gi|183600296|ref|ZP_02961789.1| hypothetical protein PROSTU_03856 [Providencia stuartii ATCC 25827]
gi|188020087|gb|EDU58127.1| ATP-dependent DNA helicase RecQ [Providencia stuartii ATCC 25827]
Length = 608
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 131/217 (60%), Gaps = 19/217 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+L FG+ S + Q+ + A L + DCLVL TG GKSLC+Q+PAL+ V +V+SPL
Sbjct: 15 SILNNTFGYQSFRPGQEAVIRAILDNRDCLVLMPTGGGKSLCYQVPALVKEGVTLVVSPL 74
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKP-- 277
ISLM DQ +L HG+ A L S Q + V +G ++YV PE RL+
Sbjct: 75 ISLMKDQVDQLRLHGIKAACLNSSQTAQEQRDVMALCAQGAIKLLYVAPE---RLLTDYF 131
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L +L+ S I+L A+DE HCVS+WGHDFRP+YR + LR++F D+P+MALT
Sbjct: 132 LSQLS-SWNISLLAVDEAHCVSQWGHDFRPEYRAIGQLRQHFP---------DVPIMALT 181
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ATA R DI++ L + ++SF RPN+R+++
Sbjct: 182 ATADETTRADIVRLLALHDPL-IQISSFDRPNIRYTL 217
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 107/198 (54%), Gaps = 13/198 (6%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP ++L + + I+Y +R + A+ L G+ AAY+A L Q V
Sbjct: 222 KPLDQLWFFIKAQKGKAGIVYCNSRSKVEETAERLQKRGLSVAAYHAGLDNQQREWVQDA 281
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F ++ L++VVAT+AFGMGI+K NVR + H+ P+++EAYYQE GRAGRDG A+ VL+ +
Sbjct: 282 FLKDNLQIVVATVAFGMGINKSNVRFVAHFDIPRNIEAYYQETGRAGRDGVEAEAVLFYD 341
Query: 618 LSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMN-------TSCCRAKILVEYFGEDFSHE 670
+ M L RR ++ + D R+ +N CR +L+ YFGE+
Sbjct: 342 PADMAWL---RRCLEEKPAGLQ--QDIERHKLNAIAAFAEAQTCRRLVLLNYFGEN-RQA 395
Query: 671 KCQLCDVCVDGPPEMKNL 688
C CD+C+D P + L
Sbjct: 396 PCGNCDICLDPPKQYDGL 413
>gi|4557365|ref|NP_000048.1| Bloom syndrome protein [Homo sapiens]
gi|1705486|sp|P54132.1|BLM_HUMAN RecName: Full=Bloom syndrome protein; AltName: Full=DNA helicase,
RecQ-like type 2; Short=RecQ2; AltName: Full=RecQ
protein-like 3
gi|1072122|gb|AAA87850.1| Bloom's syndrome protein [Homo sapiens]
gi|58003498|gb|AAW62255.1| Bloom syndrome [Homo sapiens]
gi|62739395|gb|AAH93622.1| Bloom syndrome [Homo sapiens]
gi|75517719|gb|AAI01568.1| Bloom syndrome [Homo sapiens]
gi|92096020|gb|AAI15033.1| Bloom syndrome [Homo sapiens]
gi|92097932|gb|AAI15031.1| Bloom syndrome [Homo sapiens]
gi|119622513|gb|EAX02108.1| Bloom syndrome, isoform CRA_b [Homo sapiens]
Length = 1417
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V VVISPL
Sbjct: 658 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLR 717
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE + RLI
Sbjct: 718 SLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLI 777
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 778 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 828
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 829 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 866
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 101/184 (54%), Gaps = 14/184 (7%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEV 565
P + G IIY +R+E ++A L G+ A AY+A L S V ++ +++ +V
Sbjct: 885 HHPYDSG--IIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQV 942
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL- 624
+ ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L
Sbjct: 943 ICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLK 1002
Query: 625 ---LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL----- 674
+ + T++ + L Y N + CR L+ YFGE+ F+ + C+
Sbjct: 1003 RLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVS 1062
Query: 675 CDVC 678
CD C
Sbjct: 1063 CDNC 1066
>gi|452209801|ref|YP_007489915.1| ATP-dependent DNA helicase RecQ [Methanosarcina mazei Tuc01]
gi|452099703|gb|AGF96643.1| ATP-dependent DNA helicase RecQ [Methanosarcina mazei Tuc01]
Length = 876
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 140/229 (61%), Gaps = 19/229 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+++S+L+++FG+++ + Q+E + L D VL TG GKS+C+Q+P+LL V VV+
Sbjct: 4 RMHSVLRQYFGYTAFRPLQEEIIRDVLDRKDVFVLMPTGGGKSICYQLPSLLLDGVTVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ L +G+ A + S Q + V+ L ++Y+ PE RL+
Sbjct: 64 SPLISLMKDQVDGLEANGIAAACMNSTQSPRENRDVKNAFLENRLKVLYIAPE---RLMM 120
Query: 277 PLQRLAESRG-IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P +G ++LFAIDE HC+S+WGHDFRP+YR+L +LR+ K+ D+P++A
Sbjct: 121 PGTFAFLKKGKVSLFAIDEAHCISEWGHDFRPEYRKLKLLRDP------KNGFPDVPVIA 174
Query: 336 LTATATIQVREDILKSLHMS----KGTKFVLTSFFRPNLRFSVKHSKTS 380
LTATAT +V++DI+ L ++ KG + SF R NL + V+ K +
Sbjct: 175 LTATATERVKKDIVSQLGLNIDPEKGP--YVASFNRSNLYYEVRPKKDT 221
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 127/255 (49%), Gaps = 17/255 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R ++ + L G +A Y+A L S+ R F + ++++VATIAFGMG
Sbjct: 238 IIYCQSRNNVETLTRKLNLAGFRALPYHAGLSDSERSRNQEMFIRDDVDIIVATIAFGMG 297
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
I+K NVR +IHY P++LE+YYQE GR GRDG +C+L+ + + + + +E
Sbjct: 298 INKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFIAQKTNEK 357
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ + L Y CR + L+EYFGE+ S C CD C+ P + E A
Sbjct: 358 EKDISLVQLRQMVAYCEGNK-CRRQTLMEYFGEELST-PCGNCDTCLR-PKNTFDGTEAA 414
Query: 693 NILMQVIAAYNEQ--SNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLL 750
L+ I N++ +N + D + +G K +K + K+ K +++
Sbjct: 415 RKLISCIQDLNQRFGTNYVID---VLTGSKNKKIRQNRHEKL---KSHGSGREFTKEQ-- 466
Query: 751 WWRGLARIMENKGYI 765
WR LA + N G +
Sbjct: 467 -WRSLASEILNTGLL 480
>gi|316936302|ref|YP_004111284.1| ATP-dependent DNA helicase RecQ [Rhodopseudomonas palustris DX-1]
gi|315604016|gb|ADU46551.1| ATP-dependent DNA helicase RecQ [Rhodopseudomonas palustris DX-1]
Length = 617
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 141/235 (60%), Gaps = 23/235 (9%)
Query: 146 SCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLC 204
S P+E + D + ++ S L FG SS + Q+EA+ +A D LVL TG GKSLC
Sbjct: 4 SAPRETD--DDLDARMLSTLNHVFGLSSFRG-QQEAIVRHVADGGDALVLMPTGGGKSLC 60
Query: 205 FQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMY 261
+Q+PALL VV+SPLI+LM DQ + L + GV A L S + +EQ+ L+G
Sbjct: 61 YQLPALLRDGCGVVVSPLIALMRDQVAGLLESGVRAAALNSTLSYDEASAIEQQLLKGEL 120
Query: 262 SIIYVCPETVIRLIKP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENF 319
++YV PE RL+ P L LA ++ IALFAIDE HCVS+WGHDFRP+Y LS + E F
Sbjct: 121 DLLYVAPE---RLLTPRCLGLLARAK-IALFAIDEAHCVSQWGHDFRPEYVGLSAIAEKF 176
Query: 320 GANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++P +ALTATA R +I + L ++ FV +SF RPN+R+S+
Sbjct: 177 P---------NVPRIALTATADALTRREIAERLALTDAPCFV-SSFDRPNIRYSI 221
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 100/196 (51%), Gaps = 9/196 (4%)
Query: 493 TDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLR 552
D N PA+ + + + ++Y +R + IA+ L G+ A Y+A LP
Sbjct: 222 VDKQNAPAQLKAFIDDRHRGHSGVVYCLSRAKVEDIAETLSKSGLTALPYHAGLPPDARA 281
Query: 553 RVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC 612
R F V+VATIAFGMGIDK +VR + H P+S+EAYYQE GRAGRDG ++
Sbjct: 282 RNQDRFLNEDGIVIVATIAFGMGIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGKPSEA 341
Query: 613 VLYANLSSMPTLLPSRRSEDQT--KQAYRMLS----DCFRYGMNTSCCRAKILVEYFGED 666
+ LS ++ RR D++ A++ +S D ++ CR L+ YFGE
Sbjct: 342 WMAYGLSD---IVQQRRMIDESSGSDAFKRVSMGKLDALVGLCESTGCRRTRLLGYFGET 398
Query: 667 FSHEKCQLCDVCVDGP 682
HE C CD C+ P
Sbjct: 399 AQHESCGNCDNCLTPP 414
>gi|182681205|ref|YP_001829365.1| ATP-dependent DNA helicase RecQ [Xylella fastidiosa M23]
gi|386084704|ref|YP_006000986.1| ATP-dependent DNA helicase RecQ [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|417559225|ref|ZP_12210177.1| Superfamily II DNA helicase [Xylella fastidiosa EB92.1]
gi|182631315|gb|ACB92091.1| ATP-dependent DNA helicase RecQ [Xylella fastidiosa M23]
gi|307579651|gb|ADN63620.1| ATP-dependent DNA helicase RecQ [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|338178204|gb|EGO81197.1| Superfamily II DNA helicase [Xylella fastidiosa EB92.1]
Length = 600
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 128/224 (57%), Gaps = 15/224 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
++L++ FG+ + + Q+ + A HD LVL TG GKSLC+Q+PALL + VVISP
Sbjct: 8 QTVLQRVFGYDTFRGPQQAIIEHVAAGHDALVLMPTGGGKSLCYQVPALLRKGIGVVISP 67
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ L + GV A +L S ++E + ++Y+ PE + L
Sbjct: 68 LIALMQDQVETLRQLGVRAAYLNSTLDATQAQRIEHALVTADLDLLYIAPERL--LTAHF 125
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + +P +ALTA
Sbjct: 126 LSLLERSQIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HVPRIALTA 176
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
TA + +I + L +S F+ +SF RPN+R++V R
Sbjct: 177 TADPPTQREIAERLDLSDAHHFI-SSFDRPNIRYTVVQKNNMRR 219
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 10/200 (5%)
Query: 489 SFERTDLLNKPAERLSM---LQEPL---EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ ++ +M LQE L + I+Y +R++T IA YLC G A Y
Sbjct: 201 SFDRPNIRYTVVQKNNMRRQLQEFLSRHRNTAGIVYAMSRRKTEEIAAYLCTQGYNALPY 260
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A LP + F + V+ ATIAFGMGI+K +VR + H P+SLE YYQE GR
Sbjct: 261 HAGLPAETRAKHQRCFLREEGIVMCATIAFGMGINKPDVRFVAHIDLPKSLEGYYQETGR 320
Query: 603 AGRDGHLAD---CVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A+ C ++ + ++ + + K R D + CR ++L
Sbjct: 321 AGRDGEAAEAWMCYSLGDVVLLKQMIEQSEASEARKCVERAKLDHLLGYCESMQCRRQLL 380
Query: 660 VEYFGEDFSHEKCQLCDVCV 679
+ FGE + + C CD C+
Sbjct: 381 LSSFGETYPN-PCGNCDNCL 399
>gi|241765486|ref|ZP_04763451.1| ATP-dependent DNA helicase RecQ [Acidovorax delafieldii 2AN]
gi|241364740|gb|EER59740.1| ATP-dependent DNA helicase RecQ [Acidovorax delafieldii 2AN]
Length = 618
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 132/229 (57%), Gaps = 19/229 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVV 217
S+L+ FG+ + Q+ + +A D LVL TG GKSLC+Q+PA++ + V +
Sbjct: 5 QSVLRDVFGYEQFRGPQQAIVEHVIAGSDALVLMPTGGGKSLCYQVPAIVRQRQGRGVTI 64
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR---GMYSIIYVCPETV--I 272
V+SPLI+LMHDQ L + GV A FL S ++ + LR G +++Y PE +
Sbjct: 65 VVSPLIALMHDQVGALHEAGVDAAFLNSTLSFDEAQDVELRLQTGDITLLYAAPERLNTP 124
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
R + L L ++LFAIDE HCVS+WGHDFRP+YR L+VL E + +P
Sbjct: 125 RFLGILDSLYRGGHLSLFAIDEAHCVSQWGHDFRPEYRALTVLHERYAG---------VP 175
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
+ALTATA R DI++ L + F+ +SF RPN+R+++ K ++
Sbjct: 176 RIALTATADALTRADIIERLQLEDARLFI-SSFDRPNIRYTIVEKKDAT 223
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 101/198 (51%), Gaps = 12/198 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
++Y +RK +A LC G+ A Y+A L ++ F + V+VATIAFGMG
Sbjct: 240 VVYCQSRKRVEELAATLCDAGITALPYHAGLDTKVRQKNQDRFLREEGIVMVATIAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT- 634
IDK +VR + H P+++E YYQE GRAGRDG AD + L+ ++ RR D++
Sbjct: 300 IDKPDVRFVAHVDMPKNIEGYYQETGRAGRDGLNADAWMAYGLND---VVNQRRMIDESP 356
Query: 635 -----KQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLK 689
KQA R D + CR L+ YFGE + C CD C++ PP + +
Sbjct: 357 AGEEFKQALRGKLDALLALAEATDCRRVRLLAYFGEQST--PCGNCDNCLN-PPAVWDAT 413
Query: 690 EEANILMQVIAAYNEQSN 707
+ A L+ I ++ S
Sbjct: 414 DAARKLLSTIYRVSQASG 431
>gi|170729924|ref|YP_001775357.1| ATP-dependent DNA helicase [Xylella fastidiosa M12]
gi|167964717|gb|ACA11727.1| ATP-dependent DNA helicase [Xylella fastidiosa M12]
Length = 600
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 15/217 (6%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
++L++ FG+ + + Q+ + A HD LVL TG GKSLC+Q+PALL + VVIS
Sbjct: 7 TQTVLQRVFGYDTFRGPQQAIIEHVAAGHDALVLMPTGGGKSLCYQVPALLRKGIGVVIS 66
Query: 221 PLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ L + GV A +L S ++E + ++Y+ PE + L
Sbjct: 67 PLIALMQDQVETLRQLGVRAAYLNSTLDATQAQRIEHALVTADLDLLYIAPERL--LTAH 124
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + +P +ALT
Sbjct: 125 FLSLLERSQIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HVPRIALT 175
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ATA + +I + L +S F+ +SF RPN+R++V
Sbjct: 176 ATADPPTQREIAERLDLSDAHHFI-SSFDRPNIRYTV 211
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 10/200 (5%)
Query: 489 SFERTDLLNKPAERLSM---LQEPL---EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ ++ +M LQE L + I+Y +R++T IA YLC G A Y
Sbjct: 201 SFDRPNIRYTVVQKNNMRRQLQEFLSRHRNTAGIVYAMSRRKTEEIAAYLCTQGYNALPY 260
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A LP + F + V+ ATIAFGMGI+K +VR + H P+SLE YYQE GR
Sbjct: 261 HAGLPAETRAKHQRCFLREEGIVMCATIAFGMGINKPDVRFVAHIDLPKSLEGYYQETGR 320
Query: 603 AGRDGHLAD---CVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A+ C ++ + ++ + + K R D + CR ++L
Sbjct: 321 AGRDGEAAEAWMCYSLGDVVLLKQMIEQSEASEARKCVERAKLDHLLGYCESMQCRRQLL 380
Query: 660 VEYFGEDFSHEKCQLCDVCV 679
+ FGE + + C CD C+
Sbjct: 381 LSSFGETYPN-PCGNCDNCL 399
>gi|398962918|ref|ZP_10679405.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM30]
gi|398150315|gb|EJM38913.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM30]
Length = 709
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIKRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + + IALFAIDE HCVS+WGHDFRP+Y +L L E F D+P +A
Sbjct: 121 PRMLSFLQGLNIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I+ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVTRLHLQNAERF-LSSFDRPNIFYRI 209
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 108/204 (52%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +L G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLAERRSDA-GIVYCLSRKKVEEVAAFLSEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP + LR H + F + ++VAT+AFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NDLRAYHQKRFLNEEGLIMVATVAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GR GRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 317 GRGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED E C CD CVDG
Sbjct: 377 TLLAYFDEDMP-EPCGHCDNCVDG 399
>gi|299533374|ref|ZP_07046756.1| ATP-dependent DNA helicase RecQ [Comamonas testosteroni S44]
gi|298718580|gb|EFI59555.1| ATP-dependent DNA helicase RecQ [Comamonas testosteroni S44]
Length = 636
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 132/229 (57%), Gaps = 19/229 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL----LTGKVVV 217
S+L+ FG+ + Q+ +S + D LVL TG GKSLC+Q+PA+ L V +
Sbjct: 5 QSILQAVFGYEQFRGPQQAIVSHVINGGDALVLMPTGGGKSLCYQVPAIARQQLGHGVTI 64
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR---GMYSIIYVCPETV--I 272
V+SPLI+LMHDQ L + G++A +L S ++ ++ LR G +++Y PE +
Sbjct: 65 VVSPLIALMHDQVGALHEAGISAAYLNSTLSYDETQEVELRLQSGDITLLYAAPERLNTP 124
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
R + L L ++LFAIDE HCVS+WGHDFRP+YR LSVL + + ++P
Sbjct: 125 RFLGLLDDLHAQGKLSLFAIDEAHCVSQWGHDFRPEYRALSVLHQRYA---------EVP 175
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
+ALTATA R DI++ L + F+ +SF RPN+R+ + K S
Sbjct: 176 RIALTATADALTRADIIERLQLEAAQHFI-SSFDRPNIRYKIAEKKDVS 223
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 115/243 (47%), Gaps = 25/243 (10%)
Query: 489 SFERTDLLNKPAER-------LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ K AE+ L ++ E ++Y +RK +A+ L G+ A
Sbjct: 206 SFDRPNIRYKIAEKKDVSNQLLRFIEREHEGEAGVVYCQSRKRVEELAQTLVQNGINALP 265
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A LP+ + F + V+ ATIAFGMGI+K +VR + H P+++E YYQE G
Sbjct: 266 YHAGLPQEMRQNHQDRFLREEGVVMCATIAFGMGINKPDVRFVAHVDMPKNIEGYYQETG 325
Query: 602 RAGRDGHLADCVLYANLSSMPT---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG AD + LS + ++ +E+Q KQ R D + CR
Sbjct: 326 RAGRDGLPADAWMAYGLSDVVNQRRMIDESPAEEQFKQVMRGKLDALLGLAEATDCRRVR 385
Query: 659 LVEYFGEDFSHE--------------KCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNE 704
L+ YFGE + E C CD C++ PP + + + A L+ I +E
Sbjct: 386 LLAYFGEQYGQEPSLDGKPLQAVARTHCGNCDNCLE-PPALWDGTDAARKLLSTIFRVHE 444
Query: 705 QSN 707
S
Sbjct: 445 ASG 447
>gi|398920745|ref|ZP_10659470.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM49]
gi|398167486|gb|EJM55547.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM49]
Length = 708
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIRRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + + IALFAIDE HCVS+WGHDFRP+Y +L L E F D+P +A
Sbjct: 121 PRMLSFLQGLNIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I+ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVTRLHLQDAERF-LSSFDRPNIFYRI 209
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 108/204 (52%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +L G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLAERRSDA-GIVYCLSRKKVEEVAAFLSEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP + LR H + F + ++VAT+AFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NDLRAYHQKRFLNEEGLIMVATVAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GR GRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 317 GRGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED + C CD CVDG
Sbjct: 377 TLLAYFDEDMP-QPCGHCDNCVDG 399
>gi|323494185|ref|ZP_08099300.1| ATP-dependent DNA helicase RecQ [Vibrio brasiliensis LMG 20546]
gi|323311579|gb|EGA64728.1| ATP-dependent DNA helicase RecQ [Vibrio brasiliensis LMG 20546]
Length = 612
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/254 (37%), Positives = 144/254 (56%), Gaps = 20/254 (7%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
S+L+ FG+ S ++ Q+E + A +A D LV+ TG GKSLC+QIPAL+ + +VISP
Sbjct: 18 QSILEDVFGYQSFRDGQQEVIDAAVAGQDSLVIMPTGGGKSLCYQIPALVRSGLTLVISP 77
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPL 278
LISLM DQ +L +GV A + S P + V + G+ ++YV PE V L++
Sbjct: 78 LISLMKDQVDQLKANGVAAECINSTMPREELISVYNRMNSGVIKLVYVSPERV--LMRDF 135
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
E +++ A+DE HC+S+WGHDFRP+Y L L++ F +P+MALTA
Sbjct: 136 IERLEGLPLSMIAVDEAHCISQWGHDFRPEYASLGQLKQYFP---------HVPVMALTA 186
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASYKKD---FCQLI 393
TA R DI + L +++ + L SF RPN+R+++ KH S + +D C +I
Sbjct: 187 TADDATRSDITQRLQLTEPHAY-LGSFDRPNIRYTLVEKHKPISQVVRFLEDQRGNCGII 245
Query: 394 DIYTKKKKTGEKEK 407
++KK EK
Sbjct: 246 YCGSRKKVEMVTEK 259
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 12/225 (5%)
Query: 489 SFERTDLL------NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ +KP ++ E IIY +RK+ + + LC G++AA+Y
Sbjct: 211 SFDRPNIRYTLVEKHKPISQVVRFLEDQRGNCGIIYCGSRKKVEMVTEKLCNNGLRAASY 270
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L + V F + +++VVAT+AFGMGI+K NVR ++H+ P+++E+YYQE GR
Sbjct: 271 HAGLDADERAYVQDAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGR 330
Query: 603 AGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A+ ++ A++S + +L + E KQ + CR ++L
Sbjct: 331 AGRDGLPAEAMMLYDPADISWLRRML-DEKDEGPQKQVEAHKLNAMSAFAEAQTCRRQVL 389
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNE 704
+ YFGE + + C CD+C+D PP+ + E+A + + N+
Sbjct: 390 LNYFGE-YRDKPCGNCDICLD-PPKHFDATEQAQKALSCVYRVNQ 432
>gi|410261436|gb|JAA18684.1| Bloom syndrome, RecQ helicase-like [Pan troglodytes]
Length = 1417
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V VVISPL
Sbjct: 658 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLR 717
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE + RLI
Sbjct: 718 SLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLI 777
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 778 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 828
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 829 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 866
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 101/184 (54%), Gaps = 14/184 (7%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEV 565
P + G IIY +R+E ++A L G+ A AY+A L S V ++ +++ +V
Sbjct: 885 HHPYDSG--IIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQV 942
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL- 624
+ ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L
Sbjct: 943 ICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLK 1002
Query: 625 ---LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL----- 674
+ + T++ + L Y N + CR L+ YFGE+ F+ + C+
Sbjct: 1003 RLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVS 1062
Query: 675 CDVC 678
CD C
Sbjct: 1063 CDNC 1066
>gi|163787884|ref|ZP_02182330.1| putative ATP-dependent DNA helicase [Flavobacteriales bacterium
ALC-1]
gi|159876204|gb|EDP70262.1| putative ATP-dependent DNA helicase [Flavobacteriales bacterium
ALC-1]
Length = 733
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 132/226 (58%), Gaps = 21/226 (9%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
E+ ++ LKK+FG S+ K Q+E + +A ++ V+ TG GKSLC+Q+PAL+ +
Sbjct: 5 EIDLHDSLKKYFGFSAFKGLQEEVIKNVVAGNNTFVIMPTGGGKSLCYQLPALIKEGTAI 64
Query: 218 VISPLISLMHDQCSKL---SKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPE 269
V+SPLI+LM +Q + S H A L S NK E K ++ G+ ++YV PE
Sbjct: 65 VVSPLIALMKNQVDAIRAVSDHDGVAHVLNSSL--NKTEVKRVKDDIVNGITKLLYVAPE 122
Query: 270 TVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKF 329
++ + + + I+ A+DE HC+S+WGHDFRP+YR L + +K +
Sbjct: 123 SLTK--EEYVEFLRTVKISFMAVDEAHCISEWGHDFRPEYRNLKTI--------IKRIGD 172
Query: 330 DIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
DIP++ LTATAT +V+EDILKSL M F SF RPNL + V+
Sbjct: 173 DIPIVGLTATATPKVQEDILKSLGMPNAVTF-KASFNRPNLYYEVR 217
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 127/260 (48%), Gaps = 20/260 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK +A+ L GVKA Y+A L + F +VVVATIAFGMG
Sbjct: 240 IVYCLSRKRVEELAQVLQVNGVKAVPYHAGLDAKTRVKHQDMFLMEDTDVVVATIAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--LPSRRSEDQ 633
IDK +VR +IH+ P+S+E+YYQE GRAGRDG C+ Y + L S + +
Sbjct: 300 IDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDIEKLEKFMSGKPVAE 359
Query: 634 TKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDV--CVDGPPEMKNLKEE 691
+ + +L + + TS R K ++ YFGE+F++E + D+ V P + K+E
Sbjct: 360 QEIGHALLQEVVAFA-ETSVSRRKFILHYFGEEFNNETGEGGDMDDNVRNPKKQVEAKDE 418
Query: 692 ANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLAT---- 747
L++ + NE+ S D Q + + N +S + +Q +
Sbjct: 419 VKTLLETVEKTNEKYKSKD---------LVQVLVGKAN--ALISSHKTDTQPFFGIGKSK 467
Query: 748 DLLWWRGLARIMENKGYIRE 767
D +W L R + GY+++
Sbjct: 468 DARYWMALIRQVLVAGYLKK 487
>gi|53723860|ref|YP_104172.1| ATP-dependent DNA helicase RecQ [Burkholderia mallei ATCC 23344]
gi|67640295|ref|ZP_00439107.1| ATP-dependent DNA helicase RecQ [Burkholderia mallei GB8 horse 4]
gi|126441619|ref|YP_001060756.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 668]
gi|126448753|ref|YP_001082984.1| ATP-dependent DNA helicase RecQ [Burkholderia mallei NCTC 10247]
gi|126454768|ref|YP_001068040.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 1106a]
gi|134283152|ref|ZP_01769853.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 305]
gi|167003560|ref|ZP_02269346.1| ATP-dependent DNA helicase RecQ [Burkholderia mallei PRL-20]
gi|167721582|ref|ZP_02404818.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei DM98]
gi|167740556|ref|ZP_02413330.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 14]
gi|167817761|ref|ZP_02449441.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 91]
gi|167826158|ref|ZP_02457629.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 9]
gi|167847670|ref|ZP_02473178.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei B7210]
gi|167896242|ref|ZP_02483644.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 7894]
gi|167904624|ref|ZP_02491829.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei NCTC
13177]
gi|167912889|ref|ZP_02499980.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 112]
gi|167920849|ref|ZP_02507940.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei BCC215]
gi|217424831|ref|ZP_03456328.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 576]
gi|237814152|ref|YP_002898603.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei MSHR346]
gi|242318091|ref|ZP_04817107.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 1106b]
gi|254174750|ref|ZP_04881411.1| ATP-dependent DNA helicase RecQ [Burkholderia mallei ATCC 10399]
gi|254180335|ref|ZP_04886933.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 1655]
gi|254190298|ref|ZP_04896806.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei Pasteur
52237]
gi|254198524|ref|ZP_04904945.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei S13]
gi|254201243|ref|ZP_04907607.1| ATP-dependent DNA helicase RecQ [Burkholderia mallei FMH]
gi|254206584|ref|ZP_04912935.1| ATP-dependent DNA helicase RecQ [Burkholderia mallei JHU]
gi|254258378|ref|ZP_04949432.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 1710a]
gi|254300574|ref|ZP_04968019.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 406e]
gi|254357123|ref|ZP_04973397.1| ATP-dependent DNA helicase RecQ [Burkholderia mallei 2002721280]
gi|403520473|ref|YP_006654607.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei BPC006]
gi|418394508|ref|ZP_12968637.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 354a]
gi|418542174|ref|ZP_13107625.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 1258a]
gi|418548697|ref|ZP_13113803.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 1258b]
gi|418554635|ref|ZP_13119413.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 354e]
gi|52427283|gb|AAU47876.1| ATP-dependent DNA helicase RecQ [Burkholderia mallei ATCC 23344]
gi|126221112|gb|ABN84618.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 668]
gi|126228410|gb|ABN91950.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 1106a]
gi|126241623|gb|ABO04716.1| ATP-dependent DNA helicase RecQ [Burkholderia mallei NCTC 10247]
gi|134245347|gb|EBA45440.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 305]
gi|147747137|gb|EDK54213.1| ATP-dependent DNA helicase RecQ [Burkholderia mallei FMH]
gi|147752126|gb|EDK59192.1| ATP-dependent DNA helicase RecQ [Burkholderia mallei JHU]
gi|148026187|gb|EDK84272.1| ATP-dependent DNA helicase RecQ [Burkholderia mallei 2002721280]
gi|157810638|gb|EDO87808.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 406e]
gi|157937974|gb|EDO93644.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei Pasteur
52237]
gi|160695795|gb|EDP85765.1| ATP-dependent DNA helicase RecQ [Burkholderia mallei ATCC 10399]
gi|169655264|gb|EDS87957.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei S13]
gi|184210874|gb|EDU07917.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 1655]
gi|217392287|gb|EEC32312.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 576]
gi|237503436|gb|ACQ95754.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei MSHR346]
gi|238520989|gb|EEP84444.1| ATP-dependent DNA helicase RecQ [Burkholderia mallei GB8 horse 4]
gi|242141330|gb|EES27732.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 1106b]
gi|243060920|gb|EES43106.1| ATP-dependent DNA helicase RecQ [Burkholderia mallei PRL-20]
gi|254217067|gb|EET06451.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 1710a]
gi|385356253|gb|EIF62379.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 1258a]
gi|385357507|gb|EIF63562.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 1258b]
gi|385370015|gb|EIF75294.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 354e]
gi|385374909|gb|EIF79715.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 354a]
gi|403076115|gb|AFR17695.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei BPC006]
Length = 615
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 131/219 (59%), Gaps = 21/219 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV----VVI 219
+L + FG+ + + Q E + A DCLVL TG GKSLC+QIPAL+ + +V+
Sbjct: 7 ILNEVFGYPAFRGQQGEIVEHVAAGGDCLVLMPTGGGKSLCYQIPALVRSEAGRGAGIVV 66
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + LS+ GV A +L S + ++ALR G ++YV PE RL+
Sbjct: 67 SPLIALMQDQVAALSEVGVRAAYLNSTLSGAEAAATERALRDGDIDLLYVAPE---RLMT 123
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P L E I LFAIDE HCVS+WGHDFRP+Y +LSVL E F D+P +A
Sbjct: 124 PRFLDLLERARIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------DVPRIA 174
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA R++I++ L + FV +SF RPN+R+ +
Sbjct: 175 LTATADAITRDEIVQRLALDDARIFV-SSFDRPNIRYRI 212
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 11/195 (5%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVV 567
DG T ++Y +R++ A++L GV+A Y+A + + ++R+ H E F + V+
Sbjct: 234 DGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGM-EFEIRQKHQEMFQREEGVVMC 292
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 293 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPANAWMAYGLGDVVQQRKM 352
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D T+ CR L+ YFGE + C CD C++ PP
Sbjct: 353 IDESEADDTHKRVQTSKLDALLGLCETASCRRVRLLAYFGE--TSGPCGNCDTCLE-PPA 409
Query: 685 MKNLKEEANILMQVI 699
+ EA + + +
Sbjct: 410 TWDATREAQMALSCV 424
>gi|28198526|ref|NP_778840.1| ATP-dependent DNA helicase [Xylella fastidiosa Temecula1]
gi|28056610|gb|AAO28489.1| ATP-dependent DNA helicase [Xylella fastidiosa Temecula1]
Length = 600
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 128/225 (56%), Gaps = 15/225 (6%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
++L++ FG+ + + Q+ + A HD LVL TG GKSLC+Q+PALL + VVIS
Sbjct: 7 TQTVLQRVFGYDTFRGPQQAIIEHVAAGHDALVLMPTGGGKSLCYQVPALLRKGIGVVIS 66
Query: 221 PLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ L + GV A +L S ++E + ++Y+ PE + L
Sbjct: 67 PLIALMQDQVETLRQLGVRAAYLNSTLDATQAQRIEHALVTADLDLLYITPERL--LTAH 124
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + +P +ALT
Sbjct: 125 FLSLLERSQIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HVPRIALT 175
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
ATA + +I + L +S F+ +SF RPN+R++V R
Sbjct: 176 ATADPPTQREIAERLDLSDAHHFI-SSFDRPNIRYTVVQKNNMRR 219
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 10/200 (5%)
Query: 489 SFERTDLLNKPAERLSM---LQEPL---EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ ++ +M LQE L + I+Y +R++T IA YLC G A Y
Sbjct: 201 SFDRPNIRYTVVQKNNMRRQLQEFLSRHRNTAGIVYAMSRRKTEEIAAYLCTQGYNALPY 260
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A LP + F + V+ ATIAFGMGI+K +VR + H P+SLE YYQE GR
Sbjct: 261 HAGLPAETRAKHQRCFLREEGIVMCATIAFGMGINKPDVRFVAHIDLPKSLEGYYQETGR 320
Query: 603 AGRDGHLAD---CVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A+ C ++ + ++ + + K R D + CR ++L
Sbjct: 321 AGRDGEAAEAWMCYSLGDVVLLKQMIEQSEASEARKCVERAKLDHLLGYCESMQCRRQLL 380
Query: 660 VEYFGEDFSHEKCQLCDVCV 679
+ FGE + + C CD C+
Sbjct: 381 LSSFGETYPN-PCGNCDNCL 399
>gi|220935100|ref|YP_002513999.1| ATP-dependent DNA helicase RecQ [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219996410|gb|ACL73012.1| ATP-dependent DNA helicase RecQ [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 711
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 133/224 (59%), Gaps = 19/224 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG+ + Q E + +A ++ LVL TG GKSLC+QIP+L+ +V+SPLI
Sbjct: 7 VLRDTFGYPDFRPTQGEIVEHLVAGNEALVLMPTGGGKSLCYQIPSLVRSGTGIVVSPLI 66
Query: 224 SLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ L + GV A FL S + +VEQ L G ++YV PE ++ R++ L
Sbjct: 67 ALMQDQVDALRQVGVRAAFLNSSLDARTAREVEQALLAGELDLLYVAPERLMTERMMDLL 126
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
R SR +ALFAIDE HCVS+WGH+FRP+Y +LS L E F ++P +ALTA
Sbjct: 127 TR---SR-LALFAIDEAHCVSQWGHNFRPEYLKLSALHERFP---------EVPRVALTA 173
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
TA R++I + L +++ F+ + F RPN+R+ V +R
Sbjct: 174 TADAPTRKEIAERLGLTEARHFI-SGFDRPNIRYRVTQKHAGTR 216
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 99/179 (55%), Gaps = 7/179 (3%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVA 568
P E G I+Y +RK+ A++L G G+ A Y+A L + + + F + +VVA
Sbjct: 228 PGEAG--IVYCLSRKKVDDTAQWLEGKGLTALPYHAGLAQEVRQDHQSRFLREEGVIVVA 285
Query: 569 TIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---L 625
TIAFGMGIDK NVR + H P+SLEAYYQE GRAGRDG AD + L + L L
Sbjct: 286 TIAFGMGIDKPNVRFVAHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVIMLRQML 345
Query: 626 PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ +E+ K+ R + + CR + L+EYFGE E C CD C++ PPE
Sbjct: 346 EASEAEETHKRIERARLEAMLGYCELTTCRRQRLLEYFGERLP-EPCGNCDTCLE-PPE 402
>gi|124384480|ref|YP_001027889.1| ATP-dependent DNA helicase RecQ [Burkholderia mallei NCTC 10229]
gi|124292500|gb|ABN01769.1| ATP-dependent DNA helicase RecQ [Burkholderia mallei NCTC 10229]
Length = 658
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 131/219 (59%), Gaps = 21/219 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV----VVI 219
+L + FG+ + + Q E + A DCLVL TG GKSLC+QIPAL+ + +V+
Sbjct: 50 ILNEVFGYPAFRGQQGEIVEHVAAGGDCLVLMPTGGGKSLCYQIPALVRSEAGRGAGIVV 109
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + LS+ GV A +L S + ++ALR G ++YV PE RL+
Sbjct: 110 SPLIALMQDQVAALSEVGVRAAYLNSTLSGAEAAATERALRDGDIDLLYVAPE---RLMT 166
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P L E I LFAIDE HCVS+WGHDFRP+Y +LSVL E F D+P +A
Sbjct: 167 PRFLDLLERARIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------DVPRIA 217
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA R++I++ L + FV +SF RPN+R+ +
Sbjct: 218 LTATADAITRDEIVQRLALDDARIFV-SSFDRPNIRYRI 255
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 11/195 (5%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVV- 567
DG T ++Y +R++ A++L GV+A Y+A + + ++R+ H E + + VV+
Sbjct: 277 DGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGM-EFEIRQKHQEMFQREEGVVMC 335
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 336 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPANAWMAYGLGDVVQQRKM 395
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D T+ CR L+ YFGE + C CD C++ PP
Sbjct: 396 IDESEADDTHKRVQTSKLDALLGLCETASCRRVRLLAYFGE--TSGPCGNCDTCLE-PPA 452
Query: 685 MKNLKEEANILMQVI 699
+ EA + + +
Sbjct: 453 TWDATREAQMALSCV 467
>gi|359395140|ref|ZP_09188193.1| ATP-dependent DNA helicase recQ [Halomonas boliviensis LC1]
gi|357972387|gb|EHJ94832.1| ATP-dependent DNA helicase recQ [Halomonas boliviensis LC1]
Length = 605
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 133/231 (57%), Gaps = 15/231 (6%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
+D + +L++ FG+ + Q+ + +A D LVL TG GKSLC+QIPALL
Sbjct: 3 ADTHPEALKVLQEVFGYDRFRGPQQAIIEHVIAGGDALVLMPTGGGKSLCYQIPALLREG 62
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETV 271
+V+SPLI+LM DQ + L ++GV A +L S +VE + G ++YV PE +
Sbjct: 63 TAIVVSPLIALMQDQVAALKQNGVRADYLNSSLDYHEAVEVENRLRAGELDLLYVAPERL 122
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
LQ L E IALFAIDE HCVS+WGHDFRP+YR+LS L + F +
Sbjct: 123 A--TARLQMLLEQTQIALFAIDEAHCVSQWGHDFRPEYRQLSHLHQRFP---------QV 171
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
P +ALTATA + R DI++ L + + + + F RPN+R+ + ++ ++
Sbjct: 172 PRIALTATADVPTRGDIMEHLQLQEAALYN-SGFDRPNIRYHIAENQGKAK 221
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 96/185 (51%), Gaps = 5/185 (2%)
Query: 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562
L ++E + I+Y +R++ A +L G+ A Y+A LP Q + T F
Sbjct: 225 LQFIREHHDGEAGIVYCLSRRKVEETAAWLERQGLTALPYHAGLPAEQRQHHQTRFLRED 284
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622
V+VATIAFGMGIDK +VR + H P+S+EAYYQE GRAGRDG AD + L +
Sbjct: 285 GVVIVATIAFGMGIDKPDVRFVAHLNLPKSIEAYYQETGRAGRDGLPADAWMAYGLQDVI 344
Query: 623 TLLPSRR---SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
TL ++ + DQ K+ + D CR + L+ YFG D C CD C+
Sbjct: 345 TLRQMQQDSSAADQQKRIEQQKLDAMLGLCEIISCRRQALLHYFG-DHLDAPCGNCDNCL 403
Query: 680 DGPPE 684
PPE
Sbjct: 404 T-PPE 407
>gi|196228960|ref|ZP_03127826.1| ATP-dependent DNA helicase RecQ [Chthoniobacter flavus Ellin428]
gi|196227241|gb|EDY21745.1| ATP-dependent DNA helicase RecQ [Chthoniobacter flavus Ellin428]
Length = 610
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 17/216 (7%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
+ LK+ FG+ S + Q+E ++ LA D L TG GKSLCFQ+PALL + VV+SPL
Sbjct: 9 ATLKQTFGYDSFRPLQEEIITDALAGRDVFALLPTGGGKSLCFQLPALLRDGLTVVVSPL 68
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL---RGMYSIIYVCPETVIRLIKP-L 278
I+LM DQ L+ GV A FL S ++ + RG + ++Y PE RL+ P
Sbjct: 69 IALMKDQVDALTATGVPATFLNSTLDGDEARARFRGLHRGEFRLLYAAPE---RLMLPGF 125
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+ + AIDE HC+S+WGHDFRP+YR+L+ LRE D+P+MALTA
Sbjct: 126 VDNLRAWNVTQIAIDEAHCISEWGHDFRPEYRQLADLRETLP---------DVPMMALTA 176
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TAT +VR DI++ L + + + SF RPNL + V
Sbjct: 177 TATERVRADIIERLRL-RDPRCYTASFNRPNLTYRV 211
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 14/202 (6%)
Query: 489 SFERTDLLNKPAER-------LSMLQ-EPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAA 540
SF R +L + R L+ L+ P E G IIY +RK T S+A+ L + A
Sbjct: 201 SFNRPNLTYRVVPRAQPYDQVLAFLRSRPGESG--IIYCSSRKATESVAERLADDRISAK 258
Query: 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A L + R F +++ V+ ATIAFGMGI+K NVR ++HY P+++E YYQE
Sbjct: 259 PYHAGLTAEERGRHQELFLRDEVRVICATIAFGMGINKPNVRFVLHYDLPKNIEGYYQET 318
Query: 601 GRAGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG +CVL A++ + + + ++ + A L + +++C R +
Sbjct: 319 GRAGRDGLPGECVLLFSAADVVKQTSFIEEKTDPEERRIARAQLQQMVHFAESSACRRVE 378
Query: 658 ILVEYFGEDFSHEKCQLCDVCV 679
+L YFGE++ E C CD C+
Sbjct: 379 LL-GYFGEEWPDENCGGCDNCL 399
>gi|422015295|ref|ZP_16361894.1| ATP-dependent DNA helicase RecQ [Providencia burhodogranariea DSM
19968]
gi|414099460|gb|EKT61101.1| ATP-dependent DNA helicase RecQ [Providencia burhodogranariea DSM
19968]
Length = 608
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 130/217 (59%), Gaps = 19/217 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+L FG+ S + Q+ + A L + D LVL TG GKSLC+Q+PAL+ V +V+SPL
Sbjct: 15 SILNSTFGYQSFRPGQEAVIRAILDNRDSLVLMPTGGGKSLCYQVPALVKDGVTLVVSPL 74
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKP-- 277
ISLM DQ +L HG+ A L S Q +V +G ++YV PE RL+
Sbjct: 75 ISLMKDQVDQLRLHGINAACLNSSQTPQEQREVMDSCAQGNLKLLYVAPE---RLLTDYF 131
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L +LA + IAL A+DE HC+S+WGHDFRP+YR L LR++F D+P+MALT
Sbjct: 132 LSQLA-NWNIALLAVDEAHCISQWGHDFRPEYRALGQLRQHFP---------DVPVMALT 181
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ATA R DI++ L + V +SF RPN+R+++
Sbjct: 182 ATADETTRADIIRLLALDNPLVQV-SSFDRPNIRYTL 217
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 135/272 (49%), Gaps = 16/272 (5%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L + + I+Y +R + A+ L G+ AAY+A L Q V
Sbjct: 222 KPLEQLWFFIKAQKGKAGIVYCNSRNKVEETAERLQKRGLSVAAYHAGLDSQQREWVQDA 281
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F ++ L++VVAT+AFGMGI+K NVR + H+ P+++EAYYQE GRAGRDG A+ +L+ +
Sbjct: 282 FLKDNLQIVVATVAFGMGINKSNVRFVAHFDIPRNIEAYYQETGRAGRDGVEAEAILFYD 341
Query: 618 LSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMN-------TSCCRAKILVEYFGEDFSHE 670
+ M L RR ++ + D R+ +N CR +L+ YFGE+
Sbjct: 342 PADMAWL---RRCLEEKPAGVQ--QDIERHKLNAIAAFAEAQTCRRLVLLNYFGEN-RQT 395
Query: 671 KCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNL 730
C CD+C+D P + L + L + Q + G+ G Q+ D +
Sbjct: 396 PCGNCDICLDPPKQYDGLVDAQKALSCIYRV--GQRFGIGYIVGVLRGANNQRIRDLGHD 453
Query: 731 KMFVSKI-REQSQKYLATDLLWWRGLARIMEN 761
K+ V + +EQ+ ++ + L L I +N
Sbjct: 454 KLPVYGLGKEQTNEHWVSVLRQLIHLGMITQN 485
>gi|398897300|ref|ZP_10648073.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM55]
gi|398177080|gb|EJM64773.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM55]
Length = 708
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIRRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + + IALFAIDE HCVS+WGHDFRP+Y +L L E F D+P +A
Sbjct: 121 PRMLSFLQGLNIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I+ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVTRLHLQDAERF-LSSFDRPNIFYRI 209
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 108/204 (52%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +L G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLAERRSDA-GIVYCLSRKKVEEVAAFLSEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP + LR H + F + ++VAT+AFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NDLRAYHQKRFLNEEGLIMVATVAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GR GRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 317 GRGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED E C CD CVDG
Sbjct: 377 TLLAYFDEDMP-EPCGHCDNCVDG 399
>gi|386863477|ref|YP_006276426.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 1026b]
gi|418534626|ref|ZP_13100465.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 1026a]
gi|385358995|gb|EIF64975.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 1026a]
gi|385660605|gb|AFI68028.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei 1026b]
Length = 615
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 131/219 (59%), Gaps = 21/219 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV----VVI 219
+L + FG+ + + Q E + A DCLVL TG GKSLC+QIPAL+ + +V+
Sbjct: 7 ILNEVFGYPAFRGQQGEIVEHVAAGGDCLVLMPTGGGKSLCYQIPALVRSEAGRGAGIVV 66
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + LS+ GV A +L S + ++ALR G ++YV PE RL+
Sbjct: 67 SPLIALMQDQVAALSEVGVRAAYLNSTLSGAEAAATERALRDGDIDLLYVAPE---RLMT 123
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P L E I LFAIDE HCVS+WGHDFRP+Y +LSVL E F D+P +A
Sbjct: 124 PRFLDLLERARIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------DVPRIA 174
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA R++I++ L + FV +SF RPN+R+ +
Sbjct: 175 LTATADAITRDEIVQRLALDDARIFV-SSFDRPNIRYRI 212
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 11/195 (5%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVV 567
DG T ++Y +R++ A++L GV+A Y+A + + ++R+ H E F + V+
Sbjct: 234 DGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGM-EFEIRQKHQEMFQREEGVVMC 292
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 293 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPANAWMAYGLGDVVQQRKM 352
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D T+ CR L+ YFGE + C CD C++ PP
Sbjct: 353 IDESEADDTHKRVQTSKLDALLGLCETASCRRVRLLAYFGE--TSGPCGNCDTCLE-PPA 409
Query: 685 MKNLKEEANILMQVI 699
+ EA + + +
Sbjct: 410 TWDATREAQMALSCV 424
>gi|209965714|ref|YP_002298629.1| ATP-dependent DNA helicase RecQ [Rhodospirillum centenum SW]
gi|209959180|gb|ACI99816.1| ATP-dependent DNA helicase RecQ [Rhodospirillum centenum SW]
Length = 610
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 130/226 (57%), Gaps = 19/226 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
++L+ +G+ + Q + +A D LVL TG GKSLC+QIPAL+ V +V+SP
Sbjct: 14 RTVLRNVWGYPDFRGMQAAIVEQVIAGGDALVLMPTGGGKSLCYQIPALVRPGVGIVVSP 73
Query: 222 LISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKP- 277
LI+LM DQ L + GV A +L S + +VE+ RG ++YV PE RL+ P
Sbjct: 74 LIALMRDQVDALRQLGVRAAYLNSTLDWREALEVERACERGGLDLLYVAPE---RLVTPR 130
Query: 278 -LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L L SR IALFA+DE HCVS+WGHDFRP+Y + S+L E F D+P +AL
Sbjct: 131 FLDLLERSR-IALFALDEAHCVSQWGHDFRPEYLQCSILHERFP---------DVPRIAL 180
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
TATA Q R DI++ L + G + SF RPN+ + V+ R
Sbjct: 181 TATADAQTRADIVERLGLG-GAEVFAASFDRPNITYRVQTKDNERR 225
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 14/171 (8%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R + S+A++L G+ A Y+A L + F + + V+VAT+AFGMG
Sbjct: 241 IVYCMSRGKVESVAQWLREQGIDALPYHAGLEAETRQANQDRFIKAEGVVMVATVAFGMG 300
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--------LPS 627
IDK NVR ++H P+SLEAYYQE GRAGRDG A+ ++ + L P+
Sbjct: 301 IDKPNVRFVVHMDPPRSLEAYYQETGRAGRDGLPAEALMLYGFQDVVQLRQWVEASDAPA 360
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVC 678
R + ++ +L C T+ CR + ++ YFGE+ + + C CD C
Sbjct: 361 RHKRTERQKLEALLGFC-----ETARCRRQTILTYFGEE-APQPCGNCDTC 405
>gi|302789379|ref|XP_002976458.1| hypothetical protein SELMODRAFT_105080 [Selaginella moellendorffii]
gi|300156088|gb|EFJ22718.1| hypothetical protein SELMODRAFT_105080 [Selaginella moellendorffii]
Length = 711
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 155/268 (57%), Gaps = 23/268 (8%)
Query: 121 IVEEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKE 180
++EEQ E +DC +E D + + ++ +W+ + ++LL FG S+ + Q+E
Sbjct: 26 LLEEQAELRQLIDCCRASEEDDIQI-IEQDWSGNFEWDNEASNLLLNVFGISTYRRNQRE 84
Query: 181 ALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTA 240
++A +++ + +V+ A G GKSLC+Q+PALL + +V+SPL+SL+ DQ L+ GV+A
Sbjct: 85 IVNALMSNKNVVVVMAAGGGKSLCYQLPALLRPGIALVVSPLLSLIQDQVMGLAALGVSA 144
Query: 241 CFLGSGQPDNKVEQKALR-------GMYSIIYVCPETVI---RLIKPLQRLAESRGIALF 290
L S +K E+K + G I+YV PE + R + L++ + ++L
Sbjct: 145 AMLTS--TTSKEEEKEIYRVLEKGDGNLRILYVTPEKIAKSKRFMSKLEKCNRAGRLSLV 202
Query: 291 AIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILK 350
AIDE HC S+WGHDFRPDY+ L +L++ F +P++ALTATAT +V+ D+ +
Sbjct: 203 AIDEAHCCSQWGHDFRPDYKNLGILKKQFP---------KVPMIALTATATGRVQRDLQE 253
Query: 351 SLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
L + +F +S RPNL + V+ K
Sbjct: 254 MLQILPCERFT-SSVNRPNLFYEVRDKK 280
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 6/164 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RKE +A L + AA Y+A + VH + N+L+V+V T+AFGMG
Sbjct: 305 IVYCFSRKECEQVADALRKRQISAAHYHADMDSGLRTNVHRRWSSNQLQVIVGTVAFGMG 364
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K +VR +IH+ +SLE YYQE+GRAGRDG + CVL+ + +P SE+
Sbjct: 365 INKPDVRFVIHHTLSKSLETYYQESGRAGRDGLPSRCVLFFRPADVPRQSCMVFSENTGL 424
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ-LCDVC 678
Q ++ RY + CR +YF E ++C +CD C
Sbjct: 425 QNLYAMA---RYCQSKQRCRRAAFFQYFAEQV--QECNGMCDTC 463
>gi|423684806|ref|ZP_17659614.1| ATP-dependent DNA helicase RecQ [Vibrio fischeri SR5]
gi|371495853|gb|EHN71447.1| ATP-dependent DNA helicase RecQ [Vibrio fischeri SR5]
Length = 608
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 144/248 (58%), Gaps = 24/248 (9%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++LK FG+ + Q+E ++A L DCLV+ TG GKSLC+QIPAL+ + +VISPL
Sbjct: 15 TVLKDVFGYQEFRVGQEEVINAVLDGKDCLVIMPTGGGKSLCYQIPALVFEGLTLVISPL 74
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL-----RGMYSIIYVCPETVIRLIKP 277
ISLM DQ +L +GV A L S + EQ A+ G ++YV PE V +++
Sbjct: 75 ISLMKDQVDQLKANGVKAECLNST--IEREEQIAIWNRVNSGQVKMLYVSPERV--MMRD 130
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
ES + + A+DE HC+S+WGHDFRP+Y L +++ F + +P+MALT
Sbjct: 131 FMDRLESLNLCMIAVDEAHCISQWGHDFRPEYASLGQIKQRFPS---------VPIMALT 181
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---KKDFCQL 392
ATA R+DIL L + + ++ L SF RPN+R++V KH S Y +K+ C +
Sbjct: 182 ATADEATRKDILHRLSLPEPHQY-LGSFDRPNIRYTVLEKHKPVSQIVRYLATQKNQCGV 240
Query: 393 IDIYTKKK 400
I ++KK
Sbjct: 241 IYCGSRKK 248
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 152/301 (50%), Gaps = 37/301 (12%)
Query: 489 SFERTDLL------NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ +KP ++ ++ +IY +RK+ + + LC ++AA+Y
Sbjct: 207 SFDRPNIRYTVLEKHKPVSQIVRYLATQKNQCGVIYCGSRKKVEMLTEKLCNNHIRAASY 266
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L + V F + +++VVAT+AFGMGI+K NVR + H+ P+++E+YYQE GR
Sbjct: 267 HAGLDLDERNYVQEAFQRDDIQIVVATVAFGMGINKSNVRFVAHFDIPKNIESYYQETGR 326
Query: 603 AGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTS-----CCRAK 657
AGRDG A+ V+ + + + L R+ ++ + + L + + T+ CR +
Sbjct: 327 AGRDGLPAEAVMLYDPADIVWL---RKLVEEKPEGPQKLVESHKLNAMTAFAEAQTCRRQ 383
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYS 717
+L+ YFGE +S + C CDVC+D PP+ + E A + + N QS + +
Sbjct: 384 VLLNYFGE-YSAKPCGNCDVCLD-PPKQFDGTEAAQKALSCVYRVN-QSFGVGYVVEVLR 440
Query: 718 GIKKQKFMDRPNLKMFVSKIREQSQKYLATDLL-------WWRGLARIMENKGYIREGDD 770
G+K +++IRE L+T + +W + R + +KG + +
Sbjct: 441 GLK-------------IARIREHGHDKLSTYGIGKEHTHEYWVSIIRQLIHKGLLVQNIT 487
Query: 771 R 771
R
Sbjct: 488 R 488
>gi|398925314|ref|ZP_10661808.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM48]
gi|398172221|gb|EJM60095.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM48]
Length = 708
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIRRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + + IALFAIDE HCVS+WGHDFRP+Y +L L E F D+P +A
Sbjct: 121 PRMLSFLQGLNIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I+ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVTRLHLQDAERF-LSSFDRPNIFYRI 209
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 108/204 (52%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +L G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLAERRSDA-GIVYCLSRKKVEEVAAFLSAQGFPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP + LR H + F + ++VAT+AFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NDLRAYHQKRFLNEEGLIMVATVAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GR GRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 317 GRGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED E C CD CVDG
Sbjct: 377 TLLAYFDEDMP-EPCGHCDNCVDG 399
>gi|397472473|ref|XP_003807768.1| PREDICTED: Bloom syndrome protein isoform 1 [Pan paniscus]
gi|397472475|ref|XP_003807769.1| PREDICTED: Bloom syndrome protein isoform 2 [Pan paniscus]
Length = 1417
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V VVISPL
Sbjct: 658 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLR 717
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE + RLI
Sbjct: 718 SLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLI 777
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 778 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 828
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 829 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 866
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 101/184 (54%), Gaps = 14/184 (7%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEV 565
P + G IIY +R+E ++A L G+ A AY+A L S V ++ +++ +V
Sbjct: 885 HHPYDSG--IIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQV 942
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL- 624
+ ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L
Sbjct: 943 ICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLK 1002
Query: 625 ---LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL----- 674
+ + T++ + L Y N + CR L+ YFGE+ F+ + C+
Sbjct: 1003 RLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVS 1062
Query: 675 CDVC 678
CD C
Sbjct: 1063 CDNC 1066
>gi|121600768|ref|YP_994462.1| ATP-dependent DNA helicase RecQ [Burkholderia mallei SAVP1]
gi|121229578|gb|ABM52096.1| ATP-dependent DNA helicase RecQ [Burkholderia mallei SAVP1]
Length = 763
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 131/219 (59%), Gaps = 21/219 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV----VVI 219
+L + FG+ + + Q E + A DCLVL TG GKSLC+QIPAL+ + +V+
Sbjct: 155 ILNEVFGYPAFRGQQGEIVEHVAAGGDCLVLMPTGGGKSLCYQIPALVRSEAGRGAGIVV 214
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + LS+ GV A +L S + ++ALR G ++YV PE RL+
Sbjct: 215 SPLIALMQDQVAALSEVGVRAAYLNSTLSGAEAAATERALRDGDIDLLYVAPE---RLMT 271
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P L E I LFAIDE HCVS+WGHDFRP+Y +LSVL E F D+P +A
Sbjct: 272 PRFLDLLERARIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------DVPRIA 322
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA R++I++ L + FV +SF RPN+R+ +
Sbjct: 323 LTATADAITRDEIVQRLALDDARIFV-SSFDRPNIRYRI 360
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 11/195 (5%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVV 567
DG T ++Y +R++ A++L GV+A Y+A + + ++R+ H E F + V+
Sbjct: 382 DGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGM-EFEIRQKHQEMFQREEGVVMC 440
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 441 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPANAWMAYGLGDVVQQRKM 500
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D T+ CR L+ YFGE + C CD C++ PP
Sbjct: 501 IDESEADDTHKRVQTSKLDALLGLCETASCRRVRLLAYFGE--TSGPCGNCDTCLE-PPA 557
Query: 685 MKNLKEEANILMQVI 699
+ EA + + +
Sbjct: 558 TWDATREAQMALSCV 572
>gi|375267036|ref|YP_005024479.1| ATP-dependent DNA helicase RecQ [Vibrio sp. EJY3]
gi|369842356|gb|AEX23500.1| ATP-dependent DNA helicase RecQ [Vibrio sp. EJY3]
Length = 611
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 100/261 (38%), Positives = 143/261 (54%), Gaps = 20/261 (7%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
SD V +L+ FG+ ++ Q+E + A + D LV+ TG GKSLC+QIPAL+
Sbjct: 10 SDSPVTPQRVLEDVFGYQKFRDGQQEVIDAAIDGQDSLVIMPTGGGKSLCYQIPALVRNG 69
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETV 271
+ +VISPLISLM DQ +L +GV A + S + V + G +IYV PE V
Sbjct: 70 ITLVISPLISLMKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHNGQLKLIYVSPERV 129
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
L++ ES +A+ A+DE HC+S+WGHDFRP+Y L L+++F +
Sbjct: 130 --LMRDFIERLESLPLAMIAVDEAHCISQWGHDFRPEYASLGQLKQHFS---------HV 178
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---K 386
P MALTATA R DIL+ L ++ + L SF RPN+R+++ KH S Y +
Sbjct: 179 PFMALTATADDATRRDILERLRLNDPQVY-LGSFDRPNIRYNLVEKHKPVSQIIRYLETQ 237
Query: 387 KDFCQLIDIYTKKKKTGEKEK 407
K C +I ++KK EK
Sbjct: 238 KGNCGIIYCGSRKKVEMVTEK 258
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 156/314 (49%), Gaps = 28/314 (8%)
Query: 458 EFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLL--NKPAERLSMLQEPLEDGLT 515
+ LE ++D V G F DR R +L+ +KP ++ E +
Sbjct: 194 DILERLRLNDPQVYLGSF-----------DRPNIRYNLVEKHKPVSQIIRYLETQKGNCG 242
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ + + LC ++AA Y+A + + V F + +++VVAT+AFGMG
Sbjct: 243 IIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDTDERAYVQEAFQRDDIQIVVATVAFGMG 302
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ ++ A++S + +L +
Sbjct: 303 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLFDPADISWLRRMLDEKDDGP 362
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
Q + L+ + CR ++L+ YFGE + + C CD+C+D PP+ + EEA
Sbjct: 363 QKQVESHKLNAMSAFA-EAQTCRRQVLLNYFGE-YREKPCGNCDICLD-PPKHFDATEEA 419
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLW 751
+ + N QS M + G++ + + + K+ I R+ S Y
Sbjct: 420 RKALSCVYRVN-QSFGMGYVVEVLRGMQNIRVRENGHDKISTYGIGRDHSHDY------- 471
Query: 752 WRGLARIMENKGYI 765
W + R + +KG +
Sbjct: 472 WVSIFRQLIHKGLL 485
>gi|381153488|ref|ZP_09865357.1| ATP-dependent DNA helicase RecQ [Methylomicrobium album BG8]
gi|380885460|gb|EIC31337.1| ATP-dependent DNA helicase RecQ [Methylomicrobium album BG8]
Length = 707
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 130/224 (58%), Gaps = 19/224 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK FG+ + Q + + A D LVL TG GKSLC+QIPALL V +VISPLI
Sbjct: 8 ILKSVFGYDRFREPQADVIGHLAAGGDALVLMPTGGGKSLCYQIPALLRDGVGIVISPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPE--TVIRLIKPL 278
+LM DQ S L++ G+ A FL S + ++EQ+ + G ++Y+ PE T R +
Sbjct: 68 ALMQDQVSALTQLGIRAAFLNSTLSLDDVRRIEQQLVGGKLDLLYIAPERLTAERTLSLF 127
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
R+ IALFAIDE HCVS+WGHDFR DY +LS+L E F A IP +ALTA
Sbjct: 128 SRIK----IALFAIDEAHCVSQWGHDFRADYLQLSLLHERFPA---------IPRIALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
TA + RE+I L +++ F F RPN+R+ + + + +
Sbjct: 175 TADPKTREEIRHRLGLAEARLFQ-RGFDRPNIRYRIVQKQNARK 217
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 85/170 (50%), Gaps = 8/170 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+ A +L G KA Y+A + + F + +VVATIAFGMG
Sbjct: 233 IVYCLSRKKVEETAVWLAAQGFKALPYHAGMAAPARQHNQHRFLMEEGLIVVATIAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR + H P+S+EAYYQE GRAGRDG AD + L + L R D
Sbjct: 293 IDKPNVRFVAHLDLPKSVEAYYQETGRAGRDGLPADAWMAYGLQDVIML--RRMLADSPA 350
Query: 636 QAYRMLSDCFRY-GMNTSC----CRAKILVEYFGEDFSHEKCQLCDVCVD 680
A R + + M C CR + L+ YFG+ C CD C++
Sbjct: 351 DAARKRLELHKLDAMLALCEQVHCRRQALLAYFGDQLDR-PCGNCDTCLE 399
>gi|312869285|ref|ZP_07729452.1| ATP-dependent DNA helicase RecQ [Lactobacillus oris PB013-T2-3]
gi|311095159|gb|EFQ53436.1| ATP-dependent DNA helicase RecQ [Lactobacillus oris PB013-T2-3]
Length = 597
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 131/223 (58%), Gaps = 16/223 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK +FG + ++ QKE +S + + L + TG GKSLC+QIPAL+ V +V+SPLI
Sbjct: 7 VLKDNFGFKTFRSGQKEVISRVINGENVLAVMPTGGGKSLCYQIPALVKPGVTLVVSPLI 66
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRL-IKPLQ 279
SLM DQ L ++G+ A + S P N + ++A G +IYV PE RL ++ +
Sbjct: 67 SLMKDQVDALRQNGIAAAAINSTIPQEEVNPILRQAYEGQVKLIYVTPE---RLNMEYFR 123
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ L AIDE HC+S+WGHDFRP YR+L + LK ++ALTAT
Sbjct: 124 YQLNFLPVDLVAIDEAHCISQWGHDFRPAYRQLK--------EAIDQLKSRPNILALTAT 175
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
AT V+EDI + L + K F++TSF RPN+ F V H + S+R
Sbjct: 176 ATPAVQEDIGQQLAIEK-DNFIITSFARPNISFRVVHPEKSTR 217
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 98/193 (50%), Gaps = 11/193 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIYV TR+ + YL A Y+A + + RV +F +++ +VAT AFGMG
Sbjct: 233 IIYVNTRRGVDELTTYLLEHHFAVAGYHAGMDAATRARVQDDFQFDRVSTIVATSAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT----LLPSRRSE 631
IDK NVR +IH Q++E+YYQEAGRAGRDG ++ VL + + + + S +
Sbjct: 293 IDKSNVRFVIHATAAQNIESYYQEAGRAGRDGLPSEAVLIYHPNDLRQYRWFIDQSTADD 352
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEE 691
D Y+ L Y +T C + +V YFG+D C C C D +N+++
Sbjct: 353 DYRDLQYQKLQAVANYA-STPECLQQYIVRYFGQDCP--PCGHCSNCTD----QRNVQDI 405
Query: 692 ANILMQVIAAYNE 704
QV+A E
Sbjct: 406 TAESKQVLAMVQE 418
>gi|441500281|ref|ZP_20982448.1| ATP-dependent DNA helicase RecQ [Fulvivirga imtechensis AK7]
gi|441435974|gb|ELR69351.1| ATP-dependent DNA helicase RecQ [Fulvivirga imtechensis AK7]
Length = 723
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 150/281 (53%), Gaps = 36/281 (12%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LKKHFG+ S ++ QKE + L D LVL TG GKSLC+Q+PAL+ V +VISPLI
Sbjct: 12 ILKKHFGYDSFRHQQKEIIHHILEGRDALVLMPTGGGKSLCYQVPALIFEGVTIVISPLI 71
Query: 224 SLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVIRLIKP-LQ 279
+LM DQ L +G++A +L S Q + + LR ++Y+ PE ++ K +
Sbjct: 72 ALMKDQVDALRLNGISAAYLNSSLSQQEQAEVMRLLRDNRLKLLYLAPERLVSGDKGFIN 131
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L + +++ AIDE HC+S+WGHDFRP+Y +L+ L+ F ++P++ALTAT
Sbjct: 132 FLKDQAKLSMIAIDEAHCISQWGHDFRPEYTQLATLKSVFP---------EVPVVALTAT 182
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKK 399
A ++DIL+ L + KFV +SF R N+ + V + R SY QL+ K
Sbjct: 183 ADKLTQDDILQQLKLHNPKKFV-SSFNRENIYYFV----SPKRRSYD----QLLQFLNKH 233
Query: 400 KKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGY 440
K DD + S S ES I DGY
Sbjct: 234 K--------------DDTGIIYTLSRASAESLAEQLIADGY 260
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 99/172 (57%), Gaps = 5/172 (2%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+D IIY +R S+A+ L G A Y+A L + + F +++++++ ATI
Sbjct: 234 KDDTGIIYTLSRASAESLAEQLIADGYDARPYHAGLDRDVRDKHQDLFIKDQIKIITATI 293
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPS 627
AFGMGIDK NVR ++H P+++E YYQE GRAGRDG ++ +L YA++ + + +
Sbjct: 294 AFGMGIDKSNVRFVVHMDLPKNIEGYYQETGRAGRDGLKSEALLFYSYADVKKLKSFVEV 353
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ Q++ + L++ YG CR K L+ YF E+ + E C CDVC+
Sbjct: 354 EGNTQQSEIMLKKLNEMAEYG-ELRTCRRKYLLNYFDEEAADE-CGSCDVCL 403
>gi|53720827|ref|YP_109813.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei K96243]
gi|52211241|emb|CAH37230.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei K96243]
Length = 644
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 131/219 (59%), Gaps = 21/219 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV----VVI 219
+L + FG+ + + Q E + A DCLVL TG GKSLC+QIPAL+ + +V+
Sbjct: 36 ILNEVFGYPAFRGQQGEIVEHVAAGGDCLVLMPTGGGKSLCYQIPALVRSEAGRGAGIVV 95
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + LS+ GV A +L S + ++ALR G ++YV PE RL+
Sbjct: 96 SPLIALMQDQVAALSEVGVRAAYLNSTLSGAEAAATERALRDGDIDLLYVAPE---RLMT 152
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P L E I LFAIDE HCVS+WGHDFRP+Y +LSVL E F D+P +A
Sbjct: 153 PRFLDLLERARIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------DVPRIA 203
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA R++I++ L + FV +SF RPN+R+ +
Sbjct: 204 LTATADAITRDEIVQRLALDDARIFV-SSFDRPNIRYRI 241
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 11/195 (5%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVV- 567
DG T ++Y +R++ A++L GV+A Y+A + + ++R+ H E + + VV+
Sbjct: 263 DGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGM-EFEIRQKHQEMFQREEGVVMC 321
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 322 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPANAWMAYGLGDVVQQRKM 381
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D T+ CR L+ YFGE + C CD C++ PP
Sbjct: 382 IDESEADDTHKRVQTSKLDALLGLCETASCRRVRLLAYFGE--TSGPCGNCDTCLE-PPA 438
Query: 685 MKNLKEEANILMQVI 699
+ EA + + +
Sbjct: 439 TWDATREAQMALSCV 453
>gi|110225360|ref|NP_001035992.1| Bloom syndrome protein homolog isoform 2 [Mus musculus]
gi|5921178|sp|O88700.1|BLM_MOUSE RecName: Full=Bloom syndrome protein homolog; Short=mBLM; AltName:
Full=RecQ helicase homolog
gi|3452495|emb|CAB10933.1| BLM protein [Mus musculus]
gi|162318414|gb|AAI57096.1| Bloom syndrome homolog (human) [synthetic construct]
Length = 1416
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 666 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 725
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 726 SLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLI 785
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 786 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 836
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 837 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 874
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 103/184 (55%), Gaps = 14/184 (7%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEV 565
P + G IIY +R+E ++A L G+ A AY+A L S V H +++ +V
Sbjct: 893 HHPYDSG--IIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQV 950
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMP 622
+ ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ CVL Y +++ +
Sbjct: 951 ICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLK 1010
Query: 623 TLLPSRRSED-QTKQAY-RMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL----- 674
L+ + + TK+ + L Y N + CR L+ YFGE F+ + C+
Sbjct: 1011 RLIMMEKDGNYHTKETHVNNLYSMVHYCENITECRRIQLLAYFGEKGFNPDFCKKYPDVS 1070
Query: 675 CDVC 678
CD C
Sbjct: 1071 CDNC 1074
>gi|148675036|gb|EDL06983.1| Bloom syndrome homolog (human), isoform CRA_b [Mus musculus]
Length = 1417
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 667 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 726
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 727 SLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLI 786
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 787 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 837
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 838 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 875
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 103/184 (55%), Gaps = 14/184 (7%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEV 565
P + G IIY +R+E ++A L G+ A AY+A L S V H +++ +V
Sbjct: 894 HHPYDSG--IIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQV 951
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMP 622
+ ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ CVL Y +++ +
Sbjct: 952 ICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLK 1011
Query: 623 TLLPSRRSED-QTKQAY-RMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL----- 674
L+ + + TK+ + L Y N + CR L+ YFGE F+ + C+
Sbjct: 1012 RLIMMEKDGNYHTKETHVNNLYSMVHYCENITECRRIQLLAYFGEKGFNPDFCKKYPDVS 1071
Query: 675 CDVC 678
CD C
Sbjct: 1072 CDNC 1075
>gi|114658901|ref|XP_510594.2| PREDICTED: Bloom syndrome protein isoform 2 [Pan troglodytes]
gi|332844655|ref|XP_003314898.1| PREDICTED: Bloom syndrome protein isoform 1 [Pan troglodytes]
Length = 1417
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V VVISPL
Sbjct: 658 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLR 717
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE + RLI
Sbjct: 718 SLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLI 777
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 778 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 828
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 829 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 866
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 101/184 (54%), Gaps = 14/184 (7%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEV 565
P + G IIY +R+E ++A L G+ A AY+A L S V ++ +++ +V
Sbjct: 885 HHPYDSG--IIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQV 942
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL- 624
+ ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L
Sbjct: 943 ICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLK 1002
Query: 625 ---LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL----- 674
+ + T++ + L Y N + CR L+ YFGE+ F+ + C+
Sbjct: 1003 RLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVS 1062
Query: 675 CDVC 678
CD C
Sbjct: 1063 CDNC 1066
>gi|392381147|ref|YP_005030344.1| ATP-dependent DNA helicase [Azospirillum brasilense Sp245]
gi|356876112|emb|CCC96865.1| ATP-dependent DNA helicase [Azospirillum brasilense Sp245]
Length = 642
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 130/220 (59%), Gaps = 17/220 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+S+ + Q + ++ + D LVL TG GKSLC+Q+PAL+ V VV+SPLI
Sbjct: 26 VLASVFGYSAFRGQQADIIAHVIRGGDALVLMPTGGGKSLCYQVPALVRDGVTVVVSPLI 85
Query: 224 SLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP-LQ 279
+LM DQ + L + GV A FL S +VE+ +RG ++YV PE RL+ P
Sbjct: 86 ALMRDQVTALRELGVRAAFLNSSLDAAEAREVERAMVRGEIDLVYVAPE---RLVTPRFL 142
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L + +ALFA+DE HCVS+WGHDFRP+Y +LS+L E +P +ALTAT
Sbjct: 143 DLLDRTKLALFALDEAHCVSQWGHDFRPEYLQLSILHERHPT---------VPRVALTAT 193
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT 379
A Q R +I L +++ F L+SF RPN+ + V K+
Sbjct: 194 ADAQTRAEIKDKLGLTEARVF-LSSFDRPNITYRVVPKKS 232
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 112/203 (55%), Gaps = 13/203 (6%)
Query: 489 SFERTDL----LNKPAER---LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + K +ER L+ L+E + IIY +R + A +L G +A
Sbjct: 217 SFDRPNITYRVVPKKSERQQMLAFLRENHPEDAGIIYCMSRAKVEDTANWLNQQGREALP 276
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP S++R + + F + + V+VAT+AFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 277 YHAGLP-SEVREANQDLFIKGEGIVMVATVAFGMGIDKPNVRFVCHLDPPKSLEAYYQET 335
Query: 601 GRAGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD + A++ + +L + D ++ R + TS CR K
Sbjct: 336 GRAGRDGLPADAWMSYGMADVVGLRQMLEQSEAGDSHRRVERSKLEALLGFCETSACRRK 395
Query: 658 ILVEYFGEDFSHEKCQLCDVCVD 680
+L+ YFGE C CD C++
Sbjct: 396 VLLNYFGETL-EAPCGNCDTCLE 417
>gi|91091128|ref|XP_969655.1| PREDICTED: similar to werner syndrome helicase [Tribolium
castaneum]
gi|270013136|gb|EFA09584.1| hypothetical protein TcasGA2_TC011701 [Tribolium castaneum]
Length = 874
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 125/214 (58%), Gaps = 13/214 (6%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L K FGH + + Q E + A + D + +TG GKSLCFQ P+ V +V+SPLI
Sbjct: 37 VLTKFFGHKTFRPKQWEIIFAIMDKRDVCAIMSTGYGKSLCFQYPSTFLKGVTLVVSPLI 96
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDN-KVEQKALRGMYSIIYVCPETVI--RLIKPLQR 280
+LM DQ L+ + AC LGS Q + KV + L+ YSI+Y+ PE ++ L++
Sbjct: 97 ALMQDQVLALTVSNIPACLLGSAQNEQRKVIEDILQNKYSIVYITPEFCSGDLGLELLKK 156
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
+A+ I L AIDE HC+S WGHDFR YR L LR+ F +P++A+TATA
Sbjct: 157 MAQQLKIVLIAIDEAHCISSWGHDFRSQYRNLGNLRQIFPR---------VPVIAVTATA 207
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
T +VR DI+KSL + + V + F RPNL F V
Sbjct: 208 TTRVRGDIVKSLQL-RDPLIVCSGFDRPNLYFEV 240
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 98/170 (57%), Gaps = 10/170 (5%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G TIIY TR++T + + L GV+ Y+A L + + + H EF +K++V+VATIAF
Sbjct: 267 GPTIIYCITRRQTEDLCEILKNCGVRCRVYHAGLSQKERQEAHEEFVRDKVDVIVATIAF 326
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSED 632
GMGIDK ++R +IHYG S+E+YYQE GRAGRDG A CV + L
Sbjct: 327 GMGIDKPDIRNVIHYGSSNSVESYYQEVGRAGRDGLPARCVTIYSSGDFQILRNISGGSV 386
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYF----GEDFSHEKCQLCDVC 678
+ + A R + D + T CR + ++E+F GED ++C CDVC
Sbjct: 387 KKETALRQIEDY----LTTRKCRRRFILEFFEDEVGEDKPKQRC--CDVC 430
>gi|3370996|dbj|BAA32001.1| mBlm [Mus musculus]
Length = 1416
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 666 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 725
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 726 SLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLI 785
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 786 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 836
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 837 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 874
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 103/184 (55%), Gaps = 14/184 (7%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEV 565
P + G IIY +R+E ++A L G+ A AY+A L S V H +++ +V
Sbjct: 893 HHPYDSG--IIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQV 950
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMP 622
+ ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ CVL Y +++ +
Sbjct: 951 ICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLK 1010
Query: 623 TLLPSRRSED-QTKQAY-RMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL----- 674
L+ + + TK+ + L Y N + CR L+ YFGE F+ + C+
Sbjct: 1011 RLIMMEKDGNYHTKETHVNNLYSMVHYCENITECRRIQLLAYFGEKGFNPDFCKKYPDVS 1070
Query: 675 CDVC 678
CD C
Sbjct: 1071 CDNC 1074
>gi|410346341|gb|JAA40688.1| Bloom syndrome, RecQ helicase-like [Pan troglodytes]
Length = 1417
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V VVISPL
Sbjct: 658 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLR 717
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE + RLI
Sbjct: 718 SLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLI 777
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 778 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 828
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 829 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 866
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 101/184 (54%), Gaps = 14/184 (7%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEV 565
P + G IIY +R+E ++A L G+ A AY+A L S V ++ +++ +V
Sbjct: 885 HHPYDSG--IIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQV 942
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL- 624
+ ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L
Sbjct: 943 ICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLK 1002
Query: 625 ---LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL----- 674
+ + T++ + L Y N + CR L+ YFGE+ F+ + C+
Sbjct: 1003 RLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVS 1062
Query: 675 CDVC 678
CD C
Sbjct: 1063 CDNC 1066
>gi|71274831|ref|ZP_00651119.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Xylella fastidiosa Dixon]
gi|71164563|gb|EAO14277.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Xylella fastidiosa Dixon]
gi|71730384|gb|EAO32466.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Xylella fastidiosa Ann-1]
Length = 645
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 15/217 (6%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
++L++ FG+ + + Q+ + A HD LVL TG GKSLC+Q+PALL + VVIS
Sbjct: 52 TQTVLQRVFGYDTFRGPQQAIIEHVAAGHDALVLMPTGGGKSLCYQVPALLRKGIGVVIS 111
Query: 221 PLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ L + GV A +L S ++E + ++Y+ PE + L
Sbjct: 112 PLIALMQDQVETLRQLGVRAAYLNSTLDATQAQRIEHALVTADLDLLYIAPERL--LTAH 169
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + +P +ALT
Sbjct: 170 FLSLLERSQIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HVPRIALT 220
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ATA + +I + L +S F+ +SF RPN+R++V
Sbjct: 221 ATADPPTQREIAERLDLSDAHHFI-SSFDRPNIRYTV 256
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 10/200 (5%)
Query: 489 SFERTDLLNKPAERLSM---LQEPL---EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ ++ +M LQE L + I+Y +R++T IA YLC G A Y
Sbjct: 246 SFDRPNIRYTVVQKNNMRRQLQEFLSRHRNTAGIVYAMSRRKTEEIAAYLCTQGYNALPY 305
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A LP + F + V+ ATIAFGMGI+K +VR + H P+SLE YYQE GR
Sbjct: 306 HAGLPAETRAKHQRCFLREEGIVMCATIAFGMGINKPDVRFVAHIDLPKSLEGYYQETGR 365
Query: 603 AGRDGHLAD---CVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A+ C ++ + ++ + + K R D + CR ++L
Sbjct: 366 AGRDGEAAEAWMCYSLGDVVLLKQMIEQSEASEARKCVERAKLDHLLGYCESMQCRRQLL 425
Query: 660 VEYFGEDFSHEKCQLCDVCV 679
+ FGE + + C CD C+
Sbjct: 426 LSSFGETYPN-PCGNCDNCL 444
>gi|390941990|ref|YP_006405751.1| ATP-dependent DNA helicase RecQ [Belliella baltica DSM 15883]
gi|390415418|gb|AFL82996.1| ATP-dependent DNA helicase RecQ [Belliella baltica DSM 15883]
Length = 711
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 141/243 (58%), Gaps = 18/243 (7%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
VK +LK+ FG+S + QK+ + + L+ D +VL TG GKS+C+Q+PA++ + +V
Sbjct: 8 VKSEGILKEFFGYSEFRGNQKQIIQSVLSKKDTIVLMPTGGGKSVCYQVPAMIFDGLTLV 67
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLI 275
ISPLISLM DQ L+ +G+ A FL S Q ++ + + G ++Y+ PE + R
Sbjct: 68 ISPLISLMKDQVDALNANGIPAAFLNSSQSQSEQRFISSQIQSGKIKLLYIAPERLYRGD 127
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
PL ++ ++L AIDE HCVS+WGHDFRP+Y ++ LR++F IP +A
Sbjct: 128 YPLIDFLKTVNLSLVAIDEAHCVSQWGHDFRPEYLKIGELRKSFP---------QIPFIA 178
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDI 395
LTATA R+DI L + K ++ ++SF R N+ + V T+ R + K + +D
Sbjct: 179 LTATADKLTRKDIADKLGL-KTPQWFISSFDRSNITYRV----TAKRDAMGK-LLEFLDF 232
Query: 396 YTK 398
+ K
Sbjct: 233 HKK 235
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 115/223 (51%), Gaps = 17/223 (7%)
Query: 463 DSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTR 522
D D + +++ S R T R + D + K E L ++ + G +IY +R
Sbjct: 190 DIADKLGLKTPQWFISSFDRSNITYRVTAKRDAMGKLLEFLDFHKK--DSG--VIYCLSR 245
Query: 523 KETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVR 582
K A L G+ A Y+A LP+ + + F +++++++VATIAFGMGIDK NVR
Sbjct: 246 KNVEETASELQARGLSALPYHAGLPREEREKNQELFIKDEVKIMVATIAFGMGIDKSNVR 305
Query: 583 RIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAY---- 638
++H PQ++E YYQE GRAGRDG +D +L+ + TL D + A+
Sbjct: 306 FVVHMNMPQNVEGYYQETGRAGRDGLPSDALLFYSGQDANTLGRMLDRGDNQEFAHVMQE 365
Query: 639 ---RMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVC 678
+M S C T CR K L+ YFGED + + C CD+C
Sbjct: 366 KLEKMKSFC-----QTKICRRKFLLNYFGEDHTGD-CGNCDIC 402
>gi|240949474|ref|ZP_04753814.1| ATP-dependent DNA helicase RecQ [Actinobacillus minor NM305]
gi|240296047|gb|EER46708.1| ATP-dependent DNA helicase RecQ [Actinobacillus minor NM305]
Length = 604
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 125/216 (57%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++L FG+ + Q+E + A L D LV+ TG GKSLC+Q+PAL + +VISPL
Sbjct: 9 AILNNIFGYQQFRQGQQEVIEAVLNGLDTLVIMTTGGGKSLCYQVPALCIEGLTLVISPL 68
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A ++ S Q VEQKA+ G ++Y+ PE V + +
Sbjct: 69 ISLMKDQVDQLLTNGIEAGYINSTQTFEEQQHVEQKAISGQLKLLYLSPEKV--MTQGFF 126
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
I+L A+DE HCVS+WGHDFRP+Y L LR F ++P+MALTAT
Sbjct: 127 HFISHCKISLIAVDEAHCVSQWGHDFRPEYTLLGGLRSTFP---------NVPMMALTAT 177
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A R DI+ L + + + L SF RPN+R++V+
Sbjct: 178 ADPTTRHDIIHHLRLQEPHTY-LGSFDRPNIRYTVQ 212
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 138/275 (50%), Gaps = 17/275 (6%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L+ + I+Y +RK+ I + L GV Y+A + Q V
Sbjct: 216 KPMEQLAKFIAKQQGKSGIVYCNSRKKVEEITEKLSARGVSVMGYHAGMTIQQRETVQNA 275
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD ++ +L+ +
Sbjct: 276 FQRDNIQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPSEAILFYD 335
Query: 618 LSSMP----TLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
+ LL SE + + +++ + CR +L+ YFGE E C+
Sbjct: 336 PADYAWLQKVLLEEPESEQRNIKQHKL--QAISAFAESQTCRRLVLLNYFGES-KQEPCK 392
Query: 674 LCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMF 733
CD+C+D PP + +A +M VI Q+ M G+ G+ QK + ++
Sbjct: 393 NCDICLD-PPRKYDGLIDAQKVMSVIYRTG-QTFGMHHVIGVLRGMNNQKIRQFGHDQLS 450
Query: 734 VSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
V I +EQSQ Y W + R + + G IR+
Sbjct: 451 VYGIGKEQSQDY-------WVSVIRQLIHLGLIRQ 478
>gi|83718492|ref|YP_443578.1| ATP-dependent DNA helicase RecQ [Burkholderia thailandensis E264]
gi|83652317|gb|ABC36380.1| ATP-dependent DNA helicase RecQ [Burkholderia thailandensis E264]
Length = 644
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 131/219 (59%), Gaps = 21/219 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVI 219
+L + FG+ + + Q E + A DCLVL TG GKSLC+QIPAL+ + +V+
Sbjct: 36 ILNEVFGYPAFRGQQGEIVEHVAAGGDCLVLMPTGGGKSLCYQIPALVRSESGRGAGIVV 95
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + LS+ GV A +L S + ++ALR G ++YV PE RL+
Sbjct: 96 SPLIALMQDQVAALSEVGVRAAYLNSTLSGAEAAATERALRDGDIDLLYVAPE---RLMT 152
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P L E I LFAIDE HCVS+WGHDFRP+Y +LSVL E F D+P +A
Sbjct: 153 PRFLDLLERARIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------DVPRIA 203
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA R++I++ L + FV +SF RPN+R+ +
Sbjct: 204 LTATADAITRDEIVQRLALDDARIFV-SSFDRPNIRYRI 241
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 11/195 (5%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVV 567
DG T ++Y +R++ A++L GV+A Y+A + + ++R+ H E F + V+
Sbjct: 263 DGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGM-EFEIRQKHQEMFQREEGIVMC 321
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 322 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKM 381
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D T+ CR L+ YFGE + C CD C++ PP
Sbjct: 382 IDESDADDTHKRVQTSKLDALLGLCETASCRRVRLLAYFGE--TSGPCGNCDTCLE-PPA 438
Query: 685 MKNLKEEANILMQVI 699
+ EA + + +
Sbjct: 439 TWDATREAQMALSCV 453
>gi|226693393|ref|NP_031576.4| Bloom syndrome protein homolog isoform 1 [Mus musculus]
Length = 1419
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 669 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 728
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 729 SLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLI 788
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 789 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 839
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 840 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 877
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 103/184 (55%), Gaps = 14/184 (7%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEV 565
P + G IIY +R+E ++A L G+ A AY+A L S V H +++ +V
Sbjct: 896 HHPYDSG--IIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQV 953
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMP 622
+ ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ CVL Y +++ +
Sbjct: 954 ICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLK 1013
Query: 623 TLLPSRRSED-QTKQAY-RMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL----- 674
L+ + + TK+ + L Y N + CR L+ YFGE F+ + C+
Sbjct: 1014 RLIMMEKDGNYHTKETHVNNLYSMVHYCENITECRRIQLLAYFGEKGFNPDFCKKYPDVS 1073
Query: 675 CDVC 678
CD C
Sbjct: 1074 CDNC 1077
>gi|226198145|ref|ZP_03793716.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei Pakistan
9]
gi|225929665|gb|EEH25681.1| ATP-dependent DNA helicase RecQ [Burkholderia pseudomallei Pakistan
9]
Length = 670
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 131/219 (59%), Gaps = 21/219 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV----VVI 219
+L + FG+ + + Q E + A DCLVL TG GKSLC+QIPAL+ + +V+
Sbjct: 62 ILNEVFGYPAFRGQQGEIVEHVAAGGDCLVLMPTGGGKSLCYQIPALVRSEAGRGAGIVV 121
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + LS+ GV A +L S + ++ALR G ++YV PE RL+
Sbjct: 122 SPLIALMQDQVAALSEVGVRAAYLNSTLSGAEAAATERALRDGDIDLLYVAPE---RLMT 178
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P L E I LFAIDE HCVS+WGHDFRP+Y +LSVL E F D+P +A
Sbjct: 179 PRFLDLLERARIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------DVPRIA 229
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA R++I++ L + FV +SF RPN+R+ +
Sbjct: 230 LTATADAITRDEIVQRLALDDARIFV-SSFDRPNIRYRI 267
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 11/195 (5%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVV- 567
DG T ++Y +R++ A++L GV+A Y+A + + ++R+ H E + + VV+
Sbjct: 289 DGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGM-EFEIRQKHQEMFQREEGVVMC 347
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 348 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPANAWMAYGLGDVVQQRKM 407
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D T+ CR L+ YFGE + C CD C++ PP
Sbjct: 408 IDESEADDTHKRVQTSKLDALLGLCETASCRRVRLLAYFGE--TSGPCGNCDTCLE-PPA 464
Query: 685 MKNLKEEANILMQVI 699
+ EA + + +
Sbjct: 465 TWDATREAQMALSCV 479
>gi|148675035|gb|EDL06982.1| Bloom syndrome homolog (human), isoform CRA_a [Mus musculus]
Length = 1420
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 670 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 729
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 730 SLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLI 789
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 790 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 840
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 841 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 878
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 103/184 (55%), Gaps = 14/184 (7%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEV 565
P + G IIY +R+E ++A L G+ A AY+A L S V H +++ +V
Sbjct: 897 HHPYDSG--IIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQV 954
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMP 622
+ ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ CVL Y +++ +
Sbjct: 955 ICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLK 1014
Query: 623 TLLPSRRSED-QTKQAY-RMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL----- 674
L+ + + TK+ + L Y N + CR L+ YFGE F+ + C+
Sbjct: 1015 RLIMMEKDGNYHTKETHVNNLYSMVHYCENITECRRIQLLAYFGEKGFNPDFCKKYPDVS 1074
Query: 675 CDVC 678
CD C
Sbjct: 1075 CDNC 1078
>gi|386743723|ref|YP_006216902.1| ATP-dependent DNA helicase RecQ [Providencia stuartii MRSN 2154]
gi|384480416|gb|AFH94211.1| ATP-dependent DNA helicase RecQ [Providencia stuartii MRSN 2154]
Length = 608
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 130/217 (59%), Gaps = 19/217 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+L FG+ S + Q+ + A L + DCLVL TG GKSLC+Q+PAL+ V +V+SPL
Sbjct: 15 SILNNTFGYQSFRPGQEAVIRAILDNRDCLVLMPTGGGKSLCYQVPALVKEGVTLVVSPL 74
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKP-- 277
ISLM DQ +L HG+ A L S Q + V G ++YV PE RL+
Sbjct: 75 ISLMKDQVDQLRLHGIKAACLNSSQTAQEQRDVMALCAEGAIKLLYVAPE---RLLTDYF 131
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L +L+ S I+L A+DE HCVS+WGHDFRP+YR + LR++F D+P+MALT
Sbjct: 132 LSQLS-SWNISLLAVDEAHCVSQWGHDFRPEYRAIGQLRQHFP---------DVPIMALT 181
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ATA R DI++ L + ++SF RPN+R+++
Sbjct: 182 ATADETTRADIVRLLALHDPL-IQISSFDRPNIRYTL 217
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 107/198 (54%), Gaps = 13/198 (6%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP ++L + + I+Y +R + A+ L G+ AAY+A L Q V
Sbjct: 222 KPLDQLWFFIKAQKGKAGIVYCNSRSKVEETAERLQKRGLSVAAYHAGLDNQQREWVQDA 281
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F ++ L++VVAT+AFGMGI+K NVR + H+ P+++EAYYQE GRAGRDG A+ VL+ +
Sbjct: 282 FLKDNLQIVVATVAFGMGINKSNVRFVAHFDIPRNIEAYYQETGRAGRDGVEAEAVLFYD 341
Query: 618 LSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMN-------TSCCRAKILVEYFGEDFSHE 670
+ M L RR ++ + D R+ +N CR +L+ YFGE+
Sbjct: 342 PADMAWL---RRCLEEKPAGLQ--QDIERHKLNAIAAFAEAQTCRRLVLLNYFGEN-RQA 395
Query: 671 KCQLCDVCVDGPPEMKNL 688
C CD+C+D P + L
Sbjct: 396 PCGNCDICLDPPKQYDGL 413
>gi|71728516|gb|EAO30674.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Xylella fastidiosa Ann-1]
Length = 645
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 15/217 (6%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
++L++ FG+ + + Q+ + A HD LVL TG GKSLC+Q+PALL + VVIS
Sbjct: 52 TQTVLQRVFGYDTFRGPQQAIIEHVAAGHDALVLMPTGGGKSLCYQVPALLRKGIGVVIS 111
Query: 221 PLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ L + GV A +L S ++E + ++Y+ PE + L
Sbjct: 112 PLIALMQDQVETLRQLGVRAAYLNSTLDATQAQRIEHALVTADLDLLYIAPERL--LTAH 169
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + +P +ALT
Sbjct: 170 FLSLLERSQIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HVPRIALT 220
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ATA + +I + L +S F+ +SF RPN+R++V
Sbjct: 221 ATADPPTQREIAERLDLSDAHHFI-SSFDRPNIRYTV 256
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 10/200 (5%)
Query: 489 SFERTDLLNKPAERLSM---LQEPL---EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ ++ +M LQE L + I+Y +R++T IA YLC G A Y
Sbjct: 246 SFDRPNIRYTVVQKNNMRRQLQEFLSRHRNTAGIVYAMSRRKTEEIAAYLCTQGYNALPY 305
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A LP + F + V+ ATIAFGMGI+K +VR + H P+SLE YYQE GR
Sbjct: 306 HAGLPAETRAKHQRCFLREEGIVMCATIAFGMGINKPDVRFVAHIDLPKSLEGYYQETGR 365
Query: 603 AGRDGHLAD---CVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A+ C ++ + ++ + + K R D + CR ++L
Sbjct: 366 AGRDGEAAEAWMCYSLGDVVLLKQMIEQSEASEARKCVERAKLDHLLGYCESMQCRRQLL 425
Query: 660 VEYFGEDFSHEKCQLCDVCV 679
+ FGE + + C CD C+
Sbjct: 426 LSSFGETYPN-PCGNCDNCL 444
>gi|15837982|ref|NP_298670.1| DNA helicase [Xylella fastidiosa 9a5c]
gi|9106386|gb|AAF84190.1|AE003969_7 DNA helicase [Xylella fastidiosa 9a5c]
Length = 645
Score = 162 bits (411), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 127/216 (58%), Gaps = 15/216 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
++L++ FG+ + + Q+ + A HD LVL TG GKSLC+Q+PALL + VVISP
Sbjct: 53 QTVLQRVFGYDTFRGPQQAIIEHVAAGHDALVLMPTGGGKSLCYQVPALLRKGIGVVISP 112
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ L + GV A +L S ++E + ++Y+ PE + L
Sbjct: 113 LIALMQDQVETLRQLGVRAAYLNSTLDATQAQRIEHALVTADLDLLYIAPERL--LTAHF 170
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L E IALFAIDE HCVS+WGHDFRP+YR+L+VL E + +P +ALTA
Sbjct: 171 LSLLERSQIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWP---------HVPRIALTA 221
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA + +I + L +S F+ +SF RPN+R++V
Sbjct: 222 TADPPTQREIAERLDLSDAHHFI-SSFDRPNIRYTV 256
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 10/200 (5%)
Query: 489 SFERTDLLNKPAERLSM---LQEPL---EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ ++ +M LQE L + I+Y +R++T IA YLC G A Y
Sbjct: 246 SFDRPNIRYTVVQKNNMRRQLQEFLGRHRNTAGIVYAMSRRKTEEIAAYLCTQGYNALPY 305
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A LP + F + V+ ATIAFGMGI+K +VR + H P+SLE YYQE GR
Sbjct: 306 HAGLPVETRAKHQRCFLREEGIVMCATIAFGMGINKPDVRFVAHIDLPKSLEGYYQETGR 365
Query: 603 AGRDGHLAD---CVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A+ C ++ + ++ + + K R D + CR ++L
Sbjct: 366 AGRDGEAAEAWMCYSLGDVVLLKQMIEQSEASEARKCVERAKLDHLLGYCESMQCRRQLL 425
Query: 660 VEYFGEDFSHEKCQLCDVCV 679
+ FGE + + C CD C+
Sbjct: 426 LSSFGETYPN-PCGNCDNCL 444
>gi|355692996|gb|EHH27599.1| Bloom syndrome protein [Macaca mulatta]
Length = 1416
Score = 162 bits (411), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 657 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 716
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE + RLI
Sbjct: 717 SLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLI 776
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 777 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 827
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 828 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 865
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 101/182 (55%), Gaps = 14/182 (7%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVV 567
P + G IIY +R+E ++A L G+ A AY+A L S V ++ +++ +V+
Sbjct: 886 PYDSG--IIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVIC 943
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--- 624
ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L
Sbjct: 944 ATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRL 1003
Query: 625 -LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL-----CD 676
+ + T++ + L Y N + CR L+ YFGE+ F+ + C+ CD
Sbjct: 1004 IIMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCD 1063
Query: 677 VC 678
C
Sbjct: 1064 NC 1065
>gi|167582628|ref|ZP_02375502.1| ATP-dependent DNA helicase RecQ [Burkholderia thailandensis TXDOH]
gi|167620742|ref|ZP_02389373.1| ATP-dependent DNA helicase RecQ [Burkholderia thailandensis Bt4]
gi|257137639|ref|ZP_05585901.1| ATP-dependent DNA helicase RecQ [Burkholderia thailandensis E264]
Length = 615
Score = 162 bits (411), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 131/219 (59%), Gaps = 21/219 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVI 219
+L + FG+ + + Q E + A DCLVL TG GKSLC+QIPAL+ + +V+
Sbjct: 7 ILNEVFGYPAFRGQQGEIVEHVAAGGDCLVLMPTGGGKSLCYQIPALVRSESGRGAGIVV 66
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + LS+ GV A +L S + ++ALR G ++YV PE RL+
Sbjct: 67 SPLIALMQDQVAALSEVGVRAAYLNSTLSGAEAAATERALRDGDIDLLYVAPE---RLMT 123
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P L E I LFAIDE HCVS+WGHDFRP+Y +LSVL E F D+P +A
Sbjct: 124 PRFLDLLERARIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------DVPRIA 174
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA R++I++ L + FV +SF RPN+R+ +
Sbjct: 175 LTATADAITRDEIVQRLALDDARIFV-SSFDRPNIRYRI 212
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 11/195 (5%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVV 567
DG T ++Y +R++ A++L GV+A Y+A + + ++R+ H E F + V+
Sbjct: 234 DGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGM-EFEIRQKHQEMFQREEGIVMC 292
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 293 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKM 352
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D T+ CR L+ YFGE + C CD C++ PP
Sbjct: 353 IDESDADDTHKRVQTSKLDALLGLCETASCRRVRLLAYFGE--TSGPCGNCDTCLE-PPA 409
Query: 685 MKNLKEEANILMQVI 699
+ EA + + +
Sbjct: 410 TWDATREAQMALSCV 424
>gi|383420697|gb|AFH33562.1| Bloom syndrome protein [Macaca mulatta]
Length = 1416
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 657 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 716
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE + RLI
Sbjct: 717 SLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLI 776
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 777 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 827
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 828 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 865
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 105/182 (57%), Gaps = 14/182 (7%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVV 567
P + G IIY +R+E ++A L G+ A AY+A L S V ++ +++ +V+
Sbjct: 886 PYDSG--IIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVIC 943
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTL 624
ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L Y +++ + L
Sbjct: 944 ATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRL 1003
Query: 625 LPSRRSED-QTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL-----CD 676
+ + + T++ + L Y N + CR L+ YFGE+ F+ + C+ CD
Sbjct: 1004 IIMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCD 1063
Query: 677 VC 678
C
Sbjct: 1064 NC 1065
>gi|398872899|ref|ZP_10628175.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM74]
gi|398201425|gb|EJM88305.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM74]
Length = 708
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIRRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + + IALFAIDE HCVS+WGHDFRP+Y +L L E F D+P +A
Sbjct: 121 PRMLSFLQGLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I+ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVTRLHLQDAERF-LSSFDRPNIFYRI 209
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 108/204 (52%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +L G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLAERRSDA-GIVYCLSRKKVEEVAAFLSEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP + LR H + F + ++VAT+AFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NDLRAYHQKRFLNEEGLIMVATVAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GR GRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 317 GRGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED E C CD CVDG
Sbjct: 377 TLLAYFDEDMP-EPCGHCDNCVDG 399
>gi|194901954|ref|XP_001980516.1| GG17198 [Drosophila erecta]
gi|190652219|gb|EDV49474.1| GG17198 [Drosophila erecta]
Length = 1457
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 130/221 (58%), Gaps = 18/221 (8%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG S + Q + ++A L +DC VL TG GKSLC+Q+PA+LT V +VISPL SL+ D
Sbjct: 703 FGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFD 762
Query: 229 QCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETV---IRLIKPLQR 280
Q +KL+ + A L Q V + ++ M ++YV PE + R L
Sbjct: 763 QINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQDTLDT 822
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L + I+ F IDE HCVS+WGHDFRPDY++L VL++ F ++P +ALTATA
Sbjct: 823 LNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFP---------NVPTIALTATA 873
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
T +VR DIL L++ K K+ L+SF R NLR+ V K +S
Sbjct: 874 TPRVRLDILAQLNL-KNCKWFLSSFNRSNLRYRVLPKKGAS 913
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 103/182 (56%), Gaps = 24/182 (13%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RKE +K +C GV+A AY+A L ++ ++ K+ V+ ATIAFGMG
Sbjct: 932 IIYCLSRKECDETSKRMCKDGVRAVAYHAGLTDTEREGRQKDWLTGKIRVICATIAFGMG 991
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR ++HY P+S+E YYQEAGRAGRDG +ADC+LY N + M L ++ D K
Sbjct: 992 IDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYADM---LRIKKMMDSDK 1048
Query: 636 ------------QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-----QLCDVC 678
YR++ C N + CR ++YFGE F+ E+C CD C
Sbjct: 1049 ALQYNVKKIHVDNLYRIVGYC----ENLTDCRRAQQLDYFGEHFTSEQCLANKETACDNC 1104
Query: 679 VD 680
++
Sbjct: 1105 LN 1106
>gi|109082375|ref|XP_001097543.1| PREDICTED: Bloom syndrome protein [Macaca mulatta]
Length = 1416
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 657 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 716
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE + RLI
Sbjct: 717 SLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLI 776
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 777 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 827
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 828 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 865
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 101/182 (55%), Gaps = 14/182 (7%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVV 567
P + G IIY +R+E ++A L G+ A AY+A L S V ++ +++ +V+
Sbjct: 886 PYDSG--IIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVIC 943
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--- 624
ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L
Sbjct: 944 ATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRL 1003
Query: 625 -LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL-----CD 676
+ + T++ + L Y N + CR L+ YFGE+ F+ + C+ CD
Sbjct: 1004 IIMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCD 1063
Query: 677 VC 678
C
Sbjct: 1064 NC 1065
>gi|418528117|ref|ZP_13094067.1| ATP-dependent DNA helicase RecQ [Comamonas testosteroni ATCC 11996]
gi|371454493|gb|EHN67495.1| ATP-dependent DNA helicase RecQ [Comamonas testosteroni ATCC 11996]
Length = 636
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 132/229 (57%), Gaps = 19/229 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL----LTGKVVV 217
S+L+ FG+ + Q+ +S + D LVL TG GKSLC+Q+PA+ L V +
Sbjct: 5 QSILQAVFGYEQFRGPQQAIVSHVINGGDALVLMPTGGGKSLCYQVPAIARQQLGHGVTI 64
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR---GMYSIIYVCPETV--I 272
V+SPLI+LMHDQ L + G++A +L S ++ ++ LR G +++Y PE +
Sbjct: 65 VVSPLIALMHDQVGALHEAGISAAYLNSTLSYDETQEVELRLQSGDITLLYAAPERLNTP 124
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
R + L L ++LFAIDE HCVS+WGHDFRP+YR LSVL + + ++P
Sbjct: 125 RFLGLLDDLHAQGKLSLFAIDEAHCVSQWGHDFRPEYRALSVLHQRYA---------EVP 175
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
+ALTATA R DI++ L + F+ +SF RPN+R+ + K S
Sbjct: 176 RIALTATADALTRADIIERLQLEAAQHFI-SSFDRPNIRYKIAEKKDVS 223
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 115/243 (47%), Gaps = 25/243 (10%)
Query: 489 SFERTDLLNKPAER-------LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ K AE+ L ++ E ++Y +RK +A+ L G+ A
Sbjct: 206 SFDRPNIRYKIAEKKDVSNQLLRFIEREHEGEAGVVYCQSRKRVEELAQTLVQNGINALP 265
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A LP+ + F + V+ ATIAFGMGI+K +VR + H P+++E YYQE G
Sbjct: 266 YHAGLPQEMRQNHQDRFLREEGVVMCATIAFGMGINKPDVRFVAHVDMPKNIEGYYQETG 325
Query: 602 RAGRDGHLADCVLYANLSSMPT---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG AD + LS + ++ +E+Q KQ R D + CR
Sbjct: 326 RAGRDGLPADAWMAYGLSDVVNQRRMIDESPAEEQFKQVMRGKLDALLGLAEATDCRRVR 385
Query: 659 LVEYFGEDFSHE--------------KCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNE 704
L+ YFGE + E C CD C++ PP + + + A L+ I +E
Sbjct: 386 LLAYFGEQYGQEPSLDGKPLQAVARTHCGNCDNCLE-PPALWDGTDAARKLLSTIFRVHE 444
Query: 705 QSN 707
S
Sbjct: 445 ASG 447
>gi|392963657|ref|ZP_10329081.1| ATP-dependent DNA helicase RecQ [Fibrisoma limi BUZ 3]
gi|387847620|emb|CCH51120.1| ATP-dependent DNA helicase RecQ [Fibrisoma limi BUZ 3]
Length = 715
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 123/213 (57%), Gaps = 15/213 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK+++G+ + Q++ + + L D LVL TG GKS+CFQIPAL+ + VV+SPLI+
Sbjct: 21 LKRYYGYDRFRPMQEDIVRSILRGRDTLVLMPTGGGKSVCFQIPALMMPGICVVVSPLIA 80
Query: 225 LMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L +G+ A F SG+ +E ++G ++YV PE + L +
Sbjct: 81 LMKDQVEALHMNGIPAAFYNSTQSGKEQRAIEDDCVKGKIKLLYVSPEKM--LTESFFVF 138
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+ I+LFAIDE HC+S WGHDFRP+Y +L VL+E+F +P +ALTATA
Sbjct: 139 LKRINISLFAIDEAHCISSWGHDFRPEYTQLHVLKEHFPT---------VPTVALTATAD 189
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
R DI + L M+ F+ SF RPNL V
Sbjct: 190 KLTRNDIAQRLGMNDPAVFI-ASFNRPNLSLKV 221
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 107/201 (53%), Gaps = 12/201 (5%)
Query: 489 SFERTDL-------LNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF R +L N+ + + +LQ+ D IIY +RK T S+A L G KAA
Sbjct: 211 SFNRPNLSLKVLPGTNRLPQIIKLLQQK-PDTSGIIYCLSRKSTESLAAKLQEKGFKAAF 269
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A + + F + + ++ ATIAFGMGIDK NVR +IHY P+++E++YQE G
Sbjct: 270 YHAKMDPEDRAKTQEAFLRDDVRIMCATIAFGMGIDKSNVRWVIHYNLPKNIESFYQEIG 329
Query: 602 RAGRDGHLADCVLYANLSSMPTL--LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
RAGRDG A VL+ + + + T + S + L +Y + + CR +IL
Sbjct: 330 RAGRDGAEAQTVLFYSFADVATYKDMLSESAPANLGLQLAKLERMQQYA-DANTCRRQIL 388
Query: 660 VEYFGEDFSHEKCQLCDVCVD 680
+ YF ED E C CDVC D
Sbjct: 389 LSYFSEDLP-EPCGNCDVCRD 408
>gi|373858520|ref|ZP_09601256.1| ATP-dependent DNA helicase RecQ [Bacillus sp. 1NLA3E]
gi|372451660|gb|EHP25135.1| ATP-dependent DNA helicase RecQ [Bacillus sp. 1NLA3E]
Length = 714
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 140/247 (56%), Gaps = 23/247 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK HFG+ + QK L + + L + TG GKSLCFQIPAL+ +VISPLI
Sbjct: 8 ILKTHFGYDEFRPGQKMTLEHVFSGQNSLCVMPTGGGKSLCFQIPALVFSGTTIVISPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ L + G+ A ++ S N+++++ A +G+Y ++Y+ PE + + LQ
Sbjct: 68 SLMKDQVDTLQQLGIAATYINSSLTTNEIQERMMQARQGVYKLLYISPERLESGLF-LQE 126
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L E I L A+DE HC+S+WGHDFRP Y +S + L ++ ++ALTATA
Sbjct: 127 LGELE-IPLIAVDEAHCISQWGHDFRPSYMYISSI--------LNHIQTKPIILALTATA 177
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLID-----I 395
T QVR+DI +SL++ V+TSF R NL FSV K R Y D+ + D I
Sbjct: 178 TAQVRQDISQSLNIEHE---VVTSFERNNLSFSV--VKGQDRDRYLLDYVKKNDKESGII 232
Query: 396 YTKKKKT 402
Y +KT
Sbjct: 233 YAATRKT 239
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 97/191 (50%), Gaps = 12/191 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY TRK + + L VK A Y+A L + F ++ ++VAT AFGMG
Sbjct: 231 IIYAATRKTVDQLYQELVKAKVKVARYHAGLSDKERLEQQNAFLLDEKPLMVATSAFGMG 290
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+++E+YYQEAGRAGRDG + C+L R DQT
Sbjct: 291 IDKSNVRYVIHYQMPRNMESYYQEAGRAGRDGLDSTCILLYGPGDTQI---HRFLIDQTL 347
Query: 636 QAYRM------LSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLK 689
+ R+ L+ Y +C ++ I VEYF E S C C C D E ++
Sbjct: 348 ERNRIPLELEKLNQMVGYCHTENCLQSWI-VEYFNEA-SAGSCGRCSNCTD-TREAVDVS 404
Query: 690 EEANILMQVIA 700
+EA I++ I
Sbjct: 405 KEAQIVLSCIV 415
>gi|167571568|ref|ZP_02364442.1| ATP-dependent DNA helicase RecQ [Burkholderia oklahomensis C6786]
Length = 615
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 136/228 (59%), Gaps = 22/228 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV----VVI 219
+L + FG+ + + Q E + A DCLVL TG GKSLC+QIPAL+ + +V+
Sbjct: 7 ILNEVFGYPAFRGQQGEIVEHVAAGGDCLVLMPTGGGKSLCYQIPALVRNEAGCGAGIVV 66
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + LS+ GV A +L S + ++ALR G ++YV PE RL+
Sbjct: 67 SPLIALMQDQVAALSEVGVRAAYLNSTLSGAEAAATERALRDGDIDLLYVAPE---RLMT 123
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P L E I LFAIDE HCVS+WGHDFRP+Y +LSVL E F D+P +A
Sbjct: 124 PRFLDLLERARIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------DVPRIA 174
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
LTATA R++I++ L + FV +SF RPN+R+ + K ++RA
Sbjct: 175 LTATADAITRDEIVQRLALDDARIFV-SSFDRPNIRYRIVE-KDNARA 220
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 22/237 (9%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVV 567
DG T ++Y +R++ A++L GV+A Y+A + + +R+ H E F + V+
Sbjct: 234 DGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGM-EFGIRQRHQEMFQREEGVVMC 292
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 293 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKM 352
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D T+ CR L+ YFGE + C CD C++ PP
Sbjct: 353 IDESDADDTHKRVQTSKLDALLGLCETASCRRVRLLAYFGE--TSAPCGNCDTCIE-PPA 409
Query: 685 MKNLKEEANILM------QVIAAYNEQSNSMDDDDGIYSGIKKQKFMDR--PNLKMF 733
+ EA + + Q + +N ++ + + + G + +K + R NL F
Sbjct: 410 TWDATREARMALSCVFRAQRASGFNFGASHLIE---VLRGARNEKVLQRGHENLSTF 463
>gi|167564422|ref|ZP_02357338.1| ATP-dependent DNA helicase RecQ [Burkholderia oklahomensis EO147]
Length = 615
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 136/228 (59%), Gaps = 22/228 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV----VVI 219
+L + FG+ + + Q E + A DCLVL TG GKSLC+QIPAL+ + +V+
Sbjct: 7 ILNEVFGYPAFRGQQGEIVEHVAAGGDCLVLMPTGGGKSLCYQIPALVRNEAGCGAGIVV 66
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + LS+ GV A +L S + ++ALR G ++YV PE RL+
Sbjct: 67 SPLIALMQDQVAALSEVGVRAAYLNSTLSGAEAAATERALRDGDIDLLYVAPE---RLMT 123
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P L E I LFAIDE HCVS+WGHDFRP+Y +LSVL E F D+P +A
Sbjct: 124 PRFLDLLERARIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------DVPRIA 174
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
LTATA R++I++ L + FV +SF RPN+R+ + K ++RA
Sbjct: 175 LTATADAITRDEIVQRLALDDARIFV-SSFDRPNIRYRIVE-KDNARA 220
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 22/237 (9%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVV 567
DG T ++Y +R++ A++L GV+A Y+A + + +R+ H E F + V+
Sbjct: 234 DGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGM-EFGIRQRHQEMFQREEGVVMC 292
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 293 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKM 352
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D T+ CR L+ YFGE + C CD C++ PP
Sbjct: 353 IDESDADDTHKRVQTSKLDALLGLCETASCRRVRLLAYFGE--TSAPCGNCDTCIE-PPA 409
Query: 685 MKNLKEEANILM------QVIAAYNEQSNSMDDDDGIYSGIKKQKFMDR--PNLKMF 733
+ EA + + Q + +N ++ + + + G + +K + R NL F
Sbjct: 410 TWDATREARMALSCVFRAQRASGFNFGASHLIE---VLRGARNEKVLQRGHENLSTF 463
>gi|30681987|ref|NP_172562.2| ATP-dependent DNA helicase Q-like 4A [Arabidopsis thaliana]
gi|75329797|sp|Q8L840.1|RQL4A_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 4A; AltName:
Full=RecQ-like protein 4A; Short=AtRecQ4A;
Short=AtRecQl4A; AltName: Full=SGS1-like protein;
Short=AtSGS1
gi|21539533|gb|AAM53319.1| DNA helicase isolog [Arabidopsis thaliana]
gi|33589672|gb|AAQ22602.1| At1g10930 [Arabidopsis thaliana]
gi|332190544|gb|AEE28665.1| ATP-dependent DNA helicase Q-like 4A [Arabidopsis thaliana]
Length = 1188
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 135/227 (59%), Gaps = 20/227 (8%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W K+ KK FG+ S + Q+E ++A ++ D VL TG GKSL +Q+PAL+ G +
Sbjct: 437 WTRKLEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGIT 496
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSG-----QPDNKVEQKALRGMYSIIYVCPETV 271
+VISPL+SL+ DQ L + + A L +G Q E + Y ++YV PE V
Sbjct: 497 LVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKV 556
Query: 272 IR---LIKPLQRLAESRG-IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
+ L++ L+ L SRG +A F IDE HCVS+WGHDFRPDY+ L +L++ F
Sbjct: 557 AKSDSLLRHLENL-NSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFP------- 608
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+IP++ALTATAT V+ED++++L + F SF RPNL +SV
Sbjct: 609 --NIPVLALTATATASVKEDVVQALGLVNCVVF-RQSFNRPNLWYSV 652
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 97/190 (51%), Gaps = 27/190 (14%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
D IIY +R + +++ L FG KAA Y+ S+ Q + T++ ++++ ++ AT+A
Sbjct: 673 DECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVA 732
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---------------- 615
FGMGI+K +VR +IH+ P+S+E Y+QE GRAGRDG + CVLY
Sbjct: 733 FGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQG 792
Query: 616 -ANLSSMPT-----LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSH 669
+ S M T R E T+ RM+ RY N CR + + + GE F
Sbjct: 793 GVDQSPMATGYNRVASSGRLLETNTENLLRMV----RYCENEVECRRFLQLVHLGEKFDS 848
Query: 670 EKC-QLCDVC 678
C + CD C
Sbjct: 849 TNCKKTCDNC 858
>gi|288959399|ref|YP_003449740.1| ATP-dependent DNA helicase [Azospirillum sp. B510]
gi|288911707|dbj|BAI73196.1| ATP-dependent DNA helicase [Azospirillum sp. B510]
Length = 640
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 133/220 (60%), Gaps = 19/220 (8%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+ FG+ S + Q + + + D LVL TG GKSLC+QIPAL+ V VV+SPLI+
Sbjct: 28 LRTVFGYDSFRGQQADIIDHVVRGGDALVLMPTGGGKSLCYQIPALVRDGVTVVVSPLIA 87
Query: 225 LMHDQCSKLSKHGVTACFLGS--GQPDNK-VEQKALRGMYSIIYVCPETVIRLIKP--LQ 279
LM DQ + L + GV A FL S G + + VE+ ++G ++YV PE RL+ P L
Sbjct: 88 LMRDQVTALRELGVRAAFLNSSLGPAEAREVERAMVQGEIDLVYVAPE---RLVTPRFLD 144
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L +R +ALFA+DE HCVS+WGHDFRP+Y +LS+L E +P +ALTAT
Sbjct: 145 LLDRTR-LALFALDEAHCVSQWGHDFRPEYLQLSILHERHPM---------VPRIALTAT 194
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT 379
A +Q R +I L +S+ F L+SF RPN+ + V K+
Sbjct: 195 ADVQTRAEIKDKLGLSEARVF-LSSFDRPNITYRVVPKKS 233
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 107/202 (52%), Gaps = 11/202 (5%)
Query: 489 SFERTDL----LNKPAER---LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + K +ER L+ L++ + IIY +R + +A +L G +A
Sbjct: 218 SFDRPNITYRVVPKKSERQQMLAFLRDNHPEDAGIIYCMSRNKVEEVAAWLNQQGREALP 277
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A LP F +++ V+VAT+AFGMGIDK NVR + H P+SLEAYYQE G
Sbjct: 278 YHAGLPAEVREANQDRFIKSEGLVMVATVAFGMGIDKPNVRFVCHLDPPKSLEAYYQETG 337
Query: 602 RAGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG A+ + A++ + +L + D ++ R + T CR ++
Sbjct: 338 RAGRDGLPANAWMAYGMADVVMLRQMLEQSEAGDSHRRVERGKLEALLGFCETPDCRRQV 397
Query: 659 LVEYFGEDFSHEKCQLCDVCVD 680
L+ YF E E C CD C+D
Sbjct: 398 LLNYFNETLP-EPCGNCDTCLD 418
>gi|58040835|ref|YP_192799.1| ATP-dependent DNA helicase RecQ [Gluconobacter oxydans 621H]
gi|58003249|gb|AAW62143.1| ATP-dependent DNA helicase RecQ [Gluconobacter oxydans 621H]
Length = 651
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 106/277 (38%), Positives = 146/277 (52%), Gaps = 27/277 (9%)
Query: 110 VSVSGSVVSPSIVEEQKESYPGMDCNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHF 169
+ S V PS+ + PGM + A + P V GS+ +L + F
Sbjct: 8 IPTSPCVAFPSLSFRVTDPAPGM---------TQAQNSPP-VAPGSNQPPTPEGVLAEVF 57
Query: 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQ 229
G + Q++A+ + D LVL TG GKSLC+Q+PAL + +VISPLI+LM DQ
Sbjct: 58 GFPGFRGLQQDAVETVMRGEDVLVLMPTGGGKSLCYQVPALCRDGMGLVISPLIALMDDQ 117
Query: 230 CSKLSKHGVTACFLGSG-QPDNKVE-QKALR-GMYSIIYVCPETVIRLIKP-LQRLAESR 285
+ L + GV A L SG PD + E Q LR G I+Y+ PE RL++P R
Sbjct: 118 VAGLRQLGVRAAALHSGLGPDERDELQSDLRNGRIDILYISPE---RLLQPATANFLSKR 174
Query: 286 GIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVR 345
I+L AIDE HC+S WGH+FRP+YR L+ L E F +P +ALTATA + R
Sbjct: 175 QISLIAIDEAHCISAWGHEFRPEYRALASLPEMFPG---------VPRIALTATADPRTR 225
Query: 346 EDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
+DIL +L M + ++ SF RPNL + + SR
Sbjct: 226 DDILNALGMPD-ARVLMASFHRPNLVVEARAKASESR 261
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 137/288 (47%), Gaps = 20/288 (6%)
Query: 489 SFERTDLLNKPAERLSMLQEPLE------DGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF R +L+ + + S ++ LE +G +I+Y +R +T +A L G+ A +
Sbjct: 243 SFHRPNLVVEARAKASESRQLLETLQNHREGASIVYCGSRNKTERVATMLRDKGLTALPF 302
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L + R F + V+VATIAFGMGID+ +VR ++H P S EAYYQ+ GR
Sbjct: 303 HAGLSSVEKRATLMRFRSGEEMVIVATIAFGMGIDRPDVRCVVHLDMPSSPEAYYQQIGR 362
Query: 603 AGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG +D +L +++ L + D K+ + + T+ CR + L
Sbjct: 363 AGRDGEPSDTLLLYGGEDMARARYWLEQSSAPDHEKRVMQARLESMIALTETTGCRTQAL 422
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGI 719
+ FGE+ + + C CD C+ P + + A ++ I ++ ++ + + G
Sbjct: 423 LACFGENLA-QPCGHCDNCIS-PVSTFDGTQAAQKVLSAIYRTGQRLGAVQLSN-VLRGK 479
Query: 720 KKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIR 766
+ + V I +E S++ WWR + R + +G IR
Sbjct: 480 LNETIERNAYQHLSVFGIGKEHSEQ-------WWRAVIRQLIARGAIR 520
>gi|297849458|ref|XP_002892610.1| DNA helicase [Arabidopsis lyrata subsp. lyrata]
gi|297338452|gb|EFH68869.1| DNA helicase [Arabidopsis lyrata subsp. lyrata]
Length = 1189
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 135/227 (59%), Gaps = 20/227 (8%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W K+ KK FG+ S + Q+E ++A ++ D VL TG GKSL +Q+PAL+ G +
Sbjct: 435 WTRKLEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGIT 494
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSG-----QPDNKVEQKALRGMYSIIYVCPETV 271
+VISPL+SL+ DQ L + + A L +G Q E + Y ++YV PE V
Sbjct: 495 LVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKV 554
Query: 272 IR---LIKPLQRLAESRG-IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
+ L++ L+ L SRG +A F IDE HCVS+WGHDFRPDY+ L +L++ F
Sbjct: 555 AKSDSLLRHLENL-NSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFP------- 606
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+IP++ALTATAT V+ED++++L + F SF RPNL +SV
Sbjct: 607 --NIPVLALTATATASVKEDVVQALGLVNCVVF-RQSFNRPNLWYSV 650
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 97/190 (51%), Gaps = 27/190 (14%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
D IIY +R + +++ L FG K A Y+ S+ Q + T++ ++++ ++ AT+A
Sbjct: 671 DECGIIYCLSRMDCEKVSERLQEFGHKTAFYHGSMEPEQRAFIQTQWSKDEINIICATVA 730
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---------------- 615
FGMGI+K +VR +IH+ P+S+E Y+QE GRAGRDG + CVLY
Sbjct: 731 FGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQG 790
Query: 616 -ANLSSMPTLLP-----SRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSH 669
+ S M T R E T+ RM+S C N CR + + +FGE F
Sbjct: 791 GVDQSPMATGYNRVASLGRILETNTENLLRMVSYC----ENEVECRRFLQLVHFGEKFDS 846
Query: 670 EKC-QLCDVC 678
C + CD C
Sbjct: 847 TNCKKTCDNC 856
>gi|288575145|ref|ZP_06393502.1| ATP-dependent DNA helicase RecQ [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288570886|gb|EFC92443.1| ATP-dependent DNA helicase RecQ [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 603
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 132/220 (60%), Gaps = 25/220 (11%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
LLK+ FG+ + Q +A+ + DCLVL TG GKSLC+QIPA+L + VVISPL
Sbjct: 7 GLLKRLFGYDEFRLNQGDAIDHVMGGGDCLVLMPTGGGKSLCYQIPAILRPGIGVVISPL 66
Query: 223 ISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKP-- 277
I+LMHDQ + L + GV A ++ S + +V + A+RG ++YV PE R +KP
Sbjct: 67 IALMHDQVNGLVQSGVRAAYMNSTMNYEEFVQVSRAAMRGELDLLYVAPE---RAMKPSF 123
Query: 278 ---LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
L R++ +++ AIDE HCVS+WGHDFRP+Y RL L F ++P +
Sbjct: 124 MDFLSRIS----LSVIAIDEAHCVSQWGHDFRPEYLRLGELGRAFP---------EVPRI 170
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
A+TATA R++IL L ++ G FV + F RPN+R+ V
Sbjct: 171 AVTATADELTRKEILSRLDLNGGKVFV-SGFDRPNIRYQV 209
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 98/173 (56%), Gaps = 14/173 (8%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y TR++T SIA++L G+KA +Y+ + + R V F + + VVVATIAFGMG
Sbjct: 233 IVYCMTRRKTESIAQWLRDNGIKALSYHGGMGAEERRTVQERFQDEEAVVVVATIAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSED 632
IDK +VR + H P+SL AYYQE GRAGRDG AD + A+++ L+ ++
Sbjct: 293 IDKPDVRFVAHLDMPKSLAAYYQETGRAGRDGLPADAWMTYGMADVTGQLKLIEMSEGDE 352
Query: 633 QTKQAYR-----MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVD 680
+ K+ R ML C T+ CR + L+ +FG D C CD C++
Sbjct: 353 RYKRISRQNLEIMLGYC-----ETTGCRRRSLLSFFG-DSCDVPCGNCDTCLN 399
>gi|118579582|ref|YP_900832.1| ATP-dependent DNA helicase RecQ [Pelobacter propionicus DSM 2379]
gi|118502292|gb|ABK98774.1| ATP-dependent DNA helicase RecQ [Pelobacter propionicus DSM 2379]
Length = 714
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 131/219 (59%), Gaps = 19/219 (8%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
++ LK FG+ S + Q+E + +A D ++ TG GKSLC+QIPAL V +V+S
Sbjct: 5 LDHTLKSVFGYGSFRPPQREVIQRVVAGEDVFLVMPTGGGKSLCYQIPALHREGVAIVVS 64
Query: 221 PLISLMHDQCSKLSKHGV-TACFLGS--GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP 277
PLISLM DQ L GV AC+ S + V ++ +G ++YV PE RL+ P
Sbjct: 65 PLISLMKDQVDGLVDAGVRAACYNSSLTAEESRAVSRQLAQGELDLLYVAPE---RLLLP 121
Query: 278 --LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+RL + +ALFAIDE HC+S+WGHDFRPDY +L LRE F + +P++A
Sbjct: 122 DFLERLGGLK-LALFAIDEAHCISQWGHDFRPDYVKLGRLRELFPS---------VPIVA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+TATA + R DI++ L + + T FV F RPN+ ++V
Sbjct: 172 MTATADPETRRDIIRQLGIERATLFV-AGFDRPNITYAV 209
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 119/233 (51%), Gaps = 7/233 (3%)
Query: 497 NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHT 556
KP +L + D I+Y +RK + + L G AAAY+A LP + RV
Sbjct: 213 QKPVNQLLSFLKGRGDESGIVYALSRKRVEQVTERLQQAGFDAAAYHAGLPDRERSRVQD 272
Query: 557 EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616
F + L VVVAT+AFGMGIDK NVR ++HY P+S+E+YYQE GRAGRDG + ++
Sbjct: 273 AFRRDDLRVVVATVAFGMGIDKPNVRFVVHYDLPKSVESYYQETGRAGRDGLPSQALMLF 332
Query: 617 NLSSMPT---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
+ + T L+ + + ++ + + L+ Y CR + L+ YFGE + C
Sbjct: 333 GMGDVMTARSLIENSDNAERVRIELQKLNAMVSYA-EALTCRRRALLAYFGEQ-RDDDCG 390
Query: 674 LCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMD 726
CD+C D PP + E A + + E+ S D + G + Q+ ++
Sbjct: 391 NCDICND-PPARFDATEAAQKALSCVYRVGERFGSRHVID-VLRGARGQRILE 441
>gi|11121449|emb|CAC14868.1| DNA Helicase [Arabidopsis thaliana]
Length = 1182
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 135/227 (59%), Gaps = 20/227 (8%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W K+ KK FG+ S + Q+E ++A ++ D VL TG GKSL +Q+PAL+ G +
Sbjct: 431 WTRKLEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGIT 490
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSG-----QPDNKVEQKALRGMYSIIYVCPETV 271
+VISPL+SL+ DQ L + + A L +G Q E + Y ++YV PE V
Sbjct: 491 LVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKV 550
Query: 272 IR---LIKPLQRLAESRG-IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
+ L++ L+ L SRG +A F IDE HCVS+WGHDFRPDY+ L +L++ F
Sbjct: 551 AKSDSLLRHLENL-NSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFP------- 602
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+IP++ALTATAT V+ED++++L + F SF RPNL +SV
Sbjct: 603 --NIPVLALTATATASVKEDVVQALGLVNCVVF-RQSFNRPNLWYSV 646
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 97/190 (51%), Gaps = 27/190 (14%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
D IIY +R + +++ L FG KAA Y+ S+ Q + T++ ++++ ++ AT+A
Sbjct: 667 DECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVA 726
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---------------- 615
FGMGI+K +VR +IH+ P+S+E Y+QE GRAGRDG + CVLY
Sbjct: 727 FGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQG 786
Query: 616 -ANLSSMPT-----LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSH 669
+ S M T R E T+ RM+ RY N CR + + + GE F
Sbjct: 787 GVDQSPMATGYNRVASSGRLLETNTENLLRMV----RYCENEVECRRFLQLVHLGEKFDS 842
Query: 670 EKC-QLCDVC 678
C + CD C
Sbjct: 843 TNCKKTCDNC 852
>gi|34495932|ref|NP_900147.1| ATP-dependent DNA helicase RecQ [Chromobacterium violaceum ATCC
12472]
gi|34101786|gb|AAQ58154.1| ATP-dependent DNA helicase recQ [Chromobacterium violaceum ATCC
12472]
Length = 609
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 128/221 (57%), Gaps = 19/221 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+L FG+ + Q+E + LVL TG GKSLC+QIPALL V +V+SPL
Sbjct: 17 SILNHIFGYPEFRGQQQEIVEQVAHGGHALVLMPTGGGKSLCYQIPALLRDGVAIVVSPL 76
Query: 223 ISLMHDQCSKLSKHGV-TACFLGSGQPDNK--VEQKALRGMYSIIYVCPETVIRLIKP-L 278
I+LM DQ + L + GV AC + PD + ++A G ++YV PE RL+ P
Sbjct: 77 IALMQDQVATLQELGVAAACLNSATSPDEARDIARQARAGTLDLLYVAPE---RLLTPRF 133
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
Q S IALFAIDE HCVS WGHDFRP+Y++L +L E F +P +ALTA
Sbjct: 134 QEFIASLKIALFAIDEAHCVSHWGHDFRPEYQQLGLLAEQFP---------QVPRIALTA 184
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHS 377
TA Q R DI+ L +++ F L+SF RPNL + V KH+
Sbjct: 185 TADEQTRLDIIHYLKLAEARVF-LSSFDRPNLFYQVVEKHN 224
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 13/221 (5%)
Query: 489 SFERTDLLNKPAER-------LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R +L + E+ L +++ + I+Y +RK A++L G++A A
Sbjct: 209 SFDRPNLFYQVVEKHNAKKQLLDFIRQEHQGATGIVYCLSRKRVEDTAQWLRENGIEALA 268
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A + ++ F V+VAT+AFGMGIDK +VR + H P+S E +YQE+G
Sbjct: 269 YHAGMSHAEREANQRLFLREDGIVMVATVAFGMGIDKPDVRFVAHIDMPKSPENFYQESG 328
Query: 602 RAGRDGHLAD---CVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG + C ++ + ++ + KQ D T+ CR +
Sbjct: 329 RAGRDGLPSASWLCYGLNDVVQLRQMIEGGEMAELQKQVELSKLDAMLAFCETAGCRRQH 388
Query: 659 LVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
++ +FGE + + C CD C+ PP + E L+ I
Sbjct: 389 ILAHFGE--ASKPCGHCDNCLH-PPITYDATEPVRKLLSCI 426
>gi|115526900|ref|YP_783811.1| ATP-dependent DNA helicase RecQ [Rhodopseudomonas palustris BisA53]
gi|115520847|gb|ABJ08831.1| ATP-dependent DNA helicase RecQ [Rhodopseudomonas palustris BisA53]
Length = 617
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 138/237 (58%), Gaps = 21/237 (8%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
D + +LL FG + Q++ ++ + DCLVL TG GKSLC+Q+P+LL
Sbjct: 11 DLAARSFALLNSVFGLPGFRGNQEKIVTHVASGGDCLVLMPTGGGKSLCYQLPSLLREGC 70
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVI 272
+V+SPLI+LM DQ + L + GV A L S Q N VEQ+ L G ++YV PE
Sbjct: 71 GIVVSPLIALMRDQVAGLLEAGVRAAVLNSTLSYQEANAVEQQLLDGELDLLYVAPE--- 127
Query: 273 RLIKP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
RL+ P L LA ++ +ALFAIDE HCVS+WGHDFRP+Y LS + E F +
Sbjct: 128 RLLTPRCLSLLARAK-LALFAIDEAHCVSQWGHDFRPEYIGLSAIAEKFP---------N 177
Query: 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY 385
+P +ALTATA R +I + L +++ FV SF RPN+R+ + KH+ S ++
Sbjct: 178 VPRIALTATADDLTRREIAERLGLTEAPCFV-ASFDRPNIRYEIVDKHNAPSQLKAF 233
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 135/296 (45%), Gaps = 30/296 (10%)
Query: 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
DR R +E D N P++ + + E I+Y +R + A L G+ A Y
Sbjct: 212 DRPNIR-YEIVDKHNAPSQLKAFIDERHAGDSGIVYCLSRAKVEDTAAALSRAGITALPY 270
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L + F V+VAT+AFGMGIDK +VR + H P+S+EAYYQE GR
Sbjct: 271 HAGLDAGVRAKNQDRFINEDGVVIVATVAFGMGIDKPDVRFVAHLDLPKSIEAYYQETGR 330
Query: 603 AGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFR----------YGM-NT 651
AGRDG +D + LS ++ RR D++ SD F+ G+ T
Sbjct: 331 AGRDGKPSDAWMAYGLSD---IVQQRRMIDESTG-----SDAFKRVSIGKLEALVGLCET 382
Query: 652 SCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDD 711
+ CR L+ YFGE C CD C+ PP++ + A L+ ++ +M
Sbjct: 383 TGCRRTRLLGYFGETPHEVHCGNCDNCLS-PPKVWDGSVAAQKLLSCAYRTGQRFGAMHL 441
Query: 712 DDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIR 766
D + G ++ + K+ V I E ++K WRG+ R + G++R
Sbjct: 442 ID-VLIGRLTERVTQFGHDKLSVFGIGPELNEKQ-------WRGVIRQLVALGHLR 489
>gi|429218110|ref|YP_007179754.1| ATP-dependent DNA helicase RecQ [Deinococcus peraridilitoris DSM
19664]
gi|429128973|gb|AFZ65988.1| ATP-dependent DNA helicase RecQ [Deinococcus peraridilitoris DSM
19664]
Length = 726
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 135/229 (58%), Gaps = 20/229 (8%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
EV+V LK FG+ + + Q + + A D LVL TG GKSLC+Q+PALL G +
Sbjct: 9 EVQV---LKTVFGYDAFRGPQADIVRHVAAGADALVLMPTGGGKSLCYQVPALLRGATAI 65
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVIRL 274
V+SPLI+LM DQ L + GV A +L S G + + ++ALR G ++YV PE RL
Sbjct: 66 VVSPLIALMKDQVDALRQLGVRAAYLNSSLGAYEAREVEEALRHGELQLLYVAPE---RL 122
Query: 275 IKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
+ P L + ++LFAIDE HCVS+WGHDFRP+Y +L+VL E + +P
Sbjct: 123 MTPRFLDLLDRSEVSLFAIDEAHCVSQWGHDFRPEYLQLAVLAERYP---------HVPR 173
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
+ALTATA R +I++ LH+ +F+ +SF RPN+ + + + R
Sbjct: 174 LALTATADEATRREIVEKLHLQGARQFI-SSFDRPNIHYRIVEKNNALR 221
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 105/201 (52%), Gaps = 13/201 (6%)
Query: 489 SFERTDLLNKPAERLSMLQEPLE------DG-LTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + E+ + L++ LE DG I+Y +RK A +L GV A
Sbjct: 203 SFDRPNIHYRIVEKNNALRQLLEFIRAEHDGDAGIVYCLSRKSVEESAAWLAAQGVSALP 262
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A L R F + V+VAT+AFGMGIDK NVR + H P+SLE YYQE G
Sbjct: 263 YHAGLGPEVRARHQERFLREEGLVMVATVAFGMGIDKPNVRFVAHLDLPKSLEGYYQETG 322
Query: 602 RAGRDGHLADCVL----YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
RAGRDG L VL A++ S+ +L S + + ++ D ++ CR +
Sbjct: 323 RAGRDG-LPSTVLMTYGLADVVSVRRMLASSTAPEPVRRVEGQKLDALLAFAESAQCRRQ 381
Query: 658 ILVEYFGEDFSHEKCQLCDVC 678
+L+ YFGE+ S C CD C
Sbjct: 382 VLLRYFGEELS-APCGNCDTC 401
>gi|398853133|ref|ZP_10609759.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM80]
gi|398241631|gb|EJN27279.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM80]
Length = 709
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIKRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + + IALFAIDE HCVS+WGHDFRP+Y +L L E F D+P +A
Sbjct: 121 PRMLSFLQGLNIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I+ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVTRLHLQNAERF-LSSFDRPNIFYRI 209
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 103/203 (50%), Gaps = 12/203 (5%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +L G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLAERRSDA-GIVYCLSRKKVEEVATFLSEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A LP F + ++VAT+AFGMGIDK NVR + H P+SLEAYYQE G
Sbjct: 258 YHAGLPNDLRAFNQKRFLNEEGLIMVATVAFGMGIDKPNVRFVAHLDLPKSLEAYYQETG 317
Query: 602 RAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
R GRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 318 RGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQT 377
Query: 659 LVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED E C CD CVDG
Sbjct: 378 LLAYFDEDMP-EPCGHCDNCVDG 399
>gi|238760167|ref|ZP_04621314.1| ATP-dependent DNA helicase recQ [Yersinia aldovae ATCC 35236]
gi|238701603|gb|EEP94173.1| ATP-dependent DNA helicase recQ [Yersinia aldovae ATCC 35236]
Length = 605
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 138/222 (62%), Gaps = 19/222 (8%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
E+ +L+ FG+ + Q+E ++A L+ DCLV+ TG GKSLC+QIPAL+T + +
Sbjct: 5 ELLAVQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTL 64
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL-----RGMYSIIYVCPETVI 272
V+SPLISLM DQ +L +GV A L S Q + +Q A+ G ++Y+ PE ++
Sbjct: 65 VVSPLISLMKDQVDQLLAYGVGAGCLNSSQ--TREQQLAVMDGCRSGQIKLLYIAPERLV 122
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
+ L +L + R AL A+DE HC+S+WGHDFRP+YR L L++ F D+P
Sbjct: 123 -MESFLDQLHQWRP-ALLAVDEAHCISQWGHDFRPEYRALGQLKQRFP---------DLP 171
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++ALTATA R DIL+ L++S+ V +SF RPN+R+++
Sbjct: 172 VIALTATADEATRGDILRLLNLSQPLVQV-SSFDRPNIRYTL 212
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 99/187 (52%), Gaps = 13/187 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R + L G+ AAY+A L + +V F + L+VVVAT+AFGMG
Sbjct: 235 IIYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMG 294
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ VL + + M L RR ++
Sbjct: 295 INKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWL---RRCLEEKP 351
Query: 636 QAYRMLSDCFRYGMN-------TSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
+ D R+ +N CR +L+ YFGE + C CD+C+D P L
Sbjct: 352 AGAQ--QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEG-KQQPCGNCDICLDPPKRYDGL 408
Query: 689 KEEANIL 695
+ L
Sbjct: 409 ADAQKAL 415
>gi|303271731|ref|XP_003055227.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463201|gb|EEH60479.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 581
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 133/230 (57%), Gaps = 20/230 (8%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
+W + ++L+ F + Q ++ LA HDCLVL TG GKSLC+Q+PAL++ V
Sbjct: 54 EWSSECRAVLRNTFNAQDFRGMQLATINCTLAKHDCLVLMPTGGGKSLCYQLPALISSGV 113
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRG-MYS------IIYVCP 268
VVISPL+SL+ DQ LS+ + A LGS + + + Q A +YS ++Y+ P
Sbjct: 114 TVVISPLVSLIQDQLHHLSEMNIPAAVLGSAENEGQAAQDATYSQLYSNPPGLKLLYLTP 173
Query: 269 ETVIR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLK 325
E V R L++ L+ L +A +DEVHC+S WGHDFR DY+ L +L++ F
Sbjct: 174 EKVARSPKLMRALETLHGRGMLARIVVDEVHCISSWGHDFRKDYKALRILKDRFR----- 228
Query: 326 SLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+P++ LTATAT +V++D ++ L + + +F T F R N+ + V+
Sbjct: 229 ----QVPVIGLTATATKRVQDDCVRQLGLERCARFFQT-FNRTNIMYEVR 273
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 14/187 (7%)
Query: 536 GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEA 595
G+ A Y+A + + + ++ ++ ++ AT+AFGMGI+K +VR + H+ P+SLEA
Sbjct: 331 GLAAVPYHAGMGEER-EYNQRQWSNGQVSIICATVAFGMGINKPDVRFVFHHSIPKSLEA 389
Query: 596 YYQEAGRAGRDGHLADCVLYANLS----SMPTLLPSRRSEDQTKQAYR----MLSDCFRY 647
Y+QE+GRAGRDG + C LY + + L+ S ++ ++ L+ Y
Sbjct: 390 YHQESGRAGRDGAKSFCYLYYSYGDAQKARSMLMDSAMKDNAPREVLDNNLGALNSLVSY 449
Query: 648 GMNTSCCRAKILVEYFGEDFSHEKC-QLCDVCV---DGPP-EMKNLKEEANILMQVIAAY 702
N CR +L+ +F E F +KC ++CD CV +G E++++ EA V++
Sbjct: 450 CENVCECRRTLLLGHFNETFDSQKCGRMCDACVAKHEGAVFEVRDVTREALGAADVVSGI 509
Query: 703 NEQSNSM 709
+ SM
Sbjct: 510 GGKGGSM 516
>gi|42524591|ref|NP_969971.1| ATP-dependent DNA helicase RecQ [Bdellovibrio bacteriovorus HD100]
gi|39576801|emb|CAE78030.1| ATP-dependent DNA helicase RecQ [Bdellovibrio bacteriovorus HD100]
Length = 530
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 131/214 (61%), Gaps = 15/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LKK+F S + QKE + + + D L + TG GKSLC+Q PA+ T K+V+VISPLI+
Sbjct: 17 LKKYFNLSGFRRGQKEIIESVMGGRDVLAVLPTGGGKSLCYQYPAVATQKLVIVISPLIA 76
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ + L ++G+ A L SGQ D+ +V + +G ++Y+ PE + + R
Sbjct: 77 LMKDQVASLRRYGIPAGALHSGQSDDDKREVFAEINKGGAFVLYLSPERAQK--EGFHRW 134
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
++R + LFAIDE HCVS+WGHDFR +Y +L+V LK L D+P++ALTA+AT
Sbjct: 135 VQNRTVGLFAIDEAHCVSQWGHDFREEYAQLNV---------LKKLCPDVPVLALTASAT 185
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
V +DI K L + K + V F+R NL + V+
Sbjct: 186 PTVLDDISKHLKLQKPERMV-HGFYRSNLYYQVE 218
Score = 99.0 bits (245), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 104/202 (51%), Gaps = 14/202 (6%)
Query: 504 SMLQEPLEDGLTIIYVPTRKETLSIAKYLCG-FGVKAAAYNASLPKSQLRRVHTEFHENK 562
S+ Q P +G I+Y TRK T SIA +L FG Y+A L + + +
Sbjct: 233 SIKQTP--EGRIIVYCGTRKVTESIAAFLQKKFGKSVGYYHAGLTSEVRTSTQEAYAKGE 290
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV-LYA----N 617
L ++VAT AFGMGID+ +VR ++H+ P +++A YQE GRAGRDG + C+ LY+
Sbjct: 291 LRILVATNAFGMGIDQPDVRLVVHFQIPANIDALYQEMGRAGRDGEHSTCLTLYSKKDKG 350
Query: 618 LSSMPTLLPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCD 676
L S + S + D+ K A +R L Y C A+IL Y+ + E+C CD
Sbjct: 351 LQSF--FIHSSEAPDEIKDARWRNLDALVNYSEGGECRHAEILT-YYKDSQRIERCGHCD 407
Query: 677 VCVDGPPEMKNLKEEANILMQV 698
C P + +++ L +V
Sbjct: 408 SC--DPKSARRIQKSVTPLAKV 427
>gi|395861752|ref|XP_003803142.1| PREDICTED: Bloom syndrome protein [Otolemur garnettii]
Length = 1389
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V VVISPL
Sbjct: 648 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLR 707
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 708 SLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLI 767
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 768 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 818
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 819 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 856
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 101/182 (55%), Gaps = 14/182 (7%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVV 567
P + G IIY +R+E ++A L G+ A AY+A L S+ V H +++ +V+
Sbjct: 877 PYDSG--IIYCLSRRECDTMAGTLRKDGLAALAYHAGLSDSERDEVQHKWINQDGCQVIC 934
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--- 624
AT+AFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L
Sbjct: 935 ATVAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEMSHCLLFYTYHDVTRLKRL 994
Query: 625 -LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL-----CD 676
+ + TK+ + L Y N + CR L+ YFGE+ F+ + C+ CD
Sbjct: 995 IMMEKDGNHHTKETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKYPDVSCD 1054
Query: 677 VC 678
C
Sbjct: 1055 NC 1056
>gi|417838967|ref|ZP_12485182.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M19107]
gi|341955862|gb|EGT82310.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M19107]
Length = 619
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 130/216 (60%), Gaps = 15/216 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK FG+ S + Q+E + A L D LV+ ATG+GKSLC+QIPAL + +VISPL
Sbjct: 18 SVLKSVFGYQSFRKGQEEVIHAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +G+ A FL S Q +V+ K + G ++YV PE V +
Sbjct: 78 ISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKV--MTNSFF 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L ++ AIDE HC+S+WGH+FRP+Y +L L+ +F P+MALTAT
Sbjct: 136 QLISYSKVSFIAIDEAHCISQWGHNFRPEYTQLGGLKASFP---------HAPIMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A R+DIL L++ K++ SF RPN+R++++
Sbjct: 187 ADYATRQDILTHLNLENPHKYI-GSFDRPNIRYTLE 221
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 143/280 (51%), Gaps = 27/280 (9%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L + IIY +R + IA+ L GV AAAY+A + + V +
Sbjct: 225 KPMEQLIRFVLAQKGKSGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAVRECVQQD 284
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F + ++VVVATIAFGMGI+K NVR + H+ P+S+E+YYQE GRAGRD A+ VL+
Sbjct: 285 FQSDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYE 344
Query: 616 -ANLSSMPTLL------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
A+ + + +L P R+ E +A ++ + CR +L+ YFGE
Sbjct: 345 PADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAE-------SQTCRRLVLLNYFGEH-R 396
Query: 669 HEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
C CD+C+D P + L + ++ + Q + G+ QK ++R
Sbjct: 397 QTPCNNCDICLDPPKKYDGLVDAQKVMSTIYRV--GQCFGAHYVIAVLRGMHNQKIIERQ 454
Query: 729 NLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ K+ V I +++S+++ W+ + R + + G++++
Sbjct: 455 HDKLSVYGIGKDKSKEH-------WQSVIRQLIHLGFVQQ 487
>gi|303286391|ref|XP_003062485.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456002|gb|EEH53304.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 491
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 129/228 (56%), Gaps = 24/228 (10%)
Query: 166 KKHFGHSSLKNFQKEALSAWL------AHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K+ FG+ + ++ Q S + A DC VL TG GKSLC+Q+PA++TG V VV
Sbjct: 6 KEVFGNEAFRSPQFSVASHAIRGGRGYAGRDCFVLMPTGGGKSLCYQLPAIITGGVTVVC 65
Query: 220 SPLISLMHDQCSKL-SKHGVTACFLGSGQPDNK-----VEQKALRGMYSIIYVCPETVIR 273
SPL+SL+ DQ L + V A +L S Q + E + + ++YV PE +
Sbjct: 66 SPLLSLIQDQVRHLVHDYDVPATYLSSAQTETDARAAFAELRKDKPTIRLLYVTPEKLAS 125
Query: 274 ---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
L L+ L +S +A F IDE HCVS WGHDFRPDY++L L++ F D
Sbjct: 126 SDALWTCLEALYDSGQLARFVIDEAHCVSSWGHDFRPDYKKLGALKKRFP---------D 176
Query: 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
P+MALTATAT+ VR D+LKSL +++ + +F RPN+ VKH K
Sbjct: 177 TPVMALTATATMTVRADVLKSLGIARTARCFTVTFNRPNISLIVKHKK 224
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 102/186 (54%), Gaps = 23/186 (12%)
Query: 516 IIYVPTRKETLSIA---------KYLCG--FGVKAAAYNASLPKSQLRRVHTEFHENKLE 564
I+Y +R ET ++A ++ G G AAAYNA +P+ + R+ + +
Sbjct: 247 IVYCLSRDETATLAAAINAERARRFKTGERPGPAAAAYNAGVPQKERTRIQNAWTAGDVR 306
Query: 565 VVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV-LYA------- 616
V ATIAFGMGIDK +VR ++HY P+SLE YQE GRAGRDG A+ V LYA
Sbjct: 307 VCCATIAFGMGIDKPDVRYVVHYSAPKSLEGLYQEIGRAGRDGKEAEAVTLYAASDITRL 366
Query: 617 -NLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL 674
+++MP RR+ D+ K++ +L + + +N CR L+ Y GED F +C +
Sbjct: 367 RRINAMPQPGGGRRA-DRIKKSEPLLREVEAFLLNRVDCRRARLMSYLGEDGFEARRCGV 425
Query: 675 -CDVCV 679
CD C
Sbjct: 426 TCDACA 431
>gi|392546619|ref|ZP_10293756.1| ATP-dependent DNA helicase [Pseudoalteromonas rubra ATCC 29570]
Length = 604
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 134/218 (61%), Gaps = 17/218 (7%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ +LK+ FG+S ++ Q + + A L D LVL TG GKSLC+Q+PAL+ VV+SP
Sbjct: 13 HGVLKEVFGYSDFRDGQLDVIQACLDGRDSLVLLPTGGGKSLCYQVPALILPGTCVVVSP 72
Query: 222 LISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LISLM DQ ++L G++A F+ + + Q+ +G ++YV PE +++ + +
Sbjct: 73 LISLMQDQVAQLQALGISAEFINNSLDRAQQQAIYQRLHQGEIKLLYVAPEKILQ-SEFI 131
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+RL+ + + LFAIDE HCVS WGHDFRP Y RL L+ F + +P+MALTA
Sbjct: 132 ERLSHLQ-LGLFAIDEAHCVSHWGHDFRPHYCRLHELKHRFAS---------VPMMALTA 181
Query: 339 TATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSVK 375
TA + R DI+ L + T F+ T SF RPN+R++++
Sbjct: 182 TADLATRSDIVTQLGLQ--TPFIHTGSFDRPNIRYTIE 217
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 5/170 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK IA+ L G AAAY+A + Q + V F + +++VVAT+AFGMG
Sbjct: 239 IVYCSSRKRVDDIAEKLVEAGFNAAAYHAGMSNEQRQFVQNAFARDDIQIVVATVAFGMG 298
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
I+K NVR ++HY P+S+EAYYQE GRAGRDG A+ ++Y A++ + E
Sbjct: 299 INKSNVRYVLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVKRFFEDIEDEH 358
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
+ + + S + + CR +IL+ YF E + E C CD+C++ P
Sbjct: 359 RRRVEEQRFSSMASFA-SAQTCRRQILLNYFSE-YQREPCGNCDICLNPP 406
>gi|449532449|ref|XP_004173193.1| PREDICTED: Werner syndrome ATP-dependent helicase-like, partial
[Cucumis sativus]
Length = 173
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 114/181 (62%), Gaps = 9/181 (4%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ ++LK++FG S+L+ +QKE + + L DCLV+ TGSGKSLC+Q+P L+ GK +V+S
Sbjct: 1 MEAILKRYFGFSALRPYQKEVIQSILRGKDCLVVTGTGSGKSLCYQVPPLVVGKTGIVVS 60
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
PLISLM DQ L + G+ + +LGS Q D+ V+ A G YSI+++ PE L
Sbjct: 61 PLISLMQDQVMALKQRGIKSEYLGSTQADSTVQANAESGQYSILFMTPEKACSLPMSFWS 120
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
+ GI LFA+DE HC+S WGH+FR +Y L +N + + +P +ALTATA
Sbjct: 121 KLKKAGICLFAVDEAHCISDWGHNFRAEYELL---------DNFRDILPGLPFVALTATA 171
Query: 341 T 341
+
Sbjct: 172 S 172
>gi|261415059|ref|YP_003248742.1| ATP-dependent DNA helicase RecQ [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385790017|ref|YP_005821140.1| ATP-dependent DNA helicase RecQ [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371515|gb|ACX74260.1| ATP-dependent DNA helicase RecQ [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302326372|gb|ADL25573.1| ATP-dependent DNA helicase RecQ [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 614
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 131/221 (59%), Gaps = 16/221 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK FG+ + + Q+E + ++ D LVL TG GKS+C+QIPAL+ + VVISPLI
Sbjct: 7 ILKSVFGYDAFRPMQEEIIEHVVSGKDALVLMPTGGGKSICYQIPALMFKGITVVISPLI 66
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ L+ +G+ A L S + + + Q+ G I+Y+ PE RL + +
Sbjct: 67 SLMKDQVDALNANGIGADALNSNNEEGENAAIRQRCKAGQTKILYISPE---RLQREIPW 123
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L + I+LFAIDE HC+S+WGHDFRP+Y +L +L + F + +MALTATA
Sbjct: 124 LQQHLSISLFAIDEAHCISQWGHDFRPEYTQLGMLHQAFPS---------ATIMALTATA 174
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
+EDI++ L++ FV +SF RPNL V+ ++S
Sbjct: 175 DKLTKEDIVRQLNLRDFRLFV-SSFDRPNLSLDVRRGYSAS 214
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 100/182 (54%), Gaps = 7/182 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK T +A+ L GV A AY+A L + V +F + + VV ATIAFGMG
Sbjct: 233 IIYCLSRKSTEKVAEELINAGVYAKAYHAGLTAEERNNVQEDFINDNINVVCATIAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK NVR +IHY P+S+E++YQE GRAGRDG ++ VL+ N + TL Q
Sbjct: 293 IDKSNVRYVIHYNLPKSIESFYQEIGRAGRDGLPSETVLFYNFQDIITLRKFVNDSGQRD 352
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANIL 695
L Y + CR +IL+ YFGE+ S C CD+C PP+ N IL
Sbjct: 353 INSEKLDRMQEYA-ESQVCRRRILLNYFGENNS-SNCGNCDIC-KHPPQRFN----GTIL 405
Query: 696 MQ 697
+Q
Sbjct: 406 VQ 407
>gi|443467985|ref|ZP_21058238.1| ATP-dependent DNA helicase RecQ [Pseudomonas pseudoalcaligenes
KF707]
gi|442897016|gb|ELS24067.1| ATP-dependent DNA helicase RecQ [Pseudomonas pseudoalcaligenes
KF707]
Length = 708
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 131/220 (59%), Gaps = 19/220 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ + + Q + + D LVL TG GKSLC+Q+PALL + VV+
Sbjct: 4 QAQRILKDVFGYDAFRGNQAAIIERVASGGDALVLMPTGGGKSLCYQVPALLRDGLTVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVI--RL 274
SPLI+LM DQ + L + GV A L S + ++ + +G ++Y+ PE ++ R+
Sbjct: 64 SPLIALMDDQVATLDELGVPAVALNSTLSAEAQREIADRLRQGEIKLLYLAPERLVQPRM 123
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ LQRL I LFAIDE HCVS+WGHDFRP+Y +L L E F ++P M
Sbjct: 124 LAFLQRLP----IGLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFP---------NVPRM 170
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA ++ RE++++ LH+ +F L+SF RPN+ + +
Sbjct: 171 ALTATADMRTREEMVQRLHLQNAERF-LSSFDRPNIFYRI 209
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
I+Y +RK+ +A +L G A Y+A L + LR H + F + ++VATIAFGM
Sbjct: 232 IVYCLSRKKVEEVASFLSEQGFPALPYHAGL-ANDLRAYHQKRFLNEEGLIMVATIAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT 634
GIDK NVR + H P+SLEAYYQE GRAGRDG AD + L + LL S +
Sbjct: 291 GIDKPNVRFVAHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDV-LLLKQMLSNSEG 349
Query: 635 KQAYRMLSDCFRYGMNTSC----CRAKILVEYFGEDFSHEKCQLCDVCVDG 681
+ ++ + M + C CR + L+ YF E+ + C CD+C DG
Sbjct: 350 DERHKRIEQHKLDAMLSLCEETRCRRQTLLAYFDEELP-QPCGHCDICTDG 399
>gi|195571657|ref|XP_002103819.1| GD20640 [Drosophila simulans]
gi|194199746|gb|EDX13322.1| GD20640 [Drosophila simulans]
Length = 1473
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 127/214 (59%), Gaps = 18/214 (8%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG S + Q + ++A L +DC VL TG GKSLC+Q+PA+LT V +VISPL SL+ D
Sbjct: 747 FGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFD 806
Query: 229 QCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETV---IRLIKPLQR 280
Q +KL+ + A L Q V + ++ M ++YV PE + R L
Sbjct: 807 QINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQDTLDT 866
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L + I+ F IDE HCVS+WGHDFRPDY++L VL++ F ++P +ALTATA
Sbjct: 867 LNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFP---------NVPTIALTATA 917
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
T +VR DIL L++ K K+ L+SF R NLR+ V
Sbjct: 918 TPRVRLDILAQLNL-KNCKWFLSSFNRSNLRYRV 950
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 86/179 (48%), Gaps = 47/179 (26%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RKE +K +C G++A +Y+A L
Sbjct: 976 IIYCLSRKECDETSKKMCKDGIRAVSYHAGL----------------------------- 1006
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM---PTLLPSRRS-- 630
D +VR ++HY P+S+E YYQEAGRAGRDG +ADC+LY N S M +L S ++
Sbjct: 1007 TDTEHVRFVLHYSLPKSIEGYYQEAGRAGRDGDMADCILYYNYSDMLRIKKMLDSDKALQ 1066
Query: 631 ----EDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-----QLCDVCVD 680
+ YR++ C N + CR ++YFGE F+ E+C CD C++
Sbjct: 1067 YNVKKIHVDNLYRIVGYC----ENLTDCRRAQQLDYFGEHFTSEQCLENRETACDNCIN 1121
>gi|296136620|ref|YP_003643862.1| ATP-dependent DNA helicase RecQ [Thiomonas intermedia K12]
gi|295796742|gb|ADG31532.1| ATP-dependent DNA helicase RecQ [Thiomonas intermedia K12]
Length = 617
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 133/213 (62%), Gaps = 16/213 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+ +G+ + ++ Q +A+ +A D LVL TG GKSLCFQIPALL + +V+SPLI+
Sbjct: 12 LQHVWGYPAFRSLQAQAIDHVVAGRDALVLMPTGGGKSLCFQIPALLREGMGIVVSPLIA 71
Query: 225 LMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ + L + G+ A FL S V++ A +G ++Y+ PE + L + Q L
Sbjct: 72 LMQDQVAALRELGLRAAFLNSTLDATEARAVQRAARQGELDLLYMAPERL--LSESGQAL 129
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+ IALFAIDE HCVS+WGHDFRP+Y +LS+LRE + ++P +ALTATA
Sbjct: 130 LDDLRIALFAIDEAHCVSQWGHDFRPEYGQLSLLRERWP---------EVPRVALTATAD 180
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
R +I++ L + G +FV +SF RPN+R+ V
Sbjct: 181 EPTRHEIVQRL-LHDGAEFV-SSFDRPNIRYRV 211
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 100/191 (52%), Gaps = 14/191 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
++Y +R +A+ L G G++A Y+A LP + R H F + V+VATIAFGM
Sbjct: 235 VVYALSRNTVEEVAEMLAGHGLRALPYHAGLPAAT-RAAHLRRFLDEDGIVMVATIAFGM 293
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSED-- 632
GIDK +VR + H P+S+E Y+QE GRAGRDG A + L+ + + RR D
Sbjct: 294 GIDKPDVRFVAHLDMPKSIEGYFQETGRAGRDGLPATAWMAYGLADV---VQQRRLIDLS 350
Query: 633 QTKQAYRMLS----DCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
AY+ LS D + CR L+ YFGE + C CD C++ PP++ +
Sbjct: 351 DADDAYKRLSTAKLDAMLALAEAADCRRVRLLGYFGE--ASAPCGNCDNCLN-PPQLIDA 407
Query: 689 KEEANILMQVI 699
E A L+ I
Sbjct: 408 TEAAQKLLSTI 418
>gi|406898586|gb|EKD42127.1| hypothetical protein ACD_73C00318G0003, partial [uncultured
bacterium]
Length = 260
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 135/241 (56%), Gaps = 23/241 (9%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+LK FG + Q++ +S + +D LVL TGSGKSLC+QIPA++ +++SP
Sbjct: 5 QQILKLVFGFDQFRGEQEKIISHVIQGNDALVLMPTGSGKSLCYQIPAIVRPGTAIIVSP 64
Query: 222 LISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM +Q S L GV A FL S Q +VE RG ++YV PE + L +
Sbjct: 65 LIALMQNQVSALKVMGVKAAFLNSSLDAQQMREVETHLRRGQLDLLYVAPERL--LTENF 122
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L +ALFAIDE HCVS+WGHDFRP+Y +L +L E F +P +ALTA
Sbjct: 123 LDLISQIPLALFAIDEAHCVSQWGHDFRPEYLKLKILHERFPT---------VPRIALTA 173
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTK 398
TA +++I + L + K F LTSF RPN+R+ V +T+ KD QLID
Sbjct: 174 TADRVTQKEISEKLALQKARTF-LTSFDRPNIRYEVVLKQTA------KD--QLIDFIQS 224
Query: 399 K 399
K
Sbjct: 225 K 225
>gi|24646066|ref|NP_524319.2| bloom syndrome helicase ortholog [Drosophila melanogaster]
gi|17366114|sp|Q9VGI8.1|BLM_DROME RecName: Full=Bloom syndrome protein homolog; Short=Dmblm; AltName:
Full=Mutagen-sensitive protein 309; AltName: Full=RecQ
helicase homolog
gi|7299503|gb|AAF54691.1| bloom syndrome helicase ortholog [Drosophila melanogaster]
Length = 1487
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 127/214 (59%), Gaps = 18/214 (8%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG S + Q + ++A L +DC VL TG GKSLC+Q+PA+LT V +VISPL SL+ D
Sbjct: 733 FGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFD 792
Query: 229 QCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETV---IRLIKPLQR 280
Q +KL+ + A L Q V + ++ M ++YV PE + R L
Sbjct: 793 QINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQDTLDT 852
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L + I+ F IDE HCVS+WGHDFRPDY++L VL++ F ++P +ALTATA
Sbjct: 853 LNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFP---------NVPTIALTATA 903
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
T +VR DIL L++ K K+ L+SF R NLR+ V
Sbjct: 904 TPRVRLDILAQLNL-KNCKWFLSSFNRSNLRYRV 936
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 103/179 (57%), Gaps = 18/179 (10%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RKE +K +C GV+A +Y+A L + ++ K+ V+ AT+AFGMG
Sbjct: 962 IIYCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMG 1021
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM---PTLLPSRRS-- 630
IDK +VR ++HY P+S+E YYQEAGRAGRDG +ADC+LY N S M +L S ++
Sbjct: 1022 IDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDKALQ 1081
Query: 631 ----EDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-----QLCDVCVD 680
+ YR++ C N + CR ++YFGE F+ E+C CD C++
Sbjct: 1082 YNVKKIHVDNLYRIVGYC----ENLTDCRRAQQLDYFGEHFTSEQCLENRETACDNCIN 1136
>gi|336317637|ref|ZP_08572488.1| ATP-dependent DNA helicase RecQ [Rheinheimera sp. A13L]
gi|335877984|gb|EGM75932.1| ATP-dependent DNA helicase RecQ [Rheinheimera sp. A13L]
Length = 599
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 133/216 (61%), Gaps = 19/216 (8%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK+ FG+S ++ Q E + A L+ D VL TG GKSLC+Q+PAL+ V VV+SPL+S
Sbjct: 9 LKQAFGYSQFRHGQLEVIQACLSGQDTFVLMPTGGGKSLCYQLPALMLPYVTVVVSPLMS 68
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQ--KALRG-MYSIIYVCPETVIRLIKP--LQ 279
LM DQ L +G+ A F+ S Q +++ + LR ++Y+ PE RL++ +
Sbjct: 69 LMKDQVDALQANGIAAEFINSSQSREEIQDVIRRLRNQQLKLLYLAPE---RLLQADFMS 125
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
RLAE G++LFAIDE HC+S+WGHDFRP Y L+ L+ F +P+MALTAT
Sbjct: 126 RLAEV-GVSLFAIDEAHCISQWGHDFRPHYTELAQLKHYFP---------HVPMMALTAT 175
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A ++DI + L++ + + SF RPN+R++V+
Sbjct: 176 ADPATQKDISRQLNLQQ-PYISVGSFDRPNIRYTVQ 210
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 151/289 (52%), Gaps = 21/289 (7%)
Query: 489 SFERTDLLNKPAERLSMLQEPL------EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ E+ L++ + E IIY +R++ + + L G G + AAY
Sbjct: 199 SFDRPNIRYTVQEKFRPLEQVVNYLKLQEQQSGIIYCASRRKVDELTEQLAGKGFQVAAY 258
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L Q V F ++++++++AT+AFGMG++K N+R +IH+ P+++EAYYQE GR
Sbjct: 259 HAGLTNEQRNSVQEAFKKDQIQLIIATVAFGMGVNKSNIRFVIHFELPRTIEAYYQETGR 318
Query: 603 AGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A+ ++ A+++ M + + + +T+ A + + + CR +L
Sbjct: 319 AGRDGVPAEALMLVDPADIARMRSWIEKDENNSRTEVALQRFNQMAAFA-QAQTCRRLVL 377
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGI 719
+ YFGE S + C CD+C+D PP+ + E A + + N QS M+ + G
Sbjct: 378 LNYFGES-SQKPCGNCDICID-PPKQFDATELARKALSCVYRVN-QSFGMNHVIDVLRGS 434
Query: 720 KKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
+ + + + K+ I ++QS Y W + R + + G +++
Sbjct: 435 QTSRIHELGHDKLSTYAIGKDQSHDY-------WLSILRQLVHCGLLQQ 476
>gi|402471219|gb|EJW05076.1| RecQ family ATP-dependent DNA helicase [Edhazardia aedis USNM 41457]
Length = 1768
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 126/222 (56%), Gaps = 24/222 (10%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ F + ++ QKE + A L+H D VL TG GKS+CFQ+PA++T + +V+SPL+
Sbjct: 1059 VLRHVFKLQNFRSQQKEVIEAALSHDDVFVLMPTGGGKSICFQLPAIITDGITLVVSPLL 1118
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII----------YVCPETVIR 273
SL+ DQ L K + A + S ++ + R ++ I+ YV PE ++
Sbjct: 1119 SLIQDQIKNLLKKNIIALAISS-----QLTETERRFVFEILKQPDPICKIFYVTPELIVN 1173
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
Q + +A IDE HCVS+WGHDFRPDY+R+ + E+ + IPL
Sbjct: 1174 S-SLFQDIIRKTKVARIVIDEAHCVSQWGHDFRPDYKRVGTVIEDL-------FEHKIPL 1225
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
MALTATA+ +VREDI+ +L M + K SF RPNL + V+
Sbjct: 1226 MALTATASPRVREDIINALRM-RNIKIFAMSFNRPNLVYFVR 1266
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 103/184 (55%), Gaps = 4/184 (2%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIA-KYLCGFGVKAAAYNASLPKSQLRRVHTEF 558
E +S + + IIY ++K+ I+ +Y +G+K Y+A L K++ +
Sbjct: 1275 TEIVSFISTHYPESSGIIYCLSQKDCEMISERYNDKYGLKTRFYHAGLSKNERIETQNAW 1334
Query: 559 HENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL 618
+ENK ++VATIAFGMGIDK +VR +IHY P+SLE YYQE GRAGRDG + C+L+ +
Sbjct: 1335 NENKFLIIVATIAFGMGIDKKDVRFVIHYSLPKSLEGYYQETGRAGRDGLNSTCILFYSF 1394
Query: 619 SSMPTL--LPSRRSEDQTKQAYRM-LSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLC 675
L + K+ R+ L Y NTS CR I++++ GE F+ E + C
Sbjct: 1395 KDKKILEFMIDHSKTGSNKKLQRLELQKVIDYCENTSMCRRDIVLKHLGEHFTGECNKTC 1454
Query: 676 DVCV 679
D C+
Sbjct: 1455 DNCM 1458
>gi|323452152|gb|EGB08027.1| hypothetical protein AURANDRAFT_26856 [Aureococcus anophagefferens]
Length = 382
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 125/220 (56%), Gaps = 15/220 (6%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK-VVVVI 219
+ + LK+ +G+ + Q+ A++A DC V ATGSGKS+ +Q+ AL + VV+VI
Sbjct: 41 LRATLKETWGYDDFREGQEAAVAAVCGGRDCAVYWATGSGKSIVYQLAALHRARGVVLVI 100
Query: 220 SPLISLMHDQCSKLSKHGV--TACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIR--LI 275
SPL+SLM DQ L+ ACFLGS Q D VE +ALRG Y ++Y PE L
Sbjct: 101 SPLVSLMMDQVKTLNMTCGRDVACFLGSAQTDRSVEDRALRGDYRLVYATPEKTANQDLA 160
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L R G+AL A+DE HCVS+WGHDFRP+YRRL +R+ PL+A
Sbjct: 161 GALDRNCPG-GLALIAVDEAHCVSEWGHDFRPEYRRLGSVRDACPGT---------PLVA 210
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
LTATA +VR DI +L + G +F RPNL K
Sbjct: 211 LTATAAPRVRGDIESNLRLRPGFHVAAKTFDRPNLALRCK 250
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 78/138 (56%), Gaps = 11/138 (7%)
Query: 488 RSFERTDLLNK--------PAERLSMLQEPLEDG-LTIIYVPTRKETLSIAKYLCGF--G 536
++F+R +L + PA L E L DG TI+Y TR E + L
Sbjct: 238 KTFDRPNLALRCKRLAGEGPAAALKSTAEALRDGGATIVYCSTRGEVETATAALNALDPA 297
Query: 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAY 596
K A Y+A +P R H F KL VVAT+AFGMGIDK ++RR++HY P+S+E Y
Sbjct: 298 AKVAGYHAGMPPGDRRDAHYGFLSGKLHCVVATVAFGMGIDKPDIRRVVHYSPPKSMEEY 357
Query: 597 YQEAGRAGRDGHLADCVL 614
YQ+ GRAGRDG A+C+L
Sbjct: 358 YQQVGRAGRDGLPAECLL 375
>gi|421166499|ref|ZP_15624752.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa ATCC
700888]
gi|404538172|gb|EKA47723.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa ATCC
700888]
Length = 712
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 130/216 (60%), Gaps = 19/216 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK FG+ + + Q + D LVL TG GKSLCFQ+PALL + VV+SPLI
Sbjct: 8 ILKDVFGYDAFRGNQARIIERVAEGGDALVLMPTGGGKSLCFQVPALLREGLTVVVSPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGSG-QPDNK--VEQKALRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ + L + GV A L S P+ + + ++ RG ++Y+ PE ++ R++ L
Sbjct: 68 ALMEDQVATLDELGVPAVALNSTLNPEQQRDIAERLQRGEIKLLYLAPERLVQPRMLAFL 127
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
QRL + LFAIDE HCVS+WGHDFRP+Y +L L E F +P +ALTA
Sbjct: 128 QRLP----VGLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFP---------QVPRIALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA ++ RE++++ LH+ +F L+SF RPN+ + +
Sbjct: 175 TADMRTREEMIQRLHLQNAEQF-LSSFDRPNIFYRI 209
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 98/175 (56%), Gaps = 16/175 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
I+Y +RK+ +A++L G A Y+A L ++LR H + F + ++VATIAFGM
Sbjct: 232 IVYCLSRKKVEEVAEFLGNQGFPALPYHAGL-SNELRAHHQKRFLNEEGLIMVATIAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSE 631
GIDK NVR + H P+SLEAYYQE GRAGRDG AD + L + L + S +
Sbjct: 291 GIDKPNVRFVAHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVLLLRQMMQSSEGD 350
Query: 632 DQTKQAYR-----MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
++ K+ R ML+ C + CR + L+ YF E+ + C CD CVDG
Sbjct: 351 ERHKRVERHKLEAMLALC-----EETRCRRQALLAYFDEEMP-QPCGHCDNCVDG 399
>gi|254491083|ref|ZP_05104264.1| ATP-dependent DNA helicase RecQ [Methylophaga thiooxidans DMS010]
gi|224463596|gb|EEF79864.1| ATP-dependent DNA helicase RecQ [Methylophaga thiooxydans DMS010]
Length = 708
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 140/234 (59%), Gaps = 21/234 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++L+ FG+ + ++ Q+ + ++ D LVL TG GKSLC+QIPAL+ VV+SPL
Sbjct: 10 NVLQSIFGYDAFRHNQQAIVEHVISGGDALVLMPTGGGKSLCYQIPALVRSGTAVVVSPL 69
Query: 223 ISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVI--RLIKP 277
I+LM DQ L + GV A FL S VEQ+ G ++YV PE ++ R++
Sbjct: 70 IALMQDQVMALKQLGVKAAFLNSSLSAAQARDVEQQLEAGQIDLLYVAPERLLGERMLSF 129
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L+RL +ALFAIDE HCVS+WGHDFRP+Y++L +L E F + +P +ALT
Sbjct: 130 LERLP----VALFAIDEAHCVSQWGHDFRPEYQQLRILHERFPS---------VPRIALT 176
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQ 391
ATA + R +I++ L + +G + L SF R N+ +++ ++ + + + DF Q
Sbjct: 177 ATADKRTRIEIIEQLKL-QGAEVYLNSFDRHNIFYAIAEARQAKQQLW--DFIQ 227
Score = 105 bits (263), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE--FHENKLEVVVATIAFG 573
I+Y +RK+ + A++L G A Y+A LP R HT+ F + ++VATIAFG
Sbjct: 236 IVYCLSRKKVEATAQWLSEQGRIALPYHAGLPAE--LRAHTQQRFLREEGIIIVATIAFG 293
Query: 574 MGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQ 633
MGIDK +VR + H P+++EAYYQE GRAGRDG A+ + L + TL R Q
Sbjct: 294 MGIDKPDVRFVAHLNLPKNIEAYYQETGRAGRDGLPANAWMAYGLQDVITL----RQFMQ 349
Query: 634 TKQAYRMLSDCFRYGMNTS-------CCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMK 686
QA ++ + + CR L+ YF ED + EKC CD CV+ PPE
Sbjct: 350 DSQAPELIKRVEHHKLEAMLGLCELITCRRHALLAYFDED-APEKCGHCDNCVN-PPENF 407
Query: 687 NLKEEAN 693
+ E A
Sbjct: 408 DATEVAQ 414
>gi|295133000|ref|YP_003583676.1| ATP-dependent DNA helicase RecQ [Zunongwangia profunda SM-A87]
gi|294981015|gb|ADF51480.1| ATP-dependent DNA helicase RecQ [Zunongwangia profunda SM-A87]
Length = 731
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 136/225 (60%), Gaps = 19/225 (8%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
E+ ++ LKK+FG S K Q++ +++ + +D V+ TG GKSLC+Q+PAL+ +
Sbjct: 5 EIDLHKQLKKYFGFSQFKGLQEDVVASIVHKNDTFVIMPTGGGKSLCYQLPALIEEGTAI 64
Query: 218 VISPLISLMHDQCSKL----SKHGVTACFLGSGQPDNKVEQ---KALRGMYSIIYVCPET 270
V+SPLI+LM +Q + S++GV A L S +V+Q + G+ ++YV PE+
Sbjct: 65 VVSPLIALMKNQVDAIRGISSEYGV-AHVLNSSLNKTEVKQVKEDIINGVTKLLYVAPES 123
Query: 271 VIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
+ + + + + I+ AIDE HC+S+WGHDFRP+YR L + + G N
Sbjct: 124 LTK--EDYVDFLKEQKISFLAIDEAHCISEWGHDFRPEYRNLRQIIKRIGEN-------- 173
Query: 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
IP++ALTATAT +V+EDILK+L + K F SF RPNL + V+
Sbjct: 174 IPIIALTATATPKVQEDILKNLGIPKAKTFK-ASFNRPNLYYEVR 217
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 103/189 (54%), Gaps = 7/189 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ +A+ L G+ A Y+A L + F +++VVVATIAFGMG
Sbjct: 240 IIYCLSRKKVEELAQTLQVNGINAIPYHAGLDAKTRSKHQDMFLMEEVDVVVATIAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV---LYANLSSMPTLLPSRRSED 632
IDK +VR +IH+ P+S+E+YYQE GRAGRDG C+ Y ++ + + + +
Sbjct: 300 IDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYAYKDIEKLEKFMSGKPVAE 359
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLC--DVCVDGPPEMKNLKE 690
Q + + +L + Y TS R K ++ YFGE+F + D V P + KE
Sbjct: 360 Q-EVGHALLQEVVAYA-ETSISRRKFILHYFGEEFDEKTGDGASMDDNVRNPKKQHEAKE 417
Query: 691 EANILMQVI 699
E +L++VI
Sbjct: 418 ELELLIKVI 426
>gi|356532786|ref|XP_003534951.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Glycine max]
Length = 732
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 131/220 (59%), Gaps = 17/220 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LL+ HFG+ ++ Q +A+ A L+ DC L TG GKS+C+QIPAL +V+V+ PLI
Sbjct: 29 LLRWHFGYPDFRDMQLDAIQAVLSGKDCFCLMPTGGGKSMCYQIPALAKAGIVLVVCPLI 88
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYS--IIYVCPETVIR--LIK 276
+LM +Q L + G+ A FL S + + K+ + G S ++YV PE + +
Sbjct: 89 ALMENQVMALKEKGIAAEFLSSTKTTDAKVKIHEDLDSGKPSTRLLYVTPELITTPGFMT 148
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L ++ + L AIDE HC+S WGHDFRP YR+LS LR + D+P++AL
Sbjct: 149 KLTKIYTRGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRSHLP---------DVPILAL 199
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
TATA +V++D+++SL M + + +SF RPN+ + V++
Sbjct: 200 TATAVPKVQKDVVESLQM-QNPLMLKSSFNRPNIYYEVRY 238
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 95/202 (47%), Gaps = 27/202 (13%)
Query: 494 DLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR 553
DLL+ LS + L D I+Y R ++ L G+ AAY+A L
Sbjct: 240 DLLDDAYADLSNTLKSLGDVCAIVYCLERSMCDDLSTNLSQNGISCAAYHAGLNNKMRTS 299
Query: 554 VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV 613
V ++ +K++VVVAT+AFG +VR + H+ P+S+EA+YQE+GRAGRD + +
Sbjct: 300 VLDDWISSKIKVVVATVAFGK-----DVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRSL 354
Query: 614 LYANLSS---MPTLLPSRRSEDQTKQ------------AYRMLSD-CFRYGMNTSCCRAK 657
LY + M +L S+ A+ ++ + C G CR K
Sbjct: 355 LYYGVDDRKRMEFILRKSVSKKSQSSSSQEESSKMSLIAFNLMVEYCEGSG-----CRRK 409
Query: 658 ILVEYFGEDFSHEKC-QLCDVC 678
++E FGE + C + CD C
Sbjct: 410 RVLESFGEQVTASLCGKTCDGC 431
>gi|421596626|ref|ZP_16040405.1| ATP-dependent DNA helicase RecQ, partial [Bradyrhizobium sp.
CCGE-LA001]
gi|404271264|gb|EJZ35165.1| ATP-dependent DNA helicase RecQ, partial [Bradyrhizobium sp.
CCGE-LA001]
Length = 331
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 140/234 (59%), Gaps = 21/234 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+L FG + Q E + +CLVL TG GKSLC+Q+P+LL +V+SPL
Sbjct: 20 SVLHSVFGLPGFRGAQGEIVRHVTDGGNCLVLMPTGGGKSLCYQLPSLLREGCGIVVSPL 79
Query: 223 ISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKP-- 277
I+LM DQ + L + GV A L S Q ++VE++ + G ++YV PE RL+ P
Sbjct: 80 IALMRDQVAGLLEAGVNAAALNSSLSPQEASEVERRLIAGDLDLLYVAPE---RLVTPRC 136
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L LA++R +ALFAIDE HCVS+WGHDFRP+Y LS++ E F ++P +ALT
Sbjct: 137 LSMLAQAR-VALFAIDEAHCVSQWGHDFRPEYVGLSIIAERFP---------EVPRIALT 186
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQ 391
ATA R++I++ L ++ +FV +SF RPN+R+ + + + S K+F +
Sbjct: 187 ATADELTRKEIVERLQLTGAPQFV-SSFDRPNIRYEIVDKRNA--VSQLKEFIR 237
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 48/86 (55%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
++Y +R +A L G+ A Y+A L S R F V+VATIAFGMG
Sbjct: 246 VVYCLSRNRVEEVAAALQDAGIAALPYHAGLDGSVRSRNQDRFLNEDGIVIVATIAFGMG 305
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAG 601
IDK +VR + H P+S+EAYYQE G
Sbjct: 306 IDKPDVRFVAHLDLPKSIEAYYQETG 331
>gi|114327543|ref|YP_744700.1| ATP-dependent DNA helicase RecQ [Granulibacter bethesdensis
CGDNIH1]
gi|114315717|gb|ABI61777.1| ATP-dependent DNA helicase recQ [Granulibacter bethesdensis
CGDNIH1]
Length = 629
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 137/237 (57%), Gaps = 18/237 (7%)
Query: 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTG 213
G E +L++ FG+ + + Q++A++ + D LVL TG GKSLC+Q+PAL
Sbjct: 13 GRSQENPALDVLRRVFGYPAFRGLQEDAIAHVIEGGDALVLMPTGGGKSLCYQVPALCRD 72
Query: 214 KVVVVISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPET 270
+ +V+SPLI+LM DQ + L + G+ A L S V + A+ ++YV PE
Sbjct: 73 GMAIVVSPLIALMDDQVAALRQLGINAAALHSELEADQGRAVFRAAMDARLDLLYVSPER 132
Query: 271 VIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
++ + + RL ESR IAL AIDE HCVS+WGH+FRP+YR L+ L E F
Sbjct: 133 LLNGL--MDRLPESR-IALIAIDEAHCVSQWGHEFRPEYRALARLPERFPG--------- 180
Query: 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY 385
+P +ALTATA + R+DIL++L M + SF RPNLR + K ++TS ++
Sbjct: 181 VPRIALTATADARTRDDILRALGMEHARVYA-ASFHRPNLRIAAAEKIAETSQMMAF 236
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 110/220 (50%), Gaps = 11/220 (5%)
Query: 489 SFERTDLLNKPAERLSMLQEPL------EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF R +L AE+++ + + D IIY +R +T A+ L G+ A Y
Sbjct: 213 SFHRPNLRIAAAEKIAETSQMMAFLARHRDQAGIIYCGSRAKTERTAQRLREKGIDAITY 272
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A LP S+ + T F + V+VATIAFGMGID+ +VR ++H P S E+YYQ+ GR
Sbjct: 273 HAGLPPSEKQVALTRFRGGESVVMVATIAFGMGIDRPDVRFVVHLDMPDSPESYYQQIGR 332
Query: 603 AGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG ++ +L +++ L + D K+ R D + CR + L
Sbjct: 333 AGRDGEESETLLLYGGEDIARARHFLSISVAPDSQKRVMRQRLDAMIGLAEAADCRTRAL 392
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
+ FGE + C CD+C PPE + EA ++ +
Sbjct: 393 LSCFGESME-QPCGHCDLCA-APPETFDGSVEAQKVLSAV 430
>gi|15598540|ref|NP_252034.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa PAO1]
gi|107102876|ref|ZP_01366794.1| hypothetical protein PaerPA_01003944 [Pseudomonas aeruginosa PACS2]
gi|116051359|ref|YP_789808.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa UCBPP-PA14]
gi|218890460|ref|YP_002439324.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa LESB58]
gi|254236306|ref|ZP_04929629.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa C3719]
gi|254242031|ref|ZP_04935353.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa 2192]
gi|313108694|ref|ZP_07794690.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa 39016]
gi|355640536|ref|ZP_09051793.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. 2_1_26]
gi|386057688|ref|YP_005974210.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa M18]
gi|386067380|ref|YP_005982684.1| ATP-dependent DNA helicase [Pseudomonas aeruginosa NCGM2.S1]
gi|392982918|ref|YP_006481505.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa DK2]
gi|416854979|ref|ZP_11911253.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa 138244]
gi|416873649|ref|ZP_11917645.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa 152504]
gi|418584708|ref|ZP_13148766.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa MPAO1/P1]
gi|418589750|ref|ZP_13153670.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa MPAO1/P2]
gi|419755049|ref|ZP_14281407.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa
PADK2_CF510]
gi|420138800|ref|ZP_14646681.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa CIG1]
gi|421159224|ref|ZP_15618385.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa ATCC 25324]
gi|421173433|ref|ZP_15631180.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa CI27]
gi|421179493|ref|ZP_15637081.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa E2]
gi|421517882|ref|ZP_15964556.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa PAO579]
gi|424942725|ref|ZP_18358488.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa NCMG1179]
gi|451986036|ref|ZP_21934231.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa 18A]
gi|9949477|gb|AAG06732.1|AE004757_1 ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa PAO1]
gi|115586580|gb|ABJ12595.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa UCBPP-PA14]
gi|126168237|gb|EAZ53748.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa C3719]
gi|126195409|gb|EAZ59472.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa 2192]
gi|218770683|emb|CAW26448.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa LESB58]
gi|310881192|gb|EFQ39786.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa 39016]
gi|334843474|gb|EGM22063.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa 138244]
gi|334844559|gb|EGM23132.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa 152504]
gi|346059171|dbj|GAA19054.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa NCMG1179]
gi|347303994|gb|AEO74108.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa M18]
gi|348035939|dbj|BAK91299.1| ATP-dependent DNA helicase [Pseudomonas aeruginosa NCGM2.S1]
gi|354831286|gb|EHF15307.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. 2_1_26]
gi|375045415|gb|EHS37998.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa MPAO1/P1]
gi|375051408|gb|EHS43876.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa MPAO1/P2]
gi|384398867|gb|EIE45272.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa
PADK2_CF510]
gi|392318423|gb|AFM63803.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa DK2]
gi|403248423|gb|EJY61998.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa CIG1]
gi|404347364|gb|EJZ73713.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa PAO579]
gi|404535848|gb|EKA45511.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa CI27]
gi|404547053|gb|EKA56074.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa E2]
gi|404548068|gb|EKA57041.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa ATCC 25324]
gi|451756316|emb|CCQ86754.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa 18A]
gi|453047631|gb|EME95345.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa PA21_ST175]
Length = 712
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 130/216 (60%), Gaps = 19/216 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK FG+ + + Q + D LVL TG GKSLCFQ+PALL + VV+SPLI
Sbjct: 8 ILKDVFGYDAFRGNQARIIERVAEGGDALVLMPTGGGKSLCFQVPALLREGLTVVVSPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGSG-QPDNK--VEQKALRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ + L + GV A L S P+ + + ++ RG ++Y+ PE ++ R++ L
Sbjct: 68 ALMEDQVATLDELGVPAVALNSTLNPEQQRDIAERLQRGEIKLLYLAPERLVQPRMLAFL 127
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
QRL + LFAIDE HCVS+WGHDFRP+Y +L L E F +P +ALTA
Sbjct: 128 QRLP----VGLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFP---------QVPRIALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA ++ RE++++ LH+ +F L+SF RPN+ + +
Sbjct: 175 TADMRTREEMIQRLHLQNAEQF-LSSFDRPNIFYRI 209
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 98/175 (56%), Gaps = 16/175 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
I+Y +RK+ +A++L G A Y+A L ++LR H + F + ++VATIAFGM
Sbjct: 232 IVYCLSRKKVEEVAEFLGNQGFPALPYHAGL-SNELRAHHQKRFLNEEGLIMVATIAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSE 631
GIDK NVR + H P+SLEAYYQE GRAGRDG AD + L + L + S +
Sbjct: 291 GIDKPNVRFVAHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVLLLRQMMQSSEGD 350
Query: 632 DQTKQAYR-----MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
++ K+ R ML+ C + CR + L+ YF E+ + C CD CVDG
Sbjct: 351 ERHKRVERHKLEAMLALC-----EETRCRRQALLAYFDEEMP-QPCGHCDNCVDG 399
>gi|120434956|ref|YP_860642.1| ATP-dependent DNA helicase RecQ [Gramella forsetii KT0803]
gi|117577106|emb|CAL65575.1| ATP-dependent DNA helicase RecQ [Gramella forsetii KT0803]
Length = 732
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 138/227 (60%), Gaps = 23/227 (10%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
E+ ++ LK++FG S K Q+E +++ + D V+ TG GKSLC+Q+PAL++ +
Sbjct: 5 EIDLHKELKRYFGFSQFKGLQEEVITSIVNGKDTFVVMPTGGGKSLCYQLPALISDGTAI 64
Query: 218 VISPLISLMHDQCSKL----SKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCP 268
V+SPLI+LM +Q + S+HGV A L S NK E K ++ G+ ++YV P
Sbjct: 65 VVSPLIALMKNQVDAIRSISSEHGV-AHVLNSSL--NKTEVKQVKDDISNGICKLLYVAP 121
Query: 269 ETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
E++ + + +++ IA A+DE HC+S+WGHDFRP+YR L N LK +
Sbjct: 122 ESLTK--EDYVDFLKNQTIAFLAVDEAHCISEWGHDFRPEYRNLR--------NILKRIG 171
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+IP++ LTATAT +V+EDILK+L ++ F SF RPNL + V+
Sbjct: 172 DNIPVIGLTATATPKVQEDILKNLGITDAKTFK-ASFNRPNLYYEVR 217
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 108/194 (55%), Gaps = 7/194 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ +A+ L G+KA Y+A L + + F ++VVVATIAFGMG
Sbjct: 240 IIYCLSRKKVEELAQTLQVNGIKAVPYHAGLDAKKRSKHQDMFLMEDIDVVVATIAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSED 632
IDK +VR +IH+ P+S+E+YYQE GRAGRDG C+ Y ++ + + + +
Sbjct: 300 IDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDIEKLEKFMSGKPVAE 359
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDV--CVDGPPEMKNLKE 690
Q + + +L + Y TS R K ++ YFGE+FS E D+ V P + KE
Sbjct: 360 Q-EIGHALLQEVVAYA-ETSVSRRKFILHYFGEEFSSETGDGADMDDNVRYPKKQVEAKE 417
Query: 691 EANILMQVIAAYNE 704
+ +L++++ NE
Sbjct: 418 DLELLLRMVKETNE 431
>gi|453362794|dbj|GAC81320.1| ATP-dependent DNA helicase RecQ [Gordonia malaquae NBRC 108250]
Length = 610
Score = 162 bits (409), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 147/269 (54%), Gaps = 25/269 (9%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ +L+ FG+ + Q++ +S ++ D +VL TG GKSLC+Q+PAL+ VV+SP
Sbjct: 5 HEVLRTVFGYEQFRGDQEQIVSQVVSGGDAVVLMPTGGGKSLCYQVPALIRDGCAVVVSP 64
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ L + GV A +L S Q + E+ L G +IYV PE L +P
Sbjct: 65 LIALMSDQVGALRQLGVRAAYLNSTQSSEERSATERAYLAGELDLIYVAPEG---LSRPY 121
Query: 279 QRLAESRG-IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
R SRG ++L AIDE HCVS+WGHDFRPDY L +L L D+P +ALT
Sbjct: 122 TRDFLSRGKLSLIAIDEAHCVSQWGHDFRPDYLAL---------GDLAELWPDVPRIALT 172
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYT 397
ATAT + E+I + LH+ FV +SF RPN+ + ++ ++ QL+D
Sbjct: 173 ATATRRTHEEITERLHLQNARHFV-SSFDRPNITYRIEPKNQPTK--------QLLDFIR 223
Query: 398 KKKKTGEKEKSAIPQDLDDQSDTSSSSSM 426
+ ++ + I L +S S+++ +
Sbjct: 224 TEGVVDGEQATGIVYALSRKSVESTAAYL 252
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 116/233 (49%), Gaps = 33/233 (14%)
Query: 489 SFERTDLL------NKPAERL--SMLQEPLEDG---LTIIYVPTRKETLSIAKYLCGFGV 537
SF+R ++ N+P ++L + E + DG I+Y +RK S A YL G+
Sbjct: 198 SFDRPNITYRIEPKNQPTKQLLDFIRTEGVVDGEQATGIVYALSRKSVESTAAYLVKNGI 257
Query: 538 KAAAYNASLPKSQLR--RVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEA 595
A Y+A L K +LR +H E+ + VVVATIAFGMGIDK +VR + H P+S+E
Sbjct: 258 NALPYHAGLDK-RLRDETLHRFLREDGI-VVVATIAFGMGIDKPDVRFVAHIDLPKSVEG 315
Query: 596 YYQEAGRAGRDG---------HLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFR 646
YYQE GRAGRDG LAD V L M + R Q+ ML+ C
Sbjct: 316 YYQETGRAGRDGLPSVAWMAYGLADVVQQQRLIQMSDGDAAHR-RSQSAHLNAMLALC-- 372
Query: 647 YGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
T+ CR + L+ YF +D C CD C+ PP+ + A LM I
Sbjct: 373 ---ETASCRRQQLLRYFDQDSG--PCGNCDTCLT-PPKTWDGTVAAQKLMATI 419
>gi|5281068|gb|AAD41441.1|U92536_1 RECQ helicase homolog [Drosophila melanogaster]
Length = 1487
Score = 162 bits (409), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 128/218 (58%), Gaps = 18/218 (8%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L FG S + Q + ++A L +DC VL TG GKSLC+Q+PA+LT V +VISPL S
Sbjct: 729 LSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKS 788
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETV---IRLIK 276
L+ DQ +KL+ + A L Q V + ++ M ++YV PE + R
Sbjct: 789 LIFDQINKLASLDICAESLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQD 848
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L L + I+ F IDE HCVS+WGHDFRPDY++L VL++ F ++P +AL
Sbjct: 849 TLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFP---------NVPTIAL 899
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TATAT +VR DIL L++ K K+ L+SF R NLR+ V
Sbjct: 900 TATATPRVRLDILAQLNL-KNCKWFLSSFNRSNLRYRV 936
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 102/179 (56%), Gaps = 18/179 (10%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RKE +K +C GV+A +Y+A L + ++ K+ V+ AT+AFGMG
Sbjct: 962 IIYCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMG 1021
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM---PTLLPSRRS-- 630
IDK +VR ++HY P+S+E YYQEAGRAGRDG +ADC+LY N S M +L S ++
Sbjct: 1022 IDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDKALQ 1081
Query: 631 ----EDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-----QLCDVCVD 680
+ YR++ C N + CR ++YFG F+ E+C CD C++
Sbjct: 1082 YNVKKIHVDNLYRIVGYC----ENLTDCRRAQQLDYFGGHFTSEQCLENRETACDNCIN 1136
>gi|375097299|ref|ZP_09743564.1| ATP-dependent DNA helicase RecQ [Saccharomonospora marina XMU15]
gi|374658032|gb|EHR52865.1| ATP-dependent DNA helicase RecQ [Saccharomonospora marina XMU15]
Length = 601
Score = 162 bits (409), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 127/214 (59%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK+ FG+ S ++ Q+E + + D LVL TG GKSLC+QIPAL+ V VV+SPLI
Sbjct: 9 VLKEVFGYDSFRDGQREIVDHVTSGGDALVLMPTGGGKSLCYQIPALVRDGVGVVVSPLI 68
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LM DQ L GV A FL S Q ++ VE + L G ++Y+ PE + + R
Sbjct: 69 ALMQDQVDALRHAGVRAGFLNSTQDGDQRRTVEAQFLAGELDLLYLAPERL--RLDSTYR 126
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L + ++LFAIDE HCVS+WGHDFRPDY LS L E + ++P +ALTATA
Sbjct: 127 LLDRGTVSLFAIDEAHCVSQWGHDFRPDYLALSQLHERWP---------EVPRIALTATA 177
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
T Q ++I L + FV SF RPN+++ +
Sbjct: 178 TRQTHDEIATRLGLEAAKHFV-ASFDRPNIQYRI 210
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 93/213 (43%), Gaps = 5/213 (2%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
A+ L +L+ I+Y TR+ A++L + A Y+A L + R F
Sbjct: 218 AQLLELLRTEHSGDCGIVYCATRRSVEDTAEFLTRNAITALPYHAGLDSTTRARHQARFL 277
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
V+VATIAFGMGIDK +VR + H P+S+E+YYQE GRAGRDG + L L
Sbjct: 278 REDGLVMVATIAFGMGIDKPDVRFVAHLDLPKSIESYYQETGRAGRDGLPSTAWLAYGLQ 337
Query: 620 SMPTLLPSRRSEDQTKQAYRMLS---DCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCD 676
+ D R L+ D T CR L+ YFG++ +C CD
Sbjct: 338 DVVQQRKLIDGSDGDAAHRRRLATHLDAMLALCETVECRRARLLAYFGQESG--RCGNCD 395
Query: 677 VCVDGPPEMKNLKEEANILMQVIAAYNEQSNSM 709
C+ P +L V+ E+
Sbjct: 396 TCLSPPRSWDGTVAAQKLLSTVVRLRRERGQQF 428
>gi|354504169|ref|XP_003514150.1| PREDICTED: Bloom syndrome protein homolog, partial [Cricetulus
griseus]
Length = 950
Score = 162 bits (409), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 654 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 713
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 714 SLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLI 773
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L + + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 774 STLENLYDRKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 824
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 825 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 862
>gi|145345256|ref|XP_001417132.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577359|gb|ABO95425.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 465
Score = 162 bits (409), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 136/261 (52%), Gaps = 30/261 (11%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
V + LK FG + + Q+E + A LA D V +TGSGKSL +Q+ A +GK VV+S
Sbjct: 52 VRATLKARFGLDAFRPGQREVVEAVLAGRDACVFWSTGSGKSLPYQLAAFASGKSAVVVS 111
Query: 221 PLISLMHDQCSKLS--------KHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI 272
PLISLM DQ + L+ K G A FLGS Q D+ E + G Y I+Y PE +
Sbjct: 112 PLISLMQDQVTALNNTVGRGDGKDGDVAVFLGSAQMDHGAEARVFEGAYEIVYCTPEKLT 171
Query: 273 ---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKF 329
+ L+ LA + L AIDE HC+S WGHDFRP Y +L +LR+
Sbjct: 172 ASDSFLNGLKSLAARGRLGLIAIDEAHCISAWGHDFRPSYTQLHMLRDAIP--------- 222
Query: 330 DIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDF 389
++P+MALTATA VR+DI K L + + + S R NL +V + DF
Sbjct: 223 NVPIMALTATAVRHVRDDISKILRL-RDPYVSVNSVDRTNLHINVVR---------RTDF 272
Query: 390 CQLIDIYTKKKKTGEKEKSAI 410
+ +D ++ + G + AI
Sbjct: 273 SRDLDYIVERVRAGARVSPAI 293
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 9/171 (5%)
Query: 516 IIYVPTRKETLSIAKYL---CGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
I+Y PT E + +A L G V Y+ + + H +F ++ V+VAT AF
Sbjct: 293 IVYCPTIAEVVKVAGALKQRLGDDV-VRMYHGQMSPPERHDAHMDFLTSRSPVIVATTAF 351
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSED 632
GMGIDK +VR I G +++E +YQ+ GRAGRDG ++ + ++D
Sbjct: 352 GMGIDKPDVRAITLLGASKTMEEFYQQIGRAGRDGLASEVSMLFTDGDFTRYASDFYTKD 411
Query: 633 QTKQA----YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-QLCDVC 678
T QA + + + +N CR +++++FGE +C CD C
Sbjct: 412 LTPQARDAQAKSTNALKEFALNRETCRRVMIMKHFGETAPFVRCGGTCDNC 462
>gi|328545859|ref|YP_004305968.1| atp-dependent dna helicase [Polymorphum gilvum SL003B-26A1]
gi|326415599|gb|ADZ72662.1| Probable atp-dependent dna helicase protein [Polymorphum gilvum
SL003B-26A1]
Length = 620
Score = 162 bits (409), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 134/244 (54%), Gaps = 27/244 (11%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ +L+ FG++S + Q+E + +A D +VL TG+GKSLC+QIPAL +VISP
Sbjct: 21 HRILQDVFGYASFRGRQQEVVDTLMAGGDAVVLFPTGAGKSLCYQIPALCRPGTGIVISP 80
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL-----RGMYSIIYVCPETVIRLIK 276
LI+LM DQ L GV A L S + EQ A+ RG ++YV PE V +
Sbjct: 81 LIALMKDQVGALKAAGVRAAALNSAI--STEEQAAIGAALRRGELDLLYVTPERVATI-- 136
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
RL E IALFAIDE HCVS+WGHDFRP+Y L+ L E + +P +AL
Sbjct: 137 GFARLMEGVPIALFAIDEAHCVSQWGHDFRPEYLMLASLAERYPG---------VPRVAL 187
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIY 396
TATA REDI L + F TSF RPN+R+ + RA+ ++ QL+D
Sbjct: 188 TATADPHTREDIRLRLKLDTAQVFT-TSFDRPNIRYEI-----VERANQRQ---QLLDFL 238
Query: 397 TKKK 400
+ K
Sbjct: 239 ARHK 242
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 112/222 (50%), Gaps = 15/222 (6%)
Query: 489 SFERTDLLNKPAERLSMLQEPL--------EDGLTIIYVPTRKETLSIAKYLCGFGVKAA 540
SF+R ++ + ER + Q+ L E G I+Y +R + IA +L G++A
Sbjct: 214 SFDRPNIRYEIVERANQRQQLLDFLARHKGESG--IVYCLSRAKVDDIAGWLTEKGIRAL 271
Query: 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A L + F + V+VAT+AFGMGIDK +VR + H P S+EAYYQE
Sbjct: 272 PYHAGLERETREANQDAFLLEESLVLVATVAFGMGIDKPDVRFVAHLDLPSSVEAYYQET 331
Query: 601 GRAGRDGHLADCVLYANLSSMPT---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG A+ + ++ M ++ + D+ K+A + T+ CR +
Sbjct: 332 GRAGRDGAPAEAWMAYGMADMVQRRRMIAEGDAPDEVKRAETAKLNALLGICETAGCRRQ 391
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
L+ +FGED+ + C CD C+ P E + E A M +
Sbjct: 392 ALLAHFGEDYP-KPCGNCDTCLS-PVETWDGTEAAAKFMSAV 431
>gi|195501810|ref|XP_002097953.1| GE10090 [Drosophila yakuba]
gi|194184054|gb|EDW97665.1| GE10090 [Drosophila yakuba]
Length = 1490
Score = 162 bits (409), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 130/221 (58%), Gaps = 18/221 (8%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG S + Q + ++A L +DC VL TG GKSLC+Q+PA+LT V +VISPL SL+ D
Sbjct: 736 FGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFD 795
Query: 229 QCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETV---IRLIKPLQR 280
Q +KL+ + A L Q V + ++ M ++YV PE + R L
Sbjct: 796 QINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQDTLDT 855
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L + I+ F IDE HCVS+WGHDFRPDY++L VL++ F ++P +ALTATA
Sbjct: 856 LNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFP---------NVPTIALTATA 906
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
T +VR DIL L++ K K+ L+SF R NLR+ V K +S
Sbjct: 907 TPRVRLDILAQLNL-KNCKWFLSSFNRSNLRYMVLPKKGTS 946
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 103/175 (58%), Gaps = 10/175 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RKE +K +C GV++ AY+A L S+ ++ K+ V+ ATIAFGMG
Sbjct: 965 IIYCLSRKECDETSKKMCKDGVRSVAYHAGLTDSEREGRQKDWLTGKIRVICATIAFGMG 1024
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR ++HY P+S+E YYQEAGRAGRDG +A+C+LY N + M L S+ +
Sbjct: 1025 IDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVAECILYYNYADMLRLKKMMDSDKALQ 1084
Query: 636 QAYRML--SDCFR---YGMNTSCCRAKILVEYFGEDFSHEKC-----QLCDVCVD 680
+ + + +R Y N + CR ++YFGE F+ E+C CD C++
Sbjct: 1085 YNVKKIHVDNLYRIVGYCENLTDCRRAQQLDYFGEHFTSEQCLENKGTACDNCLN 1139
>gi|163803190|ref|ZP_02197072.1| ATP-dependent DNA helicase RecQ [Vibrio sp. AND4]
gi|159173011|gb|EDP57845.1| ATP-dependent DNA helicase RecQ [Vibrio sp. AND4]
Length = 611
Score = 162 bits (409), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 141/261 (54%), Gaps = 20/261 (7%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
SD V +LK FG+ + ++ Q+ + A + D LV+ TG GKSLC+QIPAL+
Sbjct: 10 SDSPVTPQRVLKDVFGYQAFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSG 69
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETV 271
+ +VISPLISLM DQ +L +GV A + S P V + G ++YV PE V
Sbjct: 70 ITIVISPLISLMKDQVDQLKANGVAAECINSTMPRETLLSVYNRMHTGHLKLVYVSPERV 129
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
L++ E+ +++ A+DE HC+S+WGHDFRP+Y L L+ F +
Sbjct: 130 --LMRDFIERLENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKRQFS---------HV 178
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---K 386
P MALTATA R DIL+ L ++ + L SF RPN+R+++ KH S Y +
Sbjct: 179 PFMALTATADDATRRDILERLQLNNPEVY-LGSFDRPNIRYNLVEKHKPVSQVVRYLDTQ 237
Query: 387 KDFCQLIDIYTKKKKTGEKEK 407
K C +I ++KK EK
Sbjct: 238 KGNCGIIYCGSRKKVEMVTEK 258
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 133/252 (52%), Gaps = 19/252 (7%)
Query: 458 EFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLL--NKPAERLSMLQEPLEDGLT 515
+ LE +++ +V G F DR R +L+ +KP ++ + +
Sbjct: 194 DILERLQLNNPEVYLGSF-----------DRPNIRYNLVEKHKPVSQVVRYLDTQKGNCG 242
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ + + LC ++AA Y+A + + V F + +++VVAT+AFGMG
Sbjct: 243 IIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQDAFQRDDIQIVVATVAFGMG 302
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ ++ A++S + +L +
Sbjct: 303 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGP 362
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
Q + L+ + CR ++L+ YFGE + + C CD+C+D PP+ + EEA
Sbjct: 363 QKQVETHKLNAMSAFA-EAQTCRRQVLLNYFGE-YREKPCGNCDICLD-PPKHFDATEEA 419
Query: 693 NILMQVIAAYNE 704
+ + N+
Sbjct: 420 RKALSCVYRVNQ 431
>gi|386021174|ref|YP_005939198.1| ATP-dependent DNA helicase RecQ [Pseudomonas stutzeri DSM 4166]
gi|327481146|gb|AEA84456.1| ATP-dependent DNA helicase RecQ [Pseudomonas stutzeri DSM 4166]
Length = 707
Score = 162 bits (409), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 131/220 (59%), Gaps = 19/220 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ + + Q + + D LVL TG GKSLC+Q+PALL + VV+
Sbjct: 4 QAQRILKDVFGYDAFRGNQGAIIERVGSGGDALVLMPTGGGKSLCYQVPALLREGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVI--RL 274
SPLI+LM DQ + L + GV+A L S + ++ RG ++Y+ PE ++ R+
Sbjct: 64 SPLIALMDDQVATLDELGVSAVALNSTLSADEQRDIAERIRRGEIKMLYLAPERLVQPRM 123
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ LQRL IALFAIDE HCVS+WGHDFRP+Y +L L E F ++P +
Sbjct: 124 LAFLQRLE----IALFAIDEAHCVSQWGHDFRPEYMQLGQLAELFP---------NVPRI 170
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA + RE+I++ LH+ +F L+SF RPN+ + +
Sbjct: 171 ALTATADKRTREEIVQRLHLENAERF-LSSFDRPNIFYRI 209
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 108/204 (52%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L L E D I+Y +RK+ +A +L G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLGFLAERRGDA-GIVYCMSRKKVDDLAAFLTEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP ++LR H + F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NELRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSS---MPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD + L + +L + +++ K+ + D + CR +
Sbjct: 317 GRAGRDGLPADAWMAYGLQDVIFLKQMLNNSEGDERHKRVEQHKLDAMLALCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF E+ C CD CVDG
Sbjct: 377 ALLAYFDEELPR-PCGHCDNCVDG 399
>gi|256828446|ref|YP_003157174.1| ATP-dependent DNA helicase RecQ [Desulfomicrobium baculatum DSM
4028]
gi|256577622|gb|ACU88758.1| ATP-dependent DNA helicase RecQ [Desulfomicrobium baculatum DSM
4028]
Length = 748
Score = 162 bits (409), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 123/216 (56%), Gaps = 19/216 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG+ Q+ + LA D +VL TG GKSLC+QIPAL+ VV+SPLI
Sbjct: 7 ILRTVFGYDGFVGPQEAIIKTLLAGRDAVVLMPTGGGKSLCYQIPALIRPGTAVVVSPLI 66
Query: 224 SLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKP--L 278
+LM DQ L+++GV A +L S VE + L G +IYV PE RL P L
Sbjct: 67 ALMRDQVQSLTQNGVRAAYLNSSLSAAEARSVEAELLAGRLDLIYVAPE---RLFLPGFL 123
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
++L +ALFAIDE HCVS+WGHDFRP+Y RL ++ E F D+P +ALTA
Sbjct: 124 EQLGRI-PLALFAIDEAHCVSQWGHDFRPEYTRLGMIAERFP---------DVPRLALTA 173
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA R DI++ L + F + F RP +R+ V
Sbjct: 174 TADDLTRADIIRQLRLESAQVFA-SGFDRPGIRYLV 208
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 99/195 (50%), Gaps = 27/195 (13%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566
Q P E G I+Y +RK+ + A LC G A Y+A L + R F ++
Sbjct: 225 QSPGEAG--IVYRMSRKKVEATAASLCKQGFAALPYHAGLDPATRERNQERFMREDGVIM 282
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG---------HLADCVLYAN 617
VAT+AFGMG+DK NVR ++H P SLEAY+QE GRAGRDG L D +
Sbjct: 283 VATVAFGMGVDKPNVRFVVHLDPPTSLEAYHQETGRAGRDGLPAVALMTYGLGDIAMLRR 342
Query: 618 LSSM---PTLLP---------SRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGE 665
L +M + LP SR ++ KQ + L+ Y T+ CR ++L+ YFGE
Sbjct: 343 LVAMDAGSSRLPVDIGEGRGESRARHERLKQ--QKLTSLLGY-CETTNCRRQVLLRYFGE 399
Query: 666 DFSHEKCQLCDVCVD 680
D C CD+C++
Sbjct: 400 DLPR-PCGNCDICLN 413
>gi|15806307|ref|NP_295013.1| DNA helicase RecQ [Deinococcus radiodurans R1]
gi|6459036|gb|AAF10859.1|AE001976_2 DNA helicase RecQ [Deinococcus radiodurans R1]
Length = 824
Score = 162 bits (409), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 127/215 (59%), Gaps = 17/215 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LL+ +G+ + + Q E + + LVL TG GKSLC+Q+P+LL +V+SPLI
Sbjct: 15 LLQTIWGYPAFRGVQGEIVQQVAEGGNALVLMPTGGGKSLCYQLPSLLRPGTGIVVSPLI 74
Query: 224 SLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LM DQ L ++GV A FL S +VE LRG ++YV PE RL+ P
Sbjct: 75 ALMKDQVDTLRQNGVRAAFLNSTLLPHEAREVEDALLRGDLDLLYVAPE---RLLMPRTL 131
Query: 281 -LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L E +ALFAIDE HCVS+WGHDFRP+Y++LSVL E F ++P +ALTAT
Sbjct: 132 DLLERAPVALFAIDEAHCVSQWGHDFRPEYQQLSVLAERFP---------ELPRVALTAT 182
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
A + R DI L + +FV +SF RPN+++ V
Sbjct: 183 ADERTRADIKSVLRLEDAPQFV-SSFDRPNIQYRV 216
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 129/257 (50%), Gaps = 12/257 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK AK+L G+ A AY+A L ++ V F + +V AT+AFGMG
Sbjct: 240 IVYCLSRKSVEETAKWLQAQGIDALAYHAGLSSTERNNVQERFLNEEGVIVCATVAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS---SMPTLLPSRRSED 632
IDK NVR + H P+S+E YYQE GRAGRDG + + LS ++ +L + +
Sbjct: 300 IDKPNVRFVAHLDLPKSMEGYYQETGRAGRDGLPSTAWMVYGLSDVVNVRRMLAQSDAPE 359
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ K+ D + CR ++L+ YFGE+ S E C CDVC++ PP +++L EA
Sbjct: 360 EVKRVEASKLDALLTYCEAATCRRQVLLHYFGEELS-EPCGNCDVCLN-PPRVRDLTREA 417
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWW 752
+ + + + D + G + K + + + ++ + ++ + L W
Sbjct: 418 QMALSATIRTGNRFGAAHLTD-VLLGRETDKVLAQGHHQLPTFGVGKEHDEKL------W 470
Query: 753 RGLARIMENKGYIREGD 769
R + R + + GY+ D
Sbjct: 471 RSVLRQLVSLGYLSADD 487
>gi|398863479|ref|ZP_10619044.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM78]
gi|398247691|gb|EJN33127.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM78]
Length = 708
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 128/219 (58%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIRRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + + I+LFAIDE HCVS+WGHDFRP+Y +L L E F D+P +A
Sbjct: 121 PRMLSFLQGLNISLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I+ LH+ + +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVTRLHLQEAERF-LSSFDRPNIFYRI 209
Score = 108 bits (271), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 102/203 (50%), Gaps = 12/203 (5%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L L E D I+Y +RK+ +A +L G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLGFLAERRSDA-GIVYCLSRKKVEEVATFLTEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A LP F + ++VAT+AFGMGIDK NVR + H P+SLEAYYQE G
Sbjct: 258 YHAGLPNDLRAHNQKRFLNEEGLIMVATVAFGMGIDKPNVRFVAHLDLPKSLEAYYQETG 317
Query: 602 RAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
R GRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 318 RGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQT 377
Query: 659 LVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED E C CD CVDG
Sbjct: 378 LLAYFDEDMP-EPCGHCDNCVDG 399
>gi|421153375|ref|ZP_15612923.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa ATCC 14886]
gi|404523775|gb|EKA34171.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa ATCC 14886]
Length = 712
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 130/216 (60%), Gaps = 19/216 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK FG+ + + Q + D LVL TG GKSLCFQ+PALL + VV+SPLI
Sbjct: 8 ILKDVFGYDAFRGNQARIIERVAEGGDALVLMPTGGGKSLCFQVPALLREGLTVVVSPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGSG-QPDNK--VEQKALRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ + L + GV A L S P+ + + ++ RG ++Y+ PE ++ R++ L
Sbjct: 68 ALMEDQVATLDELGVPAVALNSTLNPEQQRDIAERLQRGEIKLLYLAPERLVQPRMLAFL 127
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
QRL + LFAIDE HCVS+WGHDFRP+Y +L L E F +P +ALTA
Sbjct: 128 QRLP----VGLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFP---------QVPRIALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA ++ RE++++ LH+ +F L+SF RPN+ + +
Sbjct: 175 TADMRTREEMIQRLHLQNAEQF-LSSFDRPNIFYRI 209
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 98/175 (56%), Gaps = 16/175 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
I+Y +RK+ +A++L G A Y+A L ++LR H + F + ++VATIAFGM
Sbjct: 232 IVYCLSRKKVEEVAEFLGNQGFPALPYHAGL-SNELRAHHQKRFLNEEGLIMVATIAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSE 631
GIDK NVR + H P+SLEAYYQE GRAGRDG AD + L + L + S +
Sbjct: 291 GIDKPNVRFVAHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVLLLRQMMQSSEGD 350
Query: 632 DQTKQAYR-----MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
++ K+ R ML+ C + CR + L+ YF E+ + C CD CVDG
Sbjct: 351 ERHKRVERHKLEAMLALC-----EETRCRRQALLAYFDEEMP-QPCGHCDNCVDG 399
>gi|298251484|ref|ZP_06975287.1| ATP-dependent DNA helicase RecQ [Ktedonobacter racemifer DSM 44963]
gi|297546076|gb|EFH79944.1| ATP-dependent DNA helicase RecQ [Ktedonobacter racemifer DSM 44963]
Length = 739
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 129/224 (57%), Gaps = 17/224 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK +FG+ + Q+E + L+ D L TG+GKSL +Q+ LL V ++ISPLI+
Sbjct: 8 LKHYFGYEAFLPGQREVIEQALSGRDAFALMPTGAGKSLIYQLSGLLLNGVSIIISPLIA 67
Query: 225 LMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVI--RLIKPLQ 279
LM DQ +L +G+ A FL S ++ E++ L+G ++YV PE ++ + L
Sbjct: 68 LMQDQVDRLKTNGIPATFLNSALSASERSQREREILQGKLKLVYVAPERLLTQTFLTFLD 127
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ E G+ L A+DE HCVS+WGHDFRP+YR+L LR + +P MALTAT
Sbjct: 128 EVQERVGLGLIAVDEAHCVSEWGHDFRPEYRQLGRLRVRYP---------QVPAMALTAT 178
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSS 381
AT +V+EDIL L ++ V S+ RPNL + V KH T S
Sbjct: 179 ATERVQEDILTQLKLNDPYVEV-ASYNRPNLYYEVRQKHQNTYS 221
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 104/186 (55%), Gaps = 5/186 (2%)
Query: 497 NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHT 556
N +E + L+E D IIY +RK +IA L G++A Y+A L + R
Sbjct: 218 NTYSELVQFLREQ-SDAPVIIYCQSRKNVDTIADSLQHHGIRALPYHAGLSTDERTRNQD 276
Query: 557 EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY- 615
F + + V+VATIAFGMGI K +VR +IHY P+SLE YYQE+GRAGRDG A C+L+
Sbjct: 277 SFIHDDVPVLVATIAFGMGIAKPDVRAVIHYDMPKSLEGYYQESGRAGRDGLEARCILFY 336
Query: 616 --ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ 673
+ +L + E + +A + + Y +T CR K L+ YFGE+F+ E C
Sbjct: 337 QHGDRMKYEFILAQKEDEHELLKARQQIQQVITYSESTG-CRRKALLAYFGENFTEENCG 395
Query: 674 LCDVCV 679
CD C+
Sbjct: 396 NCDNCL 401
>gi|167838217|ref|ZP_02465076.1| ATP-dependent DNA helicase RecQ [Burkholderia thailandensis MSMB43]
gi|424907678|ref|ZP_18331149.1| ATP-dependent DNA helicase RecQ [Burkholderia thailandensis MSMB43]
gi|390926958|gb|EIP84375.1| ATP-dependent DNA helicase RecQ [Burkholderia thailandensis MSMB43]
Length = 615
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 130/219 (59%), Gaps = 21/219 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV----VVI 219
+L + FG+ + + Q E + A DCLVL TG GKSLC+QIPAL+ + +V+
Sbjct: 7 ILNEVFGYPAFRGQQGEIVEHVAAGGDCLVLMPTGGGKSLCYQIPALVRSEAGRGAGIVV 66
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + LS+ GV A +L S + ++ALR G ++YV PE RL+
Sbjct: 67 SPLIALMQDQVAALSEVGVRAAYLNSTLSGAEAAATERALRDGDIDLLYVAPE---RLMT 123
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P L E I LFAIDE HCVS+WGHDFRP+Y +LSVL E F D+P +A
Sbjct: 124 PRFLDLLERARIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------DVPRIA 174
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA R++I+ L + FV +SF RPN+R+ +
Sbjct: 175 LTATADAITRDEIVHRLALDDARIFV-SSFDRPNIRYRI 212
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 11/195 (5%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVV 567
DG T ++Y +R++ A++L GV+A Y+A + + ++R+ H E F + V+
Sbjct: 234 DGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGM-EFEIRQKHQEMFQREEGVVMC 292
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 293 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPANAWMAYGLGDVVQQRKM 352
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D T+ CR L+ YFGE + C CD C++ PP
Sbjct: 353 IDESEADDTHKRVQTSKLDALLGLCETASCRRVRLLAYFGE--TSGPCGNCDTCLE-PPA 409
Query: 685 MKNLKEEANILMQVI 699
+ EA + + +
Sbjct: 410 TWDATREAQMALSCV 424
>gi|89889904|ref|ZP_01201415.1| ATP-dependent DNA helicase RecQ [Flavobacteria bacterium BBFL7]
gi|89518177|gb|EAS20833.1| ATP-dependent DNA helicase RecQ [Flavobacteria bacterium BBFL7]
Length = 719
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 131/218 (60%), Gaps = 19/218 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ LLKKHFG+ S + Q++ + LAH D +V+ TG GKS+CFQ+P+L+ V +V+SP
Sbjct: 4 HDLLKKHFGYDSFRPLQEQIIDDVLAHKDLMVVMPTGGGKSMCFQLPSLILEGVTLVVSP 63
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGM----YSIIYVCPETVIRLIKP 277
LI+LM DQ L +G+TA + S Q + +Q+ L+ + ++YV PE++ L+
Sbjct: 64 LIALMKDQVDSLRANGITAGYFNSSQVGTE-QQEMLQLLKENRLKLLYVAPESIQLLLHH 122
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L+ I+L AIDE HC+S WGHDFRP Y +L+ L+++F + L+ALT
Sbjct: 123 LK----PTDISLIAIDEAHCISTWGHDFRPAYTQLAYLKKSFP---------EAGLIALT 169
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
ATA R DI K L +S ++V SF RPNL V+
Sbjct: 170 ATADRATRADIKKQLAISHAQEYV-ASFDRPNLTLEVR 206
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 112/204 (54%), Gaps = 16/204 (7%)
Query: 489 SFERTDL---LNKPAERLSMLQEPL---EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R +L + +RL+ ++ L +D IIY +RK ++ L G AAY
Sbjct: 195 SFDRPNLTLEVRPGNDRLAQVRRFLKKYQDESGIIYCLSRKSCEKLSDKLSSLGFSVAAY 254
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L V +F ++++++V ATIAFGMGIDK NVR +IHY P+++E YYQE GR
Sbjct: 255 HAGLEHRFRESVQEQFIKDEIKIVCATIAFGMGIDKSNVRFVIHYNMPKNIEGYYQEIGR 314
Query: 603 AGRDGHLADCVLYANLSSMPTLL----PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
AGRDG A +L+ + + + L S SE Q + RM + + CR ++
Sbjct: 315 AGRDGIDAHALLFHSYADVIQLRNFASDSGNSEVQIAKLERM-----KQFADALTCRRRM 369
Query: 659 LVEYFGEDFSHEKCQLCDVCVDGP 682
L+ YF E ++ C CDVC++ P
Sbjct: 370 LLSYFNEYLEND-CGNCDVCLNKP 392
>gi|152988455|ref|YP_001347169.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa PA7]
gi|452877674|ref|ZP_21954938.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa VRFPA01]
gi|150963613|gb|ABR85638.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa PA7]
gi|452185615|gb|EME12633.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa VRFPA01]
Length = 711
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 129/216 (59%), Gaps = 19/216 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK FG+ + + Q + D LVL TG GKSLCFQ+PALL + VV+SPLI
Sbjct: 8 ILKDVFGYDAFRGNQARIIERVADGGDALVLMPTGGGKSLCFQVPALLRDGLTVVVSPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ + L + GV A L S + ++ ++ RG ++Y+ PE ++ R++ L
Sbjct: 68 ALMEDQVATLDELGVPAVALNSTLNPEQQREIAERLQRGEIKLLYLAPERLVQPRMLAFL 127
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
QRL + LFAIDE HCVS+WGHDFRP+Y +L L E F +P +ALTA
Sbjct: 128 QRLP----VGLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFP---------QVPRIALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA ++ RE++++ LH+ +F L+SF RPN+ + +
Sbjct: 175 TADMRTREEMIQRLHLQNAEQF-LSSFDRPNIFYRI 209
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 98/175 (56%), Gaps = 16/175 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
I+Y +RK+ +A++L G A Y+A L ++LR H + F + ++VATIAFGM
Sbjct: 232 IVYCLSRKKVEEVAEFLGNQGFPALPYHAGL-SNELRAHHQKRFLNEEGLIMVATIAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSE 631
GIDK NVR + H P+SLEAYYQE GRAGRDG AD + L + L + S +
Sbjct: 291 GIDKPNVRFVAHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVLLLRQMMQSSEGD 350
Query: 632 DQTKQAYR-----MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
++ K+ R ML+ C + CR + L+ YF E+ + C CD CVDG
Sbjct: 351 ERHKRVERHKLEAMLALC-----EETRCRRQALLAYFDEEMP-QPCGHCDNCVDG 399
>gi|410960520|ref|XP_003986837.1| PREDICTED: Bloom syndrome protein [Felis catus]
Length = 1428
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 669 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 728
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 729 SLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLI 788
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 789 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 839
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 840 LTATANPRVQKDILTQLKILQPQVFSM-SFNRHNLKYYV 877
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 97/175 (55%), Gaps = 12/175 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVVATIAFGM 574
IIY +R+E ++A L G+ A AY+A L S V H +++ +V+ ATIAFGM
Sbjct: 903 IIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGM 962
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL----LPSRRS 630
GIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L L +
Sbjct: 963 GIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEKDG 1022
Query: 631 EDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL-----CDVC 678
T++ + L Y N + CR L+ YFGE+ F+ + C+ CD C
Sbjct: 1023 NRHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKYPDVSCDNC 1077
>gi|356531519|ref|XP_003534325.1| PREDICTED: ATP-dependent DNA helicase Q-like 2-like [Glycine max]
Length = 695
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 137/227 (60%), Gaps = 17/227 (7%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
+W+ + + + FG SS + Q+E ++A ++ D LV+ A G GKSLC+Q+PA+L +
Sbjct: 71 EWDSEADDVRLNVFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGI 130
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGS-GQPDNKVEQKAL---RGMYSIIYVCPETV 271
+V+SPL+SL+ DQ L+ G+ A L S + D K K L G I+YV PE +
Sbjct: 131 ALVVSPLLSLIQDQVMGLTALGIPAYMLTSTNKGDEKFIYKTLEKGEGELKILYVTPEKI 190
Query: 272 I---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
R + L++ + ++L +IDE HC S+WGHDFRPDY+ LS+L+ F
Sbjct: 191 SKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKSLSILKTQFPR------- 243
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+P++ALTATAT +V+ D+++ LH+ + KFV ++ RPNL + VK
Sbjct: 244 --VPIVALTATATQRVQNDLIEMLHIPRCVKFV-STVNRPNLFYMVK 287
Score = 112 bits (280), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 92/164 (56%), Gaps = 6/164 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RKE +AK L G+ A Y+A + + +VH + NKL+V+V T+AFGMG
Sbjct: 315 IVYCFSRKECEQVAKELRERGISADYYHADMDVNAREKVHMRWSNNKLQVIVGTVAFGMG 374
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K +VR +IH+ +S+E YYQE+GRAGRDG ++C+LY P E+
Sbjct: 375 INKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDAPRQSSMVFYENSGL 434
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ-LCDVC 678
Q L D RY ++ CR +F E ++C +CD+C
Sbjct: 435 QN---LYDIVRYCLSKRQCRRSAFFHHFAEPL--QECNGMCDIC 473
>gi|339494444|ref|YP_004714737.1| ATP-dependent DNA helicase RecQ [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
gi|338801816|gb|AEJ05648.1| ATP-dependent DNA helicase RecQ [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
Length = 707
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 133/220 (60%), Gaps = 19/220 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ + + Q + + D LVL TG GKSLC+Q+PALL + VV+
Sbjct: 4 QAQRILKDVFGYDAFRGNQGAIIERVGSGGDALVLMPTGGGKSLCYQVPALLREGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVI--RL 274
SPLI+LM DQ + L + GV+A L S ++ + ++ RG ++Y+ PE ++ R+
Sbjct: 64 SPLIALMDDQVATLDELGVSAVALNSTLSTDEQRDIAERIRRGEIKMLYLAPERLVQPRM 123
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ LQRL IALFAIDE HCVS+WGHDFRP+Y +L L E F ++P +
Sbjct: 124 LAFLQRLE----IALFAIDEAHCVSQWGHDFRPEYMQLGQLAELFP---------NVPRI 170
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA + RE+I++ LH+ +F L+SF RPN+ + +
Sbjct: 171 ALTATADKRTREEIVQRLHLENAERF-LSSFDRPNIFYRI 209
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 108/204 (52%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L L E D I+Y +RK+ +A +L G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLGFLAERRGDA-GIVYCMSRKKVDDLAAFLTEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP ++LR H + F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NELRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSS---MPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD + L + +L + +++ K+ + D + CR +
Sbjct: 317 GRAGRDGLPADAWMAYGLQDVIFLKQMLNNSEGDERHKRVEQHKLDAMLALCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF E+ C CD CVDG
Sbjct: 377 ALLAYFDEELPR-PCGHCDNCVDG 399
>gi|301768849|ref|XP_002919837.1| PREDICTED: Bloom syndrome protein-like [Ailuropoda melanoleuca]
gi|281350343|gb|EFB25927.1| hypothetical protein PANDA_008500 [Ailuropoda melanoleuca]
Length = 1423
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 665 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 724
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 725 SLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLI 784
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 785 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 835
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 836 LTATANPRVQKDILTQLKILQPQVFSM-SFNRHNLKYYV 873
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 96/175 (54%), Gaps = 12/175 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVVATIAFGM 574
IIY +R+E ++A L G+ A AY+A L S V H +++ +V+ ATIAFGM
Sbjct: 899 IIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGM 958
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL----LPSRRS 630
GIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L L +
Sbjct: 959 GIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEKEG 1018
Query: 631 EDQTKQAY-RMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL-----CDVC 678
T++ + L Y N + CR L+ YFGE F+ + C+ CD C
Sbjct: 1019 NHHTRETHINNLYSMVHYCENITECRRIQLLAYFGEKGFNPDFCKKYPDVSCDNC 1073
>gi|449471881|ref|XP_004175079.1| PREDICTED: LOW QUALITY PROTEIN: Bloom syndrome protein homolog
[Taeniopygia guttata]
Length = 1069
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 129/220 (58%), Gaps = 18/220 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++ + FG + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 385 NIFHRKFGLHCFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTIVISPL 444
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RL 274
SL+ DQ KL + A +L + D + ++ + ++YV PE V RL
Sbjct: 445 RSLIIDQVQKLKTLDIAATYLTGDRTDADASKIYMQLSKKDPVIKLLYVTPEKVCASNRL 504
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ L+ L + + +A F IDE HCVS+WGHDFR DY+RL++LR FG+ +P+M
Sbjct: 505 MSTLENLYDRKLLARFVIDEAHCVSQWGHDFRQDYKRLNMLRRKFGS---------VPMM 555
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA +V++DIL L M K F + SF R NL++ V
Sbjct: 556 ALTATANPRVQKDILNQLEMLKPQVFTM-SFNRHNLKYDV 594
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 96/175 (54%), Gaps = 12/175 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVVATIAFGM 574
IIY +R E + A L G+ A AY+A L S V ++ ++ +V+ ATIAFGM
Sbjct: 620 IIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQQKWVNQEGCQVICATIAFGM 679
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL----LPSRRS 630
GIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + S + L L +
Sbjct: 680 GIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDG 739
Query: 631 EDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGE-DFSHEKCQ-----LCDVC 678
T+Q + L Y N CR L+ YFGE +F+ C+ +CD C
Sbjct: 740 NSHTRQTHFNNLYSMVHYCENVVECRRVQLLAYFGETNFNPTFCKDHPEVICDNC 794
>gi|407936912|ref|YP_006852553.1| ATP-dependent DNA helicase RecQ [Acidovorax sp. KKS102]
gi|407894706|gb|AFU43915.1| ATP-dependent DNA helicase RecQ [Acidovorax sp. KKS102]
Length = 612
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 126/219 (57%), Gaps = 19/219 (8%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVISPLIS 224
FG+ + Q+ + +A D LVL TG GKSLC+Q+PA++ + V +V+SPLI+
Sbjct: 5 FGYEEFRGPQQAIVEHVIAGSDALVLMPTGGGKSLCYQVPAIVRQQQGRGVTIVVSPLIA 64
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR---GMYSIIYVCPE--TVIRLIKPLQ 279
LMHDQ L + GV+A FL S ++ + LR G +++Y PE R + L
Sbjct: 65 LMHDQVGALHEAGVSAAFLNSTLSYDETQDVELRLQTGDITLLYAAPERLNTPRFLGLLD 124
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L ++LFAIDE HCVS+WGHDFRP+YR L+VL E + +P +ALTAT
Sbjct: 125 SLYHGGHLSLFAIDEAHCVSQWGHDFRPEYRALTVLHERYAG---------VPRIALTAT 175
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
A R DI++ L + FV +SF RPN+R+ ++ K
Sbjct: 176 ADALTRADIVERLQLEGAQHFV-SSFDRPNIRYRIEEKK 213
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 102/203 (50%), Gaps = 6/203 (2%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
A+ L ++ + ++Y +RK ++ L G+K+ Y+A LP ++ F
Sbjct: 217 AQLLRFIEREHPEDAGVVYCQSRKRVEEMSAALVDAGLKSLPYHAGLPAEVRQQNQDRFL 276
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619
+ V+VATIAFGMGIDK +VR + H P+++E YYQE GRAGRDG AD + L
Sbjct: 277 REEGIVMVATIAFGMGIDKPDVRFVAHVDMPKNIEGYYQETGRAGRDGLNADAWMAYGLQ 336
Query: 620 SMPT---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCD 676
+ ++ + ++ KQ R D + CR L+ YFGE + C CD
Sbjct: 337 DVVNQRRMIDESPASEEFKQVMRGKLDALLALAEATDCRRVRLLGYFGEHST--PCGNCD 394
Query: 677 VCVDGPPEMKNLKEEANILMQVI 699
C++ PP + + + A L+ I
Sbjct: 395 NCLN-PPAVWDGTDAARKLLSTI 416
>gi|410632491|ref|ZP_11343149.1| ATP-dependent DNA helicase RecQ [Glaciecola arctica BSs20135]
gi|410147917|dbj|GAC20016.1| ATP-dependent DNA helicase RecQ [Glaciecola arctica BSs20135]
Length = 594
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 132/235 (56%), Gaps = 21/235 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK+ FG+ ++ Q + +S L D LVL TG GKSLC+QIPA+L + +V+
Sbjct: 3 QAQHILKQTFGYDHFRDGQAQVISQVLQQKDVLVLMPTGGGKSLCYQIPAMLLPGLTIVV 62
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRL-- 274
SPLISLM DQ L +GV A ++ S Q V + G Y +IYV PE +++L
Sbjct: 63 SPLISLMKDQVDALLTYGVNAAYINSNLSPQEMFNVYKSMQDGKYKLIYVAPERLMQLEF 122
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
I LQ L ++L A+DE HCVS WGHDFR DYR L L+ F +IP+M
Sbjct: 123 IHRLQGLT----VSLIAVDEAHCVSHWGHDFRKDYRLLGQLKATFP---------NIPIM 169
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFS--VKHSKTSSRASYKK 387
LTATA + R DI + L++ + F SF RPN+R++ K+ T ++ K
Sbjct: 170 GLTATADLATRADITQQLNLQQPFIFK-GSFDRPNIRYNQVTKYKATDQAIAFVK 223
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 5/175 (2%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
++G IIY +R++ ++ L GV A Y+A L ++ +F ++K++++VAT+
Sbjct: 225 QEGSGIIYCNSRRKVDDLSIALAKHGVNCAGYHAGLEGEIRDKIQRDFIQDKIDIIVATV 284
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPS 627
AFGMGIDK NVR ++H+ P+S+E+YYQE GRAGRDG A+ +L + + + + +
Sbjct: 285 AFGMGIDKSNVRFVVHFDLPRSIESYYQEIGRAGRDGMPAEALLLFDEKDAARIRQWIST 344
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
+ + + + +G CR +IL+ YF E +S C CD+C+D P
Sbjct: 345 GENPQRNNVELQKFAAMEAFG-EAQTCRRQILLNYFAE-YSAGHCGNCDICLDPP 397
>gi|388256112|ref|ZP_10133293.1| ATP-dependent DNA helicase RecQ [Cellvibrio sp. BR]
gi|387939812|gb|EIK46362.1| ATP-dependent DNA helicase RecQ [Cellvibrio sp. BR]
Length = 601
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 125/216 (57%), Gaps = 17/216 (7%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++L FG+ + Q + A +A D LVL TG GKSLC+QIPAL+ V +V+SPL
Sbjct: 6 AILNSTFGYHEFRGPQAAVIDALVAGEDVLVLMPTGGGKSLCYQIPALVREGVGIVVSPL 65
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL---RGMYSIIYVCPETVIRLIKPLQ 279
I+LM DQ S L + GV A FL S ++ Q L RG ++YV PE RLI+P
Sbjct: 66 IALMQDQVSALRELGVRAGFLNSSLSPQEMWQTELALQRGELDMLYVAPE---RLIQPRT 122
Query: 280 -RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L I+LFAIDE HCVS+WGHDFR DY +L +L F +P +ALTA
Sbjct: 123 LELFHQIKISLFAIDEAHCVSQWGHDFRSDYLKLELLHREFP---------QVPRIALTA 173
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA ++ R++I+ L + +F+ F RPN+++ +
Sbjct: 174 TADVRTRDEIIARLQLENAQQFI-NGFDRPNIQYRI 208
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 129/279 (46%), Gaps = 26/279 (9%)
Query: 497 NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHT 556
N + + L+E I+Y +R + IA++L A Y+A LP + ++
Sbjct: 213 NPKIQLMRFLREEQAGNSGIVYCLSRNKVEQIAEWLSSEKFTALPYHAGLPANVRQKNQE 272
Query: 557 EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616
F ++VATIAFGMGIDK +VR + H P+S+EAYYQE GRAGRDG A +L
Sbjct: 273 RFLREDNIIMVATIAFGMGIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGEPATTLLLY 332
Query: 617 NLSSMPTLLPS----------RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGED 666
L + L +R+E Q A ML C + CR + L+ YFG+
Sbjct: 333 GLEDVVKLRQMMAQSEGSEEFKRNEQQRLNA--MLGLC-----EITSCRRQSLLRYFGDT 385
Query: 667 FSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMD 726
+ + C CD C+ PP+ + E + + + ++ + D + G +K +
Sbjct: 386 LA-QPCGNCDCCIT-PPQTWDATEAVQMALSCVYRTGQRFGAGHVID-VLRGSNNEKILS 442
Query: 727 RPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYI 765
+ K+ I K+L+ D W+ + R + +G +
Sbjct: 443 FDHHKLTTYGI----GKHLSAD--EWKAIFRQLVARGLL 475
>gi|284006614|emb|CBA71875.1| ATP-dependent DNA helicase [Arsenophonus nasoniae]
Length = 608
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 131/214 (61%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L++ FG+ + Q++ ++ L DCLV+ TG GKSLC+QIPAL+ + +V+SPLI
Sbjct: 16 VLQQIFGYQQFRPGQEQIINTILTKQDCLVVMPTGGGKSLCYQIPALILPGLTIVVSPLI 75
Query: 224 SLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +LS++G+ A +L S GQ +V + +G ++Y+ PE ++ + L R
Sbjct: 76 SLMKDQVDQLSQYGIEASYLNSSQTGQQQKQVIEYCRQGKIKLLYIAPERLV-MDNFLDR 134
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L + + L A+DE HC+S+WGHDFRP+YR L LR F +P++ALTATA
Sbjct: 135 LPKLNPV-LLAVDEAHCISQWGHDFRPEYRALGQLRRRFS---------QLPVIALTATA 184
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
R DI+ L + + + +SF RPN+R+++
Sbjct: 185 DQTTRNDIIHGLELCEPLVHI-SSFDRPNIRYTL 217
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 112/201 (55%), Gaps = 5/201 (2%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP ++L + + I+Y +R + A+ L G+ AAAY+A L +Q +V
Sbjct: 222 KPLDQLWFFIKGQKGNSGIVYCNSRSKAEETAERLHKRGLSAAAYHAGLDNTQRAKVQDA 281
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F ++ L+VVVAT+AFGMGI+K NVR ++H+ +++E+YYQE GRAGRDG A+ +L+
Sbjct: 282 FQKDDLQVVVATVAFGMGINKSNVRFVVHFDIARNIESYYQETGRAGRDGLAAEAILFYD 341
Query: 616 -ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL 674
A+LS + L + + Q ++ R + CR +L+ YFGE+ + C
Sbjct: 342 PADLSWLRRCL-AEKPAGQLQEIERHKLNAMSAFAEAQTCRRLVLLNYFGEN-RQQPCGN 399
Query: 675 CDVCVDGPPEMKNLKEEANIL 695
CD+C+D P L + +L
Sbjct: 400 CDICLDPPKRYDGLIDAQKVL 420
>gi|257092149|ref|YP_003165790.1| ATP-dependent DNA helicase RecQ [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257044673|gb|ACV33861.1| ATP-dependent DNA helicase RecQ [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 604
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 127/224 (56%), Gaps = 15/224 (6%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L++ FG+ + + Q + + D LVL TG GKSLC+QIPALL V VV+SPLI
Sbjct: 8 ILRRVFGYPAFRGEQAAIVDQIVGGGDALVLMPTGGGKSLCYQIPALLRPGVGVVVSPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ L + GV A +L S V E++ G +IYV PE ++ R I L
Sbjct: 68 ALMQDQVDALRQVGVQAAYLNSSLDFRAVVDTERRLQAGELDLIYVAPERLLTDRFIGLL 127
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
++L ++LFAIDE HCVS+WGHDFRP+Y +LS L E F IP +ALTA
Sbjct: 128 EQLIARDQVSLFAIDEAHCVSQWGHDFRPEYIQLSQLHERFPG---------IPRIALTA 178
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
TA R++I+ L + FV SF RPN+R+++ R
Sbjct: 179 TADQLTRQEIVSRLSLEDARLFV-ASFDRPNIRYTIVERDNPRR 221
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 96/179 (53%), Gaps = 23/179 (12%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ A +L GV A Y+A L + +R F V+VATIAFGMG
Sbjct: 236 IVYCLSRRKVDETAAWLNAQGVTALPYHAGLAAADRQRHQQRFLREDGVVMVATIAFGMG 295
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGH---------LADCVLYANL---SSMPT 623
IDK +VR + H P+SLEAYYQE GRAGRDG L D V++ + S+ P
Sbjct: 296 IDKPDVRFVAHLDLPRSLEAYYQETGRAGRDGEASEAWMTYGLNDVVIHRQMIEDSAAP- 354
Query: 624 LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
+ +R E Q + ML+ C ++ CR +L+ YFGE + C CDVC+D P
Sbjct: 355 -VEQKRVERQKLDS--MLAYC-----ESARCRRVVLLNYFGE--ATTPCGNCDVCLDPP 403
>gi|146282808|ref|YP_001172961.1| ATP-dependent DNA helicase RecQ [Pseudomonas stutzeri A1501]
gi|145571013|gb|ABP80119.1| ATP-dependent DNA helicase RecQ [Pseudomonas stutzeri A1501]
Length = 707
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 133/220 (60%), Gaps = 19/220 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ + + Q + + D LVL TG GKSLC+Q+PALL + VV+
Sbjct: 4 QAQRILKDVFGYDAFRGNQGAIIERVGSGGDALVLMPTGGGKSLCYQVPALLREGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVI--RL 274
SPLI+LM DQ + L + GV+A L S ++ + ++ RG ++Y+ PE ++ R+
Sbjct: 64 SPLIALMDDQVATLDELGVSAVALNSTLSTDEQRDIAERIRRGEIKMLYLAPERLVQPRM 123
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ LQRL IALFAIDE HCVS+WGHDFRP+Y +L L E F ++P +
Sbjct: 124 LAFLQRLE----IALFAIDEAHCVSQWGHDFRPEYMQLGQLAELFP---------NVPRI 170
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA + RE+I++ LH+ +F L+SF RPN+ + +
Sbjct: 171 ALTATADKRTREEIVQRLHLENAERF-LSSFDRPNIFYRI 209
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 94/170 (55%), Gaps = 6/170 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
I+Y +RK+ +A +L G A Y+A LP ++LR H + F + ++VATIAFGM
Sbjct: 232 IVYCMSRKKVDDLAAFLTEQGFPALPYHAGLP-NELRAYHQKRFLNEEGLIMVATIAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS---MPTLLPSRRSE 631
GIDK NVR + H P+SLEAYYQE GRAGRDG AD + L + +L + +
Sbjct: 291 GIDKPNVRFVAHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVIFLKQMLNNSEGD 350
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
++ K+ + D + CR + L+ YF E+ C CD CVDG
Sbjct: 351 ERHKRVEQHKLDAMLALCEETRCRRQALLAYFDEELPR-PCGHCDNCVDG 399
>gi|295102057|emb|CBK99602.1| ATP-dependent DNA helicase, RecQ family [Faecalibacterium
prausnitzii L2-6]
Length = 525
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 130/225 (57%), Gaps = 16/225 (7%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+S+LKK FG+ S + Q++ + L D L + TG+GKS+C+Q+PALL + +V+SP
Sbjct: 5 HSILKKVFGYDSFRPGQEDIVRRLLDGQDVLAVMPTGAGKSICYQVPALLLPGITIVVSP 64
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKP- 277
L+SLM DQ L + GV A FL + DN+ + ++A G Y IIYV PE RL P
Sbjct: 65 LVSLMKDQVGALVQAGVAAAFLNNSLTDNQKALMLRRAREGWYKIIYVAPE---RLEMPG 121
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
QR A+ + I++ +DE HC+S+WG DFRP Y R+ + SL + A T
Sbjct: 122 FQRFAQEKLISMVTVDEAHCISQWGQDFRPSYLRIKAF--------VDSLPNRPVVGAFT 173
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
ATAT +VR+DI L + + + V T F RPNL F + + S +
Sbjct: 174 ATATARVRDDIRSHLELRQPYE-VTTGFDRPNLYFETRRALPSQK 217
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 107/197 (54%), Gaps = 18/197 (9%)
Query: 497 NKPAERLSM-LQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH 555
KP E L + L+E D I+Y T K+ A+ L G++AAAY+A L R+
Sbjct: 216 QKPKELLDLVLRE--GDNAGIVYCSTTKQVDETARLLQSRGIRAAAYHAKLDAEVRRKNQ 273
Query: 556 TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
+F ++++++VAT AFGMGIDK NVR +IHY P+ LE+YYQEAGRAGRDG + C+L
Sbjct: 274 DDFLYDRIQIMVATNAFGMGIDKPNVRFVIHYNMPKDLESYYQEAGRAGRDGLPSRCILL 333
Query: 616 ANLSSMPTL-------------LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEY 662
+ + + T+ LP+ + ++A L Y C R + ++ Y
Sbjct: 334 YSGTDVRTIRFFIDKEVEADNGLPADVKAEAARKAEERLRYMTFYSTTQKCLR-RFMLNY 392
Query: 663 FGEDFSHEKCQLCDVCV 679
FGE + EKC C C+
Sbjct: 393 FGEA-APEKCGNCSCCL 408
>gi|409397559|ref|ZP_11248426.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. Chol1]
gi|409118014|gb|EKM94439.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. Chol1]
Length = 708
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 129/220 (58%), Gaps = 19/220 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ + + Q + D LVL TG GKSLC+Q+PALL + VV+
Sbjct: 4 QAQRILKDVFGYDAFRGNQGAIIEQVAGGGDALVLMPTGGGKSLCYQVPALLRDGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVI--RL 274
SPLI+LM DQ + L + GV A L S ++ ++ R ++Y+ PE ++ R+
Sbjct: 64 SPLIALMDDQVATLDELGVAAVALNSTLSADEQREIAERIRRNEIKLLYLAPERLVQPRM 123
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ LQRL IALFAIDE HCVS+WGHDFRP+Y +L L E F +P +
Sbjct: 124 LAFLQRLQ----IALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPG---------VPRI 170
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA ++ RE+I++ LH+ +F L+SF RPN+ + +
Sbjct: 171 ALTATADMRTREEIVQRLHLEHAERF-LSSFDRPNIFYRI 209
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 478 HSPHRDRDTDRSFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAK 530
H H +R SF+R ++ + P E+ L L E D I+Y +RK+ +A
Sbjct: 189 HLEHAERFLS-SFDRPNIFYRIVPKEQPRKQLLGFLAERRGDA-GIVYCMSRKKVDDLAA 246
Query: 531 YLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGW 589
+L G A Y+A LP ++LR H + F + ++VATIAFGMGIDK NVR + H
Sbjct: 247 FLTEQGFPALPYHAGLP-NELRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDL 305
Query: 590 PQSLEAYYQEAGRAGRDGHLADCVLYANLSS---MPTLLPSRRSEDQTKQAYRMLSDCFR 646
P+SLEAYYQE GRAGRDG AD + L + +L + +++ K+ + D
Sbjct: 306 PKSLEAYYQETGRAGRDGLPADAWMAYGLQDVIFLKQMLNNSEGDERHKRIEQHKLDAML 365
Query: 647 YGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVD 680
+ CR ++L+ YF ED + C CD CVD
Sbjct: 366 ALCEETRCRRQVLLAYFDEDLP-QPCGHCDNCVD 398
>gi|289208024|ref|YP_003460090.1| ATP-dependent DNA helicase RecQ [Thioalkalivibrio sp. K90mix]
gi|288943655|gb|ADC71354.1| ATP-dependent DNA helicase RecQ [Thioalkalivibrio sp. K90mix]
Length = 626
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 138/236 (58%), Gaps = 21/236 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L++ FG+S + Q+ + A D +VL TG GKSLC+QIPAL VVISPLI
Sbjct: 23 ILRETFGYSDFRGQQQAVIEHVTAGGDAVVLMPTGGGKSLCYQIPALARPGCAVVISPLI 82
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS----IIYVCPETVIR--LIKP 277
+LM DQ + L ++GV A L SGQ + + + L +++ ++Y+ PE + +++
Sbjct: 83 ALMQDQVAALRQNGVAAASLDSGQ-NAETARGVLAALHAGELDLLYLSPERLFASGMLER 141
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
LQ + +ALFAIDE HCVS+WGHDFRP+Y +L+VL E+F D+P MALT
Sbjct: 142 LQGIE----LALFAIDEAHCVSQWGHDFRPEYGQLAVLAEHFP---------DVPRMALT 188
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLI 393
ATA R++I + L + + F+ +SF RPN+R+ V + + + + I
Sbjct: 189 ATADGPTRQEIRERLRLEQARAFI-SSFDRPNIRYRVAQADGGRGGAPRDRLLRFI 243
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 122/264 (46%), Gaps = 24/264 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+ ++A++L GV A Y+A L T F + V+VATIAFGMG
Sbjct: 253 IVYCLSRKKVDAVAEWLAEQGVPALPYHAGLSARTRAENQTRFLREEGVVMVATIAFGMG 312
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL---------P 626
IDK NVR + H P+SLE YYQE GRAGRDG A+ + L + TL P
Sbjct: 313 IDKPNVRFVAHMNLPKSLEGYYQETGRAGRDGLPANAWMVYGLQDVVTLRQMLEGSQAGP 372
Query: 627 SRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMK 686
R+ +Q K ML C + CR + L+ YF E E C CD C D PP
Sbjct: 373 ERQRIEQQKLDA-MLGFC-----EITSCRRQALLAYFDEHMP-EPCGTCDNCTD-PPATW 424
Query: 687 NLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLA 746
+ L+ I E+ + D + G ++ + ++ I +
Sbjct: 425 DASVPVQKLLSCIYRTGERFGAGHVID-VLRGSSSERLQRLGHDRLSTYGIGAE------ 477
Query: 747 TDLLWWRGLARIMENKGYIREGDD 770
D + WRG+ R + +G +R D+
Sbjct: 478 LDKMQWRGVVRQLLARGLLRLDDE 501
>gi|452965349|gb|EME70373.1| superfamily II DNA helicase [Magnetospirillum sp. SO-1]
Length = 614
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 133/224 (59%), Gaps = 20/224 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG + + Q E + +A D LVL TG+GKSLC+Q+PAL V VV+SPLI
Sbjct: 12 ILNSVFGFPAFRGQQAEVIEHVVAGGDALVLMPTGAGKSLCYQVPALCRDGVAVVVSPLI 71
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKP--L 278
+LM +Q L++ GV A L S + ++V E++ G ++YV PE RL+ P L
Sbjct: 72 ALMQNQVEALNQLGVRAAALNSARSLDEVRVIERRMRAGELDLVYVAPE---RLVLPGFL 128
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L E R IALFAIDE HCVS+WGHDFRP+Y +L++L E F +P +ALTA
Sbjct: 129 ALLDECR-IALFAIDEAHCVSQWGHDFRPEYLQLALLHERFP---------HVPRIALTA 178
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
TA R DI + L++ G FV F RPN+R+ + +K ++R
Sbjct: 179 TADGPTRRDIAERLNLGDGRHFV-AGFDRPNIRYRIA-AKNNAR 220
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 4/168 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R + A +L G G A AY+A L + F V+VATIAFGMG
Sbjct: 240 IVYCLSRAKVEETASWLAGKGYTALAYHAGLDQPVRAANQERFLREDGIVMVATIAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSED 632
IDK +VR + H P+SLEAYYQE GRAGRDG AD + L + L + S S D
Sbjct: 300 IDKPDVRFVAHLDLPKSLEAYYQETGRAGRDGMPADAWMAYGLEDVAKLGQFIASSPSSD 359
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVD 680
K+ R + T+ CR ++L+EYFGE + C CD C++
Sbjct: 360 AQKRIERGKLNALLGLCETARCRRQVLLEYFGETGAG-PCGNCDTCLE 406
>gi|255932597|ref|XP_002557855.1| Pc12g10330 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582474|emb|CAP80660.1| Pc12g10330 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1511
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 132/233 (56%), Gaps = 25/233 (10%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK-- 214
W +V +LK+ F + Q EA+ A LA D +L TG GKSLC+Q+P+++TG
Sbjct: 631 WSQEVRKVLKERFHLRGFRPNQLEAIDATLAGKDTFILMPTGGGKSLCYQLPSVVTGGRT 690
Query: 215 --VVVVISPLISLMHDQCSKLSKHGVTACFL-GSGQPDNK------VEQKALRGMYSIIY 265
V +VISPL+SLM DQ S L K + A + G P+ K + A GM ++Y
Sbjct: 691 TGVTIVISPLLSLMEDQVSHLRKLNIKAFMVNGDTNPEEKSWIMSQLSNAAGEGM-EVLY 749
Query: 266 VCPETVIR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGAN 322
+ PE + + LI+ L++L +A IDE HCVS+WGHDFRPDY+ L +R F
Sbjct: 750 ITPEMLSKSQALIRALEKLHGRNRLARLVIDEAHCVSQWGHDFRPDYKELGEVRARFPG- 808
Query: 323 NLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+P+MALTATAT V+ D++ +L ++ F L SF RPNL + V+
Sbjct: 809 --------VPVMALTATATENVKVDVMHNLKITDCEVF-LQSFNRPNLTYEVR 852
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 105/197 (53%), Gaps = 13/197 (6%)
Query: 516 IIYVPTRKETLSIAKYLCG-FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
IIY +RK +A+ L + +KA AY+A + ++ ++ ++VATIAFGM
Sbjct: 878 IIYCLSRKTCDKVAEDLQKKYHLKALAYHAGMSAKVKSEAQRKWQMGRVHIIVATIAFGM 937
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSED-- 632
GIDK +VR ++H+ P+SLE YYQE GRAGRDG + C LY TL +R D
Sbjct: 938 GIDKADVRFVMHHSIPKSLEGYYQETGRAGRDGKRSGCYLYFGYKDTATL---KRMIDAG 994
Query: 633 -----QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-QLCDVC-VDGPPEM 685
Q + +ML + +Y N S CR ++ YF E F E C CD C D E+
Sbjct: 995 DGNGQQKARQKQMLRNVVQYCENRSDCRRVQVLAYFAEYFRREDCNNTCDNCKSDLVFEL 1054
Query: 686 KNLKEEANILMQVIAAY 702
+ E+A+ ++++ +
Sbjct: 1055 HDFTEQASWAIKIVRQF 1071
>gi|254508582|ref|ZP_05120699.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus 16]
gi|219548524|gb|EED25532.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus 16]
Length = 611
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 148/256 (57%), Gaps = 24/256 (9%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
S+L++ FG+ + ++ Q+E + + +A D LV+ TG GKSLC+QIPAL+ + +VISP
Sbjct: 17 QSVLEEVFGYQTFRDGQREVIESAVAGQDSLVIMPTGGGKSLCYQIPALVRSGLTLVISP 76
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIR--LIK 276
LISLM DQ +L +GV A + S P + V + G+ ++YV PE V+ I+
Sbjct: 77 LISLMKDQVDQLKANGVAAECINSTMPREELIAVYNRMNAGVTKLVYVSPERVLMRDFIE 136
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
LQ L +++ A+DE HC+S+WGHDFRP+Y L L++ F +P+MAL
Sbjct: 137 RLQGLP----LSMIAVDEAHCISQWGHDFRPEYASLGQLKQAFS---------HVPVMAL 183
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---KKDFCQ 391
TATA R+DI++ L ++ + L SF RPN+R+++ KH S + ++ C
Sbjct: 184 TATADDATRKDIMQRLQLNDPHTY-LGSFDRPNIRYTLVEKHKPVSQVVRFLEGQRGQCG 242
Query: 392 LIDIYTKKKKTGEKEK 407
+I ++KK EK
Sbjct: 243 IIYCGSRKKVEMVTEK 258
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 123/225 (54%), Gaps = 12/225 (5%)
Query: 489 SFERTDLL------NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ +KP ++ E IIY +RK+ + + LC G++AA+Y
Sbjct: 210 SFDRPNIRYTLVEKHKPVSQVVRFLEGQRGQCGIIYCGSRKKVEMVTEKLCNNGLRAASY 269
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L + V F + L++VVAT+AFGMGI+K NVR ++H+ P+++E+YYQE GR
Sbjct: 270 HAGLDADERAYVQDAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGR 329
Query: 603 AGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A+ ++ A++ + +L + Q + L+ + CR ++L
Sbjct: 330 AGRDGLPAEAMMLYDPADIGWLRRMLDEKDDGPQKQVEAHKLNAMSAFA-EAQTCRRQVL 388
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNE 704
+ YFGE + + C CD+C+D PP+ + E+A + + N+
Sbjct: 389 LNYFGE-YREQPCGNCDICLD-PPKHFDATEQAQKALSCVYRVNQ 431
>gi|406983517|gb|EKE04701.1| hypothetical protein ACD_20C00021G0003 [uncultured bacterium]
Length = 608
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 124/215 (57%), Gaps = 17/215 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ +N Q E + + +D L+L TG GKSLC+QIPAL V +V+SPLI
Sbjct: 12 ILHSIFGYEHFRNQQAEIIDHIINGNDALILMPTGGGKSLCYQIPALCLPGVTIVVSPLI 71
Query: 224 SLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRL-IKPLQ 279
+LM DQ L + G++A L S + ++VE+K G IIYV PE RL +
Sbjct: 72 ALMQDQVESLKQLGISASVLNSTLSARESSEVEEKMRNGELDIIYVSPE---RLNTESFL 128
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
E +ALFAIDE HCVS+WGHDFRP+Y S L+ F +P +ALTAT
Sbjct: 129 NNIEQCELALFAIDEAHCVSQWGHDFRPEYLEFSNLKNRFP---------HVPRIALTAT 179
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
A R+DI+K L + G F+ +SF RPN+R+ +
Sbjct: 180 ADELTRQDIIKHLGLENGRTFI-SSFDRPNIRYRI 213
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 109/200 (54%), Gaps = 8/200 (4%)
Query: 487 DRSFERTDLLNKPAER---LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYN 543
DR R ++ K E+ L+ L E + I+Y +R + + IAKYL G A Y+
Sbjct: 205 DRPNIRYRIMTKDNEKKQLLNFLNEEHKGDSGIVYCISRDKVMEIAKYLKENGYDALPYH 264
Query: 544 ASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRA 603
A L K + + F ++ V+VATIAFGMGI+K +VR + H P+S+E+YYQE GRA
Sbjct: 265 AGLNKDKRMKNQDRFIKDDGVVMVATIAFGMGINKPDVRFVAHLDLPKSVESYYQETGRA 324
Query: 604 GRDGHLADCVLYANLSSMPTL----LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
GRDG +D + + + L + S+ + + Y+ L Y + T CR ++L
Sbjct: 325 GRDGLPSDAWMVYGIEDIVKLQQFIIRSKANAEHKMLEYQKLDALLGY-VETVKCRRQVL 383
Query: 660 VEYFGEDFSHEKCQLCDVCV 679
+EYFGE ++ C+ CD C+
Sbjct: 384 LEYFGEKTENKSCENCDTCL 403
>gi|123494887|ref|XP_001326616.1| ATP-dependent DNA helicase, RecQ family protein [Trichomonas
vaginalis G3]
gi|121909533|gb|EAY14393.1| ATP-dependent DNA helicase, RecQ family protein [Trichomonas
vaginalis G3]
Length = 1447
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 136/242 (56%), Gaps = 22/242 (9%)
Query: 150 EVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPA 209
+V I E K+N + KK F HS + Q++A++A L D VL TG GKSLC+Q+P
Sbjct: 343 QVSISPALETKINEVNKKVFKHSHFRGRQRDAIAAALNGEDVFVLMPTGGGKSLCYQLPG 402
Query: 210 LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYV 266
+ V +VISPLISL+ DQ L++ G+ A G + N++ +K G +++
Sbjct: 403 FIQMGVTIVISPLISLIQDQVRSLTELGLDAMAYGQETTAADYNEIVRKINNGRLRFLFM 462
Query: 267 CPETVI------RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFG 320
PE ++ R I + E + + F ID+ HCVS+WGHDFRPDY +L V
Sbjct: 463 TPEKIMMGSINTRFIG---SIYEKKRLTRFVIDKAHCVSQWGHDFRPDYTQLGV------ 513
Query: 321 ANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380
LK++ DIP+MALTATAT V+ DI + L++ + +SF RPN+ + V + +
Sbjct: 514 ---LKTMYPDIPIMALTATATDAVQRDIKEILNI-RNCHVFKSSFNRPNIFYEVIQKEEN 569
Query: 381 SR 382
S+
Sbjct: 570 SK 571
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 106/178 (59%), Gaps = 10/178 (5%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
E+ II+ T ET+++++Y+ G A Y+ + + ++V + N++ V+VAT+
Sbjct: 584 ENSTGIIFCMTTPETVNLSQYMNTKGFNTAYYHGKMENADRKKVQEMWMNNQIRVIVATL 643
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL---SSMPTLLPS 627
AFGMGIDK +VR +IH P+SLEAYYQE+GRAGRDG + C+L+ ++ + + L+
Sbjct: 644 AFGMGIDKPDVRYVIHMTMPRSLEAYYQESGRAGRDGKQSHCLLFFSMGDKARVHRLISY 703
Query: 628 RRSEDQTKQAYR------MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL-CDVC 678
SE+Q K R +L YG++ + CR +L+ YFGE F + C + CD C
Sbjct: 704 TESEEQIKNKDRLEVEENLLEHMAEYGLDKTTCRRVLLLSYFGEQFDPDNCGMTCDNC 761
>gi|221040662|dbj|BAH12008.1| unnamed protein product [Homo sapiens]
Length = 1047
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V VVISPL
Sbjct: 311 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLR 370
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE + RLI
Sbjct: 371 SLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLI 430
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 431 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 481
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 482 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 519
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 11/126 (8%)
Query: 564 EVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT 623
+V+ ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ +
Sbjct: 571 QVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTR 630
Query: 624 L----LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL--- 674
L + + T++ + L Y N + CR L+ YFGE+ F+ + C+
Sbjct: 631 LKRLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPD 690
Query: 675 --CDVC 678
CD C
Sbjct: 691 VSCDNC 696
>gi|403258502|ref|XP_003921799.1| PREDICTED: Bloom syndrome protein [Saimiri boliviensis boliviensis]
Length = 1499
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 657 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 716
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE + RL+
Sbjct: 717 SLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLV 776
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 777 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 827
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 828 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 865
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 99/182 (54%), Gaps = 14/182 (7%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVV 567
P + G IIY +R+E ++A L G+ A AY+A L S V ++ +++ +V+
Sbjct: 886 PYDSG--IIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVIC 943
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--- 624
ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L
Sbjct: 944 ATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRL 1003
Query: 625 -LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGE-----DFSHEKCQL-CD 676
+ + T++ + L Y N + CR L+ YFGE DF E + CD
Sbjct: 1004 IMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKEHPDVSCD 1063
Query: 677 VC 678
C
Sbjct: 1064 NC 1065
>gi|336122927|ref|YP_004564975.1| RecQ [Vibrio anguillarum 775]
gi|335340650|gb|AEH31933.1| RecQ [Vibrio anguillarum 775]
Length = 619
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/256 (39%), Positives = 142/256 (55%), Gaps = 24/256 (9%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+S+L+ FG+ S + Q+E + A LA D LV+ TG GKSLC+QIPAL+ + +VISP
Sbjct: 25 HSILQTVFGYQSFRVGQQEVIDASLAGQDSLVIMPTGGGKSLCYQIPALVKEGITLVISP 84
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIR--LIK 276
LISLM DQ +L +GV A + S V + G +IY PE V+ I+
Sbjct: 85 LISLMKDQVDQLKANGVAAECINSSMSREMLMSVYNRMNAGQLKLIYASPERVLMSDFIE 144
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
LQ+L +A+ A+DE HC+S+WGHDFRP+Y L L+++F +P MAL
Sbjct: 145 RLQQLP----LAMIAVDEAHCISQWGHDFRPEYAALGQLKQHFS---------HVPFMAL 191
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---KKDFCQ 391
TATA R DIL L + + + L SF RPN+R+++ KH S Y ++ C
Sbjct: 192 TATADDATRVDILHRLQLQEPHVY-LGSFDRPNIRYTLVEKHKPVSQVIRYLDTQRGHCG 250
Query: 392 LIDIYTKKKKTGEKEK 407
+I ++KK EK
Sbjct: 251 IIYCGSRKKVEMLTEK 266
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 140/262 (53%), Gaps = 19/262 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ + + LC ++AA+Y+A + + V F + +++VVAT+AFGMG
Sbjct: 251 IIYCGSRKKVEMLTEKLCNNHLRAASYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMG 310
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ ++ + + + L RR D+
Sbjct: 311 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWL---RRMLDEKP 367
Query: 636 QAYRMLSDCFRYGMNTS-----CCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKE 690
+ + + + G ++ CR ++L+ YFGE + + C CD+C+D PP+ + +
Sbjct: 368 EGPQKQVESHKLGAMSAFAEAQTCRRQVLLNYFGE-YRDKPCGNCDICLD-PPKHFDATQ 425
Query: 691 EANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDL 749
EA + + N QS + + G++ + + + K+ I R+ S Y
Sbjct: 426 EAQKALSCVYRVN-QSFGIGYVVEVMRGMQNIRIRENGHDKLTTYGIGRDHSHDY----- 479
Query: 750 LWWRGLARIMENKGYIREGDDR 771
W + R + +KG +++ R
Sbjct: 480 --WVSIFRQLIHKGLLQQNITR 499
>gi|219518767|gb|AAI43281.1| BLM protein [Homo sapiens]
Length = 1042
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V VVISPL
Sbjct: 283 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLR 342
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE + RLI
Sbjct: 343 SLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLI 402
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 403 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 453
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 454 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 491
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 101/184 (54%), Gaps = 14/184 (7%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEV 565
P + G IIY +R+E ++A L G+ A AY+A L S V ++ +++ +V
Sbjct: 510 HHPYDSG--IIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQV 567
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL- 624
+ ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L
Sbjct: 568 ICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLK 627
Query: 625 ---LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL----- 674
+ + T++ + L Y N + CR L+ YFGE+ F+ + C+
Sbjct: 628 RLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVS 687
Query: 675 CDVC 678
CD C
Sbjct: 688 CDNC 691
>gi|395502424|ref|XP_003755581.1| PREDICTED: Bloom syndrome protein [Sarcophilus harrisii]
Length = 1445
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + Q EA++A L DC VL TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 692 IFHKKFGLHHFRTNQLEAINAVLLGEDCFVLMPTGGGKSLCYQLPACVSPGVTIVISPLR 751
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 752 SLIIDQVQKLTSLDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLI 811
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+RL++LR F + + +MA
Sbjct: 812 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRLNMLRHKFPS---------VSMMA 862
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + F + SF R NL++SV
Sbjct: 863 LTATANPRVQKDILTQLKILNPQVFSM-SFNRHNLKYSV 900
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 95/175 (54%), Gaps = 12/175 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVVATIAFGM 574
IIY +R+E ++A L G+ A AY+A L S V H +++ +V+ ATIAFGM
Sbjct: 926 IIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGM 985
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL----LPSRRS 630
GIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ N + L L +
Sbjct: 986 GIDKPDVRYVIHSSLPKSVEGYYQESGRAGRDGEMSHCLLFYNYHDVTRLKRLILMEKDG 1045
Query: 631 EDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQ-----LCDVC 678
T+Q + L Y N CR L+ YFGE F+ C+ CD C
Sbjct: 1046 NSHTRQTHFNNLYSMVHYCENIIECRRIQLLSYFGESGFNPNFCKEYPDVTCDNC 1100
>gi|291410501|ref|XP_002721547.1| PREDICTED: Bloom syndrome protein [Oryctolagus cuniculus]
Length = 1414
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 660 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACISPGVTIVISPLR 719
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 720 SLIVDQVQKLTSLDIPATYLTGDKTDSEAASIYLQLSKKDPIIKLLYVTPEKVCASNRLI 779
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 780 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 830
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 831 LTATANPRVQKDILTQLKIVRPQVFSM-SFNRHNLKYYV 868
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 104/184 (56%), Gaps = 14/184 (7%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEV 565
P + G IIY +R+E ++A L G+ A AY+A L S V H +++ +V
Sbjct: 887 HHPYDSG--IIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQV 944
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMP 622
+ ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ CVL Y +++ +
Sbjct: 945 ICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCVLFYTYHDVTRLK 1004
Query: 623 TLLPSRRSEDQ-TKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL----- 674
L+ + +Q T++ + L Y N + CR L+ YFGE+ F+ C+
Sbjct: 1005 RLILMEKDGNQHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPNFCKKYSDVS 1064
Query: 675 CDVC 678
CD C
Sbjct: 1065 CDNC 1068
>gi|403216335|emb|CCK70832.1| hypothetical protein KNAG_0F01640 [Kazachstania naganishii CBS
8797]
Length = 1373
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 130/229 (56%), Gaps = 20/229 (8%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-TGKV 215
W ++++ L + F ++ Q+EA++A L D VL TG GKSLC+Q+PA++ +GK
Sbjct: 605 WSGELSNKLHEVFKLPGFRSNQEEAINATLEGKDVFVLMPTGGGKSLCYQLPAVVRSGKT 664
Query: 216 ---VVVISPLISLMHDQCSKLSKHGVTACFL---GSGQPDNKVEQKALRGMYSIIYVCPE 269
+VISPLISLM DQ L + AC G+ + + + G+ +IY+ PE
Sbjct: 665 RGTTIVISPLISLMQDQVEHLLARNIKACMFSSRGTAEERRQTFNLFIHGLLDLIYISPE 724
Query: 270 TVI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
+ + K +++L E +A IDE HCVS WGHDFRPDY+ L + + F
Sbjct: 725 MISASEQCKKAIRKLHEDGNLARVVIDEAHCVSNWGHDFRPDYKELKIFKREFP------ 778
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
DIP+MALTATA+ QVR DI+ +L + K F+ SF R NL + VK
Sbjct: 779 ---DIPMMALTATASEQVRMDIIHNLEL-KNPVFLKQSFNRTNLFYEVK 823
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 14/205 (6%)
Query: 488 RSFERTDLL--------NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539
+SF RT+L N E ++ + IIY ++ A L +K
Sbjct: 811 QSFNRTNLFYEVKKKSKNTIYEICDEIKRKFRNQTGIIYCHSKNSCEQTATQLQRNRIKC 870
Query: 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599
A Y+A L + ++ + ++++V+ AT+AFGMGIDK +VR + H+ P++LE YYQE
Sbjct: 871 AYYHAGLEPEERFKIQKSWQTDEIQVICATVAFGMGIDKPDVRFVYHFTIPRTLEGYYQE 930
Query: 600 AGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRM--LSDCFRYGMNTSCC 654
GRAGRDG + C Y ++ +M T++ + D+ + + L Y N + C
Sbjct: 931 TGRAGRDGKYSYCTTYFSFRDIRNMQTMIQKDENLDRENKEKHLAKLQQVLGYCDNMTDC 990
Query: 655 RAKILVEYFGEDFSHEKCQL-CDVC 678
R K+++ YF EDF C CD C
Sbjct: 991 RRKLVLSYFNEDFDAALCHKNCDNC 1015
>gi|374298589|ref|YP_005050228.1| ATP-dependent DNA helicase RecQ [Desulfovibrio africanus str.
Walvis Bay]
gi|332551525|gb|EGJ48569.1| ATP-dependent DNA helicase RecQ [Desulfovibrio africanus str.
Walvis Bay]
Length = 769
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 121/215 (56%), Gaps = 15/215 (6%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG++S + Q+E ++ D +VL TG GKSLC+QIPALL + VV+SPLI
Sbjct: 31 ILRTIFGYASFQGRQEEIITHVADGGDAVVLMPTGGGKSLCYQIPALLRPGLGVVVSPLI 90
Query: 224 SLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LM DQ L++ GV A L S V + L G ++YV PE +R R
Sbjct: 91 ALMQDQVGGLTQMGVAAACLNSALTPSAARSVIEDMLAGRLDLLYVAPERAVR--PDFLR 148
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L +ALFAIDE HCVS+WGHDFRP+YR L+VL F +P +ALTATA
Sbjct: 149 LLGQVELALFAIDEAHCVSQWGHDFRPEYRELAVLGRAFPG---------VPRIALTATA 199
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
R DIL L + G SF RPNLR+ VK
Sbjct: 200 DEPTRRDILAGLDL-HGAALYCASFDRPNLRYIVK 233
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 99/190 (52%), Gaps = 16/190 (8%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566
+ P E G I+Y +R++ A L G++A Y+A LP S+ R F + ++
Sbjct: 249 EHPGEAG--IVYCLSRRKVEETAARLAKEGLRALPYHAGLPSSERERNMDAFMREEGLIM 306
Query: 567 VATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLP 626
VAT+AFGMG+DK NVR + H P+SLEAY+QE GRAGRDG AD + L + +
Sbjct: 307 VATVAFGMGVDKPNVRFVAHLDPPRSLEAYHQETGRAGRDGLPADAWMVYGLQDIVAMRA 366
Query: 627 SRR--------SEDQTKQAYRMLS----DCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL 674
R S+D A++ L D T+ CR +L+ YF E+F C
Sbjct: 367 MLRGEEAQVSGSQDHDGLAHKRLEARKLDALLGYCETTACRRTVLLGYFDENF-QGPCNS 425
Query: 675 CDVCVDGPPE 684
CD C++ PPE
Sbjct: 426 CDCCLE-PPE 434
>gi|345315332|ref|XP_001515695.2| PREDICTED: Bloom syndrome protein [Ornithorhynchus anatinus]
Length = 865
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 130/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 78 IFHKKFGLHHFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACISPGVSIVISPLR 137
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 138 SLIVDQVQKLTSLDIPATYLTGDKTDSEAASIYLQLSKKDPIIKLLYVTPEKVCASNRLI 197
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R++VLR+ F + +P+MA
Sbjct: 198 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNVLRQKFPS---------VPVMA 248
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + K F + SF R NL++ V
Sbjct: 249 LTATANPRVQKDILTQLKILKPQVFSM-SFNRHNLKYDV 286
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 100/184 (54%), Gaps = 14/184 (7%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEV 565
P + G IIY +R+E ++A L G+ A AY+A L S V H +++ +V
Sbjct: 305 HHPYDSG--IIYCLSRRECDTMALTLRKDGLAALAYHAGLSDSARDEVQHKWINQDGCQV 362
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL- 624
+ ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + + L
Sbjct: 363 ICATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYSYHDVIRLK 422
Query: 625 ---LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQ-----L 674
L + T+Q + L Y N + CR L+ YFGE+ F+ C+
Sbjct: 423 RLILMEKDGNSHTRQTHFNNLYSMVHYCENIAECRRIQLLSYFGENGFNPNFCKEHLDVA 482
Query: 675 CDVC 678
CD C
Sbjct: 483 CDNC 486
>gi|219668952|ref|YP_002459387.1| ATP-dependent DNA helicase RecQ [Desulfitobacterium hafniense
DCB-2]
gi|219539212|gb|ACL20951.1| ATP-dependent DNA helicase RecQ [Desulfitobacterium hafniense
DCB-2]
Length = 728
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 126/215 (58%), Gaps = 16/215 (7%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
SLLK++FG+S + Q + + + L D + + TG+GKSL +QIPALL V +VISPL
Sbjct: 7 SLLKRYFGYSQFRKGQDKVIHSLLQSSDTVAIMPTGAGKSLSYQIPALLFDGVTLVISPL 66
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ---KALRGMYSIIYVCPETVIRL-IKPL 278
ISLM DQ L + GV A F+ S +V + KA +G Y ++Y+ PE RL +
Sbjct: 67 ISLMKDQVDSLHEAGVPATFINSSLSMQEVWERINKARQGRYKLLYIAPE---RLEAESF 123
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L ES I+ A+DE HCVS+WGHDFRP YR++ E SL + A TA
Sbjct: 124 LTLLESLTISFVAVDEAHCVSQWGHDFRPSYRKIGAFVE--------SLPHRPIIGAFTA 175
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFS 373
TAT +VREDI+ L + FV T F RPNL+FS
Sbjct: 176 TATQEVREDIVSLLKLESPQVFV-TGFDRPNLKFS 209
Score = 119 bits (297), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 94/184 (51%), Gaps = 17/184 (9%)
Query: 506 LQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEV 565
LQ E G IIY TRKE + YL G G+ Y+A + ++ F +K +
Sbjct: 225 LQHRSESG--IIYAATRKEVDQLQTYLKGKGLLVGKYHAGMSDLDRQKAQEAFLYDKTPL 282
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC---------VLYA 616
+VAT AFGMGIDK NVR +IHY P+++EAYYQEAGRAGRDG A+C VL
Sbjct: 283 MVATNAFGMGIDKSNVRFVIHYNMPKNMEAYYQEAGRAGRDGEPAECILLFAPQDVVLQR 342
Query: 617 NLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCD 676
L T P R+ + K L D Y C R +IL EYFGE +C C
Sbjct: 343 YLIDNNTFNPERKVNEHKK-----LQDMADYCHTARCLRKEIL-EYFGETEIPAECGNCG 396
Query: 677 VCVD 680
C D
Sbjct: 397 NCTD 400
>gi|170064539|ref|XP_001867566.1| ATP-dependent DNA helicase Q1 [Culex quinquefasciatus]
gi|167881896|gb|EDS45279.1| ATP-dependent DNA helicase Q1 [Culex quinquefasciatus]
Length = 701
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 132/230 (57%), Gaps = 19/230 (8%)
Query: 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTG 213
G W V +L + F + ++ Q A++ L+ HD ++LA TG GKSLCFQ+PAL+
Sbjct: 68 GHAWSGTVRQVLGEVFRMADFRSQQLPAINGILSKHDVILLAPTGGGKSLCFQLPALVAD 127
Query: 214 KVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVE--QKALRG----MYSIIYVC 267
+ VV+SPLISLM DQ L K GV A +L + + V K LR I+Y+
Sbjct: 128 GITVVVSPLISLMEDQVWALKKLGVKAEYLSANIDKDVVNNVNKLLRDGDTEQLKIVYIT 187
Query: 268 PETVI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324
PE + R + LQ+ ++ +A FAIDEVHC S+WGHD+RPDY+ L+VL++ +
Sbjct: 188 PERMAKSNRFMSALQKCYNAKKLAQFAIDEVHCCSQWGHDYRPDYKLLAVLKKMYP---- 243
Query: 325 KSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
D+P++ +TATAT +V D+ K L + + F F RPNL + V
Sbjct: 244 -----DVPILGVTATATAKVLNDVQKMLGLRECLIFN-APFNRPNLYYHV 287
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 97/170 (57%), Gaps = 16/170 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY T KET I+ L VK Y+A L Q R H + N+++ VVAT+AFGMG
Sbjct: 315 IIYTFTVKETEEISTQLLQRDVKVIPYHAYLDAKQRSRTHQRWMSNEVQAVVATVAFGMG 374
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSED 632
IDK +VR +IH+ +S+E +YQE+GRAGRDG ADC+L + +L + T+
Sbjct: 375 IDKADVRFVIHHTISKSMENFYQESGRAGRDGRRADCILLYRFMDLFRLSTM-------- 426
Query: 633 QTKQAYRMLSDCF---RYGMNTSCCRAKILVEYFGEDFSHEKC-QLCDVC 678
+ Q Y LS+ + +Y +N CR +++ +F E + C ++CD C
Sbjct: 427 -SFQEYEGLSNLYSMVKYCINGKDCRRRLISRHFAEVWDDTHCNRMCDRC 475
>gi|408675008|ref|YP_006874756.1| ATP-dependent DNA helicase RecQ [Emticicia oligotrophica DSM 17448]
gi|387856632|gb|AFK04729.1| ATP-dependent DNA helicase RecQ [Emticicia oligotrophica DSM 17448]
Length = 715
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 126/221 (57%), Gaps = 29/221 (13%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LKK+FG+ S + Q E + +A DC+VL TG GKS+CFQ+PA++ + +VISPLI
Sbjct: 6 VLKKYFGYDSFRPLQAEIIETIIAQKDCMVLMPTGGGKSICFQVPAMVMPGITLVISPLI 65
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETV-----IR 273
+LM DQ L +G+ A FL S + +EQ+ + G ++Y+ PE + +
Sbjct: 66 ALMQDQVQALKSNGIPAAFLNSTL--STIEQRTIEEDCKNGSLKLLYISPEKLFSNNYLG 123
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
IK L + AIDE HCVS WGHDFRP+Y +L L++ F ++P+
Sbjct: 124 FIKTL-------NVNQIAIDESHCVSTWGHDFRPEYIQLKALKDTFP---------NVPM 167
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+ALTATA R+DIL L + + F+ +SF RPNL V
Sbjct: 168 VALTATADRVTRKDILNQLGIPEALIFI-SSFDRPNLNLRV 207
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 15/177 (8%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK T +A+ L G++A Y+A L V + +++++V+VATIAFGMG
Sbjct: 230 IIYCLSRKNTEDVAEGLRKLGIRAMHYHAGLDAQTRAEVQDAYIKDEIQVIVATIAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--------LPS 627
IDK NVR +IHY P ++E++YQE GRAGRDG +D +L+ + + T LP
Sbjct: 290 IDKSNVRFVIHYSLPSNVESFYQEIGRAGRDGMKSDTLLFYSFGDIITRKEMIQKSELPD 349
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
E Q + RM + + CR ++L+ YF E+ ++ C CDVC PP+
Sbjct: 350 EMKEVQLAKLERM-----KQYAESEICRRRVLMSYFNEE-TNNDCGNCDVC-QNPPQ 399
>gi|238922686|ref|YP_002936199.1| hypothetical protein EUBREC_0261 [Eubacterium rectale ATCC 33656]
gi|238874358|gb|ACR74065.1| hypothetical protein EUBREC_0261 [Eubacterium rectale ATCC 33656]
Length = 659
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 131/228 (57%), Gaps = 16/228 (7%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
+ +N LK++FG+ SL+ Q+E ++ LA HD L + TG+GKSLC+Q+PAL+ + +V
Sbjct: 1 MNINQTLKQYFGYDSLRTGQEELINGILAGHDVLGIMPTGAGKSLCYQLPALMLKGITLV 60
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVIRLI 275
ISPLISLM DQ L++ GV A ++ S +N++ A +G Y IIYV PE RL
Sbjct: 61 ISPLISLMSDQVKALNQAGVHAAYINSSLTENQIRMALSYASQGRYKIIYVAPE---RLN 117
Query: 276 KP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
P A + I++ +DE HC+S+WG DFRP Y + A L L +
Sbjct: 118 TPRFLDFACNADISMLTVDEAHCISQWGQDFRPSYLEI--------AGFLTRLPRRPIVS 169
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
A TATAT +V+ DI+ SL ++ V T F RPNL F V K S+
Sbjct: 170 AFTATATERVKNDIVASLGLNNPVTMV-TGFDRPNLFFRVVTRKGGSQ 216
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 92/178 (51%), Gaps = 12/178 (6%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
ED IIY T+K + L G+ A Y+A L + ++ +F +++ V+VAT
Sbjct: 229 EDESGIIYCATKKNVDKLYTLLNEQGISAGRYHAGLSNDERKQNQEDFTYDRIRVMVATN 288
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPS 627
AFGMGIDK NVR ++HY PQSLE YYQEAGRAGRDG A+CVL+ + + LL +
Sbjct: 289 AFGMGIDKSNVRYVLHYNMPQSLEYYYQEAGRAGRDGEEAECVLFFSKQDIMINKFLLQN 348
Query: 628 RRSE-------DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVC 678
+ S +T R L Y C R IL YFG D + C C C
Sbjct: 349 KASAGDVASDMQKTANDRRKLQQMINYCETDKCLREFIL-SYFG-DTTPCICNKCSNC 404
>gi|426410842|ref|YP_007030941.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. UW4]
gi|426269059|gb|AFY21136.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. UW4]
Length = 708
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 127/219 (57%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIRRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + + I+LFAIDE HCVS+WGHDFRP+Y +L L E F D+P +A
Sbjct: 121 PRMLSFLQGLNISLFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I+ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVTRLHLQDAERF-LSSFDRPNIFYRI 209
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 108/204 (52%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +L G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLSERRSDA-GIVYCLSRKKVEEVAAFLSEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP + LR H + F + ++VAT+AFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NDLRAYHQKRFLNEEGLIMVATVAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GR GRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 317 GRGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED + C CD CVDG
Sbjct: 377 TLLAYFDEDMP-QPCGHCDNCVDG 399
>gi|345306474|ref|XP_001508312.2| PREDICTED: Werner syndrome ATP-dependent helicase-like
[Ornithorhynchus anatinus]
Length = 1751
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 122/214 (57%), Gaps = 14/214 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
S LK +FGHS K Q + + + L D LV+ ATG GKSLCFQ P + G + +VISP
Sbjct: 757 SCLKTYFGHSRFKPVQWKVIHSVLQERRDNLVVMATGYGKSLCFQFPPVYVGGLGIVISP 816
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ-KALRGMYSIIYVCPETVIRLIKPLQR 280
LISLM DQ +L + ACFLGS Q N +E KA G Y ++++ PE + LQ
Sbjct: 817 LISLMEDQVLQLEMSNIPACFLGSAQKKNDLEGIKA--GNYRVVFLTPEFCSMNLHLLQE 874
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
+ GI L A+DE HCVS+WGHDFR +R L L+ +P++ALTATA
Sbjct: 875 IDSIVGITLIAVDEAHCVSEWGHDFRNSFRTLGSLKTTLPL---------VPVIALTATA 925
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+ +R+DI+ L + K + T F RPNL V
Sbjct: 926 SSSIRDDIMHCLKL-KNPQVTCTGFDRPNLYLEV 958
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 104/179 (58%), Gaps = 15/179 (8%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T +A L + Y+A + + R H +F ++++ +VAT+A
Sbjct: 984 EGPTIIYCPSRKITEQVAVELKKLNIVCGTYHAGMGINLRRETHHKFMRDEIQCIVATVA 1043
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYA--NLSSMPTLLPSR 628
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C L+A ++S LL
Sbjct: 1044 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLPSSCHTLWAPGDMSLNRHLLNEI 1103
Query: 629 RSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGED---------FSHEKCQLCDVC 678
+++ +M++ +Y +++S CR KI++ +F + EKC CD C
Sbjct: 1104 KNDTFRLYKLKMMAKIEKY-LHSSMCRRKIILSHFEDKQLRKASSGIMGTEKC--CDNC 1159
>gi|333900176|ref|YP_004474049.1| ATP-dependent DNA helicase RecQ [Pseudomonas fulva 12-X]
gi|333115441|gb|AEF21955.1| ATP-dependent DNA helicase RecQ [Pseudomonas fulva 12-X]
Length = 707
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 130/220 (59%), Gaps = 19/220 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRILKDVFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRDGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAVALNSTLEAEQQRDIAARIRRGEIKMLYLAPE---RLVQ 120
Query: 277 P--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
P L L++ + IALFAIDE HCVS+WGHDFRP+Y +L L E F +P +
Sbjct: 121 PRMLDFLSQLQ-IALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFP---------QVPRI 170
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA ++ RE+I+ LH+ +F L+SF RPN+ + +
Sbjct: 171 ALTATADMRTREEIVNRLHLQNAERF-LSSFDRPNIFYRI 209
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 95/170 (55%), Gaps = 6/170 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
I+Y +RK+ +A +L G A Y+A LP ++LR + + F + ++VATIAFGM
Sbjct: 232 IVYCLSRKKVEEVASFLTEQGFPALPYHAGLP-AELRAFNQKRFLNEEGLIMVATIAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM---PTLLPSRRSE 631
GIDK NVR + H P+SLEAYYQE GRAGRDG AD + L M +L + +
Sbjct: 291 GIDKPNVRFVAHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDMIFLKQMLANSEGD 350
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
++ K+ + D + CR ++L+ YF E+ + C CD C DG
Sbjct: 351 ERHKRVEQHKLDAMLALCEETRCRRQVLLAYFDEELP-QPCGHCDNCTDG 399
>gi|422019090|ref|ZP_16365640.1| ATP-dependent DNA helicase RecQ [Providencia alcalifaciens Dmel2]
gi|414103632|gb|EKT65206.1| ATP-dependent DNA helicase RecQ [Providencia alcalifaciens Dmel2]
Length = 608
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 129/217 (59%), Gaps = 19/217 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++L FG+ S + Q + L DCLVL TG GKSLC+Q+PAL+ V +V+SPL
Sbjct: 15 NVLNSTFGYQSFRPGQDAVIGGILDGRDCLVLMPTGGGKSLCYQVPALVKQGVTLVVSPL 74
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKP-- 277
ISLM DQ +L HGV A L S Q ++ ++ +G ++YV PE RL+
Sbjct: 75 ISLMKDQVDQLKLHGVEAACLNSSQTSLEQRQIMEQCTQGKIKLLYVAPE---RLLTDYF 131
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
+Q+L ES IAL A+DE HC+S+WGHDFRP+YR L LR ++P+MALT
Sbjct: 132 IQQL-ESWDIALLAVDEAHCISQWGHDFRPEYRSLGQLRRALP---------NVPVMALT 181
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ATA R DI++ L ++ V +SF RPN+R+++
Sbjct: 182 ATADETTRADIVRLLELNDPLIHV-SSFDRPNIRYTL 217
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 107/192 (55%), Gaps = 13/192 (6%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP ++L + + I+Y +R + A+ L G+ AAY+A L +Q V
Sbjct: 222 KPLDQLWFFIKAQKGKSGIVYCNSRSKVEETAERLQKRGLSVAAYHAGLENAQREWVQDA 281
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F ++ L++VVAT+AFGMGI+K NVR + H+ P+++EAYYQE GRAGRDG A+ +L+ +
Sbjct: 282 FQKDNLQIVVATVAFGMGINKSNVRFVAHFDIPRNIEAYYQETGRAGRDGVEAEAILFYD 341
Query: 618 LSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMN-------TSCCRAKILVEYFGEDFSHE 670
+ M L RR ++ M D R+ +N CR +L+ YFGE+ +
Sbjct: 342 PADMAWL---RRCLEEKPAG--MQQDIERHKLNAIAAFAEAQTCRRLVLLNYFGEN-RQK 395
Query: 671 KCQLCDVCVDGP 682
C CD+C+D P
Sbjct: 396 PCGNCDICLDPP 407
>gi|399520767|ref|ZP_10761539.1| ATP-dependent DNA helicase RecQ [Pseudomonas pseudoalcaligenes CECT
5344]
gi|399111256|emb|CCH38098.1| ATP-dependent DNA helicase RecQ [Pseudomonas pseudoalcaligenes CECT
5344]
Length = 710
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 129/216 (59%), Gaps = 17/216 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK FG+ + + Q + D LVL TG GKSLCFQ+PAL+ + VV+SPLI
Sbjct: 8 ILKDVFGYDAFRGNQAAIIERVAGGGDALVLMPTGGGKSLCFQVPALMREGLAVVVSPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGSG-QPDNK--VEQKALRGMYSIIYVCPETVIRLIKP-LQ 279
+LM DQ + L + GV A L S PD + + + RG ++Y+ PE RL++P +
Sbjct: 68 ALMDDQVATLDELGVAAVALNSTLSPDEQREIADRIRRGQIKMLYLAPE---RLVQPRML 124
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ IALFAIDE HCVS+WGHDFRP+Y +L L E F ++P +ALTAT
Sbjct: 125 SFLQGLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFP---------NVPRIALTAT 175
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A + RE+I++ LH+ +F L+SF RPN+ + ++
Sbjct: 176 ADKRTREEIVQRLHLDNAERF-LSSFDRPNIFYRIQ 210
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 96/170 (56%), Gaps = 6/170 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
I+Y +RK+ +A +L G A Y+A LP ++LR H + F + ++VATIAFGM
Sbjct: 232 IVYCLSRKKVEEVADFLSSQGFPALPYHAGLP-NELRAYHQKRFLNEEGLIMVATIAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS---MPTLLPSRRSE 631
GIDK NVR + H P+SLEAYYQE GRAGRDG AD + L + +L + +
Sbjct: 291 GIDKPNVRFVCHMDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVIFLKQMLNNSEGD 350
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
++ K+ + D + CR + L+ YF E+ + + C CD C+DG
Sbjct: 351 ERHKRIEQHKLDAMLALCEETRCRRQALLGYFDEELA-QPCGHCDNCIDG 399
>gi|332982568|ref|YP_004464009.1| RecQ family ATP-dependent DNA helicase [Mahella australiensis 50-1
BON]
gi|332700246|gb|AEE97187.1| ATP-dependent DNA helicase, RecQ family [Mahella australiensis 50-1
BON]
Length = 491
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 142/249 (57%), Gaps = 22/249 (8%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK++FG+ + Q+ + + L+ +D L + TGSGKSLC+Q+PAL+ +V+SPLI+
Sbjct: 12 LKRYFGYDAFIGQQEAVIRSVLSGNDTLAVMPTGSGKSLCYQLPALILPGTAIVVSPLIA 71
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR----GMYSIIYVCPETVIRLIKPLQR 280
LM DQ L +G+ A F+ S + +Q+ +R G Y +IYV PE R L
Sbjct: 72 LMKDQVDFLRHNGIPAAFINSTLTIAQ-QQECMRRLQKGRYKLIYVAPER-FRSQSFLDG 129
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L E I+LFA+DE HC+S+WGHDFRPDY RL+ E G P++A TATA
Sbjct: 130 LKEVH-ISLFAVDEAHCISQWGHDFRPDYLRLAQAIEYTGRP---------PVIATTATA 179
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH-SKTSSRASYKKDFCQLID----I 395
T VR+DI++ L + + FV T F RPNLRF VK S S R ++ D + I
Sbjct: 180 TSYVRDDIIQQLKLVRPRCFV-TGFERPNLRFIVKAVSSESQREAFILDTIGQLRFPGII 238
Query: 396 YTKKKKTGE 404
YT +K E
Sbjct: 239 YTATRKATE 247
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 66/99 (66%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY TRK T +A L G+ AA Y+A L Q RV +F + +L V++AT AFGMG
Sbjct: 237 IIYTATRKATEMLATRLNRAGIIAAPYHAGLSDQQRIRVQDDFMQGRLPVILATNAFGMG 296
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL 614
+DK +V ++HY P SLEAYYQEAGRAGRDG A C+L
Sbjct: 297 VDKPDVGFVLHYNMPASLEAYYQEAGRAGRDGQPACCIL 335
>gi|114564972|ref|YP_752486.1| ATP-dependent DNA helicase RecQ [Shewanella frigidimarina NCIMB
400]
gi|114336265|gb|ABI73647.1| ATP-dependent DNA helicase RecQ [Shewanella frigidimarina NCIMB
400]
Length = 615
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 133/215 (61%), Gaps = 20/215 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L++ FG+ + + Q+E + L D LV+ TG GKS+C+Q+PA++ V VV+SPLIS
Sbjct: 26 LQQVFGYRAFREGQREVIEQSLQGQDTLVIMPTGGGKSMCYQLPAIVLPGVTVVVSPLIS 85
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKP--LQ 279
LM DQ L + GV+A +L S P + V +K G ++YV PE RL++P ++
Sbjct: 86 LMKDQVDSLLQSGVSAAYLNSSLPREQSAEVLRKLHSGEIKLLYVSPE---RLLRPDFIE 142
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
RL +S +++FA+DE HC+S+WGHDFRP+Y L L+E F +PLMALTAT
Sbjct: 143 RL-QSVDVSMFAVDEAHCISQWGHDFRPEYAALGQLKEYFPY---------LPLMALTAT 192
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
A R I + L ++ T +L+SF RPN+R++V
Sbjct: 193 ADHATRLSICERLGVTPYT--LLSSFDRPNIRYTV 225
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 123/220 (55%), Gaps = 12/220 (5%)
Query: 489 SFERTDLLNKPAERLSMLQE-----PLEDGLT-IIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ AE+L+ + +++G + I+Y +R+ +A+ L G A AY
Sbjct: 215 SFDRPNIRYTVAEKLNAANQLRQFLTIQNGTSGIVYCSSRRRVDEVAERLRLQGFNAQAY 274
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L + V +F ++++++VVAT+AFGMGI+K NVR ++HY P+S+EAYYQE GR
Sbjct: 275 HAGLSQEDRGNVQDKFLKDQVDIVVATVAFGMGINKSNVRFVVHYDIPKSIEAYYQETGR 334
Query: 603 AGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A+ + A++ + L+ Q + + L + CR ++L
Sbjct: 335 AGRDGLDAEAYMLFDPADIGRVRHLIEQSEPGPQQQVEFHKLHTMAAFA-EAQTCRRQVL 393
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
+ YF E + + C CD+C+D PP+ + E+A ++ I
Sbjct: 394 LNYFDE-VASKPCGNCDICLD-PPKRYDGTEDAQKVLSCI 431
>gi|310796170|gb|EFQ31631.1| RecQ family ATP-dependent DNA helicase [Glomerella graminicola
M1.001]
Length = 477
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/320 (33%), Positives = 165/320 (51%), Gaps = 35/320 (10%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
V ++ L++ F S+ + Q+E ++ L HD V AAT GKSLCFQ+PA + + +V
Sbjct: 11 VDIDYTLRRQFNKSTFRPHQREIIATALDGHDVFVQAATSFGKSLCFQLPACIDHGITIV 70
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSI--IYVCPE---- 269
+SPL+SLM +Q L G+ A L S P +++ Q G I +YV PE
Sbjct: 71 VSPLLSLMMNQVEALRSAGIYASSLNSNTPIAERDRINQDLASGHPRIRLLYVTPELCSS 130
Query: 270 -TVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
+ R IK + E +A A+DE HC+S+WGHDFR D++RLS RE F +
Sbjct: 131 DSFRRRIKLVHEQCE---LARIAVDEAHCISEWGHDFRKDFKRLSWFRETFPS------- 180
Query: 329 FDIPLMALTATATIQVREDILKSLHM----SKGTKFVLTSFFRPNLRFSVKHSKTSSRAS 384
+P+M LTATA VR+D+LK+L + + FV+T+ +RPNL ++++K
Sbjct: 181 --VPIMCLTATANPTVRQDLLKTLGLLEQPDRLKSFVMTA-YRPNLHIEIRYTKDQDDDR 237
Query: 385 YKKDFCQLIDIYTKKKKTGEK--EKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYD 442
DF I +++K G + E A+ + LD+ S + S E ++ +
Sbjct: 238 L-ADFLAWIRSVYERRKAGPRKAELEAVGERLDNVSGIIYTISRDECESLAAAL-----R 291
Query: 443 DEDVGNSPMGKEMSVEFLEN 462
DE VG P +++ E E
Sbjct: 292 DEGVGARPFHAKLTKEVKEQ 311
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 115/225 (51%), Gaps = 23/225 (10%)
Query: 482 RDRDTDR----------SFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKY 531
+D+D DR +ER + AE L + E L++ IIY +R E S+A
Sbjct: 231 KDQDDDRLADFLAWIRSVYERRKAGPRKAE-LEAVGERLDNVSGIIYTISRDECESLAAA 289
Query: 532 LCGFGVKAAAYNASLPKSQLRRVHTEFHENK--LEVVVATIAFGMGIDKLNVRRIIHYGW 589
L GV A ++A L K + T + N+ +V+VAT AFGMGIDK NVR ++H+
Sbjct: 290 LRDEGVGARPFHAKLTKEVKEQTLTRWVNNEPGYDVIVATTAFGMGIDKNNVRFVVHWRL 349
Query: 590 PQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLP--SRRSEDQTKQAYRMLSDC 644
P+S E YYQEAGRAGRDG+ + C LY +L + +++ +R + QA + L
Sbjct: 350 PKSFEGYYQEAGRAGRDGNASFCFLYYSREDLQRVQSMIRKGNRDGSNWEAQA-KSLQQL 408
Query: 645 FRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLK 689
Y NT+ CR + YFGE + CD D + + L+
Sbjct: 409 ALYCENTTACRHAQICRYFGE----SEVPQCDFACDWHKDAQGLQ 449
>gi|427427005|ref|ZP_18917050.1| ATP-dependent DNA helicase RecQ [Caenispirillum salinarum AK4]
gi|425883706|gb|EKV32381.1| ATP-dependent DNA helicase RecQ [Caenispirillum salinarum AK4]
Length = 600
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 142/248 (57%), Gaps = 28/248 (11%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
++L+ FG+ S + Q E + + D LV+ TG GKSLC+QIP L+ V +V+SP
Sbjct: 6 QTVLRSVFGYDSFRGMQGEVIEHVVDGGDALVIMPTGGGKSLCYQIPGLVRPGVAIVVSP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKP- 277
LI+LM DQ L + GV A L S P +VE++ G ++YV PE RL+
Sbjct: 66 LIALMQDQVEALRQLGVKAAALNSTLPWPEQQEVERQMRAGELDLVYVAPE---RLMGEG 122
Query: 278 -LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L LA + +ALFAIDE HCVS+WGHDFRP+Y +L L E F +P +AL
Sbjct: 123 CLNNLAHT-DLALFAIDEAHCVSQWGHDFRPEYLQLRTLHERFP---------HVPRVAL 172
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIY 396
TATA R +I++ L + G +FV F RPN+R+ V+ +KT+++ QL+ +
Sbjct: 173 TATADGPTRREIVERLALENGREFV-AGFDRPNIRYHVR-AKTNAK-------TQLLS-F 222
Query: 397 TKKKKTGE 404
K++ +GE
Sbjct: 223 IKREHSGE 230
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 94/172 (54%), Gaps = 6/172 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R + IA +L GV A Y+A LPK F + + VVATIAFGMG
Sbjct: 233 IVYCMSRAKVDDIAAWLNDEGVPALPYHAGLPKEVRFANQDRFLKEEGLTVVATIAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL---SSMPTLLPSRRSED 632
IDK +VR + H P+SLEAYYQE GRAGRDG ++ + + + + ++ + D
Sbjct: 293 IDKPDVRFVAHLDLPKSLEAYYQETGRAGRDGLPSNAWMVFGMQDAARLFQMIDQSDAAD 352
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
K R + T+ CR ++L+EYFG+ + E C CD C+D PPE
Sbjct: 353 AQKMIERRKVESLLGFAETARCRRQVLLEYFGD--TCEPCGNCDTCLD-PPE 401
>gi|158320015|ref|YP_001512522.1| ATP-dependent DNA helicase RecQ [Alkaliphilus oremlandii OhILAs]
gi|158140214|gb|ABW18526.1| ATP-dependent DNA helicase RecQ [Alkaliphilus oremlandii OhILAs]
Length = 745
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 130/223 (58%), Gaps = 16/223 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K +LKK++G+ + ++ Q E + L+ D L + TG GKSLC+QIPA++ +V+
Sbjct: 3 KAIEVLKKYYGYDNFRDGQDEIIDHILSGRDVLTIMPTGGGKSLCYQIPAMIMDGTAIVV 62
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ L + G+ A F+ S ++ ++A RG Y ++YV PE + +
Sbjct: 63 SPLISLMKDQVDTLQQMGIPAAFINSSLAFSESQRIFEEAKRGEYKLLYVAPERLES--E 120
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM-A 335
L S I++ A+DE HCVS+WGHDFRP Y R+ NL+SL D P++ A
Sbjct: 121 GFTELIRSIKISMVAVDEAHCVSRWGHDFRPSYLRIK---------NLRSLSEDHPVLAA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
TATAT +V+EDI+ + + +G + T F R NL+F V K
Sbjct: 172 FTATATSEVKEDIIDLIGL-EGPYEITTGFDRENLKFEVVRVK 213
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 104/189 (55%), Gaps = 8/189 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY TRK T + L G A Y+A L Q + +F + E++VAT AFGMG
Sbjct: 232 IIYCLTRKLTEQVCSELVRAGFNAIQYHAGLGDVQRSKNQDDFLFDNAEIMVATNAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS--MPTLLPSRRSED- 632
IDKL++R +IHY PQ++EAYYQEAGRAGRDG ++C+L + M L + D
Sbjct: 292 IDKLDIRYVIHYNMPQNIEAYYQEAGRAGRDGEPSECILLFSPQDIVMNNFLIDNGTTDG 351
Query: 633 --QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKE 690
+TK+ Y L D Y NT C K L+ YF D+ E+C C C++ E +++
Sbjct: 352 IGRTKE-YDKLQDMISY-CNTDKCLRKYLINYFDSDYDREECNNCGNCLN-EIESRDITI 408
Query: 691 EANILMQVI 699
EA ++ I
Sbjct: 409 EAQKILSCI 417
>gi|444376043|ref|ZP_21175292.1| ATP-dependent DNA helicase RecQ [Enterovibrio sp. AK16]
gi|443679814|gb|ELT86465.1| ATP-dependent DNA helicase RecQ [Enterovibrio sp. AK16]
Length = 616
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 132/215 (61%), Gaps = 15/215 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++L++ FG+ S ++ QKE + + + D LV+ TG GKSLC+QIPAL+ + +VISPL
Sbjct: 18 TVLQEVFGYHSYRDGQKEIIDSAVGGRDSLVIMPTGGGKSLCYQIPALVRDGLTIVISPL 77
Query: 223 ISLMHDQCSKLSKHGV-TACFLGSGQPDNK-VEQKALR-GMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +GV AC S PD + ++LR G ++YV PE + L++
Sbjct: 78 ISLMKDQVDQLLANGVQAACLNSSMNPDEQSATWQSLRNGSLKLLYVSPERI--LMRDFI 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+S + L A+DE HC+S+WGHDFRP+Y +L L+++F D+P+MALTAT
Sbjct: 136 ERLQSVNLGLIAVDEAHCISQWGHDFRPEYAQLGSLKQHF---------LDVPVMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
A R+DI + L + L SF RPN+R+++
Sbjct: 187 ADDTTRQDICQRLALDD-PHIYLGSFDRPNIRYTL 220
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 151/320 (47%), Gaps = 52/320 (16%)
Query: 464 SVDDWDVACGEFYGHSPHRDRDTDRSFERTDLL--NKPAERLSMLQEPLEDGLTIIYVPT 521
++DD + G F DR R L+ +KP +L+ I+Y +
Sbjct: 200 ALDDPHIYLGSF-----------DRPNIRYTLVEKHKPLAQLTQFLATQSGQSGIVYCNS 248
Query: 522 RKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNV 581
RK +A+ L G ++AAAY+A + Q V F + +++VVAT+AFGMGI+K NV
Sbjct: 249 RKRVEQVAEKLIGSNIRAAAYHAGMTNEQRAWVQEAFQRDDVQIVVATVAFGMGINKPNV 308
Query: 582 RRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL---------PSRRSED 632
R ++HY P+++E+YYQE GRAGRDG A+ V+ + S + L P + E
Sbjct: 309 RFVVHYDIPRNIESYYQETGRAGRDGLPAEAVMLYDPSDIGWLHRCLKEKPDGPQKLVES 368
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
A ++ CR +L+ YFGE + + C CD+C+D PP + + E+A
Sbjct: 369 HKLNAMGAFAEAL-------TCRRLVLLNYFGE-YREKPCGNCDICLD-PPTLFDGTEQA 419
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLL-- 750
+ + N Q+ + + G++ Q +I+E + L+T L
Sbjct: 420 QKALSCVYRVN-QNFGVGYTVEVLRGMQNQ-------------RIKEHGHEKLSTYGLGK 465
Query: 751 -----WWRGLARIMENKGYI 765
+W + R + ++GY+
Sbjct: 466 AFSHEYWVSIFRQLIHRGYL 485
>gi|195329754|ref|XP_002031575.1| GM26077 [Drosophila sechellia]
gi|194120518|gb|EDW42561.1| GM26077 [Drosophila sechellia]
Length = 1268
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 127/214 (59%), Gaps = 18/214 (8%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG S + Q + ++A L +DC VL TG GKSLC+Q+PA+LT V +VISPL SL+ D
Sbjct: 514 FGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFD 573
Query: 229 QCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETV---IRLIKPLQR 280
Q +KL+ + A L Q V + ++ M ++YV PE + R L
Sbjct: 574 QINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQDTLDT 633
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L + I+ F IDE HCVS+WGHDFRPDY++L VL++ F ++P +ALTATA
Sbjct: 634 LNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFP---------NVPTIALTATA 684
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
T +VR DIL L++ K K+ L+SF R NLR+ V
Sbjct: 685 TPRVRLDILAQLNL-KNCKWFLSSFNRSNLRYRV 717
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 104/179 (58%), Gaps = 18/179 (10%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RKE +K +C G++A +Y+A L ++ ++ K+ V+ AT+AFGMG
Sbjct: 743 IIYCLSRKECDETSKKMCKDGIRAVSYHAGLTDTERESRQKDWLTGKIRVICATVAFGMG 802
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM---PTLLPSRRS-- 630
IDK +VR ++HY P+S+E YYQEAGRAGRDG +ADC+LY N S M +L S ++
Sbjct: 803 IDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDMADCILYYNYSDMLRIKKMLDSDKALQ 862
Query: 631 ----EDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-----QLCDVCVD 680
+ YR++ C N + CR ++YFGE F+ E+C CD C++
Sbjct: 863 YNVKKIHVDNLYRIVGYC----ENLTDCRRAQQLDYFGEHFTSEQCLENRETACDNCIN 917
>gi|70728971|ref|YP_258705.1| ATP-dependent DNA helicase RecQ [Pseudomonas protegens Pf-5]
gi|68343270|gb|AAY90876.1| ATP-dependent DNA helicase RecQ [Pseudomonas protegens Pf-5]
Length = 708
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIRRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + +S IALFAIDE HCVS+WGHDFRP+Y +L L E F +P +A
Sbjct: 121 PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFP---------QVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I+ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVNRLHLQDAERF-LSSFDRPNIFYRI 209
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 107/203 (52%), Gaps = 12/203 (5%)
Query: 489 SFERTDLL------NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ +P ++L I+Y +RK+ +A +LC G A Y
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLQAFLNERRSDAGIVYCLSRKKVDEVAAFLCEQGFTALPY 258
Query: 543 NASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
+A LP ++LR H + F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE G
Sbjct: 259 HAGLP-NELRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFVAHMDLPKSLEAYYQETG 317
Query: 602 RAGRDGHLADCVLYANLSS---MPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG AD + L + +L + +++ K+ + D + CR +
Sbjct: 318 RAGRDGLPADAWMAYGLQDVLMLKQMLQNSEGDERHKRLEQHKLDAMLALCEETRCRRQT 377
Query: 659 LVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED + C CD CVDG
Sbjct: 378 LLAYFDEDMP-QPCGHCDNCVDG 399
>gi|148258132|ref|YP_001242717.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. BTAi1]
gi|146410305|gb|ABQ38811.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. BTAi1]
Length = 625
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 133/224 (59%), Gaps = 17/224 (7%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
+D + ++L FG + Q++ + A +CLVL TG GKSLC+Q+PALL
Sbjct: 9 TDTADRALAVLHSVFGLPGFRGAQEKVVRHVTAGGNCLVLMPTGGGKSLCYQLPALLRKG 68
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETV 271
+V+SPLI+LM DQ + L++ GV A L S + ++VE++ + G ++YV PE
Sbjct: 69 CGIVVSPLIALMRDQVAGLTEAGVNAAVLNSTLSREEADEVERRLIAGDLDLLYVAPE-- 126
Query: 272 IRLIKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
RL+ P L E IALFAIDE HCVS+WGHDFRP+Y LS++ E F +
Sbjct: 127 -RLVTPRCLALLERADIALFAIDEAHCVSQWGHDFRPEYIGLSIIAERFP---------E 176
Query: 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P +ALTATA R++I + L ++ +FV SF RPN+R+ +
Sbjct: 177 VPRIALTATADELTRKEIAERLGLTDAPQFV-ASFDRPNIRYEI 219
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 116/220 (52%), Gaps = 11/220 (5%)
Query: 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
DR R +E D N PA+ + ++E ++Y +R + A L G+ A Y
Sbjct: 211 DRPNIR-YEIVDKNNGPAQLKAFIKERHPGDAGVVYCLSRAKVEDTAAALTEAGITAIPY 269
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L S R F VVVAT+AFGMGIDK +VR + H P+S+EAYYQE GR
Sbjct: 270 HAGLEASVRSRNQDRFINEDGIVVVATVAFGMGIDKPDVRFVAHLDLPKSIEAYYQETGR 329
Query: 603 AGRDGHLADCVLYANLSSMPTLLPSRRSEDQT--KQAYRMLS----DCFRYGMNTSCCRA 656
AGRDG + + LS ++ RR D++ +A++ +S D T+ CR
Sbjct: 330 AGRDGKPSTAWMAYGLSD---IVQQRRMIDESTGAEAFKRVSIRKLDALVALAETAGCRR 386
Query: 657 KILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILM 696
++L+ YFGE + EKC CD C+ PP++++ K A L+
Sbjct: 387 RLLLSYFGETPADEKCGNCDNCLS-PPQVRDGKVIAQKLL 425
>gi|402875293|ref|XP_003901445.1| PREDICTED: Bloom syndrome protein-like [Papio anubis]
Length = 1042
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 283 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 342
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE + RLI
Sbjct: 343 SLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLI 402
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 403 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 453
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 454 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 491
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 101/182 (55%), Gaps = 14/182 (7%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVV 567
P + G IIY +R+E ++A L G+ A AY+A L S V ++ +++ +V+
Sbjct: 512 PYDSG--IIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVIC 569
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--- 624
ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L
Sbjct: 570 ATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRL 629
Query: 625 -LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL-----CD 676
+ + T++ + L Y N + CR L+ YFGE+ F+ + C+ CD
Sbjct: 630 IIMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCD 689
Query: 677 VC 678
C
Sbjct: 690 NC 691
>gi|398953727|ref|ZP_10675518.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM33]
gi|398153426|gb|EJM41926.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM33]
Length = 708
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 127/219 (57%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIRRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + + I+LFAIDE HCVS+WGHDFRP+Y +L L E F D+P +A
Sbjct: 121 PRMLSFLQGLNISLFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I+ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVTRLHLQDAERF-LSSFDRPNIFYRI 209
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 108/204 (52%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +L G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLAERRSDA-GIVYCLSRKKVEEVAAFLSEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP + LR H + F + ++VAT+AFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NDLRAYHQKRFLNEEGLIMVATVAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GR GRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 317 GRGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED + C CD CVDG
Sbjct: 377 TLLAYFDEDMP-QPCGHCDNCVDG 399
>gi|374290851|ref|YP_005037886.1| ATP-dependent DNA helicase [Azospirillum lipoferum 4B]
gi|357422790|emb|CBS85631.1| ATP-dependent DNA helicase [Azospirillum lipoferum 4B]
Length = 642
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 132/220 (60%), Gaps = 19/220 (8%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+ FG+ S + Q + + + D LVL TG GKSLC+QIPAL+ V VV+SPLI+
Sbjct: 28 LRTVFGYDSFRGQQADIIDHVVRGGDALVLMPTGGGKSLCYQIPALVRDGVTVVVSPLIA 87
Query: 225 LMHDQCSKLSKHGVTACFLGS--GQPDNK-VEQKALRGMYSIIYVCPETVIRLIKP--LQ 279
LM DQ + L + GV A FL S G + + VE+ ++G ++YV PE RL+ P L
Sbjct: 88 LMRDQVTALRELGVRAAFLNSSLGPAEAREVERAMVQGEIDLVYVAPE---RLVTPRFLD 144
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L +R +ALFA+DE HCVS+WGHDFRP+Y +LS+L E +P +ALTAT
Sbjct: 145 LLDRTR-LALFALDEAHCVSQWGHDFRPEYLQLSILHERHPM---------VPRIALTAT 194
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT 379
A +Q R +I L ++ F L+SF RPN+ + V K+
Sbjct: 195 ADVQTRAEIKDKLGLTDARVF-LSSFDRPNITYRVVPKKS 233
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 107/202 (52%), Gaps = 11/202 (5%)
Query: 489 SFERTDL----LNKPAER---LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + K +ER L+ L+E + I+Y +R + +A +L G +A
Sbjct: 218 SFDRPNITYRVVPKKSERQQMLAFLRENHPEDAGIVYCMSRNKVEDVAAWLNQQGREALP 277
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A LP F +++ V+VAT+AFGMGIDK NVR + H P+SLEAYYQE G
Sbjct: 278 YHAGLPADVREANQDRFIKSEGLVMVATVAFGMGIDKPNVRFVCHLDPPKSLEAYYQETG 337
Query: 602 RAGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG A+ + A++ + +L + D ++ R + T CR ++
Sbjct: 338 RAGRDGLPANAWMAYGMADVVMLRQMLEQSEAGDSHRRVERGKLEALLGFCETPDCRRQV 397
Query: 659 LVEYFGEDFSHEKCQLCDVCVD 680
L+ YF E E C CD C+D
Sbjct: 398 LLNYFNETLP-EPCGNCDTCLD 418
>gi|291526484|emb|CBK92071.1| ATP-dependent DNA helicase, RecQ family [Eubacterium rectale DSM
17629]
Length = 659
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 131/228 (57%), Gaps = 16/228 (7%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
+ +N LK++FG+ SL+ Q+E ++ LA HD L + TG+GKSLC+Q+PAL+ + +V
Sbjct: 1 MNINQTLKQYFGYDSLRTGQEELINGILAGHDVLGIMPTGAGKSLCYQLPALMLKGITLV 60
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVIRLI 275
ISPLISLM DQ L++ GV A ++ S +N++ A +G Y IIYV PE RL
Sbjct: 61 ISPLISLMSDQVKALNQAGVHAAYINSSLTENQIRMALSYASQGRYKIIYVAPE---RLN 117
Query: 276 KP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
P A + I++ +DE HC+S+WG DFRP Y + A L L +
Sbjct: 118 TPRFLDFACNADISMLTVDEAHCISQWGQDFRPSYLEI--------AGFLTRLPRRPIVS 169
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
A TATAT +V+ DI+ SL ++ V T F RPNL F V K S+
Sbjct: 170 AFTATATERVKNDIVASLGLNNPVTMV-TGFDRPNLFFRVVTRKGGSQ 216
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 92/178 (51%), Gaps = 12/178 (6%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
ED IIY T+K + L G+ A Y+A L + ++ +F +++ V+VAT
Sbjct: 229 EDESGIIYCATKKNVDKLYTLLNEQGISAGRYHAGLSNDERKQNQEDFTYDRIRVMVATN 288
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPS 627
AFGMGIDK NVR ++HY PQSLE YYQEAGRAGRDG A+CVL+ + + LL +
Sbjct: 289 AFGMGIDKSNVRYVLHYNMPQSLEYYYQEAGRAGRDGEEAECVLFFSKQDIMINKFLLQN 348
Query: 628 RRSE-------DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVC 678
+ S +T R L Y C R IL YFG D + C C C
Sbjct: 349 KASAGDVASDMQKTANDQRKLQQMINYCETDKCLREFIL-SYFG-DTTPCICNKCSNC 404
>gi|167535712|ref|XP_001749529.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771921|gb|EDQ85580.1| predicted protein [Monosiga brevicollis MX1]
Length = 2199
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 129/228 (56%), Gaps = 27/228 (11%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
K+ FG + Q EA++A L DC VL TG GKSLC+Q+PA+ + V VVISPLIS
Sbjct: 601 FKQRFGLHRFRPHQLEAVNAALLGQDCFVLMPTGGGKSLCYQLPAVTSRGVTVVISPLIS 660
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMY-------SIIYVCPETVIRLIKP 277
L+ DQ + L G+ FL S Q ++ EQ + ++Y+ PE RL
Sbjct: 661 LIQDQVAGLQALGIRVLFLSSTQ--SRAEQNEVHRQLCADAVQDDLLYITPE---RLKSS 715
Query: 278 LQRLA----ESRG-IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
+ R +RG +A F IDE HCVS+WGHDFRPDY+ L ++R+ F +P
Sbjct: 716 MMRQTFESLHARGLLARFVIDEAHCVSQWGHDFRPDYKELQIVRQWFP---------RVP 766
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380
LMALTATAT +V+ED+L L M + F +SF R NL + V+ K S
Sbjct: 767 LMALTATATPRVKEDVLNILGMQRAVTFQ-SSFNRTNLFYEVRPKKKS 813
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 96/200 (48%), Gaps = 35/200 (17%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R++ + A L G+KA AY+A L V + ++ +++ ATIAFGMG
Sbjct: 831 IVYCMSRRDAETTALDLQRRGIKALAYHAGLDPGLRSEVQDVWARSRADIICATIAFGMG 890
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSED 632
IDK +VR +IH P+S+E YYQEAGRAGRDG A C+L +A+ + ++ +
Sbjct: 891 IDKPDVRYVIHATLPKSMEGYYQEAGRAGRDGQPAQCILFYTFADKARHEFMINKSDGDW 950
Query: 633 QTKQAYRM------------------------------LSDCFRYGMNTSCCRAKILVEY 662
+ ++ +R L+ F G+ S CR K + Y
Sbjct: 951 RQREQHRFFLSLSLSLSLSLLLFFFLSCFVVEVQIEVALTLHFALGI-ISNCRRKQQLAY 1009
Query: 663 FGEDFSHEKCQ-LCDVCVDG 681
F E F C CDVC G
Sbjct: 1010 FDEQFDARDCNDNCDVCKKG 1029
>gi|427704185|ref|YP_007047407.1| RecQ familyATP-dependent DNA helicase [Cyanobium gracile PCC 6307]
gi|427347353|gb|AFY30066.1| ATP-dependent DNA helicase, RecQ family [Cyanobium gracile PCC
6307]
Length = 498
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 140/251 (55%), Gaps = 22/251 (8%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L++HFG S + Q+ + A LA DCL + TG+GKSLCFQ+PAL+ +VVVISPL++
Sbjct: 10 LRRHFGWESFRPGQRPVVEALLAGRDCLAVLPTGAGKSLCFQLPALVRDGLVVVISPLVA 69
Query: 225 LMHDQCSKLSKHGVTACFLGSG-QPDNK--VEQKALRGMYSIIYVCPET----VIRLIKP 277
LM DQ S+L HG+ A L G P + ++Q+ + ++Y+ PE R +
Sbjct: 70 LMQDQVSQLQAHGIPAACLHRGLDPGQRRQLQQRLVANRLRLLYLAPERAQAEATRQL-- 127
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L E+ + A+DE HC+S WGHDFRPDYRRL L++L +PL+AL+
Sbjct: 128 LDEALETGRLVALAVDEAHCISAWGHDFRPDYRRL---------GQLRALCPGVPLVALS 178
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQ---LID 394
ATA QVR DI++ L + + V S R NL ++++ + A + +
Sbjct: 179 ATAAPQVRADIIRLLQLRRPLVQV-RSARRGNLAYTMRRRPSDPLAEVVAAIGEARGAVL 237
Query: 395 IYTKKKKTGEK 405
IY + +++ E+
Sbjct: 238 IYARTRRSVEQ 248
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 15/199 (7%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G +IY TR+ A L GV+A AY+A + + F E+ V+VAT+AF
Sbjct: 234 GAVLIYARTRRSVEQWAARLTAAGVEAIAYHAGMDPESRQLALRHFQEHPAPVLVATVAF 293
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSED 632
GMG+D+ +V ++H P S E Y QE+GRAGRDG A C++ + + +L + RS
Sbjct: 294 GMGVDRPDVGLVLHLDLPASAEGYLQESGRAGRDGLPARCLVLFDPADRTSLGWAMRSAG 353
Query: 633 QTKQAYRMLSDCFRYGM------------NTSCCRAKILVEYFGEDFSHEKCQLCDVCVD 680
Q + L + R + CR + L+ GE S C CD C+
Sbjct: 354 QQLPPDQRLLERHRLELAQQQLRRIEAVAEGEGCREQALLLAVGEISS--PCGRCDNCLS 411
Query: 681 GPPEMKNLKEEANILMQVI 699
P + +A +L+ +
Sbjct: 412 A-PSRSDWAPQAAVLLSAL 429
>gi|166240117|ref|XP_001732947.1| ATP-dependent DNA helicase RecQ family protein [Dictyostelium
discoideum AX4]
gi|165988751|gb|EDR41122.1| ATP-dependent DNA helicase RecQ family protein [Dictyostelium
discoideum AX4]
Length = 1136
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 133/245 (54%), Gaps = 15/245 (6%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K+ +LKK+FG S + Q E + ++ D + ATG+GKSLCFQIP L K +V+
Sbjct: 288 KIIEILKKYFGLHSFRPNQLEVIKHTISGGDSFLSMATGTGKSLCFQIPPLYLNKTAIVV 347
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG-QPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
SPL+SL+ DQ KL G+ L S + +K + +G Y+++Y+ PE +I + +
Sbjct: 348 SPLVSLITDQTLKLKSLGIKVTKLSSDIKSSSKEYELIFKGYYNLVYITPERIINEYQSI 407
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
L + I LFAIDE HC+S+WGH FR YR+L LR F +P+MA+TA
Sbjct: 408 GELVRNEKICLFAIDEAHCISQWGHSFRESYRKLQELRNQFPT---------VPIMAVTA 458
Query: 339 TATIQVREDILKSLHMSKGT-KFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYT 397
TAT + DI+ +L + G K +S RPN+ + V DF ++DI
Sbjct: 459 TATKSIESDIINNLGIGNGNCKMFKSSKNRPNIYYKV----IIKDKLVSNDFKMILDILL 514
Query: 398 KKKKT 402
+ +KT
Sbjct: 515 ETRKT 519
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 101/209 (48%), Gaps = 50/209 (23%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
TIIY T + + ++LC +++ Y++ L Q F NK EV+VATIAFGM
Sbjct: 527 TIIYCTTIQIANELNRFLCDNKIQSNVYHSQLGDKQRDETLKNFLFNKTEVIVATIAFGM 586
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG---------HLADCVLYANL------- 618
GIDK +VR II+YG +S+E +YQE+GRAGRDG L D V + L
Sbjct: 587 GIDKHDVRLIINYGASKSVEDFYQESGRAGRDGLQSLSLIIYSLQDFVKSSFLLRNNNNY 646
Query: 619 ------------------------SSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCC 654
S +L P ++SE++ ++ + +N C
Sbjct: 647 NKYSSSSSSSQSSQSSPLSSSSSPSQFDSLEP-KKSENEKLLKFKEIL------INKVKC 699
Query: 655 RAKILVEYFGEDF---SHEKCQLCDVCVD 680
R ++L+E FGE+F ++ C CD CV+
Sbjct: 700 RRQMLLEAFGEEFIIDANNGCASCDNCVE 728
>gi|227893520|ref|ZP_04011325.1| ATP-dependent helicase [Lactobacillus ultunensis DSM 16047]
gi|227864690|gb|EEJ72111.1| ATP-dependent helicase [Lactobacillus ultunensis DSM 16047]
Length = 588
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 131/222 (59%), Gaps = 16/222 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK+ FG+ + QK+ + L + L + TG+GKS+C+Q+PAL+ V +VISPLI
Sbjct: 6 VLKQTFGYDHFRPGQKKVIDLVLNKQNVLAVMPTGAGKSVCYQVPALMNSGVTLVISPLI 65
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ L ++G+ A L S P N + ++A +G +IY+ PE RL R
Sbjct: 66 SLMKDQIDSLKQNGINAAALNSATPQEEVNPILRQAYQGKIKLIYITPE---RLAMDYFR 122
Query: 281 LAES-RGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ I L A+DE HC+S+WGHDFRP YR+L + SLK ++ALTAT
Sbjct: 123 YQLNFLDIDLVAVDEAHCISQWGHDFRPAYRQL--------LEGINSLKSKPNILALTAT 174
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
AT V++DI + L++ K FV+TSF RPNL F V +S ++
Sbjct: 175 ATPAVQDDIGEQLNIPK-ENFVITSFARPNLSFKVVNSPQNT 215
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 92/167 (55%), Gaps = 10/167 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y TRK+ S+ YL G+ AY+ + + + F ++ +V+VAT AFGMG
Sbjct: 232 IVYTNTRKKVESLTDYLAKKGISVGAYHGGMDSKERDEIQEAFQFDRFQVIVATNAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
IDK NVR +IH +++E+YYQEAGRAGRDG ++ ++ +L + +++
Sbjct: 292 IDKSNVRFVIHASSARNIESYYQEAGRAGRDGEESEAIMIYHPGDLRQYRFFIDESEADE 351
Query: 633 QTKQ-AYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVC 678
+ ++ Y+ L Y NT C + +V+YFG+D C+ C C
Sbjct: 352 KYRELQYQKLQAITDYA-NTGECLQQFIVQYFGQD-----CKPCGKC 392
>gi|402846724|ref|ZP_10895033.1| ATP-dependent DNA helicase, RecQ family [Porphyromonas sp. oral
taxon 279 str. F0450]
gi|402267416|gb|EJU16811.1| ATP-dependent DNA helicase, RecQ family [Porphyromonas sp. oral
taxon 279 str. F0450]
Length = 694
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 126/226 (55%), Gaps = 14/226 (6%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
+D ++ +L++++G+S+ + Q+E + A L D L L TG GKS+ FQ+P L+
Sbjct: 56 ADSDLSPEEVLERYWGYSTFRPLQREIVQAALDGRDTLGLMPTGGGKSITFQVPGLILPG 115
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ---KALRGMYSIIYVCPETV 271
+ +VI+PLISLM DQ L G+ A + SG KV+ L G Y +YV PE V
Sbjct: 116 LTLVITPLISLMKDQVDHLRARGIRATAIHSGMSQEKVQTALDNCLFGKYKFLYVSPERV 175
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
+ Q + ++L IDE HCV +WG+DFRP Y L LRE ++
Sbjct: 176 GS--ERFQAWLHALTVSLIVIDECHCVCQWGYDFRPSYLELPKLREQLP---------EV 224
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHS 377
P++ALTATAT +V EDI + LH G F SF RPN+ +S++ S
Sbjct: 225 PILALTATATSEVVEDIKRVLHFRPGYAFYQKSFLRPNISYSIRRS 270
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 80/144 (55%), Gaps = 6/144 (4%)
Query: 489 SFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPK 548
S R+D +KPA +L +G IIY R+ ++++ L G+ A Y+A L
Sbjct: 266 SIRRSD--DKPAMMRFILSR--VEGAAIIYCRNRQLCQTVSEALLAEGISATYYHAGLTY 321
Query: 549 SQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGH 608
++ + ++ V+VAT AFGMGIDK +VR +IH P SLE YYQEAGRAGRDG
Sbjct: 322 TEREMRQGRWMRGEVRVMVATNAFGMGIDKPDVRLVIHLTMPSSLEEYYQEAGRAGRDGE 381
Query: 609 LADCVLYANLSSMPTLLPSRRSED 632
+ V A + S + + RR +D
Sbjct: 382 HSYAV--AIVGSQDSRMLHRRLQD 403
>gi|354474937|ref|XP_003499686.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog
[Cricetulus griseus]
gi|344242328|gb|EGV98431.1| Werner syndrome ATP-dependent helicase-like [Cricetulus griseus]
Length = 1405
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 123/211 (58%), Gaps = 12/211 (5%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LK +FGH + K Q + + + L D +V+ ATG GKSLCFQ P + GK+ +VISPLI
Sbjct: 511 LKTYFGHCNFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYAGKIGIVISPLI 570
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE 283
SLM DQ +L + AC LGS Q N + L G Y IIY+ PE + L++L
Sbjct: 571 SLMEDQVLQLEMSNIPACLLGSAQSKNILGDIKL-GKYRIIYITPEFCSGNLDLLRQLDS 629
Query: 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343
+ GI L A+DE HC+S+WGHDFR +R L L+ +P++AL+ATA+
Sbjct: 630 NIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKIALPL---------VPVIALSATASSL 680
Query: 344 VREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+REDI++ L++ K + T F RPNL V
Sbjct: 681 IREDIIRCLNL-KNPQITCTGFDRPNLYLEV 710
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 138/279 (49%), Gaps = 35/279 (12%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
+G TIIY P+RK T + L + AY+A + ++ + VH F ++++ VVATIA
Sbjct: 736 EGPTIIYCPSRKMTEQVTAELGKLNLACRAYHAGMNINKRKDVHHWFLRDEIQCVVATIA 795
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYA----NLSSMPTLLP 626
FGMGI+K ++R++IHYG P+ +E+YYQE GRAGRDG + C +L+A NL+ L
Sbjct: 796 FGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNLTRHHFL-- 853
Query: 627 SRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL--------CDVC 678
+E +M++ +Y +++S CR +I++ +F ED +K L CD C
Sbjct: 854 EIHNEKFRLHKLKMMAKMEKY-LHSSQCRRQIILSHF-EDKRLQKASLDIMGTEKCCDNC 911
Query: 679 V----------DGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRP 728
D ++ +A L+ + E+ + G Q+ D+
Sbjct: 912 RSRLSRCYSNNDSEDTFQDFGPQAFQLLSAVDILQEKF-GIGIPILFLRGSNSQRLADKY 970
Query: 729 NLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIRE 767
++Q++ WW+ L+ ++ +G++ E
Sbjct: 971 RSHKLFGTGKDQTES-------WWKALSHLLIGEGFLIE 1002
>gi|390343347|ref|XP_786769.3| PREDICTED: ATP-dependent DNA helicase Q1 [Strongylocentrotus
purpuratus]
Length = 980
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 137/246 (55%), Gaps = 19/246 (7%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W K+ SL + FG + Q++ ++A L+ D ++L TG GKSLC+Q+PAL++
Sbjct: 84 WSAKLRSLCETVFGIKKYRPLQEKTMNASLSGRDVILLMPTGGGKSLCYQLPALVSKGFT 143
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETV 271
+V+SPL+SLM DQ L + GV A L S P V + R ++YV PE +
Sbjct: 144 LVVSPLLSLMEDQTMALEEIGVNATVLNSNTPPESVKDVHRQMIDARSELKLLYVTPEKI 203
Query: 272 I---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
R + L++ ++ + AIDEVHC S+WGHDFRPDY+ L +L+ F
Sbjct: 204 AKSKRFMACLEKAYKANLLTRIAIDEVHCCSQWGHDFRPDYKILGLLKRQF--------- 254
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKD 388
D P++ LTATAT+ V +D+ L + +G + F RPNL + V+ K S +A + ++
Sbjct: 255 TDTPILGLTATATMDVLDDVKGILGL-QGCQVFRAGFNRPNLFYEVR-PKPSKQAEFVEE 312
Query: 389 FCQLID 394
+LI+
Sbjct: 313 LIKLIN 318
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 107/171 (62%), Gaps = 11/171 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+T ++A+ L G++A Y+A L +VH + EN ++VVVAT+AFGMG
Sbjct: 327 IIYCFSRKDTETMAENLKKGGIQAHPYHAMLDAQYRSQVHRNWKENNIQVVVATVAFGMG 386
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM---PTLLPSRRSED 632
IDK +VR +IH+ +S+E YYQE+GRAGRD A C++Y + + T++ + ++
Sbjct: 387 IDKPDVRFVIHHSISKSMENYYQESGRAGRDDEPARCIVYYGIGDVFRQSTMVVTEQTGQ 446
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHE-KC-QLCDVCVDG 681
Q + Y M++ C + + CR ++ ++FGE + + +C ++CDVC G
Sbjct: 447 Q--KLYNMVAYC----VAPATCRRSLIGQHFGERWEGQARCNRMCDVCQSG 491
>gi|404497566|ref|YP_006721672.1| ATP-dependent DNA helicase RecQ [Geobacter metallireducens GS-15]
gi|418065091|ref|ZP_12702466.1| ATP-dependent DNA helicase RecQ [Geobacter metallireducens RCH3]
gi|78195168|gb|ABB32935.1| ATP-dependent DNA helicase RecQ [Geobacter metallireducens GS-15]
gi|373562723|gb|EHP88930.1| ATP-dependent DNA helicase RecQ [Geobacter metallireducens RCH3]
Length = 601
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 125/215 (58%), Gaps = 19/215 (8%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+ FG+ + + FQ+E ++ + D VL TG GKSLC+QIPA+ V +V+SPLIS
Sbjct: 10 LRTVFGYRTFRPFQEEIVTRLIGGGDAFVLMPTGGGKSLCYQIPAIHRPGVGIVVSPLIS 69
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR---GMYSIIYVCPETVIRLIKP--LQ 279
LM DQ L ++GV A S + + Q R G ++YV PE RL+ L+
Sbjct: 70 LMKDQVDTLRENGVAAAAYNSAMGEREARQVLARLHAGELDLLYVAPE---RLMTDAFLE 126
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
RL E +ALFAIDE HCVS+WGHDFRP+Y G L+ L +P++ALTAT
Sbjct: 127 RLREI-PVALFAIDEAHCVSQWGHDFRPEY---------VGLGRLRGLFPGVPVIALTAT 176
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
A +Q R DI+ L + +V T F RPN+R++V
Sbjct: 177 ADVQTRSDIIDRLGLRDAQVYV-TGFDRPNIRYTV 210
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 107/180 (59%), Gaps = 6/180 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK +A L G++AAAY+A L + RV F + + VVVAT+AFGMG
Sbjct: 233 IVYALSRKRVEEVAGKLRDAGIEAAAYHAGLADGERGRVQEAFLRDDVRVVVATVAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSED 632
IDK NVR ++HY P+++E+YYQE GRAGRDG A+ +L Y +++ +L+ S + +
Sbjct: 293 IDKPNVRFVVHYDLPKNIESYYQETGRAGRDGLPAEALLLFGYGDIAVSRSLIESGNNPE 352
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
Q + L+ + CR + L+ YFGE + E C CD+C+D PPE + E+A
Sbjct: 353 QVRIELHKLNAMVGFA-EAGTCRREALLGYFGERLA-EPCGNCDLCLD-PPESFDATEDA 409
>gi|194744401|ref|XP_001954683.1| GF16620 [Drosophila ananassae]
gi|190627720|gb|EDV43244.1| GF16620 [Drosophila ananassae]
Length = 1512
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 129/221 (58%), Gaps = 18/221 (8%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG S + Q + ++A L +DC VL TG GKSLC+Q+PA+LT V +VISPL SL+ D
Sbjct: 685 FGLKSFRPNQLQVINASLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFD 744
Query: 229 QCSKLSKHGVTACFLGSGQPDNKV-----EQKALRGMYSIIYVCPETV---IRLIKPLQR 280
Q +KL+ + A L Q + +A M ++YV PE + R L
Sbjct: 745 QTNKLASLDICAKSLSGEQKLADAMAIYRDLEAQPPMVKLLYVTPEKISSSARFQDTLDT 804
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L + I+ F IDE HCVS+WGHDFRPDY++L +L++ F ++P +ALTATA
Sbjct: 805 LNANNYISRFVIDEAHCVSQWGHDFRPDYKKLGILKKRFP---------NVPTIALTATA 855
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
T +VR DIL L++ K K+ L+SF R NLR+ V K +S
Sbjct: 856 TPRVRLDILAQLNL-KHCKWFLSSFNRSNLRYKVMPKKGAS 895
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 103/175 (58%), Gaps = 10/175 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RKE +AK +C GV+A AY+A L ++ ++ KL V+ ATIAFGMG
Sbjct: 914 IIYCLSRKECDDVAKKMCKDGVRAVAYHAGLTDNERETRQKDWLTGKLRVICATIAFGMG 973
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM---PTLLPSRRS-- 630
IDK +VR ++HY P+S+E +YQEAGRAGRDG +ADC+LY N + M +L + ++
Sbjct: 974 IDKPDVRFVLHYSLPKSIEGFYQEAGRAGRDGEVADCILYYNYADMLRIKKMLDADKALQ 1033
Query: 631 EDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-----QLCDVCVD 680
+ K L+ Y N CR ++YFGE F+ E+C CD C++
Sbjct: 1034 YNVKKMHIDNLNRIVGYCENLMDCRRAQQLDYFGEHFTSEQCLENRQTACDNCIN 1088
>gi|307731261|ref|YP_003908485.1| ATP-dependent DNA helicase RecQ [Burkholderia sp. CCGE1003]
gi|307585796|gb|ADN59194.1| ATP-dependent DNA helicase RecQ [Burkholderia sp. CCGE1003]
Length = 615
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 131/219 (59%), Gaps = 21/219 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVI 219
+L + FG+ + + Q E + + DCLVL TG GKSLC+QIP+L+ + +V+
Sbjct: 7 ILNEVFGYPAFRGQQGEIVEHVASGGDCLVLMPTGGGKSLCYQIPSLVRRERGLGTGIVV 66
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L++ GV A +L S + ++ALR G ++YV PE RL+
Sbjct: 67 SPLIALMQDQVAALTEVGVRAAYLNSTLSSAEAMATERALRDGEIDLLYVAPE---RLLT 123
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P Q L E I LFAIDE HCVS+WGHDFRP+Y +LSVL E F ++P +A
Sbjct: 124 PRFQELLERTRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------NVPRIA 174
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA R++I+ L + FV +SF RPN+R+ +
Sbjct: 175 LTATADAITRDEIIHRLALDDARVFV-SSFDRPNIRYRI 212
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 148/322 (45%), Gaps = 34/322 (10%)
Query: 458 EFLENDSVDDWDVACGEFYGHSPH-RDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLT- 515
E + ++DD V F P+ R R ++ RT LL+ + DG T
Sbjct: 186 EIIHRLALDDARVFVSSF--DRPNIRYRIVEKDNARTQLLD-----FIRAEHTRADGTTD 238
Query: 516 --IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAF 572
++Y +R++ A++L G++A Y+A + + + R+ H E F + V+ ATIAF
Sbjct: 239 AGVVYCLSRRKVEETAEWLKEKGMRALPYHAGM-EFETRQKHQEMFQREEGIVMCATIAF 297
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPSRR 629
GMGIDK +VR + H P+S+E YYQE GRAGRDG ++ + L + ++
Sbjct: 298 GMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPSNAWMAYGLGDVVQQRKMIDESD 357
Query: 630 SEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLK 689
++D K+ D + CR L+ YFGE S + C CD C++ PP +
Sbjct: 358 ADDAHKRVQTGKLDALLGLCEAATCRRVRLLAYFGE--SSKPCGNCDNCLE-PPATWDAT 414
Query: 690 EEANILM------QVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQK 743
EA + + Q + +N + + D I G + +K + R + K+ I
Sbjct: 415 REAQMALSCVFRAQRASGFNFGAGHLID---ILRGNRSEKILQRGHEKLTTFGIGA---- 467
Query: 744 YLATDLLWWRGLARIMENKGYI 765
A WR + R + GY+
Sbjct: 468 --ALGEPEWRAVFRQLVAFGYL 487
>gi|296388148|ref|ZP_06877623.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa PAb1]
Length = 460
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 130/216 (60%), Gaps = 19/216 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK FG+ + + Q + D LVL TG GKSLCFQ+PALL + VV+SPLI
Sbjct: 8 ILKDVFGYDAFRGNQARIIERVAEGGDALVLMPTGGGKSLCFQVPALLREGLTVVVSPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGSG-QPDNK--VEQKALRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ + L + GV A L S P+ + + ++ RG ++Y+ PE ++ R++ L
Sbjct: 68 ALMEDQVATLDELGVPAVALNSTLNPEQQRDIAERLQRGEIKLLYLAPERLVQPRMLAFL 127
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
QRL + LFAIDE HCVS+WGHDFRP+Y +L L E F +P +ALTA
Sbjct: 128 QRLP----VGLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFP---------QVPRIALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA ++ RE++++ LH+ +F L+SF RPN+ + +
Sbjct: 175 TADMRTREEMIQRLHLQNAEQF-LSSFDRPNIFYRI 209
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 112/209 (53%), Gaps = 24/209 (11%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L L E D I+Y +RK+ +A++L G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLGFLSERRGDA-GIVYCLSRKKVEEVAEFLGNQGFPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A L ++LR H + F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGL-SNELRAHHQKRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYR-----MLSDCFRYGMNTS 652
GRAGRDG AD + L + L + S +++ K+ R ML+ C +
Sbjct: 317 GRAGRDGLPADAWMAYGLQDVLLLRQMMQSSEGDERHKRVERHKLEAMLALC-----EET 371
Query: 653 CCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
CR + L+ YF E+ + C CD CVDG
Sbjct: 372 RCRRQALLAYFDEEMP-QPCGHCDNCVDG 399
>gi|294055968|ref|YP_003549626.1| RecQ family ATP-dependent DNA helicase [Coraliomargarita
akajimensis DSM 45221]
gi|293615301|gb|ADE55456.1| ATP-dependent DNA helicase, RecQ family [Coraliomargarita
akajimensis DSM 45221]
Length = 709
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 136/242 (56%), Gaps = 21/242 (8%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+ HFG + + Q+ + + LA D LV+ TG GKSLC+Q+PALL V +V+SPLI+
Sbjct: 7 LQTHFGLTEFREPQRAIVESVLAGKDTLVVMPTGGGKSLCYQLPALLLPGVTLVVSPLIA 66
Query: 225 LMHDQCSKLSKHGVTACFLGSGQP--DNKVEQKALR-GMYSIIYVCPETVIRLIKPLQRL 281
LM DQ L G+ A L S Q + + +A+R G ++YV PE + R
Sbjct: 67 LMKDQVDSLQAKGLPAGLLNSSQSLDEQRASLEAIRQGKLKMVYVAPERFRS--QSFIRA 124
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
+ I+L AIDE HC+S+WGHDFRPDY+RL +R G+ P +ALTATAT
Sbjct: 125 LPAEAISLLAIDEAHCLSQWGHDFRPDYKRLGDVRTALGSP---------PCVALTATAT 175
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKK 401
V+ DI +L M T+FV F R NL F V+ KT+S A D + ++ ++ K
Sbjct: 176 PDVQADICDTLAMQSPTEFV-AGFARDNLSFKVR--KTNSDA----DKLEAVERLIRRHK 228
Query: 402 TG 403
TG
Sbjct: 229 TG 230
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 54/97 (55%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y TRK ++A + F Y+ + + F + VVVAT AFGMG
Sbjct: 231 IVYCATRKSVEAVAAKMEPFAAPLIRYHGGMSDQERSTAQDVFMSGRASVVVATNAFGMG 290
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC 612
ID+ ++R + HY P S+EAYYQE GRAGRDG A C
Sbjct: 291 IDRPDIRFVCHYEMPGSVEAYYQEGGRAGRDGKPASC 327
>gi|119476327|ref|ZP_01616678.1| ATP-dependent DNA helicase RecQ [marine gamma proteobacterium
HTCC2143]
gi|119450191|gb|EAW31426.1| ATP-dependent DNA helicase RecQ [marine gamma proteobacterium
HTCC2143]
Length = 610
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 130/214 (60%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ S + Q+E + + +A +D LVL TG GKS+C+QIPAL+ V ++ISPLI
Sbjct: 13 ILNSIFGYPSFRGHQEEIIDSIVAGNDALVLMPTGGGKSMCYQIPALVRDGVGIIISPLI 72
Query: 224 SLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LM DQ + + GV A FL S +VEQ+ G ++YV PE +++ Q
Sbjct: 73 ALMQDQVDAMQQLGVHAAFLNSTLTVMEQRRVEQQLQDGQLDLLYVAPERLLQQ-NTFQL 131
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L++ IALFAIDE HCV++WGHDFR DY L VL +NF D+P +ALTATA
Sbjct: 132 LSQCE-IALFAIDEAHCVAQWGHDFRADYLGLGVLHDNFP---------DVPRVALTATA 181
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+ + +I + L ++ F+ + F RPN+R+++
Sbjct: 182 DSRTQNEIQQRLTLTDAHCFI-SGFDRPNIRYAI 214
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 116/220 (52%), Gaps = 11/220 (5%)
Query: 487 DRSFERTDLLNKPAER---LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYN 543
DR R + NK A + LS L+ L + I+Y +RK+ S A++LC G A Y+
Sbjct: 206 DRPNIRYAIANKTAPKKQLLSFLRNRLHEA-GIVYCLSRKKVESTAQWLCEQGYTALPYH 264
Query: 544 ASLPKSQLRRVH-TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
A L S+LR H + F ++VATIAFGMGIDK +VR + H P+S+EAYYQE GR
Sbjct: 265 AGL-SSELRAYHQSRFLREDAVIIVATIAFGMGIDKPDVRFVAHLDLPKSIEAYYQETGR 323
Query: 603 AGRDGHLADCVLYANLSS---MPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG +D + L M + + DQ K+ R D + CR ++L
Sbjct: 324 AGRDGLPSDAWMVYGLQDVVRMQQMQGESTASDQFKRTERHKLDAMLGLCEVTSCRRQVL 383
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
+ YFG D + ++C CD C PPE + E A ++ I
Sbjct: 384 LNYFG-DQAPDQCGYCDNC-QIPPETWDASEAAQKVLSSI 421
>gi|113461847|ref|YP_719916.1| ATP-dependent DNA helicase RecQ [Haemophilus somnus 129PT]
gi|112823890|gb|ABI25979.1| ATP-dependent DNA helicase RecQ [Haemophilus somnus 129PT]
Length = 624
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 124/214 (57%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ S + Q E + A LA D LV+ ATG GKSLC+QIPAL + +VISPLI
Sbjct: 28 ILHSVFGYQSFRKGQLEVIEATLAKKDSLVIMATGGGKSLCYQIPALCFSGLTLVISPLI 87
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +G+ A +L S Q + V+ KA+ G ++Y+ PE L
Sbjct: 88 SLMKDQVDQLLANGINADYLNSSQTFEQQQLVQNKAMSGKLKLLYISPEKA--LTTSFFH 145
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
++ A+DE HC+S+WGHDFRP+Y +L L+ +F D P+MALTATA
Sbjct: 146 FISHCKVSFIAVDETHCISQWGHDFRPEYTQLGGLKASFP---------DAPIMALTATA 196
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
R+DIL L +S ++ SF RPN+R+S+
Sbjct: 197 DQATRQDILIHLKLSNPHIYI-GSFDRPNIRYSL 229
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 149/290 (51%), Gaps = 17/290 (5%)
Query: 487 DRSFERTDLLNK--PAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544
DR R L+ K P E+LS + IIY +R + IA+ L G+ A AY+A
Sbjct: 221 DRPNIRYSLVEKFKPMEQLSQFIAKQKGKSGIIYCNSRNKVERIAESLRQKGISAEAYHA 280
Query: 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAG 604
+ Q V F + +++VVATIAFGMGI+K NVR + H+ P+S+EAYYQE GRAG
Sbjct: 281 GMSNEQREFVQRAFQHDNVQIVVATIAFGMGINKSNVRFVAHFDLPRSIEAYYQETGRAG 340
Query: 605 RDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVE 661
RD A+ VL+ A+ + + +L + Q + L + + CR +L+
Sbjct: 341 RDDLPAEAVLFYEPADYAWLQKVLLEKPDIPQRQIELHKLQSIGEFA-ESQICRRLVLLN 399
Query: 662 YFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKK 721
YFGE + + C CD+C+D PP+ + +A +M I ++ +M + G +
Sbjct: 400 YFGE-YQQKPCNNCDICLD-PPKKYDGLVDAQKVMSAIYRVGQRFGAM-YIIAVLRGSQN 456
Query: 722 QKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
QK + + K+ V I +++S++Y W+ + R + + G I++ D
Sbjct: 457 QKIKEYQHDKLSVFGIGKDRSREY-------WQSVIRQLIHLGLIKQVID 499
>gi|168029873|ref|XP_001767449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681345|gb|EDQ67773.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 655
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 146/255 (57%), Gaps = 22/255 (8%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
+W+ + + FG S + Q E ++A ++ D +V+ A G GKSLC+Q+PA+L
Sbjct: 67 EWDNRAADIRLNLFGIKSYRQNQHEIINAVMSGRDVIVIMAAGGGKSLCYQLPAMLRTGT 126
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL-------RGMYSIIYVCP 268
+VISPL+SL+ DQ L+ G++A L S K E+K++ G I+YV P
Sbjct: 127 ALVISPLLSLIQDQVMGLTALGISASMLTS--TTTKDEEKSIYKSLEKGEGDLKILYVTP 184
Query: 269 ETVI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLK 325
E V R + L++ ++L AIDE HC S+WGHDFRPDY++L +L++ F
Sbjct: 185 EKVAKSKRFVSKLEKCNHGGRLSLIAIDEAHCCSQWGHDFRPDYKQLGILKKQFP----- 239
Query: 326 SLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASY 385
+P++ALTATAT +V+ D+ + L +++ KFV ++ RPNL + V+ K + A+
Sbjct: 240 ----RVPMIALTATATERVQTDLREMLQITRCEKFV-STVNRPNLFYEVREKKANGSAAI 294
Query: 386 KKDFCQLIDIYTKKK 400
++D Y+KK+
Sbjct: 295 DDIASFILDKYSKKE 309
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 93/166 (56%), Gaps = 10/166 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RKE +A L G+ AA Y+A + VH + NKL+V+V T+AFGMG
Sbjct: 312 IVYCFSRKECEQVAAELRKRGISAAHYHADMKPETRSSVHMRWSTNKLQVIVGTVAFGMG 371
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K +VR +IH+ +SLE YYQE+GRAGRDG A C+LY P LP + S +
Sbjct: 372 INKPDVRFVIHHSLSKSLETYYQESGRAGRDGLPAHCLLYFR----PADLPRQSSMVFAE 427
Query: 636 QA--YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ-LCDVC 678
A + + + C R+ + CR +FGE +KC +CD C
Sbjct: 428 MAGLHNLYAIC-RFCQSKQACRRAAFFRHFGEKI--QKCNGMCDNC 470
>gi|270157372|ref|ZP_06186029.1| ATP-dependent DNA helicase RecQ [Legionella longbeachae D-4968]
gi|289164234|ref|YP_003454372.1| ATP-dependent DNA helicase [Legionella longbeachae NSW150]
gi|269989397|gb|EEZ95651.1| ATP-dependent DNA helicase RecQ [Legionella longbeachae D-4968]
gi|288857407|emb|CBJ11235.1| ATP-dependent DNA helicase [Legionella longbeachae NSW150]
Length = 604
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 131/217 (60%), Gaps = 20/217 (9%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+LK++FG S + Q++ + +A +D LVL TG GKSLC+QIPAL+ V +V+SPL
Sbjct: 14 SVLKEYFGFDSFRPPQEDIIKDVIAGNDVLVLMPTGGGKSLCYQIPALIRPGVGIVVSPL 73
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL-----RGMYSIIYVCPETVIRLIKP 277
I+LM DQ + L G+ A + S +E K + G ++Y+ PE +I I
Sbjct: 74 IALMEDQVTALRLQGIRAAYYNSSL--TSIEAKNVLIQLHHGELDLLYIAPERLIN-ISF 130
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L RL E IALFAIDE HC+S+WGHDFRP+Y L VL+ +F A +P++ALT
Sbjct: 131 LDRLKEC-NIALFAIDEAHCISQWGHDFRPEYAALGVLKTHFPA---------VPIVALT 180
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ATA Q R+DI+ L+ K++ SF RPN+ + V
Sbjct: 181 ATADRQTRQDIVAKLNYIPN-KYI-ASFNRPNIHYKV 215
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 112/202 (55%), Gaps = 6/202 (2%)
Query: 501 ERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE 560
++L+ +E IIY TR + + L G KA AY+A L ++ + V T F
Sbjct: 223 KQLNQFLSSVEQQSGIIYCGTRNSVENTVEKLQKMGFKARAYHAGLSHAERKEVQTLFRY 282
Query: 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---AN 617
+++++VVATIAFGMGIDK NVR ++HY P+++EAYYQE GRAGRDG A +L A+
Sbjct: 283 DRIDIVVATIAFGMGIDKPNVRYVVHYDLPKNIEAYYQETGRAGRDGLPAQALLLYDAAD 342
Query: 618 LSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDV 677
+ + + + + E+Q L+ + S CR +IL+ YF E F KC CDV
Sbjct: 343 SARLRSWIVNSPLEEQRFVETNKLNHMLAFA-EASHCRRQILLRYFDESFE-TKCDYCDV 400
Query: 678 CVDGPPEMKNLKEEANILMQVI 699
C D PP + E+A + I
Sbjct: 401 C-DNPPVTTDATEDAQKFLSCI 421
>gi|449516333|ref|XP_004165201.1| PREDICTED: mediator of RNA polymerase II transcription subunit
34-like [Cucumis sativus]
Length = 586
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 139/235 (59%), Gaps = 18/235 (7%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W+ + + + FG SS + Q+E ++A ++ D LV+ A G GKSLC+Q+PALL +
Sbjct: 74 WDSEADDVKLNIFGISSYRANQREIVNAVMSGRDVLVIMAAGGGKSLCYQLPALLYDGIA 133
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSG--QPDNKVEQKAL---RGMYSIIYVCPETV 271
+V+SPL+SL+ DQ L+ G++A L S + D K+ K L G I+YV PE V
Sbjct: 134 LVVSPLLSLIQDQVMGLAALGISASMLTSATSKEDEKLIYKNLEKGEGSMKILYVTPEKV 193
Query: 272 I---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
R + L++ + ++L AIDE HC S+WGHDFRPDY+ L +L+ F
Sbjct: 194 SKSKRFMSKLEKCYHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKTQFP-------- 245
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
+ P++ALTATAT +V+ D+++ L + K KFV ++ RPNL + V+ + S+
Sbjct: 246 -NAPVIALTATATQRVQNDLVEMLRIPKYVKFV-STVNRPNLFYMVREKSSVSKV 298
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 5/166 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RKE +AK L G+ A Y+A + +VH + ++L+V+V T+AFGMG
Sbjct: 318 IIYCFSRKECEQVAKELRLRGISADHYHADMDSVAREKVHMRWSNSRLQVIVGTVAFGMG 377
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K +VR +IH+ +S+E YYQE+GRAGRDG ++C+LY +P E+
Sbjct: 378 INKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYYRPGDVPRQSSMVFYEN--- 434
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
L +Y + CR + +F E + C C V G
Sbjct: 435 SGLENLYGIVQYCQSRRQCRRSVFFRHFAEPL--KDCNGCFVTHSG 478
>gi|426405111|ref|YP_007024082.1| ATP-dependent DNA helicase RecQ [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425861779|gb|AFY02815.1| ATP-dependent DNA helicase RecQ [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 530
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 131/214 (61%), Gaps = 15/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LKK+F S + Q+E + + + D L + TG GKSLC+Q PA+ T K+V+VISPLI+
Sbjct: 17 LKKYFNLSGFRRGQQEIIESVMGGRDVLAVLPTGGGKSLCYQYPAVATQKLVIVISPLIA 76
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM DQ + L ++G+ A L SGQ D+ +V + +G ++Y+ PE + + R
Sbjct: 77 LMKDQVASLRRYGIPAGALHSGQSDDDKREVFAEINKGGAFVLYLSPERAQK--EGFHRW 134
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
++R + LFAIDE HCVS+WGHDFR +Y +L+V LK L D+P++ALTA+AT
Sbjct: 135 VQNRQVGLFAIDEAHCVSQWGHDFREEYAQLNV---------LKKLCPDVPVLALTASAT 185
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
V +DI K L + K + V F+R NL + V+
Sbjct: 186 PTVLDDISKHLKLQKPERMV-HGFYRSNLYYQVE 218
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 95/182 (52%), Gaps = 12/182 (6%)
Query: 504 SMLQEPLEDGLTIIYVPTRKETLSIAKYLCG-FGVKAAAYNASLPKSQLRRVHTEFHENK 562
S+ Q P +G I+Y TRK T SIA +L FG Y+A L + +
Sbjct: 233 SIKQTP--EGRIIVYCGTRKVTESIASFLQKKFGKSVGYYHAGLTSDVRTSTQEAYAKGD 290
Query: 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV-LYA----N 617
L ++VAT AFGMGID+ +VR ++H+ P +++A YQE GRAGRDG + C+ LY+
Sbjct: 291 LRILVATNAFGMGIDQPDVRLVVHFQIPANIDALYQEMGRAGRDGEHSTCLTLYSKKDKG 350
Query: 618 LSSMPTLLPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCD 676
L S + S + D+ K A +R L Y C A+IL Y+ + E+C CD
Sbjct: 351 LQSF--FIHSSEAPDEIKDARWRNLDALVNYSEGGECRHAEILT-YYKDSQRIERCGHCD 407
Query: 677 VC 678
C
Sbjct: 408 SC 409
>gi|384086932|ref|ZP_09998107.1| ATP-dependent DNA helicase RecQ [Acidithiobacillus thiooxidans ATCC
19377]
Length = 602
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 133/224 (59%), Gaps = 19/224 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG+ + Q+E ++ ++ D LVL TG GKSLC+QIPA+ VVISPLI
Sbjct: 10 ILRHTFGYEQFRAPQEEVIATLMSGQDALVLMPTGGGKSLCYQIPAIARPGAGVVISPLI 69
Query: 224 SLMHDQCSKLSKHGVTACFLGSG-QPDNKVE-QKALR-GMYSIIYVCPETVI--RLIKPL 278
+LM DQ + L + GV A L S QP E ++ALR G ++Y+ PE ++ R ++ L
Sbjct: 70 ALMEDQVNALRQAGVAAAALNSSIQPREIRETEEALRSGQLDLLYIAPERLLQDRTLRLL 129
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
Q+ + LFAIDE HCVS+WGHDFRP+Y +L VL E F A IP +ALTA
Sbjct: 130 QQCQ----VNLFAIDEAHCVSQWGHDFRPEYLQLKVLHERFPA---------IPRIALTA 176
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
TA + R +I++ L + + F SF RPN+R+ + S +R
Sbjct: 177 TADPKTRLEIIERLGLQRARIFT-RSFDRPNIRYHIHSSSQGAR 219
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 91/170 (53%), Gaps = 4/170 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK IA +L G+ A Y+A L + RR F ++ ++VATIAFGMG
Sbjct: 236 IVYCLSRKRVEEIAAWLQAEGLDALPYHAGLSADERRRHQQRFQRDEGVIIVATIAFGMG 295
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSED 632
IDK NVR + H P+S+EAYYQE GRAGRDG A+ ++ L + L + ++
Sbjct: 296 IDKPNVRFVAHLNLPKSIEAYYQETGRAGRDGLPAEAWMHYGLQDVVQLRQMIQQSEADQ 355
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
Q KQ D T CR + L+ YFGE + + C CD C+ P
Sbjct: 356 QRKQMEGQKLDAMLALCETVACRRQTLLSYFGETLA-QPCGNCDNCLTPP 404
>gi|170718152|ref|YP_001785180.1| ATP-dependent DNA helicase RecQ [Haemophilus somnus 2336]
gi|168826281|gb|ACA31652.1| ATP-dependent DNA helicase RecQ [Haemophilus somnus 2336]
Length = 624
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 124/214 (57%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L FG+ S + Q E + A LA D LV+ ATG GKSLC+QIPAL + +VISPLI
Sbjct: 28 ILHSVFGYQSFRKGQLEVIEATLAKKDSLVIMATGGGKSLCYQIPALCFSGLTLVISPLI 87
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +G+ A +L S Q + V+ KA+ G ++Y+ PE L
Sbjct: 88 SLMKDQVDQLLANGINADYLNSSQTFEQQQLVQNKAMSGKLKLLYISPEKA--LTTSFFH 145
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
++ A+DE HC+S+WGHDFRP+Y +L L+ +F D P+MALTATA
Sbjct: 146 FISHCKVSFIAVDETHCISQWGHDFRPEYTQLGGLKASFP---------DAPIMALTATA 196
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
R+DIL L +S ++ SF RPN+R+S+
Sbjct: 197 DQATRQDILIHLKLSNPHIYI-GSFDRPNIRYSL 229
Score = 125 bits (314), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 149/290 (51%), Gaps = 17/290 (5%)
Query: 487 DRSFERTDLLNK--PAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544
DR R L+ K P E+LS + IIY +R + IA+ L G+ A AY+A
Sbjct: 221 DRPNIRYSLVEKFKPMEQLSQFIAKQKGKNGIIYCNSRNKVERIAESLRQKGISAEAYHA 280
Query: 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAG 604
+ Q V F + +++VVATIAFGMGI+K NVR + H+ P+S+EAYYQE GRAG
Sbjct: 281 GMSNEQREFVQRAFQHDNVQIVVATIAFGMGINKSNVRFVAHFDLPRSIEAYYQETGRAG 340
Query: 605 RDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVE 661
RD A+ VL+ A+ + + +L + Q + L + + CR +L+
Sbjct: 341 RDDLPAEAVLFYEPADYAWLQKVLLEKPDIPQRQIELHKLQSIGEFA-ESQICRRLVLLN 399
Query: 662 YFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKK 721
YFGE + + C CD+C+D PP+ + +A +M I ++ +M + G +
Sbjct: 400 YFGE-YQQKPCNNCDICLD-PPKKYDGLVDAQKVMSAIYRVGQRFGAM-YIIAVLRGSQN 456
Query: 722 QKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIREGDD 770
QK + + K+ V I +++S++Y W+ + R + + G I++ D
Sbjct: 457 QKIKEYQHDKLSVFGIGKDRSREY-------WQSVIRQLIHLGLIKQVID 499
>gi|409422690|ref|ZP_11259777.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. HYS]
Length = 712
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 128/219 (58%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIECVAKGGDALVLMPTGGGKSLCFQVPALLRPGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + ++ + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLDELGVAAASLNSTLSAEQQRELAGRIRRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + + IALFAIDE HCVS+WGHDFRP+Y +L L E F ++P +A
Sbjct: 121 PRMLDFLRTLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFP---------NVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA ++ RE+I+ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADMRTREEIVTRLHLQNAERF-LSSFDRPNIFYRI 209
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 90/169 (53%), Gaps = 4/169 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+ +A YLC G A Y+A LP F + ++VATIAFGMG
Sbjct: 232 IVYCLSRKKVDDVAAYLCEQGFPALPYHAGLPAETRASNQRRFLNEEGLIMVATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSED 632
IDK NVR + H P+SLEAYYQE GRAGRDG AD + L M L L + ++
Sbjct: 292 IDKPNVRFVAHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDMVMLKQMLQNSEGDE 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
+ K+ + D + CR + L+ YF E+ + C CD C+DG
Sbjct: 352 RHKRIEQHKLDAMLALCEETRCRRQTLLNYFDEELP-QPCGHCDNCIDG 399
>gi|212710158|ref|ZP_03318286.1| hypothetical protein PROVALCAL_01212 [Providencia alcalifaciens DSM
30120]
gi|212687157|gb|EEB46685.1| hypothetical protein PROVALCAL_01212 [Providencia alcalifaciens DSM
30120]
Length = 608
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 129/217 (59%), Gaps = 19/217 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++L FG+ S + Q + L DCLVL TG GKSLC+Q+PAL+ + +V+SPL
Sbjct: 15 NVLNSTFGYQSFRPGQDAVIGGILDGRDCLVLMPTGGGKSLCYQVPALVKQGITLVVSPL 74
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYVCPETVIRLIKP-- 277
ISLM DQ +L HGV A L S Q ++ ++ +G ++YV PE RL+
Sbjct: 75 ISLMKDQVDQLKLHGVEAACLNSSQTSLEQRQIMEQCTQGKIKLLYVAPE---RLLTDYF 131
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
+Q+L ES IAL A+DE HC+S+WGHDFRP+YR L LR ++P+MALT
Sbjct: 132 IQQL-ESWDIALLAVDEAHCISQWGHDFRPEYRSLGQLRRALP---------NVPVMALT 181
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ATA R DI++ L ++ V +SF RPN+R+++
Sbjct: 182 ATADETTRADIVRLLELNDPLIHV-SSFDRPNIRYTL 217
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 107/192 (55%), Gaps = 13/192 (6%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP ++L + + I+Y +R + A+ L G+ AAY+A L +Q V
Sbjct: 222 KPLDQLWFFIKAQKGKSGIVYCNSRSKVEETAERLQKRGLSVAAYHAGLENAQREWVQDA 281
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F ++ L++VVAT+AFGMGI+K NVR + H+ P+++EAYYQE GRAGRDG A+ +L+ +
Sbjct: 282 FQKDNLQIVVATVAFGMGINKSNVRFVAHFDIPRNIEAYYQETGRAGRDGVEAEAILFYD 341
Query: 618 LSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMN-------TSCCRAKILVEYFGEDFSHE 670
+ M L RR ++ M D R+ +N CR +L+ YFGE+ +
Sbjct: 342 PADMAWL---RRCLEEKPAG--MQQDIERHKLNAIAAFAEAQTCRRLVLLNYFGEN-RQK 395
Query: 671 KCQLCDVCVDGP 682
C CD+C+D P
Sbjct: 396 PCGNCDICLDPP 407
>gi|374261468|ref|ZP_09620050.1| hypothetical protein LDG_6438 [Legionella drancourtii LLAP12]
gi|363538095|gb|EHL31507.1| hypothetical protein LDG_6438 [Legionella drancourtii LLAP12]
Length = 607
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 132/217 (60%), Gaps = 20/217 (9%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++LK++FG S +N Q++ + +A +D LVL TG GKSLC+QIP+L+ V +V+SPL
Sbjct: 16 TVLKEYFGFDSFRNPQEDIIKDVIAGNDVLVLMPTGGGKSLCYQIPSLVRPGVGIVVSPL 75
Query: 223 ISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKP-- 277
I+LM DQ + L G+ A + S + KV + ++Y+ PE RLI
Sbjct: 76 IALMEDQVTALRLQGIRAAYYNSSLTSEEAKKVLAQLHNAELDLLYIAPE---RLISASF 132
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L+RL E I+LFAIDE HC+S+WGHDFRP+Y L +L+E+F IP++ALT
Sbjct: 133 LERLQECH-ISLFAIDEAHCISQWGHDFRPEYAALGLLKEHFPT---------IPIIALT 182
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ATA Q R+DI+ L+ + K + SF RPN+ + V
Sbjct: 183 ATADKQTRQDIVVKLNYT--PKKYIASFNRPNIHYKV 217
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 113/203 (55%), Gaps = 6/203 (2%)
Query: 500 AERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFH 559
A++L+ + +E IIY TR S+A+ L G KA AY+A L + + V F
Sbjct: 224 AKQLNQFLQSVEQQSGIIYCGTRNSVESLAEKLQDMGFKARAYHAGLSHKERKEVQNLFR 283
Query: 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---A 616
+++++VVATIAFGMGIDK NVR + H+ P+++E YYQE GRAGRDG A +L A
Sbjct: 284 YDRIDIVVATIAFGMGIDKPNVRFVAHHDLPKNIEGYYQETGRAGRDGLPAQALLLYDAA 343
Query: 617 NLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCD 676
+ + + + + + ++Q + L+ + S CR +IL+ YF E E C+ CD
Sbjct: 344 DSARLRSWIINTPLDEQRRVETNKLNHMLAFA-EASHCRRQILLRYFDEPCDSE-CKYCD 401
Query: 677 VCVDGPPEMKNLKEEANILMQVI 699
VC D PP + E+A + +
Sbjct: 402 VC-DNPPITADATEDAQKFLSCV 423
>gi|50292717|ref|XP_448791.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528104|emb|CAG61761.1| unnamed protein product [Candida glabrata]
Length = 1371
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 131/229 (57%), Gaps = 20/229 (8%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK-- 214
W +V LK F +S ++ Q+EA++A L+ D VL TG GKSLC+Q+PA++ G
Sbjct: 611 WTKEVYKKLKTVFNLTSFRSNQEEAINATLSGKDVFVLMPTGGGKSLCYQLPAIVKGGCT 670
Query: 215 --VVVVISPLISLMHDQCSKLSKHGVTACFLGS-GQPDNKVEQKAL--RGMYSIIYVCPE 269
+VISPLISLM DQ L K V A L S G D K L G +IY+ PE
Sbjct: 671 KGTTIVISPLISLMQDQVEHLQKLNVKARMLSSKGGIDEKNHTFNLFINGFLDLIYLSPE 730
Query: 270 TVI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
+ + +++L +++ +A +DE HCVS WGHDFRPDY++LS + +
Sbjct: 731 MISVSEKCKTAIEKLYQNKQLARIVVDEAHCVSNWGHDFRPDYKQLSYFKVQYP------ 784
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
DIP+MALTATA+ QV+ DI+ +L + K F+ SF R NL + V+
Sbjct: 785 ---DIPMMALTATASEQVQMDIVFNLKL-KDNLFLRQSFNRTNLYYEVR 829
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 109/205 (53%), Gaps = 14/205 (6%)
Query: 488 RSFERTDLL--------NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539
+SF RT+L N E +++ + IIY ++ A+ + G+K
Sbjct: 817 QSFNRTNLYYEVRKKTKNTIFEICDTIKQQFRNQTGIIYCHSKNSCEQTAQQMQRNGIKC 876
Query: 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599
A Y+A + + +V E+ + L+V+ AT+AFGMGIDK +VR + H+ P++LE YYQE
Sbjct: 877 AYYHAGMEADERLQVQREWQNDNLQVICATVAFGMGIDKADVRFVFHFTVPRTLEGYYQE 936
Query: 600 AGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRM--LSDCFRYGMNTSCC 654
GRAGRDG+ + C+ Y ++ +M T++ ++ D + + L Y N + C
Sbjct: 937 TGRAGRDGNYSYCITYYSFRDVRTMQTMIQKDKNLDGINKQKHLDKLQQVTAYCENDTDC 996
Query: 655 RAKILVEYFGEDFSHEKC-QLCDVC 678
R K+++ YF E+F C + CD C
Sbjct: 997 RRKLVLSYFSEEFDPINCNKNCDNC 1021
>gi|449446630|ref|XP_004141074.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Cucumis
sativus]
gi|449488107|ref|XP_004157941.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Cucumis
sativus]
Length = 729
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 134/224 (59%), Gaps = 19/224 (8%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ LL+ HFGHS + Q E + A L+ DC L TG GKS+C+QIPAL + +V+V+
Sbjct: 24 LTKLLRWHFGHSEFRGKQLETIEAVLSGKDCFCLMPTGGGKSVCYQIPALASNGMVLVVC 83
Query: 221 PLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQ--KALRGMYSIIYVCPETVIR-- 273
PLI+LM +Q L + G++A +L S Q NK+ + + + ++YV PE +
Sbjct: 84 PLIALMENQVMALKEKGISAEYLSSTQSTQAKNKIHEDLNSSKPTLRLLYVTPELIATSG 143
Query: 274 LIKPLQRLAESRGIA-LFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
+ L ++ SRG+ L AIDE HC+S WGHDFRP YR+LS LR +IP
Sbjct: 144 FMAKLMKIY-SRGLLNLIAIDEAHCISTWGHDFRPSYRKLSSLRSQLP---------NIP 193
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376
++ALTATA +V++D++ SL + + + +SF RPN+ + V++
Sbjct: 194 ILALTATAVPKVQKDVIISLGL-ENPLVLKSSFNRPNIYYEVRY 236
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 104/185 (56%), Gaps = 21/185 (11%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR-VHTEFHENKLEVVVATI 570
D IIY R ++ YL +G+ AAY+A L K++LR+ V ++ ++++VVVAT+
Sbjct: 256 DVCAIIYCLERAMCDQLSVYLAKYGISCAAYHAGL-KNELRKSVLEDWISSRIQVVVATV 314
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS---MPTLLPS 627
AFGMGID+ +VR + H+ P+S+EA+YQE+GRAGRD + +LY + M +L +
Sbjct: 315 AFGMGIDRKDVRVVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGIEDRRRMEFILRN 374
Query: 628 RRSED---------QTKQAYRMLSDCFRYGMNTSC----CRAKILVEYFGEDFSHEKC-Q 673
R S D Q KQ + L+D + M C CR K ++E FGE C +
Sbjct: 375 RSSADKKILPSSSSQEKQPEKSLTDFTQ--MVEYCEGSRCRRKQILESFGEQVPASICSR 432
Query: 674 LCDVC 678
CD C
Sbjct: 433 SCDAC 437
>gi|308801525|ref|XP_003078076.1| DNA helicase isolog (ISS) [Ostreococcus tauri]
gi|116056527|emb|CAL52816.1| DNA helicase isolog (ISS) [Ostreococcus tauri]
Length = 1174
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 138/249 (55%), Gaps = 21/249 (8%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W + L+ F S ++ Q A++A +A DCLVL TG GKSLC+Q+PA++ V
Sbjct: 335 WSKLIQQTLRNTFNAKSFRSLQLLAVNATMAARDCLVLMPTGGGKSLCYQLPAVVKPGVT 394
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSG-QPDNKV--EQKALRGMYSIIYVCPETVIR 273
VVISPLISL+ DQ LS+ G+ A L + + DN + + ++ ++YV PE V+R
Sbjct: 395 VVISPLISLIQDQLHHLSEMGIPATVLSAAKESDNSIYDDLRSSTPELRLLYVTPEKVVR 454
Query: 274 ---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
L LQRL E + F +DE HC+S WGHDFR DY L LK L
Sbjct: 455 SGKLKTALQRLYERNMLNRFVLDEAHCISAWGHDFRKDYTEL---------RGLKHLFPT 505
Query: 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFC 390
P+M LTATAT +V++DI++ L++ K +F +F R NL + V H K K+
Sbjct: 506 TPIMCLTATATRRVQDDIVRQLNLPKCLRF-FDTFNRTNLTYEV-HPKLKG----KQMIS 559
Query: 391 QLIDIYTKK 399
++ D+ K+
Sbjct: 560 EIKDVIVKR 568
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 9/152 (5%)
Query: 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAY 596
+KA Y+A LP++ ++ + +++ ++ AT+AFGMGI+K NVR + H+ P+SLEAY
Sbjct: 613 LKAVPYHAGLPEATRKKHQEMWQRDEVNIICATVAFGMGINKPNVRFVFHHSMPKSLEAY 672
Query: 597 YQEAGRAGRDGHLADCVLYANLS----SMPTLLPSRRSEDQTKQAYR----MLSDCFRYG 648
+QE+GRAGRDG C+L+ + + L+ S R E + L+ Y
Sbjct: 673 HQESGRAGRDGEHGLCILFYSWGDASKARSMLMDSARKERAQPAVLQNNLDSLNTMVSYC 732
Query: 649 MNTSCCRAKILVEYFGEDFSHEKCQ-LCDVCV 679
N + CR L+ +F E F +C+ +CD C
Sbjct: 733 ENMADCRRTQLMAHFDERFERSRCRGMCDSCA 764
>gi|404401899|ref|ZP_10993483.1| ATP-dependent DNA helicase RecQ [Pseudomonas fuscovaginae UPB0736]
Length = 709
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 128/220 (58%), Gaps = 19/220 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRDGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVI--RL 274
SPLI+LM DQ + L + GV A L S + ++ + RG ++Y+ PE ++ R+
Sbjct: 64 SPLIALMDDQVATLEELGVAAAALNSTLSAEQQRELAARIRRGEVKMLYLAPERLVQPRM 123
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ LQ L IALFAIDE HCVS+WGHDFRP+Y +L L E F +P +
Sbjct: 124 LAFLQNL----DIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFP---------HVPRI 170
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA + RE+I+ LH+ +F L+SF RPN+ + +
Sbjct: 171 ALTATADKRTREEIVNRLHLQNAERF-LSSFDRPNIFYRI 209
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 88/169 (52%), Gaps = 4/169 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK+ +A LC G A Y+A LP F + ++VATIAFGMG
Sbjct: 232 IVYCLSRKKVDEVAALLCEQGFPALPYHAGLPSETRADNQRRFLNEEGLIMVATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSED 632
IDK NVR + H P+SLEAYYQE GRAGRDG AD + L + L L + ++
Sbjct: 292 IDKSNVRFVAHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDE 351
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
+ K+ D + CR + L+ YF ED + C CD CVDG
Sbjct: 352 RHKRLEHHKLDAMLALCEETRCRRQTLLAYFDEDMP-QPCGHCDNCVDG 399
>gi|321475158|gb|EFX86121.1| RecQ1-like protein [Daphnia pulex]
Length = 624
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 126/227 (55%), Gaps = 18/227 (7%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W K+ LK F + Q A++A L HD +++ TG GKSLC+Q+PAL++ +
Sbjct: 65 WTKKLYQTLKDAFHIEKFRPMQLSAMNATLKGHDVILIMPTGGGKSLCYQLPALVSDGIT 124
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL-----RGMYSIIYVCPETV 271
+VI+PL+SLM DQ + L K G+ A L + +V L + ++YV PE +
Sbjct: 125 LVITPLVSLMEDQLASLEKLGIEAAKLNASSSKEEVNMVHLAMTDAKSSLKLLYVTPEKL 184
Query: 272 I---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
R + LQ++ + + A A+DEVHC S+WGHDFRPDY+ L VLR F
Sbjct: 185 AKSKRFMTKLQKMYQIKRFACVAVDEVHCCSQWGHDFRPDYKYLGVLRSLFPT------- 237
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+P++ LTATAT+ V D+ K L+M F SF RPNL + V+
Sbjct: 238 --VPIVGLTATATLNVTNDVQKMLNMKNSLVFK-ASFNRPNLYYEVR 281
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 103/192 (53%), Gaps = 5/192 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY + K+ +A L + A+Y+ASL + VHT + EN+ + VVATIAFGMG
Sbjct: 308 IIYTTSVKDCDQLASELRQQKCRVASYHASLEPADRTEVHTGWRENRYQAVVATIAFGMG 367
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR +IH+ +S+E +YQE+GRAGRD A C++Y LS + L +E +
Sbjct: 368 IDKPDVRFVIHHSISKSMENFYQESGRAGRDDLQACCIVYWRLSDLFRLSTMVFTE---Q 424
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-QLCDVCV-DGPPEMKNLKEEAN 693
R L Y ++ CR +I+ +F E + C ++CD C D N+ E
Sbjct: 425 TGLRNLYAMAAYCLDPERCRREIIASHFDERWESSSCNKMCDHCSKDSTSAEINIVEHLT 484
Query: 694 ILMQVIAAYNEQ 705
L Q++ EQ
Sbjct: 485 TLRQILERAEEQ 496
>gi|312962307|ref|ZP_07776798.1| ATP-dependent DNA helicase [Pseudomonas fluorescens WH6]
gi|311283234|gb|EFQ61824.1| ATP-dependent DNA helicase [Pseudomonas fluorescens WH6]
Length = 708
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIKRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + +S IALFAIDE HCVS+WGHDFR +Y +L L E F D+P +A
Sbjct: 121 PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I++ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVERLHLQNAERF-LSSFDRPNIFYRI 209
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 110/204 (53%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +LC G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLSERRSDA-GIVYCLSRKKVDEVAAFLCEQGYPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP ++ R H + F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NETRSAHQKRFLNEEGLIMVATIAFGMGIDKSNVRFVAHMDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 317 GRAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED + C CD C+DG
Sbjct: 377 TLLAYFDEDMP-QPCGHCDNCIDG 399
>gi|110833596|ref|YP_692455.1| ATP-dependent DNA helicase RecQ [Alcanivorax borkumensis SK2]
gi|110646707|emb|CAL16183.1| ATP-dependent DNA helicase RecQ [Alcanivorax borkumensis SK2]
Length = 713
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 129/219 (58%), Gaps = 17/219 (7%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+S+L+ FG+ + Q+ + + D LVL TG GKSLC+QIPAL+ VVIS
Sbjct: 5 AHSVLEHVFGYHQFRGEQQTVIDTLIQGDDALVLMPTGGGKSLCYQIPALVRTGTGVVIS 64
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKP 277
PLI+LM DQ L GV A FL S ++ +E L+G ++Y+ PE RLI+P
Sbjct: 65 PLIALMQDQVDALKALGVRAAFLNSTLAHDQARALESALLQGELDMLYIAPE---RLIQP 121
Query: 278 LQ-RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L + IALFAIDE HCVS+WGHDFR DY +LS+L F D+P +AL
Sbjct: 122 RTLALLKQAEIALFAIDEAHCVSQWGHDFRNDYLQLSLLHREFP---------DVPRIAL 172
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
TATA + R +I + L +++ FV +SF RPN+++ ++
Sbjct: 173 TATADQRTRTEIAERLDLTQARHFV-SSFDRPNIQYRIE 210
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 105/214 (49%), Gaps = 21/214 (9%)
Query: 490 FERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKS 549
ER D RL + E G I+Y +R + +A++LC G+ A Y+A L
Sbjct: 209 IERKDGARNQLLRLLRAEHAGEAG--IVYCLSRNKVDRVAEWLCQQGINALPYHAGLSGP 266
Query: 550 QLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609
+ F V+VATIAFGMGIDK +VR + H P+S+E+YYQE GRAGRDG+
Sbjct: 267 MREKHQQRFLREDGIVMVATIAFGMGIDKPDVRFVAHLDLPKSIESYYQETGRAGRDGNP 326
Query: 610 ADCVLYANLS---SMPTLLPS-------RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
A + L + +L +R+E+Q ++ ML C + CR + L
Sbjct: 327 ATAWMAYGLEDAIKLKQMLAQGSGNEQHKRNENQRLES--MLGLC-----EITHCRRQAL 379
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEAN 693
+ YFGE + C CD C+ PPE + E A
Sbjct: 380 LHYFGETLE-KPCGNCDTCLH-PPETFDATEAAQ 411
>gi|390954980|ref|YP_006418738.1| RecQ familyATP-dependent DNA helicase [Aequorivita sublithincola
DSM 14238]
gi|390420966|gb|AFL81723.1| ATP-dependent DNA helicase, RecQ family [Aequorivita sublithincola
DSM 14238]
Length = 730
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 134/227 (59%), Gaps = 23/227 (10%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
E + + LKK+FG + K Q+E + + L ++ V+ TG GKSLC+Q+PAL+ +
Sbjct: 3 ETDIYAALKKYFGFTRFKGLQEEVIKSILQGNNTFVVMPTGGGKSLCYQLPALMQEGTAI 62
Query: 218 VISPLISLMHDQCSKL----SKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCP 268
V+SPLI+LM +Q L S+ G+ A L S NK E K ++ G+ ++YV P
Sbjct: 63 VVSPLIALMKNQVDALRALSSEEGI-AHVLNSSL--NKTEVKNVKADIASGITKLLYVAP 119
Query: 269 ETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
E++ + + +++ I+ AIDE HC+S+WGHDFRP+YR L + + G N
Sbjct: 120 ESLTK--EEYVNFLQTQKISFMAIDEAHCISEWGHDFRPEYRNLKSIIQRIGDN------ 171
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
IP++ LTATAT +V+EDILK+L+M F SF RPNL + ++
Sbjct: 172 --IPIIGLTATATPKVQEDILKNLNMQDANTFK-ASFNRPNLYYEIR 215
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 129/261 (49%), Gaps = 22/261 (8%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK +A+ L G+KA Y+A L + F ++VVVATIAFGMG
Sbjct: 238 IIYCLSRKRVEELAQALQVNGIKAVPYHAGLDGKTRVKHQDMFLMEDVDVVVATIAFGMG 297
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSED 632
IDK +VR +IH P+S+E+YYQE GR GRDG C+ Y ++ + + + +
Sbjct: 298 IDKPDVRFVIHNDIPKSIESYYQETGRGGRDGGEGHCLAFYSYKDIEKLEKFMSGKPVAE 357
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ--LCDVCVDGPPEMKNLKE 690
Q + + +L + + TS R K ++ YFGE+F +E + D + P + K+
Sbjct: 358 Q-EIGHALLQEVVGFA-ETSMSRRKFILHYFGEEFDNETGDGGMMDDNMRYPKKKHEAKD 415
Query: 691 EANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLAT--- 747
A +L++V++ NEQ S + + + + + R +Q+Y T
Sbjct: 416 NAKLLLEVVSKTNEQYKSKEVVNVLVGKVNA-----------LIKSHRTDAQQYFGTGAN 464
Query: 748 -DLLWWRGLARIMENKGYIRE 767
D +W L R + G++++
Sbjct: 465 QDSAYWMALLRQLLVAGFLKK 485
>gi|296330478|ref|ZP_06872957.1| putative ATP-dependent nucleic acid helicase [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305674736|ref|YP_003866408.1| ATP-dependent nucleic acid helicase [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296152375|gb|EFG93245.1| putative ATP-dependent nucleic acid helicase [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305412980|gb|ADM38099.1| putative ATP-dependent nucleic acid helicase [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 591
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 135/238 (56%), Gaps = 21/238 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEAL-SAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
+ SLL +FG+ L++ Q+EA+ S A + + TG GKS+C+QIPAL+ +V
Sbjct: 4 RAQSLLAHYFGYEKLRSGQEEAIRSVTEARQNTACIMPTGGGKSICYQIPALMFEGATIV 63
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK--ALR-GMYSIIYVCPE--TVIR 273
ISPLISLM DQ L + G+ A ++ S Q + ++ ++ L+ G Y + Y+ PE T
Sbjct: 64 ISPLISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTE 123
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
I+ LQ S + L AIDE HC+S+WGHDFRP YR + +L + L +
Sbjct: 124 FIRILQ----SIDVPLVAIDEAHCISQWGHDFRPSYRNIEIL--------FRELHDKPVI 171
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQ 391
MALTATAT +V EDI K LH+ K V T F R NL F V +K ++ + D+ Q
Sbjct: 172 MALTATATPEVHEDICKQLHIQKENT-VHTGFSRDNLTFKV--AKGENKDRFIDDYVQ 226
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 6/193 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y TRKE I + L + A Y+ L + F ++L+V+VAT AFGMG
Sbjct: 234 IVYTATRKEADRIYERLKRNQISAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMG 293
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
IDK N+R ++H P+ +E+YYQEAGRAGRDG ++CVL ++ L+ E+
Sbjct: 294 IDKSNIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLFSPQDIMVQRFLIEQSEHEE 353
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ KQ + L Y +T C + ++ YFGE H C C C D ++ EA
Sbjct: 354 KQKQDLKKLRQMVDY-CHTEDCLQRFILMYFGEKEPH-ACGQCGNCTDTRTS-HDVTREA 410
Query: 693 NILMQVIAAYNEQ 705
+++ I E+
Sbjct: 411 QMVLSCIIRMKER 423
>gi|262392866|ref|YP_003284720.1| ATP-dependent DNA helicase RecQ [Vibrio sp. Ex25]
gi|451976070|ref|ZP_21927241.1| ATP-dependent DNA helicase RecQ [Vibrio alginolyticus E0666]
gi|262336460|gb|ACY50255.1| ATP-dependent DNA helicase RecQ [Vibrio sp. Ex25]
gi|451929977|gb|EMD77700.1| ATP-dependent DNA helicase RecQ [Vibrio alginolyticus E0666]
Length = 611
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 145/261 (55%), Gaps = 20/261 (7%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
SD V +L++ FG+ + ++ Q+E + A + D LV+ TG GKSLC+QIPAL+
Sbjct: 10 SDTPVTPQRVLEEVFGYQTFRDGQQEVIEAAIEGKDSLVIMPTGGGKSLCYQIPALVRSG 69
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETV 271
+ +VISPLISLM DQ +L +GV A + S + V + G ++YV PE V
Sbjct: 70 ITLVISPLISLMKDQVDQLKANGVAAECVNSTMNREELLSVYNRMHSGQLKLVYVSPERV 129
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
L++ E+ +++ A+DE HC+S+WGHDFRP+Y L L+++F +
Sbjct: 130 --LMRDFIERLENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQHFS---------HV 178
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---K 386
P MALTATA R DIL+ L + + + L SF RPN+R+++ KH S Y +
Sbjct: 179 PFMALTATADDATRRDILERLRLHEPQVY-LGSFDRPNIRYTLVEKHKPVSQIIRYLATQ 237
Query: 387 KDFCQLIDIYTKKKKTGEKEK 407
K C +I ++KK EK
Sbjct: 238 KGSCGIIYCGSRKKVEMVTEK 258
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 134/254 (52%), Gaps = 15/254 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ + + LC ++AA Y+A + + V F + +++VVAT+AFGMG
Sbjct: 243 IIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDTEERAYVQEAFQRDDIQIVVATVAFGMG 302
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ ++ A++S + +L +
Sbjct: 303 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGP 362
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
Q + L+ + CR ++L+ YFGE + + C CD+C+D PP+ + EEA
Sbjct: 363 QKQVESHKLNAMSAFA-EAQTCRRQVLLNYFGE-YREKPCGNCDICLD-PPKHFDATEEA 419
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLW 751
+ + N QS M + G++ + + + K+ I R+ S Y
Sbjct: 420 RKALSCVYRVN-QSFGMTYVVEVLRGMQNIRVREHGHDKISTYGIGRDHSHDY------- 471
Query: 752 WRGLARIMENKGYI 765
W + R + +KG +
Sbjct: 472 WVSIFRQLIHKGLL 485
>gi|402846704|ref|ZP_10895013.1| putative ATP-dependent DNA helicase RecQ [Porphyromonas sp. oral
taxon 279 str. F0450]
gi|402267396|gb|EJU16791.1| putative ATP-dependent DNA helicase RecQ [Porphyromonas sp. oral
taxon 279 str. F0450]
Length = 539
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/247 (39%), Positives = 139/247 (56%), Gaps = 28/247 (11%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LKKHFG K Q+E + + LA D VL TG GKSLC+Q+PALL V+ISPLI+
Sbjct: 10 LKKHFGFDQFKGNQQEIIESILAGQDTFVLMPTGGGKSLCYQLPALLMPGTAVIISPLIA 69
Query: 225 LMHDQCSKLS---KHGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIRL--IK 276
LM +Q + + A FL S ++E + +G ++YV PE++ + IK
Sbjct: 70 LMKNQVDAVRGFCEEDTVAHFLNSSLSRTRLEEVKEDVRQGRTKLLYVAPESLHKKENIK 129
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
LQ + I+ +A+DE HC+S+WGHDFRP+YRR+ + D P+MAL
Sbjct: 130 LLQEIP----ISFYAVDEAHCISEWGHDFRPEYRRIRAIVTEIA---------DRPIMAL 176
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIY 396
TATAT +V+ DI+K+L M F +SF RPNL + + H KT A ++D + I
Sbjct: 177 TATATPKVQHDIMKNLGMESAAVFQ-SSFNRPNLLYRI-HPKT---AESERDIVRY--IL 229
Query: 397 TKKKKTG 403
+ KK+G
Sbjct: 230 SNPKKSG 236
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 120/232 (51%), Gaps = 17/232 (7%)
Query: 489 SFERTDLLNKPAERLS---------MLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539
SF R +LL + + + +L P + G I+Y R + +++ + L G+KA
Sbjct: 203 SFNRPNLLYRIHPKTAESERDIVRYILSNPKKSG--IVYCMRRTQVMNLTEVLQANGIKA 260
Query: 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599
Y+A L + F E + EV+VATIAFGMGIDK +VR +IH+ P+SLE YYQE
Sbjct: 261 LPYHAGLDAKERAENQDAFIEERAEVIVATIAFGMGIDKPDVRYVIHFDMPKSLEGYYQE 320
Query: 600 AGRAGRDGHLADCVLYA---NLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRA 656
GRAGRDG C+ Y +L + + DQ + A +L + Y TS CR
Sbjct: 321 TGRAGRDGGEGVCIAYYDHDDLEKLERFTKGKSVADQ-EIARALLRETADYA-ETSICRR 378
Query: 657 KILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNS 708
L+ YFGE + E C CD C+ P KE L++V+++ E+ N+
Sbjct: 379 SFLLNYFGERYEAENCGSCDNCL-VPKTKVEAKELLVNLLEVVSSLKEKFNA 429
>gi|348506232|ref|XP_003440664.1| PREDICTED: Bloom syndrome protein homolog [Oreochromis niloticus]
Length = 1403
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 130/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + Q EA++A L D VL TG GKSLC+Q+PA ++ V VV+SPL
Sbjct: 649 IFHKRFGLHQFRFNQLEAINAALLGEDAFVLMPTGGGKSLCYQLPACVSLGVTVVVSPLK 708
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A L + D++ + ++ + ++YV PE + RLI
Sbjct: 709 SLIVDQVQKLTTLDIPATSLSGDKSDSEASRIYMQLSRKDPIIKLLYVTPEKLSASNRLI 768
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
LQ L E +A F IDE HCVS+WGHDFRPDY++L LR+ F ++ +MA
Sbjct: 769 SALQNLYERGLLARFIIDEAHCVSQWGHDFRPDYKKLHELRQKFP---------NVAMMA 819
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATAT +V++DIL L+MS+ F + SF R NL+++V
Sbjct: 820 LTATATPRVQKDILNQLNMSRPQVFTM-SFNRTNLKYAV 857
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 110/197 (55%), Gaps = 13/197 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVVATIAFGM 574
I+Y +R + ++A+ L G+ A +Y+A L S V +++ +++ +V+ ATIAFGM
Sbjct: 883 IVYCLSRNDCDAMAESLQRAGLSALSYHAGLSDSDREYVQSKWINQDGCQVICATIAFGM 942
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSE 631
GIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L Y ++ + ++ R
Sbjct: 943 GIDKPDVRYVIHASLPKSMEGYYQESGRAGRDGEISHCILFYSYTDVQRIKRIISMDREG 1002
Query: 632 DQTKQA--YRMLSDCFRYGMNTSCCRAKILVEYFGE-DFSHEKCQ-----LCDVCVD-GP 682
D+ +A Y L + N CR L+ YFGE F+ C+ CD C
Sbjct: 1003 DRHTKATHYNNLHSMVHFCENVMECRRIQLLAYFGELKFNRNFCKDHPDVSCDNCTKPNQ 1062
Query: 683 PEMKNLKEEANILMQVI 699
+M+N+ E+ +++ +
Sbjct: 1063 YKMRNVTEDVKKIVRFV 1079
>gi|400752982|ref|YP_006561350.1| ATP-dependent DNA helicase RecQ [Phaeobacter gallaeciensis 2.10]
gi|398652135|gb|AFO86105.1| ATP-dependent DNA helicase RecQ [Phaeobacter gallaeciensis 2.10]
Length = 699
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 124/224 (55%), Gaps = 21/224 (9%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
LL++ FG + Q+E + A A + L + TG GKSLCFQ+PALL V VVIS
Sbjct: 24 ATPLLREIFGFDGFRPGQEEIVDAVTAGENVLAIMPTGGGKSLCFQLPALLREGVTVVIS 83
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIR--LI 275
PLI+LM DQ L + GVTA L SG D + E Q G ++Y+ PE + +
Sbjct: 84 PLIALMRDQVRALQEVGVTAGALTSGNTDEETEAVWQSIEEGRLKLLYMAPERLASGAAM 143
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+R+ G++L A+DE HCVS+WGHDFRPDY R+ LR D+PL A
Sbjct: 144 GMLRRI----GVSLIAVDEAHCVSQWGHDFRPDYLRIGELRR----------ALDVPLAA 189
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPN--LRFSVKHS 377
TATA + RE+I++ L + + L F RPN L F+ K S
Sbjct: 190 FTATADQETREEIVEKLFDGEAPRSFLRGFDRPNIHLAFATKDS 233
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y TR +T ++A L G A Y+ + R V T F +VVAT+AFGMG
Sbjct: 251 IVYCGTRAKTEALAAGLREAGHAACYYHGGMDAEDRRGVETRFAREDGLIVVATVAFGMG 310
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM--------PTLLPS 627
IDK ++R + H P+S+E+YYQE GR GRDG A+ + + L P+
Sbjct: 311 IDKPDIRWVAHADLPKSIESYYQEIGRGGRDGAPAETLTLFGPEDIRLRRSQIDEGLAPA 370
Query: 628 -RRSEDQTK-QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEM 685
RRS D + A L++ + CR + L+ YFGE + E C CD+C D P ++
Sbjct: 371 DRRSADHARLNALLGLAEALK-------CRRQTLLAYFGE--TAEPCGNCDLC-DQPVDV 420
Query: 686 KNLKEEANILMQVIAAYNEQSNS 708
+ + I NE S
Sbjct: 421 FDGTTAVRKALSAILRTNETYGS 443
>gi|365091573|ref|ZP_09328928.1| ATP-dependent DNA helicase RecQ [Acidovorax sp. NO-1]
gi|363415884|gb|EHL23008.1| ATP-dependent DNA helicase RecQ [Acidovorax sp. NO-1]
Length = 623
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 131/226 (57%), Gaps = 19/226 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVV 217
+++L+ FG+ + Q+ + + D LVL TG GKSLC+Q+PA++ + V +
Sbjct: 5 HTVLQDVFGYEQFRGPQQAIVEHVIGGGDALVLMPTGGGKSLCYQVPAIVRQQQGRGVTI 64
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR---GMYSIIYVCPE--TVI 272
V+SPLI+LMHDQ L + GV+A FL S ++ + LR G +++Y PE
Sbjct: 65 VVSPLIALMHDQVGALHEAGVSAAFLNSTLSFDEAQDVELRLQTGDITLLYAAPERLNTP 124
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
R + L L + ++LFAIDE HCVS+WGHDFRP+YR L+VL E + +P
Sbjct: 125 RFLGLLDSLYQGGHLSLFAIDEAHCVSQWGHDFRPEYRALTVLHERYAG---------VP 175
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
+ALTATA R DI++ L + F+ +SF RPN+R+ ++ K
Sbjct: 176 RIALTATADDLTRADIIERLQLEDARLFI-SSFDRPNIRYRIEEKK 220
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 101/198 (51%), Gaps = 12/198 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
++Y +RK +A LC G+ A Y+A L ++ F + V+VATIAFGMG
Sbjct: 240 VVYCQSRKRVEELAATLCDAGITALPYHAGLDTKVRQKNQDRFLREEGIVMVATIAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT- 634
IDK +VR + H P+++E YYQE GRAGRDG AD + L+ ++ RR D++
Sbjct: 300 IDKPDVRFVAHVDMPKNIEGYYQETGRAGRDGLNADAWMAYGLND---VVNQRRMIDESP 356
Query: 635 -----KQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLK 689
KQA R D + CR L+ YFGE + C CD C++ PP + +
Sbjct: 357 AGEEFKQALRGKLDALLALAEATDCRRVRLLAYFGEQST--PCGNCDNCLN-PPAVWDAT 413
Query: 690 EEANILMQVIAAYNEQSN 707
+ A L+ I N+ S
Sbjct: 414 DAARKLLSTIYRVNQASG 431
>gi|421503610|ref|ZP_15950556.1| ATP-dependent DNA helicase RecQ [Pseudomonas mendocina DLHK]
gi|400345437|gb|EJO93801.1| ATP-dependent DNA helicase RecQ [Pseudomonas mendocina DLHK]
Length = 710
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 128/216 (59%), Gaps = 17/216 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK FG+ + + Q + A D LVL TG GKSLC+Q+PAL+ + VV+SPLI
Sbjct: 8 ILKDVFGYDAFRGNQAAIIERVAAGGDALVLMPTGGGKSLCYQVPALMREGLAVVVSPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKP-LQ 279
+LM DQ + L + GV A L S ++ ++ RG ++Y+ PE RL++P +
Sbjct: 68 ALMDDQVATLEELGVAAVALNSTLSADEQREIAERIRRGQIKMLYLAPE---RLVQPRML 124
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ IALFAIDE HCVS+WGHDFRP+Y +L L E F +P +ALTAT
Sbjct: 125 SFLQGLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFP---------QVPRLALTAT 175
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A + RE+I++ LH+ +F L+SF RPN+ + ++
Sbjct: 176 ADKRTREEIVQRLHLDNAERF-LSSFDRPNIFYRIQ 210
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 95/170 (55%), Gaps = 6/170 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
I+Y +RK+ +A +L G A Y+A LP ++LR H + F + ++VATIAFGM
Sbjct: 232 IVYCLSRKKVEEVADFLSSQGFPALPYHAGLP-NELRAYHQKRFLNEEGLIMVATIAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS---MPTLLPSRRSE 631
GIDK NVR + H P+SLEAYYQE GRAGRDG AD + L + +L + +
Sbjct: 291 GIDKPNVRFVCHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVIFLKQMLANSEGD 350
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
++ K+ + D + CR + L+ YF E+ + C CD C+DG
Sbjct: 351 ERHKRIEQHKLDAMLALCEETRCRRQALLAYFDEELP-QPCGHCDNCIDG 399
>gi|146306843|ref|YP_001187308.1| ATP-dependent DNA helicase RecQ [Pseudomonas mendocina ymp]
gi|145575044|gb|ABP84576.1| ATP-dependent DNA helicase RecQ [Pseudomonas mendocina ymp]
Length = 710
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 128/216 (59%), Gaps = 17/216 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK FG+ + + Q + A D LVL TG GKSLC+Q+PAL+ + VV+SPLI
Sbjct: 8 ILKDVFGYDAFRGNQAAIIERVAAGGDALVLMPTGGGKSLCYQVPALMREGLAVVVSPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKP-LQ 279
+LM DQ + L + GV A L S ++ ++ RG ++Y+ PE RL++P +
Sbjct: 68 ALMDDQVATLEELGVAAVALNSTLSADEQREIAERIRRGQIKMLYLAPE---RLVQPRML 124
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ IALFAIDE HCVS+WGHDFRP+Y +L L E F +P +ALTAT
Sbjct: 125 SFLQGLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFP---------QVPRLALTAT 175
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A + RE+I++ LH+ +F L+SF RPN+ + ++
Sbjct: 176 ADKRTREEIVQRLHLDNAERF-LSSFDRPNIFYRIQ 210
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 95/170 (55%), Gaps = 6/170 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
I+Y +RK+ +A +L G A Y+A LP ++LR H + F + ++VATIAFGM
Sbjct: 232 IVYCLSRKKVEEVADFLSSQGFPALPYHAGLP-NELRAYHQKRFLNEEGLIMVATIAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS---MPTLLPSRRSE 631
GIDK NVR + H P+SLEAYYQE GRAGRDG AD + L + +L + +
Sbjct: 291 GIDKPNVRFVCHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVIFLKQMLANSEGD 350
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681
++ K+ + D + CR + L+ YF E+ + C CD C+DG
Sbjct: 351 ERHKRIEQHKLDAMLALCEETRCRRQALLAYFDEELP-QPCGHCDNCIDG 399
>gi|432093931|gb|ELK25783.1| Bloom syndrome protein [Myotis davidii]
Length = 1296
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 130/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 539 IFHKKFGLHHFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 598
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 599 SLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLI 658
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 659 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 709
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 710 LTATANPRVQKDILTQLKILRPQVFTM-SFNRHNLKYYV 747
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 99/175 (56%), Gaps = 12/175 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVVATIAFGM 574
IIY +R+E ++A L G+ A AY+A L S V H +++ +V+ ATIAFGM
Sbjct: 773 IIYCLSRRECDTMADTLQKNGLPALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGM 832
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTL-LPSRRS 630
GIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L Y +++ + L L +
Sbjct: 833 GIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYYDVTRLKRLILMEKDG 892
Query: 631 EDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGE-----DFSHEKCQL-CDVC 678
T++ + L Y N + CR L+ YFGE DF + ++ CD C
Sbjct: 893 NHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGEIGFNPDFCKKHPEVSCDNC 947
>gi|365882677|ref|ZP_09421875.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. ORS 375]
gi|365288955|emb|CCD94406.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. ORS 375]
Length = 624
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 139/240 (57%), Gaps = 19/240 (7%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
+D + ++L FG + Q++ + +CLVL TG GKSLC+Q+PALL
Sbjct: 9 TDTADRALAVLHSVFGLPGFRGAQEKVVRHVAEGGNCLVLMPTGGGKSLCYQLPALLRKG 68
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETV 271
+V+SPLI+LM DQ + L + GV A L S + ++VE++ + G ++YV PE
Sbjct: 69 CGIVVSPLIALMRDQVAGLIEAGVNAAVLNSTLSREEADEVERRLIVGDLDLLYVAPE-- 126
Query: 272 IRLIKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
RL+ P L E IALFAIDE HCVS+WGHDFRP+Y LSV+ E F D
Sbjct: 127 -RLVTPRCLSLLERAEIALFAIDEAHCVSQWGHDFRPEYIGLSVIAERFP---------D 176
Query: 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASYKKD 388
+P +ALTATA R++I + L ++ +FV SF RPN+R+ + KH+ + ++ K+
Sbjct: 177 VPRIALTATADELTRKEIAERLSLTDAPQFV-ASFDRPNIRYEIVDKHNGPAQLKAFIKE 235
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 114/220 (51%), Gaps = 11/220 (5%)
Query: 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
DR R +E D N PA+ + ++E ++Y +R + A L G+ A Y
Sbjct: 211 DRPNIR-YEIVDKHNGPAQLKAFIKERHPGDAGVVYCLSRAKVEDTAAALNEAGITAIPY 269
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L + R F VVVAT+AFGMGIDK +VR + H P+S+EAYYQE GR
Sbjct: 270 HAGLDPAVRSRNQDRFINEDGVVVVATVAFGMGIDKPDVRFVAHLDLPKSIEAYYQETGR 329
Query: 603 AGRDGHLADCVLYANLSSMPTLLPSRRSEDQT--KQAYRMLS----DCFRYGMNTSCCRA 656
AGRDG + + LS ++ RR D++ +A++ +S D T+ CR
Sbjct: 330 AGRDGKPSTAWMAYGLSD---IVQQRRMIDESTGAEAFKRMSIRKLDALVALAETASCRR 386
Query: 657 KILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILM 696
K+L+ YFGE E C CD CV PP+M++ K A L+
Sbjct: 387 KLLLSYFGETPVGENCGNCDNCVS-PPKMRDGKVIAQKLL 425
>gi|389685009|ref|ZP_10176333.1| ATP-dependent DNA helicase RecQ [Pseudomonas chlororaphis O6]
gi|388550662|gb|EIM13931.1| ATP-dependent DNA helicase RecQ [Pseudomonas chlororaphis O6]
Length = 708
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 127/220 (57%), Gaps = 19/220 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVI--RL 274
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE ++ R+
Sbjct: 64 SPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIRRGEVKMLYLAPERLVQPRM 123
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ LQ L IALFAIDE HCVS+WGHDFRP+Y +L L E F +P +
Sbjct: 124 LAFLQNL----DIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFP---------QVPRI 170
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA + RE+I+ LH+ +F L+SF RPN+ + +
Sbjct: 171 ALTATADKRTREEIVNRLHLQNAERF-LSSFDRPNIFYRI 209
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 111/204 (54%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +LC G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLSERRSDA-GIVYCLSRKKVDEVAAFLCEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP S+LR H + F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-SELRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSS---MPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD + L + +L + +++ K+ + D + CR +
Sbjct: 317 GRAGRDGLPADAWMAYGLQDVLMLKQMLQNSEGDERHKRLEQHKLDAMLALCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED + C CD CVDG
Sbjct: 377 TLLAYFDEDMP-QPCGHCDNCVDG 399
>gi|255579679|ref|XP_002530679.1| DNA helicase hus2, putative [Ricinus communis]
gi|223529772|gb|EEF31710.1| DNA helicase hus2, putative [Ricinus communis]
Length = 1233
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 136/236 (57%), Gaps = 20/236 (8%)
Query: 148 PKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQI 207
PK W K+ + KK FG+ S + Q+E ++A ++ D VL TG GKSL +Q+
Sbjct: 434 PKWSSTNFPWTTKLEAYNKKVFGNHSFRPNQREVINATMSGFDVFVLMPTGGGKSLTYQL 493
Query: 208 PALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGM------Y 261
PAL+ + +VISPL+SL+ DQ L + ++A +L S + +Q+ LR + Y
Sbjct: 494 PALVCPGITLVISPLVSLIQDQIMHLLQANISAAYL-SANMEWAEQQEILRELSSDYCKY 552
Query: 262 SIIYVCPETVIR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLREN 318
++YV PE V + L++ L+ L +A IDE HCVS+WGHDFRPDY+ L +L++
Sbjct: 553 KLLYVTPEKVAKSDVLLRNLESLNARGLLARIVIDEAHCVSQWGHDFRPDYKELGILKKK 612
Query: 319 FGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
F P++ALTATAT V+ED++++L + F SF RPNL +SV
Sbjct: 613 FEK---------TPVLALTATATASVKEDVVQALGLVDCIIF-RQSFNRPNLWYSV 658
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 30/230 (13%)
Query: 505 MLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLE 564
++E D IIY +R + +A+ L G KAA Y+ ++ +Q V ++ ++++
Sbjct: 672 FIKENHFDECGIIYCLSRMDCEKVAEKLQECGHKAAFYHGNMDAAQRAFVQKQWSKDEIN 731
Query: 565 VVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS---- 620
++ AT+AFGMGI+K +VR +IH+ P+S+E Y+QE GRAGRDG + CVLY + S
Sbjct: 732 IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLRSSCVLYYSYSDYIRV 791
Query: 621 --------------------MPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILV 660
+ R E T+ RM+S C N CR + +
Sbjct: 792 KHMIVQGQIEQSPWTPGYNRINNTNSDRILEKNTENLLRMVSYC----ENDVDCRRILQL 847
Query: 661 EYFGEDFSHEKC-QLCDVCVDGPPEM-KNLKEEANILMQVIAAYNEQSNS 708
+FGE F+ C + CD C + K++ E A L+Q++ +Q +S
Sbjct: 848 LHFGEKFNSGNCKKTCDNCSQIKALVEKDVTETAKQLVQLVKLTGQQFSS 897
>gi|399994316|ref|YP_006574556.1| ATP-dependent DNA helicase RecQ [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
gi|398658871|gb|AFO92837.1| ATP-dependent DNA helicase RecQ [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
Length = 699
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 124/224 (55%), Gaps = 21/224 (9%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
LL++ FG + Q+E + A A + L + TG GKSLCFQ+PALL V VVIS
Sbjct: 24 ATPLLREIFGFDGFRPGQEEIVDAVTAGENVLAIMPTGGGKSLCFQLPALLREGVTVVIS 83
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIR--LI 275
PLI+LM DQ L + GVTA L SG D + E Q G ++Y+ PE + +
Sbjct: 84 PLIALMRDQVRALQEVGVTAGALTSGNTDEETEALWQSIEEGRLKLLYMAPERLASGAAM 143
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+R+ G++L A+DE HCVS+WGHDFRPDY R+ LR D+PL A
Sbjct: 144 GMLRRI----GVSLIAVDEAHCVSQWGHDFRPDYLRIGELRR----------ALDVPLAA 189
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPN--LRFSVKHS 377
TATA + RE+I++ L + + L F RPN L F+ K S
Sbjct: 190 FTATADQETREEIVEKLFDGEAPRSFLRGFDRPNIHLAFATKDS 233
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 99/200 (49%), Gaps = 14/200 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y TR +T +++ L G A Y+ + R V T F +VVAT+AFGMG
Sbjct: 251 IVYCGTRAKTEALSAGLREAGHAACYYHGGMDAEDRRGVETRFAREDGLIVVATVAFGMG 310
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSE--DQ 633
IDK ++R + H P+S+EAYYQE GR GRDG A+ + P + RRS+ +
Sbjct: 311 IDKPDIRWVAHADLPKSIEAYYQEIGRGGRDGAPAETLTLFG----PEDIRLRRSQIDEG 366
Query: 634 TKQAYRMLSDCFR----YGMNTSC-CRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
A R +D R G+ + CR + L+ YFGE + E C CD+C D P ++ +
Sbjct: 367 LAPAERRGADHARLNALLGLAEALKCRRQTLLAYFGE--TAEPCGNCDLC-DQPVDVFDG 423
Query: 689 KEEANILMQVIAAYNEQSNS 708
+ I NE S
Sbjct: 424 TTAVRKALSAILRTNETYGS 443
>gi|398311054|ref|ZP_10514528.1| ATP-dependent DNA helicase RecQ [Bacillus mojavensis RO-H-1]
Length = 595
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 136/248 (54%), Gaps = 28/248 (11%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEAL-SAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
K SLL +FG+ L+ Q+EA+ S A + + + TG GKS+C+QIPAL+ +V
Sbjct: 4 KAQSLLAHYFGYEKLRRGQEEAIRSVTEARQNTVCIMPTGGGKSICYQIPALMFEGTTIV 63
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK--ALR-GMYSIIYVCPE--TVIR 273
ISPLISLM DQ L + G+ A ++ S Q + ++ ++ L+ G Y + Y+ PE T
Sbjct: 64 ISPLISLMKDQVDALEEAGIKAAYINSSQTNQEIYERLNGLKEGAYKLFYITPERLTSTE 123
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
I+ LQ S + L AIDE HC+S+WGHDFRP YR + +L F N K + +
Sbjct: 124 FIRILQ----SIDVPLVAIDEAHCISQWGHDFRPSYRNIEIL---FHELNDKPV-----I 171
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLI 393
MALTATAT +V +DI + LH+ K V T F R NL V + R I
Sbjct: 172 MALTATATPEVHDDICRQLHIQKENT-VYTGFSRDNLTLKVAKGENKDR---------FI 221
Query: 394 DIYTKKKK 401
D Y K+ K
Sbjct: 222 DEYVKRNK 229
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 101/193 (52%), Gaps = 6/193 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y TRKE I + L + A Y+ L + F ++L+V+VAT AFGMG
Sbjct: 234 IVYTATRKEADRIYERLKRNQISAGRYHGGLQDEVRKEQQERFLNDELQVMVATSAFGMG 293
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
IDK N+R ++H P+ +E+YYQEAGRAGRDG ++CVL ++ L+ +E+
Sbjct: 294 IDKSNIRFVLHAQIPKDMESYYQEAGRAGRDGLDSECVLLFSPQDIMVQRFLIEQSENEE 353
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ KQ + L Y +T C + ++ YFGE + C C C D ++ EA
Sbjct: 354 KQKQDLKKLRQMVDY-CHTEDCLQRFILMYFGEK-EPDACGQCGNCTDTRT-AHDVTREA 410
Query: 693 NILMQVIAAYNEQ 705
+++ I NE+
Sbjct: 411 QMVLSCIIRMNER 423
>gi|345798304|ref|XP_003434427.1| PREDICTED: Bloom syndrome protein [Canis lupus familiaris]
Length = 1420
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 660 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 719
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RL+
Sbjct: 720 SLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLL 779
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 780 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 830
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 831 LTATANPRVQKDILTQLKILQPQVFSM-SFNRHNLKYYV 868
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 96/175 (54%), Gaps = 12/175 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVVATIAFGM 574
IIY +R+E ++A L G+ A AY+A L S V H +++ +V+ ATIAFGM
Sbjct: 894 IIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGM 953
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL----LPSRRS 630
GIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L L +
Sbjct: 954 GIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEKDG 1013
Query: 631 EDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL-----CDVC 678
T++ + L Y N + CR L+ YFGE F+ + C+ CD C
Sbjct: 1014 NRHTRETHFNNLYSMVHYCENITECRRIQLLAYFGESGFNPDFCKKYPDVSCDNC 1068
>gi|192360216|ref|YP_001980649.1| ATP-dependent DNA helicase RecQ [Cellvibrio japonicus Ueda107]
gi|190686381|gb|ACE84059.1| ATP-dependent DNA helicase RecQ [Cellvibrio japonicus Ueda107]
Length = 608
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 128/217 (58%), Gaps = 17/217 (7%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
++L + FG+ + Q+ + A +A D LVL TG GKSLC+QIPAL+ V VV+SP
Sbjct: 12 QAVLHQVFGYHEFRGPQEAVIHALVAGEDALVLMPTGGGKSLCYQIPALVREGVAVVVSP 71
Query: 222 LISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ + L + GV A FL S Q + E RG ++Y+ PE RLI+P
Sbjct: 72 LIALMQDQVNALREVGVRAGFLNSTLSSQEWWQTESALQRGELDLLYIAPE---RLIQPR 128
Query: 279 Q-RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L IALFAIDE HCVS+WGHDFR DY +L +L F +P +ALT
Sbjct: 129 TLELLHGLTIALFAIDEAHCVSQWGHDFRADYLKLDLLPREFP---------RVPRIALT 179
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ATA ++ R++I++ L + +F+ + F RPN+++ +
Sbjct: 180 ATADLRTRDEIVERLQLHNARQFI-SGFDRPNIQYRI 215
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 108/220 (49%), Gaps = 27/220 (12%)
Query: 481 HRDRDTDRSFERTDLLNKPAER-------LSMLQEPLEDGLTIIYVPTRKETLSIAKYLC 533
H R F+R ++ + A++ + L+E I+Y +R + IA++LC
Sbjct: 197 HNARQFISGFDRPNIQYRIAQKNNPKIQLMRFLREEQAGNSGIVYCLSRNKVEQIAEWLC 256
Query: 534 GFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQS 592
G A Y+A L S +R+ H E F ++VATIAFGMGIDK +VR + H P+S
Sbjct: 257 SEGFNALPYHAGLSAS-IRQQHQEKFLREDNIIMVATIAFGMGIDKPDVRFVAHLDLPKS 315
Query: 593 LEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPS----------RRSEDQTKQAYRMLS 642
+EAYYQE GRAGRDG A +L L + L +R+E Q A ML
Sbjct: 316 IEAYYQETGRAGRDGETATTLLLYGLEDVIKLRQMMSQSEGSEEFKRNEQQRLNA--MLG 373
Query: 643 DCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
C + CR + L+ YFG D + C CD C+ P
Sbjct: 374 LC-----EITSCRRQSLLRYFG-DHLVQPCGNCDNCLIPP 407
>gi|419956215|ref|ZP_14472323.1| ATP-dependent DNA helicase RecQ [Pseudomonas stutzeri TS44]
gi|387966982|gb|EIK51299.1| ATP-dependent DNA helicase RecQ [Pseudomonas stutzeri TS44]
Length = 708
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 128/220 (58%), Gaps = 19/220 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ + + Q + A D LVL TG GKSLC+Q+PALL + VV+
Sbjct: 4 QAQRILKDVFGYDAFRGNQGAIIEQVAAGGDALVLMPTGGGKSLCYQVPALLRDGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVI--RL 274
SPLI+LM DQ + L + GV A L S + ++ R ++Y+ PE ++ R+
Sbjct: 64 SPLIALMDDQVATLDELGVAAVALNSTLSADEQRDIAERIRRNEIKLLYLAPERLVQPRM 123
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ LQRL IALFAIDE HCVS+WGHDFRP+Y +L L E F +P +
Sbjct: 124 LAFLQRLQ----IALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPG---------VPRI 170
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA ++ RE+I++ L + +F L+SF RPN+ + +
Sbjct: 171 ALTATADMRTREEIIQRLQLQNAERF-LSSFDRPNIFYRI 209
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L L E D I+Y +RK+ +A +L G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLGFLAERRGDA-GIVYCMSRKKVDDLAAFLTEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP ++LR H + F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NELRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSS---MPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD + L + +L + +++ K+ + D + CR +
Sbjct: 317 GRAGRDGLPADAWMAYGLQDVIFLKQMLNNSEGDERHKRIEQHKLDAMLALCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVD 680
+L+ YF ED + C CD CVD
Sbjct: 377 VLLAYFDEDLP-QPCGHCDNCVD 398
>gi|149188483|ref|ZP_01866776.1| ATP-dependent DNA helicase RecQ [Vibrio shilonii AK1]
gi|148837701|gb|EDL54645.1| ATP-dependent DNA helicase RecQ [Vibrio shilonii AK1]
Length = 710
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 134/214 (62%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
LLK FG+ ++ Q+ ++ ++ +D L L TG GKS+C+QIPA+L V +V+SPLI
Sbjct: 6 LLKSLFGYDEFRHQQESIINTLISGNDVLTLMPTGGGKSICYQIPAILRQGVGIVVSPLI 65
Query: 224 SLMHDQCSKLSKHGVTACFLGSG-QPDNK--VEQKALRGMYSIIYVCPETVIRLIKPLQR 280
+LM DQ L + GV A +L S P ++ VEQ+ + G I+YV PE + +++
Sbjct: 66 ALMQDQVDALHQIGVKAAYLNSTLTPYDQQVVEQQLISGDIDILYVAPERL--MLERTLG 123
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L E ++LFAIDE HCVS+WGHDFRP+Y++L VL++ F + +P +ALTATA
Sbjct: 124 LLEQCHLSLFAIDEAHCVSQWGHDFRPEYQKLDVLKQRFPS---------VPRIALTATA 174
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+ +++I++ L + FV SF RPN+++ V
Sbjct: 175 DSRTQQEIIEQLALENAEVFV-HSFDRPNIQYHV 207
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 112/228 (49%), Gaps = 10/228 (4%)
Query: 461 ENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVP 520
+ + ++ + E + HS R + + +DL N E S +Q + IIY
Sbjct: 179 QQEIIEQLALENAEVFVHSFDR---PNIQYHVSDLSNAKQELWSFIQAHHPEDAGIIYCL 235
Query: 521 TRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLN 580
+RK+ A++L G A Y+A + Q F ++VATIAFGMGIDK N
Sbjct: 236 SRKKVEETAQWLNELGKVALPYHAGMSADQRALNQQRFLREDGIIIVATIAFGMGIDKPN 295
Query: 581 VRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQ---- 636
VR + H P+S+EAYYQE GRAGRDG A+ + + M ++ D ++Q
Sbjct: 296 VRFVGHLSLPKSIEAYYQETGRAGRDGQPANAWMAFGMQDMVLQRQMVQNSDASEQFKFT 355
Query: 637 AYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ + L+ Y + + CR + L+ YFGE + C CD C+ PPE
Sbjct: 356 SIQKLNALLGY-CDLASCRRQALLAYFGESL-EQPCGNCDNCLT-PPE 400
>gi|428201759|ref|YP_007080348.1| ATP-dependent DNA helicase RecQ [Pleurocapsa sp. PCC 7327]
gi|427979191|gb|AFY76791.1| ATP-dependent DNA helicase RecQ [Pleurocapsa sp. PCC 7327]
Length = 708
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 139/248 (56%), Gaps = 22/248 (8%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ + LK FG+ + Q++ + L + D LV+ TG GKSLCFQ+PALL + VV+S
Sbjct: 7 LEAALKHFFGYEHFRPGQRKIVEEALQNRDLLVIMPTGGGKSLCFQLPALLKPGLTVVVS 66
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLI 275
PLI+LM D+ L +G+ A FL S +V E L G ++YV PE ++ R
Sbjct: 67 PLIALMQDRVDALQDNGIGATFLNSSLTFPEVRSRETAILDGKIKLLYVAPERLLSERFR 126
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L A I FAIDE HCVS+WGHDFRP+YR+L LR+ + +P+ A
Sbjct: 127 NFLDLAATKISITAFAIDEAHCVSEWGHDFRPEYRQLIQLRQRYP---------HVPMFA 177
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDI 395
LTATAT +V+EDI++ L + + L SF RPN+ + V+ + ++ + QL+ +
Sbjct: 178 LTATATKRVQEDIIQQLGL-RQPGIHLASFNRPNIYYEVQPKE-------RRSYNQLLKL 229
Query: 396 YTKKKKTG 403
++ +G
Sbjct: 230 IRTQQGSG 237
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 131/270 (48%), Gaps = 27/270 (10%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+ G I+Y +R+ IA L G+ Y+A + T F + ++V+VATI
Sbjct: 233 QQGSGIVYCLSRRNVDEIAFRLQKDGISTVPYHAGITDEARTLNQTRFIRDDVKVIVATI 292
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--LPSR 628
AFGMGIDK +VR +IHY P++LE+YYQE+GRAGRDG A+C L+ +L + + +
Sbjct: 293 AFGMGIDKPDVRFVIHYDLPRNLESYYQESGRAGRDGEPANCTLFLSLGDFKRIEYIIDQ 352
Query: 629 RSEDQTKQ-AYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKN 687
+S+ Q ++ A + L Y T CR I++ YFGE F C CD C + P +++
Sbjct: 353 KSDPQEQRIARQQLRQVINYAEGTE-CRRTIILRYFGERFPG-NCASCDNCRN-PKPIED 409
Query: 688 LKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLAT 747
EA + +A E+ M D + K+ KI E L+T
Sbjct: 410 WTIEAQKFLSCVARTQERFGMMHIIDVLRGSSKR--------------KIEEYGHHLLST 455
Query: 748 -------DLLWWRGLARIMENKGYIREGDD 770
+ W+ L R + ++G + E D
Sbjct: 456 YGIGKGKTVEEWKMLGRSLIHQGLVDETTD 485
>gi|374579466|ref|ZP_09652560.1| ATP-dependent DNA helicase RecQ [Desulfosporosinus youngiae DSM
17734]
gi|374415548|gb|EHQ87983.1| ATP-dependent DNA helicase RecQ [Desulfosporosinus youngiae DSM
17734]
Length = 730
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/235 (41%), Positives = 133/235 (56%), Gaps = 22/235 (9%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K +L+++FG++ ++ Q++ + + L D L + TG+GKSL +QIPALL+ +VI
Sbjct: 4 KALEVLQRYFGYTQFRDGQQKVILSLLQGSDTLAIMPTGAGKSLAYQIPALLSEGTTLVI 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ---KALRGMYSIIYVCPETVIRL-I 275
SPLISLM DQ L ++GV A F+ S N+V +A G Y ++YV PE RL
Sbjct: 64 SPLISLMKDQVDALEQYGVPATFINSSLTFNEVRSRIGRAAAGKYKLLYVAPE---RLEA 120
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
+ L E+ ++ AIDE HCVS+WGHDFRP Y L LKSL + A
Sbjct: 121 DSFRGLLETLNVSFLAIDEAHCVSQWGHDFRPSYLHLGPF--------LKSLPRKPLIGA 172
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFC 390
TATAT +V+ DI++ L + K FV T F RPNL FS + R KKDF
Sbjct: 173 FTATATEEVQSDIIRLLELKKPKVFV-TGFDRPNLTFS------TLRGENKKDFV 220
Score = 122 bits (306), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 98/173 (56%), Gaps = 13/173 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY TRKE ++ +L G+KA Y+A + +R +F +++ V+VAT AFGMG
Sbjct: 233 IIYAGTRKEVDNLQNFLTKSGLKAGKYHAGMSDEDRKRSQDDFLFDEITVMVATNAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM--------PTLLPS 627
IDK NVR +IHY P+++EAYYQEAGRAGRDG +C+L + + T+
Sbjct: 293 IDKSNVRYVIHYNMPKNMEAYYQEAGRAGRDGEPGECLLLFSPQDVVLQRYLIEQTVFQP 352
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVD 680
R ++ K+ M+ C +T C K ++EYFGE+ E+C C C D
Sbjct: 353 ERKMNELKKLQGMVDYC-----HTPRCLRKTILEYFGEEDVVEECGNCSSCND 400
>gi|229591882|ref|YP_002874001.1| ATP-dependent DNA helicase [Pseudomonas fluorescens SBW25]
gi|229363748|emb|CAY51154.1| ATP-dependent DNA helicase [Pseudomonas fluorescens SBW25]
Length = 708
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIKRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + +S IALFAIDE HCVS+WGHDFR +Y +L L E F D+P +A
Sbjct: 121 PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I++ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVERLHLQNAERF-LSSFDRPNIFYRI 209
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 110/204 (53%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +LC G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLSERRSDA-GIVYCLSRKKVDEVAAFLCEQGYPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP ++ R H + F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NETRSAHQKRFLNEEGLIMVATIAFGMGIDKSNVRFVAHMDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 317 GRAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED + C CD CVDG
Sbjct: 377 TLLAYFDEDMP-QPCGHCDNCVDG 399
>gi|421868326|ref|ZP_16299976.1| ATP-dependent DNA helicase RecQ [Burkholderia cenocepacia H111]
gi|444370507|ref|ZP_21170158.1| ATP-dependent DNA helicase RecQ [Burkholderia cenocepacia
K56-2Valvano]
gi|358071686|emb|CCE50854.1| ATP-dependent DNA helicase RecQ [Burkholderia cenocepacia H111]
gi|443597336|gb|ELT65770.1| ATP-dependent DNA helicase RecQ [Burkholderia cenocepacia
K56-2Valvano]
Length = 615
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/229 (42%), Positives = 137/229 (59%), Gaps = 24/229 (10%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV----VVI 219
+L + FG+S+ + Q E + DCLVL TG GKSLC+QIPALL + +V+
Sbjct: 7 ILDEVFGYSAFRGQQGEIVEHVAGGGDCLVLMPTGGGKSLCYQIPALLRREAGQGAGIVV 66
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVI--RL 274
SPLI+LM DQ + LS+ GV A +L S + ++ALR G ++YV PE ++ R
Sbjct: 67 SPLIALMQDQVAALSEVGVRAAYLNSTLSGAEAAATERALREGEIDLLYVAPERLMTGRF 126
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
++ L+R I LFAIDE HCVS+WGHDFRP+Y +LSVL E F + +P +
Sbjct: 127 LELLERAK----IGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPS---------VPRI 173
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
ALTATA R++I+ L + FV +SF RPN+R+ + K ++RA
Sbjct: 174 ALTATADAITRDEIIHRLALDDARVFV-SSFDRPNIRYRIVE-KDNARA 220
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 130/267 (48%), Gaps = 26/267 (9%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVV 567
DG T ++Y +R++ A++L GV+A Y+A + + ++R+ H E F + V+
Sbjct: 234 DGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGM-EFEVRQKHQEMFQREEGIVMC 292
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 293 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKM 352
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D T CR L+ YFGE + + C CD C++ PP
Sbjct: 353 IDESDADDAHKRVQTSKLDALLGLCETISCRRVRLLNYFGE--ASQPCGNCDTCLE-PPA 409
Query: 685 MKNLKEEANILM------QVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIR 738
+ EA + + Q + +N S+ + + I G + +K + R + ++ I
Sbjct: 410 SWDATREAQMALSCVFRAQRASGFNFGSSHLIE---ILRGGRTEKVLQRGHDQLSTFGIG 466
Query: 739 EQSQKYLATDLLWWRGLARIMENKGYI 765
A WR + R + GY+
Sbjct: 467 A------ALSEPEWRAIFRQLVAYGYL 487
>gi|284040794|ref|YP_003390724.1| ATP-dependent DNA helicase RecQ [Spirosoma linguale DSM 74]
gi|283820087|gb|ADB41925.1| ATP-dependent DNA helicase RecQ [Spirosoma linguale DSM 74]
Length = 736
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 134/214 (62%), Gaps = 15/214 (7%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK+ FG+S + Q+ + + LA + V+ TG+GKSLC+Q+PA+++ VVISPLI+
Sbjct: 16 LKEIFGYSQFRGEQEAIIYSILAGRNTFVIMPTGAGKSLCYQLPAIVSEGTAVVISPLIA 75
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQRL 281
LM +Q +L+ G+ A FL S NKV++ L G ++Y+ PE++ + + L L
Sbjct: 76 LMKNQVDQLNAFGINAQFLNSTLSKAEMNKVKKDTLNGTLKLLYIAPESLTKE-ENLDFL 134
Query: 282 AESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341
++ I+ AIDE HC+S+WGHDFRP+YR++ + +N G ++P++ALTATAT
Sbjct: 135 KKA-NISFVAIDEAHCISEWGHDFRPEYRKIRGIVDNIG---------NLPVIALTATAT 184
Query: 342 IQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+V++DI K+L M + TSF R NL + ++
Sbjct: 185 PKVQQDIQKNLQMEDANLYK-TSFNRKNLYYEIR 217
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 99/186 (53%), Gaps = 4/186 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK IA+ L VKA Y+A L F ++V+ ATIAFGMG
Sbjct: 239 IIYCLSRKTVEEIAELLRVNDVKALPYHAGLDPVTRMNNQDAFLNEDVDVICATIAFGMG 298
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR +IHY P+SLE YYQE GRAGRDG +C+++ + + L + + T+
Sbjct: 299 IDKPDVRFVIHYDAPKSLEGYYQETGRAGRDGLEGNCLMFYSFDDIVKLEKFNKDKPVTE 358
Query: 636 Q--AYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEAN 693
+ A +L++ Y N CR + L+ YFGE F + C CD C+ P + K E
Sbjct: 359 RDNAKHLLTEMVSYA-NLGVCRRRQLLGYFGE-FMEKDCGFCDNCLKSPEKFKAQHEVVL 416
Query: 694 ILMQVI 699
L V+
Sbjct: 417 ALQTVL 422
>gi|380797039|gb|AFE70395.1| Bloom syndrome protein, partial [Macaca mulatta]
Length = 786
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 131/219 (59%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 27 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 86
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE + RLI
Sbjct: 87 SLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLI 146
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 147 STLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 197
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + + F + SF R NL++ V
Sbjct: 198 LTATANPRVQKDILTQLKILRPQVFSM-SFNRHNLKYYV 235
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 101/182 (55%), Gaps = 14/182 (7%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVV 567
P + G IIY +R+E ++A L G+ A AY+A L S V ++ +++ +V+
Sbjct: 256 PYDSG--IIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVIC 313
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--- 624
ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L
Sbjct: 314 ATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRL 373
Query: 625 -LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL-----CD 676
+ + T++ + L Y N + CR L+ YFGE+ F+ + C+ CD
Sbjct: 374 IIMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCD 433
Query: 677 VC 678
C
Sbjct: 434 NC 435
>gi|374572158|ref|ZP_09645254.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. WSM471]
gi|374420479|gb|EHR00012.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. WSM471]
Length = 621
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 131/217 (60%), Gaps = 19/217 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+L+ FG + Q E + +CLVL TG GKSLC+Q+PALL VV+SPL
Sbjct: 20 SVLRSVFGLPGFRGAQGEIIRHVTDGGNCLVLMPTGGGKSLCYQLPALLREGCGVVVSPL 79
Query: 223 ISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKP-- 277
I+LM DQ + + + GV A L S Q + +E++ + G ++YV PE RL+ P
Sbjct: 80 IALMRDQVAAMLEAGVNAAALNSSLTPQEASDIERRLIAGDLDLLYVAPE---RLVTPRC 136
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L LA ++ +ALFAIDE HCVS+WGHDFRP+Y LS++ E F D+P +ALT
Sbjct: 137 LALLARAK-VALFAIDEAHCVSQWGHDFRPEYVGLSIIAERFP---------DVPRIALT 186
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ATA R++I++ L ++ FV +SF RPN+R+ +
Sbjct: 187 ATADELTRKEIVERLALADSPHFV-SSFDRPNIRYEI 222
Score = 112 bits (280), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 141/297 (47%), Gaps = 22/297 (7%)
Query: 479 SPHRDRDTDRS---FERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF 535
SPH DR +E D N ++ +++E ++Y +RK +A L
Sbjct: 206 SPHFVSSFDRPNIRYEIVDKRNAVSQLKDLIRERHAGDAGVVYCLSRKRVEEVAAALDDA 265
Query: 536 GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEA 595
G+ A Y+A L S R F V+VATIAFGMGIDK +VR + H P+S+EA
Sbjct: 266 GIAALPYHAGLDSSVRSRNQDRFLNEDGIVIVATIAFGMGIDKPDVRFVAHLDLPKSIEA 325
Query: 596 YYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT--KQAYRMLS----DCFRYGM 649
YYQE GRAGRDG + + LS ++ RR D++ + ++ +S D
Sbjct: 326 YYQETGRAGRDGKPSAAWMAYGLSD---IVQQRRMIDESSGSEEFKRVSIGKLDALVGLA 382
Query: 650 NTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSM 709
T CR + L+ YFGE E C CD C+ PP+M++ K A L+ + ++ +M
Sbjct: 383 ETPHCRRRRLLAYFGEIVMGEGCGNCDNCLT-PPKMRDGKVLAQKLLSCVYRTGQRFGAM 441
Query: 710 DDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYI 765
D + G +K + K+ V I RE ++K WR + R + G++
Sbjct: 442 HLID-VLIGRLTEKVTQFGHDKLTVFGIGRELNEKQ-------WRTVLRQLVAMGHL 490
>gi|388468368|ref|ZP_10142578.1| ATP-dependent DNA helicase RecQ [Pseudomonas synxantha BG33R]
gi|388011948|gb|EIK73135.1| ATP-dependent DNA helicase RecQ [Pseudomonas synxantha BG33R]
Length = 709
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIKRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + +S IALFAIDE HCVS+WGHDFR +Y +L L E F D+P +A
Sbjct: 121 PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I++ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVERLHLQNAERF-LSSFDRPNIFYRI 209
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 110/204 (53%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +LC G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLSERRSDA-GIVYCLSRKKVDEVAAFLCEQGYPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP ++ R H + F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NETRSAHQKRFLNEEGLIMVATIAFGMGIDKSNVRFVAHMDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 317 GRAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED + C CD C+DG
Sbjct: 377 TLLAYFDEDMP-QPCGHCDNCIDG 399
>gi|107024309|ref|YP_622636.1| ATP-dependent DNA helicase RecQ [Burkholderia cenocepacia AU 1054]
gi|116688366|ref|YP_833989.1| ATP-dependent DNA helicase RecQ [Burkholderia cenocepacia HI2424]
gi|170731676|ref|YP_001763623.1| ATP-dependent DNA helicase RecQ [Burkholderia cenocepacia MC0-3]
gi|254246602|ref|ZP_04939923.1| ATP-dependent DNA helicase RecQ [Burkholderia cenocepacia PC184]
gi|105894498|gb|ABF77663.1| ATP-dependent DNA helicase RecQ [Burkholderia cenocepacia AU 1054]
gi|116646455|gb|ABK07096.1| ATP-dependent DNA helicase RecQ [Burkholderia cenocepacia HI2424]
gi|124871378|gb|EAY63094.1| ATP-dependent DNA helicase RecQ [Burkholderia cenocepacia PC184]
gi|169814918|gb|ACA89501.1| ATP-dependent DNA helicase RecQ [Burkholderia cenocepacia MC0-3]
Length = 615
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 132/220 (60%), Gaps = 23/220 (10%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV----VVI 219
+L + FG+S+ + Q E + DCLVL TG GKSLC+QIPALL + +V+
Sbjct: 7 ILDEVFGYSAFRGQQGEIVEHVAGGGDCLVLMPTGGGKSLCYQIPALLRREAGQGAGIVV 66
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVI--RL 274
SPLI+LM DQ + LS+ GV A +L S + ++ALR G ++YV PE ++ R
Sbjct: 67 SPLIALMQDQVAALSEVGVRAAYLNSTLSGAEAAATERALREGEIDLLYVAPERLMTGRF 126
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
++ L+R I LFAIDE HCVS+WGHDFRP+Y +LSVL E F + +P +
Sbjct: 127 LELLERAK----IGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPS---------VPRI 173
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA R++I+ L + FV +SF RPN+R+ +
Sbjct: 174 ALTATADAITRDEIIHRLALDDARVFV-SSFDRPNIRYRI 212
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 130/267 (48%), Gaps = 26/267 (9%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVV 567
DG T ++Y +R++ A++L GV+A Y+A + + ++R+ H E F + V+
Sbjct: 234 DGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGM-EFEVRQKHQEMFQREEGIVMC 292
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 293 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKM 352
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D T CR L+ YFGE + + C CD C++ PP
Sbjct: 353 IDESDADDAHKRVQTSKLDALLGLCETISCRRVRLLNYFGE--ASQPCGNCDTCLE-PPA 409
Query: 685 MKNLKEEANILM------QVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIR 738
+ EA + + Q + +N S+ + + I G + +K + R + ++ I
Sbjct: 410 SWDATREAQMALSCVFRAQRASGFNFGSSHLIE---ILRGGRTEKVLQRGHDQLSTFGIG 466
Query: 739 EQSQKYLATDLLWWRGLARIMENKGYI 765
A WR + R + GY+
Sbjct: 467 A------ALSEPEWRAIFRQLVAYGYL 487
>gi|294499016|ref|YP_003562716.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium QM B1551]
gi|294348953|gb|ADE69282.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium QM B1551]
Length = 711
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/252 (39%), Positives = 142/252 (56%), Gaps = 27/252 (10%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+ +FG+ S + Q+E++ L H+ + TG GKSLC+QIP+LL +VISPLIS
Sbjct: 10 LQSYFGYDSFRKGQEESIRYVLEGHNTACIMPTGGGKSLCYQIPSLLLEGTTLVISPLIS 69
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETV--IRLIKPLQ 279
LM DQ L+ G+ A ++ S +V+Q+ G Y ++YV PE + + ++ LQ
Sbjct: 70 LMKDQVDTLNAAGIPATYINSSLTHTEVQQRLEEVALGEYKLLYVAPERLESPQFLEQLQ 129
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL-MALTA 338
L I L A+DE HC+S+WGHDFRP Y R+ N L S + P+ M LTA
Sbjct: 130 MLP----IPLVAVDEAHCISQWGHDFRPSYLRI---------NELISKLSNAPIVMGLTA 176
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLID---- 394
TAT QVREDI ++LH+++ V+T F R NL F+V K R SY + + + D
Sbjct: 177 TATPQVREDICRALHINEEYT-VMTGFERENLSFAV--VKGQDRISYIEQYIRKNDQEAG 233
Query: 395 -IYTKKKKTGEK 405
IY +K E+
Sbjct: 234 IIYAATRKDVEE 245
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 110/206 (53%), Gaps = 22/206 (10%)
Query: 490 FERTDL---LNKPAERLSMLQEPL---EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYN 543
FER +L + K +R+S +++ + + IIY TRK+ + L GV + Y+
Sbjct: 202 FERENLSFAVVKGQDRISYIEQYIRKNDQEAGIIYAATRKDVEELHARLQKSGVNVSKYH 261
Query: 544 ASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRA 603
A + + F ++ ++V+VAT AFGMGIDK N+R ++HY P+++E+YYQEAGRA
Sbjct: 262 AGMNGNSRDEEQNRFLQDDVQVMVATSAFGMGIDKSNIRFVLHYQLPKNMESYYQEAGRA 321
Query: 604 GRDGHLADC-VLYAN--------LSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCC 654
GRDG ++C VLY+ L T P ++ +D K L + Y C
Sbjct: 322 GRDGLPSECIVLYSPQDIRVQRFLIEQSTSNPKKQIQDLEK-----LQNMVNYCHTEGCL 376
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVD 680
+A IL YFGE +HE C C C D
Sbjct: 377 QAYIL-HYFGESEAHE-CGRCSNCTD 400
>gi|242063976|ref|XP_002453277.1| hypothetical protein SORBIDRAFT_04g003070 [Sorghum bicolor]
gi|241933108|gb|EES06253.1| hypothetical protein SORBIDRAFT_04g003070 [Sorghum bicolor]
Length = 1154
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 138/226 (61%), Gaps = 18/226 (7%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W + + + FG+ S + Q+E ++A ++ +D VL TG GKSL +Q+PAL++ +
Sbjct: 425 WTKDLEAKNRNKFGNRSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALISVGLT 484
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGM----YSIIYVCPETVI 272
+V+ PL+SL+ DQ LS+ + A +L SG D +Q+ +R + Y ++YV PE +
Sbjct: 485 LVVCPLVSLIQDQIMHLSQANIPATYL-SGNLDWSEQQEIMRDLKSCRYKLLYVTPEKIA 543
Query: 273 R--LIKPLQRLAESRG-IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKF 329
R + L R +S+G ++ IDE HCVS+WGHDFRPDY+ L VL++NF
Sbjct: 544 RSGALSGLLRDLDSQGHLSRIVIDEAHCVSQWGHDFRPDYKELGVLKQNFPKT------- 596
Query: 330 DIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
P++ALTATAT +V+ED++++L + F SF RPNLR+ ++
Sbjct: 597 --PVLALTATATARVKEDVVQALALENCIVFK-QSFNRPNLRYYLR 639
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 104/241 (43%), Gaps = 58/241 (24%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R + +++ L G A Y+ S+ R+ ++ ++K+ ++ ATIAFGMG
Sbjct: 663 IIYCLSRMDCEKVSEKLRECGHTVAHYHGSMDPVNRTRIQEDWSKDKINIICATIAFGMG 722
Query: 576 -------------------------IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLA 610
I+K +VR +IH+ P+S+E Y+QE GRAGRDG +
Sbjct: 723 NLIFQTPVYVTSIIGCSILIGQTVGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQPS 782
Query: 611 DCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHE 670
C+LY SD Y N CR + + +FGE F
Sbjct: 783 SCLLYYQ-----------------------YSDYVSYCENDVDCRRLLQLIHFGERFDPS 819
Query: 671 KC-QLCDVCVDGPPEMKNLKEEANILMQVI--AAYNEQSNSMDDDDGIYSG-----IKKQ 722
C + CD C+ ++ K+ NI Q++ SNS +Y G +KKQ
Sbjct: 820 LCAKTCDNCLKESGWVE--KDVTNIARQLVDLVTMTGHSNSSTHILEVYRGSVSQNVKKQ 877
Query: 723 K 723
+
Sbjct: 878 R 878
>gi|37528437|ref|NP_931782.1| ATP-dependent DNA helicase RecQ [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787875|emb|CAE16992.1| ATP-dependent DNA helicase RecQ [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 608
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 134/214 (62%), Gaps = 15/214 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+K FG+ ++ Q++ + L DCLV+ TG GKSLC+QIPAL+ V +V+SPLI
Sbjct: 16 VLRKTFGYLQFRSGQQQVIDTILEGRDCLVIMPTGGGKSLCYQIPALVQEGVTLVVSPLI 75
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +GV A L S Q + V ++ +GM ++Y+ PE ++ + L++
Sbjct: 76 SLMKDQVDQLRANGVAADCLNSTQAREQQIDVIRRCRQGMIKLLYIAPERLM-MDNFLEQ 134
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
L E + A+ A+DE HC+S+WGHDFRP+YR L LR+ F +P++ALTATA
Sbjct: 135 LLEWQP-AMLAVDEAHCISQWGHDFRPEYRALGQLRQRFPT---------LPVIALTATA 184
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
R DI++ L+++ + +SF RPN+R+++
Sbjct: 185 DETTRNDIVRLLNLNNPLIHI-SSFDRPNIRYTL 217
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 111/205 (54%), Gaps = 15/205 (7%)
Query: 487 DRSFERTDLLNK--PAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544
DR R L+ K P ++L + + I+Y +R I++ L G+ A Y+A
Sbjct: 209 DRPNIRYTLIEKYKPLDQLWLFIRGQKGKSGIVYCNSRSRVEEISERLQKRGLSVAPYHA 268
Query: 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAG 604
L SQ RV F + L+VVVAT+AFGMGI+K NVR ++H+ P+++E+YYQE GRAG
Sbjct: 269 GLDNSQRARVQDAFQRDDLQVVVATVAFGMGINKPNVRFVVHFNIPRNIESYYQETGRAG 328
Query: 605 RDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMN-------TSCCRAK 657
RDG A+ VL+ + + M L RR ++ + + D R+ +N CR
Sbjct: 329 RDGLPAEAVLFYDPADMVWL---RRCLEEKEVGTQ--QDIERHKLNAMGAFAEAQTCRRL 383
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDGP 682
+L+ YFGE C CD+C+D P
Sbjct: 384 VLLNYFGES-KQTPCGNCDICLDPP 407
>gi|157278040|ref|NP_001098120.1| Bloom syndrome helicase [Oryzias latipes]
gi|140083401|gb|ABO84823.1| Bloom syndrome helicase [Oryzias latipes]
Length = 1393
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 129/219 (58%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + Q EA++A L D VL TG GKSLC+Q+PA ++ V VV+SPL
Sbjct: 637 IFHKRFGLHQFRFNQLEAINAALLGEDAFVLMPTGGGKSLCYQLPACVSPGVTVVVSPLK 696
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A L + D++ + ++ + ++YV PE V RLI
Sbjct: 697 SLIVDQIQKLTTLDIPATSLSGDKSDSEAGRIYMQLSRKDPLIKLLYVTPEKVSASGRLI 756
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
LQ L E +A F IDE HCVS+WGHDFRPD++RL LR+ F + + +MA
Sbjct: 757 SALQNLYERGLLARFIIDEAHCVSQWGHDFRPDFKRLHELRQKFPS---------VRMMA 807
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATAT +V++DIL L+M + F + SF R NL++SV
Sbjct: 808 LTATATPRVQKDILNQLNMMRPQVFTM-SFNRSNLKYSV 845
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 110/197 (55%), Gaps = 13/197 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVVATIAFGM 574
I+Y +R + ++A+ L G++A +Y+A L V +++ +++ +V+ ATIAFGM
Sbjct: 871 IVYCLSRNDCDAMAESLKRAGIQALSYHAGLSDGDREYVQSKWINQDGCQVICATIAFGM 930
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSE 631
GIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L Y ++ + ++ R
Sbjct: 931 GIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGEISHCILFYSYTDVHRIKRIISMDREG 990
Query: 632 DQTKQA--YRMLSDCFRYGMNTSCCRAKILVEYFGE-DFSHEKCQ-----LCDVCVD-GP 682
D +A + L + N CR L+ YFGE +F+ C+ CD C
Sbjct: 991 DSHTKATHFNNLHSMVHFCENVMECRRIQLLAYFGELNFNRNFCKDHPDVSCDNCAKPNQ 1050
Query: 683 PEMKNLKEEANILMQVI 699
+MKN+ E+ +++ +
Sbjct: 1051 YQMKNVTEDVKKIVRFV 1067
>gi|118590546|ref|ZP_01547948.1| probable atp-dependent dna helicase protein [Stappia aggregata IAM
12614]
gi|118437009|gb|EAV43648.1| probable atp-dependent dna helicase protein [Stappia aggregata IAM
12614]
Length = 629
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/251 (39%), Positives = 141/251 (56%), Gaps = 27/251 (10%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
E K ++L+K FG+SS + Q+ + + D +VL TG+GKSLC+QIPAL V +
Sbjct: 26 EPKPLAVLQKVFGYSSFRGKQQAVIETLVDGKDAVVLFPTGAGKSLCYQIPALCRRGVGI 85
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRL 274
V+SPLI+LM DQ L GV A + S + + + RG ++YV PE RL
Sbjct: 86 VVSPLIALMKDQVGALRAAGVQAAAINSTLSPEEQDSIRSALRRGEIDLLYVTPE---RL 142
Query: 275 -IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
+ ++ ++ IALFAIDE HCVS+WGHDFRP+Y LS LR+ + +P
Sbjct: 143 GTENFRKFLDTLQIALFAIDEAHCVSQWGHDFRPEYMSLSCLRDRYPG---------VPR 193
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLI 393
+ALTATA ++DIL L M + F TSF RPN+R+ + +T+ R QL+
Sbjct: 194 VALTATADPHTQKDILARLQMEDASVFS-TSFDRPNIRYEIVE-RTNQRQ-------QLL 244
Query: 394 DIYTKKKKTGE 404
D KK +GE
Sbjct: 245 DFL--KKHSGE 253
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 139/289 (48%), Gaps = 24/289 (8%)
Query: 489 SFERTDLLNKPAERLSMLQEPL--------EDGLTIIYVPTRKETLSIAKYLCGFGVKAA 540
SF+R ++ + ER + Q+ L E G I+Y +R + IA++L G++A
Sbjct: 223 SFDRPNIRYEIVERTNQRQQLLDFLKKHSGESG--IVYCLSRAKVEDIAEWLTSKGIRAL 280
Query: 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP Q F + +VAT+AFGMGIDK +VR + H P S+EAYYQE
Sbjct: 281 PYHAGLPAEQRSANQDAFLLEEGLCLVATVAFGMGIDKPDVRYVAHLDLPSSVEAYYQET 340
Query: 601 GRAGRDGHLADCVL---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG ++ + A+L ++ + ++ K+A + T+ CR +
Sbjct: 341 GRAGRDGAPSEAFMAYGMADLVQRRRMIAEGDAPEEVKRAENAKLNALLGICETAGCRRQ 400
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYS 717
L+ +FGE + + C CD C+ P E + E A LM I ++ + D +
Sbjct: 401 ALLAHFGETYP-KPCGNCDTCLS-PVETWDGTEAAQKLMSAIYRTGQRFGTAHVID-VLL 457
Query: 718 GIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYI 765
G +K + K+ V I ++ QK W+ +AR + GY+
Sbjct: 458 GKTNEKSTRFGHEKLSVFGIGQDVPQKT-------WQSIARQLVAAGYV 499
>gi|255037353|ref|YP_003087974.1| ATP-dependent DNA helicase RecQ [Dyadobacter fermentans DSM 18053]
gi|254950109|gb|ACT94809.1| ATP-dependent DNA helicase RecQ [Dyadobacter fermentans DSM 18053]
Length = 737
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 134/219 (61%), Gaps = 19/219 (8%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK+ FG+S + Q+ + L + V+ TG+GKSLC+Q+PAL++ + +VISPLI+
Sbjct: 17 LKEIFGYSQFRGDQEVIIQNILLGKNTFVIMPTGAGKSLCYQLPALVSDGLTIVISPLIA 76
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRL--IKPLQ 279
LM +Q +L+ G+ A FL S +V+ AL G ++Y+ PE++ + + L+
Sbjct: 77 LMKNQVDQLTAFGINAQFLNSTLTKAEMTRVKTDALDGTLKLLYIAPESLTKEDNLDFLK 136
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
R+ I+ AIDE HC+S+WGHDFRP+YRR+ + EN G ++P++ALTAT
Sbjct: 137 RVK----ISFVAIDEAHCISEWGHDFRPEYRRIHGIIENIG---------NLPIIALTAT 183
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
AT +V++DI K+L M + F +SF R NL + ++ K
Sbjct: 184 ATPKVQQDIRKNLQMEEAETFK-SSFNRKNLYYEIRPKK 221
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 104/186 (55%), Gaps = 5/186 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK +A+ L V+A Y+A L + F + +V+VATIAFGMG
Sbjct: 240 IVYCLSRKTVEEVAELLNVNDVRALPYHAGLDANTRMANQDAFLNEECDVIVATIAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR +IHY P+SLE YYQE GRAGRDG +C+++ + + L + + T+
Sbjct: 300 IDKPDVRFVIHYDVPKSLEGYYQETGRAGRDGLEGNCLMFYSYDDIQKLEKFNKDKTVTE 359
Query: 636 Q--AYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEAN 693
+ A +L++ Y CR + L+ YFGE + + C CD C + P E ++++
Sbjct: 360 RDNARHLLNEMVAYS-TLGVCRRRQLLSYFGE-YLEKDCGYCDNC-NKPTEKIKVQDDVI 416
Query: 694 ILMQVI 699
++++ +
Sbjct: 417 LILKSV 422
>gi|387894918|ref|YP_006325215.1| ATP-dependent DNA helicase RecQ [Pseudomonas fluorescens A506]
gi|387163933|gb|AFJ59132.1| ATP-dependent DNA helicase RecQ [Pseudomonas fluorescens A506]
Length = 709
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIKRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + +S IALFAIDE HCVS+WGHDFR +Y +L L E F D+P +A
Sbjct: 121 PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I++ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVERLHLQNAERF-LSSFDRPNIFYRI 209
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 105/203 (51%), Gaps = 12/203 (5%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +LC G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLSERRSDA-GIVYCLSRKKVDEVAAFLCEQGYPALP 257
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A LP F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE G
Sbjct: 258 YHAGLPNETRSAHQKRFLNEEGLIMVATIAFGMGIDKSNVRFVAHMDLPKSLEAYYQETG 317
Query: 602 RAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 318 RAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQT 377
Query: 659 LVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED E C CD C+DG
Sbjct: 378 LLAYFDEDMP-EPCGHCDNCIDG 399
>gi|259502427|ref|ZP_05745329.1| ATP-dependent helicase RecQ [Lactobacillus antri DSM 16041]
gi|259169570|gb|EEW54065.1| ATP-dependent helicase RecQ [Lactobacillus antri DSM 16041]
Length = 596
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 129/223 (57%), Gaps = 16/223 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK +FG + ++ QKE +S + + L + TG GKSLC+QIPAL+ V +V+SPLI
Sbjct: 6 VLKDNFGFKTFRSGQKEVISRVINGENVLAVMPTGGGKSLCYQIPALVKPGVTLVVSPLI 65
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRL-IKPLQ 279
SLM DQ L ++G+ A + S P N + ++A G +IYV PE RL ++ +
Sbjct: 66 SLMKDQVDALRQNGIAAAAINSTIPQAEVNPILRQAYEGRIKLIYVTPE---RLNMEYFR 122
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ L AIDE HC+S+WGHDFRP YR+L + L+ ++ALTAT
Sbjct: 123 YQLNFLPVDLVAIDEAHCISQWGHDFRPAYRQLKA--------AIDQLRSRPNILALTAT 174
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
AT V+ DI + L + K FV+TSF RPN+ F V H SSR
Sbjct: 175 ATPAVQADIGEQLAIEKAN-FVVTSFARPNISFQVVHPTNSSR 216
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570
+D IIYV TRK + YL + AAY+A + + RV +F +++ +VAT
Sbjct: 227 QDEAGIIYVNTRKGVDQLTAYLLEHQLSVAAYHAGMDPASRARVQDDFQFDRVSTIVATS 286
Query: 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT----LLP 626
AFGMGIDK NVR +IH Q++E+YYQEAGRAGRDG ++ +L + + + +
Sbjct: 287 AFGMGIDKSNVRFVIHATSAQNIESYYQEAGRAGRDGLPSEAILIYHPNDLRQYRWFIDQ 346
Query: 627 SRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVD 680
S ++D Y+ L Y +T C + +V YFG+D C C C D
Sbjct: 347 STAADDYRDLQYQKLQAVANYA-STPECLQQYIVRYFGQDCP--PCGHCSNCTD 397
>gi|149690733|ref|XP_001502766.1| PREDICTED: Bloom syndrome protein [Equus caballus]
Length = 1421
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 129/219 (58%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + Q EA++A L DC +L TG GKSLC+Q+PA ++ V +VISPL
Sbjct: 664 IFHKKFGLHHFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLR 723
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 724 SLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLI 783
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L E + +A F IDE HCVS+WGHDFR DY+R+++LR+ F + +P+MA
Sbjct: 784 TTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPS---------VPVMA 834
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + F + SF R NL++ V
Sbjct: 835 LTATANPRVQKDILTQLKILSPQVFSM-SFNRHNLKYYV 872
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 99/184 (53%), Gaps = 14/184 (7%)
Query: 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEV 565
P + G IIY +R+E ++A L G+ A AY+A L S V H +++ +V
Sbjct: 891 HHPYDSG--IIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDAVQHKWINQDGCQV 948
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL- 624
+ ATIAFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + L
Sbjct: 949 ICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLK 1008
Query: 625 ---LPSRRSEDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL----- 674
L + TK+ + L Y N + CR L+ YFGE F+ + C+
Sbjct: 1009 RLILMEKDGNHHTKETHFNNLYSMVHYCENIAECRRIQLLAYFGEHGFNPDFCKKYPDVS 1068
Query: 675 CDVC 678
CD C
Sbjct: 1069 CDNC 1072
>gi|338989469|ref|ZP_08634307.1| ATP-dependent DNA helicase RecQ [Acidiphilium sp. PM]
gi|338205598|gb|EGO93896.1| ATP-dependent DNA helicase RecQ [Acidiphilium sp. PM]
Length = 610
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 131/222 (59%), Gaps = 15/222 (6%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
D ++ ++L++ FGH + Q++ ++ +A HD LVL TG GKS+C+Q+PA+ V
Sbjct: 12 DIAIEPEAVLRRVFGHDGFRGPQRDIVTHVIAGHDALVLMPTGGGKSICYQLPAICRQGV 71
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSG--QPDNKVEQKALR-GMYSIIYVCPETVI 272
+V+SPLI+LM +Q L + GV A S + +ALR G ++YV PE ++
Sbjct: 72 GIVVSPLIALMRNQVEALRQLGVRAAAFNSSLEAAERATVLRALRAGELDLLYVAPERLV 131
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
+ L S IALFAIDE HCVS+WGHDFRP+Y +L+ + E F +P
Sbjct: 132 --TEDFLALLGSVRIALFAIDEAHCVSQWGHDFRPEYLQLATIGERFPG---------VP 180
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+ALTATA Q R+DI + L + G + ++SF RPNL +++
Sbjct: 181 RIALTATADPQTRDDIARRLGLD-GARLFISSFDRPNLTYAI 221
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 99/199 (49%), Gaps = 10/199 (5%)
Query: 489 SFERTDLLNKPAERLSMLQEPL------EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R +L A ++ ++ L E I+Y +R A +L G G++A Y
Sbjct: 211 SFDRPNLTYAIAPKIEPRRQLLAFLRGHEGECGIVYCLSRAAVEETASWLAGQGLRALPY 270
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L + R F ++VATIAFGMGIDK ++R + H P SLEAYYQE GR
Sbjct: 271 HAGLDAATRNRNQDAFLGEDGLILVATIAFGMGIDKPDIRFVAHLDLPSSLEAYYQETGR 330
Query: 603 AGRDGHLADCVLYANLSSMPT---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A+ ++ + + L+ + D+ K+ R T+ CR + +
Sbjct: 331 AGRDGAPAETLMLYGMQDVALRGRLIDQSDAPDEVKRIARAKLGALLGVCETAGCRRRAV 390
Query: 660 VEYFGEDFSHEKCQLCDVC 678
+ +FGE + + C CD C
Sbjct: 391 LAHFGETYPGD-CGRCDNC 408
>gi|148261092|ref|YP_001235219.1| ATP-dependent DNA helicase RecQ [Acidiphilium cryptum JF-5]
gi|146402773|gb|ABQ31300.1| ATP-dependent DNA helicase RecQ [Acidiphilium cryptum JF-5]
Length = 625
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 139/248 (56%), Gaps = 22/248 (8%)
Query: 134 CNLKAESDSLAVSCPKEVEI----GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHH 189
C ES + CP ++ D ++ ++L++ FGH + Q++ ++ +A H
Sbjct: 4 CRRPGESPT---PCPVRIDPPRRPTEDIAIEPEAVLRRVFGHDGFRGPQRDIVTHVIAGH 60
Query: 190 DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSG--Q 247
D LVL TG GKS+C+Q+PA+ V +V+SPLI+LM +Q L + GV A S
Sbjct: 61 DALVLMPTGGGKSICYQLPAICRRGVGIVVSPLIALMRNQVEALRQLGVRAAAFNSSLEA 120
Query: 248 PDNKVEQKALR-GMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFR 306
+ +ALR G ++YV PE ++ + L S IALFAIDE HCVS+WGHDFR
Sbjct: 121 AERATVLRALRAGELDLLYVAPERLV--TEDFLALLGSVRIALFAIDEAHCVSQWGHDFR 178
Query: 307 PDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFF 366
P+Y +L+ + E F +P +ALTATA Q R+DI + L + G + ++SF
Sbjct: 179 PEYLQLATIGERFPG---------VPRIALTATADPQTRDDIARRLGLD-GARLFISSFD 228
Query: 367 RPNLRFSV 374
RPNL +++
Sbjct: 229 RPNLTYAI 236
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 99/199 (49%), Gaps = 10/199 (5%)
Query: 489 SFERTDLLNKPAERLSMLQEPL------EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R +L A ++ ++ L E I+Y +R A +L G G++A Y
Sbjct: 226 SFDRPNLTYAIAPKIEPRRQLLAFLRGHEGECGIVYCLSRAAVEETASWLAGQGLRALPY 285
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L + R F ++VATIAFGMGIDK ++R + H P SLEAYYQE GR
Sbjct: 286 HAGLDAATRNRNQDAFLGEDGLILVATIAFGMGIDKPDIRFVAHLDLPSSLEAYYQETGR 345
Query: 603 AGRDGHLADCVLYANLSSMPT---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A+ ++ + + L+ + D+ K+ R T+ CR + +
Sbjct: 346 AGRDGAPAETLMLYGMQDVALRGRLIDQSDAPDEVKRIARAKLGALLGVCETAGCRRRAV 405
Query: 660 VEYFGEDFSHEKCQLCDVC 678
+ +FGE + + C CD C
Sbjct: 406 LAHFGETYPGD-CGRCDNC 423
>gi|332289590|ref|YP_004420442.1| ATP-dependent DNA helicase RecQ [Gallibacterium anatis UMN179]
gi|330432486|gb|AEC17545.1| ATP-dependent DNA helicase RecQ [Gallibacterium anatis UMN179]
Length = 613
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 134/228 (58%), Gaps = 15/228 (6%)
Query: 150 EVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPA 209
+ E+ S ++ S+L+ FG+ + Q++ ++A L +L ATG GKSLC+QIPA
Sbjct: 8 QAEVLSPDLIRAKSILQDVFGYQQFRQGQQQIIAATLQGQSSFILMATGGGKSLCYQIPA 67
Query: 210 LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQP---DNKVEQKALRGMYSIIYV 266
L + +V+SPLI+LM DQ +L+ +GV A +L S Q ++EQ+AL G ++Y+
Sbjct: 68 LCFPGLTLVVSPLIALMQDQVDQLTANGVAAAYLNSSQTLEQQREIEQQALSGKLKLLYI 127
Query: 267 CPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326
PE V + + ++ AIDE HC+S+WGHDFRP+Y +L L F
Sbjct: 128 SPEKV--MTTAFFYFIQQCQVSFIAIDEAHCISQWGHDFRPEYSQLRSLTRVFP------ 179
Query: 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
IP+MALTATA REDIL+ L++ + ++ SF RPN+R++V
Sbjct: 180 ---HIPIMALTATADRVTREDILELLNLQQPFVYI-GSFDRPNIRYTV 223
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 15/274 (5%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP E+L + + IIY +R + +A+ L G+ A AY+A +V +
Sbjct: 228 KPQEQLLKFVKSQKGKSGIIYANSRNKVERLAEMLQRKGISAKAYHAGFSNEIREQVQHD 287
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617
F + ++++VATIAFGMGI+K N+R ++HY P+S+EAYYQE GRAGRD A+ VL+ +
Sbjct: 288 FQRDNIQIIVATIAFGMGINKPNIRFVLHYDLPRSIEAYYQETGRAGRDDLPAEAVLFYD 347
Query: 618 LSS---MPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL 674
+ LL + Q L + CR +L+ YF E H+ C
Sbjct: 348 HQDYLWLNKLLQEKPDSSQKMIEQHKLQAMGEFA-EAQTCRRLVLLNYFAEH-RHQPCNN 405
Query: 675 CDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFV 734
CD+C++ P + L + IL V Q + G++ QK + + K+ V
Sbjct: 406 CDICLNPPKKYDGLIDAQKILSTVYR--TGQKFGSYYVIAVLRGVQNQKIQELQHDKLSV 463
Query: 735 SKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
I +++SQ+Y W + R + + G++ +
Sbjct: 464 FGIGKDKSQEY-------WHSVIRQLIHLGFLSQ 490
>gi|295425078|ref|ZP_06817784.1| ATP-dependent helicase RecQ [Lactobacillus amylolyticus DSM 11664]
gi|295065275|gb|EFG56177.1| ATP-dependent helicase RecQ [Lactobacillus amylolyticus DSM 11664]
Length = 590
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 131/218 (60%), Gaps = 16/218 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG+ ++ Q++ ++ L + L + TG+GKSLC+QIPALL V +VISPLI
Sbjct: 6 ILRNVFGYKVFRSGQEKVINLVLQRQNVLAVMPTGAGKSLCYQIPALLNSGVTLVISPLI 65
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ L ++G+ A L S P N + ++A G ++Y+ PE RL R
Sbjct: 66 SLMKDQIDSLHQNGIEAAALNSATPQEEVNPILRQAYEGKIKLLYMTPE---RLAMDYFR 122
Query: 281 LAESR-GIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ ++L A+DE HC+S+WGHDFRP YR++ + + SLK ++ALTAT
Sbjct: 123 YQLNFIDVSLVAVDEAHCISQWGHDFRPAYRQI--------LDGINSLKSKPNILALTAT 174
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHS 377
AT V++DI K L++ K +V+TSF RPNL F V +S
Sbjct: 175 ATPAVQDDIAKQLNIKK-ENYVVTSFVRPNLSFQVVNS 211
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 100/187 (53%), Gaps = 7/187 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y TRK I YL G+ AA+Y+ + + +F ++L+V+VAT AFGMG
Sbjct: 232 IVYTNTRKRVGEITAYLQRKGISAASYHGGMATEDRDCIQDDFQFDRLQVIVATNAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT----LLPSRRSE 631
IDK NVR +IH +++E+YYQEAGRAGRDG +L + + T + S ++
Sbjct: 292 IDKSNVRFVIHANSARNIESYYQEAGRAGRDGDPCSAILLYHPGDLATYRWFIDQSDAND 351
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEE 691
D K YR L+ +Y NTS C + +V YFG+D + C C C D + KE
Sbjct: 352 DYKKVQYRKLAAITQYA-NTSECLQQFIVRYFGQDCA--PCGKCSNCTDKRKLVDVTKEA 408
Query: 692 ANILMQV 698
I+ V
Sbjct: 409 REIIGTV 415
>gi|399009305|ref|ZP_10711744.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM17]
gi|425898170|ref|ZP_18874761.1| ATP-dependent DNA helicase RecQ [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397891744|gb|EJL08222.1| ATP-dependent DNA helicase RecQ [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|398112728|gb|EJM02583.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. GM17]
Length = 708
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 127/220 (57%), Gaps = 19/220 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVI--RL 274
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE ++ R+
Sbjct: 64 SPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIRRGEVKMLYLAPERLVQPRM 123
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ LQ L IALFAIDE HCVS+WGHDFRP+Y +L L E F +P +
Sbjct: 124 LAFLQNL----DIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFP---------QVPRI 170
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA + RE+I+ LH+ +F L+SF RPN+ + +
Sbjct: 171 ALTATADKRTREEIVNRLHLQDAERF-LSSFDRPNIFYRI 209
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 111/204 (54%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +LC G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLSERRSDA-GIVYCLSRKKVDEVAAFLCEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP S+LR H + F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-SELRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSS---MPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD + L + +L + +++ K+ + D + CR +
Sbjct: 317 GRAGRDGLPADAWMAYGLQDVLMLKQMLQNSEGDERHKRLEQHKLDAMLALCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED + C CD CVDG
Sbjct: 377 TLLAYFDEDMP-QPCGHCDNCVDG 399
>gi|242764771|ref|XP_002340840.1| RecQ family helicase MusN [Talaromyces stipitatus ATCC 10500]
gi|218724036|gb|EED23453.1| RecQ family helicase MusN [Talaromyces stipitatus ATCC 10500]
Length = 1574
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 133/239 (55%), Gaps = 24/239 (10%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----T 212
W V ++++ F + Q EA++A L D VL TG GKSLC+Q+P+++ T
Sbjct: 688 WSKDVRTVMRDRFHLKGFRPNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPSVIHSGRT 747
Query: 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFL-GSGQPDNKV-EQKALRGMYS-----IIY 265
V +V+SPL+SLM DQ L K G+ A F+ G P++K AL ++ ++Y
Sbjct: 748 KGVTIVVSPLLSLMEDQVDHLQKLGIKAFFINGDVTPEHKRWVMSALSSPFADRELELLY 807
Query: 266 VCPETV---IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGAN 322
V PE V + L L+ L +R +A IDE HCVS+WGHDFRPDY+ L R F
Sbjct: 808 VTPEMVNKNLTLRDILKTLHANRKLARLVIDEAHCVSQWGHDFRPDYKELGSFRSEFPG- 866
Query: 323 NLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381
IP+MALTATAT V+ D++ +L M KG + + SF RPNL + V K S+
Sbjct: 867 --------IPVMALTATATENVKIDVINNLRM-KGCEVLSQSFNRPNLTYDVLPKKGSA 916
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 108/197 (54%), Gaps = 7/197 (3%)
Query: 516 IIYVPTRKETLSIAKYLC-GFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
I+Y +RK+ +A+ L G+ +KA Y+A + ++ V ++ K +V+VATIAFGM
Sbjct: 937 IVYCLSRKDCEKVAQELSKGYKIKATHYHAGMASAERTAVQRDWQSGKYDVIVATIAFGM 996
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSE 631
GIDK +VR +IH+ P+SLE YYQE GRAGRDG + C L Y + ++ + +
Sbjct: 997 GIDKPDVRFVIHHTMPKSLEGYYQETGRAGRDGKRSGCYLFYSYRDTAAQKRFIEQSDGD 1056
Query: 632 DQTKQAYR-MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-QLCDVC-VDGPPEMKNL 688
Q K R ML ++ N S CR ++ YF E F C + CD C D + +
Sbjct: 1057 WQQKNRQRQMLRHVVQFCENQSDCRRVQILAYFNESFRAGDCHRTCDNCKTDETFQTVDF 1116
Query: 689 KEEANILMQVIAAYNEQ 705
+ A +Q++ +N++
Sbjct: 1117 SDLAKQAIQLVRLFNDR 1133
>gi|423692812|ref|ZP_17667332.1| ATP-dependent DNA helicase RecQ [Pseudomonas fluorescens SS101]
gi|388000709|gb|EIK62038.1| ATP-dependent DNA helicase RecQ [Pseudomonas fluorescens SS101]
Length = 709
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIKRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + +S IALFAIDE HCVS+WGHDFR +Y +L L E F D+P +A
Sbjct: 121 PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I++ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVERLHLQNAERF-LSSFDRPNIFYRI 209
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 110/204 (53%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +LC G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLSERRSDA-GIVYCLSRKKVDEVAAFLCEQGYPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP ++ R H + F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NETRSAHQKRFLNEEGLIMVATIAFGMGIDKSNVRFVAHMDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD + L + L L S +++ K+ + D + CR +
Sbjct: 317 GRAGRDGLPADAWMVYGLQDVVMLKQMLQSSEGDERHKRLEQHKLDAMLSLCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED E C CD C+DG
Sbjct: 377 TLLAYFDEDMP-EPCGHCDNCIDG 399
>gi|115350316|ref|YP_772155.1| ATP-dependent DNA helicase RecQ [Burkholderia ambifaria AMMD]
gi|115280304|gb|ABI85821.1| ATP-dependent DNA helicase RecQ [Burkholderia ambifaria AMMD]
Length = 615
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/229 (42%), Positives = 137/229 (59%), Gaps = 24/229 (10%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV----VVI 219
+L + FG+S+ + Q E + DCLVL TG GKSLC+QIPALL + +V+
Sbjct: 7 ILDEVFGYSAFRGQQGEIVEHVAGGGDCLVLMPTGGGKSLCYQIPALLRREAGQGAGIVV 66
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVI--RL 274
SPLI+LM DQ + LS+ GV A +L S + ++ALR G ++YV PE ++ R
Sbjct: 67 SPLIALMQDQVAALSEVGVRAAYLNSTLSGAEAAATERALREGEIDLLYVAPERLMTGRF 126
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
++ L+R I LFAIDE HCVS+WGHDFRP+Y +LSVL E F + +P +
Sbjct: 127 LELLERAR----IGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPS---------VPRI 173
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
ALTATA R++I+ L + FV +SF RPN+R+ + K ++RA
Sbjct: 174 ALTATADAITRDEIIHRLALDDARVFV-SSFDRPNIRYRIVE-KDNARA 220
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 132/267 (49%), Gaps = 26/267 (9%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVV- 567
DG T ++Y +R++ A++L GV+A Y+A + + ++R+ H E + + VV+
Sbjct: 234 DGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGM-EFEVRQKHQEMFQREEGVVMC 292
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 293 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKM 352
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D T CR L+ YFGE + + C CD C++ PP+
Sbjct: 353 IDESDADDAHKRVQTSKLDALLGLCETISCRRVRLLNYFGE--ASQPCGNCDTCLE-PPD 409
Query: 685 MKNLKEEANILM------QVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIR 738
+ EA + + Q + +N S+ + + I G + +K + R + ++ I
Sbjct: 410 SWDATREAQMALSCVFRAQRASGFNFGSSHLIE---ILRGGRTEKVLQRGHDQLSTFGIG 466
Query: 739 EQSQKYLATDLLWWRGLARIMENKGYI 765
A WR + R + GY+
Sbjct: 467 A------ALSEPEWRAIFRQLVAYGYL 487
>gi|338211691|ref|YP_004655744.1| ATP-dependent DNA helicase RecQ [Runella slithyformis DSM 19594]
gi|336305510|gb|AEI48612.1| ATP-dependent DNA helicase RecQ [Runella slithyformis DSM 19594]
Length = 715
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 125/216 (57%), Gaps = 15/216 (6%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
+ +LK++FG+ + + Q E + A +DC+VL TG GKS+C+Q+PAL+ + +VISP
Sbjct: 6 DRILKQYFGYETFRPLQAEIIDWIAAGNDCMVLMPTGGGKSVCYQVPALMKEGITLVISP 65
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPL 278
LI+LM DQ L +G+ A FL S Q ++ +E++ G ++Y+ PE +
Sbjct: 66 LIALMKDQVQALRANGIEAAFLNSTQSASEQYAIEKQCHSGELKLLYIAPEKL--FAAGS 123
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
S I LFA+DE HCVS WGHDFRP+Y +L +L+ F +P++ALTA
Sbjct: 124 LDFVRSLNINLFAVDESHCVSVWGHDFRPEYTQLHILKAAFP---------HVPMVALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TA R D+LK L + + F SF RPNL +V
Sbjct: 175 TADRVTRRDVLKQLGIPEARVFE-ASFDRPNLSLNV 209
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 94/171 (54%), Gaps = 14/171 (8%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY RK T IA+ L G+ A Y+A LP + +V +F + ++++VATIAFGMG
Sbjct: 232 IIYCLARKTTEDIAQKLRARGINARHYHAKLPPEERSKVQDDFLRDDIQIMVATIAFGMG 291
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM--------PTLLPS 627
IDK NVR I+HY P ++E++YQE GRAGRDG +D +L+ + + + LP
Sbjct: 292 IDKSNVRWIMHYNMPGNVESFYQEIGRAGRDGLKSDTMLFYSFADWIMRRDMIESSELPQ 351
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVC 678
+ Q + RM + CR +IL+ YF E + C CDVC
Sbjct: 352 HLKDIQFAKLDRM-----KQYAEADHCRRRILLSYFNEAVDRD-CGNCDVC 396
>gi|449453437|ref|XP_004144464.1| PREDICTED: mediator of RNA polymerase II transcription subunit
34-like [Cucumis sativus]
Length = 738
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 139/235 (59%), Gaps = 18/235 (7%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W+ + + + FG SS + Q+E ++A ++ D LV+ A G GKSLC+Q+PALL +
Sbjct: 74 WDSEADDVKLNIFGISSYRANQREIVNAVMSGRDVLVIMAAGGGKSLCYQLPALLYDGIA 133
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSG--QPDNKVEQKAL---RGMYSIIYVCPETV 271
+V+SPL+SL+ DQ L+ G++A L S + D K+ K L G I+YV PE V
Sbjct: 134 LVVSPLLSLIQDQVMGLAALGISASMLTSATSKEDEKLIYKNLEKGEGSMKILYVTPEKV 193
Query: 272 I---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
R + L++ + ++L AIDE HC S+WGHDFRPDY+ L +L+ F
Sbjct: 194 SKSKRFMSKLEKCYHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKTQFP-------- 245
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
+ P++ALTATAT +V+ D+++ L + K KFV ++ RPNL + V+ + S+
Sbjct: 246 -NAPVIALTATATQRVQNDLVEMLRIPKYVKFV-STVNRPNLFYMVREKSSVSKV 298
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RKE +AK L G+ A Y+A + +VH + ++L+V+V T+AFGMG
Sbjct: 318 IIYCFSRKECEQVAKELRLRGISADHYHADMDSVAREKVHMRWSNSRLQVIVGTVAFGMG 377
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K +VR +IH+ +S+E YYQE+GRAGRDG ++C+LY +P E+
Sbjct: 378 INKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYYRPGDVPRQSSMVFYEN--- 434
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGE 665
L +Y + CR + +F E
Sbjct: 435 SGLENLYGIVQYCQSRRQCRRSVFFRHFAE 464
>gi|389737283|ref|ZP_10190741.1| ATP-dependent DNA helicase RecQ [Rhodanobacter sp. 115]
gi|388436519|gb|EIL93382.1| ATP-dependent DNA helicase RecQ [Rhodanobacter sp. 115]
Length = 604
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 134/221 (60%), Gaps = 21/221 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG+SS + Q+ + HD LVL TG GKSLC+QIPALL +V+SPLI
Sbjct: 8 ILESVFGYSSFRGEQQAIVEHLAEGHDALVLMPTGGGKSLCYQIPALLRQGTGIVVSPLI 67
Query: 224 SLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ L GV A +L S + +VE++ L G +++YV PE ++ R + L
Sbjct: 68 ALMQDQVDALRAAGVAAAYLNSSLDAESQREVERQLLAGELNLLYVAPERLLTSRFLGLL 127
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+R+ ALFAIDE HCVS+WGHDFRP+YR L++L E F +P +ALTA
Sbjct: 128 ERMEP----ALFAIDEAHCVSQWGHDFRPEYRELTLLHERFP---------HVPRIALTA 174
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNL--RFSVKHS 377
TA + RE+I++ L + +F+ +SF RPN+ R +KH+
Sbjct: 175 TADPRTREEIVERLALQDARQFI-SSFDRPNIGYRVMLKHN 214
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 98/194 (50%), Gaps = 4/194 (2%)
Query: 492 RTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQL 551
R L + P +L E I+Y +RK+ A +L G++A Y+A L +
Sbjct: 208 RVMLKHNPRTQLMRFIEEHRGEAGIVYCLSRKKVDDTAAWLAEAGIEALPYHAGLDAATR 267
Query: 552 RRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD 611
R F V+VAT+AFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+
Sbjct: 268 ARHQQRFLREDGVVMVATVAFGMGIDKPDVRFVAHLDLPRSMEGYYQETGRAGRDGLPAE 327
Query: 612 CVLYANLS---SMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS 668
+ LS +M ++ S D+ K+ R + + CR ++L+ FGE F
Sbjct: 328 AWMVYGLSDVVTMSQMIAQSESGDERKRVERQKLESLLAYAEATRCRRELLLGAFGEAF- 386
Query: 669 HEKCQLCDVCVDGP 682
H C CD CV+ P
Sbjct: 387 HGPCGHCDNCVEPP 400
>gi|254230201|ref|ZP_04923594.1| ATP-dependent DNA helicase RecQ [Vibrio sp. Ex25]
gi|151937286|gb|EDN56151.1| ATP-dependent DNA helicase RecQ [Vibrio sp. Ex25]
Length = 633
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 145/261 (55%), Gaps = 20/261 (7%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
SD V +L++ FG+ + ++ Q+E + A + D LV+ TG GKSLC+QIPAL+
Sbjct: 32 SDTPVTPQRVLEEVFGYQTFRDGQQEVIEAAIEGKDSLVIMPTGGGKSLCYQIPALVRSG 91
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETV 271
+ +VISPLISLM DQ +L +GV A + S + V + G ++YV PE V
Sbjct: 92 ITLVISPLISLMKDQVDQLKANGVAAECVNSTMNREELLSVYNRMHSGQLKLVYVSPERV 151
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
L++ E+ +++ A+DE HC+S+WGHDFRP+Y L L+++F +
Sbjct: 152 --LMRDFIERLENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQHFS---------HV 200
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---K 386
P MALTATA R DIL+ L + + + L SF RPN+R+++ KH S Y +
Sbjct: 201 PFMALTATADDATRRDILERLRLHEPQVY-LGSFDRPNIRYTLVEKHKPVSQIIRYLATQ 259
Query: 387 KDFCQLIDIYTKKKKTGEKEK 407
K C +I ++KK EK
Sbjct: 260 KGSCGIIYCGSRKKVEMVTEK 280
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 136/260 (52%), Gaps = 15/260 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ + + LC ++AA Y+A + + V F + +++VVAT+AFGMG
Sbjct: 265 IIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDTEERAYVQEAFQRDDIQIVVATVAFGMG 324
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ ++ A++S + +L +
Sbjct: 325 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGP 384
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
Q + L+ + CR ++L+ YFGE + + C CD+C+D PP+ + EEA
Sbjct: 385 QKQVESHKLNAMSAFA-EAQTCRRQVLLNYFGE-YREKPCGNCDICLD-PPKHFDATEEA 441
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLW 751
+ + N QS M + G++ + + + K+ I R+ S Y
Sbjct: 442 RKALSCVYRVN-QSFGMTYVVEVLRGMQNIRVREHGHDKISTYGIGRDHSHDY------- 493
Query: 752 WRGLARIMENKGYIREGDDR 771
W + R + +KG + + R
Sbjct: 494 WVSIFRQLIHKGLLFQNITR 513
>gi|350266272|ref|YP_004877579.1| ATP-dependent DNA helicase RecQ [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|349599159|gb|AEP86947.1| ATP-dependent DNA helicase RecQ [Bacillus subtilis subsp.
spizizenii TU-B-10]
Length = 591
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 134/248 (54%), Gaps = 28/248 (11%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEAL-SAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
+ SLL +FG+ L++ Q+EA+ S A + + TG GKS+C+QIPAL+ +V
Sbjct: 4 RAQSLLAHYFGYEKLRSGQEEAIRSVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIV 63
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK--ALR-GMYSIIYVCPE--TVIR 273
ISPLISLM DQ L + G+ A ++ S Q + ++ ++ L+ G Y + Y+ PE T
Sbjct: 64 ISPLISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTE 123
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
I+ LQ + + L AIDE HC+S+WGHDFRP YR + +L + L +
Sbjct: 124 FIRILQDI----DVPLVAIDEAHCISQWGHDFRPSYRNIEIL--------FRELHDKPVI 171
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLI 393
MALTATAT +V EDI K LH+ K V T F R NL F V + R I
Sbjct: 172 MALTATATPEVHEDICKQLHIQKENT-VHTGFSRDNLTFKVAKGENKDR---------FI 221
Query: 394 DIYTKKKK 401
D Y + K
Sbjct: 222 DEYVQNNK 229
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 99/193 (51%), Gaps = 6/193 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y TRKE I + L + A Y+ L + F ++L+V+VAT AFGMG
Sbjct: 234 IVYTATRKEADRIYERLKRNQISAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMG 293
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
IDK N+R ++H P+ +E+YYQEAGRAGRDG ++CVL ++ L+ E+
Sbjct: 294 IDKSNIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLFSPQDIMVQRFLIEQSEHEE 353
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ KQ + L Y +T C + ++ YFGE + C C C D ++ EA
Sbjct: 354 KQKQDLKKLRQMVDY-CHTEDCLQRFILMYFGET-EPDACGQCGNCTDTRTS-HDVTREA 410
Query: 693 NILMQVIAAYNEQ 705
+++ I E+
Sbjct: 411 QMVLSCIIRMKER 423
>gi|170696806|ref|ZP_02887912.1| ATP-dependent DNA helicase RecQ [Burkholderia graminis C4D1M]
gi|170138284|gb|EDT06506.1| ATP-dependent DNA helicase RecQ [Burkholderia graminis C4D1M]
Length = 644
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 131/222 (59%), Gaps = 27/222 (12%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-------TGKVV 216
+L + FG+ + + Q E + DCLVL TG GKSLC+QIP+L+ TG
Sbjct: 36 ILNEVFGYPAFRGQQGEIVEHVAGGGDCLVLMPTGGGKSLCYQIPSLVRREGGFGTG--- 92
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVIR 273
+V+SPLI+LM DQ + L++ GV A +L S + ++ALR G ++YV PE R
Sbjct: 93 IVVSPLIALMQDQVAALTEVGVRAAYLNSTLSSAEAMATERALRDGEIDLLYVAPE---R 149
Query: 274 LIKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
L+ P Q L E I LFAIDE HCVS+WGHDFRP+Y +LSVL E F ++P
Sbjct: 150 LMTPRFQELLERTRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------NVP 200
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+ALTATA R++I+ L + FV +SF RPN+R+ +
Sbjct: 201 RIALTATADAITRDEIIHRLALDDARIFV-SSFDRPNIRYRI 241
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 102/195 (52%), Gaps = 11/195 (5%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVV 567
DG T ++Y +R++ A++L G++A Y+A + + + R+ H E F + V+
Sbjct: 263 DGTTDAGVVYCLSRRKVEETAEWLKEKGMRALPYHAGM-EFETRQKHQEMFQREEGIVMC 321
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 322 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKM 381
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D + CR L+ YFGE S + C CD C++ PP
Sbjct: 382 IDESDADDAHKRVQTGKLDALLGLCEAATCRRVRLLAYFGE--SSKPCGNCDNCLE-PPA 438
Query: 685 MKNLKEEANILMQVI 699
+ EA + + +
Sbjct: 439 TWDATREAQMALSCV 453
>gi|403515110|ref|YP_006655930.1| ATP-dependent DNA helicase RecQ [Lactobacillus helveticus R0052]
gi|403080548|gb|AFR22126.1| ATP-dependent DNA helicase RecQ [Lactobacillus helveticus R0052]
Length = 590
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 135/223 (60%), Gaps = 16/223 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK+ FG+SS + QK+ + L + L + TG+GKSLC+Q+PAL+ V +VISPLI
Sbjct: 6 ILKQTFGYSSFRPGQKKVIDLILNRKNVLAVMPTGAGKSLCYQVPALMNEGVTLVISPLI 65
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ L ++G+ A L S P N + ++A G +IY+ PE RL R
Sbjct: 66 SLMKDQIDSLKQNGINAAALNSTTPQEEVNPILRQAYEGKIKLIYITPE---RLAMDYFR 122
Query: 281 LAES-RGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ + L A+DE HC+S+WGHDFRP YR++ G N+LKS ++ALTAT
Sbjct: 123 YQLNFLDVDLVAVDEAHCISQWGHDFRPAYRQIFE-----GINSLKS---KPTILALTAT 174
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
AT V++DI + L++ + F++TSF RPN+ F V +S +++
Sbjct: 175 ATPAVQDDIGQQLNIPQ-ENFIVTSFARPNISFKVVNSPQNTQ 216
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 8/192 (4%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
D IIY TRK+ S+ YL G+ AY+ + + ++ F ++ +V+VAT A
Sbjct: 228 DDAGIIYTNTRKKVESLTDYLAKKGISVGAYHGGMDAKERSQIQEAFQFDEFQVIVATNA 287
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSR 628
FGMGIDK NVR ++H +++E+YYQEAGRAGRDG ++ V+ +L +
Sbjct: 288 FGMGIDKSNVRFVVHASSARNIESYYQEAGRAGRDGEESEAVMIYHPGDLHQYRYFIEES 347
Query: 629 RSEDQTKQ-AYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKN 687
++ + K+ Y+ L Y +NT C + +V YFG+D C C C++ ++KN
Sbjct: 348 DADQKYKELQYQKLQAITDY-VNTGECLQQFIVRYFGQDCP--PCGKCSNCLN-QGDLKN 403
Query: 688 LKEEANILMQVI 699
+ +A ++ ++
Sbjct: 404 ITTDAQKVIALV 415
>gi|172059335|ref|YP_001806987.1| ATP-dependent DNA helicase RecQ [Burkholderia ambifaria MC40-6]
gi|171991852|gb|ACB62771.1| ATP-dependent DNA helicase RecQ [Burkholderia ambifaria MC40-6]
Length = 615
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/229 (42%), Positives = 137/229 (59%), Gaps = 24/229 (10%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV----VVI 219
+L + FG+S+ + Q E + DCLVL TG GKSLC+QIPALL + +V+
Sbjct: 7 ILDEVFGYSAFRGQQGEIVEHVAGGGDCLVLMPTGGGKSLCYQIPALLRREAGQGAGIVV 66
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVI--RL 274
SPLI+LM DQ + LS+ GV A +L S + ++ALR G ++YV PE ++ R
Sbjct: 67 SPLIALMQDQVAALSEVGVRAAYLNSTLSGAEAAATERALREGEIDLLYVAPERLMTGRF 126
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
++ L+R I LFAIDE HCVS+WGHDFRP+Y +LSVL E F + +P +
Sbjct: 127 LELLERAR----IGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPS---------VPRI 173
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
ALTATA R++I+ L + FV +SF RPN+R+ + K ++RA
Sbjct: 174 ALTATADAITRDEIIHRLALDDARVFV-SSFDRPNIRYRIVE-KDNARA 220
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 105/195 (53%), Gaps = 11/195 (5%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVV- 567
DG T ++Y +R++ A++L GV+A Y+A + + ++R+ H E + + VV+
Sbjct: 234 DGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGM-EFEVRQKHQEMFQREEGVVMC 292
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 293 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKM 352
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D T CR L+ YFGE + + C CD C++ PP+
Sbjct: 353 IDESDADDAHKRVQTSKLDALLGLCETISCRRVRLLNYFGE--ASQPCGNCDTCLE-PPD 409
Query: 685 MKNLKEEANILMQVI 699
+ EA + + +
Sbjct: 410 SWDATREAQMALSCV 424
>gi|325283330|ref|YP_004255871.1| ATP-dependent DNA helicase RecQ [Deinococcus proteolyticus MRP]
gi|324315139|gb|ADY26254.1| ATP-dependent DNA helicase RecQ [Deinococcus proteolyticus MRP]
Length = 614
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 129/226 (57%), Gaps = 15/226 (6%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ LL+ +G+ S + Q E ++ A D LVL TG GKSLC+Q+P+LL V VV+
Sbjct: 15 RAYDLLRDLWGYGSFRWRQGEIVAQLAAGGDALVLMPTGGGKSLCYQLPSLLRPGVGVVV 74
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVE--QKALR-GMYSIIYVCPETVIRLIK 276
SPLI+LM DQ L + G+ A FL S V + ALR G ++YV PE + L++
Sbjct: 75 SPLIALMQDQVDTLRQLGIRAAFLNSSLSAEGVREVEAALRAGELDLLYVAPERL--LME 132
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
RL +ALFAIDE HCVS+WGHDFRP+Y+ L VL E F +P +AL
Sbjct: 133 GTLRLLAGVEVALFAIDEAHCVSQWGHDFRPEYQGLGVLAERFPG---------VPRIAL 183
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
TATA + R D++ L + +FV SF RPN+++ + + R
Sbjct: 184 TATADDRTRADMVSVLGLEGAPQFV-ASFDRPNIQYRIAGKDNAKR 228
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 120/264 (45%), Gaps = 26/264 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK A++L GV A AY+A L +Q + F + VVVAT+AFGMG
Sbjct: 244 IVYCLSRKSVEDTAQFLSDSGVPALAYHAGLDHAQRQEAQARFLREEGLVVVATVAFGMG 303
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSED 632
IDK +VR + H P+S+E YYQE GRAGRDG + + L + L L + +
Sbjct: 304 IDKPDVRFVAHLDLPKSMEGYYQETGRAGRDGEPSTAWMVYGLGDVVNLRRMLAGSAAPE 363
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
++ D T+ CR + L+ YFGE + C CD C+ PP+++ + EA
Sbjct: 364 WVRRIEGAKLDALLAYCETTACRRESLLAYFGEAY-QGPCGNCDNCIS-PPQVREMTREA 421
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLAT----- 747
+ + + + D + L K+R+ L T
Sbjct: 422 QMALSAAVRTGNRYGAAHLTDVL--------------LGRDTDKVRQWGHHTLPTFGVGA 467
Query: 748 --DLLWWRGLARIMENKGYIREGD 769
D WRG+ R M + GY+ G+
Sbjct: 468 EHDERTWRGVLRQMVSLGYLEAGE 491
>gi|113971918|ref|YP_735711.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-4]
gi|113886602|gb|ABI40654.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-4]
Length = 607
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 132/215 (61%), Gaps = 20/215 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L + FG+ ++ Q+E + + DCLV+ TG GKSLC+Q+PALL + +V+SPLIS
Sbjct: 17 LAQVFGYRDFRDGQREVIERVCSGEDCLVIMPTGGGKSLCYQLPALLMPGITIVVSPLIS 76
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKP--LQ 279
LM DQ L + GV A +L S QP + V ++ RG ++YV PE RL+ ++
Sbjct: 77 LMKDQVDSLLQTGVNAAYLNSSQPREQSVEVLRQLHRGELKLLYVSPE---RLLTADFIE 133
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
R+ S +++FAIDE HC+S+WGHDFRP+Y L L++ F +P+MALTAT
Sbjct: 134 RM-RSLPLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFP---------HVPMMALTAT 183
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
A R++I + L ++ +L+SF RPN+R++V
Sbjct: 184 ADQATRQNICERLGINPFK--LLSSFDRPNIRYTV 216
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 16/222 (7%)
Query: 489 SFERTDLLNKPAERLS--------MLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAA 540
SF+R ++ AE+L+ +LQ+ G I+Y +R+ +A+ L G A
Sbjct: 206 SFDRPNIRYTVAEKLNAANQLRQFLLQQNGSSG--IVYCSSRRRVDEVAERLTLQGFHAK 263
Query: 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
AY+A + + V F ++++++VVAT+AFGMGI+K NVR ++HY P+S+EAYYQE
Sbjct: 264 AYHAGMTPQERGEVQDSFLKDQIDIVVATVAFGMGINKSNVRFVVHYDIPKSIEAYYQET 323
Query: 601 GRAGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG A+ + A++ + L+ Q + + L+ + CR +
Sbjct: 324 GRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQQQVDFHKLNTMAAFA-EAQTCRRQ 382
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
+L+ YF E + E C CD+C+D PP+ N E+A ++ I
Sbjct: 383 VLLHYFDES-ALEPCGNCDICLD-PPKRYNGTEDAQKVLSCI 422
>gi|336171234|ref|YP_004578372.1| RecQ family ATP-dependent DNA helicase [Lacinutrix sp. 5H-3-7-4]
gi|334725806|gb|AEG99943.1| ATP-dependent DNA helicase, RecQ family [Lacinutrix sp. 5H-3-7-4]
Length = 730
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 133/227 (58%), Gaps = 27/227 (11%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
++ + LKKHFG S K Q++ + + L + V+ TG GKSLC+Q+PAL+ +V+
Sbjct: 4 EIQAALKKHFGFSEFKGLQEKVIESILDKKNTFVIMPTGGGKSLCYQLPALMQEGTAIVV 63
Query: 220 SPLISLMHDQCSKL----SKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPET 270
SPLI+LM +Q + +HG+ A L S NK E K ++ G+ ++YV PE+
Sbjct: 64 SPLIALMKNQVDAIRGVSDEHGI-AHVLNSSL--NKTEVKQVKEDITNGITKLLYVAPES 120
Query: 271 VIRLIKPLQRLAESRG--IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
+ + + + RG I+ A+DE HC+S+WGHDFRP+YR L + + G N
Sbjct: 121 LTK----EENVEFLRGVKISFMAVDEAHCISEWGHDFRPEYRNLRTIIQRIGDN------ 170
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
IP++ LTATAT +V+EDILK+L M+ F SF RPNL + V+
Sbjct: 171 --IPIIGLTATATPKVQEDILKNLRMTDAKTF-KASFNRPNLYYEVR 214
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 107/199 (53%), Gaps = 5/199 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK +A+ L G+KA Y+A L + F ++VVVATIAFGMG
Sbjct: 237 IVYCLSRKRVEELAQVLQVNGIKAVPYHAGLDAKTRAKHQDMFLMEDIDVVVATIAFGMG 296
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--LPSRRSEDQ 633
IDK +VR +IH+ P+S+E+YYQE GRAGRDG C+ Y + + L S + +
Sbjct: 297 IDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMSGKPVAE 356
Query: 634 TKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDV--CVDGPPEMKNLKEE 691
+ + +L + + TS R K ++ YFGE+F E D+ + P + K+E
Sbjct: 357 QEIGHALLQEVVAF-CETSMSRRKFILHYFGEEFDTETGDGGDMDDNMRHPKKQSEAKDE 415
Query: 692 ANILMQVIAAYNEQSNSMD 710
A ++++ + NE+ S D
Sbjct: 416 AKLVIETVKLTNEKYKSKD 434
>gi|385207800|ref|ZP_10034668.1| ATP-dependent DNA helicase RecQ [Burkholderia sp. Ch1-1]
gi|385180138|gb|EIF29414.1| ATP-dependent DNA helicase RecQ [Burkholderia sp. Ch1-1]
Length = 615
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 130/219 (59%), Gaps = 21/219 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVI 219
+L + FG+ + + Q E + DCLVL TG GKSLC+QIP+L+ + +V+
Sbjct: 7 ILNEVFGYPAFRGQQGEIVEHVAGGGDCLVLMPTGGGKSLCYQIPSLVRRERGFGTGIVV 66
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L++ GV A +L S + ++ALR G ++YV PE RL+
Sbjct: 67 SPLIALMQDQVAALTEVGVRAAYLNSTLSSAEAMATERALREGEIDLLYVAPE---RLMT 123
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P Q L E I LFAIDE HCVS+WGHDFRP+Y +LSVL E F ++P +A
Sbjct: 124 PRFQELLERTRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------NVPRIA 174
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA R++I+ L + FV +SF RPN+R+ +
Sbjct: 175 LTATADAITRDEIIHRLALDDARIFV-SSFDRPNIRYRI 212
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 104/195 (53%), Gaps = 11/195 (5%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVV 567
DG T ++Y +R++ A++L G++A Y+A + + ++R+ H E F + V+
Sbjct: 234 DGTTDAGVVYCLSRRKVEETAEWLKEKGMRALPYHAGM-EFEIRQKHQEMFQREEGIVMC 292
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 293 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKM 352
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D + CR L+ YFGE S + C CD C++ PP+
Sbjct: 353 IDESDADDAHKRVQTGKLDALLGLCEAATCRRVRLLAYFGE--SSKPCGNCDNCLE-PPD 409
Query: 685 MKNLKEEANILMQVI 699
+ EA + + +
Sbjct: 410 TWDATREAQMALSCV 424
>gi|395645903|ref|ZP_10433763.1| ATP-dependent DNA helicase RecQ [Methanofollis liminatans DSM 4140]
gi|395442643|gb|EJG07400.1| ATP-dependent DNA helicase RecQ [Methanofollis liminatans DSM 4140]
Length = 724
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 135/220 (61%), Gaps = 21/220 (9%)
Query: 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 220
+ LL++++G++S +QKE +++ L HD L + ATG GKSLC+Q+PAL+ G + +VIS
Sbjct: 4 ITELLQRYWGYTSFLPYQKEIITSVLDGHDTLAVMATGGGKSLCYQLPALVLGGLTIVIS 63
Query: 221 PLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS----IIYVCPETVIR--L 274
PLI+LM +Q L++ G+ A S D + + RG+ + ++++ PE ++
Sbjct: 64 PLIALMKNQVDDLNERGIRAVAYNSTL-DYRERVEVERGLQNNTVRMLFISPEKCMQPSF 122
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ + R + L AIDE HC+S+WGH+FRP+YR+LS LRE+F +P++
Sbjct: 123 LSFINRFP----VRLIAIDEAHCISEWGHNFRPEYRQLSALREHFPP---------VPIV 169
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA VREDI L +S +++ SF RPNL + V
Sbjct: 170 ALTATAIPAVREDICTQLQLSDVREYI-GSFNRPNLSYRV 208
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 120/207 (57%), Gaps = 15/207 (7%)
Query: 484 RDTDRSFERTDL------LNKPAERL--SMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF 535
R+ SF R +L NKP E + + Q P + G IIY +RK T +A+ L
Sbjct: 193 REYIGSFNRPNLSYRVVPKNKPVEFILDYIGQHPNDSG--IIYCLSRKATEDLAETLVEH 250
Query: 536 GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEA 595
G A+AY+A L ++V F ++ + ++ AT+AFGMGIDK +VR +IH+ P+S+EA
Sbjct: 251 GHMASAYHAGLLPEVRKKVQEAFIKDDISIICATVAFGMGIDKPDVRYVIHHDLPKSVEA 310
Query: 596 YYQEAGRAGRDGHLADCVLY---ANLSSMPTLLP-SRRSEDQTKQAYRMLSDCFRYGMNT 651
YYQE+GRAGRDG +C+L +L+ + LL + E+Q+ A++ + + Y T
Sbjct: 311 YYQESGRAGRDGQPGECILLYSRGDLAKVRYLLEHDDQDEEQSGIAFKKMQEVVDY-CET 369
Query: 652 SCCRAKILVEYFGEDFSHEKCQLCDVC 678
+ CR K L+ YFGE++ E C CD C
Sbjct: 370 NSCRRKYLLAYFGEEYPGETCDACDNC 396
>gi|443634643|ref|ZP_21118816.1| ATP-dependent DNA helicase RecQ [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443345450|gb|ELS59514.1| ATP-dependent DNA helicase RecQ [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 591
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 134/249 (53%), Gaps = 30/249 (12%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEAL-SAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
+ SLL +FG+ L+ Q+EA+ S + + + TG GKS+C+QIPAL+ +V
Sbjct: 4 RAQSLLAHYFGYEKLRIGQEEAIRSVTEERQNTVCIMPTGGGKSICYQIPALMFEGTTIV 63
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGM----YSIIYVCPE--TVI 272
ISPLISLM DQ L + G+ A ++ S Q + ++ ++ L G+ Y + Y+ PE T
Sbjct: 64 ISPLISLMKDQVDALEEAGINAAYINSTQSNQEIYER-LNGLKEAAYKLFYITPERLTST 122
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
I+ LQ S + L AIDE HC+S+WGHDFRP YR + +L + L
Sbjct: 123 EFIRILQ----SIDVPLVAIDEAHCISQWGHDFRPSYRNIEIL--------FRELHDKPV 170
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQL 392
+MALTATAT +V EDI K LH+ K V T F R NL F V + R
Sbjct: 171 IMALTATATPEVHEDICKQLHIQKENT-VYTGFSRDNLTFKVAKGENKDR---------F 220
Query: 393 IDIYTKKKK 401
ID Y +K K
Sbjct: 221 IDEYVQKNK 229
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 99/193 (51%), Gaps = 6/193 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y TRKE I + L + A Y+ L + F ++L+V+VAT AFGMG
Sbjct: 234 IVYTATRKEADRIYERLKRNQISAGRYHGGLADDVRKDQQERFLNDELQVMVATSAFGMG 293
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
IDK N+R ++H P+ +E+YYQEAGRAGRDG ++CVL ++ L+ E+
Sbjct: 294 IDKSNIRFVLHAQIPKDMESYYQEAGRAGRDGLDSECVLLFSPQDIMVQRFLIEQSEHEE 353
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ KQ + L Y +T C + ++ YFGE + C C C D ++ EA
Sbjct: 354 KQKQDLKKLRQMVDY-CHTEDCLQRFILMYFGEK-EPDACGQCGNCTDTRT-AHDVTREA 410
Query: 693 NILMQVIAAYNEQ 705
+++ I E+
Sbjct: 411 QMVLSCIIRMKER 423
>gi|395242974|ref|ZP_10419962.1| ATP-dependent DNA helicase RecQ [Lactobacillus hominis CRBIP
24.179]
gi|394484794|emb|CCI80970.1| ATP-dependent DNA helicase RecQ [Lactobacillus hominis CRBIP
24.179]
Length = 588
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 135/224 (60%), Gaps = 16/224 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK+ FG+S+ + Q++ +S L + L + TG GKS+C+QIPAL+ V +V+SPLI
Sbjct: 7 ILKQVFGYSNFRPGQEKVISLVLNKQNTLAVMPTGGGKSICYQIPALIQPGVTLVVSPLI 66
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ L ++G+ A L S P N + ++A +G ++YV PE RL R
Sbjct: 67 SLMKDQIDSLRQNGIVAAALNSSTPQEEVNPILRQAYQGKIKLLYVTPE---RLAMDYFR 123
Query: 281 LAES-RGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ I L A+DE HC+S+WGHDFRP YR+L + +K LK ++ALTAT
Sbjct: 124 YQLNFLDIDLVAVDEAHCISQWGHDFRPAYRQL--------LDGIKVLKSKPSILALTAT 175
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
AT +V++DI + L + FV+TSF R NL+FSV +S ++ A
Sbjct: 176 ATPRVQKDIAEQLDIPT-QNFVITSFARSNLKFSVLNSIKNTNA 218
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 96/169 (56%), Gaps = 7/169 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY TRK+ I +YL + +K AAY+A L S + +F N+L+V+VAT AFGMG
Sbjct: 233 IIYSNTRKKVEEINEYLKRYDIKLAAYHAGLSNSLREEIQDDFQFNRLQVIVATNAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT----LLPSRRSE 631
IDK NVR +IH ++E+YYQEAGRAGRDG ++ +L + + + S S+
Sbjct: 293 IDKSNVRFVIHANSASNIESYYQEAGRAGRDGEESEVILIYHPGDVRQYRWFIDESDASD 352
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVD 680
+ K Y L Y NT C + +V YFG+D + CQ C C++
Sbjct: 353 EYKKLQYEKLQKVTNYA-NTDQCLQQFIVRYFGQDC--DACQKCSNCLN 398
>gi|332291549|ref|YP_004430158.1| ATP-dependent DNA helicase RecQ [Krokinobacter sp. 4H-3-7-5]
gi|332169635|gb|AEE18890.1| ATP-dependent DNA helicase RecQ [Krokinobacter sp. 4H-3-7-5]
Length = 696
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 124/219 (56%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+++SLLK HFG+ + + Q+E + + D LV+ TG GKS+CFQ+PAL V +VI
Sbjct: 6 ELHSLLKTHFGYDNFRPNQQEIIESVCRGDDALVIMPTGGGKSMCFQLPALALDGVALVI 65
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ---KALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ L +G+ A + S QP + +Q G +IYV PE++ L
Sbjct: 66 SPLIALMKDQVDALRANGIRAAYYNSTQPLEETQQVLSDLQSGAIDLIYVAPESLQMLDG 125
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
L + I+L AIDE HC+S WGHDFRP Y +L L+ F PL+AL
Sbjct: 126 AL----NAATISLIAIDEAHCISSWGHDFRPAYTQLGYLKRRFP---------QAPLIAL 172
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
TATA ++DI L +S K+V +SF RPNL V+
Sbjct: 173 TATADRSTQDDIADQLGISNAKKYV-SSFDRPNLYLDVR 210
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 116/205 (56%), Gaps = 17/205 (8%)
Query: 489 SFERTDLL--NKPAER-----LSMLQE-PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAA 540
SF+R +L +P ++ L L+E P E G IIY +RK T S+A L G KAA
Sbjct: 199 SFDRPNLYLDVRPGQKRNDQILDFLEEHPGESG--IIYCLSRKSTESLAAKLQANGYKAA 256
Query: 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
AY+A + Q +V +F + ++ ATIAFGMGIDK NVR +IHY P++LE YYQE
Sbjct: 257 AYHAGMHAEQRSKVQEDFINDTTPIICATIAFGMGIDKSNVRWVIHYNMPKNLEGYYQEI 316
Query: 601 GRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQA-YRMLS-DCFRYGMNTSCCRAKI 658
GRAGRDG A +L+ + + L R+ D K A Y+M D + CR K+
Sbjct: 317 GRAGRDGLPAHTLLFYSYADTLQL---RQFIDGAKNADYQMAKLDRMQQYAEALSCRRKV 373
Query: 659 LVEYFGEDFSHEKCQLCDVCVDGPP 683
L+ YFGE F E C CD+C + PP
Sbjct: 374 LINYFGE-FLSEDCGNCDIC-NSPP 396
>gi|114045876|ref|YP_736426.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-7]
gi|113887318|gb|ABI41369.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-7]
Length = 607
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 132/215 (61%), Gaps = 20/215 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L + FG+ ++ Q+E + + DCLV+ TG GKSLC+Q+PALL + +V+SPLIS
Sbjct: 17 LAQVFGYRDFRDGQREVIERVCSGEDCLVIMPTGGGKSLCYQLPALLMPGITIVVSPLIS 76
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKP--LQ 279
LM DQ L + GV A +L S QP + V ++ RG ++YV PE RL+ ++
Sbjct: 77 LMKDQVDSLLQTGVNAAYLNSSQPREQSLEVLRQLHRGELKLLYVSPE---RLLTADFIE 133
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
R+ S +++FAIDE HC+S+WGHDFRP+Y L L++ F +P+MALTAT
Sbjct: 134 RM-RSLPLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPL---------VPMMALTAT 183
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
A R++I + L ++ +L+SF RPN+R++V
Sbjct: 184 ADQATRQNICERLGINPFK--LLSSFDRPNIRYTV 216
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 16/222 (7%)
Query: 489 SFERTDLLNKPAERLS--------MLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAA 540
SF+R ++ AE+L+ +LQ+ G I+Y +R+ +A+ L G A
Sbjct: 206 SFDRPNIRYTVAEKLNAANQLRQFLLQQNGSSG--IVYCSSRRRVDEVAERLTLQGFHAK 263
Query: 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
AY+A + + V F ++++++VVAT+AFGMGI+K NVR ++HY P+S+EAYYQE
Sbjct: 264 AYHAGMTPQERGEVQDSFLKDQIDIVVATVAFGMGINKSNVRFVVHYDIPKSIEAYYQET 323
Query: 601 GRAGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG A+ + A++ + L+ Q + + L+ + CR +
Sbjct: 324 GRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQQQVDFHKLNTMAAFA-EAQTCRRQ 382
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
+L+ YF E + E C CD+C+D PP+ N E+A ++ I
Sbjct: 383 VLLHYFDES-ALEPCGNCDICLD-PPKRYNGTEDAQKVLSCI 422
>gi|403732092|ref|ZP_10949602.1| ATP-dependent DNA helicase RecQ [Gordonia rhizosphera NBRC 16068]
gi|403201920|dbj|GAB93933.1| ATP-dependent DNA helicase RecQ [Gordonia rhizosphera NBRC 16068]
Length = 608
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/251 (41%), Positives = 140/251 (55%), Gaps = 24/251 (9%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
WEV L+ FG+ S + Q++ ++ + D +VL TG GKSLC+Q+PAL+
Sbjct: 5 WEV-----LRSTFGYESFRGDQEQIVAHVVGGGDAVVLMPTGGGKSLCYQVPALVREGCG 59
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQ-PDNKVE-QKALR-GMYSIIYVCPETVIR 273
VV+SPLI+LM DQ + L GV A FL S Q P+ + E + A R G ++YV PE R
Sbjct: 60 VVVSPLIALMADQVAALRDLGVRAAFLNSTQMPEERAEVESAFRAGNLDLLYVAPE---R 116
Query: 274 LIKPLQRLAESRG-IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
L R S+G IALFAIDE HCVS+WGHDFRPDY L +L L D+P
Sbjct: 117 LNTAGTRNLLSQGKIALFAIDEAHCVSQWGHDFRPDYLAL---------GDLAELWPDVP 167
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQL 392
+ALTATAT + ++I LH+ + FV F RPN+ + + +KT R DF +
Sbjct: 168 RIALTATATQRTHDEITDRLHLQRARHFV-ADFDRPNITYRIV-TKTDPRRQL-LDFIRS 224
Query: 393 IDIYTKKKKTG 403
+ + TG
Sbjct: 225 EGVVEGRPATG 235
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 94/174 (54%), Gaps = 13/174 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
I+Y +RK + A++L G+ A Y+A L + +LR+V E F VVVATIAFGM
Sbjct: 236 IVYALSRKSVEATAEFLVANGIDAMPYHAGLDR-RLRQVTLERFLRADGVVVVATIAFGM 294
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT 634
GIDK +VR + H P+S+E YYQE GRAGRDG + + L+ ++ RR DQ+
Sbjct: 295 GIDKPDVRFVAHIDLPKSVEGYYQETGRAGRDGLPSAAWMTYGLAD---VMQQRRLIDQS 351
Query: 635 --KQAYRMLSDCFRYGMNTSC----CRAKILVEYFGEDFSHEKCQLCDVCVDGP 682
+R + M C CR L+ YFG++ + C CD C+D P
Sbjct: 352 DGDAQHRRVQQQHLDAMLALCETVDCRRVQLLRYFGQEAA--PCGNCDTCLDPP 403
>gi|295134369|ref|YP_003585045.1| RecQ-like DEAD box helicase [Zunongwangia profunda SM-A87]
gi|294982384|gb|ADF52849.1| RecQ-like DEAD box helicase family protein [Zunongwangia profunda
SM-A87]
Length = 633
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 131/219 (59%), Gaps = 17/219 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L K++GH + + Q +++ L + L L TG GKS+CFQ+PALL + +V+SPLI
Sbjct: 7 ILNKYWGHKAFRPLQWPIIASVLEGENVLALLPTGGGKSICFQVPALLRSGICIVVSPLI 66
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETV-IRLIKPLQ 279
+LM DQ S L G+ A L G N +++K + G Y +Y+ PE + + L++
Sbjct: 67 ALMEDQVSNLQAKGIKAMSLTGGISFNDLDKKLDNCIYGDYKFLYLSPERLQMELVQERI 126
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
RL + L A+DE HC+S+WGHDFRP YR +++ E LK ++PL+ALTAT
Sbjct: 127 RLM---NVNLIAVDEAHCISQWGHDFRPAYRNINIFNE---------LKPEVPLIALTAT 174
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
AT QV EDI + L + K SF+RPN+ ++V +++
Sbjct: 175 ATPQVIEDIKEQLQLP-DLKLHKKSFYRPNIAYNVVYAE 212
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 82/139 (58%), Gaps = 6/139 (4%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIYV +R T IA YL G KA A++ + + ++ ++ +NK ++VAT AFGMG
Sbjct: 230 IIYVRSRNATTEIAGYLQSQGYKAEAFHGGMKQVAKKKKLEDWLQNKFRIMVATTAFGMG 289
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL----LPSRRSE 631
IDK +VR +IH P++LE+Y+QEAGRAGRD A+ + N S +P L L S
Sbjct: 290 IDKPDVRHVIHLNLPENLESYFQEAGRAGRDDKYAEATVITNKSDIPVLENQFLARLPSI 349
Query: 632 DQTKQAYRMLSDCFR--YG 648
+ K+ Y+ + FR YG
Sbjct: 350 PEIKEVYKKVLAYFRIAYG 368
>gi|423096663|ref|ZP_17084459.1| ATP-dependent DNA helicase RecQ [Pseudomonas fluorescens Q2-87]
gi|397886178|gb|EJL02661.1| ATP-dependent DNA helicase RecQ [Pseudomonas fluorescens Q2-87]
Length = 708
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIKRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + +S IALFAIDE HCVS+WGHDFR +Y +L L E F D+P +A
Sbjct: 121 PRMLAFLQSLDIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I++ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVERLHLQDAERF-LSSFDRPNIFYRI 209
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 110/204 (53%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +LC G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLAERRSDA-GIVYCLSRKKVDEVAAFLCEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP + LR H + F + ++VAT+AFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NDLRAYHQKRFLNEEGLIMVATVAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 317 GRAGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED + C CD CVDG
Sbjct: 377 TLLAYFDEDMP-QPCGHCDNCVDG 399
>gi|91228026|ref|ZP_01262111.1| ATP-dependent DNA helicase RecQ [Vibrio alginolyticus 12G01]
gi|91188255|gb|EAS74554.1| ATP-dependent DNA helicase RecQ [Vibrio alginolyticus 12G01]
Length = 611
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 142/261 (54%), Gaps = 20/261 (7%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
SD V +L+ FG+ ++ Q+ + A + D LV+ TG GKSLC+QIPAL+
Sbjct: 10 SDSPVTPQRVLEGVFGYQEFRDGQQLVIDAAIEGRDSLVILPTGGGKSLCYQIPALVRSG 69
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETV 271
+ +VISPLISLM DQ +L +GV A + S P + V + G ++YV PE V
Sbjct: 70 ITLVISPLISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLKLVYVSPERV 129
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
L++ E+ +++ A+DE HC+S+WGHDFRP+Y L L++ F +
Sbjct: 130 --LMRDFIERLENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQQFS---------HV 178
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---K 386
P MALTATA R DIL+ L ++ + L SF RPN+R+++ KH S Y +
Sbjct: 179 PFMALTATADDATRRDILERLQLNNPEVY-LGSFDRPNIRYNLVEKHKPVSQIVRYLETQ 237
Query: 387 KDFCQLIDIYTKKKKTGEKEK 407
K C +I ++KK EK
Sbjct: 238 KGNCGIIYCCSRKKVEMVTEK 258
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 157/314 (50%), Gaps = 28/314 (8%)
Query: 458 EFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLL--NKPAERLSMLQEPLEDGLT 515
+ LE +++ +V G F DR R +L+ +KP ++ E +
Sbjct: 194 DILERLQLNNPEVYLGSF-----------DRPNIRYNLVEKHKPVSQIVRYLETQKGNCG 242
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ + + LC ++AA Y+A + + V F + +++VVAT+AFGMG
Sbjct: 243 IIYCCSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMG 302
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ ++ A++S + +L +
Sbjct: 303 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGP 362
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
Q + L+ + CR ++L+ YFGE + + C CD+C+D PP+ + EEA
Sbjct: 363 QKQVETHKLNAMSAFA-EAQTCRRQVLLNYFGE-YREKPCGNCDICLD-PPKHFDATEEA 419
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLW 751
+ + N QS M + G++ + + + K+ I R+ S Y
Sbjct: 420 RKALSCVYRVN-QSFGMGYVVEVLRGMQNIRVRENGHDKISTYAIGRDHSHDY------- 471
Query: 752 WRGLARIMENKGYI 765
W + R + +KG +
Sbjct: 472 WVSIFRQLIHKGLL 485
>gi|189527306|ref|XP_701357.3| PREDICTED: Bloom syndrome protein homolog, partial [Danio rerio]
Length = 1261
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 126/219 (57%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + Q EA++A L D VL TG GKSLC+Q+PA ++ V VVISPL
Sbjct: 669 IFHKKFGLHQFRFNQLEAINASLLGEDTFVLMPTGGGKSLCYQLPACVSAGVTVVISPLR 728
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A L + D++ + ++ ++Y PE V R+I
Sbjct: 729 SLIVDQVQKLTTLDICATSLSGDKKDSEAARIYMQLSRKDPAIKLLYATPEKVCASGRMI 788
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
LQ L E +A IDE HCVS+WGHDFRPDY+RL LR F ++P+MA
Sbjct: 789 SALQNLYERGLLARLVIDEAHCVSQWGHDFRPDYKRLHELRRMFP---------NVPIMA 839
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATAT +V++DIL L M++ F + SF R NL++SV
Sbjct: 840 LTATATPRVQKDILNQLAMTRPQVFTM-SFNRNNLKYSV 877
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 100/176 (56%), Gaps = 12/176 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVVATIAFGM 574
I+Y +R + ++A L G+ A AY+A L S V ++ +++ +V+ ATIAFGM
Sbjct: 903 IVYCLSRNDCDTLADSLQRAGIAALAYHAGLSDSDREYVQNKWINQDGCQVMCATIAFGM 962
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTLLPSRRSE 631
GIDK +VR +IH P+S+E YYQE+GRAGRDG ++ CVL Y+++ + L+ +
Sbjct: 963 GIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGEISHCVLFYSYSDVIRIKRLIAMDKDG 1022
Query: 632 DQTKQAYRM--LSDCFRYGMNTSCCRAKILVEYFGE-DFSHEKCQ-----LCDVCV 679
+Q +A + L + N + CR L+ YFGE F+ C+ +CD C
Sbjct: 1023 NQQSKATHINNLHSMVHFCENVAECRRIQLLAYFGEHTFNTSFCKEHPEVICDNCA 1078
>gi|326404494|ref|YP_004284576.1| ATP-dependent DNA helicase RecQ [Acidiphilium multivorum AIU301]
gi|325051356|dbj|BAJ81694.1| ATP-dependent DNA helicase RecQ [Acidiphilium multivorum AIU301]
Length = 610
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 131/222 (59%), Gaps = 15/222 (6%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
D ++ ++L++ FGH + Q++ ++ +A HD LVL TG GKS+C+Q+PA+ V
Sbjct: 12 DIAIEPEAVLRRVFGHDGFRGPQRDIVTHVIAGHDALVLMPTGGGKSICYQLPAICRRGV 71
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSG--QPDNKVEQKALR-GMYSIIYVCPETVI 272
+V+SPLI+LM +Q L + GV A S + +ALR G ++YV PE ++
Sbjct: 72 GIVVSPLIALMRNQVEALRQLGVRAAAFNSSLEAAERATVLRALRAGELDLLYVAPERLV 131
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
+ L S IALFAIDE HCVS+WGHDFRP+Y +L+ + E F +P
Sbjct: 132 --TEDFLALLGSVRIALFAIDEAHCVSQWGHDFRPEYLQLATIGERFPG---------VP 180
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+ALTATA Q R+DI + L + G + ++SF RPNL +++
Sbjct: 181 RIALTATADPQTRDDIARRLGLD-GARLFISSFDRPNLTYAI 221
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 99/199 (49%), Gaps = 10/199 (5%)
Query: 489 SFERTDLLNKPAERLSMLQEPL------EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R +L A ++ ++ L E I+Y +R A +L G G++A Y
Sbjct: 211 SFDRPNLTYAIAPKIEPRRQLLAFLRGHEGECGIVYCLSRAAVEETASWLAGQGLRALPY 270
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L + R F ++VATIAFGMGIDK ++R + H P SLEAYYQE GR
Sbjct: 271 HAGLDAATRNRNQDAFLGEDGLILVATIAFGMGIDKPDIRFVAHLDLPSSLEAYYQETGR 330
Query: 603 AGRDGHLADCVLYANLSSMPT---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A+ ++ + + L+ + D+ K+ R T+ CR + +
Sbjct: 331 AGRDGAPAETLMLYGMQDVALRGRLIDQSDAPDEVKRIARAKLGALLGVCETAGCRRRAV 390
Query: 660 VEYFGEDFSHEKCQLCDVC 678
+ +FGE + + C CD C
Sbjct: 391 LAHFGETYPGD-CGRCDNC 408
>gi|320157768|ref|YP_004190147.1| ATP-dependent DNA helicase RecQ [Vibrio vulnificus MO6-24/O]
gi|319933080|gb|ADV87944.1| ATP-dependent DNA helicase RecQ [Vibrio vulnificus MO6-24/O]
Length = 611
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 143/261 (54%), Gaps = 20/261 (7%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
SD + S+L + FG+ + + Q+ + A + D LV+ TG GKSLC+QIPAL+
Sbjct: 10 SDASMTPQSVLSQVFGYQTFREGQQSVIEAAVEGKDSLVIMPTGGGKSLCYQIPALVRSG 69
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTA-CFLGSGQPDN--KVEQKALRGMYSIIYVCPETV 271
+ +VISPLISLM DQ +L +GV A C + D V + G ++YV PE V
Sbjct: 70 ITLVISPLISLMKDQVDQLKANGVAAECVNSTLSRDALLSVYNRMHAGQLKLVYVSPERV 129
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
L++ E+ +A+ A+DE HC+S+WGHDFRP+Y L L+ +F +
Sbjct: 130 --LMRDFIERLENLPLAMIAVDEAHCISQWGHDFRPEYAALGQLKHHFP---------HV 178
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---K 386
P MALTATA R+DIL LH+++ + L SF RPN+R+ + KH S Y +
Sbjct: 179 PFMALTATADDATRKDILSRLHLNEPHVY-LGSFDRPNIRYDLVEKHKPVSQVIRYLESQ 237
Query: 387 KDFCQLIDIYTKKKKTGEKEK 407
K C +I ++KK EK
Sbjct: 238 KGNCGIIYCGSRKKVEMLTEK 258
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 149/291 (51%), Gaps = 17/291 (5%)
Query: 487 DRSFERTDLL--NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544
DR R DL+ +KP ++ E + IIY +RK+ + + LC ++AA Y+A
Sbjct: 212 DRPNIRYDLVEKHKPVSQVIRYLESQKGNCGIIYCGSRKKVEMLTEKLCNNHIRAAGYHA 271
Query: 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAG 604
+ + V F + +++VVAT+AFGMGI+K NVR ++H+ P+++E+YYQE GRAG
Sbjct: 272 GMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAG 331
Query: 605 RDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVE 661
RDG A+ ++ A+++ + +L + Q + L+ + CR ++L+
Sbjct: 332 RDGLPAEAMMLYDPADITWLRRMLDEKDDGPQKQVESHKLNAMSAFA-EAQTCRRQVLLN 390
Query: 662 YFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKK 721
YFGE + + C CD+C+D PP+ + EEA + + N QS M + G++
Sbjct: 391 YFGE-YREKPCGNCDICLD-PPKHFDATEEARKALSCVYRVN-QSFGMGYVVEVLRGMQN 447
Query: 722 QKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIREGDDR 771
+ + + K+ + R+ S Y W + R + +KG + + R
Sbjct: 448 IRIREHGHDKISTYGLGRDHSHDY-------WVSIFRQLIHKGLLFQNITR 491
>gi|192293669|ref|YP_001994274.1| ATP-dependent DNA helicase RecQ [Rhodopseudomonas palustris TIE-1]
gi|192287418|gb|ACF03799.1| ATP-dependent DNA helicase RecQ [Rhodopseudomonas palustris TIE-1]
Length = 616
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 135/225 (60%), Gaps = 21/225 (9%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGK 214
D + + S+L FG S + Q+EA+ +A D LVL TG GKSLC+Q+PALL
Sbjct: 12 DLDARALSVLNHVFGLPSFRG-QQEAIVRHVADGGDALVLMPTGGGKSLCYQLPALLREG 70
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETV 271
VV+SPLI+LM DQ + L + GV A L S N +EQ+ L+G ++YV PE
Sbjct: 71 CGVVVSPLIALMRDQVAGLLESGVRAAALNSTLSYDEANDIEQQLLKGELDLLYVAPE-- 128
Query: 272 IRLIKP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKF 329
RL+ P L LA ++ I+LFAIDE HCVS+WGHDFRP+Y LS + E F
Sbjct: 129 -RLLTPRCLSLLARAK-ISLFAIDEAHCVSQWGHDFRPEYVGLSAIAEKFP--------- 177
Query: 330 DIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++P +ALTATA R +I + L ++ FV +SF RPN+R+S+
Sbjct: 178 NVPRIALTATADALTRREIAERLSLTDAPCFV-SSFDRPNIRYSI 221
Score = 112 bits (280), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 103/199 (51%), Gaps = 10/199 (5%)
Query: 493 TDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLR 552
D N PA+ + + + ++Y +R + IA+ L G+ A Y+A LP
Sbjct: 222 VDKQNAPAQLKAFIDDRHRGHSGVVYCLSRAKVEDIAETLSKSGLTALPYHAGLPAEIRA 281
Query: 553 RVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC 612
R F V+VATIAFGMGIDK +VR + H P+S+EAYYQE GRAGRDG +D
Sbjct: 282 RNQDRFLNEDGVVIVATIAFGMGIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGKPSDA 341
Query: 613 VLYANLSSMPTLLPSRRSEDQT--KQAYRMLS----DCFRYGMNTSCCRAKILVEYFGED 666
+ LS ++ RR D++ A++ +S D ++ CR L+ YFGE
Sbjct: 342 WMAYGLSD---IVQQRRMIDESSGSDAFKRVSMGKLDALVGLCESTGCRRTRLLGYFGET 398
Query: 667 FSHEKCQLCDVCVDGPPEM 685
HE C CD C+ PP++
Sbjct: 399 AQHESCGNCDNCLT-PPKV 416
>gi|365891951|ref|ZP_09430306.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. STM 3809]
gi|365332047|emb|CCE02837.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. STM 3809]
Length = 629
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 140/247 (56%), Gaps = 19/247 (7%)
Query: 148 PKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQI 207
P +D + ++L FG + Q++ + +CLVL TG GKSLC+Q+
Sbjct: 2 PAAPNAPTDTADRALAVLHSVFGLPGFRGAQEKVVRHVADGGNCLVLMPTGGGKSLCYQL 61
Query: 208 PALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSII 264
PALL +V+SPLI+LM DQ + L + GV A L S + ++VE++ + G ++
Sbjct: 62 PALLRKGCGIVVSPLIALMRDQVAGLIEAGVNAAVLNSTLSREEADEVERRLIVGDLDLL 121
Query: 265 YVCPETVIRLIKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANN 323
YV PE RL+ P L E IALFAIDE HCVS+WGHDFRP+Y LSV+ E F
Sbjct: 122 YVAPE---RLVTPRCLSLLERAEIALFAIDEAHCVSQWGHDFRPEYIGLSVIAERFP--- 175
Query: 324 LKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSS 381
D+P +ALTATA R++I + L ++ +FV SF RPN+R+ + KH+ +
Sbjct: 176 ------DVPRIALTATADELTRKEIAERLSLTDAPQFV-ASFDRPNIRYEIVDKHNGPAQ 228
Query: 382 RASYKKD 388
++ K+
Sbjct: 229 LKAFIKE 235
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 114/220 (51%), Gaps = 11/220 (5%)
Query: 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
DR R +E D N PA+ + ++E ++Y +R + A L G+ A Y
Sbjct: 211 DRPNIR-YEIVDKHNGPAQLKAFIKERHPGDAGVVYCLSRAKVEDTAAALNEAGITAIPY 269
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L + R F VVVAT+AFGMGIDK +VR + H P+S+EAYYQE GR
Sbjct: 270 HAGLDPAVRSRNQDRFINEDGVVVVATVAFGMGIDKPDVRFVAHLDLPKSIEAYYQETGR 329
Query: 603 AGRDGHLADCVLYANLSSMPTLLPSRRSEDQT--KQAYRMLS----DCFRYGMNTSCCRA 656
AGRDG + + LS ++ RR D++ A++ +S D T+ CR
Sbjct: 330 AGRDGKPSTAWMAYGLSD---IVQQRRMIDESTGADAFKRMSIRKLDALVALAETAGCRR 386
Query: 657 KILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILM 696
K+L+ YFGE + E C CD CV PP+M++ K A L+
Sbjct: 387 KLLLSYFGETPAGETCGNCDNCVS-PPKMRDGKVIAQKLL 425
>gi|384047158|ref|YP_005495175.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium WSH-002]
gi|345444849|gb|AEN89866.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium WSH-002]
Length = 711
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 136/240 (56%), Gaps = 27/240 (11%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L+ +FG+ S + Q+E++ L H+ + TG GKSLC+QIP+LL +VISPLIS
Sbjct: 10 LQSYFGYDSFRKGQEESIRYVLEGHNTACIMPTGGGKSLCYQIPSLLLEGTTLVISPLIS 69
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETV--IRLIKPLQ 279
LM DQ L+ G+ A ++ S +V+Q+ G Y ++YV PE + + ++ LQ
Sbjct: 70 LMKDQVDTLNAAGIPATYINSSLTHTEVQQRLEEVALGEYKLLYVAPERLESPQFLEQLQ 129
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L I L A+DE HC+S+WGHDFRP Y R+S L + L +M LTAT
Sbjct: 130 MLP----IPLVAVDEAHCISQWGHDFRPSYLRISDL--------ITKLSNAPIVMGLTAT 177
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKK 399
AT QVREDI ++LH+++ V+T F R NL F+V K R SY ID Y +K
Sbjct: 178 ATPQVREDICRALHINEEYT-VMTGFERENLSFAV--VKGQDRISY-------IDQYIRK 227
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 111/211 (52%), Gaps = 22/211 (10%)
Query: 490 FERTDL---LNKPAERLSMLQEPL---EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYN 543
FER +L + K +R+S + + + + IIY TRK+ + L GV + Y+
Sbjct: 202 FERENLSFAVVKGQDRISYIDQYIRKNDQEAGIIYAATRKDVEELHARLQKSGVNVSKYH 261
Query: 544 ASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRA 603
A + + F ++ ++V++AT AFGMGIDK N+R ++HY P+++E+YYQEAGRA
Sbjct: 262 AGMSANSRDEEQNRFLQDDVQVMIATSAFGMGIDKSNIRFVLHYQLPKNMESYYQEAGRA 321
Query: 604 GRDGHLADC-VLYAN--------LSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCC 654
GRDG ++C VLY+ L T P ++ +D K L + Y C
Sbjct: 322 GRDGLPSECIVLYSPQDIRVQRFLIEQSTSNPKKQIQDLEK-----LQNMVNYCHTEGCL 376
Query: 655 RAKILVEYFGEDFSHEKCQLCDVCVDGPPEM 685
+A IL YFGE +HE C C C D E+
Sbjct: 377 QAYIL-HYFGESEAHE-CGRCSNCTDDRVEI 405
>gi|171319362|ref|ZP_02908472.1| ATP-dependent DNA helicase RecQ [Burkholderia ambifaria MEX-5]
gi|171095433|gb|EDT40405.1| ATP-dependent DNA helicase RecQ [Burkholderia ambifaria MEX-5]
Length = 644
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 132/220 (60%), Gaps = 23/220 (10%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV----VVI 219
+L + FG+S+ + Q E + DCLVL TG GKSLC+QIPALL + +V+
Sbjct: 36 ILDEVFGYSAFRGQQGEIVEHVAGGGDCLVLMPTGGGKSLCYQIPALLRREAGQGAGIVV 95
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVI--RL 274
SPLI+LM DQ + LS+ GV A +L S + ++ALR G ++YV PE ++ R
Sbjct: 96 SPLIALMQDQVAALSEVGVRAAYLNSTLSGAEAAATERALREGEIDLLYVAPERLMTGRF 155
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
++ L+R I LFAIDE HCVS+WGHDFRP+Y +LSVL E F + +P +
Sbjct: 156 LELLERAR----IGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPS---------VPRI 202
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA R++I+ L + FV +SF RPN+R+ +
Sbjct: 203 ALTATADAITRDEIIHRLALDDARVFV-SSFDRPNIRYRI 241
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 132/267 (49%), Gaps = 26/267 (9%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVV- 567
DG T ++Y +R++ A++L GV+A Y+A + + ++R+ H E + + VV+
Sbjct: 263 DGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGM-EFEVRQKHQEMFQREEGVVMC 321
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 322 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKM 381
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D T CR L+ YFGE + + C CD C++ PP+
Sbjct: 382 IDESDADDAHKRVQTSKLDALLGLCETISCRRVRLLNYFGE--ASQPCGNCDTCLE-PPD 438
Query: 685 MKNLKEEANILM------QVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIR 738
+ EA + + Q + +N S+ + + I G + +K + R + ++ I
Sbjct: 439 SWDATREAQMALSCVFRAQRASGFNFGSSHLIE---ILRGGRTEKVLQRGHDQLSTFGIG 495
Query: 739 EQSQKYLATDLLWWRGLARIMENKGYI 765
A WR + R + GY+
Sbjct: 496 A------ALSEPEWRAIFRQLVAYGYL 516
>gi|58337296|ref|YP_193881.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM]
gi|227903882|ref|ZP_04021687.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
gi|58254613|gb|AAV42850.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM]
gi|227868273|gb|EEJ75694.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
Length = 590
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 126/215 (58%), Gaps = 16/215 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK+ FG+ S + QK + L + L + TG+GKSLC+Q+PAL+ + +VISPLI
Sbjct: 6 VLKQTFGYDSFRPGQKRVIDLVLNRQNVLAVMPTGAGKSLCYQVPALMNSGITLVISPLI 65
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ L ++G+ A L S KV ++A G +IY+ PE RL R
Sbjct: 66 SLMKDQIDALKQNGINAAALNSATSQEKVNPILRQAYEGKIKLIYITPE---RLAMDYFR 122
Query: 281 LAES-RGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ IAL A+DE HC+S+WGHDFRP YRR+ + SLK + ++ALTAT
Sbjct: 123 YQLNFLDIALVAVDEAHCISQWGHDFRPAYRRIY--------EGITSLKSNPNVLALTAT 174
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
AT V++DI + L++ K ++TSF RPNL F V
Sbjct: 175 ATPAVQDDISEQLNIPKKNT-IITSFTRPNLSFKV 208
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
D IIY TRK+ + YL + AY+ + + V F ++ +V+VAT A
Sbjct: 228 DHAGIIYTNTRKKVEGLTNYLAKNNISVGAYHGGMENKEREDVQEAFQFDRFQVIVATNA 287
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSR 628
FGMGIDK NVR +IH +++E+YYQEAGRAGRDG ++ ++ +L +
Sbjct: 288 FGMGIDKSNVRFVIHASSARNIESYYQEAGRAGRDGEESEAIMIYHSGDLRQYRYFIDKS 347
Query: 629 RSEDQTKQ-AYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVD 680
++++ ++ Y+ L Y NT C + +V YFG+D E C C C++
Sbjct: 348 NADEKYRELQYQKLQSITDYA-NTGECLQRYIVRYFGQDC--EPCGKCSNCLN 397
>gi|350529733|ref|ZP_08908674.1| ATP-dependent DNA helicase RecQ [Vibrio rotiferianus DAT722]
Length = 611
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 142/261 (54%), Gaps = 20/261 (7%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
SD V +L+ FG+ ++ Q+ + A + D LV+ TG GKSLC+QIPAL+
Sbjct: 10 SDSPVTPQRVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSG 69
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETV 271
+ +VISPLISLM DQ +L +GV A + S P + V + G ++YV PE V
Sbjct: 70 ITLVISPLISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLKLVYVSPERV 129
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
L++ E+ +++ A+DE HC+S+WGHDFRP+Y L L++ F +
Sbjct: 130 --LMRDFIERLENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQQFS---------HV 178
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---K 386
P MALTATA R DIL+ L ++ + L SF RPN+R+++ KH S Y +
Sbjct: 179 PFMALTATADDATRRDILERLQLNNPEVY-LGSFDRPNIRYNLVEKHKPVSQIVRYLETQ 237
Query: 387 KDFCQLIDIYTKKKKTGEKEK 407
K C +I ++KK EK
Sbjct: 238 KGNCGIIYCGSRKKVEMVTEK 258
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 157/314 (50%), Gaps = 28/314 (8%)
Query: 458 EFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLL--NKPAERLSMLQEPLEDGLT 515
+ LE +++ +V G F DR R +L+ +KP ++ E +
Sbjct: 194 DILERLQLNNPEVYLGSF-----------DRPNIRYNLVEKHKPVSQIVRYLETQKGNCG 242
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ + + LC ++AA Y+A + + V F + +++VVAT+AFGMG
Sbjct: 243 IIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMG 302
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ ++ A++S + +L +
Sbjct: 303 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGP 362
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
Q + L+ + CR ++L+ YFGE + + C CD+C+D PP+ + EEA
Sbjct: 363 QKQVETHKLNAMSAFA-EAQTCRRQVLLNYFGE-YREKPCGNCDICLD-PPKHFDATEEA 419
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLW 751
+ + N QS M + G++ + + + K+ I R+ S Y
Sbjct: 420 RKALSCVYRVN-QSFGMGYVVEVLRGMQNIRVRENGHDKISTYAIGRDHSHDY------- 471
Query: 752 WRGLARIMENKGYI 765
W + R + +KG +
Sbjct: 472 WVSIFRQLIHKGLL 485
>gi|424044511|ref|ZP_17782123.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HENC-03]
gi|408887908|gb|EKM26398.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HENC-03]
Length = 611
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 142/261 (54%), Gaps = 20/261 (7%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
SD V +L+ FG+ ++ Q+ + A + D LV+ TG GKSLC+QIPAL+
Sbjct: 10 SDSPVTPQRVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSG 69
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETV 271
+ +VISPLISLM DQ +L +GV A + S P + V + G ++YV PE V
Sbjct: 70 ITLVISPLISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLKLVYVSPERV 129
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
L++ E+ +++ A+DE HC+S+WGHDFRP+Y L L++ F +
Sbjct: 130 --LMRDFIERLENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQQFS---------HV 178
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---K 386
P MALTATA R DIL+ L ++ + L SF RPN+R+++ KH S Y +
Sbjct: 179 PFMALTATADDATRRDILERLQLNNPEVY-LGSFDRPNIRYNLVEKHKPVSQIVRYLETQ 237
Query: 387 KDFCQLIDIYTKKKKTGEKEK 407
K C +I ++KK EK
Sbjct: 238 KGNCGIIYCGSRKKVEMVTEK 258
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 157/314 (50%), Gaps = 28/314 (8%)
Query: 458 EFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLL--NKPAERLSMLQEPLEDGLT 515
+ LE +++ +V G F DR R +L+ +KP ++ E +
Sbjct: 194 DILERLQLNNPEVYLGSF-----------DRPNIRYNLVEKHKPVSQIVRYLETQKGNCG 242
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ + + LC ++AA Y+A + + V F + +++VVAT+AFGMG
Sbjct: 243 IIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMG 302
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ ++ A++S + +L +
Sbjct: 303 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGP 362
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
Q + L+ + CR ++L+ YFGE + + C CD+C+D PP+ + EEA
Sbjct: 363 QKQVETHKLNAMSAFA-EAQTCRRQVLLNYFGE-YRDKPCGNCDICLD-PPKHFDATEEA 419
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLW 751
+ + N QS M + G++ + + + K+ I R+ S Y
Sbjct: 420 RKALSCVYRVN-QSFGMGYVVEVLRGMQNIRVRENGHDKISTYAIGRDHSHDY------- 471
Query: 752 WRGLARIMENKGYI 765
W + R + +KG +
Sbjct: 472 WVSIFRQLIHKGLL 485
>gi|407714991|ref|YP_006835556.1| ATP-dependent DNA helicase RecQ [Burkholderia phenoliruptrix
BR3459a]
gi|407237175|gb|AFT87374.1| ATP-dependent DNA helicase RecQ [Burkholderia phenoliruptrix
BR3459a]
Length = 615
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 132/222 (59%), Gaps = 27/222 (12%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-------TGKVV 216
+L + FG+ + + Q E + + DCLVL TG GKSLC+QIP+L+ TG
Sbjct: 7 ILNEVFGYPAFRGQQGEIVEHVASGGDCLVLMPTGGGKSLCYQIPSLVRRERGFGTG--- 63
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVIR 273
+V+SPLI+LM DQ + L++ GV A +L S + ++ALR G ++YV PE R
Sbjct: 64 IVVSPLIALMQDQVAALTEVGVRAAYLNSTLSSAEAMATERALRDGDIDLLYVAPE---R 120
Query: 274 LIKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
L+ P Q L E I LFAIDE HCVS+WGHDFRP+Y +LSVL E F ++P
Sbjct: 121 LMTPRFQELLERTRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------NVP 171
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+ALTATA R++I+ L + FV +SF RPN+R+ +
Sbjct: 172 RIALTATADAITRDEIIHRLALDDARIFV-SSFDRPNIRYRI 212
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVV 567
DG T ++Y +R++ A++L G++A Y+A + + + R+ H E F + V+
Sbjct: 234 DGTTDAGVVYCLSRRKVEETAEWLKEKGMRALPYHAGM-EFETRQKHQEMFQREEGIVMC 292
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG ++ + L + +
Sbjct: 293 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPSNAWMAYGLGDVVQQRKM 352
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D + CR L+ YFGE + + C CD C++ PP
Sbjct: 353 IDESDADDAHKRVQTGKLDALLGLCEAATCRRVRLLAYFGE--ASKPCGNCDNCLE-PPA 409
Query: 685 MKNLKEEANILM------QVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIR 738
+ EA + + Q + +N + + D I G + +K + R + K+ I
Sbjct: 410 TWDATREAQMALSCVFRAQRASGFNFGAGHLID---ILRGNRSEKVLQRGHEKLTTFGIG 466
Query: 739 EQSQKYLATDLLWWRGLARIMENKGYI 765
A WR + R + GY+
Sbjct: 467 A------ALGEPEWRAVFRQLVAFGYL 487
>gi|253991584|ref|YP_003042940.1| ATP-dependent DNA helicase [Photorhabdus asymbiotica]
gi|211638462|emb|CAR67084.1| atp-dependent dna helicase recq (ec 3.6.1.-) [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253783034|emb|CAQ86199.1| ATP-dependent DNA helicase [Photorhabdus asymbiotica]
Length = 608
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 134/215 (62%), Gaps = 15/215 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
+L++ FG+ + Q++ ++ L DCLV+ TG GKSLC+QIPAL+ V +V+SPL
Sbjct: 15 QVLRETFGYQQFRPGQQQVINTILEGRDCLVIMPTGGGKSLCYQIPALIQEGVTLVVSPL 74
Query: 223 ISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +GV A L S Q + V ++ +GM ++Y+ PE ++ + L+
Sbjct: 75 ISLMKDQVDQLQANGVAADCLNSTQAREQQIDVIRRCRQGMVKLLYIAPERLM-MDNFLE 133
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L E + A+ A+DE HC+S+WGHDFRP+YR L LR+ F +P++ALTAT
Sbjct: 134 QLLEWQP-AILAVDEAHCISQWGHDFRPEYRALGQLRQRFPT---------LPVIALTAT 183
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
A R DI++ L+++ + +SF RPN+R+++
Sbjct: 184 ADETTRNDIVRLLNLNNPLIHI-SSFDRPNIRYTL 217
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 143/291 (49%), Gaps = 25/291 (8%)
Query: 487 DRSFERTDLLNK--PAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544
DR R L+ K P ++L + + IIY +R + ++ L G+ A Y+A
Sbjct: 209 DRPNIRYTLIEKYKPLDQLWLFIRAQKGKSGIIYCNSRSKVEETSERLQKRGLSVAPYHA 268
Query: 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAG 604
L +Q RV F + L+VVVAT+AFGMGI+K NVR ++H+ P+++E+YYQE GRAG
Sbjct: 269 GLDNNQRARVQDAFQRDDLQVVVATVAFGMGINKPNVRFVVHFNIPRNIESYYQETGRAG 328
Query: 605 RDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMN-------TSCCRAK 657
RDG A+ VL+ + + M L RR ++ + D R+ +N CR
Sbjct: 329 RDGLPAEAVLFYDPADMVWL---RRCLEEKPVGTQ--QDIERHKLNAMGAFAEAQTCRRL 383
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYS 717
+L+ YFGE+ C CD+C+D P L + L V Q + +
Sbjct: 384 VLLNYFGEN-KQNLCGNCDICLDPPKNYDGLVDAQKALSCVYRV--GQRFGIGYIVEVLR 440
Query: 718 GIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIRE 767
G Q+ D + ++ V I +EQSQ+Y W + R + + G+I +
Sbjct: 441 GSNNQRIRDMGHDRLPVYGIGKEQSQEY-------WISVLRQLIHLGFISQ 484
>gi|424030704|ref|ZP_17770183.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HENC-01]
gi|408881586|gb|EKM20462.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HENC-01]
Length = 611
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 142/261 (54%), Gaps = 20/261 (7%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
SD V +L+ FG+ ++ Q+ + A + D LV+ TG GKSLC+QIPAL+
Sbjct: 10 SDSPVTPQRVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSG 69
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETV 271
+ +VISPLISLM DQ +L +GV A + S P + V + G ++YV PE V
Sbjct: 70 ITLVISPLISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLKLVYVSPERV 129
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
L++ E+ +++ A+DE HC+S+WGHDFRP+Y L L++ F +
Sbjct: 130 --LMRDFIERLENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQQFS---------HV 178
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---K 386
P MALTATA R DIL+ L ++ + L SF RPN+R+++ KH S Y +
Sbjct: 179 PFMALTATADDATRRDILERLQLNNPEVY-LGSFDRPNIRYNLVEKHKPVSQIVRYLETQ 237
Query: 387 KDFCQLIDIYTKKKKTGEKEK 407
K C +I ++KK EK
Sbjct: 238 KGNCGIIYCGSRKKVEMVTEK 258
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 157/314 (50%), Gaps = 28/314 (8%)
Query: 458 EFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLL--NKPAERLSMLQEPLEDGLT 515
+ LE +++ +V G F DR R +L+ +KP ++ E +
Sbjct: 194 DILERLQLNNPEVYLGSF-----------DRPNIRYNLVEKHKPVSQIVRYLETQKGNCG 242
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ + + LC ++AA Y+A + + V F + +++VVAT+AFGMG
Sbjct: 243 IIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMG 302
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ ++ AN+S + +L +
Sbjct: 303 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPANISWLRRMLDEKDDGP 362
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
Q + L+ + CR ++L+ YFGE + + C CD+C+D PP+ + EEA
Sbjct: 363 QKQVETHKLNAMSAFA-EAQTCRRQVLLNYFGE-YREKPCGNCDICLD-PPKHFDATEEA 419
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLW 751
+ + N QS M + G++ + + + K+ I R+ S Y
Sbjct: 420 RKALSCVYRVN-QSFGMGYVVEVLRGMQNIRVRENGHDKISTYAIGRDHSHDY------- 471
Query: 752 WRGLARIMENKGYI 765
W + R + +KG +
Sbjct: 472 WVSIFRQLIHKGLL 485
>gi|357155794|ref|XP_003577240.1| PREDICTED: ATP-dependent DNA helicase Q-like 1-like [Brachypodium
distachyon]
Length = 599
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 128/216 (59%), Gaps = 21/216 (9%)
Query: 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHD 228
FG+ S + Q EA SA L + DC +L TG GKSLC+Q+PA L V VV+ PL+SL+ D
Sbjct: 193 FGNKSFRPLQYEACSAALNNRDCFILMPTGGGKSLCYQLPATLHPGVTVVVCPLLSLIQD 252
Query: 229 QCSKLS-KHGVTACFLGSGQPDNK---VEQKALRGM--YSIIYVCPETVI---RLIKPLQ 279
Q L+ K G+ A FL S Q ++ V Q+ G + ++YV PE ++ ++ L+
Sbjct: 253 QVVALTFKFGIQASFLNSQQTSSQASVVMQELRNGTPSFKLLYVTPERMVGNYSFMEILR 312
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L + +A F IDE HCVS+WGHDFRPDYR L L++NF +P+MALTAT
Sbjct: 313 GLHQRGLLARFVIDEAHCVSQWGHDFRPDYRALGCLKQNFP---------RVPIMALTAT 363
Query: 340 ATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSV 374
AT VR+DIL +L + VL SF R NL + V
Sbjct: 364 ATEAVRKDILSTLRVPNA--LVLKRSFDRLNLNYMV 397
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 32/226 (14%)
Query: 488 RSFERTDL-------LNKPAERLS-MLQEPLEDGLTIIYVPTRKETLSIAKYLC-GFGVK 538
RSF+R +L P +L +L+E + I+Y ++ E AK+L + +K
Sbjct: 386 RSFDRLNLNYMVIGKTKTPQMQLGELLKERFMNMSGIVYCLSKNECADTAKFLREKYKIK 445
Query: 539 AAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQ 598
A Y+A L Q V ++H +++V+ ATIAFGMGIDK +VR +IH +S+E+YYQ
Sbjct: 446 CAHYHAGLAARQRTSVQEKWHRGEVKVICATIAFGMGIDKPDVRFVIHNTLSKSIESYYQ 505
Query: 599 EAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTS------ 652
E+GRAGRD A CV+ ++ R+ D K S+ F+ M+ +
Sbjct: 506 ESGRAGRDDLPAHCVVLYQKKDFSRIVCMLRNGDNFK------SETFKVAMDQAKKMQAY 559
Query: 653 C-----CRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEAN 693
C CR + L+ +FGE + ++C+ DGP N + A+
Sbjct: 560 CELKTECRRQTLLAHFGEQYDRQRCK------DGPSPCDNCLKTAS 599
>gi|238763624|ref|ZP_04624584.1| ATP-dependent DNA helicase recQ [Yersinia kristensenii ATCC 33638]
gi|238698102|gb|EEP90859.1| ATP-dependent DNA helicase recQ [Yersinia kristensenii ATCC 33638]
Length = 610
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 137/222 (61%), Gaps = 19/222 (8%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
E+ +L+ FG+ + Q+E ++A L+ DCLV+ TG GKSLC+QIPAL+T + +
Sbjct: 10 ELLAEQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTL 69
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL-----RGMYSIIYVCPETVI 272
V+SPLISLM DQ +L +GV A L S Q + +Q A+ G ++Y+ PE ++
Sbjct: 70 VVSPLISLMKDQVDQLLAYGVGAGCLNSSQ--TREQQLAVMDGCRSGQIKLLYIAPERLV 127
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
+ L +L + R AL A+DE HC+S+WGHDFRP+YR L L++ F D+P
Sbjct: 128 -MESFLDQLHQWRP-ALLAVDEAHCISQWGHDFRPEYRALGQLKQRFP---------DLP 176
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++ALTATA R DI++ L++ + ++SF RPN+R+++
Sbjct: 177 VIALTATADEATRGDIVRLLNL-ENPLIQVSSFDRPNIRYTL 217
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 99/187 (52%), Gaps = 13/187 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R + L G+ AAY+A L + +V F + L+VVVAT+AFGMG
Sbjct: 240 IIYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ +L + + M L RR ++
Sbjct: 300 INKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWL---RRCLEEKP 356
Query: 636 QAYRMLSDCFRYGMN-------TSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
+ D R+ +N CR +L+ YFGE + C CD+C+D P L
Sbjct: 357 AGAQ--QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEG-KQQSCGNCDICLDPPKRYDGL 413
Query: 689 KEEANIL 695
+ L
Sbjct: 414 ADAQKAL 420
>gi|378949445|ref|YP_005206933.1| RecQ protein [Pseudomonas fluorescens F113]
gi|359759459|gb|AEV61538.1| RecQ [Pseudomonas fluorescens F113]
Length = 708
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLATRIKRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + +S IALFAIDE HCVS+WGHDFR +Y +L L E F D+P +A
Sbjct: 121 PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I++ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVERLHLQNAERF-LSSFDRPNIFYRI 209
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 110/204 (53%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +LC G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLAERRSDA-GIVYCLSRKKVDEVAAFLCEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP + LR H + F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NDLRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 317 GRAGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED + C CD CVDG
Sbjct: 377 TLLAYFDEDMP-QPCGHCDNCVDG 399
>gi|374288119|ref|YP_005035204.1| putative ATP-dependent DNA helicase [Bacteriovorax marinus SJ]
gi|301166660|emb|CBW26236.1| putative ATP-dependent DNA helicase [Bacteriovorax marinus SJ]
Length = 637
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 87/224 (38%), Positives = 134/224 (59%), Gaps = 17/224 (7%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKV 215
D++ +L+ FGH ++ Q++ ++ L D LVL TG GKSLC+QIPA++ V
Sbjct: 19 DYKESAREVLRTVFGHHDFRDQQEKIVTEVLEGRDALVLMPTGGGKSLCYQIPAIVRKGV 78
Query: 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVI 272
+VISPLISLM DQ S L++ GV A +L S + N++E K +G ++Y+ PE
Sbjct: 79 GIVISPLISLMEDQVSTLNEMGVEAYYLNSSLSREESNEIEAKLRQGQVELLYLAPE--- 135
Query: 273 RLIKPLQ-RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
RL++P + S +++ AIDE HCVS+WG DFRP+Y L++L F ++
Sbjct: 136 RLLQPYTLNMLSSIDVSVIAIDEAHCVSRWGPDFRPEYMNLNILSNKFP---------NV 186
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
P +ALTATA ++ R+ I L + K + L+SF RPN+ + ++
Sbjct: 187 PRIALTATADMESRKIIANELSL-KNARVFLSSFDRPNISYEIE 229
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 133/261 (50%), Gaps = 25/261 (9%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ A +L G A Y+A + ++ ++V F + + +VVATIAFGMG
Sbjct: 253 IIYCLSRKKVEQTAAFLVENGFIAYPYHAGMSSTKRKKVQQHFLQGEGVIVVATIAFGMG 312
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYANL-SSMPTLLPSRRSEDQ 633
IDK +VR + H P+S+E+YYQE GRA RDG A +LY+ S++ L + + D+
Sbjct: 313 IDKPDVRFVGHMDMPKSIESYYQETGRAARDGLAAQAWMLYSRRDSAVLKHLIRKGTRDR 372
Query: 634 TKQAYR------MLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKN 687
T++ ML C T+ CR ++++ + ED S E C CDVC G E +
Sbjct: 373 TQRKVEEHHIELMLGLC-----ETTRCRREVILSFLDED-SPEYCGNCDVC-QGSLEGRE 425
Query: 688 LKEEAN-ILMQVIAAYN-EQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYL 745
L++ + IL+ + A Y Q S + +G + +F + +L ++ Q Q
Sbjct: 426 LQDVTDEILLYLTAIYKLNQKMSYETVISFLTGDESFRFHEYTSLPLYA-----QGQ--- 477
Query: 746 ATDLLWWRGLARIMENKGYIR 766
D WR + R+ G I+
Sbjct: 478 GIDSSKWREIHRVALTCGLIQ 498
>gi|290490724|dbj|BAI79322.1| BLM helicase [Gallus gallus]
Length = 1380
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 126/219 (57%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ + FG S + Q EA++A L DC +L TG GKSLC+Q+PA ++ V VVISPL
Sbjct: 626 IFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLR 685
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL + A +L D + ++ + ++YV PE V RL+
Sbjct: 686 SLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASNRLL 745
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L + + +A F IDE HCVS+WGHDFR DY+RL++LR+ F +P+MA
Sbjct: 746 SALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKF---------HSVPMMA 796
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DI L M K F + SF R NL++ V
Sbjct: 797 LTATANPRVQKDIQNQLEMLKPQVFTM-SFNRHNLKYDV 834
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 96/175 (54%), Gaps = 12/175 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVVATIAFGM 574
IIY +R E + A L G+ A AY+A L S V ++ ++ +V+ ATIAFGM
Sbjct: 860 IIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATIAFGM 919
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL----LPSRRS 630
GIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L+ + S + L L +
Sbjct: 920 GIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDG 979
Query: 631 EDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGE-DFSHEKCQ-----LCDVC 678
T+Q + L Y N CR L+ YFGE DF+ C+ +CD C
Sbjct: 980 NSHTRQTHFNNLYSMVHYCENVVDCRRIQLLAYFGETDFNPNFCKDHPEVICDNC 1034
>gi|222053514|ref|YP_002535876.1| ATP-dependent DNA helicase RecQ [Geobacter daltonii FRC-32]
gi|221562803|gb|ACM18775.1| ATP-dependent DNA helicase RecQ [Geobacter daltonii FRC-32]
Length = 605
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 122/221 (55%), Gaps = 17/221 (7%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
E L K FG+ S + Q+E + + D V+ TG GKSLC+QIPAL V +
Sbjct: 2 EANPQQTLLKVFGYKSFRQPQQEIVEGLIRGEDAFVIMPTGGGKSLCYQIPALHRPGVAI 61
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMY----SIIYVCPETVIR 273
V+SPLISLM DQ L +GV A F S + K Q L M+ ++YV PE ++
Sbjct: 62 VVSPLISLMKDQVDALQANGVKAAFYNSSLSEAKARQ-VLAQMHDDALDLLYVAPERLMS 120
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
+P E +ALFAIDE HCVS+WGHDFRP+Y +L LR+ F +PL
Sbjct: 121 --EPFLERLEDVKVALFAIDEAHCVSQWGHDFRPEYVQLGRLRQLFP---------QVPL 169
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+ALTATA Q R DI++ L + +V F RPN+R+ V
Sbjct: 170 IALTATADPQTRNDIIERLGLGTAACYV-AGFDRPNIRYLV 209
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 119/203 (58%), Gaps = 11/203 (5%)
Query: 497 NKPAERLSML---QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR 553
+KP ++L ++P E G I+Y +RK +A L GV AA Y+A LP+ + R
Sbjct: 213 HKPFDQLRSFLSSRQPGEPG--IVYALSRKRVEEVAARLVQSGVAAAPYHAGLPERERSR 270
Query: 554 VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV 613
V F ++L+VVVAT+AFGMGIDK N+R ++HY P+++E+YYQE GRAGRDG A+ +
Sbjct: 271 VQEAFQRDELQVVVATVAFGMGIDKSNIRFVVHYDLPKNIESYYQETGRAGRDGLPAEAL 330
Query: 614 L---YANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHE 670
L Y +++ L+ + + +Q + L+ + CR ++L+ YFG +H+
Sbjct: 331 LLFGYGDIAVARGLIENGTNAEQKRIELHKLNAMVGFA-EAVTCRRRVLLGYFGAALNHD 389
Query: 671 KCQLCDVCVDGPPEMKNLKEEAN 693
C CDVC+D PP+ + EA
Sbjct: 390 -CGNCDVCID-PPQRYDATVEAQ 410
>gi|398307607|ref|ZP_10511193.1| ATP-dependent DNA helicase RecQ [Bacillus vallismortis DV1-F-3]
Length = 591
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 134/248 (54%), Gaps = 28/248 (11%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEAL-SAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
+ SLL +FG+ L+N Q+EA+ S + + TG GKS+C+QIPAL+ +V
Sbjct: 4 RAQSLLAHYFGYEKLRNGQEEAIRSVTEVRQNTACIMPTGGGKSICYQIPALMFEGTTIV 63
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK--ALR-GMYSIIYVCPE--TVIR 273
ISPLISLM DQ L + G++A ++ S Q + ++ + L+ G Y + Y+ PE T
Sbjct: 64 ISPLISLMKDQVDALEEAGISAAYINSTQSNQEIYGRLNGLKEGAYKLFYITPERLTSAE 123
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
I+ LQ + + L AIDE HC+S+WGHDFRP YR + +L + L +
Sbjct: 124 FIRILQGI----DVPLVAIDEAHCISQWGHDFRPSYRNIEIL--------FRELHDKPVI 171
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLI 393
MALTATAT +V EDI K LH+ K V T F R NL F V + R I
Sbjct: 172 MALTATATPEVHEDICKQLHIHKENT-VYTGFSRDNLTFKVAKGENKDR---------FI 221
Query: 394 DIYTKKKK 401
D Y ++ K
Sbjct: 222 DEYVQQNK 229
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 101/197 (51%), Gaps = 6/197 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY TRKE I + L ++A Y+ L + F ++L+V+VAT AFGMG
Sbjct: 234 IIYTATRKEADRIYEKLKRNQIRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMG 293
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
IDK N+R ++H P+ +E+YYQEAGRAGRDG ++CVL ++ L+ E+
Sbjct: 294 IDKSNIRFVLHAQIPKDMESYYQEAGRAGRDGLESECVLLFSPQDIMVQRFLIEQSEHEE 353
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
+ KQ + L Y +T C + ++ YFGE + C C C D ++ EA
Sbjct: 354 KQKQDLKKLRQMVNY-CHTEDCLQRFILMYFGEK-EPDACGHCGNCTD-TRTAHDVTREA 410
Query: 693 NILMQVIAAYNEQSNSM 709
+++ I E+ M
Sbjct: 411 QMVLSCIIRMKERFGKM 427
>gi|428166873|gb|EKX35841.1| hypothetical protein GUITHDRAFT_146193 [Guillardia theta CCMP2712]
Length = 865
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 101/262 (38%), Positives = 142/262 (54%), Gaps = 35/262 (13%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK FG S Q+ A L D V ATGSGKS+C+Q+PA ++ K VVV+SPLIS
Sbjct: 29 LKHFFGFESFVGEQEVICRAALQGRDSAVFWATGSGKSICYQLPAFVSNKTVVVVSPLIS 88
Query: 225 LMHDQCSKLSKHGV---------TACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIR-- 273
LM+DQ + ++ H V A FLG G D E A G +++Y+ PE +
Sbjct: 89 LMNDQVNAIN-HKVGSLMPTGKRAAVFLGQGNKDPDAENLARSGRCALLYLTPEKIFDGG 147
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
+ L+ LA S +ALFAIDE HCVS+WG DFRP Y L LRE+F ++P+
Sbjct: 148 FLNQLEALASSGQLALFAIDEAHCVSQWGVDFRPSYALLRKLRESFD---------NVPI 198
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLI 393
MALTA+A +VR+D+ L++ + +++ RPNL+ +V S + ++ D +
Sbjct: 199 MALTASAVPRVRDDLFSILNL-RSPIISVSTCDRPNLKITV-----SRKQTFAADVNYIC 252
Query: 394 DIYTKKK--------KTGEKEK 407
DI +K TGE EK
Sbjct: 253 DILSKMSGSAIVYVATTGEAEK 274
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVK------AAAYNASLPKSQLR-RVHTEFHENKLEV 565
G I+YV T E A+ LC ++ A Y K + R H +F ++V
Sbjct: 260 GSAIVYVATTGE----AEKLCTAILQKSENKITARYYHGKDKMEARDTTHHQFLTGVIKV 315
Query: 566 VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT-- 623
VVAT AFGMGIDK ++R +IHYG P++ E YYQ GRAGRDG +DC++ + S
Sbjct: 316 VVATTAFGMGIDKPDIRCVIHYGAPKTFEEYYQHIGRAGRDGLQSDCIMICSDSDFSKYN 375
Query: 624 --LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFS-HEKCQLCDVCVD 680
+ S+D S + M CR K+++++FGE + ++C CD C
Sbjct: 376 DDFYLNGLSQDNKVAVKNSTSYLRTFAMEQDKCRRKLVLDFFGESSAWGDRCGDCDNCAK 435
Query: 681 ---GPPEMKNLKEEANILMQVIAAY 702
++ +EA++L++ I A+
Sbjct: 436 IATNGASSRDFSKEASVLLRAIEAF 460
>gi|117922195|ref|YP_871387.1| ATP-dependent DNA helicase RecQ [Shewanella sp. ANA-3]
gi|117614527|gb|ABK49981.1| ATP-dependent DNA helicase RecQ [Shewanella sp. ANA-3]
Length = 607
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 131/215 (60%), Gaps = 20/215 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
L + FG+ ++ Q+E + + DCLV+ TG GKSLC+Q+PALL + +V+SPLIS
Sbjct: 17 LAQVFGYRDFRDGQREVIERVCSGEDCLVIMPTGGGKSLCYQLPALLMPGITIVVSPLIS 76
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIR--LIKPLQ 279
LM DQ L + GV A +L S QP + V ++ RG ++YV PE ++ I+ ++
Sbjct: 77 LMKDQVDSLLQTGVNAAYLNSSQPREQSVEVLRQLHRGELKLLYVSPERLLTGDFIERMR 136
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
L +++FAIDE HC+S+WGHDFRP+Y L L++ F +P+MALTAT
Sbjct: 137 SLP----LSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFP---------HVPMMALTAT 183
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
A R++I + L ++ +L+SF RPN+R++V
Sbjct: 184 ADQATRQNICERLGINPFR--LLSSFDRPNIRYTV 216
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 16/222 (7%)
Query: 489 SFERTDLLNKPAERLS--------MLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAA 540
SF+R ++ AE+L+ +LQ+ G I+Y +R+ +A+ L G A
Sbjct: 206 SFDRPNIRYTVAEKLNAANQLRQFLLQQNGSSG--IVYCSSRRRVDEVAERLILQGFHAK 263
Query: 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
AY+A + + V F ++++++VVAT+AFGMGI+K NVR ++HY P+S+EAYYQE
Sbjct: 264 AYHAGMTPQERGEVQDSFLKDQIDIVVATVAFGMGINKSNVRFVVHYDIPKSIEAYYQET 323
Query: 601 GRAGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG A+ + A++ + L+ Q + + L+ + CR +
Sbjct: 324 GRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQQQVDFHKLNTMAAFA-EAQTCRRQ 382
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
+L+ YF E + E C CD+C+D PP+ N E+A ++ I
Sbjct: 383 VLLHYFDES-ALEPCGNCDICLD-PPKRYNGTEDAQKVLSCI 422
>gi|238789392|ref|ZP_04633178.1| ATP-dependent DNA helicase recQ [Yersinia frederiksenii ATCC 33641]
gi|238722535|gb|EEQ14189.1| ATP-dependent DNA helicase recQ [Yersinia frederiksenii ATCC 33641]
Length = 610
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 136/222 (61%), Gaps = 19/222 (8%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
E+ +L+ FG+ + Q+E ++A LA DCLV+ TG GKSLC+QIPAL+T + +
Sbjct: 10 ELLAEQVLRDTFGYQQFRPGQQEIINATLAGQDCLVVMPTGGGKSLCYQIPALVTDGLTL 69
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL-----RGMYSIIYVCPETVI 272
V+SPLISLM DQ +L +GV A L S Q + +Q A+ G ++Y+ PE ++
Sbjct: 70 VVSPLISLMKDQVDQLLAYGVGAGCLNSSQ--TREQQLAVMDGCRSGQIKLLYIAPERLV 127
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
+ L +L + R L A+DE HC+S+WGHDFRP+YR L L++ F D+P
Sbjct: 128 -MESFLDQLHQWRP-GLLAVDEAHCISQWGHDFRPEYRALGQLKQRFP---------DLP 176
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++ALTATA R DI++ L++ + ++SF RPN+R+++
Sbjct: 177 VIALTATADEATRGDIVRLLNLDQPL-IQVSSFDRPNIRYTL 217
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 99/187 (52%), Gaps = 13/187 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R + L G+ AAY+A L + +V F + L+VVVAT+AFGMG
Sbjct: 240 IIYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ +L + + M L RR ++
Sbjct: 300 INKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWL---RRCLEEKP 356
Query: 636 QAYRMLSDCFRYGMN-------TSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
+ D R+ +N CR +L+ YFGE + C CD+C+D P L
Sbjct: 357 AGAQ--QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEG-KQQSCGNCDICLDPPKRYDGL 413
Query: 689 KEEANIL 695
+ L
Sbjct: 414 ADAQKAL 420
>gi|424038225|ref|ZP_17776853.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HENC-02]
gi|408894628|gb|EKM31275.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HENC-02]
Length = 611
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 142/261 (54%), Gaps = 20/261 (7%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
SD V +L+ FG+ ++ Q+ + A + D LV+ TG GKSLC+QIPAL+
Sbjct: 10 SDSPVTPQRVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSG 69
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETV 271
+ +VISPLISLM DQ +L +GV A + S P + V + G ++YV PE V
Sbjct: 70 ITLVISPLISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGNLKLVYVSPERV 129
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
L++ E+ +++ A+DE HC+S+WGHDFRP+Y L L++ F +
Sbjct: 130 --LMRDFIERLENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQQFS---------HV 178
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---K 386
P MALTATA R DIL+ L ++ + L SF RPN+R+++ KH S Y +
Sbjct: 179 PFMALTATADDATRRDILERLQLNNPEVY-LGSFDRPNIRYNLVEKHKPVSQIVRYLETQ 237
Query: 387 KDFCQLIDIYTKKKKTGEKEK 407
K C +I ++KK EK
Sbjct: 238 KGNCGIIYCGSRKKVEMVTEK 258
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 157/314 (50%), Gaps = 28/314 (8%)
Query: 458 EFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLL--NKPAERLSMLQEPLEDGLT 515
+ LE +++ +V G F DR R +L+ +KP ++ E +
Sbjct: 194 DILERLQLNNPEVYLGSF-----------DRPNIRYNLVEKHKPVSQIVRYLETQKGNCG 242
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ + + LC ++AA Y+A + + V F + +++VVAT+AFGMG
Sbjct: 243 IIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMG 302
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ ++ A++S + +L +
Sbjct: 303 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGP 362
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
Q + L+ + CR ++L+ YFGE + + C CD+C+D PP+ + EEA
Sbjct: 363 QKQVETHKLNAMSAFA-EAQTCRRQVLLNYFGE-YREKPCGNCDICLD-PPKHFDATEEA 419
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLW 751
+ + N QS M + G++ + + + K+ I R+ S Y
Sbjct: 420 RKALSCVYRVN-QSFGMGYVVEVLRGMQNIRVRENGHDKISTYAIGRDHSHDY------- 471
Query: 752 WRGLARIMENKGYI 765
W + R + +KG +
Sbjct: 472 WVSIFRQLIHKGLL 485
>gi|238793565|ref|ZP_04637189.1| ATP-dependent DNA helicase recQ [Yersinia intermedia ATCC 29909]
gi|238727155|gb|EEQ18685.1| ATP-dependent DNA helicase recQ [Yersinia intermedia ATCC 29909]
Length = 610
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 137/222 (61%), Gaps = 19/222 (8%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
E+ +L+ FG+ + Q+E ++A L+ DCLV+ TG GKSLC+QIPAL+T + +
Sbjct: 10 ELLAVQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTL 69
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL-----RGMYSIIYVCPETVI 272
V+SPLISLM DQ +L +GV A L S Q + +Q A+ G ++Y+ PE ++
Sbjct: 70 VVSPLISLMKDQVDQLLAYGVGAGCLNSSQ--TREQQLAVMDGCRSGQIKLLYIAPERLV 127
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
+ L +L + R AL A+DE HC+S+WGHDFRP+YR L L++ F D+P
Sbjct: 128 -MESFLDQLYQWRP-ALLAVDEAHCISQWGHDFRPEYRALGQLKQRFP---------DLP 176
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++ALTATA R DI++ L++ + ++SF RPN+R+++
Sbjct: 177 VIALTATADEATRGDIVRLLNLDQPL-IQISSFDRPNIRYTL 217
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 99/187 (52%), Gaps = 13/187 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R + L G+ AAY+A L + +V F + L+VVVAT+AFGMG
Sbjct: 240 IIYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRGQVQEAFQRDDLQVVVATVAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ +L + + M L RR ++
Sbjct: 300 INKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWL---RRCLEEKP 356
Query: 636 QAYRMLSDCFRYGMN-------TSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
+ D R+ +N CR +L+ YFGE + C CD+C+D P L
Sbjct: 357 AGAQ--QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEG-KQQSCGNCDICLDPPKRYDGL 413
Query: 689 KEEANIL 695
+ L
Sbjct: 414 ADAQKAL 420
>gi|425778070|gb|EKV16215.1| RecQ family helicase MusN [Penicillium digitatum Pd1]
gi|425780607|gb|EKV18613.1| RecQ family helicase MusN [Penicillium digitatum PHI26]
Length = 1426
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 130/233 (55%), Gaps = 25/233 (10%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK-- 214
W +V +LK F + Q EA+ A LA D +L TG GKSLC+Q+P+++TG
Sbjct: 557 WSQEVRKVLKDRFHLRGFRPNQLEAIDATLAGKDTFILMPTGGGKSLCYQLPSVVTGGST 616
Query: 215 --VVVVISPLISLMHDQCSKLSKHGVTACFL-GSGQPDNK------VEQKALRGMYSIIY 265
V +VISPL+SLM DQ S L K V A + G P+ K + GM ++Y
Sbjct: 617 TGVTIVISPLLSLMEDQVSHLQKLKVKAFMINGDTNPEEKSWIMSQLTNAGGEGM-EVLY 675
Query: 266 VCPETVIR---LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGAN 322
+ PE + + LI+ L++L +A IDE HCVS+WGHDFRPDY+ L +R F
Sbjct: 676 ITPEMLSKSQALIRALEKLHGRNRLARLVIDEAHCVSQWGHDFRPDYKELGEVRARFPG- 734
Query: 323 NLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
+P+MALTATAT V+ D++ +L ++ F L SF RPNL + V+
Sbjct: 735 --------VPVMALTATATENVKVDVMHNLKITDCEVF-LQSFNRPNLTYEVR 778
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 104/197 (52%), Gaps = 13/197 (6%)
Query: 516 IIYVPTRKETLSIAKYL-CGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
IIY +RK A+ L + +KA AY+A + + + ++ ++VATIAFGM
Sbjct: 804 IIYCLSRKTCEKTAEDLRTKYRLKAQAYHAGMSATAKTEAQRNWQMGRVHIIVATIAFGM 863
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSED-- 632
GIDK +VR ++H+ P+SLE YYQE GRAGRDG + C LY TL +R D
Sbjct: 864 GIDKADVRFVMHHSIPKSLEGYYQETGRAGRDGKRSGCYLYFGYKDTATL---KRMIDAG 920
Query: 633 -----QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-QLCDVCVDGPP-EM 685
Q + +ML + ++ N S CR ++ YF E F E C CD C G E+
Sbjct: 921 DGNGQQKGRQKQMLRNVVQFCENRSDCRRVQVLAYFAEYFRQEDCNNTCDNCKSGLVFEL 980
Query: 686 KNLKEEANILMQVIAAY 702
+ EEA+ ++++ +
Sbjct: 981 HDFTEEASWAIKIVRQF 997
>gi|77552739|gb|ABA95536.1| ATP-dependent DNA helicase, RecQ family protein, expressed [Oryza
sativa Japonica Group]
Length = 707
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 138/227 (60%), Gaps = 20/227 (8%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W+ + + + FG SS + Q+E ++A ++ D LV+ A G GKSLC+Q+PA+L +
Sbjct: 73 WDSRADDVRFNVFGISSYRQNQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLHDGIT 132
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQ---KAL---RGMYSIIYVCPET 270
+V+SPL+SL+ DQ L+ G+ A L S + +VE+ KAL G I+YV PE
Sbjct: 133 LVVSPLLSLIQDQVMGLAALGIQAYMLAS-TTNKEVEKFVYKALDKGEGELKILYVTPEK 191
Query: 271 VI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
+ R + L++ + ++L AIDE HC S+WGHDFRPDY+ L +L+ F +
Sbjct: 192 ISKSKRFMSKLEKCHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKVQFPS------ 245
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P++ALTATAT +V+ D+++ LH+ + KFV ++ RPNL + V
Sbjct: 246 ---VPMIALTATATNKVQIDLIEMLHIPRCVKFV-STINRPNLFYKV 288
Score = 108 bits (271), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 92/164 (56%), Gaps = 6/164 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RKE +AK L G+ A Y+A + +VH + ++KL+V+V T+AFGMG
Sbjct: 317 IVYCFSRKECEQVAKELSERGILADYYHADMDVISREKVHMRWSKSKLQVIVGTVAFGMG 376
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K +VR +IH+ +S+E YYQE+GRAGRDG ++C+LY +P E+
Sbjct: 377 INKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILYYRPGDVPRQSSMVFYENCGL 436
Query: 636 QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ-LCDVC 678
Q L D RY + CR +FGE + + C +CD C
Sbjct: 437 QN---LYDIVRYCQSKRSCRRGAFFRHFGE--AAQDCNGMCDNC 475
>gi|385813904|ref|YP_005850297.1| ATP-dependent DNA helicase RecQ [Lactobacillus helveticus H10]
gi|323466623|gb|ADX70310.1| ATP-dependent DNA helicase RecQ [Lactobacillus helveticus H10]
Length = 599
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 135/223 (60%), Gaps = 16/223 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK+ FG+SS + QK+ + L + L + TG+GKSLC+Q+PAL+ V +VISPLI
Sbjct: 15 ILKQTFGYSSFRPGQKKVIDLILNRKNVLAVMPTGAGKSLCYQVPALMNEGVTLVISPLI 74
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ L ++G+ A L S P N + ++A G +IY+ PE RL R
Sbjct: 75 SLMKDQIDSLKQNGINAAALNSTTPQEEVNPILRQAYEGKIKLIYITPE---RLAMDYFR 131
Query: 281 LAES-RGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ + L A+DE HC+S+WGHDFRP YR++ G N+LKS ++ALTAT
Sbjct: 132 YQLNFLDVDLVAVDEAHCISQWGHDFRPAYRQIFE-----GINSLKS---KPTILALTAT 183
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
AT V++DI + L++ + F++TSF RPN+ F V +S +++
Sbjct: 184 ATPAVQDDIGQQLNIPQ-ENFIITSFARPNISFKVVNSPQNTQ 225
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 8/192 (4%)
Query: 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571
D IIY TRK+ S+ YL G+ AY+ + + ++ F ++ +V+VAT A
Sbjct: 237 DDAGIIYTNTRKKVESLTDYLAKKGISVGAYHGGMDAKERSQIQEAFQFDEFQVIVATNA 296
Query: 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSR 628
FGMGIDK NVR ++H +++E+YYQEAGRAGRDG ++ V+ +L +
Sbjct: 297 FGMGIDKSNVRFVVHASSARNIESYYQEAGRAGRDGEESEAVMIYHPGDLHQYRYFIEES 356
Query: 629 RSEDQTKQ-AYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKN 687
++ + K+ Y+ L Y +NT C + +V YFG+D C C C++ ++KN
Sbjct: 357 DADQKYKELQYQKLQAITDY-VNTGECLQQFIVRYFGQDCP--PCGKCSNCLN-QGDLKN 412
Query: 688 LKEEANILMQVI 699
+ +A ++ ++
Sbjct: 413 ITTDAQKVIALV 424
>gi|22124312|ref|NP_667735.1| ATP-dependent DNA helicase RecQ [Yersinia pestis KIM10+]
gi|45442967|ref|NP_994506.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Microtus
str. 91001]
gi|51594557|ref|YP_068748.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis IP
32953]
gi|108806187|ref|YP_650103.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Antiqua]
gi|108810297|ref|YP_646064.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Nepal516]
gi|145600700|ref|YP_001164776.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Pestoides F]
gi|153947607|ref|YP_001399215.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis IP
31758]
gi|153997111|ref|ZP_02022244.1| ATP-dependent DNA helicase [Yersinia pestis CA88-4125]
gi|162418857|ref|YP_001605148.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Angola]
gi|165926240|ref|ZP_02222072.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165939115|ref|ZP_02227666.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. IP275]
gi|166011675|ref|ZP_02232573.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166213635|ref|ZP_02239670.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167401854|ref|ZP_02307342.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167421077|ref|ZP_02312830.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167426281|ref|ZP_02318034.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|167469646|ref|ZP_02334350.1| ATP-dependent DNA helicase RecQ [Yersinia pestis FV-1]
gi|218930836|ref|YP_002348711.1| ATP-dependent DNA helicase RecQ [Yersinia pestis CO92]
gi|229837162|ref|ZP_04457327.1| ATP-dependent DNA helicase [Yersinia pestis Pestoides A]
gi|229839522|ref|ZP_04459681.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229900085|ref|ZP_04515222.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229900469|ref|ZP_04515598.1| ATP-dependent DNA helicase [Yersinia pestis Nepal516]
gi|270488824|ref|ZP_06205898.1| ATP-dependent DNA helicase RecQ [Yersinia pestis KIM D27]
gi|294505497|ref|YP_003569559.1| ATP-dependent DNA helicase [Yersinia pestis Z176003]
gi|384123966|ref|YP_005506586.1| ATP-dependent DNA helicase [Yersinia pestis D106004]
gi|384127827|ref|YP_005510441.1| ATP-dependent DNA helicase [Yersinia pestis D182038]
gi|384138308|ref|YP_005521010.1| ATP-dependent DNA helicase RecQ [Yersinia pestis A1122]
gi|384413065|ref|YP_005622427.1| ATP-dependent DNA helicase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|420549046|ref|ZP_15046797.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-01]
gi|420554379|ref|ZP_15051553.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-02]
gi|420560006|ref|ZP_15056434.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-03]
gi|420565382|ref|ZP_15061272.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-04]
gi|420581390|ref|ZP_15075799.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-07]
gi|420586787|ref|ZP_15080681.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-08]
gi|420591869|ref|ZP_15085252.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-09]
gi|420597248|ref|ZP_15090090.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-10]
gi|420602944|ref|ZP_15095145.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-11]
gi|420608335|ref|ZP_15100039.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-12]
gi|420613725|ref|ZP_15104865.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-13]
gi|420619086|ref|ZP_15109540.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-14]
gi|420624397|ref|ZP_15114328.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-15]
gi|420629378|ref|ZP_15118846.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-16]
gi|420639815|ref|ZP_15128223.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-25]
gi|420645253|ref|ZP_15133196.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-29]
gi|420650581|ref|ZP_15137995.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-32]
gi|420661646|ref|ZP_15147913.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-36]
gi|420666997|ref|ZP_15152736.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-42]
gi|420671856|ref|ZP_15157169.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-45]
gi|420682761|ref|ZP_15167043.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-47]
gi|420688171|ref|ZP_15171857.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-48]
gi|420693441|ref|ZP_15176465.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-52]
gi|420699163|ref|ZP_15181511.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-53]
gi|420705063|ref|ZP_15186161.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-54]
gi|420710327|ref|ZP_15190893.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-55]
gi|420721372|ref|ZP_15200506.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-58]
gi|420726804|ref|ZP_15205306.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-59]
gi|420732302|ref|ZP_15210251.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-60]
gi|420737293|ref|ZP_15214760.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-61]
gi|420742774|ref|ZP_15219685.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-63]
gi|420753919|ref|ZP_15229361.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-65]
gi|420765089|ref|ZP_15238752.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-71]
gi|420780906|ref|ZP_15252870.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-88]
gi|420797138|ref|ZP_15267335.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-91]
gi|420802233|ref|ZP_15271911.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-92]
gi|420812973|ref|ZP_15281585.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-94]
gi|420818445|ref|ZP_15286557.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-95]
gi|420823785|ref|ZP_15291325.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-96]
gi|420828848|ref|ZP_15295891.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-98]
gi|420834430|ref|ZP_15300927.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-99]
gi|420839377|ref|ZP_15305399.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-100]
gi|420844579|ref|ZP_15310118.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-101]
gi|420850225|ref|ZP_15315189.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-102]
gi|420855965|ref|ZP_15320020.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-103]
gi|420861052|ref|ZP_15324517.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-113]
gi|421765358|ref|ZP_16202143.1| ATP-dependent DNA helicase RecQ [Yersinia pestis INS]
gi|21957085|gb|AAM83986.1|AE013640_5 ATP-dependent DNA helicase [Yersinia pestis KIM10+]
gi|45437834|gb|AAS63383.1| ATP-dependent DNA helicase [Yersinia pestis biovar Microtus str.
91001]
gi|51587839|emb|CAH19442.1| ATP-dependent DNA helicase [Yersinia pseudotuberculosis IP 32953]
gi|108773945|gb|ABG16464.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Nepal516]
gi|108778100|gb|ABG12158.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Antiqua]
gi|115349447|emb|CAL22420.1| ATP-dependent DNA helicase [Yersinia pestis CO92]
gi|145212396|gb|ABP41803.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Pestoides F]
gi|149289417|gb|EDM39495.1| ATP-dependent DNA helicase [Yersinia pestis CA88-4125]
gi|152959102|gb|ABS46563.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis IP
31758]
gi|162351672|gb|ABX85620.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Angola]
gi|165912888|gb|EDR31514.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. IP275]
gi|165921764|gb|EDR38961.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165989444|gb|EDR41745.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166205308|gb|EDR49788.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166961206|gb|EDR57227.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167048747|gb|EDR60155.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167054800|gb|EDR64604.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|229682488|gb|EEO78575.1| ATP-dependent DNA helicase [Yersinia pestis Nepal516]
gi|229686865|gb|EEO78944.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229695888|gb|EEO85935.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229706105|gb|EEO92114.1| ATP-dependent DNA helicase [Yersinia pestis Pestoides A]
gi|262363562|gb|ACY60283.1| ATP-dependent DNA helicase [Yersinia pestis D106004]
gi|262367491|gb|ACY64048.1| ATP-dependent DNA helicase [Yersinia pestis D182038]
gi|270337328|gb|EFA48105.1| ATP-dependent DNA helicase RecQ [Yersinia pestis KIM D27]
gi|294355956|gb|ADE66297.1| ATP-dependent DNA helicase [Yersinia pestis Z176003]
gi|320013569|gb|ADV97140.1| ATP-dependent DNA helicase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|342853437|gb|AEL71990.1| ATP-dependent DNA helicase RecQ [Yersinia pestis A1122]
gi|391421158|gb|EIQ83878.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-01]
gi|391421371|gb|EIQ84073.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-02]
gi|391421448|gb|EIQ84143.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-03]
gi|391436188|gb|EIQ97169.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-04]
gi|391453252|gb|EIR12582.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-07]
gi|391453411|gb|EIR12729.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-08]
gi|391455260|gb|EIR14393.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-09]
gi|391469060|gb|EIR26879.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-10]
gi|391469818|gb|EIR27555.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-11]
gi|391471272|gb|EIR28850.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-12]
gi|391484954|gb|EIR41152.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-13]
gi|391486455|gb|EIR42485.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-15]
gi|391486548|gb|EIR42569.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-14]
gi|391501084|gb|EIR55520.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-16]
gi|391506158|gb|EIR60104.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-25]
gi|391517115|gb|EIR69950.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-29]
gi|391518917|gb|EIR71596.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-32]
gi|391531438|gb|EIR82932.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-36]
gi|391534305|gb|EIR85494.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-42]
gi|391536661|gb|EIR87623.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-45]
gi|391550077|gb|EIR99727.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-47]
gi|391550347|gb|EIR99969.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-48]
gi|391564613|gb|EIS12805.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-52]
gi|391566044|gb|EIS14081.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-53]
gi|391569386|gb|EIS16980.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-54]
gi|391579599|gb|EIS25700.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-55]
gi|391591637|gb|EIS36175.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-58]
gi|391595137|gb|EIS39212.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-60]
gi|391595868|gb|EIS39867.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-59]
gi|391609696|gb|EIS52066.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-61]
gi|391610048|gb|EIS52385.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-63]
gi|391623135|gb|EIS63973.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-65]
gi|391633409|gb|EIS72815.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-71]
gi|391648413|gb|EIS85930.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-88]
gi|391666018|gb|EIT01535.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-91]
gi|391675612|gb|EIT10109.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-92]
gi|391675850|gb|EIT10329.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-94]
gi|391689548|gb|EIT22669.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-95]
gi|391691498|gb|EIT24422.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-96]
gi|391693223|gb|EIT25990.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-98]
gi|391706602|gb|EIT38024.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-99]
gi|391707573|gb|EIT38908.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-100]
gi|391710357|gb|EIT41433.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-101]
gi|391722570|gb|EIT52360.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-102]
gi|391722697|gb|EIT52473.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-103]
gi|391723511|gb|EIT53184.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-113]
gi|411173338|gb|EKS43383.1| ATP-dependent DNA helicase RecQ [Yersinia pestis INS]
Length = 610
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 137/222 (61%), Gaps = 19/222 (8%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
E+ +L+ FG+ + Q+E ++A L+ DCLV+ TG GKSLC+QIPAL+T + +
Sbjct: 10 ELLAVQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTL 69
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL-----RGMYSIIYVCPETVI 272
V+SPLISLM DQ +L +GV A L S Q + +Q A+ G ++Y+ PE ++
Sbjct: 70 VVSPLISLMKDQVDQLLAYGVGAGCLNSSQ--TREQQLAVMDGCRSGQIKLLYIAPERLV 127
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
+ L +L + R AL A+DE HC+S+WGHDFRP+YR L L++ F D+P
Sbjct: 128 -MESFLDQLYQWRP-ALLAVDEAHCISQWGHDFRPEYRALGQLKQRFP---------DLP 176
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++ALTATA R DI++ L++ + ++SF RPN+R+++
Sbjct: 177 VIALTATADEATRGDIVRLLNLDQPL-IQISSFDRPNIRYTL 217
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 99/187 (52%), Gaps = 13/187 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R + L G+ AAY+A L + +V F + L+VVVAT+AFGMG
Sbjct: 240 IIYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ VL + + M L RR ++
Sbjct: 300 INKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWL---RRCLEEKP 356
Query: 636 QAYRMLSDCFRYGMN-------TSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
+ D R+ +N CR +L+ YFGE + C CD+C+D P L
Sbjct: 357 AGAQ--QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEG-KQQPCGNCDICLDPPKRYDGL 413
Query: 689 KEEANIL 695
+ L
Sbjct: 414 ADAQKAL 420
>gi|39937884|ref|NP_950160.1| DNA helicase [Rhodopseudomonas palustris CGA009]
gi|39651744|emb|CAE30266.1| DNA helicase [Rhodopseudomonas palustris CGA009]
Length = 616
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 135/225 (60%), Gaps = 21/225 (9%)
Query: 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALLTGK 214
D + + S+L FG S + Q+EA+ +A D LVL TG GKSLC+Q+PALL
Sbjct: 12 DLDARALSVLNHVFGLPSFRG-QQEAIVRHVADGGDALVLMPTGGGKSLCYQLPALLREG 70
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETV 271
VV+SPLI+LM DQ + L + GV A L S N +EQ+ L+G ++YV PE
Sbjct: 71 CGVVVSPLIALMRDQVAGLLESGVRAAALNSTLSYDEANDIEQQLLKGELDLLYVAPE-- 128
Query: 272 IRLIKP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKF 329
RL+ P L LA ++ I+LFAIDE HCVS+WGHDFRP+Y LS + E F
Sbjct: 129 -RLLTPRCLSLLARAK-ISLFAIDEAHCVSQWGHDFRPEYVGLSAIAEKFP--------- 177
Query: 330 DIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++P +ALTATA R +I + L ++ FV +SF RPN+R+S+
Sbjct: 178 NVPRIALTATADALTRREIAERLSLTDAPCFV-SSFDRPNIRYSI 221
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 103/199 (51%), Gaps = 10/199 (5%)
Query: 493 TDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLR 552
D N PA+ + + + ++Y +R + IA+ L G+ A Y+A LP
Sbjct: 222 VDKQNAPAQLKAFIDDRHRGHSGVVYCLSRAKVEDIAETLSKSGLTALPYHAGLPPDVRA 281
Query: 553 RVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC 612
R F V+VATIAFGMGIDK +VR + H P+S+EAYYQE GRAGRDG ++
Sbjct: 282 RNQDRFLNEDGIVIVATIAFGMGIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGKPSEA 341
Query: 613 VLYANLSSMPTLLPSRRSEDQT--KQAYRMLS----DCFRYGMNTSCCRAKILVEYFGED 666
+ LS ++ RR D++ A++ +S D ++ CR L+ YFGE
Sbjct: 342 WMAYGLSD---IVQQRRMIDESSGSDAFKRVSMGKLDALVGLCESTGCRRTRLLGYFGET 398
Query: 667 FSHEKCQLCDVCVDGPPEM 685
HE C CD C+ PP++
Sbjct: 399 AQHESCGNCDNCLT-PPKV 416
>gi|163754961|ref|ZP_02162082.1| ATP-dependent DNA helicase recQ [Kordia algicida OT-1]
gi|161325028|gb|EDP96356.1| ATP-dependent DNA helicase recQ [Kordia algicida OT-1]
Length = 700
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 129/216 (59%), Gaps = 21/216 (9%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK++FG+ + + Q+E +++ + D LV+ TG GKS+CFQ+PA+L + +VISPLI+
Sbjct: 11 LKEYFGYDTFRPLQEEIINSIFSGKDNLVIMPTGGGKSICFQLPAILLEGLTIVISPLIA 70
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL-----RGMYSIIYVCPETVIRLIKPLQ 279
LM DQ L+ +G+ A +L S Q + +EQ+A+ G ++Y PE+ + L+
Sbjct: 71 LMKDQVDGLTTNGIAAAYLNSSQTE--IEQQAIYSEIDAGKIKLLYTAPES----LSYLE 124
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+ S+ I+L AIDE HC+S WGHDFRP Y L L++ F + IP++ALTAT
Sbjct: 125 HIFSSQKISLIAIDEAHCISSWGHDFRPAYTNLGYLKKRFPS---------IPVIALTAT 175
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
A REDI L++ + + SF R NL+ V+
Sbjct: 176 ADKATREDIANQLNIPHAKQHI-ASFDRKNLKLEVR 210
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 118/214 (55%), Gaps = 14/214 (6%)
Query: 480 PHRDRDTDRSFERTDLL--NKPA-----ERLSMLQE-PLEDGLTIIYVPTRKETLSIAKY 531
PH + SF+R +L +PA + +S + E P E G IIY +RK T ++A+
Sbjct: 191 PHAKQHI-ASFDRKNLKLEVRPANDRVKQIISFIDERPTESG--IIYCLSRKATETVAEK 247
Query: 532 LCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ 591
L + A AY+A + ++ ++ +F + +V+ ATIAFGMGIDK NVR +IHY P+
Sbjct: 248 LQNANINAIAYHAGIAHTKRSKIQEDFINDTCQVICATIAFGMGIDKSNVRWVIHYNLPK 307
Query: 592 SLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNT 651
++E YYQE GRAGRDG ++ +L+ + + + L S + L Y +
Sbjct: 308 NIEGYYQEIGRAGRDGLPSNTLLFHSYADVIQLKKFAESSGNVEVQLAKLDRMKEYA-DA 366
Query: 652 SCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEM 685
CR KIL+ YFGE S E C CDVC + PP+
Sbjct: 367 LSCRRKILLSYFGELIS-EDCGNCDVC-NNPPQF 398
>gi|146338225|ref|YP_001203273.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. ORS 278]
gi|146191031|emb|CAL75036.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. ORS 278]
Length = 624
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 131/224 (58%), Gaps = 17/224 (7%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
+D + ++L FG + Q++ + +CLVL TG GKSLC+Q+PALL
Sbjct: 9 TDTADRALAVLHSVFGLPGFRGAQEKVVRHVAEGGNCLVLMPTGGGKSLCYQLPALLRKG 68
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETV 271
+V+SPLI+LM DQ + L + GV A L S + ++VE++ + G ++YV PE
Sbjct: 69 CGIVVSPLIALMRDQVAGLIEAGVNAAVLNSTLSREEADEVERRLIVGDLDLLYVAPE-- 126
Query: 272 IRLIKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
RL+ P L E IALFAIDE HCVS+WGHDFRP+Y LS++ E F D
Sbjct: 127 -RLVTPRCLSLLERAEIALFAIDEAHCVSQWGHDFRPEYIGLSIIAERFP---------D 176
Query: 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+P +ALTATA R++I + L +S +FV SF RPN+R+ +
Sbjct: 177 VPRIALTATADELTRKEIAERLSLSDAPQFV-ASFDRPNIRYEI 219
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 141/290 (48%), Gaps = 20/290 (6%)
Query: 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
DR R +E D N PA+ + ++E ++Y +R + A L G+ A Y
Sbjct: 211 DRPNIR-YEIVDKNNGPAQLKAFIKERHPGDAGVVYCLSRAKVEDTAAALNEAGITAIPY 269
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L + R F VVVAT+AFGMGIDK +VR + H P+S+EAYYQE GR
Sbjct: 270 HAGLDPAVRSRNQDRFINEDGVVVVATVAFGMGIDKPDVRFVAHLDLPKSIEAYYQETGR 329
Query: 603 AGRDGHLADCVLYANLSSMPTLLPSRRSEDQT--KQAYRMLS----DCFRYGMNTSCCRA 656
AGRDG + + LS ++ RR D++ +AY+ +S D T+ CR
Sbjct: 330 AGRDGKASTAWMAYGLSD---IVQQRRMIDESTGAEAYKRMSIRKLDALVALAETAGCRR 386
Query: 657 KILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIY 716
K+L+ YFGE + E C CD CV PP+M++ K A L+ ++ +M D +
Sbjct: 387 KLLLSYFGESPAGENCGNCDNCVS-PPKMRDGKVIAQKLLSCAYRTGQRFGAMHLID-VL 444
Query: 717 SGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYI 765
G ++ + ++ V I RE ++K WR R + GY+
Sbjct: 445 VGRATERVKQFGHDQLSVFGIGREMNEK-------QWRAALRQLVAMGYL 487
>gi|374629362|ref|ZP_09701747.1| ATP-dependent DNA helicase, RecQ family [Methanoplanus limicola DSM
2279]
gi|373907475|gb|EHQ35579.1| ATP-dependent DNA helicase, RecQ family [Methanoplanus limicola DSM
2279]
Length = 1165
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 128/221 (57%), Gaps = 18/221 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK+ FGHS FQK+ + L D L + ATGSGKS+C+Q+PALL + +VISPL
Sbjct: 18 ILKEKFGHSEFLPFQKKIIDDILNGRDTLGILATGSGKSICYQLPALLLDGITLVISPLK 77
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDN--KVEQKALRGMYSIIYVCPETVIR--LIKPLQ 279
+LM DQ L +G+ + S +++++A I++V PE V I L+
Sbjct: 78 ALMKDQVDNLKINGIPVATINSSNYGKHWEIKKRAENQEIKILFVSPERVTNNDFISFLK 137
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
+L I+L A+DE HC+S WGH+FRP+YR + VLR+ F D+P++ALTAT
Sbjct: 138 KLK----ISLIAVDEAHCISMWGHNFRPEYREIRVLRDTFP---------DVPIIALTAT 184
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380
A +VR DI+K L + +V SF R NL + VK K +
Sbjct: 185 AIPEVRNDIIKQLELRDPNVYV-GSFNRENLYYYVKEKKKA 224
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 111/189 (58%), Gaps = 7/189 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK T IA +L G A ++A+L + R EF K ++ +T+AFGMG
Sbjct: 241 IIYCLSRKTTEEIAGFLRNNGFNAKPFHANLQEDVKRETQEEFLYGKTPIICSTVAFGMG 300
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL---SSMPTLLPSRRSED 632
+DK ++R +IHY P+ LE+YYQE GRAGRD +DC+ + +L S + ++ S +
Sbjct: 301 VDKPDIRFVIHYDPPKDLESYYQETGRAGRDRENSDCIFFYSLGDFSKIRNMVYEENSGN 360
Query: 633 QTKQAYRM--LSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKE 690
+++ M ++D + TS CR K L+ YFGED++ E C CD C++ P ++ N K+
Sbjct: 361 SGRRSIAMKRINDLINF-CETSQCRRKYLLSYFGEDYNEEPCPGCDNCINRPEKI-NGKD 418
Query: 691 EANILMQVI 699
AN++ +
Sbjct: 419 VANLVYNCL 427
>gi|410455550|ref|ZP_11309427.1| ATP-dependent DNA helicase RecQ [Bacillus bataviensis LMG 21833]
gi|409929031|gb|EKN66121.1| ATP-dependent DNA helicase RecQ [Bacillus bataviensis LMG 21833]
Length = 709
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 136/235 (57%), Gaps = 20/235 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K LL+ HFG+S+ +N Q++A+ + LA + + + TG GKS+C+QIPAL+ +VI
Sbjct: 4 KALPLLESHFGYSTFRNGQEQAIRSVLAQENTICVMPTGGGKSICYQIPALVLPGTTIVI 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETV--IRL 274
SPLISLM DQ L + G+ A F+ S NK +A +G Y ++Y+ PE +
Sbjct: 64 SPLISLMKDQVDALIQVGIPATFINSSLSYSEANKRIYEAKQGKYKLLYIAPERLESYEF 123
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
++ L+ S I L A+DE HC+S+WGHDFRP YR + + NNL ++
Sbjct: 124 VEDLR----SMEIPLVAVDEAHCISQWGHDFRPSYRHIQQM-----VNNLPQRP---NVL 171
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDF 389
ALTATAT +VREDI L++ + ++T F R NL F+V K R + KD+
Sbjct: 172 ALTATATPKVREDICHLLNIDERNT-IITGFERENLSFAV--IKGQDRQKFLKDY 223
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 116/221 (52%), Gaps = 16/221 (7%)
Query: 490 FERTDL---LNKPAERLSMLQEPL---EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYN 543
FER +L + K +R L++ L E IIY TRK + + L + A Y+
Sbjct: 201 FERENLSFAVIKGQDRQKFLKDYLKKNEQEAGIIYAATRKNVDQLYEKLRKENINVARYH 260
Query: 544 ASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRA 603
A + + R F E+K V+VAT AFGMGIDK N+R ++HY P+++E+YYQEAGRA
Sbjct: 261 AGMGDADRAREQERFLEDKASVMVATSAFGMGIDKSNIRYVVHYQMPKNMESYYQEAGRA 320
Query: 604 GRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGM-----NTSCCRAKI 658
GRDG ++C++ L S + R DQ+ R+ + + +T C +
Sbjct: 321 GRDGLESECIM---LYSPQDVQVQRFLIDQSSDRSRITQELEKLQQMADYCHTENCLQEF 377
Query: 659 LVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
+++YFGE + C C C+D + ++ +EA ++M +
Sbjct: 378 ILKYFGET-ETDDCGRCGNCLDSRTSI-DVTKEAQMVMSCV 416
>gi|395648579|ref|ZP_10436429.1| ATP-dependent DNA helicase RecQ [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 708
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 130/220 (59%), Gaps = 19/220 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIKRGEVKMLYLAPE---RLVQ 120
Query: 277 PLQRLAESRG--IALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
P + LA +G IALFAIDE HCVS+WGHDFR +Y +L L E F D+P +
Sbjct: 121 P-RMLAFLQGLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFP---------DVPRI 170
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA + RE+I++ LH+ +F L+SF RPN+ + +
Sbjct: 171 ALTATADKRTREEIVERLHLQNAERF-LSSFDRPNIFYRI 209
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 105/203 (51%), Gaps = 12/203 (5%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +LC G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLSERRSDA-GIVYCLSRKKVDEVAAFLCEQGYPALP 257
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A LP F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE G
Sbjct: 258 YHAGLPNETRSAHQKRFLNEEGLIMVATIAFGMGIDKSNVRFVAHMDLPKSLEAYYQETG 317
Query: 602 RAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 318 RAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQT 377
Query: 659 LVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED E C CD CVDG
Sbjct: 378 LLAYFDEDMP-EPCGHCDNCVDG 399
>gi|383768835|ref|YP_005447898.1| ATP-dependent DNA helicase [Bradyrhizobium sp. S23321]
gi|381356956|dbj|BAL73786.1| ATP-dependent DNA helicase [Bradyrhizobium sp. S23321]
Length = 621
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 138/234 (58%), Gaps = 21/234 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
S+L FG + Q E + +CLVL TG GKSLC+Q+P+LL +V+SPL
Sbjct: 20 SVLHSVFGLPGFRGAQGEIIRHVTNGGNCLVLMPTGGGKSLCYQLPSLLREGCGIVVSPL 79
Query: 223 ISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETVIRLIKP-- 277
I+LM DQ + L + GV A L S Q + +E++ + G ++YV PE RL+ P
Sbjct: 80 IALMRDQVAGLLEAGVNAAALNSSLTLQEASDIERRLIAGDLDLLYVAPE---RLVTPRC 136
Query: 278 LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALT 337
L LA+++ +ALFAIDE HCVS+WGHDFRP+Y LSV+ E F ++P +ALT
Sbjct: 137 LSMLAQAK-VALFAIDEAHCVSQWGHDFRPEYVGLSVIAERFP---------NVPRIALT 186
Query: 338 ATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQ 391
ATA R++I++ L + +FV +SF RPN+R+ + + + S K+F +
Sbjct: 187 ATADDLTRKEIVERLQLGGSPQFV-SSFDRPNIRYEIVDKRNA--VSQLKEFIR 237
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 135/297 (45%), Gaps = 16/297 (5%)
Query: 477 GHSPHRDRDTDRS---FERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLC 533
G SP DR +E D N ++ ++E ++Y +R +A L
Sbjct: 204 GGSPQFVSSFDRPNIRYEIVDKRNAVSQLKEFIRERHAGDAGVVYCLSRNRVEEVAAALA 263
Query: 534 GFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSL 593
G+ A Y+A L S R F V+VATIAFGMGIDK +VR + H P+S+
Sbjct: 264 DAGIAALPYHAGLDSSVRSRNQDRFLNEDGIVIVATIAFGMGIDKPDVRFVAHLDLPKSI 323
Query: 594 EAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPSRRSEDQTKQAYRMLSDCFRYGMN 650
EAYYQE GRAGRDG + + LS + ++ + D K+A D
Sbjct: 324 EAYYQETGRAGRDGKPSAAWMAYGLSDIVQQRRMIDESTASDDFKRASIGKLDALVGLAE 383
Query: 651 TSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMD 710
T+ CR K L+ YFGE C CD C+ PP+M++ K A L+ ++ +M
Sbjct: 384 TAQCRRKRLLGYFGETLDGANCGNCDNCLT-PPQMRDGKVLAQKLLSCAYRTGQRFGAMH 442
Query: 711 DDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIR 766
D + G +K + K+ V I RE ++K WR + R + G+++
Sbjct: 443 LID-VLIGRLTEKVTQFGHDKLSVFGIGRELNEKQ-------WRTVLRQLVAMGHLQ 491
>gi|242022338|ref|XP_002431597.1| ATP-dependent DNA helicase Q1, putative [Pediculus humanus
corporis]
gi|212516905|gb|EEB18859.1| ATP-dependent DNA helicase Q1, putative [Pediculus humanus
corporis]
Length = 652
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 130/226 (57%), Gaps = 18/226 (7%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W KV++LLK++F S + FQ E ++A L+ D +++ TG GKSLC+Q+PAL+ +
Sbjct: 66 WSQKVDNLLKENFKISEFRPFQLEVINATLSKEDVILIMPTGGGKSLCYQLPALVDKGIT 125
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFL--GSGQPDNKVEQKALRG---MYSIIYVCPETV 271
+V+SPL+SLM DQ L K A L S + D K+ AL+ + +IYV PE +
Sbjct: 126 LVVSPLVSLMEDQVMALKKINYPALMLSANSSKEDVKLVTAALQDSCPKHKLIYVTPEKL 185
Query: 272 I---RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328
R + LQ+ + AIDEVHC S WGHDFRPDY L +L++ F
Sbjct: 186 AKSKRFMSQLQKCHQQGRFTRLAIDEVHCCSTWGHDFRPDYNYLGILKDMFPG------- 238
Query: 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+PL+ LTAT+T +V D+ K L++ +G + +F RPNL + V
Sbjct: 239 --VPLLGLTATSTSKVTADVQKMLNI-QGCLVIKATFNRPNLYYEV 281
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 112/197 (56%), Gaps = 14/197 (7%)
Query: 500 AERLSMLQEPLEDGLT----IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH 555
+E L +L+ L++ + IIY KE + K L G+KA Y+A L ++H
Sbjct: 289 SENLDLLENWLKNKFSNKSGIIYTTAIKECEELTKELRKRGIKAGVYHAMLDAEVRSKMH 348
Query: 556 TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615
T++ N+ +V+VAT+AFGMGIDK +VR +IH+ +S+E +YQE+GRAGRDG + C++
Sbjct: 349 TKWMSNEYQVIVATVAFGMGIDKPDVRFVIHHSLSKSMENFYQESGRAGRDGKNSHCIVM 408
Query: 616 ANLSSMPTLLPSRRSEDQ-TKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKC-Q 673
L+ + L ++ + + Y ML+ C +N CR ++ E+F E ++ C +
Sbjct: 409 FRLADVFKLSTMVFTQQKGLENLYSMLNFC----LNNDTCRRSLIAEHFDEVWNSNFCNK 464
Query: 674 LCDVCVDGPPEMKNLKE 690
+CD C + P N KE
Sbjct: 465 MCDHCKEEP----NFKE 477
>gi|17366086|sp|Q9I920.1|BLM_CHICK RecName: Full=Bloom syndrome protein homolog; AltName: Full=RecQ
helicase homolog
gi|8567899|dbj|BAA96742.1| Gd BLM [Gallus gallus]
Length = 1142
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 127/219 (57%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ + FG S + Q EA++A L DC +L TG GKSLC+Q+PA ++ V VVISPL
Sbjct: 388 IFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLR 447
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL + A +L D + ++ + ++YV PE V RL+
Sbjct: 448 SLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASNRLL 507
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L + + +A F IDE HCVS+WGHDFR DY+RL++LR+ F + +P+MA
Sbjct: 508 SALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHS---------VPMMA 558
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DI L M K F + SF R NL++ V
Sbjct: 559 LTATANPRVQKDIQNQLEMLKPQVFTM-SFNRHNLKYDV 596
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 112/216 (51%), Gaps = 13/216 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF-HENKLEVVVATIAFGM 574
IIY +R E + A L G+ A AY+A L S V ++ ++ +V+ ATIAFGM
Sbjct: 622 IIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATIAFGM 681
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL----LPSRRS 630
GIDK +VR +IH P+S+E YY E+GRAGRDG ++ C+L+ + S + L L +
Sbjct: 682 GIDKPDVRYVIHASLPKSVEGYYHESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDG 741
Query: 631 EDQTKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGE-DFSHEKCQ-----LCDVC-VDGP 682
T+Q + L Y N CR L+ YFGE DF+ C+ +CD C
Sbjct: 742 NSHTRQTHFNNLYSMVHYCENVVDCRRIQLLAYFGETDFNPNFCKDHPEVICDNCSTKKD 801
Query: 683 PEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSG 718
+ +N+ +E +++ + + Q ++ + SG
Sbjct: 802 YKSRNVTDEVKSIIRFVQQHCGQMGGINGNRNTGSG 837
>gi|392969325|ref|ZP_10334740.1| ATP-dependent DNA helicase RecQ [Fibrisoma limi BUZ 3]
gi|387841519|emb|CCH56798.1| ATP-dependent DNA helicase RecQ [Fibrisoma limi BUZ 3]
Length = 736
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 136/220 (61%), Gaps = 15/220 (6%)
Query: 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218
V + LK+ FG+S + Q+ + + LA + V+ TG+GKSLC+Q+PA+++ +V
Sbjct: 10 VTLKERLKEIFGYSQFRGDQEAIIHSILAGRNTFVIMPTGAGKSLCYQLPAIVSDGTAIV 69
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLI 275
ISPLI+LM +Q +L+ G+ A FL S NKV++ L G ++Y+ PE++ +
Sbjct: 70 ISPLIALMKNQVDQLNAFGINAQFLNSTLSKAEMNKVKKDTLSGSLKLLYIAPESLTKE- 128
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
+ L L ++ I+ AIDE HC+S+WGHDFRP+YR++ + +N G ++P++A
Sbjct: 129 ENLDFLKKA-NISFVAIDEAHCISEWGHDFRPEYRKIRGIVDNIG---------NLPVIA 178
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
LTATAT +V++DI K+L M + +SF R NL + +K
Sbjct: 179 LTATATPKVQQDIQKNLQMEDANLYK-SSFNRKNLYYEIK 217
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 100/186 (53%), Gaps = 4/186 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +RK IA+ L +KA Y+A L F +++V+VATIAFGMG
Sbjct: 239 IVYCLSRKTVEDIAELLNVNDIKALPYHAGLDPLTRMNNQDAFLNEEVDVIVATIAFGMG 298
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR +IHY P+SLE YYQE GRAGRDG +CV++ + + L + + T+
Sbjct: 299 IDKPDVRFVIHYDAPKSLEGYYQETGRAGRDGLEGNCVMFYSYDDIVKLEKFNKDKPVTE 358
Query: 636 Q--AYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEAN 693
+ A +L++ Y N CR + L+ YFGE F + C CD C+ + K E
Sbjct: 359 RDNAKHLLTEMVSYA-NLGVCRRRQLLSYFGE-FLDKDCGFCDNCLKSTEKFKAQDEVVL 416
Query: 694 ILMQVI 699
L V+
Sbjct: 417 ALQSVL 422
>gi|323527608|ref|YP_004229761.1| ATP-dependent DNA helicase RecQ [Burkholderia sp. CCGE1001]
gi|323384610|gb|ADX56701.1| ATP-dependent DNA helicase RecQ [Burkholderia sp. CCGE1001]
Length = 615
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 130/219 (59%), Gaps = 21/219 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVI 219
+L + FG+ + + Q E + DCLVL TG GKSLC+QIP+L+ + +V+
Sbjct: 7 ILNEVFGYPAFRGQQGEIVEHVAGGGDCLVLMPTGGGKSLCYQIPSLVRRERGFGTGIVV 66
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L++ GV A +L S + ++ALR G ++YV PE RL+
Sbjct: 67 SPLIALMQDQVAALTEVGVRAAYLNSTLSSAEAMATERALRDGDIDLLYVAPE---RLMT 123
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P Q L E I LFAIDE HCVS+WGHDFRP+Y +LSVL E F ++P +A
Sbjct: 124 PRFQELLERTRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------NVPRIA 174
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA R++I+ L + FV +SF RPN+R+ +
Sbjct: 175 LTATADAITRDEIIHRLALDDARIFV-SSFDRPNIRYRI 212
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVV 567
DG T ++Y +R++ A++L G++A Y+A + + + R+ H E F + V+
Sbjct: 234 DGTTDAGVVYCLSRRKVEETAEWLKEKGMRALPYHAGM-EFETRQKHQEMFQREEGIVMC 292
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG ++ + L + +
Sbjct: 293 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPSNAWMAYGLGDVVQQRKM 352
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D + CR L+ YFGE + + C CD C++ PP
Sbjct: 353 IDESDADDAHKRVQTGKLDALLGLCEAATCRRVRLLAYFGE--ASKPCGNCDNCLE-PPA 409
Query: 685 MKNLKEEANILM------QVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIR 738
+ EA + + Q + +N + + D I G + +K + R + K+ I
Sbjct: 410 TWDATREAQMALSCVFRAQRASGFNFGAGHLID---ILRGNRSEKILQRGHEKLTTFGIG 466
Query: 739 EQSQKYLATDLLWWRGLARIMENKGYI 765
A WR + R + GY+
Sbjct: 467 A------ALGEPEWRAVFRQLVAFGYL 487
>gi|170701422|ref|ZP_02892380.1| ATP-dependent DNA helicase RecQ [Burkholderia ambifaria IOP40-10]
gi|170133674|gb|EDT02044.1| ATP-dependent DNA helicase RecQ [Burkholderia ambifaria IOP40-10]
Length = 652
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 132/220 (60%), Gaps = 23/220 (10%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV----VVI 219
+L + FG+S+ + Q E + DCLVL TG GKSLC+QIPALL + +V+
Sbjct: 44 ILDEVFGYSAFRGQQGEIVEHVAGGGDCLVLMPTGGGKSLCYQIPALLRREAGQGAGIVV 103
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVI--RL 274
SPLI+LM DQ + LS+ GV A +L S + ++ALR G ++YV PE ++ R
Sbjct: 104 SPLIALMQDQVAALSEVGVRAAYLNSTLSGAEAAATERALREGEIDLLYVAPERLMTGRF 163
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
++ L+R I LFAIDE HCVS+WGHDFRP+Y +LSVL E F + +P +
Sbjct: 164 LELLERAR----IGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPS---------VPRI 210
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA R++I+ L + FV +SF RPN+R+ +
Sbjct: 211 ALTATADAITRDEIIHRLALDDARVFV-SSFDRPNIRYRI 249
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 105/195 (53%), Gaps = 11/195 (5%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVV- 567
DG T ++Y +R++ A++L GV+A Y+A + + ++R+ H E + + VV+
Sbjct: 271 DGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGM-EFEVRQKHQEMFQREEGVVMC 329
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 330 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKM 389
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D T CR L+ YFGE + + C CD C++ PP+
Sbjct: 390 IDESDADDAHKRVQTSKLDALLGLCETISCRRVRLLNYFGE--ASQPCGNCDTCLE-PPD 446
Query: 685 MKNLKEEANILMQVI 699
+ EA + + +
Sbjct: 447 SWDATREAQMALSCV 461
>gi|330808172|ref|YP_004352634.1| ATP-dependent DNA helicase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376280|gb|AEA67630.1| ATP-dependent DNA helicase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 708
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLATRIKRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + +S IALFAIDE HCVS+WGHDFR +Y +L L E F D+P +A
Sbjct: 121 PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I++ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVERLHLQNAERF-LSSFDRPNIFYRI 209
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 110/204 (53%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +LC G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLAERRSDA-GIVYCLSRKKVDEVAAFLCEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP + LR H + F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NDLRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 317 GRAGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED + C CD CVDG
Sbjct: 377 TLLAYFDEDMP-QPCGHCDNCVDG 399
>gi|440741369|ref|ZP_20920801.1| ATP-dependent DNA helicase RecQ [Pseudomonas fluorescens BRIP34879]
gi|440372334|gb|ELQ09140.1| ATP-dependent DNA helicase RecQ [Pseudomonas fluorescens BRIP34879]
Length = 709
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVAKGGDALVLMPTGGGKSLCFQVPALLRNGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIKRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + +S IALFAIDE HCVS+WGHDFR +Y +L L E F D+P +A
Sbjct: 121 PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I++ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVERLHLQNAERF-LSSFDRPNIFYRI 209
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 104/203 (51%), Gaps = 12/203 (5%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +LC G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLSERRSDA-GIVYCLSRKKVDEVAAFLCEQGYPALP 257
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A LP F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE G
Sbjct: 258 YHAGLPNETRSAHQKRFLNEEGLIMVATIAFGMGIDKSNVRFVAHMDLPKSLEAYYQETG 317
Query: 602 RAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 318 RAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQT 377
Query: 659 LVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED E C CD C DG
Sbjct: 378 LLAYFDEDMP-EPCGHCDNCTDG 399
>gi|226315259|ref|YP_002775155.1| ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599]
gi|226098209|dbj|BAH46651.1| probable ATP-dependent DNA helicase [Brevibacillus brevis NBRC
100599]
Length = 591
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 160/295 (54%), Gaps = 30/295 (10%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K +L+K+FG+ S + QK+ +++ LA HD + + TG GKS+C+Q+PA+L V +VI
Sbjct: 4 KAQEILRKYFGYESFREGQKKIITSLLAGHDTVGIMPTGGGKSICYQVPAMLQDGVTIVI 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK---ALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ L G+ A + S ++V + A RG Y ++Y+ PE + +
Sbjct: 64 SPLISLMKDQVDVLVSMGIPATQINSSLDYSEVRDRLRMAARGEYKLLYIAPERLES--E 121
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
Q L + I+ A+DE HCVS+WGHDFRP Y L++ A L+SL + AL
Sbjct: 122 AFQNLIQDVPISFVAVDEAHCVSQWGHDFRPSY--LAI------ARFLQSLPQRPLVAAL 173
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIY 396
TATAT +V EDI + L + F+ T F R NL SV+ + +++F Q +
Sbjct: 174 TATATPEVTEDIKRQLELQDERLFI-TGFGRDNLILSVRKGEN------RREFIQAY-LR 225
Query: 397 TKKKKTG------EKEKSAIPQDLDDQ--SDTSSSSSMSEESRISPNIGDGYYDD 443
K++ G K+ A+ DLD + + T + ++EE R + N YDD
Sbjct: 226 ANKQQAGIIYAATRKDVDALHADLDKRGFAVTKYHAGLTEEER-AANQEAFLYDD 279
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 98/198 (49%), Gaps = 15/198 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY TRK+ ++ L G Y+A L + + F + + ++AT AFGMG
Sbjct: 233 IIYAATRKDVDALHADLDKRGFAVTKYHAGLTEEERAANQEAFLYDDVRTMIATNAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT--------LLPS 627
IDK NVR +IHY P++LEAYYQEAGRAGRDG ++C+L + T L
Sbjct: 293 IDKSNVRYVIHYNMPKNLEAYYQEAGRAGRDGEPSECILLFQPQDIQTQTFFIEQNQLLD 352
Query: 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKN 687
R E + K+ Y M+ C T C + +V+YFGE C C C D E+ +
Sbjct: 353 ERKELEYKKLYAMIDYC-----RTPRCLQQNIVQYFGEA-DAVACGRCANCTD-ETELSD 405
Query: 688 LKEEANILMQVIAAYNEQ 705
+ EA + + E+
Sbjct: 406 ITLEAQKIFSCVKRMRER 423
>gi|91785471|ref|YP_560677.1| ATP-dependent DNA helicase RecQ [Burkholderia xenovorans LB400]
gi|91689425|gb|ABE32625.1| ATP-dependent DNA helicase RecQ [Burkholderia xenovorans LB400]
Length = 615
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 130/219 (59%), Gaps = 21/219 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVVI 219
+L + FG+ + + Q E + DCLVL TG GKSLC+QIP+L+ + +V+
Sbjct: 7 ILNEVFGYPAFRGQQGEIVEHVAGGGDCLVLMPTGGGKSLCYQIPSLVRRERGFGTGIVV 66
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L++ GV A +L S + ++ALR G ++YV PE RL+
Sbjct: 67 SPLIALMQDQVAALTEVGVRAAYLNSTLSSAEAMATERALREGDIDLLYVAPE---RLMT 123
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P Q L E I LFAIDE HCVS+WGHDFRP+Y +LSVL E F ++P +A
Sbjct: 124 PRFQELLERTRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFP---------NVPRIA 174
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA R++I+ L + FV +SF RPN+R+ +
Sbjct: 175 LTATADAITRDEIIHRLALDDARIFV-SSFDRPNIRYRI 212
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 103/195 (52%), Gaps = 11/195 (5%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVV 567
DG T ++Y +R++ A++L G++A Y+A + ++R+ H E F + V+
Sbjct: 234 DGTTDAGVVYCLSRRKVEETAEWLKEKGMRALPYHAGM-DFEIRQKHQEMFQREEGIVMC 292
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 293 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKM 352
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D + CR L+ YFGE S + C CD C++ PP+
Sbjct: 353 IDESDADDAHKRVQTGKLDALLGLCEAATCRRVRLLAYFGE--SSKPCGNCDNCLE-PPD 409
Query: 685 MKNLKEEANILMQVI 699
+ EA + + +
Sbjct: 410 TWDATREAQMALSCV 424
>gi|423695963|ref|ZP_17670453.1| ATP-dependent DNA helicase RecQ [Pseudomonas fluorescens Q8r1-96]
gi|388003876|gb|EIK65203.1| ATP-dependent DNA helicase RecQ [Pseudomonas fluorescens Q8r1-96]
Length = 708
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLATRIKRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + +S IALFAIDE HCVS+WGHDFR +Y +L L E F D+P +A
Sbjct: 121 PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I++ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVERLHLQNAERF-LSSFDRPNIFYRI 209
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 111/204 (54%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L+ L E D I+Y +RK+ +A +LC GV A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLAFLAERRSDA-GIVYCLSRKKVDEVAAFLCEQGVPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP + LR H + F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NDLRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 317 GRAGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED + C CD CVDG
Sbjct: 377 TLLAYFDEDMP-QPCGHCDNCVDG 399
>gi|114778864|ref|ZP_01453663.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Mariprofundus ferrooxydans PV-1]
gi|114550899|gb|EAU53464.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Mariprofundus ferrooxydans PV-1]
Length = 724
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 122/222 (54%), Gaps = 15/222 (6%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ + Q+E + L D VL TG GKS+C+QIPA++ +V+
Sbjct: 11 QARKVLKDIFGYDMFRPMQEEIICNLLDGKDAFVLMPTGGGKSICYQIPAIMREGTGIVV 70
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ L+ GV A + S V ++ G ++YV PE + L K
Sbjct: 71 SPLISLMKDQVDALTACGVKAAYYNSSLKAAEAKDVLERFEAGELDLLYVAPERL--LSK 128
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
E +++FAIDE HCVS+WGHDFRP+Y RL LRE F D+P++AL
Sbjct: 129 SFLTKLEKLKLSMFAIDEAHCVSQWGHDFRPEYVRLGELREIFP---------DVPMLAL 179
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
TATA REDI L + K +FV SF RPN+R+ V +
Sbjct: 180 TATADEHTREDISDRLQLGKAKRFV-ASFDRPNIRYLVAEKR 220
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 126/220 (57%), Gaps = 12/220 (5%)
Query: 489 SFERTDLLNKPAERLSMLQEPLE--DGLT----IIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ AE+ L + L+ DG +IY +RK +A L G++AAAY
Sbjct: 206 SFDRPNIRYLVAEKRQPLTQILQFLDGWPNASGVIYCLSRKRVEDLAVNLQRHGIRAAAY 265
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A +P RV +F ++++V+VATIAFGMG+DK NVR +IH+ P+S+E+YYQE GR
Sbjct: 266 HAGIPGRSRERVQDDFLRDRVKVIVATIAFGMGVDKPNVRFVIHHDLPKSIESYYQETGR 325
Query: 603 AGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG ++ ++ +++ + L+ + + DQ + L+ + CR ++L
Sbjct: 326 AGRDGLESEALMLYGSGDVNLVRRLIENVDNIDQRRVEVHKLNSMVAFS-EALTCRRRVL 384
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVI 699
+ YFGE E C CD+C+D PP + E A + +Q +
Sbjct: 385 LGYFGESLD-EPCGNCDICLD-PPATYDATEYAEVALQCV 422
>gi|452976451|gb|EME76266.1| ATP-dependent DNA helicase YocI [Bacillus sonorensis L12]
Length = 592
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 140/260 (53%), Gaps = 19/260 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
K SLL+++FG+ SL+ Q+EA+ + L D + TG GKS+C+QIPAL+ +VI
Sbjct: 4 KAESLLQRYFGYPSLRPGQREAIQSVLEGRDTACIMPTGGGKSICYQIPALMFEGTTLVI 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKA---LRGMYSIIYVCPETVIRLIK 276
SPLISLM DQ L++ G+ A ++ S +E++ G Y + YV PE RL
Sbjct: 64 SPLISLMKDQVDALNQLGIEASYVNSSLDSRMIEERMSILSEGGYKLFYVTPE---RLAS 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P R+ I L AIDE HC+S+WGHDFRP YR + FGA + + ++A
Sbjct: 121 PDFIRVISHLHIPLAAIDEAHCISQWGHDFRPSYRHIESF---FGALGSRPV-----VLA 172
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR---ASYKKDFCQL 392
LTATAT +V EDI L + K + T F R NL F + + R A +K+ +
Sbjct: 173 LTATATPEVHEDICAQLGIQKENT-IFTGFSRDNLTFKIVKGENRDRFIEAYIEKNRSEA 231
Query: 393 IDIYTKKKKTGEKEKSAIPQ 412
IYT ++ E+ + Q
Sbjct: 232 GIIYTATRREAERISEKLSQ 251
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 95/173 (54%), Gaps = 14/173 (8%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY TR+E I++ L G+ A Y+ + + R F + + V+VAT AFGMG
Sbjct: 233 IIYTATRREAERISEKLSQKGISAGCYHGGMNDDERDRQQDLFLNDSISVMVATSAFGMG 292
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS--MPTLLPSRRSEDQ 633
I+K N+R +IHY P+++E+YYQEAGRAGRDG ++C+L + + L + +ED+
Sbjct: 293 INKTNIRYVIHYQIPKNMESYYQEAGRAGRDGLDSECILLFSPQDIRLQRFLIEQSTEDE 352
Query: 634 TKQAY------RMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVD 680
QA +M+ C +T C + ++ YFGE E C C C+D
Sbjct: 353 AIQAQDMKKLRQMVDFC-----HTEGCLERFILGYFGEQ-QTEDCGRCGSCLD 399
>gi|447917646|ref|YP_007398214.1| ATP-dependent DNA helicase RecQ [Pseudomonas poae RE*1-1-14]
gi|445201509|gb|AGE26718.1| ATP-dependent DNA helicase RecQ [Pseudomonas poae RE*1-1-14]
Length = 709
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 17/219 (7%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ S + Q + D LVL TG GKSLCFQ+PALL + VV+
Sbjct: 4 QAQRVLKDIFGYDSFRGRQGAIIERVAKGGDALVLMPTGGGKSLCFQVPALLRNGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVIRLIK 276
SPLI+LM DQ + L + GV A L S + + + RG ++Y+ PE RL++
Sbjct: 64 SPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIKRGEVKMLYLAPE---RLVQ 120
Query: 277 P-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
P + +S IALFAIDE HCVS+WGHDFR +Y +L L E F D+P +A
Sbjct: 121 PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFP---------DVPRIA 171
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA + RE+I++ LH+ +F L+SF RPN+ + +
Sbjct: 172 LTATADKRTREEIVERLHLQNAERF-LSSFDRPNIFYRI 209
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 110/204 (53%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L++L E D I+Y +RK+ +A +LC G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLALLSERRSDA-GIVYCLSRKKVDEVAAFLCEQGYPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP ++ R H + F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NETRSAHQKRFLNEEGLIMVATIAFGMGIDKSNVRFVAHMDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD + L + L L + +++ K+ + D + CR +
Sbjct: 317 GRAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF ED E C CD C DG
Sbjct: 377 TLLAYFDEDMP-EPCGHCDNCTDG 399
>gi|226227108|ref|YP_002761214.1| ATP-dependent DNA helicase RecQ [Gemmatimonas aurantiaca T-27]
gi|226090299|dbj|BAH38744.1| ATP-dependent DNA helicase RecQ [Gemmatimonas aurantiaca T-27]
Length = 598
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 156/294 (53%), Gaps = 35/294 (11%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ + L ++FG+ + Q A+ A L+ D L++ TG GKSLCFQ+PAL+ + +VI
Sbjct: 16 QARATLLRYFGYPDFRPPQIRAVEAVLSGRDALIVLPTGGGKSLCFQVPALVRDGLTIVI 75
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR---GMYSIIYVCPETVI--RL 274
SPLISLM DQ L++ G+ A ++ S ++V + R G ++Y+ PE + R+
Sbjct: 76 SPLISLMKDQVETLARRGIEAAYINSTLSVSEVADRMARARDGSLRLLYLAPERMEAGRM 135
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
++ L+ + G+ L +DE HC+S+WGHDFRP YRR+ +RE G+ +
Sbjct: 136 LQQLRTI----GVVLLTVDEAHCISEWGHDFRPSYRRIGYIREQLGSPQ---------TV 182
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS-----SRASYKKDF 389
ALTATAT +VR DI + L + + + V+ F R NL + V ++T + + +D
Sbjct: 183 ALTATATPEVRRDIARQLLLRQ-PEVVVGGFDRTNLTYHVVPTRTQRDKDLTAIEWLRDA 241
Query: 390 CQLIDIYTKKKKTGEK----------EKSAIPQDLDD-QSDTSSSSSMSEESRI 432
+YT +K E+ + +A LDD Q + + M E SR+
Sbjct: 242 PGAAVVYTPTRKAVERVTAVLLRGRIKATAYHGGLDDRQRQRAQDAFMEERSRV 295
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 64/102 (62%)
Query: 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572
G ++Y PTRK + L +KA AY+ L Q +R F E + V+VAT AF
Sbjct: 243 GAAVVYTPTRKAVERVTAVLLRGRIKATAYHGGLDDRQRQRAQDAFMEERSRVIVATSAF 302
Query: 573 GMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL 614
GMGIDK +VR ++H+ P +LE+YYQEAGRAGRDG + CVL
Sbjct: 303 GMGIDKPDVRLVVHHSMPGTLESYYQEAGRAGRDGQASTCVL 344
>gi|444428652|ref|ZP_21223965.1| ATP-dependent DNA helicase RecQ [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444238126|gb|ELU49752.1| ATP-dependent DNA helicase RecQ [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 611
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 142/261 (54%), Gaps = 20/261 (7%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
SD + +L+ FG+ ++ Q+ + A + D LV+ TG GKSLC+QIPAL+
Sbjct: 10 SDSPLTPQRVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSG 69
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETV 271
+ +VISPLISLM DQ +L +GV A + S P + V + G ++YV PE V
Sbjct: 70 ITLVISPLISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMYTGHIKLVYVSPERV 129
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
L++ E+ +++ A+DE HC+S+WGHDFRP+Y L L++ F +
Sbjct: 130 --LMRDFIERLENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQQFS---------HV 178
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---K 386
P MALTATA R DIL+ L ++ + L SF RPN+R+++ KH S Y +
Sbjct: 179 PFMALTATADDATRRDILERLQLNNPEVY-LGSFDRPNIRYNLVEKHKPVSQIVRYLETQ 237
Query: 387 KDFCQLIDIYTKKKKTGEKEK 407
K C +I ++KK EK
Sbjct: 238 KGNCGIIYCGSRKKVEMVTEK 258
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 157/314 (50%), Gaps = 28/314 (8%)
Query: 458 EFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLL--NKPAERLSMLQEPLEDGLT 515
+ LE +++ +V G F DR R +L+ +KP ++ E +
Sbjct: 194 DILERLQLNNPEVYLGSF-----------DRPNIRYNLVEKHKPVSQIVRYLETQKGNCG 242
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ + + LC ++AA Y+A + + V F + +++VVAT+AFGMG
Sbjct: 243 IIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQESFQRDDIQIVVATVAFGMG 302
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ ++ A++S + +L +
Sbjct: 303 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGP 362
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
Q + L+ + CR ++L+ YFGE + + C CD+C+D PP+ + EEA
Sbjct: 363 QKQVETHKLNAMSAFA-EAQTCRRQVLLNYFGE-YREKPCGNCDICLD-PPKHFDATEEA 419
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLW 751
+ + N QS M + G++ + + + K+ I R+ S Y
Sbjct: 420 RKALSCVYRVN-QSFGMGYVVEVLRGMQNIRVRENGHDKISTYAIGRDHSHDY------- 471
Query: 752 WRGLARIMENKGYI 765
W + R + +KG +
Sbjct: 472 WVSIFRQLIHKGLL 485
>gi|238750693|ref|ZP_04612192.1| ATP-dependent DNA helicase recQ [Yersinia rohdei ATCC 43380]
gi|238711083|gb|EEQ03302.1| ATP-dependent DNA helicase recQ [Yersinia rohdei ATCC 43380]
Length = 610
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 137/222 (61%), Gaps = 19/222 (8%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
E+ +L+ FG+ + Q+E ++A L+ DCLV+ TG GKSLC+QIPAL+T + +
Sbjct: 10 ELLAEQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTEGLTL 69
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL-----RGMYSIIYVCPETVI 272
V+SPLISLM DQ +L +GV A L S Q + +Q A+ G ++Y+ PE ++
Sbjct: 70 VVSPLISLMKDQVDQLLAYGVGAGCLNSSQ--TREQQLAVMDGCRSGQIKLLYIAPERLV 127
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
+ L +L + R AL A+DE HC+S+WGHDFRP+YR L L++ F D+P
Sbjct: 128 -MESFLDQLHQWRP-ALLAVDEAHCISQWGHDFRPEYRALGQLKQRFP---------DLP 176
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
++ALTATA R DI++ L++ + ++SF RPN+R+++
Sbjct: 177 VIALTATADEATRGDIVRLLNL-ENPLIQVSSFDRPNIRYTL 217
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 98/187 (52%), Gaps = 13/187 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +R + L G+ AAY+A L + V F + L+VVVAT+AFGMG
Sbjct: 240 IIYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAHVQEAFQRDDLQVVVATVAFGMG 299
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ +L + + M L RR ++
Sbjct: 300 INKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWL---RRCLEEKP 356
Query: 636 QAYRMLSDCFRYGMN-------TSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNL 688
+ D R+ +N CR +L+ YFGE + C CD+C+D P L
Sbjct: 357 AGAQ--QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEG-KQQSCGNCDICLDPPKRYDGL 413
Query: 689 KEEANIL 695
+ L
Sbjct: 414 ADAQKAL 420
>gi|388598278|ref|ZP_10156674.1| ATP-dependent DNA helicase RecQ [Vibrio campbellii DS40M4]
Length = 611
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 142/261 (54%), Gaps = 20/261 (7%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
SD + +L+ FG+ ++ Q+ + A + D LV+ TG GKSLC+QIPAL+
Sbjct: 10 SDSPLTPQRVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSG 69
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETV 271
+ +VISPLISLM DQ +L +GV A + S P + V + G ++YV PE V
Sbjct: 70 ITLVISPLISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMYTGHIKLVYVSPERV 129
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
L++ E+ +++ A+DE HC+S+WGHDFRP+Y L L++ F +
Sbjct: 130 --LMRDFIERLENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQQFS---------HV 178
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---K 386
P MALTATA R DIL+ L ++ + L SF RPN+R+++ KH S Y +
Sbjct: 179 PFMALTATADDATRRDILERLQLNNPEVY-LGSFDRPNIRYNLVEKHKPVSQIVRYLETQ 237
Query: 387 KDFCQLIDIYTKKKKTGEKEK 407
K C +I ++KK EK
Sbjct: 238 KGNCGIIYCGSRKKVEMVTEK 258
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 157/314 (50%), Gaps = 28/314 (8%)
Query: 458 EFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLL--NKPAERLSMLQEPLEDGLT 515
+ LE +++ +V G F DR R +L+ +KP ++ E +
Sbjct: 194 DILERLQLNNPEVYLGSF-----------DRPNIRYNLVEKHKPVSQIVRYLETQKGNCG 242
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ + + LC ++AA Y+A + + V F + +++VVAT+AFGMG
Sbjct: 243 IIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMG 302
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY---ANLSSMPTLLPSRRSED 632
I+K NVR ++H+ P+++E+YYQE GRAGRDG A+ ++ A++S + +L +
Sbjct: 303 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGP 362
Query: 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEA 692
Q + L+ + CR ++L+ YFGE + + C CD+C+D PP+ + EEA
Sbjct: 363 QKQVETHKLNAMSAFA-EAQTCRRQVLLNYFGE-YREKPCGNCDICLD-PPKHFDATEEA 419
Query: 693 NILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKI-REQSQKYLATDLLW 751
+ + N QS M + G++ + + + K+ I R+ S Y
Sbjct: 420 RKALSCVYRVN-QSFGMGYVVEVLRGMQNIRVRENGHDKISTYAIGRDHSHDY------- 471
Query: 752 WRGLARIMENKGYI 765
W + R + +KG +
Sbjct: 472 WVSIFRQLIHKGLL 485
>gi|134294437|ref|YP_001118172.1| ATP-dependent DNA helicase RecQ [Burkholderia vietnamiensis G4]
gi|134137594|gb|ABO53337.1| ATP-dependent DNA helicase RecQ [Burkholderia vietnamiensis G4]
Length = 616
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/229 (42%), Positives = 137/229 (59%), Gaps = 24/229 (10%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV----VVI 219
+L + FG+S+ + Q E + DCLVL TG GKSLC+QIPALL +V +V+
Sbjct: 7 ILDEVFGYSAFRGQQGEIVEHVAGGGDCLVLMPTGGGKSLCYQIPALLRREVGQGAGIVV 66
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVI--RL 274
SPLI+LM DQ + L + GV A +L S + ++ALR G ++YV PE ++ R
Sbjct: 67 SPLIALMQDQVAALREVGVRAAYLNSTLSGAEAAATERALREGEIDLLYVAPERLMTGRF 126
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
++ L+R I LFAIDE HCVS+WGHDFRP+Y +LSVL E F + +P +
Sbjct: 127 LELLERAR----IGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPS---------VPRI 173
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
ALTATA R++I+ L + FV +SF RPN+R+ + K ++RA
Sbjct: 174 ALTATADAITRDEIIHRLALDDARVFV-SSFDRPNIRYRIVE-KDNARA 220
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 132/267 (49%), Gaps = 26/267 (9%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVV- 567
DG T ++Y +R++ A++L GV+A Y+A + + ++R+ H E + + VV+
Sbjct: 234 DGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGM-EFEVRQKHQEMFQREEGVVMC 292
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 293 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPANAWMAYGLGDVVQQRKM 352
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D T CR L+ YFGE + E C CD C++ PP+
Sbjct: 353 IDESDADDAHKRVQTSKLDALLGLCETISCRRVRLLNYFGE--ASEPCGNCDTCLE-PPD 409
Query: 685 MKNLKEEANILM------QVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIR 738
+ EA + + Q + +N ++ + + I G + +K + R + ++ I
Sbjct: 410 SWDATREAQMALSCVFRAQRASGFNFGASHLIE---ILRGARTEKVLQRGHDQLSTFGIG 466
Query: 739 EQSQKYLATDLLWWRGLARIMENKGYI 765
A WR + R + GY+
Sbjct: 467 A------ALSEPEWRAIFRQLVAYGYL 487
>gi|408491728|ref|YP_006868097.1| ATP-dependent DNA helicase RecQ [Psychroflexus torquis ATCC 700755]
gi|408469003|gb|AFU69347.1| ATP-dependent DNA helicase RecQ [Psychroflexus torquis ATCC 700755]
Length = 728
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 131/226 (57%), Gaps = 21/226 (9%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
++ ++ LKK+FG + K Q++ + + +++ D V+ TG GKSLC+Q+PAL+ +
Sbjct: 3 QINLHQELKKYFGFNEFKGLQEQVIKSIISNKDTFVIMPTGGGKSLCYQLPALIKEGTAI 62
Query: 218 VISPLISLMHDQCS---KLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPE 269
V+SPLI+LM +Q +S+H A L S NK + K ++ G+ ++YV PE
Sbjct: 63 VVSPLIALMKNQVDAIRNISEHHGVAHVLNSSL--NKTQVKQVKEDISSGITKLVYVAPE 120
Query: 270 TVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKF 329
++ + + I+ AIDE HC+S+WGHDFRP+YR L + E G N
Sbjct: 121 SLTK--TEYIEFLKGENISFLAIDEAHCISEWGHDFRPEYRNLKNIIERIGEN------- 171
Query: 330 DIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
IP++ LTATAT +V+EDILK+L + F SF RPNL + ++
Sbjct: 172 -IPIIGLTATATPKVQEDILKNLRIPNSKTFK-DSFNRPNLYYEIR 215
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 103/188 (54%), Gaps = 5/188 (2%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK +++ L GVKA Y+A L R F ++VVVATIAFGMG
Sbjct: 238 IIYCLSRKRVEQLSQALQVNGVKAVPYHAGLDAKSRSRHQDMFLMEDIDVVVATIAFGMG 297
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--LPSRRSEDQ 633
IDK +VR ++H P+S+E+YYQE GRAGRDG CV Y N + L S + +
Sbjct: 298 IDKPDVRFVVHNDIPKSIESYYQETGRAGRDGGEGHCVAYYNHKDIEKLEKFMSGKPIAE 357
Query: 634 TKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDV--CVDGPPEMKNLKEE 691
+ + +L D + +S R K ++ YFGE+F +E D+ + P + K K++
Sbjct: 358 QEIGHALLQDVVAFA-ESSISRRKYILHYFGEEFDNETGDGGDMDDNIRYPKKKKEAKDD 416
Query: 692 ANILMQVI 699
+++++ +
Sbjct: 417 VDLILKTV 424
>gi|407790669|ref|ZP_11137761.1| ATP-dependent DNA helicase RecQ [Gallaecimonas xiamenensis 3-C-1]
gi|407203006|gb|EKE72994.1| ATP-dependent DNA helicase RecQ [Gallaecimonas xiamenensis 3-C-1]
Length = 607
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 126/218 (57%), Gaps = 19/218 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221
S+L FG+ + Q+ + A +A D LV+ TG GKSLC+Q+PAL+ +VISP
Sbjct: 16 QSVLASVFGYDQFRPGQQAVVDAVVAGRDALVIMPTGGGKSLCYQVPALVLPGTAIVISP 75
Query: 222 LISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIRLIKP- 277
LISLM DQ +L GV A +L S P + +V + G ++YV PE RL +P
Sbjct: 76 LISLMKDQVDQLLAMGVRAAYLNSALPRDQQWQVLNQLHHGELDLLYVSPE---RLSQPD 132
Query: 278 -LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
QRL E I+LFA+DE HC+S WGHDFRP+Y L L+ +F +PLMAL
Sbjct: 133 FQQRLLEIP-ISLFAVDEAHCISSWGHDFRPEYMALGQLKRHFP---------QVPLMAL 182
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
TATA R+DI + L + F L+SF RPN+R+ V
Sbjct: 183 TATADKATRQDIQQRLGLDD-PYFNLSSFDRPNIRYLV 219
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 116/205 (56%), Gaps = 6/205 (2%)
Query: 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE 557
KP +L E IIY +RK IA+ L G G AA Y+A L + + V
Sbjct: 224 KPINQLLQYLEGQRGQSGIIYAGSRKRVDDIAQKLRGQGFNAAGYHAGLSNDERQFVQDA 283
Query: 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY-- 615
F ++++++VVAT+AFGMGI+K +VR + H+ P+++E+YYQE GRAGRDG ++ +
Sbjct: 284 FQKDEVDIVVATVAFGMGINKPDVRFVAHFDLPKNIESYYQETGRAGRDGLPSEAWMLFE 343
Query: 616 -ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL 674
+++ + +L+ +E Q K L+ + + CR ++L+ YFG+ +S E+C
Sbjct: 344 PGDVARVRSLIELSENEAQQKVELMKLNAMAGFAEGLT-CRRQVLLNYFGQ-YSGERCGN 401
Query: 675 CDVCVDGPPEMKNLKEEANILMQVI 699
CD+C+D PP+ + E A M I
Sbjct: 402 CDICLD-PPQTLDGTELAQKAMSCI 425
>gi|351732072|ref|ZP_08949763.1| ATP-dependent DNA helicase RecQ [Acidovorax radicis N35]
Length = 631
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 131/226 (57%), Gaps = 19/226 (8%)
Query: 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVV 217
+++L FG+ + Q++ + + D LVL TG GKSLC+Q+PA++ + V +
Sbjct: 17 HTVLHDVFGYEQFRGPQQDIVEHVIGGSDALVLMPTGGGKSLCYQVPAIVRQQQGRGVTI 76
Query: 218 VISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR---GMYSIIYVCPETV--I 272
VISPLI+LMHDQ L + GV A FL S ++ + LR G +++Y PE +
Sbjct: 77 VISPLIALMHDQVGALHEAGVDAAFLNSTLSFDEAQDVELRLQTGDITLLYAAPERLNTP 136
Query: 273 RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332
R + L L + ++LFAIDE HCVS+WGHDFRP+YR L+VL E + +P
Sbjct: 137 RFLGLLDSLYQGGHLSLFAIDEAHCVSQWGHDFRPEYRALTVLHERYSG---------VP 187
Query: 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378
+ALTATA R DI++ L + F+ +SF RPN+R+ ++ K
Sbjct: 188 RIALTATADDLTRADIIERLQLEDARLFI-SSFDRPNIRYRIEEKK 232
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 100/198 (50%), Gaps = 12/198 (6%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
++Y +RK +A LC G+ A Y+A L ++ F + V+VATIAFGMG
Sbjct: 252 VVYCQSRKRVEELAATLCDAGLTALPYHAGLDTKVRQKNQDRFLREEGIVMVATIAFGMG 311
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQT- 634
IDK +VR + H P+++E YYQE GRAGRDG AD + L+ + + RR D++
Sbjct: 312 IDKPDVRFVAHVDMPKNIEGYYQETGRAGRDGLNADAWMAYGLNDV---VNQRRMIDESP 368
Query: 635 -----KQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLK 689
KQA R D + CR L+ YFGE + C CD C+ PP + +
Sbjct: 369 AGEEFKQALRGKLDALLALAEATDCRRVRLLAYFGEQST--PCGNCDNCLT-PPAIWDAT 425
Query: 690 EEANILMQVIAAYNEQSN 707
+ A L+ I N+ S
Sbjct: 426 DAARKLLSTIYRVNQASG 443
>gi|343501055|ref|ZP_08738938.1| ATP-dependent DNA helicase RecQ [Vibrio tubiashii ATCC 19109]
gi|418477793|ref|ZP_13046915.1| ATP-dependent DNA helicase RecQ [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342819043|gb|EGU53890.1| ATP-dependent DNA helicase RecQ [Vibrio tubiashii ATCC 19109]
gi|384574570|gb|EIF05035.1| ATP-dependent DNA helicase RecQ [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 612
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 144/252 (57%), Gaps = 20/252 (7%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L+ FG+ S ++ Q+E + + +A D LV+ TG GKSLC+QIPAL + +V+SPLI
Sbjct: 20 ILEDVFGYQSFRDGQQEVIESAVAGQDSLVIMPTGGGKSLCYQIPALAREGLTLVVSPLI 79
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQR 280
SLM DQ +L +GV A + S P + V + G ++YV PE V L++
Sbjct: 80 SLMKDQVDQLKANGVAAECVNSTMPREELISVYNRMHSGALKLVYVSPERV--LMRDFIE 137
Query: 281 LAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340
E+ +++ A+DE HC+S+WGHDFRP+Y L L+++F IP+MALTATA
Sbjct: 138 RLENISLSMIAVDEAHCISQWGHDFRPEYASLGQLKQHFP---------HIPVMALTATA 188
Query: 341 TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---KKDFCQLIDI 395
R+DI++ L + + + L SF RPN+R+++ KH S + ++ C +I
Sbjct: 189 DDATRKDIMQRLQLDEPHTY-LGSFDRPNIRYTLVEKHKPVSQVVRFLEGQRGSCGIIYC 247
Query: 396 YTKKKKTGEKEK 407
++KK EK
Sbjct: 248 GSRKKVEMVTEK 259
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 148/287 (51%), Gaps = 21/287 (7%)
Query: 489 SFERTDLL------NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ +KP ++ E IIY +RK+ + + LC G++AA+Y
Sbjct: 211 SFDRPNIRYTLVEKHKPVSQVVRFLEGQRGSCGIIYCGSRKKVEMVTEKLCNNGLRAASY 270
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L + V F + +++VVAT+AFGMGI+K NVR ++H+ P+++E+YYQE GR
Sbjct: 271 HAGLEADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGR 330
Query: 603 AGRDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A+ ++ A++S + +L + Q + L+ + CR ++L
Sbjct: 331 AGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVEAHKLNAMSAFA-EAQTCRRQVL 389
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGI 719
+ YFGE + + C CD+C+D PP+ + E+A + + N QS M + G+
Sbjct: 390 LNYFGE-YREKPCGNCDICLD-PPKHFDATEQAQKALSCVYRVN-QSFGMGYVVEVLRGM 446
Query: 720 KKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYI 765
+ + + + K+ + RE S Y W + R + +KG +
Sbjct: 447 QNIRVRENGHDKLSTYGLGRENSHDY-------WVSVFRQLIHKGLL 486
>gi|304311509|ref|YP_003811107.1| ATP-dependent DNA helicase [gamma proteobacterium HdN1]
gi|301797242|emb|CBL45462.1| ATP-dependent DNA helicase [gamma proteobacterium HdN1]
Length = 632
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 131/224 (58%), Gaps = 20/224 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+LK FG+ + Q+ + + D LVL TG GKSLC+QIPALL +VISPLI
Sbjct: 7 ILKHTFGYDHFRGQQETIIQTLINGQDALVLMPTGGGKSLCYQIPALLRAGTGIVISPLI 66
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ L++ G+ A FL S +V E+ G ++Y+ PE + R ++ L
Sbjct: 67 ALMQDQVDALTQLGIRASFLNSSLSREQVYATERALFSGGIDLLYIAPERLTQERTLQLL 126
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+++ I+LFAIDE HCVS+WGHDFR DY +LS+L E+F IP +ALTA
Sbjct: 127 KQIP----ISLFAIDEAHCVSQWGHDFRADYLQLSLLHEHFP---------QIPRVALTA 173
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382
TA + R +I++ L + +F +SF RPN+++ + KTS R
Sbjct: 174 TADSRTRNEIIQRLQLQSAQQFT-SSFDRPNIQYRIT-PKTSPR 215
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 80/154 (51%), Gaps = 5/154 (3%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTE-FHENKLEVVVATIAFGM 574
I+Y +R + A +L G A Y+A ++R +H + F + ++VATIAFGM
Sbjct: 232 IVYCLSRSKVDDTAAWLSSEGFTALPYHAG-QTQEMRALHQKRFLVEENIIIVATIAFGM 290
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS---SMPTLLPSRRSE 631
GI+K +VR + H P+SLEAYYQE GRAGRDG A L L + +L +
Sbjct: 291 GINKPDVRFVAHLDLPKSLEAYYQETGRAGRDGKPATAWLAYGLQDVIKLRQMLEGSQGS 350
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGE 665
+Q K+ R D + CR L+ YFGE
Sbjct: 351 EQHKRVERHKLDAMLGLCEITSCRRHALLHYFGE 384
>gi|381158522|ref|ZP_09867755.1| ATP-dependent DNA helicase RecQ [Thiorhodovibrio sp. 970]
gi|380879880|gb|EIC21971.1| ATP-dependent DNA helicase RecQ [Thiorhodovibrio sp. 970]
Length = 622
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 126/221 (57%), Gaps = 19/221 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L + FG + + Q+ + + D LVL TG GKSLC+QIPALL +V+SPLI
Sbjct: 16 ILNRVFGFPAFRGRQQAVIERLMVGGDALVLMPTGGGKSLCYQIPALLRPGTGIVVSPLI 75
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKA---LRGMYSIIYVCPETVI--RLIKPL 278
+LM DQ L + GV A FL S ++VE+ L G ++YV PE ++ R + L
Sbjct: 76 ALMQDQVDALRQLGVRAAFLNSSLARDQVERTEHALLAGQLDLLYVAPERLLSGRFLALL 135
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+R IALFAIDE HCVS+WGHDFRP+Y +L +L + +P +ALTA
Sbjct: 136 ERTP----IALFAIDEAHCVSQWGHDFRPEYVQLDLLHRRWP---------QVPRVALTA 182
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT 379
TA R +IL L + +FV +SF RPN+R+ + ++
Sbjct: 183 TADAPTRSEILTRLQLPLDAQFV-SSFDRPNIRYRIVEKRS 222
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 103/205 (50%), Gaps = 11/205 (5%)
Query: 487 DRSFERTDLLNKPAERLSMLQ-----EPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
DR R ++ K + R +LQ P + G I+Y +R+ A++L G ++
Sbjct: 209 DRPNIRYRIVEKRSPRQQLLQFLKREHPGDAG--IVYCRSRRSVDETAEFLREQGFQSVP 266
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A + Q R F + VATIAFGMGIDK +VR + H P+SLEAYYQE G
Sbjct: 267 YHAGMTAEQRRANQARFLREDGLITVATIAFGMGIDKPDVRFVAHLDLPKSLEAYYQETG 326
Query: 602 RAGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKI 658
RAGRDG AD + L + L + +E+Q K+ D T+ CR ++
Sbjct: 327 RAGRDGLPADAWMTYGLGDLVMLRRFIDESGAEEQFKRLEHQKLDNMLGLCETTECRRQV 386
Query: 659 LVEYFGEDFSHEKCQLCDVCVDGPP 683
L+ YFGE E C CD C++ P
Sbjct: 387 LLNYFGEPLP-EPCGNCDTCLEPVP 410
>gi|124004539|ref|ZP_01689384.1| ATP-dependent DNA helicase RecQ [Microscilla marina ATCC 23134]
gi|123990111|gb|EAY29625.1| ATP-dependent DNA helicase RecQ [Microscilla marina ATCC 23134]
Length = 728
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 132/219 (60%), Gaps = 25/219 (11%)
Query: 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224
LK+ FG+ + Q+E + + L + V+ TG+GKSLC+Q+PA+++ +VISPLI+
Sbjct: 13 LKEVFGYGQFRGAQQEIIKSILGEKNTFVIMPTGAGKSLCYQLPAIVSPGSAIVISPLIA 72
Query: 225 LMHDQCSKLSKHGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIR-----LIK 276
LM +Q +L+ G+ A FL S +V++ L G ++YV PE++ + +K
Sbjct: 73 LMKNQVDQLNALGINAQFLNSTLTKGEITRVKKDVLNGEVKLLYVAPESLTKESNVDFLK 132
Query: 277 PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336
Q I+ AIDE HC+S+WGHDFRP+YR++ + +N G ++P++AL
Sbjct: 133 KAQ-------ISFVAIDEAHCISEWGHDFRPEYRKIRQIIDNLG---------NLPIIAL 176
Query: 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375
TATAT +V++DI ++L M + F +SF RPNL + V+
Sbjct: 177 TATATPKVQQDIQRNLQMEDASVFK-SSFNRPNLYYEVR 214
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 89/152 (58%), Gaps = 3/152 (1%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ I ++L +KA Y+A L S R F +++VATIAFGMG
Sbjct: 236 IIYCLSRKKVEEIYEFLKVNDIKALPYHAGLDSSVRMRNQDAFLNEDADIIVATIAFGMG 295
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTK 635
IDK +VR +IHY P+SLE YYQE GRAGRDG ADC+++ + + + L + + T+
Sbjct: 296 IDKPDVRCVIHYDAPKSLEGYYQETGRAGRDGLNADCIMFYSPNDIQKLEKFNKDKPVTE 355
Query: 636 Q--AYRMLSDCFRYGMNTSCCRAKILVEYFGE 665
+ A +L + Y + CR + L+ YFGE
Sbjct: 356 RDNARHLLQEMMDYA-TSGVCRRRQLLHYFGE 386
>gi|146298045|ref|YP_001192636.1| ATP-dependent DNA helicase RecQ [Flavobacterium johnsoniae UW101]
gi|146152463|gb|ABQ03317.1| ATP-dependent DNA helicase, RecQ family [Flavobacterium johnsoniae
UW101]
Length = 731
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 137/234 (58%), Gaps = 21/234 (8%)
Query: 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVV 217
E++++ LKK+FG S K Q++ +++ L + V+ TG GKSLC+Q+PAL+ +
Sbjct: 5 EIEIHKELKKYFGFSQFKGLQEQVITSILGKTNTFVIMPTGGGKSLCYQLPALIQDGTAI 64
Query: 218 VISPLISLMHDQCSKL----SKHGVTACFLGSGQPDNKVEQ---KALRGMYSIIYVCPET 270
V+SPLI+LM +Q + S++G+ A L S ++ Q G+ ++YV PE+
Sbjct: 65 VVSPLIALMKNQVDAIRSLSSENGI-AHVLNSSLTKTEIAQVKKDISSGLTKLLYVAPES 123
Query: 271 VIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
+ + + +S I+ AIDE HC+S+WGHDFRP+YR L + + G
Sbjct: 124 LTK--EEYVAFLQSVPISFVAIDEAHCISEWGHDFRPEYRNLRTIIKQLGK--------- 172
Query: 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRAS 384
+P++ LTATAT +V+EDILK+L MS F SF RPNL + V+ +KT S S
Sbjct: 173 VPIIGLTATATPKVQEDILKNLDMSDANTFK-ASFNRPNLYYEVR-TKTKSIES 224
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 124/258 (48%), Gaps = 20/258 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
IIY +RK+ SIA+ L G+ A Y+A L + F ++VVVATIAFGMG
Sbjct: 239 IIYCLSRKKVESIAEVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMG 298
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--LPSRRSEDQ 633
IDK +VR +IH+ P+SLE+YYQE GRAGRDG C+ Y + + L S + +
Sbjct: 299 IDKPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMSGKPVAE 358
Query: 634 TKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDV--CVDGPPEMKNLKEE 691
+ + +L + Y TS R K L+ YFGE+F E + D+ V P KE+
Sbjct: 359 QEIGFALLQEVVAYA-ETSMSRRKFLLHYFGEEFDSETGEGADMDDNVRNPKNKIEAKEQ 417
Query: 692 ANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLAT---- 747
L++++ D IY K+ F + + + +Q Y +
Sbjct: 418 VVKLLEIVR----------DTKHIYKS-KEIVFTLIGRINAVIKAHKTDTQSYFGSGSDH 466
Query: 748 DLLWWRGLARIMENKGYI 765
D +W L R + GY+
Sbjct: 467 DEKYWMALLRQVLVTGYL 484
>gi|387901024|ref|YP_006331363.1| ATP-dependent DNA helicase RecQ [Burkholderia sp. KJ006]
gi|387575916|gb|AFJ84632.1| ATP-dependent DNA helicase RecQ [Burkholderia sp. KJ006]
Length = 635
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/229 (42%), Positives = 137/229 (59%), Gaps = 24/229 (10%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV----VVI 219
+L + FG+S+ + Q E + DCLVL TG GKSLC+QIPALL +V +V+
Sbjct: 26 ILDEVFGYSAFRGQQGEIVEHVAGGGDCLVLMPTGGGKSLCYQIPALLRREVGQGAGIVV 85
Query: 220 SPLISLMHDQCSKLSKHGVTACFLGS--GQPDNKVEQKALR-GMYSIIYVCPETVI--RL 274
SPLI+LM DQ + L + GV A +L S + ++ALR G ++YV PE ++ R
Sbjct: 86 SPLIALMQDQVAALREVGVRAAYLNSTLSGAEAAATERALREGEIDLLYVAPERLMTGRF 145
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
++ L+R I LFAIDE HCVS+WGHDFRP+Y +LSVL E F + +P +
Sbjct: 146 LELLERAR----IGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPS---------VPRI 192
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383
ALTATA R++I+ L + FV +SF RPN+R+ + K ++RA
Sbjct: 193 ALTATADAITRDEIIHRLALDDARVFV-SSFDRPNIRYRIVE-KDNARA 239
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 132/267 (49%), Gaps = 26/267 (9%)
Query: 512 DGLT---IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVV- 567
DG T ++Y +R++ A++L GV+A Y+A + + ++R+ H E + + VV+
Sbjct: 253 DGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGM-EFEVRQKHQEMFQREEGVVMC 311
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---L 624
ATIAFGMGIDK +VR + H P+S+E YYQE GRAGRDG A+ + L + +
Sbjct: 312 ATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPANAWMAYGLGDVVQQRKM 371
Query: 625 LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPE 684
+ ++D K+ D T CR L+ YFGE + E C CD C++ PP+
Sbjct: 372 IDESDADDAHKRVQTSKLDALLGLCETISCRRVRLLNYFGE--ASEPCGNCDTCLE-PPD 428
Query: 685 MKNLKEEANILM------QVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIR 738
+ EA + + Q + +N ++ + + I G + +K + R + ++ I
Sbjct: 429 SWDATREAQMALSCVFRAQRASGFNFGASHLIE---ILRGARTEKVLQRGHDQLSTFGIG 485
Query: 739 EQSQKYLATDLLWWRGLARIMENKGYI 765
A WR + R + GY+
Sbjct: 486 A------ALSEPEWRAIFRQLVAYGYL 506
>gi|349702223|ref|ZP_08903852.1| ATP-dependent DNA helicase RecQ [Gluconacetobacter europaeus LMG
18494]
Length = 611
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 130/222 (58%), Gaps = 20/222 (9%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+L + FG + Q++A+ +A DCLVL TG GKS+C+Q+PAL +VISPLI
Sbjct: 14 VLAEVFGFPDFRGLQQQAVDEVMAGRDCLVLMPTGGGKSVCYQVPALARPGTGLVISPLI 73
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIRLIKP--L 278
+LM DQ + L + GV A L S Q + +V + G I+YV PE RL+ P L
Sbjct: 74 ALMDDQVAALRQLGVNAGALHSEQEADDGARVRSDLMAGRLDILYVSPE---RLLSPGML 130
Query: 279 QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338
+RL +++ AIDE HC+S WGH+FRP+YR L+ L ++F ++P +ALTA
Sbjct: 131 ERLGRLT-LSIIAIDEAHCISAWGHEFRPEYRELAALPQHFP---------NVPRIALTA 180
Query: 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380
TA + R DIL +L M T + SF RPNL +VK KTS
Sbjct: 181 TADARTRTDILDALAMPDAT-VLKASFHRPNLDIAVK-PKTS 220
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 83/167 (49%), Gaps = 4/167 (2%)
Query: 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574
+I+Y +R +T IA+ L G G A ++A L + R F + V+VATIAFGM
Sbjct: 237 SIVYCGSRSKTERIARSLAGKGYVALPFHAGLSPVEKRAALMRFRSGEPVVIVATIAFGM 296
Query: 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---LPSRRSE 631
GID+ +VR ++H P S E YYQ+ GRAGRDG A+ VL M L +
Sbjct: 297 GIDRPDVRAVVHLDMPSSPEGYYQQIGRAGRDGEQAETVLLYGGDDMARARYWLEQSNAP 356
Query: 632 DQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVC 678
+ K+ + T+ CR + L+ FGE+ C CD C
Sbjct: 357 EAQKRIMSARLEAMIALTETTGCRTQALLSCFGEELP-AACGHCDNC 402
>gi|161486585|ref|NP_935980.2| ATP-dependent DNA helicase RecQ [Vibrio vulnificus YJ016]
Length = 611
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 143/261 (54%), Gaps = 20/261 (7%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
SD + S+L + FG+ + + Q+ + A + D LV+ TG GKSLC+QIPAL+
Sbjct: 10 SDASMTPQSVLSQVFGYQTFREGQQSVIEAAVEGKDSLVIMPTGGGKSLCYQIPALVRPG 69
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTA-CFLGSGQPDN--KVEQKALRGMYSIIYVCPETV 271
+ +VISPLISLM DQ +L +GV A C + D V + G ++YV PE V
Sbjct: 70 ITLVISPLISLMKDQVDQLKANGVAAECVNSTLSRDALLSVYNRMHAGQLKLVYVSPERV 129
Query: 272 IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331
L++ E+ +A+ A+DE HC+S+WGHDFRP+Y L L+ +F +
Sbjct: 130 --LMRDFIERLENLPLAMIAVDEAHCISQWGHDFRPEYAALGQLKHHFP---------HV 178
Query: 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASY---K 386
P MALTATA R+DIL LH+++ + L SF RPN+R+ + KH S Y +
Sbjct: 179 PFMALTATADDATRKDILSRLHLNEPHVY-LGSFDRPNIRYDLVEKHKPVSQVIRYLESQ 237
Query: 387 KDFCQLIDIYTKKKKTGEKEK 407
K C +I ++KK EK
Sbjct: 238 KGNCGIIYCGSRKKVEMLTEK 258
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 149/291 (51%), Gaps = 17/291 (5%)
Query: 487 DRSFERTDLL--NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544
DR R DL+ +KP ++ E + IIY +RK+ + + LC ++AA Y+A
Sbjct: 212 DRPNIRYDLVEKHKPVSQVIRYLESQKGNCGIIYCGSRKKVEMLTEKLCNNHIRAAGYHA 271
Query: 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAG 604
+ + V F + +++VVAT+AFGMGI+K NVR ++H+ P+++E+YYQE GRAG
Sbjct: 272 GMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAG 331
Query: 605 RDGHLADCVLY---ANLSSMPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVE 661
RDG A+ ++ A+++ + +L + Q + L+ + CR ++L+
Sbjct: 332 RDGLPAEAMMLYDPADITWLRRMLDEKDDGPQKQVESHKLNAMSAFA-EAQTCRRQVLLN 390
Query: 662 YFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKK 721
YFGE + + C CD+C+D PP+ + EEA + + N QS M + G++
Sbjct: 391 YFGE-YREKPCGNCDICLD-PPKHFDATEEARKALSCVYRVN-QSFGMGYVVEVLRGMQN 447
Query: 722 QKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYIREGDDR 771
+ + + K+ + R+ S Y W + R + +KG + + R
Sbjct: 448 IRIREHGHDKISTYGLGRDHSHDY-------WVSIFRQLIHKGLLFQNITR 491
>gi|392421673|ref|YP_006458277.1| ATP-dependent DNA helicase RecQ [Pseudomonas stutzeri CCUG 29243]
gi|390983861|gb|AFM33854.1| ATP-dependent DNA helicase RecQ [Pseudomonas stutzeri CCUG 29243]
Length = 707
Score = 159 bits (403), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 130/220 (59%), Gaps = 19/220 (8%)
Query: 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219
+ +LK FG+ + + Q + + D LVL TG GKSLC+Q+PALL + VV+
Sbjct: 4 QAQRILKDVFGYDAFRGNQGAIIERVGSGGDALVLMPTGGGKSLCYQVPALLREGLAVVV 63
Query: 220 SPLISLMHDQCSKLSKHGVTACFLG---SGQPDNKVEQKALRGMYSIIYVCPETVI--RL 274
SPLI+LM DQ + L + GV+A L S ++ ++ R ++Y+ PE ++ R+
Sbjct: 64 SPLIALMDDQVATLDELGVSAVALNSTLSADEQREIAERIRRSEIKMLYLAPERLVQPRM 123
Query: 275 IKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLM 334
+ LQRL IALFAIDE HCVS+WGHDFRP+Y +L L E F +P +
Sbjct: 124 LAFLQRLE----IALFAIDEAHCVSQWGHDFRPEYMQLGQLAELFPG---------VPRI 170
Query: 335 ALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
ALTATA + RE+I++ LH+ +F L+SF RPN+ + +
Sbjct: 171 ALTATADKRTREEIVQRLHLENAERF-LSSFDRPNIFYRI 209
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 109/204 (53%), Gaps = 14/204 (6%)
Query: 489 SFERTDLLNK--PAER-----LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ + P E+ L L E D I+Y +RK+ +A +L G A
Sbjct: 199 SFDRPNIFYRIVPKEQPRKQLLGFLAERRGDA-GIVYCMSRKKVDDLAAFLSEQGFPALP 257
Query: 542 YNASLPKSQLRRVHTE-FHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEA 600
Y+A LP ++LR H + F + ++VATIAFGMGIDK NVR + H P+SLEAYYQE
Sbjct: 258 YHAGLP-NELRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDLPKSLEAYYQET 316
Query: 601 GRAGRDGHLADCVLYANLSS---MPTLLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAK 657
GRAGRDG AD + L + +L + +++ K+ + D + CR +
Sbjct: 317 GRAGRDGLPADAWMAYGLQDVIFLKQMLNNSEGDERHKRVEQHKLDAMLALCEETRCRRQ 376
Query: 658 ILVEYFGEDFSHEKCQLCDVCVDG 681
L+ YF E+ + C CD CVDG
Sbjct: 377 TLLAYFDEELP-KPCGHCDNCVDG 399
>gi|375108194|ref|ZP_09754455.1| ATP-dependent DNA helicase RecQ [Burkholderiales bacterium
JOSHI_001]
gi|374668925|gb|EHR73710.1| ATP-dependent DNA helicase RecQ [Burkholderiales bacterium
JOSHI_001]
Length = 634
Score = 159 bits (403), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 127/221 (57%), Gaps = 19/221 (8%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK----VVVV 218
++L++ FG+ + + Q+ + A D LVL TG GKSLC+Q+PAL+ V +V
Sbjct: 19 AVLQQVFGYGAFRGQQQAIVEHVCAGGDALVLMPTGGGKSLCYQVPALVRHARGQGVALV 78
Query: 219 ISPLISLMHDQCSKLSKHGVTACFLGS---GQPDNKVEQKALRGMYSIIYVCPETVI--R 273
+SPLI+LMHDQ L + GV A FL S G +VE++ L G ++Y PE ++ R
Sbjct: 79 VSPLIALMHDQVGALEEAGVHAAFLNSTLDGDEARQVERELLSGRLVVLYAAPERILTPR 138
Query: 274 LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPL 333
+ L+ L E +L AIDE HCVS+WGHDFR +Y LS L E F + +P
Sbjct: 139 FLAMLESLHERGQFSLLAIDEAHCVSQWGHDFREEYLGLSQLHERFPS---------VPR 189
Query: 334 MALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
+ALTATA R DI+ L + FV SF RPN+R+++
Sbjct: 190 LALTATADSHTRADIVARLALQDAQAFV-ASFDRPNIRYTI 229
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 138/302 (45%), Gaps = 37/302 (12%)
Query: 489 SFERTDLLNKPAER-------LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541
SF+R ++ E+ L +Q+ E IIY +RK+ A +L V A
Sbjct: 219 SFDRPNIRYTIVEKDDARKQLLRFIQDDHEGDAGIIYCQSRKKVEETAAWLNDNEVSALP 278
Query: 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601
Y+A L RR F + V+VATIAFGMGIDK +VR + H P+++E YYQE G
Sbjct: 279 YHAGLDADVRRRHQDRFLREEGIVMVATIAFGMGIDKPDVRFVAHLDLPKNIEGYYQETG 338
Query: 602 RAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQA--YRMLS----DCFRYGMNTSCCR 655
RAGRDG AD + L+ + + RR D++ A ++ L + T CR
Sbjct: 339 RAGRDGLAADAWMAYGLADV---VNQRRMIDESPAADEFKRLQVQKLEALLAMAETHQCR 395
Query: 656 AKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGI 715
L+ YFGED + C CD C+ PP + E A + I + + GI
Sbjct: 396 RVRLLGYFGED--SQPCGNCDNCI-APPATWDATEAARKALSCIYRFRQHG-------GI 445
Query: 716 YSGIKKQKFMDRPNLKMFVSKIREQSQKYLAT-----DL--LWWRGLARIMENKGYIR-E 767
G +D K K R+ + L+T DL WRG+ R + G+++ E
Sbjct: 446 --GFGAGHLIDVLRGKS-TDKTRQHGHEALSTFGVGADLSEQQWRGVIRQLLALGHVQAE 502
Query: 768 GD 769
G+
Sbjct: 503 GE 504
>gi|344284334|ref|XP_003413923.1| PREDICTED: Bloom syndrome protein [Loxodonta africana]
Length = 1429
Score = 159 bits (403), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 128/219 (58%), Gaps = 18/219 (8%)
Query: 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 223
+ K FG + + Q EA++A L DC +L TG GKSLC+Q+PA + V +VISPL
Sbjct: 670 IFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACIAPGVTIVISPLR 729
Query: 224 SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR-----GMYSIIYVCPETVI---RLI 275
SL+ DQ KL+ + A +L + D++ L+ + ++YV PE V RLI
Sbjct: 730 SLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLI 789
Query: 276 KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMA 335
L+ L + +A F IDE HCVS+WGHDFR DY+R+++LR+ F +P+MA
Sbjct: 790 STLENLYQRTLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPL---------VPVMA 840
Query: 336 LTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
LTATA +V++DIL L + K F + SF R NL++ V
Sbjct: 841 LTATANPRVQKDILTQLKILKPQVFSM-SFNRHNLKYYV 878
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 117/208 (56%), Gaps = 15/208 (7%)
Query: 509 PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV-HTEFHENKLEVVV 567
P + G IIY +R+E ++A+ L G+ A AY+A L V H +++ +V+
Sbjct: 899 PYDSG--IIYCLSRRECDTMAETLKKNGLAALAYHAGLSDCARDEVQHKWINQDGCQVIC 956
Query: 568 ATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL---YANLSSMPTL 624
AT+AFGMGIDK +VR +IH P+S+E YYQE+GRAGRDG ++ C+L Y +++ + L
Sbjct: 957 ATVAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRL 1016
Query: 625 LPSRRSEDQ-TKQA-YRMLSDCFRYGMNTSCCRAKILVEYFGED-FSHEKCQL-----CD 676
+ + + +Q TK+ + L Y N + CR L+ YFGE+ F+ C+ CD
Sbjct: 1017 ILTEKDGNQHTKETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPYFCKKYPEVSCD 1076
Query: 677 VCVDGPP-EMKNLKEEANILMQVIAAYN 703
C + +++ ++ +++ + YN
Sbjct: 1077 NCCKTKDFKTRDVTDDVKNIVRFVQEYN 1104
>gi|367477517|ref|ZP_09476866.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. ORS 285]
gi|365270186|emb|CCD89334.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. ORS 285]
Length = 624
Score = 159 bits (403), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 139/240 (57%), Gaps = 19/240 (7%)
Query: 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGK 214
+D + ++L FG + Q++ + +CLVL TG GKSLC+Q+PALL
Sbjct: 9 TDTADRALAVLHSVFGLPGFRGAQEKVIWHVAEGGNCLVLMPTGGGKSLCYQLPALLRKG 68
Query: 215 VVVVISPLISLMHDQCSKLSKHGVTACFLGSG---QPDNKVEQKALRGMYSIIYVCPETV 271
+V+SPLI+LM DQ + L + GV A L S + ++VE++ + G ++YV PE
Sbjct: 69 CGIVVSPLIALMRDQVAGLIEAGVNAAVLNSTLSREEADEVERRLIAGDLDLLYVAPE-- 126
Query: 272 IRLIKP-LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330
RL+ P L E IALFAIDE HCVS+WGHDFRP+Y LSV+ E F D
Sbjct: 127 -RLVTPRCLSLLERADIALFAIDEAHCVSQWGHDFRPEYIGLSVIAERFP---------D 176
Query: 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV--KHSKTSSRASYKKD 388
+P +ALTATA R++I + L ++ +FV SF RPN+R+ + KH+ + ++ ++
Sbjct: 177 VPRIALTATADELTRKEIAERLSLTDAPQFV-ASFDRPNIRYEIVDKHNGPAQLKAFIRE 235
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 115/220 (52%), Gaps = 11/220 (5%)
Query: 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
DR R +E D N PA+ + ++E ++Y +R + A L G+ A Y
Sbjct: 211 DRPNIR-YEIVDKHNGPAQLKAFIRERHPGDAGVVYCLSRAKVEDTAAALTEAGITAIPY 269
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A L + R F VVVAT+AFGMGIDK +VR + H P+S+EAYYQE GR
Sbjct: 270 HAGLDPAVRSRNQDRFINEDGVVVVATVAFGMGIDKPDVRFVAHLDLPKSIEAYYQETGR 329
Query: 603 AGRDGHLADCVLYANLSSMPTLLPSRRSEDQT--KQAYRMLS----DCFRYGMNTSCCRA 656
AGRDG + + LS ++ RR D++ +A++ +S D T+ CR
Sbjct: 330 AGRDGKASTAWMAFGLSD---IVQQRRMIDESTGAEAFKRMSIRKLDALVALAETAGCRR 386
Query: 657 KILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILM 696
K+L+ YFGE + E C CD CV PP+M++ K A L+
Sbjct: 387 KLLLSYFGESPAGENCGNCDNCVS-PPKMRDGKVIAQKLL 425
>gi|262273198|ref|ZP_06051014.1| ATP-dependent DNA helicase RecQ [Grimontia hollisae CIP 101886]
gi|262222776|gb|EEY74085.1| ATP-dependent DNA helicase RecQ [Grimontia hollisae CIP 101886]
Length = 616
Score = 159 bits (403), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 133/215 (61%), Gaps = 15/215 (6%)
Query: 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222
++L++ FG+ S ++ QKE + A + D LV+ TG GKSLC+QIPAL+ V +VISPL
Sbjct: 18 TVLQQVFGYHSYRDGQKEIIDATIGGRDALVIMPTGGGKSLCYQIPALVRDGVTIVISPL 77
Query: 223 ISLMHDQCSKLSKHGV-TACFLGSGQPDNKVEQ-KALR-GMYSIIYVCPETVIRLIKPLQ 279
ISLM DQ +L +GV AC S P+++ + +ALR G ++YV PE + L++
Sbjct: 78 ISLMKDQVDQLLANGVQAACLNSSMTPESQSDTWQALRNGNLKLLYVSPERI--LMRDFI 135
Query: 280 RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339
++ + L A+DE HC+S+WGHDFRP+Y +L L+++F +P+MALTAT
Sbjct: 136 ERLQAVTLGLIAVDEAHCISQWGHDFRPEYAQLGSLKQHFPG---------VPVMALTAT 186
Query: 340 ATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374
A R+DI + L + L SF RPN+R+++
Sbjct: 187 ADDTTRQDICQRLALVD-PHIYLGSFDRPNIRYTL 220
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 149/287 (51%), Gaps = 21/287 (7%)
Query: 489 SFERTDLL------NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542
SF+R ++ +KP +L+ I+Y +RK +A+ L G ++AAAY
Sbjct: 210 SFDRPNIRYTLVEKHKPLAQLTQFLATQSGQSGIVYCNSRKRVEQVAEKLMGSNIRAAAY 269
Query: 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602
+A + Q V F + +++VVAT+AFGMGI+K NVR ++HY P+++E+YYQE GR
Sbjct: 270 HAGMTADQRAWVQEAFQRDDVQIVVATVAFGMGINKPNVRFVVHYDIPRNIESYYQETGR 329
Query: 603 AGRDGHLADCVLYANLSSMPTL---LPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKIL 659
AGRDG A+ +L+ + S + L L + +Q + L+ + CR +L
Sbjct: 330 AGRDGLPAEAILFYDPSDIGWLHRCLEEKPDGEQKRVESHKLNAMGAFA-EALTCRRLVL 388
Query: 660 VEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGI 719
+ YFGE + +E C CD+C+D PP + + E+A + + N Q+ + + G+
Sbjct: 389 LNYFGE-YRNEPCGNCDICLD-PPTLFDGTEQAQKALSCVYRVN-QNFGIGYTVEVLRGM 445
Query: 720 KKQKFMDRPNLKMFVSKI-REQSQKYLATDLLWWRGLARIMENKGYI 765
+ Q+ + + K+ + + S +Y W + R + ++GY+
Sbjct: 446 QNQRIKEHGHDKISTYGLGKAFSHEY-------WVSIFRQLIHRGYL 485
>gi|281206277|gb|EFA80466.1| ATP-dependent DNA helicase RecQ family protein [Polysphondylium
pallidum PN500]
Length = 842
Score = 159 bits (403), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 139/249 (55%), Gaps = 27/249 (10%)
Query: 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVV 216
W+ V + FG+ L+ Q +A+++ L D V TG GKSLCFQ+PA++ V
Sbjct: 377 WDRFVEGCNRLVFGNERLRPLQSDAINSVLYRRDTFVSLPTGGGKSLCFQLPAIIDSGVT 436
Query: 217 VVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGM-------YSIIYVCPE 269
+VISPL++LM DQ SKL + GV C L S P ++ ++K ++ + Y ++YV PE
Sbjct: 437 LVISPLLALMFDQLSKLLQLGVPTCALNSSVPVSE-KKKIIKELLDPAGCPYKLLYVTPE 495
Query: 270 TV--IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
+ I L+ L + + IDE HC+S+WGHDFR DYR+LS RE F
Sbjct: 496 RMKTQEFIDILEHLNNTSQLKRLVIDEAHCISEWGHDFRKDYRKLSKFREMFP------- 548
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKK 387
+IP++ALTATAT +V DI + L M T + SF R NL++ V+ + S +
Sbjct: 549 --NIPIVALTATATPKVELDIKQQLSM-HNTINIRGSFIRSNLKYEVR------KKSTEP 599
Query: 388 DFCQLIDIY 396
+FC DIY
Sbjct: 600 EFC-FNDIY 607
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 95/173 (54%), Gaps = 10/173 (5%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y T E S+ +YL G+ Y+ASL +Q + K ++V TIAFGMG
Sbjct: 620 IVYCSTIAECESLCEYLTDRGLSVDFYHASLNAAQRVDTQERWITGKFKIVCTTIAFGMG 679
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTLL--PSRRSEDQ 633
IDK + R +IH+ P S+E+YYQ+ GRAGRDG L+DC+LY N + + +L + Q
Sbjct: 680 IDKPDTRFVIHHSIPSSIESYYQQTGRAGRDGKLSDCILYYNKNDIRKMLKISTMGIVAQ 739
Query: 634 TKQAYRMLSDCFRYGMNT-------SCCRAKILVEYFGEDFSHEKCQLCDVCV 679
+ + Y+ + + ++T S CR L+EYFGE+ K +CD C
Sbjct: 740 SHEEYQKIMESKTENIDTVTSYCVGSECRRVSLMEYFGEETKPCKT-MCDNCT 791
>gi|359458485|ref|ZP_09247048.1| ATP-dependent DNA helicase RecQ [Acaryochloris sp. CCMEE 5410]
Length = 739
Score = 159 bits (403), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 97/258 (37%), Positives = 149/258 (57%), Gaps = 30/258 (11%)
Query: 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTG 213
GSD++ + LK +FG+ + Q+ + A L D +V+ TG GKSLCFQ+P LL
Sbjct: 9 GSDFK-SLEEALKHYFGYDQFRVGQRPVIEAALQQQDLMVVMPTGGGKSLCFQLPGLLLP 67
Query: 214 KVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS----IIYVCPE 269
+ VVISPLI+LM DQ + L + + A FL S D ++ + +YS ++YV PE
Sbjct: 68 GLTVVISPLIALMQDQVTTLQVNDIPATFLNSS-IDAATARQRISEIYSGKIKLLYVAPE 126
Query: 270 TVIR--LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL 327
++ + L ++ G+A FA+DE HCVS+WGHDFRP+YRRL+ +R+ +
Sbjct: 127 RLLHESFLNLLDQVQAQVGLAAFAVDEAHCVSEWGHDFRPEYRRLAEVRQRYA------- 179
Query: 328 KFDIPLMALTATATIQVREDILKSLHMSKGTKFV-LTSFFRPNLRFSVKHSKTSSRASYK 386
+P+ LTATAT +VR+DI++ L + + FV + SF RPNL + V + SR +Y
Sbjct: 180 --QVPVYTLTATATERVRQDIIQQLQLRQ--PFVHVASFNRPNLYYEV---RPKSRQAYA 232
Query: 387 KDFCQLIDIYTKKKKTGE 404
D+Y + ++ G+
Sbjct: 233 -------DLYREIRQHGQ 243
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 134/265 (50%), Gaps = 20/265 (7%)
Query: 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575
I+Y +R+E I+ L G G++A Y+A + S F + ++V+VAT+AFGMG
Sbjct: 247 IVYCLSRREVNEISARLQGDGIRALPYHAGMSDSARTLNQERFIRDDVQVMVATVAFGMG 306
Query: 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL--LPSRRS--- 630
IDK +VR +IHY P+++E YYQEAGRAGRDG + C+L+ + + TL L R+
Sbjct: 307 IDKPDVRFVIHYNLPRNIEGYYQEAGRAGRDGEPSKCLLFFSTKDIHTLEWLIERKVDPE 366
Query: 631 -----EDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEM 685
E++ + A + L Y +T CR + + YFGE F + C CD C P +
Sbjct: 367 TGNPLENEQRIARQQLRQVIDYAEST-VCRRTVQLGYFGETFGGD-CGGCDNCCH-PKPV 423
Query: 686 KNLKEEANILMQVIAAYNEQSNSMDDDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYL 745
++ A L+ +A E+ M + G + QK + R + ++ I +
Sbjct: 424 EDWTIPAQKLLSCVARCQERYG-MSYVIDVLRGSRNQKVLQRRHDQLSTYGIGKDK---- 478
Query: 746 ATDLLWWRGLARIMENKGYIREGDD 770
+ WR L R + ++G + E D
Sbjct: 479 --TVDQWRLLGRTLLHQGLVAETTD 501
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,947,592,966
Number of Sequences: 23463169
Number of extensions: 501353474
Number of successful extensions: 1480971
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 23353
Number of HSP's successfully gapped in prelim test: 2811
Number of HSP's that attempted gapping in prelim test: 1410978
Number of HSP's gapped (non-prelim): 54094
length of query: 774
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 623
effective length of database: 8,816,256,848
effective search space: 5492528016304
effective search space used: 5492528016304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)