Query 004098
Match_columns 774
No_of_seqs 590 out of 3621
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 17:31:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03137 ATP-dependent DNA hel 100.0 2.4E-88 5.1E-93 783.2 49.5 488 147-769 434-950 (1195)
2 COG0514 RecQ Superfamily II DN 100.0 3.3E-89 7.1E-94 752.1 40.3 471 160-770 4-482 (590)
3 PRK11057 ATP-dependent DNA hel 100.0 3.7E-79 8.1E-84 706.6 53.7 475 154-770 6-487 (607)
4 KOG0351 ATP-dependent DNA heli 100.0 2.3E-80 5E-85 719.5 32.1 481 157-771 248-752 (941)
5 TIGR01389 recQ ATP-dependent D 100.0 5.1E-77 1.1E-81 691.3 49.2 467 162-770 2-476 (591)
6 TIGR00614 recQ_fam ATP-depende 100.0 9.4E-75 2E-79 653.7 45.5 442 164-733 2-464 (470)
7 KOG0353 ATP-dependent DNA heli 100.0 2.4E-74 5.2E-79 578.2 30.5 425 148-700 69-547 (695)
8 KOG0352 ATP-dependent DNA heli 100.0 1.2E-72 2.7E-77 574.2 29.2 408 158-680 4-432 (641)
9 KOG0331 ATP-dependent RNA heli 100.0 1.3E-59 2.9E-64 508.4 27.7 339 151-620 92-449 (519)
10 PTZ00110 helicase; Provisional 100.0 3.3E-54 7.1E-59 492.1 40.8 333 154-620 134-485 (545)
11 KOG0330 ATP-dependent RNA heli 100.0 4.3E-55 9.4E-60 443.0 23.8 335 154-621 65-409 (476)
12 KOG0333 U5 snRNP-like RNA heli 100.0 4.2E-54 9.1E-59 449.8 29.8 342 154-621 249-626 (673)
13 KOG0336 ATP-dependent RNA heli 100.0 1.5E-53 3.3E-58 432.4 23.9 375 115-621 184-574 (629)
14 COG0513 SrmB Superfamily II DN 100.0 1.3E-52 2.9E-57 474.3 32.6 329 154-618 33-379 (513)
15 PRK04837 ATP-dependent RNA hel 100.0 2.1E-52 4.6E-57 467.4 31.1 330 154-617 12-360 (423)
16 PRK10590 ATP-dependent RNA hel 100.0 7.6E-52 1.7E-56 465.9 33.5 329 155-619 6-352 (456)
17 PLN00206 DEAD-box ATP-dependen 100.0 3.2E-51 6.9E-56 466.3 35.7 333 153-619 124-475 (518)
18 PRK04537 ATP-dependent RNA hel 100.0 6.3E-51 1.4E-55 466.5 34.0 334 154-620 13-365 (572)
19 PRK11776 ATP-dependent RNA hel 100.0 8.2E-51 1.8E-55 459.5 33.8 329 155-619 9-349 (460)
20 PRK01297 ATP-dependent RNA hel 100.0 1.6E-50 3.5E-55 458.3 34.7 331 154-618 91-441 (475)
21 PRK11634 ATP-dependent RNA hel 100.0 1.8E-50 3.8E-55 465.1 35.3 329 156-620 12-353 (629)
22 PRK11192 ATP-dependent RNA hel 100.0 3.2E-50 7E-55 451.9 34.4 330 155-618 6-351 (434)
23 KOG0342 ATP-dependent RNA heli 100.0 4.6E-51 9.9E-56 426.0 22.9 341 153-622 85-440 (543)
24 KOG0335 ATP-dependent RNA heli 100.0 1.1E-50 2.5E-55 431.2 22.8 335 154-617 78-442 (482)
25 KOG0345 ATP-dependent RNA heli 100.0 7.7E-50 1.7E-54 413.7 28.2 340 153-621 9-366 (567)
26 KOG0338 ATP-dependent RNA heli 100.0 7.7E-51 1.7E-55 423.6 20.4 338 154-621 185-535 (691)
27 KOG0328 Predicted ATP-dependen 100.0 6.7E-50 1.5E-54 388.6 23.0 336 154-622 31-376 (400)
28 KOG0348 ATP-dependent RNA heli 100.0 1.3E-49 2.9E-54 416.6 25.6 374 154-622 140-557 (708)
29 KOG0347 RNA helicase [RNA proc 100.0 3.8E-49 8.2E-54 414.4 24.8 364 154-622 185-573 (731)
30 TIGR03817 DECH_helic helicase/ 100.0 6.3E-48 1.4E-52 452.4 37.1 355 145-617 9-384 (742)
31 KOG0341 DEAD-box protein abstr 100.0 6.3E-50 1.4E-54 403.5 16.8 339 147-620 167-529 (610)
32 KOG0340 ATP-dependent RNA heli 100.0 1E-48 2.2E-53 392.3 24.4 339 155-622 12-364 (442)
33 KOG0339 ATP-dependent RNA heli 100.0 2.2E-48 4.7E-53 404.5 27.4 344 147-622 218-578 (731)
34 PTZ00424 helicase 45; Provisio 100.0 9.3E-48 2E-52 428.5 31.0 331 155-620 33-375 (401)
35 KOG0343 RNA Helicase [RNA proc 100.0 6.4E-48 1.4E-52 405.0 24.6 340 153-624 72-427 (758)
36 KOG0346 RNA helicase [RNA proc 100.0 8.3E-47 1.8E-51 387.6 21.8 337 153-621 22-412 (569)
37 KOG0326 ATP-dependent RNA heli 100.0 7.9E-47 1.7E-51 372.9 17.4 329 158-621 93-431 (459)
38 KOG0334 RNA helicase [RNA proc 100.0 3.3E-45 7.2E-50 414.5 21.4 341 147-620 360-721 (997)
39 COG1111 MPH1 ERCC4-like helica 100.0 2.8E-44 6.1E-49 378.4 20.9 426 170-619 12-481 (542)
40 PRK13767 ATP-dependent helicas 100.0 1.2E-42 2.7E-47 415.8 37.1 336 156-616 17-395 (876)
41 KOG0350 DEAD-box ATP-dependent 100.0 2.2E-43 4.7E-48 367.8 18.9 345 161-622 148-543 (620)
42 PRK02362 ski2-like helicase; P 100.0 1.8E-41 3.8E-46 402.5 34.6 336 156-619 7-397 (737)
43 KOG0332 ATP-dependent RNA heli 100.0 9.1E-42 2E-46 344.2 24.3 331 154-620 94-444 (477)
44 COG1201 Lhr Lhr-like helicases 100.0 1.8E-40 3.9E-45 379.1 32.9 336 155-617 6-360 (814)
45 KOG4284 DEAD box protein [Tran 100.0 2.4E-41 5.2E-46 360.5 23.4 331 157-619 32-379 (980)
46 TIGR00580 mfd transcription-re 100.0 5.5E-40 1.2E-44 388.4 35.0 314 158-619 437-770 (926)
47 KOG0344 ATP-dependent RNA heli 100.0 2E-41 4.3E-46 362.3 20.0 342 154-623 140-499 (593)
48 KOG0327 Translation initiation 100.0 1.4E-41 3E-46 346.8 17.2 331 156-621 32-372 (397)
49 PRK00254 ski2-like helicase; P 100.0 3.9E-40 8.4E-45 390.1 31.5 331 156-620 7-389 (720)
50 PRK14701 reverse gyrase; Provi 100.0 2.1E-40 4.6E-45 408.2 27.3 326 159-616 66-453 (1638)
51 PRK10917 ATP-dependent DNA hel 100.0 8.3E-39 1.8E-43 374.2 34.9 310 160-617 249-587 (681)
52 PRK10689 transcription-repair 100.0 1.8E-38 3.9E-43 383.3 35.8 311 160-618 588-918 (1147)
53 KOG0337 ATP-dependent RNA heli 100.0 1.3E-40 2.8E-45 340.6 13.6 336 156-624 27-373 (529)
54 PRK09751 putative ATP-dependen 100.0 8.4E-39 1.8E-43 387.2 31.7 313 193-616 1-382 (1490)
55 PRK01172 ski2-like helicase; P 100.0 2.8E-38 6E-43 372.8 34.0 328 156-618 7-377 (674)
56 TIGR00643 recG ATP-dependent D 100.0 5.3E-38 1.2E-42 365.2 35.4 316 157-617 220-564 (630)
57 TIGR02621 cas3_GSU0051 CRISPR- 100.0 9.2E-37 2E-41 350.7 33.9 322 162-617 5-389 (844)
58 KOG0354 DEAD-box like helicase 100.0 6.5E-38 1.4E-42 349.3 22.2 422 170-620 59-530 (746)
59 PRK09401 reverse gyrase; Revie 100.0 6.7E-36 1.5E-40 361.8 32.0 307 160-604 68-429 (1176)
60 TIGR03158 cas3_cyano CRISPR-as 100.0 7.1E-35 1.5E-39 316.8 31.3 299 177-604 1-357 (357)
61 TIGR01587 cas3_core CRISPR-ass 100.0 6.2E-35 1.3E-39 320.2 30.7 300 190-620 1-337 (358)
62 PHA02558 uvsW UvsW helicase; P 100.0 2.5E-34 5.5E-39 326.4 32.2 324 171-621 112-454 (501)
63 PRK13766 Hef nuclease; Provisi 100.0 9.8E-34 2.1E-38 340.3 35.2 420 171-620 13-480 (773)
64 PHA02653 RNA helicase NPH-II; 100.0 9.4E-34 2E-38 324.7 30.6 306 177-620 168-515 (675)
65 COG1205 Distinct helicase fami 100.0 1.4E-33 3E-38 332.0 32.7 335 159-617 57-420 (851)
66 PRK09200 preprotein translocas 100.0 8.6E-33 1.9E-37 318.1 34.8 418 161-620 67-542 (790)
67 PRK12898 secA preprotein trans 100.0 4.4E-33 9.6E-38 314.0 30.5 418 161-620 92-587 (656)
68 COG1202 Superfamily II helicas 100.0 1.9E-33 4.1E-38 297.5 24.9 336 153-620 197-554 (830)
69 PRK11664 ATP-dependent RNA hel 100.0 3.7E-33 8.1E-38 328.1 29.9 303 179-623 11-343 (812)
70 TIGR01970 DEAH_box_HrpB ATP-de 100.0 3.6E-33 7.7E-38 327.4 29.1 303 178-622 7-339 (819)
71 TIGR03714 secA2 accessory Sec 100.0 2.2E-32 4.8E-37 311.6 33.6 419 161-620 59-538 (762)
72 TIGR00963 secA preprotein tran 100.0 2.5E-32 5.5E-37 309.1 32.7 414 161-620 45-518 (745)
73 COG1204 Superfamily II helicas 100.0 3.8E-33 8.2E-38 323.9 26.1 331 157-617 16-406 (766)
74 TIGR01054 rgy reverse gyrase. 100.0 7.7E-32 1.7E-36 327.1 31.3 298 159-591 65-409 (1171)
75 KOG0385 Chromatin remodeling c 100.0 1.6E-32 3.4E-37 299.2 21.2 403 170-615 164-593 (971)
76 KOG0329 ATP-dependent RNA heli 100.0 3.1E-33 6.8E-38 268.6 11.8 302 154-622 46-358 (387)
77 PRK04914 ATP-dependent helicas 100.0 1.7E-31 3.7E-36 314.8 28.0 407 173-617 152-601 (956)
78 TIGR00603 rad25 DNA repair hel 100.0 2.9E-31 6.3E-36 302.6 27.0 313 173-612 255-593 (732)
79 KOG0349 Putative DEAD-box RNA 100.0 2.7E-32 5.8E-37 279.4 15.3 317 213-617 286-613 (725)
80 PLN03142 Probable chromatin-re 100.0 5.5E-31 1.2E-35 311.3 25.4 399 173-615 169-593 (1033)
81 PRK05580 primosome assembly pr 100.0 1.2E-29 2.5E-34 296.0 32.3 368 173-619 144-549 (679)
82 KOG0952 DNA/RNA helicase MER3/ 100.0 6.3E-30 1.4E-34 287.6 24.7 333 167-621 104-493 (1230)
83 PRK11131 ATP-dependent RNA hel 100.0 1.3E-29 2.8E-34 302.4 27.1 302 178-621 79-413 (1294)
84 COG1061 SSL2 DNA or RNA helica 100.0 2.7E-29 6E-34 279.6 27.8 334 173-617 36-389 (442)
85 TIGR00595 priA primosomal prot 100.0 4.3E-29 9.4E-34 281.2 25.3 348 192-617 1-379 (505)
86 KOG0947 Cytoplasmic exosomal R 100.0 5.6E-28 1.2E-32 268.8 28.3 374 165-618 290-722 (1248)
87 PRK13104 secA preprotein trans 100.0 1.3E-26 2.8E-31 266.1 31.2 420 161-620 71-588 (896)
88 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.6E-27 5.6E-32 283.9 26.4 305 179-622 73-407 (1283)
89 PRK12906 secA preprotein trans 100.0 1.9E-26 4E-31 263.8 31.5 418 160-620 68-554 (796)
90 PRK09694 helicase Cas3; Provis 100.0 9.4E-26 2E-30 264.8 38.0 331 169-608 282-664 (878)
91 KOG0384 Chromodomain-helicase 99.9 1.1E-27 2.5E-32 273.3 16.6 397 172-615 369-805 (1373)
92 COG1200 RecG RecG-like helicas 99.9 7.1E-26 1.5E-30 249.7 29.7 320 154-619 244-591 (677)
93 PRK12904 preprotein translocas 99.9 1.8E-25 4E-30 256.7 32.4 417 161-620 70-574 (830)
94 COG4581 Superfamily II RNA hel 99.9 6.6E-26 1.4E-30 263.0 26.3 358 167-618 114-536 (1041)
95 KOG0951 RNA helicase BRR2, DEA 99.9 2.9E-26 6.4E-31 260.8 22.7 332 168-622 304-705 (1674)
96 KOG0948 Nuclear exosomal RNA h 99.9 2.6E-26 5.7E-31 249.7 19.5 351 168-619 125-539 (1041)
97 COG1197 Mfd Transcription-repa 99.9 5.5E-25 1.2E-29 255.3 31.0 319 155-620 577-914 (1139)
98 PRK11448 hsdR type I restricti 99.9 3.4E-25 7.3E-30 267.4 28.9 345 173-607 413-801 (1123)
99 PRK13107 preprotein translocas 99.9 3.1E-24 6.7E-29 245.8 28.6 417 161-620 71-592 (908)
100 PRK12899 secA preprotein trans 99.9 5.5E-24 1.2E-28 243.9 30.5 127 168-299 84-228 (970)
101 KOG0950 DNA polymerase theta/e 99.9 2E-24 4.2E-29 243.0 21.4 351 157-622 207-614 (1008)
102 KOG0387 Transcription-coupled 99.9 1.4E-24 3E-29 238.9 18.6 395 173-615 205-652 (923)
103 COG4098 comFA Superfamily II D 99.9 2E-22 4.4E-27 202.7 29.8 315 173-644 97-430 (441)
104 cd00268 DEADc DEAD-box helicas 99.9 7.3E-24 1.6E-28 213.3 19.6 183 154-353 3-197 (203)
105 PF00270 DEAD: DEAD/DEAH box h 99.9 6.4E-23 1.4E-27 199.9 15.9 156 175-343 1-165 (169)
106 PRK12900 secA preprotein trans 99.9 5E-21 1.1E-25 220.2 25.2 122 497-620 582-712 (1025)
107 TIGR00631 uvrb excinuclease AB 99.9 5.1E-20 1.1E-24 212.6 32.3 107 511-618 441-552 (655)
108 KOG4150 Predicted ATP-dependen 99.9 2.1E-20 4.5E-25 198.0 19.2 351 156-622 270-643 (1034)
109 KOG0389 SNF2 family DNA-depend 99.8 6.3E-21 1.4E-25 209.9 14.1 417 173-615 399-882 (941)
110 COG1643 HrpA HrpA-like helicas 99.8 1E-19 2.2E-24 210.8 23.7 308 175-625 52-393 (845)
111 PRK12326 preprotein translocas 99.8 1.7E-18 3.7E-23 194.4 32.0 416 161-620 67-548 (764)
112 KOG0386 Chromatin remodeling c 99.8 5E-21 1.1E-25 215.5 11.7 413 172-616 393-833 (1157)
113 TIGR00348 hsdR type I site-spe 99.8 2.8E-19 6.2E-24 208.9 26.5 150 174-342 239-404 (667)
114 PRK05298 excinuclease ABC subu 99.8 1.3E-18 2.8E-23 202.7 30.8 107 511-618 445-556 (652)
115 COG1110 Reverse gyrase [DNA re 99.8 6.3E-19 1.4E-23 199.7 25.6 297 160-591 70-417 (1187)
116 KOG0949 Predicted helicase, DE 99.8 2.4E-19 5.2E-24 200.8 21.5 150 173-342 511-673 (1330)
117 KOG0390 DNA repair protein, SN 99.8 3.5E-19 7.6E-24 202.1 21.9 410 173-615 238-701 (776)
118 COG1198 PriA Primosomal protei 99.8 1.9E-18 4.2E-23 197.5 27.2 372 173-621 198-605 (730)
119 COG0556 UvrB Helicase subunit 99.8 2.5E-18 5.4E-23 182.7 25.9 106 511-617 445-555 (663)
120 COG1203 CRISPR-associated heli 99.8 1.3E-18 2.7E-23 205.6 26.5 312 173-617 195-548 (733)
121 KOG0392 SNF2 family DNA-depend 99.8 2.2E-19 4.8E-24 205.1 18.0 412 173-615 975-1448(1549)
122 PRK13103 secA preprotein trans 99.8 2.4E-18 5.1E-23 197.9 25.7 417 161-620 71-592 (913)
123 KOG0922 DEAH-box RNA helicase 99.8 3.9E-18 8.4E-23 186.9 24.8 308 176-628 54-399 (674)
124 TIGR01407 dinG_rel DnaQ family 99.8 4E-17 8.6E-22 196.9 33.1 104 511-617 673-812 (850)
125 COG4096 HsdR Type I site-speci 99.8 1.7E-17 3.7E-22 185.8 20.7 326 171-606 163-525 (875)
126 PRK12903 secA preprotein trans 99.8 7.4E-17 1.6E-21 183.6 23.5 415 161-620 67-540 (925)
127 PF00271 Helicase_C: Helicase 99.7 8.5E-18 1.8E-22 141.3 8.6 78 530-607 1-78 (78)
128 PRK12902 secA preprotein trans 99.7 1.1E-15 2.5E-20 174.7 28.2 376 161-579 74-506 (939)
129 cd00079 HELICc Helicase superf 99.7 2.3E-17 5E-22 153.2 11.8 118 498-615 13-131 (131)
130 KOG0388 SNF2 family DNA-depend 99.7 2.6E-17 5.6E-22 178.6 13.7 105 511-615 1043-1148(1185)
131 CHL00122 secA preprotein trans 99.7 2.3E-15 5E-20 172.8 30.3 375 161-578 65-490 (870)
132 KOG0391 SNF2 family DNA-depend 99.7 3.4E-16 7.4E-21 177.4 22.5 105 511-615 1275-1381(1958)
133 KOG0923 mRNA splicing factor A 99.7 1.5E-16 3.3E-21 172.3 18.6 314 162-617 254-604 (902)
134 smart00487 DEXDc DEAD-like hel 99.7 1.6E-16 3.5E-21 158.2 16.8 171 168-353 3-183 (201)
135 KOG0924 mRNA splicing factor A 99.7 4.1E-16 8.8E-21 169.2 20.1 125 511-636 562-715 (1042)
136 KOG1000 Chromatin remodeling p 99.7 2E-15 4.4E-20 158.8 23.6 378 171-616 196-598 (689)
137 KOG0926 DEAH-box RNA helicase 99.7 3.8E-16 8.3E-21 172.1 19.0 80 538-618 606-703 (1172)
138 KOG0920 ATP-dependent RNA heli 99.7 9.6E-16 2.1E-20 177.2 22.0 348 173-631 173-556 (924)
139 KOG0953 Mitochondrial RNA heli 99.7 2.6E-16 5.5E-21 167.9 15.1 266 188-616 191-474 (700)
140 PRK07246 bifunctional ATP-depe 99.7 6.5E-15 1.4E-19 175.3 28.0 103 511-617 646-781 (820)
141 COG4889 Predicted helicase [Ge 99.7 3.8E-16 8.2E-21 173.1 14.8 96 512-607 460-573 (1518)
142 KOG1123 RNA polymerase II tran 99.6 1.5E-15 3.2E-20 159.8 14.7 320 171-608 300-636 (776)
143 PF04851 ResIII: Type III rest 99.6 1.4E-15 3.1E-20 149.9 13.1 151 173-341 3-183 (184)
144 KOG4439 RNA polymerase II tran 99.6 1.7E-14 3.8E-19 157.6 21.3 420 173-615 325-852 (901)
145 TIGR03117 cas_csf4 CRISPR-asso 99.6 4.5E-13 9.8E-18 152.8 29.2 97 511-609 469-604 (636)
146 KOG1002 Nucleotide excision re 99.6 6.8E-14 1.5E-18 147.1 20.4 120 497-616 620-746 (791)
147 PRK08074 bifunctional ATP-depe 99.6 1.7E-12 3.6E-17 157.6 33.7 107 511-617 751-891 (928)
148 smart00490 HELICc helicase sup 99.6 8.3E-15 1.8E-19 123.9 9.0 81 527-607 2-82 (82)
149 COG0553 HepA Superfamily II DN 99.6 1.5E-13 3.2E-18 168.9 23.6 411 172-615 337-816 (866)
150 PRK12901 secA preprotein trans 99.6 2E-13 4.4E-18 157.9 22.2 122 497-620 612-742 (1112)
151 cd00046 DEXDc DEAD-like helica 99.5 1.8E-13 3.8E-18 128.0 12.4 136 189-340 1-144 (144)
152 KOG0951 RNA helicase BRR2, DEA 99.5 7.3E-13 1.6E-17 152.8 19.4 311 173-621 1143-1496(1674)
153 KOG0925 mRNA splicing factor A 99.5 1.2E-11 2.5E-16 130.6 24.6 317 154-619 29-387 (699)
154 COG1199 DinG Rad3-related DNA 99.4 2.5E-11 5.5E-16 143.8 28.3 104 511-617 478-615 (654)
155 PRK14873 primosome assembly pr 99.4 6.5E-12 1.4E-16 145.2 21.6 136 195-348 167-311 (665)
156 PRK11747 dinG ATP-dependent DN 99.4 1.2E-10 2.6E-15 137.3 32.2 102 512-617 534-672 (697)
157 KOG1015 Transcription regulato 99.4 4.8E-11 1E-15 134.1 23.6 125 491-615 1120-1271(1567)
158 TIGR00604 rad3 DNA repair heli 99.4 1.1E-10 2.4E-15 138.6 27.9 68 168-235 5-82 (705)
159 TIGR02562 cas3_yersinia CRISPR 99.3 3.3E-10 7.1E-15 132.4 25.8 92 515-609 759-882 (1110)
160 PF02399 Herpes_ori_bp: Origin 99.2 1.6E-09 3.4E-14 123.8 22.1 328 191-620 52-389 (824)
161 PF00176 SNF2_N: SNF2 family N 99.2 6.1E-11 1.3E-15 126.7 8.1 157 177-355 1-187 (299)
162 COG0653 SecA Preprotein transl 99.1 1.4E-08 3.1E-13 116.9 22.8 416 162-620 70-546 (822)
163 PF07652 Flavi_DEAD: Flaviviru 99.0 2.2E-10 4.8E-15 104.5 4.4 132 188-343 4-139 (148)
164 smart00488 DEXDc2 DEAD-like he 98.9 2.3E-08 4.9E-13 105.7 13.4 68 168-236 4-84 (289)
165 smart00489 DEXDc3 DEAD-like he 98.9 2.3E-08 4.9E-13 105.7 13.4 68 168-236 4-84 (289)
166 TIGR00596 rad1 DNA repair prot 98.8 1.8E-08 4E-13 118.7 10.8 80 262-356 9-93 (814)
167 PF06862 DUF1253: Protein of u 98.8 1.6E-06 3.5E-11 94.8 24.2 110 511-620 299-416 (442)
168 COG0610 Type I site-specific r 98.7 3E-07 6.4E-12 111.7 19.2 137 189-343 274-416 (962)
169 KOG1016 Predicted DNA helicase 98.7 9.7E-07 2.1E-11 98.3 20.7 118 498-615 704-843 (1387)
170 PF07517 SecA_DEAD: SecA DEAD- 98.7 1.8E-07 3.9E-12 96.2 13.0 133 161-299 66-210 (266)
171 KOG1001 Helicase-like transcri 98.5 1.1E-07 2.4E-12 109.7 6.2 102 513-614 540-643 (674)
172 KOG0952 DNA/RNA helicase MER3/ 98.5 2.9E-08 6.2E-13 114.4 0.6 169 174-356 928-1107(1230)
173 KOG0383 Predicted helicase [Ge 98.4 2.5E-08 5.4E-13 113.5 -2.8 358 173-575 295-696 (696)
174 PF09382 RQC: RQC domain; Int 98.4 2.2E-07 4.8E-12 82.8 3.8 76 687-770 1-77 (106)
175 PRK15483 type III restriction- 98.3 1.1E-05 2.4E-10 95.6 15.5 45 562-606 501-545 (986)
176 KOG2340 Uncharacterized conser 98.3 1.8E-05 4E-10 85.5 15.1 108 514-621 554-670 (698)
177 KOG0921 Dosage compensation co 98.3 4.8E-06 1E-10 94.7 11.2 106 511-617 642-772 (1282)
178 PF13307 Helicase_C_2: Helicas 97.8 8.2E-05 1.8E-09 72.1 8.7 105 511-617 8-148 (167)
179 PF13872 AAA_34: P-loop contai 97.8 0.00023 4.9E-09 73.8 11.8 157 173-343 37-223 (303)
180 TIGR00376 DNA helicase, putati 97.7 0.00038 8.1E-09 81.6 13.0 75 172-246 156-234 (637)
181 KOG1802 RNA helicase nonsense 97.6 0.00028 6.1E-09 78.5 9.8 79 168-246 405-487 (935)
182 PF12340 DUF3638: Protein of u 97.6 0.0015 3.3E-08 65.3 14.2 125 173-300 23-186 (229)
183 KOG1803 DNA helicase [Replicat 97.3 0.00063 1.4E-08 75.6 8.3 62 173-234 185-250 (649)
184 KOG1805 DNA replication helica 97.2 0.0011 2.4E-08 77.2 9.5 122 173-300 669-810 (1100)
185 PF13086 AAA_11: AAA domain; P 97.2 0.00068 1.5E-08 69.2 7.2 62 174-235 2-75 (236)
186 PF13245 AAA_19: Part of AAA d 97.2 0.0008 1.7E-08 55.6 6.1 53 181-233 2-62 (76)
187 PF13604 AAA_30: AAA domain; P 97.2 0.00054 1.2E-08 68.2 5.6 60 173-232 1-65 (196)
188 PF02562 PhoH: PhoH-like prote 97.2 0.0019 4.2E-08 64.1 9.1 54 172-225 3-61 (205)
189 PF09848 DUF2075: Uncharacteri 97.0 0.00094 2E-08 73.0 5.7 90 191-301 4-98 (352)
190 COG3587 Restriction endonuclea 96.9 0.0054 1.2E-07 70.8 10.6 54 560-613 481-536 (985)
191 PF13401 AAA_22: AAA domain; P 96.9 0.0035 7.7E-08 57.7 7.7 18 188-205 4-21 (131)
192 TIGR01448 recD_rel helicase, p 96.8 0.0086 1.9E-07 71.4 12.0 60 168-228 319-383 (720)
193 PRK12723 flagellar biosynthesi 96.8 0.037 8E-07 60.7 15.9 126 189-353 175-310 (388)
194 PRK10875 recD exonuclease V su 96.7 0.017 3.6E-07 67.3 13.0 76 159-234 137-220 (615)
195 KOG1132 Helicase of the DEAD s 96.6 0.0076 1.7E-07 69.9 9.5 103 514-617 563-720 (945)
196 KOG1131 RNA polymerase II tran 96.6 0.016 3.6E-07 63.2 11.3 68 168-235 11-89 (755)
197 TIGR01447 recD exodeoxyribonuc 96.6 0.013 2.8E-07 67.9 11.0 61 175-235 147-215 (586)
198 KOG0298 DEAD box-containing he 96.5 0.0034 7.4E-08 75.1 5.9 148 188-354 374-563 (1394)
199 PRK10536 hypothetical protein; 96.5 0.0037 8.1E-08 63.8 5.3 56 169-224 55-115 (262)
200 smart00492 HELICc3 helicase su 96.5 0.024 5.3E-07 53.0 10.3 93 525-617 4-136 (141)
201 PRK14974 cell division protein 96.4 0.12 2.6E-06 55.7 16.6 128 190-351 142-275 (336)
202 PF05970 PIF1: PIF1-like helic 96.4 0.0056 1.2E-07 67.2 6.4 51 174-224 2-61 (364)
203 smart00491 HELICc2 helicase su 96.3 0.026 5.7E-07 52.9 9.6 93 525-617 4-137 (142)
204 PF00448 SRP54: SRP54-type pro 96.3 0.14 3.1E-06 50.8 15.1 128 191-352 4-137 (196)
205 cd00009 AAA The AAA+ (ATPases 96.2 0.062 1.3E-06 49.7 11.6 19 188-206 19-37 (151)
206 PRK08727 hypothetical protein; 96.1 0.054 1.2E-06 55.5 11.4 18 285-302 92-109 (233)
207 PRK11889 flhF flagellar biosyn 96.1 0.24 5.1E-06 54.0 16.4 128 189-354 242-376 (436)
208 PRK08181 transposase; Validate 96.1 0.1 2.2E-06 54.4 13.4 44 185-229 103-149 (269)
209 PRK06526 transposase; Provisio 95.9 0.064 1.4E-06 55.6 11.2 24 183-206 93-116 (254)
210 PRK08084 DNA replication initi 95.9 0.084 1.8E-06 54.1 11.8 18 188-205 45-62 (235)
211 PF13871 Helicase_C_4: Helicas 95.7 0.023 4.9E-07 58.9 6.8 59 553-611 52-118 (278)
212 PRK06893 DNA replication initi 95.7 0.047 1E-06 55.8 9.1 50 285-345 90-139 (229)
213 COG1875 NYN ribonuclease and A 95.7 0.078 1.7E-06 56.1 10.3 60 166-225 221-288 (436)
214 TIGR02768 TraA_Ti Ti-type conj 95.6 0.082 1.8E-06 63.5 11.9 54 173-226 352-409 (744)
215 smart00382 AAA ATPases associa 95.6 0.031 6.6E-07 51.3 6.7 38 188-225 2-42 (148)
216 PF00580 UvrD-helicase: UvrD/R 95.5 0.021 4.6E-07 61.0 6.0 116 174-296 1-125 (315)
217 PF00004 AAA: ATPase family as 95.5 0.16 3.5E-06 46.3 11.2 19 191-209 1-19 (132)
218 PF05621 TniB: Bacterial TniB 95.5 0.078 1.7E-06 55.4 9.8 89 189-302 62-161 (302)
219 PF00308 Bac_DnaA: Bacterial d 95.5 0.24 5.2E-06 50.2 13.2 59 284-353 95-156 (219)
220 PRK13889 conjugal transfer rel 95.4 0.1 2.2E-06 63.8 11.9 56 170-226 344-403 (988)
221 PF06745 KaiC: KaiC; InterPro 95.4 0.24 5.2E-06 50.4 13.0 98 188-298 19-127 (226)
222 PRK12377 putative replication 95.4 0.18 3.9E-06 51.9 11.9 44 188-231 101-146 (248)
223 cd01124 KaiC KaiC is a circadi 95.3 0.21 4.5E-06 49.0 11.9 48 191-239 2-52 (187)
224 PRK05703 flhF flagellar biosyn 95.3 0.46 9.9E-06 53.2 15.7 129 188-355 221-357 (424)
225 PRK14722 flhF flagellar biosyn 95.3 0.25 5.3E-06 53.9 13.1 125 187-352 136-269 (374)
226 PRK06835 DNA replication prote 95.2 0.28 6.1E-06 52.8 13.3 40 188-227 183-224 (329)
227 COG1419 FlhF Flagellar GTP-bin 95.2 0.61 1.3E-05 50.7 15.6 135 188-362 203-345 (407)
228 PRK06921 hypothetical protein; 95.2 0.46 1E-05 49.6 14.4 17 188-204 117-133 (266)
229 PRK04296 thymidine kinase; Pro 95.1 0.087 1.9E-06 52.1 8.5 32 190-221 4-38 (190)
230 PF00627 UBA: UBA/TS-N domain; 95.1 0.045 9.8E-07 38.2 4.6 36 8-43 2-37 (37)
231 PRK05642 DNA replication initi 95.0 0.22 4.7E-06 51.1 11.1 16 189-204 46-61 (234)
232 PRK08903 DnaA regulatory inact 94.9 0.14 3.1E-06 52.1 9.7 17 188-204 42-58 (227)
233 cd01120 RecA-like_NTPases RecA 94.8 0.24 5.2E-06 46.9 10.4 35 191-225 2-39 (165)
234 PRK06731 flhF flagellar biosyn 94.8 1.5 3.3E-05 45.8 16.8 130 187-354 74-210 (270)
235 cd01126 TraG_VirD4 The TraG/Tr 94.7 0.029 6.3E-07 62.2 4.2 59 190-248 1-60 (384)
236 PTZ00112 origin recognition co 94.7 0.48 1E-05 56.3 13.8 16 285-300 868-883 (1164)
237 PRK12422 chromosomal replicati 94.7 0.3 6.5E-06 54.9 12.2 17 285-301 201-217 (445)
238 COG1484 DnaC DNA replication p 94.6 0.12 2.6E-06 53.6 8.2 48 187-234 104-153 (254)
239 PRK07952 DNA replication prote 94.6 0.59 1.3E-05 48.0 13.2 17 189-205 100-116 (244)
240 PF14617 CMS1: U3-containing 9 94.6 0.054 1.2E-06 55.5 5.4 83 213-297 126-212 (252)
241 PRK12727 flagellar biosynthesi 94.5 0.9 1.9E-05 51.5 15.2 56 285-353 427-482 (559)
242 cd01122 GP4d_helicase GP4d_hel 94.4 0.36 7.8E-06 50.6 11.6 115 185-300 27-154 (271)
243 PHA02533 17 large terminase pr 94.4 0.16 3.5E-06 58.3 9.4 63 173-235 59-126 (534)
244 TIGR00362 DnaA chromosomal rep 94.3 0.28 6E-06 54.8 10.9 16 190-205 138-153 (405)
245 PRK10917 ATP-dependent DNA hel 94.3 0.1 2.2E-06 62.2 7.8 75 511-585 309-388 (681)
246 PF02534 T4SS-DNA_transf: Type 94.3 0.042 9.2E-07 62.7 4.4 60 189-248 45-105 (469)
247 PRK05580 primosome assembly pr 94.2 0.11 2.5E-06 61.7 7.9 76 512-588 190-266 (679)
248 PRK08116 hypothetical protein; 94.1 0.88 1.9E-05 47.6 13.5 41 190-230 116-158 (268)
249 KOG0701 dsRNA-specific nucleas 94.1 0.037 8E-07 69.4 3.5 94 514-607 294-399 (1606)
250 PRK12726 flagellar biosynthesi 94.0 1.5 3.2E-05 47.8 15.0 129 188-353 206-340 (407)
251 PRK07003 DNA polymerase III su 94.0 0.52 1.1E-05 55.4 12.2 19 191-209 41-59 (830)
252 TIGR00595 priA primosomal prot 94.0 0.13 2.8E-06 58.9 7.5 76 512-588 25-101 (505)
253 COG2256 MGS1 ATPase related to 94.0 0.17 3.7E-06 54.4 7.7 34 189-222 49-82 (436)
254 PRK14721 flhF flagellar biosyn 93.9 1.4 3.1E-05 48.9 15.2 128 187-354 190-325 (420)
255 COG1110 Reverse gyrase [DNA re 93.9 0.12 2.6E-06 61.3 7.0 63 511-573 124-192 (1187)
256 PRK14956 DNA polymerase III su 93.9 0.62 1.3E-05 52.3 12.3 19 191-209 43-61 (484)
257 TIGR03877 thermo_KaiC_1 KaiC d 93.9 0.87 1.9E-05 46.7 12.8 107 188-299 21-139 (237)
258 PRK00411 cdc6 cell division co 93.9 0.78 1.7E-05 51.0 13.4 17 189-205 56-72 (394)
259 TIGR02881 spore_V_K stage V sp 93.9 0.62 1.3E-05 48.6 11.8 20 189-208 43-62 (261)
260 PRK14960 DNA polymerase III su 93.8 0.49 1.1E-05 54.9 11.5 20 190-209 39-58 (702)
261 smart00165 UBA Ubiquitin assoc 93.8 0.12 2.6E-06 36.0 4.2 36 9-44 2-37 (37)
262 PRK00149 dnaA chromosomal repl 93.7 0.42 9.2E-06 54.1 11.0 18 189-206 149-166 (450)
263 PRK13833 conjugal transfer pro 93.7 0.32 6.9E-06 52.1 9.3 54 173-226 128-187 (323)
264 PRK05973 replicative DNA helic 93.7 1.4 3E-05 45.0 13.6 55 184-239 60-117 (237)
265 TIGR03420 DnaA_homol_Hda DnaA 93.6 0.33 7.1E-06 49.3 9.1 19 188-206 38-56 (226)
266 PRK13897 type IV secretion sys 93.6 0.068 1.5E-06 62.0 4.4 58 189-246 159-217 (606)
267 COG3421 Uncharacterized protei 93.6 0.15 3.2E-06 57.1 6.7 99 193-299 2-125 (812)
268 cd00984 DnaB_C DnaB helicase C 93.6 0.95 2.1E-05 46.5 12.5 107 187-299 12-136 (242)
269 PF08423 Rad51: Rad51; InterP 93.6 0.43 9.4E-06 49.5 9.9 106 180-298 25-145 (256)
270 KOG0739 AAA+-type ATPase [Post 93.5 1.3 2.8E-05 45.8 12.6 126 183-351 156-288 (439)
271 PRK14088 dnaA chromosomal repl 93.5 0.76 1.6E-05 51.8 12.5 18 189-206 131-148 (440)
272 TIGR03015 pepcterm_ATPase puta 93.5 0.79 1.7E-05 47.8 12.0 35 174-208 24-63 (269)
273 PF13173 AAA_14: AAA domain 93.5 0.26 5.5E-06 45.3 7.3 17 188-204 2-18 (128)
274 TIGR02928 orc1/cdc6 family rep 93.5 0.22 4.8E-06 54.7 8.2 17 189-205 41-57 (365)
275 KOG0989 Replication factor C, 93.4 0.16 3.5E-06 52.6 6.2 34 177-210 40-79 (346)
276 PRK05707 DNA polymerase III su 93.4 0.7 1.5E-05 49.8 11.5 34 173-206 3-40 (328)
277 PRK14087 dnaA chromosomal repl 93.4 0.7 1.5E-05 52.2 11.9 15 285-299 205-219 (450)
278 PLN03025 replication factor C 93.3 0.79 1.7E-05 49.4 11.9 19 189-207 35-53 (319)
279 PRK14949 DNA polymerase III su 93.3 0.43 9.3E-06 57.2 10.3 19 191-209 41-59 (944)
280 cd00194 UBA Ubiquitin Associat 93.3 0.19 4.2E-06 35.1 4.7 36 9-44 2-37 (38)
281 PRK04195 replication factor C 93.2 0.49 1.1E-05 54.1 10.6 21 188-208 39-59 (482)
282 TIGR03878 thermo_KaiC_2 KaiC d 93.2 1.7 3.8E-05 45.2 13.8 95 187-297 35-142 (259)
283 PRK14712 conjugal transfer nic 93.2 0.54 1.2E-05 60.1 11.5 63 173-239 835-906 (1623)
284 PRK09112 DNA polymerase III su 93.1 1.3 2.8E-05 48.2 13.1 16 284-299 139-154 (351)
285 PRK14964 DNA polymerase III su 93.1 0.94 2E-05 51.4 12.3 21 189-209 36-56 (491)
286 COG1474 CDC6 Cdc6-related prot 93.0 1.7 3.6E-05 47.7 13.8 17 189-205 43-59 (366)
287 COG1444 Predicted P-loop ATPas 93.0 1.3 2.8E-05 52.2 13.5 163 173-373 214-394 (758)
288 PRK10416 signal recognition pa 93.0 5.8 0.00013 42.6 17.7 137 188-352 114-256 (318)
289 PRK13342 recombination factor 92.9 0.53 1.1E-05 52.7 10.1 20 190-209 38-57 (413)
290 PF05876 Terminase_GpA: Phage 92.9 0.23 5.1E-06 57.5 7.4 157 173-352 16-191 (557)
291 PF05127 Helicase_RecD: Helica 92.9 0.15 3.2E-06 49.4 4.8 115 192-341 1-124 (177)
292 TIGR00643 recG ATP-dependent D 92.9 0.23 4.9E-06 58.8 7.4 75 511-585 283-362 (630)
293 PRK00771 signal recognition pa 92.8 4.5 9.8E-05 45.3 17.1 124 189-349 96-226 (437)
294 PRK13850 type IV secretion sys 92.8 0.12 2.6E-06 60.7 4.9 58 188-245 139-197 (670)
295 PRK11823 DNA repair protein Ra 92.8 1.2 2.7E-05 50.2 12.8 87 188-299 80-169 (446)
296 PRK07764 DNA polymerase III su 92.7 0.95 2.1E-05 54.7 12.3 19 191-209 40-58 (824)
297 PRK08769 DNA polymerase III su 92.7 1.2 2.6E-05 47.7 11.8 36 171-206 2-44 (319)
298 PRK12724 flagellar biosynthesi 92.6 4.6 0.0001 44.7 16.3 62 284-354 297-358 (432)
299 PRK12323 DNA polymerase III su 92.6 0.82 1.8E-05 53.0 11.0 20 190-209 40-59 (700)
300 TIGR00064 ftsY signal recognit 92.6 6.8 0.00015 41.0 17.2 135 189-352 73-214 (272)
301 cd01121 Sms Sms (bacterial rad 92.6 1.2 2.6E-05 48.8 12.0 87 188-299 82-171 (372)
302 PRK14873 primosome assembly pr 92.6 0.38 8.1E-06 56.8 8.5 90 496-586 171-263 (665)
303 PRK04328 hypothetical protein; 92.6 0.65 1.4E-05 48.1 9.5 106 188-298 23-140 (249)
304 PRK06067 flagellar accessory p 92.5 2.5 5.4E-05 43.2 13.7 99 188-299 25-133 (234)
305 PRK08691 DNA polymerase III su 92.5 1.1 2.4E-05 52.5 11.9 20 190-209 40-59 (709)
306 PRK13894 conjugal transfer ATP 92.3 0.66 1.4E-05 49.8 9.3 53 173-225 132-190 (319)
307 PRK14961 DNA polymerase III su 92.3 1.1 2.3E-05 49.3 11.2 19 191-209 41-59 (363)
308 PRK13826 Dtr system oriT relax 92.2 0.82 1.8E-05 56.5 11.0 65 173-241 381-450 (1102)
309 PRK07940 DNA polymerase III su 92.2 2.3 5E-05 47.0 13.6 18 190-207 38-55 (394)
310 PRK10867 signal recognition pa 92.1 1.3 2.8E-05 49.4 11.7 104 190-294 102-223 (433)
311 cd00983 recA RecA is a bacter 92.1 0.7 1.5E-05 49.4 9.1 89 188-299 55-146 (325)
312 PRK11331 5-methylcytosine-spec 92.0 0.43 9.2E-06 53.0 7.6 35 174-208 180-214 (459)
313 PRK06645 DNA polymerase III su 92.0 1.1 2.3E-05 51.3 10.9 20 190-209 45-64 (507)
314 TIGR02760 TraI_TIGR conjugativ 91.9 0.57 1.2E-05 62.0 9.9 64 172-239 1018-1090(1960)
315 PRK07994 DNA polymerase III su 91.9 1.2 2.7E-05 52.1 11.6 19 191-209 41-59 (647)
316 TIGR02237 recomb_radB DNA repa 91.9 1.4 3.1E-05 44.0 10.8 92 188-298 12-109 (209)
317 PRK14962 DNA polymerase III su 91.9 1.3 2.8E-05 50.3 11.4 19 191-209 39-57 (472)
318 CHL00181 cbbX CbbX; Provisiona 91.8 2.9 6.3E-05 44.2 13.4 21 188-208 59-79 (287)
319 PRK14952 DNA polymerase III su 91.8 1.6 3.5E-05 50.7 12.3 19 191-209 38-56 (584)
320 PRK09361 radB DNA repair and r 91.8 1.6 3.5E-05 44.2 11.2 41 181-221 11-59 (225)
321 PRK13822 conjugal transfer cou 91.7 0.2 4.4E-06 58.7 5.0 59 189-247 225-284 (641)
322 PRK07471 DNA polymerase III su 91.7 0.86 1.9E-05 49.9 9.5 16 190-205 43-58 (365)
323 PRK09354 recA recombinase A; P 91.7 1 2.2E-05 48.6 9.9 89 188-299 60-151 (349)
324 PRK05896 DNA polymerase III su 91.7 1.9 4.2E-05 49.9 12.6 20 190-209 40-59 (605)
325 cd03115 SRP The signal recogni 91.7 11 0.00024 36.3 16.4 30 191-220 3-35 (173)
326 PRK09111 DNA polymerase III su 91.6 2.2 4.8E-05 49.8 13.3 20 190-209 48-67 (598)
327 PRK12402 replication factor C 91.6 1.6 3.5E-05 47.2 11.7 18 190-207 38-55 (337)
328 PRK14958 DNA polymerase III su 91.6 1.7 3.7E-05 49.8 12.2 19 191-209 41-59 (509)
329 KOG0741 AAA+-type ATPase [Post 91.6 1.3 2.8E-05 49.4 10.4 33 189-221 539-572 (744)
330 PF03354 Terminase_1: Phage Te 91.4 0.28 6E-06 56.0 5.5 61 176-236 1-77 (477)
331 COG0593 DnaA ATPase involved i 91.3 1.6 3.5E-05 48.0 11.0 68 189-301 114-190 (408)
332 PRK08533 flagellar accessory p 91.3 1.8 4E-05 44.1 11.0 51 187-238 23-76 (230)
333 TIGR02880 cbbX_cfxQ probable R 91.3 2.6 5.7E-05 44.5 12.5 19 188-206 58-76 (284)
334 PF03796 DnaB_C: DnaB-like hel 91.3 2.7 5.8E-05 43.7 12.5 139 189-339 20-179 (259)
335 COG0513 SrmB Superfamily II DN 91.3 0.62 1.3E-05 53.6 8.3 68 515-586 102-180 (513)
336 PRK14086 dnaA chromosomal repl 91.3 1.5 3.2E-05 50.9 11.1 16 285-300 376-391 (617)
337 TIGR00580 mfd transcription-re 91.2 0.47 1E-05 58.2 7.5 76 511-586 499-579 (926)
338 PF13177 DNA_pol3_delta2: DNA 91.2 1.7 3.8E-05 41.6 10.0 51 285-350 101-151 (162)
339 PHA03368 DNA packaging termina 91.2 4.4 9.5E-05 47.1 14.5 164 157-352 227-402 (738)
340 TIGR03880 KaiC_arch_3 KaiC dom 91.2 5.7 0.00012 40.2 14.5 97 188-298 16-119 (224)
341 TIGR02767 TraG-Ti Ti-type conj 91.1 0.27 5.9E-06 57.3 5.2 58 189-246 212-271 (623)
342 TIGR02655 circ_KaiC circadian 91.0 0.9 1.9E-05 52.0 9.2 106 180-298 250-365 (484)
343 TIGR02782 TrbB_P P-type conjug 90.9 1.5 3.2E-05 46.7 10.1 53 173-225 116-174 (299)
344 PRK13709 conjugal transfer nic 90.9 1.6 3.5E-05 56.7 12.0 63 173-239 967-1038(1747)
345 PRK14723 flhF flagellar biosyn 90.8 3.8 8.2E-05 48.8 14.1 126 188-353 185-318 (767)
346 PLN03187 meiotic recombination 90.8 1.1 2.4E-05 48.5 9.1 102 181-298 114-233 (344)
347 TIGR03600 phage_DnaB phage rep 90.8 3.8 8.3E-05 46.0 13.9 144 188-339 194-353 (421)
348 PRK11034 clpA ATP-dependent Cl 90.7 1.4 3E-05 52.9 10.7 19 188-206 207-225 (758)
349 COG1222 RPT1 ATP-dependent 26S 90.7 3 6.5E-05 44.5 11.7 92 188-319 185-282 (406)
350 PRK13876 conjugal transfer cou 90.6 0.27 5.9E-06 57.8 4.6 56 188-244 144-200 (663)
351 TIGR02012 tigrfam_recA protein 90.6 1.1 2.5E-05 47.8 8.9 89 188-299 55-146 (321)
352 PRK14955 DNA polymerase III su 90.6 2.2 4.7E-05 47.5 11.6 20 190-209 40-59 (397)
353 TIGR00767 rho transcription te 90.6 1.3 2.8E-05 48.6 9.3 21 187-207 167-187 (415)
354 PRK14959 DNA polymerase III su 90.6 2.8 6.1E-05 48.8 12.6 20 190-209 40-59 (624)
355 PF01695 IstB_IS21: IstB-like 90.5 0.43 9.4E-06 46.6 5.2 43 187-229 46-90 (178)
356 PRK06871 DNA polymerase III su 90.5 2.2 4.8E-05 45.8 11.0 33 174-206 3-42 (325)
357 TIGR01425 SRP54_euk signal rec 90.4 10 0.00022 42.2 16.4 55 190-244 102-162 (429)
358 PRK14951 DNA polymerase III su 90.4 1.7 3.6E-05 50.9 10.6 19 191-209 41-59 (618)
359 TIGR02639 ClpA ATP-dependent C 90.3 2.7 5.8E-05 50.8 12.8 18 188-205 203-220 (731)
360 COG1219 ClpX ATP-dependent pro 90.3 0.18 3.9E-06 52.4 2.4 24 187-210 96-119 (408)
361 PRK06964 DNA polymerase III su 90.3 2.2 4.9E-05 46.1 10.9 33 174-206 2-39 (342)
362 TIGR00959 ffh signal recogniti 90.2 2.2 4.7E-05 47.7 11.0 83 190-272 101-195 (428)
363 cd01394 radB RadB. The archaea 90.1 1.8 3.9E-05 43.7 9.6 40 181-220 7-54 (218)
364 PHA02544 44 clamp loader, smal 90.0 2.8 6.1E-05 44.9 11.6 15 285-299 99-113 (316)
365 TIGR03881 KaiC_arch_4 KaiC dom 89.9 4.4 9.6E-05 41.1 12.4 51 187-238 19-72 (229)
366 TIGR02688 conserved hypothetic 89.7 2.3 5E-05 46.9 10.3 53 153-206 168-227 (449)
367 PHA03333 putative ATPase subun 89.6 3.4 7.3E-05 48.1 12.0 157 175-352 171-344 (752)
368 PRK07133 DNA polymerase III su 89.6 4.3 9.3E-05 48.2 13.2 19 191-209 43-61 (725)
369 PRK06904 replicative DNA helic 89.6 5.3 0.00012 45.4 13.7 140 189-338 222-382 (472)
370 TIGR00665 DnaB replicative DNA 89.5 3.4 7.4E-05 46.6 12.2 110 188-299 195-318 (434)
371 COG4962 CpaF Flp pilus assembl 89.5 0.73 1.6E-05 48.9 6.1 59 168-226 152-213 (355)
372 PRK14957 DNA polymerase III su 89.5 4 8.6E-05 47.1 12.6 19 191-209 41-59 (546)
373 TIGR00708 cobA cob(I)alamin ad 89.4 2.5 5.4E-05 40.9 9.3 102 191-302 8-113 (173)
374 COG1198 PriA Primosomal protei 89.4 0.43 9.3E-06 56.3 4.9 77 494-570 226-304 (730)
375 PHA00729 NTP-binding motif con 89.3 4.6 9.9E-05 40.8 11.5 33 261-295 59-91 (226)
376 PRK06321 replicative DNA helic 89.3 3.6 7.8E-05 46.7 12.1 151 181-339 215-388 (472)
377 PRK08939 primosomal protein Dn 89.3 3.2 6.9E-05 44.3 11.0 18 188-205 156-173 (306)
378 PRK10689 transcription-repair 89.3 1.1 2.3E-05 56.5 8.4 75 511-585 648-727 (1147)
379 TIGR02785 addA_Gpos recombinat 89.2 1.4 3E-05 56.3 9.6 119 173-297 1-126 (1232)
380 PRK13880 conjugal transfer cou 89.2 0.34 7.5E-06 57.0 3.9 57 189-245 176-234 (636)
381 PRK06090 DNA polymerase III su 89.1 5 0.00011 43.0 12.4 34 173-206 3-43 (319)
382 PRK05563 DNA polymerase III su 89.1 2 4.4E-05 49.9 10.1 20 190-209 40-59 (559)
383 PRK10919 ATP-dependent DNA hel 89.1 0.65 1.4E-05 55.3 6.2 62 173-236 2-70 (672)
384 PRK14948 DNA polymerase III su 89.0 4.5 9.9E-05 47.6 13.0 21 189-209 39-59 (620)
385 PRK09165 replicative DNA helic 89.0 4.3 9.2E-05 46.6 12.6 108 189-300 218-355 (497)
386 COG0464 SpoVK ATPases of the A 89.0 2 4.3E-05 49.4 10.0 27 189-215 277-303 (494)
387 PRK05636 replicative DNA helic 88.9 3.2 6.9E-05 47.5 11.3 108 191-300 268-389 (505)
388 PRK13341 recombination factor 88.9 2.8 6E-05 50.2 11.2 21 189-209 53-73 (725)
389 KOG1133 Helicase of the DEAD s 88.9 11 0.00023 43.7 14.9 102 513-617 630-778 (821)
390 cd01393 recA_like RecA is a b 88.8 4.7 0.0001 40.8 11.7 95 188-298 19-126 (226)
391 KOG2028 ATPase related to the 88.7 2.4 5.2E-05 45.1 9.1 56 155-211 126-185 (554)
392 PRK06995 flhF flagellar biosyn 88.6 12 0.00026 42.4 15.5 23 332-354 368-390 (484)
393 KOG1133 Helicase of the DEAD s 88.6 0.49 1.1E-05 54.0 4.4 40 169-209 12-55 (821)
394 TIGR00678 holB DNA polymerase 88.6 3.8 8.3E-05 40.2 10.5 17 284-300 94-110 (188)
395 PRK11054 helD DNA helicase IV; 88.5 1.2 2.6E-05 52.9 7.9 78 156-235 176-263 (684)
396 cd00561 CobA_CobO_BtuR ATP:cor 88.4 7.2 0.00016 37.2 11.6 100 191-303 5-112 (159)
397 PRK08760 replicative DNA helic 88.4 3.6 7.8E-05 46.8 11.3 107 189-300 230-353 (476)
398 TIGR02760 TraI_TIGR conjugativ 88.4 4 8.7E-05 54.4 13.2 55 173-227 429-488 (1960)
399 COG1435 Tdk Thymidine kinase [ 88.3 3.1 6.7E-05 40.7 9.1 86 191-299 7-95 (201)
400 PRK05595 replicative DNA helic 88.3 3.2 6.9E-05 47.0 10.8 152 181-339 190-360 (444)
401 cd01123 Rad51_DMC1_radA Rad51_ 88.2 2.7 5.9E-05 42.8 9.5 95 188-298 19-127 (235)
402 KOG0991 Replication factor C, 88.1 0.72 1.6E-05 46.0 4.7 21 189-209 49-69 (333)
403 COG1200 RecG RecG-like helicas 88.1 1.4 3E-05 50.8 7.6 85 502-586 301-390 (677)
404 PRK14963 DNA polymerase III su 88.0 6.2 0.00013 45.3 12.9 18 191-208 39-56 (504)
405 KOG0347 RNA helicase [RNA proc 88.0 0.92 2E-05 50.5 5.8 68 515-586 266-346 (731)
406 PRK05986 cob(I)alamin adenolsy 87.9 4.7 0.0001 39.6 10.2 107 186-302 20-131 (191)
407 TIGR00635 ruvB Holliday juncti 87.9 1.3 2.9E-05 47.2 7.2 18 189-206 31-48 (305)
408 PRK14969 DNA polymerase III su 87.8 3.2 6.9E-05 47.9 10.5 19 191-209 41-59 (527)
409 TIGR03499 FlhF flagellar biosy 87.8 2.6 5.6E-05 44.5 9.1 19 188-206 194-212 (282)
410 PRK08840 replicative DNA helic 87.7 7.7 0.00017 44.0 13.4 143 188-337 217-376 (464)
411 PRK14954 DNA polymerase III su 87.7 5.1 0.00011 47.0 12.2 20 190-209 40-59 (620)
412 PRK07993 DNA polymerase III su 87.6 3.6 7.8E-05 44.5 10.2 33 174-206 3-42 (334)
413 COG2804 PulE Type II secretory 87.5 0.88 1.9E-05 50.8 5.5 36 173-208 241-279 (500)
414 PRK11773 uvrD DNA-dependent he 87.5 0.73 1.6E-05 55.5 5.4 63 172-236 8-77 (721)
415 TIGR03689 pup_AAA proteasome A 87.5 3.7 8E-05 46.9 10.6 19 188-206 216-234 (512)
416 TIGR01075 uvrD DNA helicase II 87.5 0.83 1.8E-05 55.1 5.8 63 172-236 3-72 (715)
417 CHL00176 ftsH cell division pr 87.5 1.7 3.8E-05 51.1 8.3 21 189-209 217-237 (638)
418 KOG0734 AAA+-type ATPase conta 87.4 2.9 6.3E-05 46.8 9.2 110 189-346 338-453 (752)
419 KOG2543 Origin recognition com 87.2 6.2 0.00014 42.5 11.2 139 173-345 9-163 (438)
420 COG2255 RuvB Holliday junction 87.2 1.3 2.8E-05 45.7 6.0 42 541-584 253-297 (332)
421 PRK09376 rho transcription ter 87.0 2.8 6E-05 45.9 8.7 20 186-205 167-186 (416)
422 PRK14701 reverse gyrase; Provi 86.9 1.5 3.3E-05 56.9 7.9 61 511-571 121-187 (1638)
423 PTZ00293 thymidine kinase; Pro 86.9 5 0.00011 40.1 9.9 36 188-223 4-42 (211)
424 PRK00080 ruvB Holliday junctio 86.6 2.3 5E-05 46.0 8.2 21 189-209 52-72 (328)
425 PF00437 T2SE: Type II/IV secr 86.6 1.4 3E-05 46.2 6.3 47 179-225 117-167 (270)
426 COG0470 HolB ATPase involved i 86.6 1.9 4.1E-05 46.3 7.6 22 188-209 23-45 (325)
427 PRK05748 replicative DNA helic 86.6 6.5 0.00014 44.5 12.1 118 181-300 192-328 (448)
428 PRK11634 ATP-dependent RNA hel 86.5 1.9 4.2E-05 50.8 8.0 71 511-585 73-154 (629)
429 TIGR02238 recomb_DMC1 meiotic 86.4 3 6.6E-05 44.6 8.7 95 188-298 96-203 (313)
430 cd01130 VirB11-like_ATPase Typ 86.3 1.4 3E-05 43.4 5.7 34 172-205 8-42 (186)
431 PRK13851 type IV secretion sys 86.3 1.1 2.4E-05 48.5 5.4 47 180-226 153-202 (344)
432 PRK14950 DNA polymerase III su 86.3 5.3 0.00012 46.9 11.4 20 190-209 40-59 (585)
433 PHA00350 putative assembly pro 86.3 3.2 6.8E-05 45.7 8.9 24 191-214 4-31 (399)
434 COG4185 Uncharacterized protei 86.3 2.6 5.7E-05 39.7 7.0 35 191-226 5-39 (187)
435 PRK14965 DNA polymerase III su 86.2 6.6 0.00014 45.9 12.1 19 191-209 41-59 (576)
436 PRK08506 replicative DNA helic 86.1 6.5 0.00014 44.7 11.8 119 180-300 180-316 (472)
437 PRK03992 proteasome-activating 85.8 4 8.6E-05 45.3 9.6 21 189-209 166-186 (389)
438 PRK08699 DNA polymerase III su 85.7 12 0.00025 40.5 12.8 33 175-207 3-40 (325)
439 PTZ00035 Rad51 protein; Provis 85.7 4.7 0.0001 43.7 9.9 102 181-298 106-225 (337)
440 PRK08451 DNA polymerase III su 85.7 6.9 0.00015 44.9 11.6 18 191-208 39-56 (535)
441 COG1223 Predicted ATPase (AAA+ 85.6 7.9 0.00017 39.5 10.4 18 188-205 151-168 (368)
442 TIGR01243 CDC48 AAA family ATP 85.4 4.2 9E-05 49.2 10.3 21 188-208 212-232 (733)
443 TIGR02640 gas_vesic_GvpN gas v 85.4 1.3 2.8E-05 46.3 5.2 40 180-219 13-52 (262)
444 TIGR02655 circ_KaiC circadian 85.1 3.7 8.1E-05 46.9 9.3 51 187-238 20-74 (484)
445 PRK04301 radA DNA repair and r 85.0 4.4 9.4E-05 43.6 9.3 95 188-298 102-210 (317)
446 TIGR01074 rep ATP-dependent DN 85.0 1.7 3.6E-05 52.1 6.6 60 174-235 2-68 (664)
447 PRK08006 replicative DNA helic 84.9 14 0.0003 42.1 13.5 140 189-338 225-384 (471)
448 COG2805 PilT Tfp pilus assembl 84.8 0.62 1.3E-05 48.4 2.4 95 191-299 128-234 (353)
449 PHA02542 41 41 helicase; Provi 84.8 7.7 0.00017 44.1 11.4 42 179-220 176-225 (473)
450 PRK13900 type IV secretion sys 84.8 1.1 2.4E-05 48.4 4.5 40 186-225 158-199 (332)
451 TIGR02397 dnaX_nterm DNA polym 84.6 8.8 0.00019 41.8 11.7 17 190-206 38-54 (355)
452 TIGR03346 chaperone_ClpB ATP-d 84.6 6.9 0.00015 48.2 11.7 18 189-206 195-212 (852)
453 KOG0331 ATP-dependent RNA heli 84.4 2.9 6.3E-05 47.2 7.6 90 512-605 165-272 (519)
454 PRK10865 protein disaggregatio 84.4 6.6 0.00014 48.2 11.4 18 189-206 200-217 (857)
455 CHL00095 clpC Clp protease ATP 84.4 7.9 0.00017 47.4 12.1 33 175-207 184-219 (821)
456 cd01128 rho_factor Transcripti 84.3 3.5 7.5E-05 42.6 7.7 20 186-205 14-33 (249)
457 cd00268 DEADc DEAD-box helicas 84.3 3.8 8.3E-05 40.6 7.9 71 511-585 68-148 (203)
458 KOG1513 Nuclear helicase MOP-3 84.2 2.2 4.8E-05 49.6 6.5 188 134-339 234-453 (1300)
459 PRK00440 rfc replication facto 84.2 15 0.00032 39.2 13.1 17 190-206 40-56 (319)
460 PF01637 Arch_ATPase: Archaeal 84.1 4.3 9.3E-05 40.8 8.4 17 188-204 20-36 (234)
461 PRK06647 DNA polymerase III su 84.1 8 0.00017 45.0 11.4 20 190-209 40-59 (563)
462 PRK12608 transcription termina 83.9 5.2 0.00011 43.5 9.1 28 178-205 120-150 (380)
463 PF13481 AAA_25: AAA domain; P 83.6 7.3 0.00016 38.2 9.6 114 187-309 31-164 (193)
464 PTZ00454 26S protease regulato 83.5 3.7 7.9E-05 45.6 8.0 22 188-209 179-200 (398)
465 PRK08058 DNA polymerase III su 83.4 10 0.00022 41.0 11.2 16 285-300 109-124 (329)
466 PF01443 Viral_helicase1: Vira 83.2 0.55 1.2E-05 47.9 1.3 15 191-205 1-15 (234)
467 PRK09302 circadian clock prote 82.9 11 0.00023 43.6 11.9 99 188-299 273-376 (509)
468 COG0630 VirB11 Type IV secreto 82.8 1.6 3.4E-05 46.8 4.6 55 171-225 125-182 (312)
469 PRK10263 DNA translocase FtsK; 82.7 7.8 0.00017 48.5 10.8 18 189-206 1011-1028(1355)
470 PRK07004 replicative DNA helic 82.6 8.9 0.00019 43.5 10.8 140 188-338 213-372 (460)
471 TIGR00614 recQ_fam ATP-depende 82.6 3.7 7.9E-05 46.9 7.9 74 512-585 51-132 (470)
472 TIGR01241 FtsH_fam ATP-depende 82.6 2.8 6E-05 48.2 6.9 21 189-209 89-109 (495)
473 PRK11776 ATP-dependent RNA hel 82.6 3.5 7.7E-05 46.8 7.7 70 513-586 73-153 (460)
474 KOG0745 Putative ATP-dependent 82.4 1.1 2.4E-05 48.6 3.2 24 188-211 226-249 (564)
475 PRK14971 DNA polymerase III su 82.3 12 0.00025 44.2 11.9 19 191-209 42-60 (614)
476 TIGR00416 sms DNA repair prote 82.3 16 0.00034 41.4 12.5 50 188-238 94-146 (454)
477 TIGR01054 rgy reverse gyrase. 82.2 3.2 7E-05 52.4 7.7 60 512-571 121-187 (1171)
478 TIGR00602 rad24 checkpoint pro 82.1 6.7 0.00015 46.1 9.7 20 190-209 112-131 (637)
479 TIGR00601 rad23 UV excision re 82.0 1.7 3.7E-05 47.5 4.6 39 9-47 157-195 (378)
480 KOG0733 Nuclear AAA ATPase (VC 82.0 6.1 0.00013 45.1 8.8 35 171-208 209-243 (802)
481 TIGR03345 VI_ClpV1 type VI sec 82.0 9.6 0.00021 46.7 11.4 29 178-206 192-226 (852)
482 PTZ00361 26 proteosome regulat 81.8 5.5 0.00012 44.7 8.6 23 188-210 217-239 (438)
483 PF00154 RecA: recA bacterial 81.8 7.1 0.00015 41.8 9.0 88 188-298 53-143 (322)
484 KOG0744 AAA+-type ATPase [Post 81.7 1.9 4E-05 45.3 4.4 35 284-318 248-288 (423)
485 PRK09519 recA DNA recombinatio 81.6 7 0.00015 46.8 9.7 89 188-299 60-151 (790)
486 cd01125 repA Hexameric Replica 81.5 28 0.0006 35.6 13.2 30 191-220 4-48 (239)
487 KOG0729 26S proteasome regulat 81.4 22 0.00047 36.4 11.6 21 189-209 212-232 (435)
488 TIGR01547 phage_term_2 phage t 81.4 5 0.00011 44.6 8.2 99 191-299 4-114 (396)
489 PRK14970 DNA polymerase III su 81.3 8.2 0.00018 42.4 9.8 17 190-206 41-57 (367)
490 PRK06305 DNA polymerase III su 81.1 12 0.00027 42.3 11.2 20 190-209 41-60 (451)
491 TIGR03819 heli_sec_ATPase heli 80.9 3 6.4E-05 45.3 5.9 52 174-225 163-217 (340)
492 PRK14953 DNA polymerase III su 80.9 22 0.00047 40.7 13.2 19 191-209 41-59 (486)
493 PRK07399 DNA polymerase III su 80.8 15 0.00033 39.3 11.3 17 189-205 27-43 (314)
494 COG1618 Predicted nucleotide k 80.7 6.4 0.00014 37.3 7.1 112 190-312 7-126 (179)
495 COG3973 Superfamily I DNA and 80.7 3.4 7.4E-05 46.9 6.3 55 188-242 226-289 (747)
496 KOG1806 DEAD box containing he 80.7 2.4 5.2E-05 50.7 5.3 69 170-238 735-808 (1320)
497 TIGR01073 pcrA ATP-dependent D 80.2 2.9 6.3E-05 50.5 6.2 63 172-236 3-72 (726)
498 PRK09183 transposase/IS protei 80.1 2.5 5.3E-05 44.0 4.9 43 185-228 99-144 (259)
499 TIGR03743 SXT_TraD conjugative 80.1 4.4 9.5E-05 47.8 7.4 61 188-248 176-243 (634)
500 CHL00195 ycf46 Ycf46; Provisio 80.0 10 0.00022 43.3 10.0 19 189-207 260-278 (489)
No 1
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.4e-88 Score=783.19 Aligned_cols=488 Identities=33% Similarity=0.489 Sum_probs=409.7
Q ss_pred CCCcccCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHH
Q 004098 147 CPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLM 226 (774)
Q Consensus 147 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~ 226 (774)
.+.+....++|...+...++++||+..|||+|.++|++++.|+|+|++||||+|||+||+||++...+.+|||+||++||
T Consensus 434 ~~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLm 513 (1195)
T PLN03137 434 DKKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLI 513 (1195)
T ss_pred CccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHH
Confidence 34455578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEcCCCChHHHHHHH---Hc--CCceEEEEChHHHHH---HHHHHHHHHHhcCccEEEEeccccc
Q 004098 227 HDQCSKLSKHGVTACFLGSGQPDNKVEQKA---LR--GMYSIIYVCPETVIR---LIKPLQRLAESRGIALFAIDEVHCV 298 (774)
Q Consensus 227 ~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~---~~--~~~~Ilv~TPe~l~~---ll~~~~~~~~~~~i~~iVIDEaH~l 298 (774)
+||+..+...|++++.++++.........+ .. +.++|||+|||+|.. ++..+..+.....+.+||||||||+
T Consensus 514 qDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcV 593 (1195)
T PLN03137 514 QDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCV 593 (1195)
T ss_pred HHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhh
Confidence 999999999999999999988765433222 22 678999999999863 3333333334456899999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecC
Q 004098 299 SKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378 (774)
Q Consensus 299 ~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~ 378 (774)
++|||+||++|+.|..++..|+ .+|+++||||+++.+.+++...|++. .+.++..+++|||+.|.|....
T Consensus 594 SqWGhDFRpdYr~L~~Lr~~fp---------~vPilALTATAT~~V~eDI~~~L~l~-~~~vfr~Sf~RpNL~y~Vv~k~ 663 (1195)
T PLN03137 594 SQWGHDFRPDYQGLGILKQKFP---------NIPVLALTATATASVKEDVVQALGLV-NCVVFRQSFNRPNLWYSVVPKT 663 (1195)
T ss_pred hhcccchHHHHHHHHHHHHhCC---------CCCeEEEEecCCHHHHHHHHHHcCCC-CcEEeecccCccceEEEEeccc
Confidence 9999999999999999998887 78999999999999999999999987 5778889999999999887532
Q ss_pred CccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhh
Q 004098 379 TSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVE 458 (774)
Q Consensus 379 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (774)
.. .+..+..
T Consensus 664 kk-------~le~L~~---------------------------------------------------------------- 672 (1195)
T PLN03137 664 KK-------CLEDIDK---------------------------------------------------------------- 672 (1195)
T ss_pred hh-------HHHHHHH----------------------------------------------------------------
Confidence 10 0111111
Q ss_pred hhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCc
Q 004098 459 FLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVK 538 (774)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~ 538 (774)
| +.......++||||.|++.|+.++..|...|++
T Consensus 673 ~----------------------------------------------I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gik 706 (1195)
T PLN03137 673 F----------------------------------------------IKENHFDECGIIYCLSRMDCEKVAERLQEFGHK 706 (1195)
T ss_pred H----------------------------------------------HHhcccCCCceeEeCchhHHHHHHHHHHHCCCC
Confidence 1 111113457999999999999999999999999
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeC
Q 004098 539 AAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL 618 (774)
Q Consensus 539 ~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~ 618 (774)
+..|||+|++++|..++++|.+|+++|||||++||||||+|+|++||||++|.|++.|+||+|||||+|.+|.|++||+.
T Consensus 707 a~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~ 786 (1195)
T PLN03137 707 AAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSY 786 (1195)
T ss_pred eeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCc---cCCCCCC---------------HHHHHHHHHHHHHHHHhccccchhHHHHHHHHcCCCCCCcCCCC-CCCCC
Q 004098 619 SSMPT---LLPSRRS---------------EDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQL-CDVCV 679 (774)
Q Consensus 619 ~~~~~---~~~~~~~---------------~~~~~~~~~~l~~~~~y~~~~~~Crr~~l~~~f~~~~~~~~c~~-Cd~C~ 679 (774)
.|... ++..... ....+..++.|..|++||.++..|||++||.||||.+....|+. ||||.
T Consensus 787 ~D~~~~~~lI~~~~~~~s~~~~~~~r~~~s~~~~e~~~~~L~~m~~yce~~~~CRR~~lL~yFGE~~~~~~C~~~CDnC~ 866 (1195)
T PLN03137 787 SDYIRVKHMISQGGVEQSPMAMGYNRMASSGRILETNTENLLRMVSYCENEVDCRRFLQLVHFGEKFDSTNCKKTCDNCS 866 (1195)
T ss_pred HHHHHHHHHHhccccccchhhhhhcccchhHHHHHHHHHHHHHHHHHHhChHhhHHHHHHHHcccccCccCCCCCCCCCC
Confidence 76532 2211100 11123356778889999976679999999999999986668985 99999
Q ss_pred CCCCc-ccchHHHHHHHHHHHHHHhccCCccc-ceeeeccCcccccccCCCCccchhhhhhhhhhccccCCHHHHHHHHH
Q 004098 680 DGPPE-MKNLKEEANILMQVIAAYNEQSNSMD-DDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLAR 757 (774)
Q Consensus 680 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (774)
+.+.. ..|+|++|+++++||.+++++++... +|+++|+.+++.+..+++.|++| | .+++.+..+|+.+++
T Consensus 867 ~~~~~~~~D~T~~Aq~~ls~V~~~~~~fg~~~iidvlrGs~~~~i~~~~~d~l~~~-G-------~gk~~s~~~~~~li~ 938 (1195)
T PLN03137 867 SSKSLIDKDVTEIARQLVELVKLTGERFSSAHILEVYRGSLNQYVKKHRHETLSLH-G-------AGKHLSKGEASRILH 938 (1195)
T ss_pred CCCcccccccHHHHHHHHHHHHHhccCcchhheehhhhccccHHHHHhCccccccc-C-------ccccCCHHHHHHHHH
Confidence 84332 36999999999999999766665533 89999987776555566788888 2 335788999999999
Q ss_pred HHHHcCCceecC
Q 004098 758 IMENKGYIREGD 769 (774)
Q Consensus 758 ~~~~~~~~~~~~ 769 (774)
+|+.+|||.+..
T Consensus 939 ~Li~~g~L~~~~ 950 (1195)
T PLN03137 939 YLVTEDILAEDV 950 (1195)
T ss_pred HHHHcCCceeec
Confidence 999999999865
No 2
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.3e-89 Score=752.11 Aligned_cols=471 Identities=38% Similarity=0.584 Sum_probs=407.8
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcCCc
Q 004098 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVT 239 (774)
Q Consensus 160 ~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~ 239 (774)
.+..+|+++|||..||+.|.++|..+++|+|+|++||||+|||+|||+|+++..|.+|||+|+++||+||++.++..|+.
T Consensus 4 ~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi~ 83 (590)
T COG0514 4 EAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGIR 83 (590)
T ss_pred HHHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCce
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCChH---HHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHH
Q 004098 240 ACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLR 316 (774)
Q Consensus 240 ~~~l~~~~~~~---~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~ 316 (774)
++.+++..+.. .....+..+..+++|.+||+|..- .+.+.+....+.++|||||||+++|||||||+|++|+.++
T Consensus 84 A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~--~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~ 161 (590)
T COG0514 84 AAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSP--RFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLR 161 (590)
T ss_pred eehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcCh--HHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHH
Confidence 99999997764 345566778899999999998742 2244445778999999999999999999999999999999
Q ss_pred HHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHH
Q 004098 317 ENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIY 396 (774)
Q Consensus 317 ~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~ 396 (774)
..|+ ++|+++||||+++.++.||...|++. .+.++..+|+|||++|.|...... ..++.
T Consensus 162 ~~~~---------~~p~~AlTATA~~~v~~DI~~~L~l~-~~~~~~~sfdRpNi~~~v~~~~~~--------~~q~~--- 220 (590)
T COG0514 162 AGLP---------NPPVLALTATATPRVRDDIREQLGLQ-DANIFRGSFDRPNLALKVVEKGEP--------SDQLA--- 220 (590)
T ss_pred hhCC---------CCCEEEEeCCCChHHHHHHHHHhcCC-CcceEEecCCCchhhhhhhhcccH--------HHHHH---
Confidence 9998 89999999999999999999999998 568899999999999998764311 00000
Q ss_pred HhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCccccccccccc
Q 004098 397 TKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFY 476 (774)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 476 (774)
|+.+
T Consensus 221 --------------------------------------------------------------fi~~-------------- 224 (590)
T COG0514 221 --------------------------------------------------------------FLAT-------------- 224 (590)
T ss_pred --------------------------------------------------------------HHHh--------------
Confidence 1110
Q ss_pred CCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHH
Q 004098 477 GHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHT 556 (774)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~ 556 (774)
......+++||||.||+.++.++++|...|+.+..|||||+.++|+.+++
T Consensus 225 ------------------------------~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~ 274 (590)
T COG0514 225 ------------------------------VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQ 274 (590)
T ss_pred ------------------------------hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHH
Confidence 00114568999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCCC---ccCCCC-CCHH
Q 004098 557 EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP---TLLPSR-RSED 632 (774)
Q Consensus 557 ~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~---~~~~~~-~~~~ 632 (774)
+|..++++|+|||.|||||||+||||+|||||+|.|+++|||++|||||||.++.|++||++.|.. .++... ...+
T Consensus 275 ~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~~~~ 354 (590)
T COG0514 275 AFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKPDEE 354 (590)
T ss_pred HHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhhcchHH
Confidence 999999999999999999999999999999999999999999999999999999999999999865 333332 2334
Q ss_pred HHHHHHHHHHHHHHhccccchhHHHHHHHHcCCCCCCcCCCCCCCCCCCCCcccchHHHHHHHHHHHHHHhccCCccc-c
Q 004098 633 QTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSMD-D 711 (774)
Q Consensus 633 ~~~~~~~~l~~~~~y~~~~~~Crr~~l~~~f~~~~~~~~c~~Cd~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 711 (774)
..+.....+..+..|| ++..|||..+++||||+ ....|+.||+|.. ++..+|.+++|+++++++.+...+++... +
T Consensus 355 ~~~~~~~kl~~~~~~~-e~~~crr~~ll~yfge~-~~~~c~~c~~c~~-~~~~~d~t~~a~~~ls~~~r~~~~~~~~~~~ 431 (590)
T COG0514 355 QKQIELAKLRQMIAYC-ETQTCRRLVLLKYFGED-EPEPCGNCDNCLD-TPKQFDGTIEAQKVLSCIYRMGQRFGVGYVI 431 (590)
T ss_pred HHHHHHHHHHHHHHhc-ccccchHHHHHHhcCcc-ccccccCCCcccC-cchhcchHHHHHHHHHhHhhhhhhhhHHHHH
Confidence 4445567788888888 55669999999999998 5689999999998 56799999999999999999866655433 8
Q ss_pred eeeeccCcccccccCCCCccchhhhhhhhhhccccCCHHHHHHHHHHHHHcCCceecCC
Q 004098 712 DDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDD 770 (774)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (774)
+++.|+..++....++..+++| |..+..+..+|..+.++|+..|||.+..+
T Consensus 432 ~~l~g~~~~~~~~~~~~~l~~~--------G~~k~~~~~~~~~~~~~l~~~~~~~~~~~ 482 (590)
T COG0514 432 DVLRGSKNLKIRLLGHEKLSTY--------GIGKDLSKKTWGSLIRQLIALGLLRQSLG 482 (590)
T ss_pred HHHhcccchhhhhccccccccc--------CCCcccCccchhhhHHHHHhcCceeecCC
Confidence 9999977777777777888888 22357788999999999999999998865
No 3
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.7e-79 Score=706.59 Aligned_cols=475 Identities=34% Similarity=0.559 Sum_probs=401.6
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHH
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKL 233 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l 233 (774)
..+.+....+.|++.|||..|||+|.++|+.+++|+|++++||||+|||+||++|++...+.+|||+|+++|+.||++.+
T Consensus 6 ~~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l 85 (607)
T PRK11057 6 VLNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQL 85 (607)
T ss_pred cCCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHH
Confidence 34556677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEcCCCChHHH---HHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHH
Q 004098 234 SKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYR 310 (774)
Q Consensus 234 ~~~gi~~~~l~~~~~~~~~---~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~ 310 (774)
..+|+.+..++++...... ...+..+..+++|+|||++... .+...+...++++||||||||+++|||+|++.|+
T Consensus 86 ~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~--~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~ 163 (607)
T PRK11057 86 LANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMD--NFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYA 163 (607)
T ss_pred HHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcCh--HHHHHHhhCCCCEEEEeCccccccccCcccHHHH
Confidence 9999999999888765432 2334567789999999998731 1122334567999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHH
Q 004098 311 RLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFC 390 (774)
Q Consensus 311 ~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~ 390 (774)
.|..++..++ +.|+++||||++..+..++...|++. .+.++..++.++|+.|.+..... .+.
T Consensus 164 ~L~~l~~~~p---------~~~~v~lTAT~~~~~~~di~~~l~l~-~~~~~~~~~~r~nl~~~v~~~~~--------~~~ 225 (607)
T PRK11057 164 ALGQLRQRFP---------TLPFMALTATADDTTRQDIVRLLGLN-DPLIQISSFDRPNIRYTLVEKFK--------PLD 225 (607)
T ss_pred HHHHHHHhCC---------CCcEEEEecCCChhHHHHHHHHhCCC-CeEEEECCCCCCcceeeeeeccc--------hHH
Confidence 9999998887 79999999999999999999999987 56777889999999887754221 011
Q ss_pred HHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCccccc
Q 004098 391 QLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDV 470 (774)
Q Consensus 391 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 470 (774)
.+.. ++.
T Consensus 226 ~l~~----------------------------------------------------------------~l~--------- 232 (607)
T PRK11057 226 QLMR----------------------------------------------------------------YVQ--------- 232 (607)
T ss_pred HHHH----------------------------------------------------------------HHH---------
Confidence 1111 111
Q ss_pred ccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHH
Q 004098 471 ACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQ 550 (774)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~ 550 (774)
. ..+.++||||+|++.|+.++..|...|+.+..|||+|++++
T Consensus 233 -------------------------------------~-~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~ 274 (607)
T PRK11057 233 -------------------------------------E-QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDV 274 (607)
T ss_pred -------------------------------------h-cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHH
Confidence 0 14568999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCCCc---cCCC
Q 004098 551 LRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPS 627 (774)
Q Consensus 551 R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~~---~~~~ 627 (774)
|.++++.|+.|+++|||||++++||||+|+|++|||||+|.|+++|+||+|||||+|.+|.|++||++.|... ++..
T Consensus 275 R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~ 354 (607)
T PRK11057 275 RADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (607)
T ss_pred HHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887543 3333
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccchhHHHHHHHHcCCCCCCcCCCCCCCCCCCCCcccchHHHHHHHHHHHHHHhccCC
Q 004098 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSN 707 (774)
Q Consensus 628 ~~~~~~~~~~~~~l~~~~~y~~~~~~Crr~~l~~~f~~~~~~~~c~~Cd~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (774)
.....+.......+..|..|| ++..|||++|++||||.+. ..|++||+|.+ ++...|.+++|++++++|.+.++.++
T Consensus 355 ~~~~~~~~~~~~~l~~~~~~~-~~~~Crr~~~l~yf~e~~~-~~c~~cd~c~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (607)
T PRK11057 355 KPAGQQQDIERHKLNAMGAFA-EAQTCRRLVLLNYFGEGRQ-EPCGNCDICLD-PPKQYDGLEDAQKALSCIYRVNQRFG 431 (607)
T ss_pred CCcHHHHHHHHHHHHHHHHHH-hcccCHHHHHHHHhCCCCC-CCCCCCCCCCC-cccccccHHHHHHHHHHHHHhcCCCC
Confidence 222233333345677788888 6788999999999999874 57999999998 57789999999999999999877665
Q ss_pred ccc-ceeeeccCcccccccCCCCccchhhhhhhhhhccccCCHHHHHHHHHHHHHcCCceecCC
Q 004098 708 SMD-DDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDD 770 (774)
Q Consensus 708 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (774)
... +|+++|+.+++....++.++++| |.+++.+..||+.++++|+++|||.+..+
T Consensus 432 ~~~~~~~~~g~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 487 (607)
T PRK11057 432 MGYVVEVLRGANNQRIRDYGHDKLKVY--------GIGRDKSHEHWVSVIRQLIHLGLVTQNIA 487 (607)
T ss_pred cceeeeeeeccCcchhhhcccccCCcc--------CcCCcCCHHHHHHHHHHHHHcCCceeccC
Confidence 533 89999987776666667788887 23457899999999999999999998754
No 4
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.3e-80 Score=719.51 Aligned_cols=481 Identities=41% Similarity=0.638 Sum_probs=405.5
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhc
Q 004098 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKH 236 (774)
Q Consensus 157 ~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~ 236 (774)
|..++...|+..||+..|||.|++||.+++.|+|++|.||||+||++||||||++.++.+|||+|+++||+||+..|...
T Consensus 248 ~t~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~ 327 (941)
T KOG0351|consen 248 ETKELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKK 327 (941)
T ss_pred cchHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhc
Confidence 66678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCChH---HHHHHHHcC--CceEEEEChHHHHHHHHHHHHHHHhcC---ccEEEEecccccccCCCCcHHH
Q 004098 237 GVTACFLGSGQPDN---KVEQKALRG--MYSIIYVCPETVIRLIKPLQRLAESRG---IALFAIDEVHCVSKWGHDFRPD 308 (774)
Q Consensus 237 gi~~~~l~~~~~~~---~~~~~~~~~--~~~Ilv~TPe~l~~ll~~~~~~~~~~~---i~~iVIDEaH~l~~~g~~fr~~ 308 (774)
+|+++++.+++... .+.+.+..+ .++|+|+|||++.........+..+.. +.++|||||||+++|||+|||+
T Consensus 328 ~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~ 407 (941)
T KOG0351|consen 328 GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPS 407 (941)
T ss_pred CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHH
Confidence 99999999999875 345556666 799999999999853322233444444 9999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHh
Q 004098 309 YRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKD 388 (774)
Q Consensus 309 ~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~ 388 (774)
|++|+.++..++ .+|+|+||||++..+++||+..|++. .+.++..+|+|+|++|.|........
T Consensus 408 Yk~l~~l~~~~~---------~vP~iALTATAT~~v~~DIi~~L~l~-~~~~~~~sfnR~NL~yeV~~k~~~~~------ 471 (941)
T KOG0351|consen 408 YKRLGLLRIRFP---------GVPFIALTATATERVREDVIRSLGLR-NPELFKSSFNRPNLKYEVSPKTDKDA------ 471 (941)
T ss_pred HHHHHHHHhhCC---------CCCeEEeehhccHHHHHHHHHHhCCC-CcceecccCCCCCceEEEEeccCccc------
Confidence 999999999998 79999999999999999999999998 57799999999999999998653211
Q ss_pred HHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCccc
Q 004098 389 FCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDW 468 (774)
Q Consensus 389 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 468 (774)
+
T Consensus 472 ---~---------------------------------------------------------------------------- 472 (941)
T KOG0351|consen 472 ---L---------------------------------------------------------------------------- 472 (941)
T ss_pred ---h----------------------------------------------------------------------------
Confidence 0
Q ss_pred ccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCH
Q 004098 469 DVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPK 548 (774)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~ 548 (774)
..++..++...+.+++||||.++++|+.++..|+..|+++..||+||++
T Consensus 473 -------------------------------~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~ 521 (941)
T KOG0351|consen 473 -------------------------------LDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPP 521 (941)
T ss_pred -------------------------------HHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCH
Confidence 0011112223367899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCCCcc---C
Q 004098 549 SQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL---L 625 (774)
Q Consensus 549 ~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~~~---~ 625 (774)
.+|..|+++|..++++|+|||.|||||||+||||+||||++|+|+|.|||++|||||||.++.|++||+..|...+ +
T Consensus 522 ~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll 601 (941)
T KOG0351|consen 522 KERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLL 601 (941)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887653 3
Q ss_pred CCCCCHHHHH--HHHHHHHHHHHhccccchhHHHHHHHHcCCCCCCcCCC---CCCCCCCCC---CcccchHHHHHHHHH
Q 004098 626 PSRRSEDQTK--QAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ---LCDVCVDGP---PEMKNLKEEANILMQ 697 (774)
Q Consensus 626 ~~~~~~~~~~--~~~~~l~~~~~y~~~~~~Crr~~l~~~f~~~~~~~~c~---~Cd~C~~~~---~~~~~~~~~~~~~~~ 697 (774)
.+.....+.. ....++..++.||.|.+.|||++++.||||.|....|. .||+|...+ ....|+++.|..+..
T Consensus 602 ~s~~~~~~~~~~~~~~~l~~~~~yCen~t~crr~~~l~~fge~f~~~~c~~~k~cd~C~~~~dv~~~~~d~~~~~~~~~~ 681 (941)
T KOG0351|consen 602 TSGNRLSGVKKFTRLLELVQVVTYCENETDCRRKQILEYFGEEFDSKHCKKHKTCDNCRESLDVAYELRDVTLTALDAHP 681 (941)
T ss_pred HccccccchhhccchhhHHHHHHhhcCccchhHHHHHHhcccccchhhccCCchHHHhhcccccchHHHHHHHHHHHHhh
Confidence 3321111222 35678889999999999999999999999999888998 799999864 577899999999999
Q ss_pred HHHHHhc--cCCccc-ceeeeccCcccc-cccC-CCCccchhhhhhhhhhccccCCHHHHHHHHHHHHHcCCceecCCc
Q 004098 698 VIAAYNE--QSNSMD-DDDGIYSGIKKQ-KFMD-RPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDDR 771 (774)
Q Consensus 698 ~~~~~~~--~~~~~~-~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (774)
++..+.. +.+... .+++.|+..+.. +..+ +..+. .+++....+..||.++.+.|+++|||+|..-+
T Consensus 682 ~v~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~~r~~~~Lv~~~~~~E~~~~ 752 (941)
T KOG0351|consen 682 LVTIYTLSERFTLAAIEDVGGGTLIQKAAKAEPLHDGLP--------AHGKGKGQSTSDAERLLRKLVAEGFIEEYDSA 752 (941)
T ss_pred hheeeeccchhhhhhHHhcccccHhHHHHHhcCcccccc--------ccCcccccccchHHHHHHHHHhhhhHHHhhhh
Confidence 8888763 222222 677777444322 1111 12222 23455677899999999999999999987644
No 5
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=5.1e-77 Score=691.32 Aligned_cols=467 Identities=37% Similarity=0.574 Sum_probs=394.6
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcCCcEE
Q 004098 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTAC 241 (774)
Q Consensus 162 ~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~ 241 (774)
.++|++.|||++|||+|.++|+++++|+|++++||||+|||+||++|++..++.+|||+|+++||.||++.|+.+|+.+.
T Consensus 2 ~~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~ 81 (591)
T TIGR01389 2 QQVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAA 81 (591)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCChHHH---HHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHH
Q 004098 242 FLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLREN 318 (774)
Q Consensus 242 ~l~~~~~~~~~---~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~ 318 (774)
.++++...... ...+..+.++|+|+|||++.... +...+...++++||||||||+++|||+|||.|.+|..++..
T Consensus 82 ~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~--~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~ 159 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDY--FLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAER 159 (591)
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChH--HHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHh
Confidence 99988776432 33455688999999999986422 23445567899999999999999999999999999999988
Q ss_pred hcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHh
Q 004098 319 FGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTK 398 (774)
Q Consensus 319 ~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~ 398 (774)
++ +.|+++||||+++.+..++...|++.. +..+..+++|+|+.+.+...... ...+.
T Consensus 160 ~~---------~~~vi~lTAT~~~~~~~~i~~~l~~~~-~~~~~~~~~r~nl~~~v~~~~~~--------~~~l~----- 216 (591)
T TIGR01389 160 FP---------QVPRIALTATADAETRQDIRELLRLAD-ANEFITSFDRPNLRFSVVKKNNK--------QKFLL----- 216 (591)
T ss_pred CC---------CCCEEEEEeCCCHHHHHHHHHHcCCCC-CCeEecCCCCCCcEEEEEeCCCH--------HHHHH-----
Confidence 87 778999999999999999999999874 55677899999999988753211 11111
Q ss_pred hhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCC
Q 004098 399 KKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGH 478 (774)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 478 (774)
+++
T Consensus 217 -----------------------------------------------------------~~l------------------ 219 (591)
T TIGR01389 217 -----------------------------------------------------------DYL------------------ 219 (591)
T ss_pred -----------------------------------------------------------HHH------------------
Confidence 111
Q ss_pred CCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHH
Q 004098 479 SPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF 558 (774)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F 558 (774)
... .+.++||||+|++.++.+++.|...|+.+..|||+|++++|..++++|
T Consensus 220 ----------------------------~~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F 270 (591)
T TIGR01389 220 ----------------------------KKH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDF 270 (591)
T ss_pred ----------------------------Hhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHH
Confidence 111 245899999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCCCc---cCCC-CCCHHHH
Q 004098 559 HENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPS-RRSEDQT 634 (774)
Q Consensus 559 ~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~~---~~~~-~~~~~~~ 634 (774)
.+|+++|||||++++||||+|+|++||||++|.|+++|+||+|||||+|.+|.|++||++.|... ++.. .......
T Consensus 271 ~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~~~~~~~ 350 (591)
T TIGR01389 271 LYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIEQSEADDDYK 350 (591)
T ss_pred HcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHhccCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877543 2222 1222222
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHcCCCCCCcCCCCCCCCCCCCCcccchHHHHHHHHHHHHHHhccCCcc-ccee
Q 004098 635 KQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSNSM-DDDD 713 (774)
Q Consensus 635 ~~~~~~l~~~~~y~~~~~~Crr~~l~~~f~~~~~~~~c~~Cd~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 713 (774)
......+..|..|| ++..|||+++++||||.. ...|++||||.. +++.+|+|.+|++++++|.++.+..+.. .+++
T Consensus 351 ~~~~~~l~~~~~~~-~~~~c~r~~~~~~f~~~~-~~~c~~cd~c~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (591)
T TIGR01389 351 QIEREKLRAMIAYC-ETQTCRRAYILRYFGENE-VEPCGNCDNCLD-PPKSYDATVEAQKALSCVYRMGQRFGVGYIIEV 427 (591)
T ss_pred HHHHHHHHHHHHHH-cccccHhHHHHHhcCCCC-CCCCCCCCCCCC-CCceeehHHHHHHHHHHHHHhcCCCchhHhHHH
Confidence 33355677778888 678999999999999974 468999999987 6788999999999999999987665543 3899
Q ss_pred eeccCcccccccCCCCccchhhhhhhhhhccccCCHHHHHHHHHHHHHcCCceecCC
Q 004098 714 GIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDD 770 (774)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (774)
++|+.++......+.++++| |.++..+..||+.++++|+..|||.+..+
T Consensus 428 ~~g~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~l~~~~~l~~~~~ 476 (591)
T TIGR01389 428 LRGSKNDKILQKGHDQLSTY--------GIGKDYTQKEWRSLIDQLIAEGLLTENDE 476 (591)
T ss_pred HhCccchhHHhcCcccCCcc--------CcCCCCCHHHHHHHHHHHHHcCCceeccC
Confidence 99976655444445667776 33457899999999999999999998765
No 6
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.4e-75 Score=653.66 Aligned_cols=442 Identities=38% Similarity=0.632 Sum_probs=364.4
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEE
Q 004098 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFL 243 (774)
Q Consensus 164 ~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l 243 (774)
+|++.|||..|||+|.++|+++++|+|++++||||+|||+||++|++..++.+|||+||++|+.||++.+..+|+.++.+
T Consensus 2 ~l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l 81 (470)
T TIGR00614 2 ILKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFL 81 (470)
T ss_pred hhHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEE
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHH---HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhc
Q 004098 244 GSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFG 320 (774)
Q Consensus 244 ~~~~~~~~---~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~ 320 (774)
+++..... ....+..+.++|+|+|||++......+..+....++++||||||||+++|||+|++.|..|..++..++
T Consensus 82 ~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~ 161 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFP 161 (470)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcC
Confidence 98876643 223445677999999999986432211222256789999999999999999999999999999998887
Q ss_pred ccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhh
Q 004098 321 ANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKK 400 (774)
Q Consensus 321 ~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~ 400 (774)
+.|+++||||+++.+..++...|++. .+.++..+++++|+.+.+...... .+..+..
T Consensus 162 ---------~~~~l~lTAT~~~~~~~di~~~l~l~-~~~~~~~s~~r~nl~~~v~~~~~~-------~~~~l~~------ 218 (470)
T TIGR00614 162 ---------NVPIMALTATASPSVREDILRQLNLK-NPQIFCTSFDRPNLYYEVRRKTPK-------ILEDLLR------ 218 (470)
T ss_pred ---------CCceEEEecCCCHHHHHHHHHHcCCC-CCcEEeCCCCCCCcEEEEEeCCcc-------HHHHHHH------
Confidence 78999999999999999999999987 567788899999999988754311 1111111
Q ss_pred cccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCC
Q 004098 401 KTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSP 480 (774)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 480 (774)
T Consensus 219 -------------------------------------------------------------------------------- 218 (470)
T TIGR00614 219 -------------------------------------------------------------------------------- 218 (470)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc
Q 004098 481 HRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE 560 (774)
Q Consensus 481 ~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~ 560 (774)
.+.+..++.++||||+|++.++.++..|...|+.+..|||+|++++|..++++|++
T Consensus 219 ------------------------~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~ 274 (470)
T TIGR00614 219 ------------------------FIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQR 274 (470)
T ss_pred ------------------------HHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHc
Confidence 11111144568999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCCCc---cCCCCCCHHHHHHH
Q 004098 561 NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPSRRSEDQTKQA 637 (774)
Q Consensus 561 g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~~---~~~~~~~~~~~~~~ 637 (774)
|+++|||||++++||||+|+|++||||++|.|++.|+||+|||||+|.+|.|++||++.|... ++.......+....
T Consensus 275 g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 354 (470)
T TIGR00614 275 DEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLMEEPDGQQRTYK 354 (470)
T ss_pred CCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhcCCchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887653 23222222222223
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHcCCCCC---------CcCCCCCCCCCC-----CCCcccchHHHHHHHHHHHHHHh
Q 004098 638 YRMLSDCFRYGMNTSCCRAKILVEYFGEDFS---------HEKCQLCDVCVD-----GPPEMKNLKEEANILMQVIAAYN 703 (774)
Q Consensus 638 ~~~l~~~~~y~~~~~~Crr~~l~~~f~~~~~---------~~~c~~Cd~C~~-----~~~~~~~~~~~~~~~~~~~~~~~ 703 (774)
..++..+ .||.++..|||++|++||||... ...|++||+|.. .+...+|++.+|++++++|.+.+
T Consensus 355 ~~~~~~~-~~~~~~~~crr~~l~~~f~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (470)
T TIGR00614 355 LKLYEMM-EYCLNSSTCRRLILLSHFGEKQLNKSFGIMGTEKCCDNCCKRLDYKTKDVTDKVYDFGPQAQKALSAVGRLN 433 (470)
T ss_pred HHHHHHH-HHHhccccCHHHHHHHHcCCcccccccccccCCCCCCCCCCccccccCCCChhHhhHHHHHHHHHHHHHHhc
Confidence 3444443 55569999999999999999521 234555555543 14567899999999999999987
Q ss_pred ccCCccc-ceeeeccCcccccccCCCCccch
Q 004098 704 EQSNSMD-DDDGIYSGIKKQKFMDRPNLKMF 733 (774)
Q Consensus 704 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 733 (774)
+..+... +|+++|+++++.+..++.++++|
T Consensus 434 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 464 (470)
T TIGR00614 434 QKFGMGYPIDFLRGSNSQKLRDRGFRKHSLY 464 (470)
T ss_pred CCCchhhhHHHHhCCcchhHHhcCCCcCCcc
Confidence 6655533 89999987776666677889988
No 7
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=2.4e-74 Score=578.17 Aligned_cols=425 Identities=35% Similarity=0.607 Sum_probs=366.4
Q ss_pred CCcccCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHH
Q 004098 148 PKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMH 227 (774)
Q Consensus 148 ~~~~~~~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~ 227 (774)
..+....++|+.+..++|++.|.+..|||.|.++|++.+.|+|+++++|||+||||||+||+|...+.+|||+|+++||+
T Consensus 69 aawdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislme 148 (695)
T KOG0353|consen 69 AAWDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLME 148 (695)
T ss_pred cccccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHH
Confidence 33445689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEcCCCChHHH---HHHHH--cCCceEEEEChHHHHH---HHHHHHHHHHhcCccEEEEecccccc
Q 004098 228 DQCSKLSKHGVTACFLGSGQPDNKV---EQKAL--RGMYSIIYVCPETVIR---LIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 228 qq~~~l~~~gi~~~~l~~~~~~~~~---~~~~~--~~~~~Ilv~TPe~l~~---ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
+|.-.|+.+||.+..++...+.+.. +..+. ...++++|+|||.+.. ++..+.+.+....+.+|.|||+||-+
T Consensus 149 dqil~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccs 228 (695)
T KOG0353|consen 149 DQILQLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCS 228 (695)
T ss_pred HHHHHHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehh
Confidence 9999999999999999988776432 22222 3458999999999974 56667777788899999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCC
Q 004098 300 KWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT 379 (774)
Q Consensus 300 ~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~ 379 (774)
+|||||||+|..|+.+.+.|+ +.|+++||||++..+..|....|++. ....+..+|+|||+.|.|...+.
T Consensus 229 qwghdfr~dy~~l~ilkrqf~---------~~~iigltatatn~vl~d~k~il~ie-~~~tf~a~fnr~nl~yev~qkp~ 298 (695)
T KOG0353|consen 229 QWGHDFRPDYKALGILKRQFK---------GAPIIGLTATATNHVLDDAKDILCIE-AAFTFRAGFNRPNLKYEVRQKPG 298 (695)
T ss_pred hhCcccCcchHHHHHHHHhCC---------CCceeeeehhhhcchhhHHHHHHhHH-hhheeecccCCCCceeEeeeCCC
Confidence 999999999999999999998 89999999999999999999999987 57889999999999999998665
Q ss_pred ccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhh
Q 004098 380 SSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEF 459 (774)
Q Consensus 380 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (774)
... .+.+++
T Consensus 299 n~d-d~~edi---------------------------------------------------------------------- 307 (695)
T KOG0353|consen 299 NED-DCIEDI---------------------------------------------------------------------- 307 (695)
T ss_pred ChH-HHHHHH----------------------------------------------------------------------
Confidence 432 222222
Q ss_pred hhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCce
Q 004098 460 LENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539 (774)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~ 539 (774)
..+++....++.+||||-+++.++.++..|+..|+.+
T Consensus 308 -------------------------------------------~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a 344 (695)
T KOG0353|consen 308 -------------------------------------------AKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHA 344 (695)
T ss_pred -------------------------------------------HHHhccccCCCcceEEEeccccHHHHHHHHHhcCccc
Confidence 2222333367789999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHH---------------------
Q 004098 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQ--------------------- 598 (774)
Q Consensus 540 ~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Q--------------------- 598 (774)
..||+.|.+++|.-+++.|..|+++|+|||.+||||||+|+||+|||+.+|+|+++|||
T Consensus 345 ~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggs 424 (695)
T KOG0353|consen 345 GAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGS 424 (695)
T ss_pred cccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------------------HhhccccCCCcceEEEEeeCCCCCccCCCCCCHHHHHH-HHHHHHHHHHhccccchhH
Q 004098 599 ----------------------EAGRAGRDGHLADCVLYANLSSMPTLLPSRRSEDQTKQ-AYRMLSDCFRYGMNTSCCR 655 (774)
Q Consensus 599 ----------------------r~GRaGR~G~~g~~il~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~y~~~~~~Cr 655 (774)
+.|||||+|.++.|++||...|+-+... -.++++ ..+.|-.|++||.+.+.||
T Consensus 425 tqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ss----mv~~e~~g~q~ly~mv~y~~d~s~cr 500 (695)
T KOG0353|consen 425 TQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKISS----MVQMENTGIQKLYEMVRYAADISKCR 500 (695)
T ss_pred ceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHHH----HHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 8999999999999999999888653221 112221 2334556678889999999
Q ss_pred HHHHHHHcCCCCCCcCCC-CCCCCCCCC-CcccchHHHHHHHHHHHH
Q 004098 656 AKILVEYFGEDFSHEKCQ-LCDVCVDGP-PEMKNLKEEANILMQVIA 700 (774)
Q Consensus 656 r~~l~~~f~~~~~~~~c~-~Cd~C~~~~-~~~~~~~~~~~~~~~~~~ 700 (774)
|..+.++|+|.+.++.|+ +||+|.+.. .+..+.++..+-+....+
T Consensus 501 rv~laehfde~w~~~~c~k~cd~c~~~n~f~~~n~~ey~~dl~e~~k 547 (695)
T KOG0353|consen 501 RVKLAEHFDEAWEPEACNKMCDNCCKDNAFEGKNIKEYCRDLIEAAK 547 (695)
T ss_pred HHHHHHHHHhhcCHHHHHHHhhhhccCccccccchHHHHHHHHHHHH
Confidence 999999999999989997 799998753 355667776666665544
No 8
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-72 Score=574.22 Aligned_cols=408 Identities=35% Similarity=0.560 Sum_probs=337.9
Q ss_pred HHHHHHHHHHhcCCCCC-CHHHHHHHHHHHcC-CCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHh
Q 004098 158 EVKVNSLLKKHFGHSSL-KNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSK 235 (774)
Q Consensus 158 ~~~l~~~L~~~~g~~~~-r~~Q~~ai~~il~g-~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~ 235 (774)
+..+.++|++.||+.+| ++.|..|+..+.++ +|+.|+||||+|||||||||+|+.++.+||++|+++|++||++.|.+
T Consensus 4 Er~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~ 83 (641)
T KOG0352|consen 4 ERKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKR 83 (641)
T ss_pred HHHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHh
Confidence 45789999999999998 67999999999875 69999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEcCCCChHHHHH---HH--HcCCceEEEEChHHHHH-HH-HHHHHHHHhcCccEEEEecccccccCCCCcHHH
Q 004098 236 HGVTACFLGSGQPDNKVEQ---KA--LRGMYSIIYVCPETVIR-LI-KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPD 308 (774)
Q Consensus 236 ~gi~~~~l~~~~~~~~~~~---~~--~~~~~~Ilv~TPe~l~~-ll-~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~ 308 (774)
+.+++-.|++..+..+..+ .+ ......++|.|||+... .+ ..++.+.+...++|||+|||||+++|||||||+
T Consensus 84 LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPD 163 (641)
T KOG0352|consen 84 LKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPD 163 (641)
T ss_pred cCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcc
Confidence 9999999998776543222 22 23457899999998763 23 335666677889999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHh
Q 004098 309 YRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKD 388 (774)
Q Consensus 309 ~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~ 388 (774)
|.+|+.|+..++ ++|.++||||++++|.+||...|++..+..++.+..+|.|++|.+..+. ...+.
T Consensus 164 YL~LG~LRS~~~---------~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~-----~I~D~ 229 (641)
T KOG0352|consen 164 YLTLGSLRSVCP---------GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKS-----FITDC 229 (641)
T ss_pred hhhhhhHHhhCC---------CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHH-----HhhhH
Confidence 999999999998 9999999999999999999999999999999999999999999875432 22233
Q ss_pred HHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCccc
Q 004098 389 FCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDW 468 (774)
Q Consensus 389 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 468 (774)
+..|.+..... |-++
T Consensus 230 ~~~LaDF~~~~------------------------------------------------------------LG~~----- 244 (641)
T KOG0352|consen 230 LTVLADFSSSN------------------------------------------------------------LGKH----- 244 (641)
T ss_pred hHhHHHHHHHh------------------------------------------------------------cCCh-----
Confidence 33333322110 0000
Q ss_pred ccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCH
Q 004098 469 DVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPK 548 (774)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~ 548 (774)
+...... ....+.+||||.||+.|+.++-.|...|+.+..||+||..
T Consensus 245 ----------------------~~~~~~~-----------K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~ 291 (641)
T KOG0352|consen 245 ----------------------EKASQNK-----------KTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKK 291 (641)
T ss_pred ----------------------hhhhcCC-----------CCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhccccc
Confidence 0000000 0035689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCCCc---cC
Q 004098 549 SQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LL 625 (774)
Q Consensus 549 ~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~~---~~ 625 (774)
.+|..++++|.++++.||+||..||||+|+|+||+|||+++|+|+..|||+.|||||+|.++.|-+||+..|... ++
T Consensus 292 ~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 292 KERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred chhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877653 22
Q ss_pred --------CCCCCHHHHHHHHHHHHHHHHhccccchhHHHHHHHHcCCCCCCcCCC-CCCCCCC
Q 004098 626 --------PSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ-LCDVCVD 680 (774)
Q Consensus 626 --------~~~~~~~~~~~~~~~l~~~~~y~~~~~~Crr~~l~~~f~~~~~~~~c~-~Cd~C~~ 680 (774)
....++.+.+.....+..+..|| +...||++.+..|||+.. +.|. +||+|..
T Consensus 372 ~~e~aklrek~~ke~~~k~~I~~F~k~~eFC-E~~~CRH~~ia~fFgD~~--p~ckg~cd~c~~ 432 (641)
T KOG0352|consen 372 SGELAKLREKAKKEMQIKSIITGFAKMLEFC-ESARCRHVSIASFFDDTE--CPCKTNCDYCRD 432 (641)
T ss_pred hhHHHHHHHhcchhhhHHHHHHHHHHHHHHH-HHcccchHHHHHhcCCCC--CCCCCCccccCC
Confidence 12234445555666677777888 788999999999999875 3564 5888864
No 9
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-59 Score=508.36 Aligned_cols=339 Identities=22% Similarity=0.332 Sum_probs=282.0
Q ss_pred ccCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc------------cCCeEEE
Q 004098 151 VEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------------TGKVVVV 218 (774)
Q Consensus 151 ~~~~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~------------~~~~~LV 218 (774)
.-...++++.+...|+ ..||..|+|+|.++||.++.|+|++.+|.|||||||+|+||++. .++.+||
T Consensus 92 ~f~~~~ls~~~~~~lk-~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 92 AFQELGLSEELMKALK-EQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhcccccHHHHHHHH-hcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 4457788889999998 55999999999999999999999999999999999999999974 1689999
Q ss_pred EccchHHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEec
Q 004098 219 ISPLISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDE 294 (774)
Q Consensus 219 vsPt~~L~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDE 294 (774)
|+|||+|+.|+.+.+.++ +++.++++||.+...+...+ ..+++|+|+||++|.++++ .+.+++.++.|+|+||
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l-~~gvdiviaTPGRl~d~le--~g~~~l~~v~ylVLDE 247 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDL-ERGVDVVIATPGRLIDLLE--EGSLNLSRVTYLVLDE 247 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHH-hcCCcEEEeCChHHHHHHH--cCCccccceeEEEecc
Confidence 999999999999999987 46789999999886655544 4568999999999999999 7888899999999999
Q ss_pred ccccccCCCCcHHHHHHHHHHHHHhcccccccc-cCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEE
Q 004098 295 VHCVSKWGHDFRPDYRRLSVLRENFGANNLKSL-KFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFS 373 (774)
Q Consensus 295 aH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l-~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~ 373 (774)
||+|+++| |++++++| +..+ ++..|++++|||++.+++.-....|+ . ...+ .
T Consensus 248 ADrMldmG--Fe~qI~~I-----------l~~i~~~~rQtlm~saTwp~~v~~lA~~fl~-~-~~~i------------~ 300 (519)
T KOG0331|consen 248 ADRMLDMG--FEPQIRKI-----------LSQIPRPDRQTLMFSATWPKEVRQLAEDFLN-N-PIQI------------N 300 (519)
T ss_pred HHhhhccc--cHHHHHHH-----------HHhcCCCcccEEEEeeeccHHHHHHHHHHhc-C-ceEE------------E
Confidence 99999999 99999999 3444 34568999999999999998888886 2 2221 1
Q ss_pred EeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCcc
Q 004098 374 VKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGK 453 (774)
Q Consensus 374 v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (774)
+...+.
T Consensus 301 ig~~~~-------------------------------------------------------------------------- 306 (519)
T KOG0331|consen 301 VGNKKE-------------------------------------------------------------------------- 306 (519)
T ss_pred ecchhh--------------------------------------------------------------------------
Confidence 111100
Q ss_pred chhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCC--CCCcEEEEeCchHHHHHHHHH
Q 004098 454 EMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL--EDGLTIIYVPTRKETLSIAKY 531 (774)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~--~~~~~IIF~~sr~~~~~l~~~ 531 (774)
+..++.+. +..+.++...|...+..+|.... ..+++||||+|++.|++|+..
T Consensus 307 -----~~a~~~i~---------------------qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~ 360 (519)
T KOG0331|consen 307 -----LKANHNIR---------------------QIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARN 360 (519)
T ss_pred -----hhhhcchh---------------------hhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHH
Confidence 00000001 11112223344445555555443 566999999999999999999
Q ss_pred HHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcce
Q 004098 532 LCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD 611 (774)
Q Consensus 532 L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~ 611 (774)
|+..++++..+||+.+|.+|+.+++.|++|++.|||||++++||||+|+|++|||||+|.++++|+||+|||||+|+.|.
T Consensus 361 l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~ 440 (519)
T KOG0331|consen 361 LRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGT 440 (519)
T ss_pred HHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCC
Q 004098 612 CVLYANLSS 620 (774)
Q Consensus 612 ~il~~~~~~ 620 (774)
+++|++..+
T Consensus 441 A~tfft~~~ 449 (519)
T KOG0331|consen 441 AITFFTSDN 449 (519)
T ss_pred EEEEEeHHH
Confidence 999997544
No 10
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.3e-54 Score=492.11 Aligned_cols=333 Identities=22% Similarity=0.316 Sum_probs=266.1
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc-----------CCeEEEEccc
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT-----------GKVVVVISPL 222 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~-----------~~~~LVvsPt 222 (774)
...+++.+.+.|+ .+||..|+|+|.++||.+++|+|+|++||||||||++|+||++.. ++.+|||+||
T Consensus 134 ~~~l~~~l~~~l~-~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PT 212 (545)
T PTZ00110 134 YTSFPDYILKSLK-NAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPT 212 (545)
T ss_pred hcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECCh
Confidence 3467788999998 569999999999999999999999999999999999999999742 5689999999
Q ss_pred hHHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 004098 223 ISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (774)
Q Consensus 223 ~~L~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l 298 (774)
++|+.|+.+.+.++ +++++.++++.+....... +...++|+|+||++|.+++. .....+.++++|||||||++
T Consensus 213 reLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~-l~~~~~IlVaTPgrL~d~l~--~~~~~l~~v~~lViDEAd~m 289 (545)
T PTZ00110 213 RELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYA-LRRGVEILIACPGRLIDFLE--SNVTNLRRVTYLVLDEADRM 289 (545)
T ss_pred HHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHH-HHcCCCEEEECHHHHHHHHH--cCCCChhhCcEEEeehHHhh
Confidence 99999999999986 4677888888776544333 44568999999999998887 45566788999999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCC---CCCcEEEEe
Q 004098 299 SKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFF---RPNLRFSVK 375 (774)
Q Consensus 299 ~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~---r~~l~~~v~ 375 (774)
++|| |++.+.+|.. .++++.|++++|||++.++.......+... ...+...... ..++...+.
T Consensus 290 ld~g--f~~~i~~il~-----------~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~-~v~i~vg~~~l~~~~~i~q~~~ 355 (545)
T PTZ00110 290 LDMG--FEPQIRKIVS-----------QIRPDRQTLMWSATWPKEVQSLARDLCKEE-PVHVNVGSLDLTACHNIKQEVF 355 (545)
T ss_pred hhcc--hHHHHHHHHH-----------hCCCCCeEEEEEeCCCHHHHHHHHHHhccC-CEEEEECCCccccCCCeeEEEE
Confidence 9999 9998887732 234588999999999887765443333211 1111111110 001110000
Q ss_pred ecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccch
Q 004098 376 HSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEM 455 (774)
Q Consensus 376 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (774)
T Consensus 356 -------------------------------------------------------------------------------- 355 (545)
T PTZ00110 356 -------------------------------------------------------------------------------- 355 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCC-CCCcEEEEeCchHHHHHHHHHHHh
Q 004098 456 SVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCG 534 (774)
Q Consensus 456 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~-~~~~~IIF~~sr~~~~~l~~~L~~ 534 (774)
......+...+..+|.... ...++||||++++.|+.|++.|..
T Consensus 356 ------------------------------------~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~ 399 (545)
T PTZ00110 356 ------------------------------------VVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRL 399 (545)
T ss_pred ------------------------------------EEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHH
Confidence 0011122333333343333 456999999999999999999999
Q ss_pred CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEE
Q 004098 535 FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL 614 (774)
Q Consensus 535 ~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il 614 (774)
.++.+..+||++++++|..++++|++|+.+|||||++++||||+|+|++|||||+|.++++|+||+|||||+|+.|.|++
T Consensus 400 ~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~ 479 (545)
T PTZ00110 400 DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYT 479 (545)
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCC
Q 004098 615 YANLSS 620 (774)
Q Consensus 615 ~~~~~~ 620 (774)
|++..+
T Consensus 480 ~~~~~~ 485 (545)
T PTZ00110 480 FLTPDK 485 (545)
T ss_pred EECcch
Confidence 998654
No 11
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-55 Score=443.01 Aligned_cols=335 Identities=19% Similarity=0.247 Sum_probs=273.8
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc------cCCeEEEEccchHHHH
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMH 227 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~------~~~~~LVvsPt~~L~~ 227 (774)
...+.+++.++++ ..|+..|+++|.++||.++.|+|+|..|.||||||.+|+||++. +...++|++|||+|+.
T Consensus 65 dLgv~~~L~~ac~-~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~ 143 (476)
T KOG0330|consen 65 DLGVHPELLEACQ-ELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQ 143 (476)
T ss_pred hcCcCHHHHHHHH-HhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHH
Confidence 4567788999998 56899999999999999999999999999999999999999985 3578999999999999
Q ss_pred HHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCC
Q 004098 228 DQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303 (774)
Q Consensus 228 qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~ 303 (774)
|+...+..+ |++++.+.||..... +...+...++|+|+||++|++++.+ .+.+++..++++|+||||+++++.
T Consensus 144 QI~e~fe~Lg~~iglr~~~lvGG~~m~~-q~~~L~kkPhilVaTPGrL~dhl~~-Tkgf~le~lk~LVlDEADrlLd~d- 220 (476)
T KOG0330|consen 144 QIAEQFEALGSGIGLRVAVLVGGMDMML-QANQLSKKPHILVATPGRLWDHLEN-TKGFSLEQLKFLVLDEADRLLDMD- 220 (476)
T ss_pred HHHHHHHHhccccCeEEEEEecCchHHH-HHHHhhcCCCEEEeCcHHHHHHHHh-ccCccHHHhHHHhhchHHhhhhhh-
Confidence 999999886 688999999887744 4455667789999999999998875 455677889999999999999866
Q ss_pred CcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccch
Q 004098 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383 (774)
Q Consensus 304 ~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~ 383 (774)
|.+.+.+| ++.+|+..+++++|||++.++.+.....|. .+..+. +....
T Consensus 221 -F~~~ld~I-----------Lk~ip~erqt~LfsATMt~kv~kL~rasl~---~p~~v~-----------~s~ky----- 269 (476)
T KOG0330|consen 221 -FEEELDYI-----------LKVIPRERQTFLFSATMTKKVRKLQRASLD---NPVKVA-----------VSSKY----- 269 (476)
T ss_pred -hHHHHHHH-----------HHhcCccceEEEEEeecchhhHHHHhhccC---CCeEEe-----------ccchh-----
Confidence 99999988 445567999999999999999886655553 122111 11100
Q ss_pred hhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcC
Q 004098 384 SYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND 463 (774)
Q Consensus 384 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (774)
.-+..+.+. |+.
T Consensus 270 ---~tv~~lkQ~---------------------------------------------------------------ylf-- 281 (476)
T KOG0330|consen 270 ---QTVDHLKQT---------------------------------------------------------------YLF-- 281 (476)
T ss_pred ---cchHHhhhh---------------------------------------------------------------eEe--
Confidence 001111111 110
Q ss_pred CCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEec
Q 004098 464 SVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYN 543 (774)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h 543 (774)
+....|...++.+|++. .+.++||||+|..+++.++-.|+..|+.+..+|
T Consensus 282 -----------------------------v~~k~K~~yLV~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~Lh 331 (476)
T KOG0330|consen 282 -----------------------------VPGKDKDTYLVYLLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLH 331 (476)
T ss_pred -----------------------------ccccccchhHHHHHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceeccc
Confidence 01111223334444433 557999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCC
Q 004098 544 ASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (774)
Q Consensus 544 ~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~ 621 (774)
|.|++..|...++.|++|...||||||+++||+|+|.|++|||||+|.+..+|+||+||+||+|++|.+|.|++-.|+
T Consensus 332 Gqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDv 409 (476)
T KOG0330|consen 332 GQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDV 409 (476)
T ss_pred chhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999875443
No 12
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4.2e-54 Score=449.77 Aligned_cols=342 Identities=24% Similarity=0.309 Sum_probs=280.8
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---------------cCCeEEE
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---------------TGKVVVV 218 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---------------~~~~~LV 218 (774)
..+++.++.++++ ..||..|+|+|+.|||..++.+|+|.+|.||||||++|++|++. .++.++|
T Consensus 249 E~~~P~e~l~~I~-~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaii 327 (673)
T KOG0333|consen 249 ESGFPLELLSVIK-KPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAII 327 (673)
T ss_pred hcCCCHHHHHHHH-hcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeee
Confidence 4558888888887 56999999999999999999999999999999999999999873 3889999
Q ss_pred EccchHHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEec
Q 004098 219 ISPLISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDE 294 (774)
Q Consensus 219 vsPt~~L~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDE 294 (774)
++|||+|++|+..+-.++ |++++.+.+|....+. .-.+..+|+|+|+||++|.+.+. +.++.+.++.+||+||
T Consensus 328 laptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq-~fqls~gceiviatPgrLid~Le--nr~lvl~qctyvvlde 404 (673)
T KOG0333|consen 328 LAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQ-GFQLSMGCEIVIATPGRLIDSLE--NRYLVLNQCTYVVLDE 404 (673)
T ss_pred echHHHHHHHHHHHHHHhcccccceEEEEecccchhhh-hhhhhccceeeecCchHHHHHHH--HHHHHhccCceEeccc
Confidence 999999999999998875 7889999998877543 23455679999999999999888 7788899999999999
Q ss_pred ccccccCCCCcHHHHHHHHHHHHHhccccccc---------------cc--CCCCEEEEeccCCHHHHHHHHHHcCCCCC
Q 004098 295 VHCVSKWGHDFRPDYRRLSVLRENFGANNLKS---------------LK--FDIPLMALTATATIQVREDILKSLHMSKG 357 (774)
Q Consensus 295 aH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~---------------l~--~~~~il~lTAT~~~~~~~~i~~~L~~~~~ 357 (774)
|++|.++| |.|++.++.. .+|..+.+. -. .-.|.++||||+++.+.......|.- +
T Consensus 405 adrmiDmg--fE~dv~~iL~---~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~--p 477 (673)
T KOG0333|consen 405 ADRMIDMG--FEPDVQKILE---QMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRR--P 477 (673)
T ss_pred hhhhhccc--ccHHHHHHHH---hCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhC--C
Confidence 99999999 9999998843 344333320 01 11789999999999888766666642 2
Q ss_pred ceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCC
Q 004098 358 TKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIG 437 (774)
Q Consensus 358 ~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (774)
..+...+..++.-...
T Consensus 478 v~vtig~~gk~~~rve---------------------------------------------------------------- 493 (673)
T KOG0333|consen 478 VVVTIGSAGKPTPRVE---------------------------------------------------------------- 493 (673)
T ss_pred eEEEeccCCCCccchh----------------------------------------------------------------
Confidence 2222222222211110
Q ss_pred CCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEE
Q 004098 438 DGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTII 517 (774)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~II 517 (774)
|.........+..+|+++|... ...++||
T Consensus 494 --------------------------------------------------Q~v~m~~ed~k~kkL~eil~~~-~~ppiII 522 (673)
T KOG0333|consen 494 --------------------------------------------------QKVEMVSEDEKRKKLIEILESN-FDPPIII 522 (673)
T ss_pred --------------------------------------------------eEEEEecchHHHHHHHHHHHhC-CCCCEEE
Confidence 1112223334555556666554 4569999
Q ss_pred EeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHH
Q 004098 518 YVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYY 597 (774)
Q Consensus 518 F~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~ 597 (774)
|+|+++.|+.||+.|.+.|++++.|||+-++++|+.+++.|++|..+|||||+++|||||+|||.+|||||+++|+++|.
T Consensus 523 FvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYt 602 (673)
T KOG0333|consen 523 FVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYT 602 (673)
T ss_pred EEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCCcceEEEEeeCCCC
Q 004098 598 QEAGRAGRDGHLADCVLYANLSSM 621 (774)
Q Consensus 598 Qr~GRaGR~G~~g~~il~~~~~~~ 621 (774)
|||||+||+|+.|.++.|+++.+.
T Consensus 603 HRIGRTgRAGk~GtaiSflt~~dt 626 (673)
T KOG0333|consen 603 HRIGRTGRAGKSGTAISFLTPADT 626 (673)
T ss_pred HHhccccccccCceeEEEeccchh
Confidence 999999999999999999987664
No 13
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-53 Score=432.44 Aligned_cols=375 Identities=20% Similarity=0.292 Sum_probs=293.4
Q ss_pred cccCchhhhhhhccCCCCCCCcccccCCCcCCCCC-cccCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEE
Q 004098 115 SVVSPSIVEEQKESYPGMDCNLKAESDSLAVSCPK-EVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLV 193 (774)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv 193 (774)
+.++++..++.....-.+........+.-|.+.|. ..+..|...+++.+.++ ..||.+|+|+|.+|||.+|+|.|++.
T Consensus 184 s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIk-K~GFqKPtPIqSQaWPI~LQG~DliG 262 (629)
T KOG0336|consen 184 SNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIK-KTGFQKPTPIQSQAWPILLQGIDLIG 262 (629)
T ss_pred ccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHH-hccCCCCCcchhcccceeecCcceEE
Confidence 45556666555554445555544444444433332 23446777788888888 45999999999999999999999999
Q ss_pred EecCCCchHHHHHHhhhc------------cCCeEEEEccchHHHHHHHHHHHhc---CCcEEEEcCCCChHHHHHHHHc
Q 004098 194 LAATGSGKSLCFQIPALL------------TGKVVVVISPLISLMHDQCSKLSKH---GVTACFLGSGQPDNKVEQKALR 258 (774)
Q Consensus 194 ~apTGsGKTl~~~lpal~------------~~~~~LVvsPt~~L~~qq~~~l~~~---gi~~~~l~~~~~~~~~~~~~~~ 258 (774)
+|.||+||||+|++|.+. .++.+||++||++|+.|+.-++.++ |.+.++++++....... ..+.
T Consensus 263 VAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqi-e~lk 341 (629)
T KOG0336|consen 263 VAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQI-EDLK 341 (629)
T ss_pred EEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHH-HHHh
Confidence 999999999999999874 2678999999999999999888875 77788888877765533 3455
Q ss_pred CCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEec
Q 004098 259 GMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338 (774)
Q Consensus 259 ~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTA 338 (774)
++++|+++||++|.++.. .+.+++..|.|+||||||+|+++| |+|.++++ +-.++|+.|+++.||
T Consensus 342 rgveiiiatPgrlndL~~--~n~i~l~siTYlVlDEADrMLDMg--FEpqIrki-----------lldiRPDRqtvmTSA 406 (629)
T KOG0336|consen 342 RGVEIIIATPGRLNDLQM--DNVINLASITYLVLDEADRMLDMG--FEPQIRKI-----------LLDIRPDRQTVMTSA 406 (629)
T ss_pred cCceEEeeCCchHhhhhh--cCeeeeeeeEEEEecchhhhhccc--ccHHHHHH-----------hhhcCCcceeeeecc
Confidence 678999999999998776 778889999999999999999999 99999999 556777999999999
Q ss_pred cCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCcc
Q 004098 339 TATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQS 418 (774)
Q Consensus 339 T~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (774)
|++..|+......|.- +..++..+.+--.. .+|... .-..-......
T Consensus 407 TWP~~VrrLa~sY~Ke--p~~v~vGsLdL~a~-~sVkQ~---i~v~~d~~k~~--------------------------- 453 (629)
T KOG0336|consen 407 TWPEGVRRLAQSYLKE--PMIVYVGSLDLVAV-KSVKQN---IIVTTDSEKLE--------------------------- 453 (629)
T ss_pred cCchHHHHHHHHhhhC--ceEEEecccceeee-eeeeee---EEecccHHHHH---------------------------
Confidence 9999999987777752 23333333221110 001000 00000000001
Q ss_pred CccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCc
Q 004098 419 DTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNK 498 (774)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 498 (774)
+...|+.
T Consensus 454 ------------------------------------~~~~f~~------------------------------------- 460 (629)
T KOG0336|consen 454 ------------------------------------IVQFFVA------------------------------------- 460 (629)
T ss_pred ------------------------------------HHHHHHH-------------------------------------
Confidence 1112222
Q ss_pred hhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCccc
Q 004098 499 PAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDK 578 (774)
Q Consensus 499 ~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDi 578 (774)
......++||||..+-.|+.|...|+-.|+.+..+||+-+|.+|+..++.|++|+++|||||++++||||+
T Consensus 461 ---------~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv 531 (629)
T KOG0336|consen 461 ---------NMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDV 531 (629)
T ss_pred ---------hcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCc
Confidence 22256799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCC
Q 004098 579 LNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (774)
Q Consensus 579 p~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~ 621 (774)
|+|.+|+|||+|.+++.|+||+||+||+|+.|.++.|+.-.|.
T Consensus 532 ~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~ 574 (629)
T KOG0336|consen 532 PDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDW 574 (629)
T ss_pred hhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhH
Confidence 9999999999999999999999999999999999999875553
No 14
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-52 Score=474.31 Aligned_cols=329 Identities=25% Similarity=0.356 Sum_probs=269.4
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc-----C--Ce-EEEEccchHH
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT-----G--KV-VVVISPLISL 225 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~-----~--~~-~LVvsPt~~L 225 (774)
...+...+.+.|.+ .||..|+|+|..+||.++.|+|+++.|+||+|||++|.+|++.+ . .. +||++|||+|
T Consensus 33 ~l~l~~~ll~~l~~-~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTREL 111 (513)
T COG0513 33 SLGLSPELLQALKD-LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTREL 111 (513)
T ss_pred hcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHH
Confidence 44578889999985 79999999999999999999999999999999999999999853 1 12 9999999999
Q ss_pred HHHHHHHHHhc-----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc
Q 004098 226 MHDQCSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (774)
Q Consensus 226 ~~qq~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~ 300 (774)
+.|+.+.+..+ ++.++.++||.+.......+.. +++|||+||++|++++. .+.+++..+.++|+||||+|++
T Consensus 112 A~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~-~~~ivVaTPGRllD~i~--~~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 112 AVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR-GVDIVVATPGRLLDLIK--RGKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc-CCCEEEECccHHHHHHH--cCCcchhhcCEEEeccHhhhhc
Confidence 99999999875 4678899999887665544444 59999999999999888 6677889999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEcc--C--CCCCcEEEEee
Q 004098 301 WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTS--F--FRPNLRFSVKH 376 (774)
Q Consensus 301 ~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~--~--~r~~l~~~v~~ 376 (774)
+| |.+++..| +..+|.+.|+++||||++..+.+-....+.- +..+.... . ..+++.
T Consensus 189 ~G--f~~~i~~I-----------~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~--p~~i~v~~~~~~~~~~~i~----- 248 (513)
T COG0513 189 MG--FIDDIEKI-----------LKALPPDRQTLLFSATMPDDIRELARRYLND--PVEIEVSVEKLERTLKKIK----- 248 (513)
T ss_pred CC--CHHHHHHH-----------HHhCCcccEEEEEecCCCHHHHHHHHHHccC--CcEEEEccccccccccCce-----
Confidence 98 99999999 4445568999999999999776666666651 11111110 0 001111
Q ss_pred cCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchh
Q 004098 377 SKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMS 456 (774)
Q Consensus 377 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (774)
T Consensus 249 -------------------------------------------------------------------------------- 248 (513)
T COG0513 249 -------------------------------------------------------------------------------- 248 (513)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcCCCcccccccccccCCCCCCCCCCccchhhcccc-CchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhC
Q 004098 457 VEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLL-NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF 535 (774)
Q Consensus 457 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~ 535 (774)
++.+.| ... .|...+..++ ......++||||+|+..++.|+..|...
T Consensus 249 ----------q~~~~v---------------------~~~~~k~~~L~~ll-~~~~~~~~IVF~~tk~~~~~l~~~l~~~ 296 (513)
T COG0513 249 ----------QFYLEV---------------------ESEEEKLELLLKLL-KDEDEGRVIVFVRTKRLVEELAESLRKR 296 (513)
T ss_pred ----------EEEEEe---------------------CCHHHHHHHHHHHH-hcCCCCeEEEEeCcHHHHHHHHHHHHHC
Confidence 111110 111 1222333333 3234457999999999999999999999
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEE
Q 004098 536 GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (774)
Q Consensus 536 g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~ 615 (774)
|+++..+||+|++++|.++++.|++|+++||||||+++||||+|+|++|||||+|.+++.|+||+|||||+|..|.+++|
T Consensus 297 g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~f 376 (513)
T COG0513 297 GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISF 376 (513)
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeC
Q 004098 616 ANL 618 (774)
Q Consensus 616 ~~~ 618 (774)
+.+
T Consensus 377 v~~ 379 (513)
T COG0513 377 VTE 379 (513)
T ss_pred eCc
Confidence 975
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.1e-52 Score=467.37 Aligned_cols=330 Identities=20% Similarity=0.227 Sum_probs=260.5
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc-------------cCCeEEEEc
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-------------TGKVVVVIS 220 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~-------------~~~~~LVvs 220 (774)
...+++.+.+.|. .+||..|+|+|.++|+.+++|+|++++||||+|||++|++|++. .++.+|||+
T Consensus 12 ~~~l~~~l~~~l~-~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~ 90 (423)
T PRK04837 12 DFALHPQVVEALE-KKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMA 90 (423)
T ss_pred hCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEEC
Confidence 3567888999998 57999999999999999999999999999999999999999873 136899999
Q ss_pred cchHHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 004098 221 PLISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVH 296 (774)
Q Consensus 221 Pt~~L~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH 296 (774)
||++|+.|+++.+..+ ++++..++++..... +...+...++|+|+||++|.+++. .+.+.+.++.+|||||||
T Consensus 91 PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~-~~~~l~~~~~IlV~TP~~l~~~l~--~~~~~l~~v~~lViDEad 167 (423)
T PRK04837 91 PTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDK-QLKVLESGVDILIGTTGRLIDYAK--QNHINLGAIQVVVLDEAD 167 (423)
T ss_pred CcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH-HHHHhcCCCCEEEECHHHHHHHHH--cCCcccccccEEEEecHH
Confidence 9999999998887664 688888888766544 333455678999999999998876 556677899999999999
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCC--CCCcEEEE
Q 004098 297 CVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFF--RPNLRFSV 374 (774)
Q Consensus 297 ~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~--r~~l~~~v 374 (774)
++++|| |...+..+. ..++.. ...+.+++|||++..+.+.+...++-+ ..+...... ..++....
T Consensus 168 ~l~~~~--f~~~i~~i~---~~~~~~------~~~~~~l~SAT~~~~~~~~~~~~~~~p--~~i~v~~~~~~~~~i~~~~ 234 (423)
T PRK04837 168 RMFDLG--FIKDIRWLF---RRMPPA------NQRLNMLFSATLSYRVRELAFEHMNNP--EYVEVEPEQKTGHRIKEEL 234 (423)
T ss_pred HHhhcc--cHHHHHHHH---HhCCCc------cceeEEEEeccCCHHHHHHHHHHCCCC--EEEEEcCCCcCCCceeEEE
Confidence 999999 877776653 222210 145679999999998887766666421 111111000 00110000
Q ss_pred eecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccc
Q 004098 375 KHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKE 454 (774)
Q Consensus 375 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (774)
..
T Consensus 235 ~~------------------------------------------------------------------------------ 236 (423)
T PRK04837 235 FY------------------------------------------------------------------------------ 236 (423)
T ss_pred Ee------------------------------------------------------------------------------
Confidence 00
Q ss_pred hhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHh
Q 004098 455 MSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG 534 (774)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~ 534 (774)
.....+...+..++.. ....++||||++++.|+.+++.|..
T Consensus 237 --------------------------------------~~~~~k~~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~ 277 (423)
T PRK04837 237 --------------------------------------PSNEEKMRLLQTLIEE-EWPDRAIIFANTKHRCEEIWGHLAA 277 (423)
T ss_pred --------------------------------------CCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHh
Confidence 0000111222222222 2356899999999999999999999
Q ss_pred CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEE
Q 004098 535 FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL 614 (774)
Q Consensus 535 ~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il 614 (774)
.|+.+..+||+|++++|..++++|++|+++|||||++++||||+|+|++|||||+|.+++.|+||+|||||+|+.|.|++
T Consensus 278 ~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~ 357 (423)
T PRK04837 278 DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSIS 357 (423)
T ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eee
Q 004098 615 YAN 617 (774)
Q Consensus 615 ~~~ 617 (774)
|+.
T Consensus 358 ~~~ 360 (423)
T PRK04837 358 LAC 360 (423)
T ss_pred EeC
Confidence 986
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=7.6e-52 Score=465.94 Aligned_cols=329 Identities=19% Similarity=0.266 Sum_probs=259.1
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc------------CCeEEEEccc
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------------GKVVVVISPL 222 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~------------~~~~LVvsPt 222 (774)
..+.+.+.+.|. .+||..|+|+|.++|+.+++|+|+|++||||+|||++|++|++.. ..++|||+||
T Consensus 6 l~l~~~l~~~l~-~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~Pt 84 (456)
T PRK10590 6 LGLSPDILRAVA-EQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPT 84 (456)
T ss_pred cCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCc
Confidence 356778899998 579999999999999999999999999999999999999999742 2379999999
Q ss_pred hHHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 004098 223 ISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (774)
Q Consensus 223 ~~L~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l 298 (774)
++|+.|+.+.+..+ ++.+..+.++..... +...+.+.++|+|+||++|.+++. ...+.+.++++|||||||++
T Consensus 85 reLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~-~~~~l~~~~~IiV~TP~rL~~~~~--~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 85 RELAAQIGENVRDYSKYLNIRSLVVFGGVSINP-QMMKLRGGVDVLVATPGRLLDLEH--QNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEECCcCHHH-HHHHHcCCCcEEEEChHHHHHHHH--cCCcccccceEEEeecHHHH
Confidence 99999999998875 577778887776544 333455778999999999988766 44556788999999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEc--cCCCCCcEEEEee
Q 004098 299 SKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT--SFFRPNLRFSVKH 376 (774)
Q Consensus 299 ~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~--~~~r~~l~~~v~~ 376 (774)
++|+ |...+..+. . .++...|++++|||++.++...+...+... ..+... ....+++...+..
T Consensus 162 l~~~--~~~~i~~il---~--------~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~--~~i~~~~~~~~~~~i~~~~~~ 226 (456)
T PRK10590 162 LDMG--FIHDIRRVL---A--------KLPAKRQNLLFSATFSDDIKALAEKLLHNP--LEIEVARRNTASEQVTQHVHF 226 (456)
T ss_pred hccc--cHHHHHHHH---H--------hCCccCeEEEEeCCCcHHHHHHHHHHcCCC--eEEEEecccccccceeEEEEE
Confidence 9998 777666652 2 234478999999999987766555544321 111111 1111111111100
Q ss_pred cCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchh
Q 004098 377 SKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMS 456 (774)
Q Consensus 377 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (774)
..
T Consensus 227 ~~------------------------------------------------------------------------------ 228 (456)
T PRK10590 227 VD------------------------------------------------------------------------------ 228 (456)
T ss_pred cC------------------------------------------------------------------------------
Confidence 00
Q ss_pred hhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCC
Q 004098 457 VEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG 536 (774)
Q Consensus 457 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g 536 (774)
......++..+.......++||||+++..++.+++.|...+
T Consensus 229 ---------------------------------------~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g 269 (456)
T PRK10590 229 ---------------------------------------KKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDG 269 (456)
T ss_pred ---------------------------------------HHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCC
Confidence 00011112222222245689999999999999999999999
Q ss_pred CceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEe
Q 004098 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616 (774)
Q Consensus 537 ~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~ 616 (774)
+.+..|||+|++++|.+++++|++|+++|||||+++++|||+|+|++|||||+|.++++|+||+|||||+|..|.|++|+
T Consensus 270 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~ 349 (456)
T PRK10590 270 IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLV 349 (456)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eCC
Q 004098 617 NLS 619 (774)
Q Consensus 617 ~~~ 619 (774)
...
T Consensus 350 ~~~ 352 (456)
T PRK10590 350 CVD 352 (456)
T ss_pred cHH
Confidence 643
No 17
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.2e-51 Score=466.34 Aligned_cols=333 Identities=21% Similarity=0.282 Sum_probs=258.8
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc-------------cCCeEEEE
Q 004098 153 IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-------------TGKVVVVI 219 (774)
Q Consensus 153 ~~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~-------------~~~~~LVv 219 (774)
....+++.+.+.|+ ..||..|+|+|.++|+.+++|+|+|++||||||||++|++|++. .++.+|||
T Consensus 124 ~~~~l~~~l~~~L~-~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL 202 (518)
T PLN00206 124 SSCGLPPKLLLNLE-TAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVL 202 (518)
T ss_pred HhCCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEE
Confidence 34567889999998 57999999999999999999999999999999999999999874 35689999
Q ss_pred ccchHHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecc
Q 004098 220 SPLISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEV 295 (774)
Q Consensus 220 sPt~~L~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEa 295 (774)
+||++|+.|+.+.++.+ ++.++.+.+|........ .+..+++|+|+||++|.+++. .+...+.++.+||||||
T Consensus 203 ~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~-~l~~~~~IiV~TPgrL~~~l~--~~~~~l~~v~~lViDEa 279 (518)
T PLN00206 203 TPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLY-RIQQGVELIVGTPGRLIDLLS--KHDIELDNVSVLVLDEV 279 (518)
T ss_pred eCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHH-HhcCCCCEEEECHHHHHHHHH--cCCccchheeEEEeecH
Confidence 99999999988887765 466777777766544333 345668999999999998877 44566788999999999
Q ss_pred cccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEe
Q 004098 296 HCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK 375 (774)
Q Consensus 296 H~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~ 375 (774)
|+|++|| |++.+..+.. .++ +.|++++|||++..+.......+. ....+......+++......
T Consensus 280 d~ml~~g--f~~~i~~i~~---~l~---------~~q~l~~SATl~~~v~~l~~~~~~--~~~~i~~~~~~~~~~~v~q~ 343 (518)
T PLN00206 280 DCMLERG--FRDQVMQIFQ---ALS---------QPQVLLFSATVSPEVEKFASSLAK--DIILISIGNPNRPNKAVKQL 343 (518)
T ss_pred HHHhhcc--hHHHHHHHHH---hCC---------CCcEEEEEeeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCcceeEE
Confidence 9999999 9988776632 222 679999999999887654433332 11111111111111100000
Q ss_pred ecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccch
Q 004098 376 HSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEM 455 (774)
Q Consensus 376 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (774)
.
T Consensus 344 ~------------------------------------------------------------------------------- 344 (518)
T PLN00206 344 A------------------------------------------------------------------------------- 344 (518)
T ss_pred E-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCC-CCCcEEEEeCchHHHHHHHHHHHh
Q 004098 456 SVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCG 534 (774)
Q Consensus 456 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~-~~~~~IIF~~sr~~~~~l~~~L~~ 534 (774)
.......+...+++.|.... ...++||||+++..++.+++.|..
T Consensus 345 -----------------------------------~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~ 389 (518)
T PLN00206 345 -----------------------------------IWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITV 389 (518)
T ss_pred -----------------------------------EeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhh
Confidence 00000111222333332211 235799999999999999999975
Q ss_pred -CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEE
Q 004098 535 -FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV 613 (774)
Q Consensus 535 -~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~i 613 (774)
.++.+..|||+|++++|..++++|++|+++|||||++++||||+|+|++|||||+|.++++|+||+|||||.|..|.++
T Consensus 390 ~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai 469 (518)
T PLN00206 390 VTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAI 469 (518)
T ss_pred ccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEE
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCC
Q 004098 614 LYANLS 619 (774)
Q Consensus 614 l~~~~~ 619 (774)
+|++..
T Consensus 470 ~f~~~~ 475 (518)
T PLN00206 470 VFVNEE 475 (518)
T ss_pred EEEchh
Confidence 998643
No 18
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.3e-51 Score=466.49 Aligned_cols=334 Identities=20% Similarity=0.276 Sum_probs=263.2
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc-------------CCeEEEEc
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT-------------GKVVVVIS 220 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~-------------~~~~LVvs 220 (774)
.+.+.+.+.+.|. .+||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. .+.+|||+
T Consensus 13 ~l~l~~~l~~~L~-~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~ 91 (572)
T PRK04537 13 SFDLHPALLAGLE-SAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILA 91 (572)
T ss_pred hcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEe
Confidence 3457788999998 579999999999999999999999999999999999999998742 36899999
Q ss_pred cchHHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 004098 221 PLISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVH 296 (774)
Q Consensus 221 Pt~~L~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH 296 (774)
||++|+.|+++.+.++ ++.+..++++..... +..++.+.++|+|+||++|.+++.. ...+.+..+.+|||||||
T Consensus 92 PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~-q~~~l~~~~dIiV~TP~rL~~~l~~-~~~~~l~~v~~lViDEAh 169 (572)
T PRK04537 92 PTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDK-QRELLQQGVDVIIATPGRLIDYVKQ-HKVVSLHACEICVLDEAD 169 (572)
T ss_pred CcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH-HHHHHhCCCCEEEECHHHHHHHHHh-ccccchhheeeeEecCHH
Confidence 9999999999998876 577888888876543 4455667789999999999887752 224556789999999999
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEcc--CCCCCcEEEE
Q 004098 297 CVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTS--FFRPNLRFSV 374 (774)
Q Consensus 297 ~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~--~~r~~l~~~v 374 (774)
++++|| |...+..|.. .++.. ...|+++||||++..+...+...+..+ ..+.... ....++...+
T Consensus 170 ~lld~g--f~~~i~~il~---~lp~~------~~~q~ll~SATl~~~v~~l~~~~l~~p--~~i~v~~~~~~~~~i~q~~ 236 (572)
T PRK04537 170 RMFDLG--FIKDIRFLLR---RMPER------GTRQTLLFSATLSHRVLELAYEHMNEP--EKLVVETETITAARVRQRI 236 (572)
T ss_pred HHhhcc--hHHHHHHHHH---hcccc------cCceEEEEeCCccHHHHHHHHHHhcCC--cEEEeccccccccceeEEE
Confidence 999998 7777766532 22210 157899999999998887766665422 1111111 0011111110
Q ss_pred eecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccc
Q 004098 375 KHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKE 454 (774)
Q Consensus 375 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (774)
...
T Consensus 237 ~~~----------------------------------------------------------------------------- 239 (572)
T PRK04537 237 YFP----------------------------------------------------------------------------- 239 (572)
T ss_pred Eec-----------------------------------------------------------------------------
Confidence 000
Q ss_pred hhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHh
Q 004098 455 MSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG 534 (774)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~ 534 (774)
....+...++.++.. ....++||||+|+..++.|++.|..
T Consensus 240 ---------------------------------------~~~~k~~~L~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~~ 279 (572)
T PRK04537 240 ---------------------------------------ADEEKQTLLLGLLSR-SEGARTMVFVNTKAFVERVARTLER 279 (572)
T ss_pred ---------------------------------------CHHHHHHHHHHHHhc-ccCCcEEEEeCCHHHHHHHHHHHHH
Confidence 000112222222222 2456899999999999999999999
Q ss_pred CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEE
Q 004098 535 FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL 614 (774)
Q Consensus 535 ~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il 614 (774)
.++.+..|||+|++.+|..++++|++|+++|||||+++++|||+|+|++|||||+|.++++|+||+|||||.|..|.|++
T Consensus 280 ~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~ 359 (572)
T PRK04537 280 HGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAIS 359 (572)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCC
Q 004098 615 YANLSS 620 (774)
Q Consensus 615 ~~~~~~ 620 (774)
|+...+
T Consensus 360 ~~~~~~ 365 (572)
T PRK04537 360 FACERY 365 (572)
T ss_pred EecHHH
Confidence 986543
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=8.2e-51 Score=459.49 Aligned_cols=329 Identities=18% Similarity=0.217 Sum_probs=261.4
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc------CCeEEEEccchHHHHH
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLISLMHD 228 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~------~~~~LVvsPt~~L~~q 228 (774)
..+.+.+.+.|. .+||..|+|+|.+||+.+++|+|++++||||+|||++|++|++.. ...+|||+||++|+.|
T Consensus 9 l~l~~~l~~~l~-~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q 87 (460)
T PRK11776 9 LPLPPALLANLN-ELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQ 87 (460)
T ss_pred cCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHH
Confidence 357778888887 579999999999999999999999999999999999999999853 3479999999999999
Q ss_pred HHHHHHhc-----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCC
Q 004098 229 QCSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303 (774)
Q Consensus 229 q~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~ 303 (774)
+.+.++.+ ++.+..++++.+.... ...+...++|+|+||++|.+++. .+.+.+.++++|||||||+++++|
T Consensus 88 ~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~-~~~l~~~~~IvV~Tp~rl~~~l~--~~~~~l~~l~~lViDEad~~l~~g- 163 (460)
T PRK11776 88 VAKEIRRLARFIPNIKVLTLCGGVPMGPQ-IDSLEHGAHIIVGTPGRILDHLR--KGTLDLDALNTLVLDEADRMLDMG- 163 (460)
T ss_pred HHHHHHHHHhhCCCcEEEEEECCCChHHH-HHHhcCCCCEEEEChHHHHHHHH--cCCccHHHCCEEEEECHHHHhCcC-
Confidence 99988874 5777888888776443 33445678999999999998876 455567889999999999999999
Q ss_pred CcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccC-CCCCcEEEEeecCCccc
Q 004098 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSF-FRPNLRFSVKHSKTSSR 382 (774)
Q Consensus 304 ~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~-~r~~l~~~v~~~~~~~~ 382 (774)
|...+..+. ..++...|++++|||+++.+.......+.- +..+..... ..+.+.......
T Consensus 164 -~~~~l~~i~-----------~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~--~~~i~~~~~~~~~~i~~~~~~~----- 224 (460)
T PRK11776 164 -FQDAIDAII-----------RQAPARRQTLLFSATYPEGIAAISQRFQRD--PVEVKVESTHDLPAIEQRFYEV----- 224 (460)
T ss_pred -cHHHHHHHH-----------HhCCcccEEEEEEecCcHHHHHHHHHhcCC--CEEEEECcCCCCCCeeEEEEEe-----
Confidence 888877662 233457899999999998776644444432 111111111 111111110000
Q ss_pred hhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhc
Q 004098 383 ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (774)
Q Consensus 383 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (774)
T Consensus 225 -------------------------------------------------------------------------------- 224 (460)
T PRK11776 225 -------------------------------------------------------------------------------- 224 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEe
Q 004098 463 DSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542 (774)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~ 542 (774)
....+...+..+|. .....++||||++++.++.+++.|...++.+..|
T Consensus 225 -------------------------------~~~~k~~~l~~ll~-~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~ 272 (460)
T PRK11776 225 -------------------------------SPDERLPALQRLLL-HHQPESCVVFCNTKKECQEVADALNAQGFSALAL 272 (460)
T ss_pred -------------------------------CcHHHHHHHHHHHH-hcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEE
Confidence 00012222222222 2245689999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCC
Q 004098 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619 (774)
Q Consensus 543 h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~ 619 (774)
||+|++.+|+.++++|++|+++|||||+++++|||+|+|++|||||+|.+++.|+||+|||||+|+.|.|++|+.+.
T Consensus 273 hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~ 349 (460)
T PRK11776 273 HGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPE 349 (460)
T ss_pred eCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998754
No 20
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.6e-50 Score=458.29 Aligned_cols=331 Identities=19% Similarity=0.233 Sum_probs=261.5
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc-------------CCeEEEEc
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT-------------GKVVVVIS 220 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~-------------~~~~LVvs 220 (774)
...+++.+.+.|.+ +||..|+++|.++|+.+++|+|+|+.+|||||||++|++|++.. .+++|||+
T Consensus 91 ~~~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~ 169 (475)
T PRK01297 91 DFNLAPELMHAIHD-LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIA 169 (475)
T ss_pred HCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEe
Confidence 45678899999984 79999999999999999999999999999999999999998742 46899999
Q ss_pred cchHHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 004098 221 PLISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVH 296 (774)
Q Consensus 221 Pt~~L~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH 296 (774)
||++|+.|+.+.+..+ ++.+..+.++.+.......+..+.++|+|+||++|..++. .....+.++++|||||||
T Consensus 170 PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~--~~~~~l~~l~~lViDEah 247 (475)
T PRK01297 170 PTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQ--RGEVHLDMVEVMVLDEAD 247 (475)
T ss_pred CcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHH--cCCcccccCceEEechHH
Confidence 9999999999988875 6788888888766555556666778999999999987665 344557889999999999
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEE-cc--CCCCCcEEE
Q 004098 297 CVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVL-TS--FFRPNLRFS 373 (774)
Q Consensus 297 ~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~-~~--~~r~~l~~~ 373 (774)
++.+++ |.+.+.++... ++. ....|++++|||.+..+...+..++.. +..+. .. ...+++...
T Consensus 248 ~l~~~~--~~~~l~~i~~~---~~~------~~~~q~i~~SAT~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~ 313 (475)
T PRK01297 248 RMLDMG--FIPQVRQIIRQ---TPR------KEERQTLLFSATFTDDVMNLAKQWTTD---PAIVEIEPENVASDTVEQH 313 (475)
T ss_pred HHHhcc--cHHHHHHHHHh---CCC------CCCceEEEEEeecCHHHHHHHHHhccC---CEEEEeccCcCCCCcccEE
Confidence 999988 88877776432 221 115689999999988777655544432 11111 00 000111100
Q ss_pred EeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCcc
Q 004098 374 VKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGK 453 (774)
Q Consensus 374 v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (774)
+...
T Consensus 314 ~~~~---------------------------------------------------------------------------- 317 (475)
T PRK01297 314 VYAV---------------------------------------------------------------------------- 317 (475)
T ss_pred EEEe----------------------------------------------------------------------------
Confidence 0000
Q ss_pred chhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHH
Q 004098 454 EMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLC 533 (774)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~ 533 (774)
....+...+..++. .....++||||++++.++.+++.|.
T Consensus 318 ----------------------------------------~~~~k~~~l~~ll~-~~~~~~~IVF~~s~~~~~~l~~~L~ 356 (475)
T PRK01297 318 ----------------------------------------AGSDKYKLLYNLVT-QNPWERVMVFANRKDEVRRIEERLV 356 (475)
T ss_pred ----------------------------------------cchhHHHHHHHHHH-hcCCCeEEEEeCCHHHHHHHHHHHH
Confidence 00011111222222 2244689999999999999999999
Q ss_pred hCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEE
Q 004098 534 GFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCV 613 (774)
Q Consensus 534 ~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~i 613 (774)
..++.+..+||++++++|.++++.|++|+++|||||+++++|||+|+|++||+||+|.|+.+|+||+|||||.|+.|.++
T Consensus 357 ~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i 436 (475)
T PRK01297 357 KDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSI 436 (475)
T ss_pred HcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeC
Q 004098 614 LYANL 618 (774)
Q Consensus 614 l~~~~ 618 (774)
+|++.
T Consensus 437 ~~~~~ 441 (475)
T PRK01297 437 SFAGE 441 (475)
T ss_pred EEecH
Confidence 99863
No 21
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.8e-50 Score=465.06 Aligned_cols=329 Identities=21% Similarity=0.318 Sum_probs=262.6
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc------cCCeEEEEccchHHHHHH
Q 004098 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQ 229 (774)
Q Consensus 156 ~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~------~~~~~LVvsPt~~L~~qq 229 (774)
.+.+.+.+.|. .+||..|+|+|.++|+.+++|+|+|+.||||+|||++|++|++. ..+.+|||+||++|+.|+
T Consensus 12 ~L~~~ll~al~-~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv 90 (629)
T PRK11634 12 GLKAPILEALN-DLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQV 90 (629)
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHH
Confidence 46778888998 57999999999999999999999999999999999999999874 356899999999999999
Q ss_pred HHHHHhc-----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCC
Q 004098 230 CSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (774)
Q Consensus 230 ~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~ 304 (774)
.+.+.++ ++.++.++++..... +...+...++|+|+||++|.+++. .+.+.+.++.+|||||||+|++||
T Consensus 91 ~~~l~~~~~~~~~i~v~~~~gG~~~~~-q~~~l~~~~~IVVgTPgrl~d~l~--r~~l~l~~l~~lVlDEAd~ml~~g-- 165 (629)
T PRK11634 91 AEAMTDFSKHMRGVNVVALYGGQRYDV-QLRALRQGPQIVVGTPGRLLDHLK--RGTLDLSKLSGLVLDEADEMLRMG-- 165 (629)
T ss_pred HHHHHHHHhhcCCceEEEEECCcCHHH-HHHHhcCCCCEEEECHHHHHHHHH--cCCcchhhceEEEeccHHHHhhcc--
Confidence 9888764 678888888876644 334455678999999999988776 555677889999999999999999
Q ss_pred cHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEc--cCCCCCcEEEEeecCCccc
Q 004098 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT--SFFRPNLRFSVKHSKTSSR 382 (774)
Q Consensus 305 fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~--~~~r~~l~~~v~~~~~~~~ 382 (774)
|..++..+ +..++...|+++||||++..+.......+.-+ ..+... ....+++.......
T Consensus 166 f~~di~~I-----------l~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~--~~i~i~~~~~~~~~i~q~~~~v----- 227 (629)
T PRK11634 166 FIEDVETI-----------MAQIPEGHQTALFSATMPEAIRRITRRFMKEP--QEVRIQSSVTTRPDISQSYWTV----- 227 (629)
T ss_pred cHHHHHHH-----------HHhCCCCCeEEEEEccCChhHHHHHHHHcCCC--eEEEccCccccCCceEEEEEEe-----
Confidence 87777666 22344578999999999887766444444321 111111 11111111111000
Q ss_pred hhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhc
Q 004098 383 ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (774)
Q Consensus 383 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (774)
T Consensus 228 -------------------------------------------------------------------------------- 227 (629)
T PRK11634 228 -------------------------------------------------------------------------------- 227 (629)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEe
Q 004098 463 DSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542 (774)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~ 542 (774)
....+...+..+|.. ....++||||+|+..++.+++.|...|+.+..+
T Consensus 228 -------------------------------~~~~k~~~L~~~L~~-~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~l 275 (629)
T PRK11634 228 -------------------------------WGMRKNEALVRFLEA-EDFDAAIIFVRTKNATLEVAEALERNGYNSAAL 275 (629)
T ss_pred -------------------------------chhhHHHHHHHHHHh-cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEe
Confidence 001122222222222 134689999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 543 h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
||+|++.+|.+++++|++|+++|||||+++++|||+|+|++|||||+|.++++|+||+|||||.|+.|.|++|+...+
T Consensus 276 hgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e 353 (629)
T PRK11634 276 NGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 (629)
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997654
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.2e-50 Score=451.87 Aligned_cols=330 Identities=19% Similarity=0.289 Sum_probs=261.5
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc----------CCeEEEEccchH
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT----------GKVVVVISPLIS 224 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~----------~~~~LVvsPt~~ 224 (774)
..+.+.+.+.|. .+||..|+++|.++|+.+++|+|++++||||+|||++|++|++.. .+++|||+||++
T Consensus 6 l~l~~~l~~~l~-~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~e 84 (434)
T PRK11192 6 LELDESLLEALQ-DKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRE 84 (434)
T ss_pred cCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHH
Confidence 456778888998 579999999999999999999999999999999999999999842 368999999999
Q ss_pred HHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc
Q 004098 225 LMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (774)
Q Consensus 225 L~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~ 300 (774)
|+.|+.+.+..+ ++.+..++++..... +...+.+.++|+|+||++|.+++. .+.+...++++|||||||++++
T Consensus 85 La~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~-~~~~l~~~~~IlV~Tp~rl~~~~~--~~~~~~~~v~~lViDEah~~l~ 161 (434)
T PRK11192 85 LAMQVADQARELAKHTHLDIATITGGVAYMN-HAEVFSENQDIVVATPGRLLQYIK--EENFDCRAVETLILDEADRMLD 161 (434)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEECCCCHHH-HHHHhcCCCCEEEEChHHHHHHHH--cCCcCcccCCEEEEECHHHHhC
Confidence 999998887764 678888888876644 344556778999999999998776 4555678899999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEcc--CCCCCcEEEEeecC
Q 004098 301 WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTS--FFRPNLRFSVKHSK 378 (774)
Q Consensus 301 ~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~--~~r~~l~~~v~~~~ 378 (774)
|| |...+..+... ++...|+++||||++.....++...+... ...+.... ..+.++.......
T Consensus 162 ~~--~~~~~~~i~~~-----------~~~~~q~~~~SAT~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~i~~~~~~~- 226 (434)
T PRK11192 162 MG--FAQDIETIAAE-----------TRWRKQTLLFSATLEGDAVQDFAERLLND-PVEVEAEPSRRERKKIHQWYYRA- 226 (434)
T ss_pred CC--cHHHHHHHHHh-----------CccccEEEEEEeecCHHHHHHHHHHHccC-CEEEEecCCcccccCceEEEEEe-
Confidence 99 88888877332 22367899999999877677776665321 11111110 0011111110000
Q ss_pred CccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhh
Q 004098 379 TSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVE 458 (774)
Q Consensus 379 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (774)
T Consensus 227 -------------------------------------------------------------------------------- 226 (434)
T PRK11192 227 -------------------------------------------------------------------------------- 226 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCc
Q 004098 459 FLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVK 538 (774)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~ 538 (774)
+.......++..+.......++||||+++..++.++..|...++.
T Consensus 227 -----------------------------------~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~ 271 (434)
T PRK11192 227 -----------------------------------DDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGIN 271 (434)
T ss_pred -----------------------------------CCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCC
Confidence 000011112222222224568999999999999999999999999
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeC
Q 004098 539 AAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL 618 (774)
Q Consensus 539 ~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~ 618 (774)
+..+||+|++.+|..++++|++|+++|||||+++++|||+|+|++|||||+|.+.+.|+||+|||||+|..|.+++|++.
T Consensus 272 ~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~ 351 (434)
T PRK11192 272 CCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEA 351 (434)
T ss_pred EEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999853
No 23
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=4.6e-51 Score=426.00 Aligned_cols=341 Identities=17% Similarity=0.243 Sum_probs=277.5
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc----------cCCeEEEEccc
Q 004098 153 IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----------TGKVVVVISPL 222 (774)
Q Consensus 153 ~~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~----------~~~~~LVvsPt 222 (774)
....+++...++++ .+||.+++++|...|+.++.|+|+++.|.||+|||++|++|++. .+-.+|||+||
T Consensus 85 ~~~~LS~~t~kAi~-~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PT 163 (543)
T KOG0342|consen 85 EEGSLSPLTLKAIK-EMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPT 163 (543)
T ss_pred hccccCHHHHHHHH-hcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEeccc
Confidence 35677788888888 67999999999999999999999999999999999999999974 24579999999
Q ss_pred hHHHHHHHHHHHhc-----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccc
Q 004098 223 ISLMHDQCSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHC 297 (774)
Q Consensus 223 ~~L~~qq~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~ 297 (774)
|+|+.|.+.+++++ ++.+..+.||......+.++.. +++|+|+||++|.+.+++..+++ ...+.++||||||+
T Consensus 164 RELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k-~~niliATPGRLlDHlqNt~~f~-~r~~k~lvlDEADr 241 (543)
T KOG0342|consen 164 RELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVK-GCNILIATPGRLLDHLQNTSGFL-FRNLKCLVLDEADR 241 (543)
T ss_pred HHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhc-cccEEEeCCchHHhHhhcCCcch-hhccceeEeecchh
Confidence 99999999998873 6777778877766554444444 89999999999999988654433 45679999999999
Q ss_pred cccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeec
Q 004098 298 VSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHS 377 (774)
Q Consensus 298 l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~ 377 (774)
+++.| |+.++.+|.. .+|..+|.++||||.+.+|.+...-.|+- ..++..+...
T Consensus 242 lLd~G--F~~di~~Ii~-----------~lpk~rqt~LFSAT~~~kV~~l~~~~L~~-------------d~~~v~~~d~ 295 (543)
T KOG0342|consen 242 LLDIG--FEEDVEQIIK-----------ILPKQRQTLLFSATQPSKVKDLARGALKR-------------DPVFVNVDDG 295 (543)
T ss_pred hhhcc--cHHHHHHHHH-----------hccccceeeEeeCCCcHHHHHHHHHhhcC-------------CceEeecCCC
Confidence 99999 9999999943 44558999999999999998866555542 2222222221
Q ss_pred CCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhh
Q 004098 378 KTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSV 457 (774)
Q Consensus 378 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (774)
.....
T Consensus 296 ~~~~T--------------------------------------------------------------------------- 300 (543)
T KOG0342|consen 296 GERET--------------------------------------------------------------------------- 300 (543)
T ss_pred CCcch---------------------------------------------------------------------------
Confidence 11000
Q ss_pred hhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCC
Q 004098 458 EFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGV 537 (774)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~ 537 (774)
.+.++|-++. .........++.+|++.....++||||+|...+..+++.|+...+
T Consensus 301 ----he~l~Qgyvv---------------------~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dl 355 (543)
T KOG0342|consen 301 ----HERLEQGYVV---------------------APSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDL 355 (543)
T ss_pred ----hhcccceEEe---------------------ccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCC
Confidence 0001111111 111223455667777776668999999999999999999999999
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEee
Q 004098 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617 (774)
Q Consensus 538 ~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~ 617 (774)
.|..+||+++|..|..+..+|++.+.-|||||++++||+|+|+|++||+||+|.++++|+||+||+||.|..|.++++..
T Consensus 356 pv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~ 435 (543)
T KOG0342|consen 356 PVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLA 435 (543)
T ss_pred chhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCC
Q 004098 618 LSSMP 622 (774)
Q Consensus 618 ~~~~~ 622 (774)
+.+..
T Consensus 436 p~El~ 440 (543)
T KOG0342|consen 436 PWELG 440 (543)
T ss_pred hhHHH
Confidence 77654
No 24
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-50 Score=431.25 Aligned_cols=335 Identities=19% Similarity=0.262 Sum_probs=268.5
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc----------------CCeEE
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT----------------GKVVV 217 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~----------------~~~~L 217 (774)
...+.+.+...++ ..||..|+|+|+.+||.+..|+|++++|+||+|||.+|++|++.. .+.+|
T Consensus 78 ~~~l~~~l~~ni~-~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~l 156 (482)
T KOG0335|consen 78 EAILGEALAGNIK-RSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRAL 156 (482)
T ss_pred ccchhHHHhhccc-cccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceE
Confidence 4555555666665 569999999999999999999999999999999999999999831 37999
Q ss_pred EEccchHHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEe
Q 004098 218 VISPLISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAID 293 (774)
Q Consensus 218 VvsPt~~L~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVID 293 (774)
|++|||+|+.|.+++.+++ ++..+.++++.+... +......+++|+|+||++|.++++ .+.+.+..+++||||
T Consensus 157 IlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~-q~~~~~~gcdIlvaTpGrL~d~~e--~g~i~l~~~k~~vLD 233 (482)
T KOG0335|consen 157 ILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGA-QLRFIKRGCDILVATPGRLKDLIE--RGKISLDNCKFLVLD 233 (482)
T ss_pred EEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhh-hhhhhccCccEEEecCchhhhhhh--cceeehhhCcEEEec
Confidence 9999999999999999996 577888888854433 344455679999999999999998 788888999999999
Q ss_pred ccccccc-CCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCC-CCceEEEccCCCCCcE
Q 004098 294 EVHCVSK-WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMS-KGTKFVLTSFFRPNLR 371 (774)
Q Consensus 294 EaH~l~~-~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~-~~~~~~~~~~~r~~l~ 371 (774)
|||+|++ +| |.|++++|.......+. ...|.++||||.+..+...+...|.-. --..+..-.....|+.
T Consensus 234 EADrMlD~mg--F~p~Ir~iv~~~~~~~~-------~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~ 304 (482)
T KOG0335|consen 234 EADRMLDEMG--FEPQIRKIVEQLGMPPK-------NNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENIT 304 (482)
T ss_pred chHHhhhhcc--ccccHHHHhcccCCCCc-------cceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccce
Confidence 9999999 89 99999999554333221 268999999999998888554444210 0000001111122222
Q ss_pred EEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCC
Q 004098 372 FSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPM 451 (774)
Q Consensus 372 ~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (774)
-.+..
T Consensus 305 q~i~~--------------------------------------------------------------------------- 309 (482)
T KOG0335|consen 305 QKILF--------------------------------------------------------------------------- 309 (482)
T ss_pred eEeee---------------------------------------------------------------------------
Confidence 22211
Q ss_pred ccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCC---CC-----CcEEEEeCchH
Q 004098 452 GKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL---ED-----GLTIIYVPTRK 523 (774)
Q Consensus 452 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~---~~-----~~~IIF~~sr~ 523 (774)
.....|...++++|.... .. ..++|||.|++
T Consensus 310 -----------------------------------------V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~ 348 (482)
T KOG0335|consen 310 -----------------------------------------VNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKR 348 (482)
T ss_pred -----------------------------------------ecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccc
Confidence 112233334444443322 12 37999999999
Q ss_pred HHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhcc
Q 004098 524 ETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRA 603 (774)
Q Consensus 524 ~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRa 603 (774)
.++.++.+|...++++..+||..++.+|.+.++.|++|++.+||||++++||||+|+|++||+||+|.+..+|+|||||+
T Consensus 349 ~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRT 428 (482)
T KOG0335|consen 349 GADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRT 428 (482)
T ss_pred hhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceEEEEee
Q 004098 604 GRDGHLADCVLYAN 617 (774)
Q Consensus 604 GR~G~~g~~il~~~ 617 (774)
||+|..|.++.|++
T Consensus 429 GR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 429 GRVGNGGRATSFFN 442 (482)
T ss_pred ccCCCCceeEEEec
Confidence 99999999999998
No 25
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.7e-50 Score=413.65 Aligned_cols=340 Identities=19% Similarity=0.267 Sum_probs=277.4
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---------cCC--eEEEEcc
Q 004098 153 IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---------TGK--VVVVISP 221 (774)
Q Consensus 153 ~~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---------~~~--~~LVvsP 221 (774)
...++.+++.++|. .+||..+||+|..+||.++.++|++|-++||||||++|++|++. .++ -+|||+|
T Consensus 9 l~~~L~~~l~~~l~-~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsP 87 (567)
T KOG0345|consen 9 LAPPLSPWLLEALD-ESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISP 87 (567)
T ss_pred cCCCccHHHHHHHH-hcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecC
Confidence 34567889999998 67999999999999999999999999999999999999999984 123 7999999
Q ss_pred chHHHHHHHHHHHhc-----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 004098 222 LISLMHDQCSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVH 296 (774)
Q Consensus 222 t~~L~~qq~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH 296 (774)
||+|+.|+...+..| .+.+.++.||.........+...++.|+|+||++|.+++..-...++...+.++|+||||
T Consensus 88 TRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD 167 (567)
T KOG0345|consen 88 TRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD 167 (567)
T ss_pred cHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH
Confidence 999999999998775 577888888887777677788888999999999999998854455567789999999999
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEee
Q 004098 297 CVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376 (774)
Q Consensus 297 ~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~ 376 (774)
+++++| |...+..| +..+|..+.+=+||||.+.++.+....-| |.++...|..
T Consensus 168 rLldmg--Fe~~~n~I-----------Ls~LPKQRRTGLFSATq~~~v~dL~raGL--------------RNpv~V~V~~ 220 (567)
T KOG0345|consen 168 RLLDMG--FEASVNTI-----------LSFLPKQRRTGLFSATQTQEVEDLARAGL--------------RNPVRVSVKE 220 (567)
T ss_pred hHhccc--HHHHHHHH-----------HHhcccccccccccchhhHHHHHHHHhhc--------------cCceeeeecc
Confidence 999999 99999888 45566688899999999998877444433 3333333332
Q ss_pred cCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchh
Q 004098 377 SKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMS 456 (774)
Q Consensus 377 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (774)
...... ...+.
T Consensus 221 k~~~~t---------------------------------------------------------------------PS~L~ 231 (567)
T KOG0345|consen 221 KSKSAT---------------------------------------------------------------------PSSLA 231 (567)
T ss_pred cccccC---------------------------------------------------------------------chhhc
Confidence 111000 00000
Q ss_pred hhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhC-
Q 004098 457 VEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF- 535 (774)
Q Consensus 457 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~- 535 (774)
.+|+ .+.+..|...++++|... ...++|||.+|...++.....|...
T Consensus 232 ~~Y~-------------------------------v~~a~eK~~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l 279 (567)
T KOG0345|consen 232 LEYL-------------------------------VCEADEKLSQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLL 279 (567)
T ss_pred ceee-------------------------------EecHHHHHHHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHh
Confidence 1111 112334555566666553 5679999999999999999988764
Q ss_pred -CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEE
Q 004098 536 -GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVL 614 (774)
Q Consensus 536 -g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il 614 (774)
...+..+||.|++.+|..+++.|....-.||+|||+++||||+|+|++||+||+|.++..|+||+|||||.|+.|.+++
T Consensus 280 ~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aiv 359 (567)
T KOG0345|consen 280 KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIV 359 (567)
T ss_pred CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEE
Confidence 6789999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCC
Q 004098 615 YANLSSM 621 (774)
Q Consensus 615 ~~~~~~~ 621 (774)
|..+.+.
T Consensus 360 fl~p~E~ 366 (567)
T KOG0345|consen 360 FLNPREE 366 (567)
T ss_pred EecccHH
Confidence 9987543
No 26
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.7e-51 Score=423.55 Aligned_cols=338 Identities=22% Similarity=0.294 Sum_probs=268.0
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc---------CCeEEEEccchH
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT---------GKVVVVISPLIS 224 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~---------~~~~LVvsPt~~ 224 (774)
.-+++..+.+.+. .+||..|+|+|...||.+|-|+|++.+|.||+|||.+|+||+|.+ .-++||++|||+
T Consensus 185 ~mNLSRPlLka~~-~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRE 263 (691)
T KOG0338|consen 185 SMNLSRPLLKACS-TLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRE 263 (691)
T ss_pred hcccchHHHHHHH-hcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHH
Confidence 4566777888887 789999999999999999999999999999999999999999853 348999999999
Q ss_pred HHHHHHHHHHh---c-CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc
Q 004098 225 LMHDQCSKLSK---H-GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (774)
Q Consensus 225 L~~qq~~~l~~---~-gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~ 300 (774)
|+.|.....++ | .|.+++..||.+-.. +...++..++|+|+||++|++++.+ ...+++.+|..+|+||||+|++
T Consensus 264 LaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~-QE~~LRs~PDIVIATPGRlIDHlrN-s~sf~ldsiEVLvlDEADRMLe 341 (691)
T KOG0338|consen 264 LAIQVHSVTKQLAQFTDITVGLAVGGLDLKA-QEAVLRSRPDIVIATPGRLIDHLRN-SPSFNLDSIEVLVLDEADRMLE 341 (691)
T ss_pred HHHHHHHHHHHHHhhccceeeeeecCccHHH-HHHHHhhCCCEEEecchhHHHHhcc-CCCccccceeEEEechHHHHHH
Confidence 98877766665 3 588888888877654 4556677799999999999988774 2234678899999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCc
Q 004098 301 WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380 (774)
Q Consensus 301 ~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~ 380 (774)
.| |...+..|..+ +|.++|.++||||++.++.+.+.-+| .++..++.....+-..
T Consensus 342 eg--FademnEii~l-----------cpk~RQTmLFSATMteeVkdL~slSL--~kPvrifvd~~~~~a~---------- 396 (691)
T KOG0338|consen 342 EG--FADEMNEIIRL-----------CPKNRQTMLFSATMTEEVKDLASLSL--NKPVRIFVDPNKDTAP---------- 396 (691)
T ss_pred HH--HHHHHHHHHHh-----------ccccccceeehhhhHHHHHHHHHhhc--CCCeEEEeCCccccch----------
Confidence 99 99999998554 34589999999999999887554444 3444444432111100
Q ss_pred cchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhh
Q 004098 381 SRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFL 460 (774)
Q Consensus 381 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 460 (774)
.| ..+|+
T Consensus 397 ----------~L---------------------------------------------------------------tQEFi 403 (691)
T KOG0338|consen 397 ----------KL---------------------------------------------------------------TQEFI 403 (691)
T ss_pred ----------hh---------------------------------------------------------------hHHHh
Confidence 01 11122
Q ss_pred hcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceE
Q 004098 461 ENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAA 540 (774)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~ 540 (774)
.-. + .....+...+..++.+. ...++|||+.|++.|..+.-.|--.|+++.
T Consensus 404 RIR----------------~------------~re~dRea~l~~l~~rt-f~~~~ivFv~tKk~AHRl~IllGLlgl~ag 454 (691)
T KOG0338|consen 404 RIR----------------P------------KREGDREAMLASLITRT-FQDRTIVFVRTKKQAHRLRILLGLLGLKAG 454 (691)
T ss_pred eec----------------c------------ccccccHHHHHHHHHHh-cccceEEEEehHHHHHHHHHHHHHhhchhh
Confidence 100 0 00001111122222222 356899999999999999999988999999
Q ss_pred EecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 541 ~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
-+||.|+|.+|...++.|++++++|||||++++|||||+.|..||||++|.+++.|+||+||++|+|+.|.+++|+..++
T Consensus 455 ElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~d 534 (691)
T KOG0338|consen 455 ELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESD 534 (691)
T ss_pred hhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 004098 621 M 621 (774)
Q Consensus 621 ~ 621 (774)
-
T Consensus 535 R 535 (691)
T KOG0338|consen 535 R 535 (691)
T ss_pred H
Confidence 3
No 27
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.7e-50 Score=388.63 Aligned_cols=336 Identities=18% Similarity=0.283 Sum_probs=267.8
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc------cCCeEEEEccchHHHH
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMH 227 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~------~~~~~LVvsPt~~L~~ 227 (774)
.-.+.+++...+- .+||.+|..+|+.||+.+++|+|+++.+..|+|||.+|-+..+. +.-.+||++|||+|+.
T Consensus 31 ~Mgl~edlLrgiY-~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~ 109 (400)
T KOG0328|consen 31 DMGLKEDLLRGIY-AYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAV 109 (400)
T ss_pred hcCchHHHHHHHH-HhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHH
Confidence 3456667777776 56999999999999999999999999999999999998877764 4568999999999999
Q ss_pred HHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCC
Q 004098 228 DQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303 (774)
Q Consensus 228 qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~ 303 (774)
|..+.+..+ ++.+....||.+-.+..+.+ .-+.+++.+||+++.+++. .+.+..+.+.++|+||||.|++.|
T Consensus 110 Qi~~vi~alg~~mnvq~hacigg~n~gedikkl-d~G~hvVsGtPGrv~dmik--r~~L~tr~vkmlVLDEaDemL~kg- 185 (400)
T KOG0328|consen 110 QIQKVILALGDYMNVQCHACIGGKNLGEDIKKL-DYGQHVVSGTPGRVLDMIK--RRSLRTRAVKMLVLDEADEMLNKG- 185 (400)
T ss_pred HHHHHHHHhcccccceEEEEecCCccchhhhhh-cccceEeeCCCchHHHHHH--hccccccceeEEEeccHHHHHHhh-
Confidence 999888876 57777777776644333333 3567999999999999998 777788899999999999999888
Q ss_pred CcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccch
Q 004098 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383 (774)
Q Consensus 304 ~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~ 383 (774)
|....-.+ ...+|++.|++++|||++.++.+-..+.+. ++++.-|.......
T Consensus 186 -fk~Qiydi-----------yr~lp~~~Qvv~~SATlp~eilemt~kfmt--------------dpvrilvkrdeltl-- 237 (400)
T KOG0328|consen 186 -FKEQIYDI-----------YRYLPPGAQVVLVSATLPHEILEMTEKFMT--------------DPVRILVKRDELTL-- 237 (400)
T ss_pred -HHHHHHHH-----------HHhCCCCceEEEEeccCcHHHHHHHHHhcC--------------CceeEEEecCCCch--
Confidence 88777666 345677999999999999999886665552 33333333211110
Q ss_pred hhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcC
Q 004098 384 SYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND 463 (774)
Q Consensus 384 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (774)
+.++ .|....
T Consensus 238 ---EgIK-------------------------------------------------------------------qf~v~v 247 (400)
T KOG0328|consen 238 ---EGIK-------------------------------------------------------------------QFFVAV 247 (400)
T ss_pred ---hhhh-------------------------------------------------------------------hheeee
Confidence 0000 011111
Q ss_pred CCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEec
Q 004098 464 SVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYN 543 (774)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h 543 (774)
..+.| +...+..|...+.-..++|||+|++.++.|.+.|++.++.+.+.|
T Consensus 248 e~Eew------------------------------KfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmH 297 (400)
T KOG0328|consen 248 EKEEW------------------------------KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMH 297 (400)
T ss_pred chhhh------------------------------hHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeecc
Confidence 11111 112233333444566899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCCC
Q 004098 544 ASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622 (774)
Q Consensus 544 ~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~ 622 (774)
|+|++++|+.++++|++|+.+||++|++.+||||+|.|++|||||+|.+.+.|+|||||.||.|+.|.++-|+...|+.
T Consensus 298 GDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~ 376 (400)
T KOG0328|consen 298 GDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLR 376 (400)
T ss_pred CCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998755554
No 28
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-49 Score=416.56 Aligned_cols=374 Identities=20% Similarity=0.253 Sum_probs=271.3
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc------------cCCeEEEEcc
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------------TGKVVVVISP 221 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~------------~~~~~LVvsP 221 (774)
...++..+...|...+++..||.+|.++||.+|+|+|++|.++|||||||+|++|++. .|..+|||+|
T Consensus 140 ~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivP 219 (708)
T KOG0348|consen 140 SLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVP 219 (708)
T ss_pred hcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEec
Confidence 4567888999999999999999999999999999999999999999999999999985 2789999999
Q ss_pred chHHHHHHHHHHHhcC-----CcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 004098 222 LISLMHDQCSKLSKHG-----VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVH 296 (774)
Q Consensus 222 t~~L~~qq~~~l~~~g-----i~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH 296 (774)
||+|+.|.++.+.++- |-.+.+.||... ..++..++++++|+|+||++|++.+.+ ...+...++++||+||||
T Consensus 220 TREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkk-KSEKARLRKGiNILIgTPGRLvDHLkn-T~~i~~s~LRwlVlDEaD 297 (708)
T KOG0348|consen 220 TRELALQIYETVQKLLKPFHWIVPGVLMGGEKK-KSEKARLRKGINILIGTPGRLVDHLKN-TKSIKFSRLRWLVLDEAD 297 (708)
T ss_pred hHHHHHHHHHHHHHHhcCceEEeeceeeccccc-ccHHHHHhcCceEEEcCchHHHHHHhc-cchheeeeeeEEEecchh
Confidence 9999999999999862 333445555444 345666778899999999999998875 445567889999999999
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhc--ccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEE
Q 004098 297 CVSKWGHDFRPDYRRLSVLRENFG--ANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSV 374 (774)
Q Consensus 297 ~l~~~g~~fr~~~~~l~~l~~~~~--~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v 374 (774)
++++.| |..++..|.......+ ......+|+..|.++||||++..|.... .+.+. ++..+. .+.......
T Consensus 298 rlleLG--fekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa--~~sLk-Dpv~I~--ld~s~~~~~- 369 (708)
T KOG0348|consen 298 RLLELG--FEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLA--DLSLK-DPVYIS--LDKSHSQLN- 369 (708)
T ss_pred HHHhcc--chhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHh--hcccc-Cceeee--ccchhhhcC-
Confidence 999999 9999999977774422 2234456767889999999998887633 33333 222222 111000000
Q ss_pred eecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccc
Q 004098 375 KHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKE 454 (774)
Q Consensus 375 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (774)
+.. +.+.. + .+..+...+ +....|+.
T Consensus 370 -p~~--------~a~~e-----------------v--------~~~~~~~~l--~~~~iPeq------------------ 395 (708)
T KOG0348|consen 370 -PKD--------KAVQE-----------------V--------DDGPAGDKL--DSFAIPEQ------------------ 395 (708)
T ss_pred -cch--------hhhhh-----------------c--------CCccccccc--ccccCcHH------------------
Confidence 000 00000 0 000000000 00000000
Q ss_pred hhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccC---CCCCCcEEEEeCchHHHHHHHHH
Q 004098 455 MSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQE---PLEDGLTIIYVPTRKETLSIAKY 531 (774)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~---~~~~~~~IIF~~sr~~~~~l~~~ 531 (774)
+...|+ ....--....+..+|.. .....++|||..+.+.++.-++.
T Consensus 396 L~qry~-------------------------------vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~l 444 (708)
T KOG0348|consen 396 LLQRYT-------------------------------VVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSL 444 (708)
T ss_pred hhhceE-------------------------------ecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHH
Confidence 000000 00000111122222222 22456899999999999999998
Q ss_pred HHh----------------------CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCC
Q 004098 532 LCG----------------------FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW 589 (774)
Q Consensus 532 L~~----------------------~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~ 589 (774)
|.+ .+.++..+||+|+|++|..+++.|...+-.||+|||+++||||+|+|++||.||.
T Consensus 445 f~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~ 524 (708)
T KOG0348|consen 445 FSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDP 524 (708)
T ss_pred HHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCC
Confidence 865 2356889999999999999999999988889999999999999999999999999
Q ss_pred CCCHHHHHHHhhccccCCCcceEEEEeeCCCCC
Q 004098 590 PQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622 (774)
Q Consensus 590 p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~ 622 (774)
|.+.++|+||+||++|+|..|.+++|.-+.+.+
T Consensus 525 P~s~adylHRvGRTARaG~kG~alLfL~P~Eae 557 (708)
T KOG0348|consen 525 PFSTADYLHRVGRTARAGEKGEALLFLLPSEAE 557 (708)
T ss_pred CCCHHHHHHHhhhhhhccCCCceEEEecccHHH
Confidence 999999999999999999999999998877655
No 29
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-49 Score=414.38 Aligned_cols=364 Identities=21% Similarity=0.276 Sum_probs=270.2
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC-CCEEEEecCCCchHHHHHHhhhcc-------------------C
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQIPALLT-------------------G 213 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g-~d~lv~apTGsGKTl~~~lpal~~-------------------~ 213 (774)
.+.++.++..+|. ..||..|+++|..+||+++.| .|+|..|.|||||||+|.+|++.+ .
T Consensus 185 ~l~lp~~iL~aL~-~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k 263 (731)
T KOG0347|consen 185 NLFLPMEILRALS-NLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVK 263 (731)
T ss_pred cCCCCHHHHHHHH-hcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCc
Confidence 4578889999998 679999999999999999999 799999999999999999999861 3
Q ss_pred CeEEEEccchHHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHH-HHHhcCcc
Q 004098 214 KVVVVISPLISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR-LAESRGIA 288 (774)
Q Consensus 214 ~~~LVvsPt~~L~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~-~~~~~~i~ 288 (774)
+.+||++|||+|+.|+.+.+... +|++..+.||..... ++++++..++|+|+||++|+.++..-.. +-++..+.
T Consensus 264 ~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqK-QqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vk 342 (731)
T KOG0347|consen 264 PIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQK-QQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVK 342 (731)
T ss_pred ceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHH-HHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhce
Confidence 45999999999999999999874 799999999987654 5566677899999999999999875333 44678899
Q ss_pred EEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCC
Q 004098 289 LFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP 368 (774)
Q Consensus 289 ~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~ 368 (774)
++||||||+|.+-|| |...-.-|..|.+. ...+..|.+.||||++......+.....-.
T Consensus 343 cLVlDEaDRmvekgh-F~Els~lL~~L~e~-------~~~~qrQTlVFSATlt~~~~~~~~~~~k~~------------- 401 (731)
T KOG0347|consen 343 CLVLDEADRMVEKGH-FEELSKLLKHLNEE-------QKNRQRQTLVFSATLTLVLQQPLSSSRKKK------------- 401 (731)
T ss_pred EEEEccHHHHhhhcc-HHHHHHHHHHhhhh-------hcccccceEEEEEEeehhhcChhHHhhhcc-------------
Confidence 999999999999997 65443333333311 122367999999999865444332221100
Q ss_pred CcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCC
Q 004098 369 NLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGN 448 (774)
Q Consensus 369 ~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (774)
.....+...++.++..+.-. +.. .++ +-.......+.+.+....++...
T Consensus 402 -----------~k~~~~~~kiq~Lmk~ig~~----~kp-kii----D~t~q~~ta~~l~Es~I~C~~~e----------- 450 (731)
T KOG0347|consen 402 -----------DKEDELNAKIQHLMKKIGFR----GKP-KII----DLTPQSATASTLTESLIECPPLE----------- 450 (731)
T ss_pred -----------chhhhhhHHHHHHHHHhCcc----CCC-eeE----ecCcchhHHHHHHHHhhcCCccc-----------
Confidence 00012233344444333211 111 010 00000000000111111111111
Q ss_pred CCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHH
Q 004098 449 SPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSI 528 (774)
Q Consensus 449 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l 528 (774)
-+..|-+|..+ -.|++|||||+...+..|
T Consensus 451 -------------------KD~ylyYfl~r--------------------------------yPGrTlVF~NsId~vKRL 479 (731)
T KOG0347|consen 451 -------------------KDLYLYYFLTR--------------------------------YPGRTLVFCNSIDCVKRL 479 (731)
T ss_pred -------------------cceeEEEEEee--------------------------------cCCceEEEechHHHHHHH
Confidence 11112112111 367999999999999999
Q ss_pred HHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCC
Q 004098 529 AKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGH 608 (774)
Q Consensus 529 ~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~ 608 (774)
+-+|+..++....+|+.|.|++|.+.+++|++..-.|||||++++||||||.|.+||||.+|.+.+.|+||+||++|++.
T Consensus 480 t~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~ 559 (731)
T KOG0347|consen 480 TVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANS 559 (731)
T ss_pred HHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEeeCCCCC
Q 004098 609 LADCVLYANLSSMP 622 (774)
Q Consensus 609 ~g~~il~~~~~~~~ 622 (774)
.|..++++++.+..
T Consensus 560 ~Gvsvml~~P~e~~ 573 (731)
T KOG0347|consen 560 EGVSVMLCGPQEVG 573 (731)
T ss_pred CCeEEEEeChHHhH
Confidence 99999999987754
No 30
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=6.3e-48 Score=452.38 Aligned_cols=355 Identities=22% Similarity=0.267 Sum_probs=254.7
Q ss_pred CCCCCcccCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc-----cCCeEEEE
Q 004098 145 VSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----TGKVVVVI 219 (774)
Q Consensus 145 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~-----~~~~~LVv 219 (774)
..++........+++.+.+.|+ ..||..|+++|.++|+.+++|+|+++.+|||||||+||++|++. .+.++|||
T Consensus 9 ~~~a~~~~~~~~l~~~l~~~L~-~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l 87 (742)
T TIGR03817 9 ARAGRTAPWPAWAHPDVVAALE-AAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYL 87 (742)
T ss_pred CCCcccCCCCCcCCHHHHHHHH-HcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 3333334445567888999998 56999999999999999999999999999999999999999984 35699999
Q ss_pred ccchHHHHHHHHHHHhc---CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHH-HHHHHH-HHHhcCccEEEEec
Q 004098 220 SPLISLMHDQCSKLSKH---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRL-IKPLQR-LAESRGIALFAIDE 294 (774)
Q Consensus 220 sPt~~L~~qq~~~l~~~---gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~l-l~~~~~-~~~~~~i~~iVIDE 294 (774)
+||++|++||...++++ ++.+..+.|+.+.. ++......++|+|+||++|... +....+ ...+.++++|||||
T Consensus 88 ~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~--~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDE 165 (742)
T TIGR03817 88 APTKALAADQLRAVRELTLRGVRPATYDGDTPTE--ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDE 165 (742)
T ss_pred cChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHH--HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeC
Confidence 99999999999999987 46777777666543 3344555689999999998742 221111 12367899999999
Q ss_pred cccccc-CCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCC--CcE
Q 004098 295 VHCVSK-WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP--NLR 371 (774)
Q Consensus 295 aH~l~~-~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~--~l~ 371 (774)
||++.+ +|.++...+++|..+...++ .++|++++|||.+.... .....++. + .........+ +..
T Consensus 166 ah~~~g~fg~~~~~il~rL~ri~~~~g--------~~~q~i~~SATi~n~~~-~~~~l~g~--~-~~~i~~~~~~~~~~~ 233 (742)
T TIGR03817 166 CHSYRGVFGSHVALVLRRLRRLCARYG--------ASPVFVLASATTADPAA-AASRLIGA--P-VVAVTEDGSPRGART 233 (742)
T ss_pred hhhccCccHHHHHHHHHHHHHHHHhcC--------CCCEEEEEecCCCCHHH-HHHHHcCC--C-eEEECCCCCCcCceE
Confidence 999975 34444555556655554443 36899999999987643 23333332 2 2222211111 111
Q ss_pred EEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCC
Q 004098 372 FSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPM 451 (774)
Q Consensus 372 ~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (774)
+.+...... . . . . ..+. .
T Consensus 234 ~~~~~p~~~-~---------~----~------~----------------------------------------~~~~-~- 251 (742)
T TIGR03817 234 VALWEPPLT-E---------L----T------G----------------------------------------ENGA-P- 251 (742)
T ss_pred EEEecCCcc-c---------c----c------c----------------------------------------cccc-c-
Confidence 111110000 0 0 0 0 0000 0
Q ss_pred ccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHH
Q 004098 452 GKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKY 531 (774)
Q Consensus 452 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~ 531 (774)
........+...+..++. .+.++||||+|++.++.++..
T Consensus 252 --------------------------------------~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~ 290 (742)
T TIGR03817 252 --------------------------------------VRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAI 290 (742)
T ss_pred --------------------------------------cccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHH
Confidence 000000011111222222 246899999999999999999
Q ss_pred HHhC--------CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhcc
Q 004098 532 LCGF--------GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRA 603 (774)
Q Consensus 532 L~~~--------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRa 603 (774)
|.+. +.++..|||++++++|++++++|++|++++||||+++++|||+|+|++|||||+|.++++|+||+|||
T Consensus 291 l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRa 370 (742)
T TIGR03817 291 ARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRA 370 (742)
T ss_pred HHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhcccc
Confidence 8763 67889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceEEEEee
Q 004098 604 GRDGHLADCVLYAN 617 (774)
Q Consensus 604 GR~G~~g~~il~~~ 617 (774)
||.|+.|.++++..
T Consensus 371 GR~G~~g~ai~v~~ 384 (742)
T TIGR03817 371 GRRGQGALVVLVAR 384 (742)
T ss_pred CCCCCCcEEEEEeC
Confidence 99999999999875
No 31
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=6.3e-50 Score=403.46 Aligned_cols=339 Identities=22% Similarity=0.319 Sum_probs=273.9
Q ss_pred CCCcccCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc--------------c
Q 004098 147 CPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL--------------T 212 (774)
Q Consensus 147 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~--------------~ 212 (774)
||......-.|+..+...|++ -|+..|+|+|.+.+|.+|+|||+|.+|-||||||++|.||++. .
T Consensus 167 PPIksF~eMKFP~~~L~~lk~-KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~E 245 (610)
T KOG0341|consen 167 PPIKSFKEMKFPKPLLRGLKK-KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGE 245 (610)
T ss_pred CchhhhhhccCCHHHHHHHHh-cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCC
Confidence 344444456677888999986 6999999999999999999999999999999999999999863 3
Q ss_pred CCeEEEEccchHHHHHHHHHHHhc-------C---CcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHH
Q 004098 213 GKVVVVISPLISLMHDQCSKLSKH-------G---VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLA 282 (774)
Q Consensus 213 ~~~~LVvsPt~~L~~qq~~~l~~~-------g---i~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~ 282 (774)
++..|||||+|+|+.|.+..+..+ | ++++...+|.+... +....+.+.+|+|+||++|.+++. .+..
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~e-ql~~v~~GvHivVATPGRL~DmL~--KK~~ 322 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVRE-QLDVVRRGVHIVVATPGRLMDMLA--KKIM 322 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHH-HHHHHhcCeeEEEcCcchHHHHHH--Hhhc
Confidence 889999999999998887776654 3 45666667776654 445566779999999999999998 7777
Q ss_pred HhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEE
Q 004098 283 ESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVL 362 (774)
Q Consensus 283 ~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~ 362 (774)
++.-.+|+++||||+|.++| |..+++.+-.. | ...+|+++||||++..++......|-
T Consensus 323 sLd~CRyL~lDEADRmiDmG--FEddir~iF~~---F--------K~QRQTLLFSATMP~KIQ~FAkSALV--------- 380 (610)
T KOG0341|consen 323 SLDACRYLTLDEADRMIDMG--FEDDIRTIFSF---F--------KGQRQTLLFSATMPKKIQNFAKSALV--------- 380 (610)
T ss_pred cHHHHHHhhhhhHHHHhhcc--chhhHHHHHHH---H--------hhhhheeeeeccccHHHHHHHHhhcc---------
Confidence 78889999999999999999 99999888433 2 23789999999999988765555442
Q ss_pred ccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCC
Q 004098 363 TSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYD 442 (774)
Q Consensus 363 ~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (774)
.++...|-..... ++ +-++
T Consensus 381 -----KPvtvNVGRAGAA---sl-dViQ---------------------------------------------------- 399 (610)
T KOG0341|consen 381 -----KPVTVNVGRAGAA---SL-DVIQ---------------------------------------------------- 399 (610)
T ss_pred -----cceEEeccccccc---ch-hHHH----------------------------------------------------
Confidence 1222222211100 00 0000
Q ss_pred CccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCch
Q 004098 443 DEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTR 522 (774)
Q Consensus 443 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr 522 (774)
..+|+. ...|...+++.|.+. ..+++|||..+
T Consensus 400 -------------evEyVk---------------------------------qEaKiVylLeCLQKT--~PpVLIFaEkK 431 (610)
T KOG0341|consen 400 -------------EVEYVK---------------------------------QEAKIVYLLECLQKT--SPPVLIFAEKK 431 (610)
T ss_pred -------------HHHHHH---------------------------------hhhhhhhHHHHhccC--CCceEEEeccc
Confidence 122332 234555566666663 45899999999
Q ss_pred HHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhc
Q 004098 523 KETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602 (774)
Q Consensus 523 ~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GR 602 (774)
..++.+.+||--.|+.+..+|||.++++|...++.|+.|+-+|||||++++.|+|+|++.+|||||+|..+++|+|||||
T Consensus 432 ~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGR 511 (610)
T KOG0341|consen 432 ADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGR 511 (610)
T ss_pred cChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceEEEEeeCCC
Q 004098 603 AGRDGHLADCVLYANLSS 620 (774)
Q Consensus 603 aGR~G~~g~~il~~~~~~ 620 (774)
+||.|+.|.+.+|.+...
T Consensus 512 TGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 512 TGRSGKTGIATTFINKNQ 529 (610)
T ss_pred cCCCCCcceeeeeecccc
Confidence 999999999999987554
No 32
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-48 Score=392.26 Aligned_cols=339 Identities=17% Similarity=0.235 Sum_probs=262.1
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc------CCeEEEEccchHHHHH
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLISLMHD 228 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~------~~~~LVvsPt~~L~~q 228 (774)
..+.+++.+.|+ .+|+..|+|+|..+||.||.|+|+|.+|.||||||++|.+|++.+ +-.++|++||++|+-|
T Consensus 12 LGl~~Wlve~l~-~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~Q 90 (442)
T KOG0340|consen 12 LGLSPWLVEQLK-ALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQ 90 (442)
T ss_pred cCccHHHHHHHH-HhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHH
Confidence 456677888888 679999999999999999999999999999999999999999975 5589999999999999
Q ss_pred HHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHH--HHHHHhcCccEEEEecccccccCC
Q 004098 229 QCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL--QRLAESRGIALFAIDEVHCVSKWG 302 (774)
Q Consensus 229 q~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~--~~~~~~~~i~~iVIDEaH~l~~~g 302 (774)
..+.|... +++++.+.+|.+.- .+...+...++++++||+++..++... .....+.++.++|+||||++++-.
T Consensus 91 iaEQF~alGk~l~lK~~vivGG~d~i-~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~ 169 (442)
T KOG0340|consen 91 IAEQFIALGKLLNLKVSVIVGGTDMI-MQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGC 169 (442)
T ss_pred HHHHHHHhcccccceEEEEEccHHHh-hhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccc
Confidence 99998875 57888888887653 344556778899999999998877631 113346789999999999998755
Q ss_pred CCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccc
Q 004098 303 HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382 (774)
Q Consensus 303 ~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~ 382 (774)
|...+.-+ +..+|..+|.++||||.+....+.. +.+- ..++.|.+........
T Consensus 170 --f~d~L~~i-----------~e~lP~~RQtLlfSATitd~i~ql~----~~~i----------~k~~a~~~e~~~~vst 222 (442)
T KOG0340|consen 170 --FPDILEGI-----------EECLPKPRQTLLFSATITDTIKQLF----GCPI----------TKSIAFELEVIDGVST 222 (442)
T ss_pred --hhhHHhhh-----------hccCCCccceEEEEeehhhHHHHhh----cCCc----------ccccceEEeccCCCCc
Confidence 77777666 4556778899999999987665422 2110 1112222222111100
Q ss_pred hhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhc
Q 004098 383 ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (774)
Q Consensus 383 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (774)
.+. |. ..|+.
T Consensus 223 ---vet---L~---------------------------------------------------------------q~yI~- 232 (442)
T KOG0340|consen 223 ---VET---LY---------------------------------------------------------------QGYIL- 232 (442)
T ss_pred ---hhh---hh---------------------------------------------------------------hheee-
Confidence 000 00 00000
Q ss_pred CCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCC--CCCcEEEEeCchHHHHHHHHHHHhCCCceE
Q 004098 463 DSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL--EDGLTIIYVPTRKETLSIAKYLCGFGVKAA 540 (774)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~--~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~ 540 (774)
+....+-.-++..|...- ..+.++||+++..+|+.|+..|...++.+.
T Consensus 233 ------------------------------~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~ 282 (442)
T KOG0340|consen 233 ------------------------------VSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVV 282 (442)
T ss_pred ------------------------------cchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeee
Confidence 000011111222222221 367899999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 541 ~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
.+|+.|+|++|...+.+|+++.++|||||++++||+|||.|++|||||+|.++..|+||+||++|+|+.|.++.++...|
T Consensus 283 ~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rD 362 (442)
T KOG0340|consen 283 SLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRD 362 (442)
T ss_pred ehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred CC
Q 004098 621 MP 622 (774)
Q Consensus 621 ~~ 622 (774)
+.
T Consensus 363 v~ 364 (442)
T KOG0340|consen 363 VE 364 (442)
T ss_pred HH
Confidence 54
No 33
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-48 Score=404.50 Aligned_cols=344 Identities=19% Similarity=0.262 Sum_probs=291.6
Q ss_pred CCCccc--CCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc-----------cC
Q 004098 147 CPKEVE--IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----------TG 213 (774)
Q Consensus 147 ~~~~~~--~~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~-----------~~ 213 (774)
+|.++. .++.+...+...+++ ..|.+|+|+|.+++|..+.|+|++.+|.||||||.+|+.|++. .+
T Consensus 218 ~~rpvtsfeh~gfDkqLm~airk-~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~g 296 (731)
T KOG0339|consen 218 PPRPVTSFEHFGFDKQLMTAIRK-SEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEG 296 (731)
T ss_pred CCCCcchhhhcCchHHHHHHHhh-hhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCC
Confidence 444444 467789999999984 4899999999999999999999999999999999999999984 27
Q ss_pred CeEEEEccchHHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccE
Q 004098 214 KVVVVISPLISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIAL 289 (774)
Q Consensus 214 ~~~LVvsPt~~L~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~ 289 (774)
+..||++||++|+.|++.++++| |++++.+++|.+..++...+. .++.|||+||++|++++. .+..++.++.|
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk-~g~EivVaTPgRlid~Vk--mKatn~~rvS~ 373 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK-EGAEIVVATPGRLIDMVK--MKATNLSRVSY 373 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh-cCCeEEEechHHHHHHHH--hhcccceeeeE
Confidence 89999999999999999999886 789999999998866544444 779999999999999888 77788899999
Q ss_pred EEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCC
Q 004098 290 FAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPN 369 (774)
Q Consensus 290 iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~ 369 (774)
+|||||++|.++| |.+..+.|.. +++++.|.|+||||....+.......|.-+ ..++..+....|
T Consensus 374 LV~DEadrmfdmG--fe~qVrSI~~-----------hirpdrQtllFsaTf~~kIe~lard~L~dp--VrvVqg~vgean 438 (731)
T KOG0339|consen 374 LVLDEADRMFDMG--FEPQVRSIKQ-----------HIRPDRQTLLFSATFKKKIEKLARDILSDP--VRVVQGEVGEAN 438 (731)
T ss_pred EEEechhhhhccc--cHHHHHHHHh-----------hcCCcceEEEeeccchHHHHHHHHHHhcCC--eeEEEeehhccc
Confidence 9999999999999 9999999943 456699999999999998888777777532 222222111111
Q ss_pred cEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCC
Q 004098 370 LRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNS 449 (774)
Q Consensus 370 l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (774)
- ++.+
T Consensus 439 ~-----------------dITQ---------------------------------------------------------- 443 (731)
T KOG0339|consen 439 E-----------------DITQ---------------------------------------------------------- 443 (731)
T ss_pred c-----------------chhh----------------------------------------------------------
Confidence 0 0000
Q ss_pred CCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHH
Q 004098 450 PMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIA 529 (774)
Q Consensus 450 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~ 529 (774)
. .........|+.+++..|-+....+++|||+.-+..+++|+
T Consensus 444 ------------------~--------------------V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~ 485 (731)
T KOG0339|consen 444 ------------------T--------------------VSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIA 485 (731)
T ss_pred ------------------e--------------------eeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHH
Confidence 0 01111234567777888888878899999999999999999
Q ss_pred HHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCc
Q 004098 530 KYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609 (774)
Q Consensus 530 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~ 609 (774)
..|...++.+..+||+|.|.+|.+++.+|+.+...|||||+++++|+|||+++.||+||+-.+++.|.||+||+||.|..
T Consensus 486 a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k 565 (731)
T KOG0339|consen 486 ANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK 565 (731)
T ss_pred HHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeeCCCCC
Q 004098 610 ADCVLYANLSSMP 622 (774)
Q Consensus 610 g~~il~~~~~~~~ 622 (774)
|.+++|++..|..
T Consensus 566 GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 566 GVAYTLVTEKDAE 578 (731)
T ss_pred ceeeEEechhhHH
Confidence 9999999877754
No 34
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=9.3e-48 Score=428.54 Aligned_cols=331 Identities=20% Similarity=0.243 Sum_probs=252.5
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc------cCCeEEEEccchHHHHH
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHD 228 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~------~~~~~LVvsPt~~L~~q 228 (774)
..+.+.+.+.|. .+||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++. .+.++|||+||++|+.|
T Consensus 33 l~l~~~~~~~l~-~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q 111 (401)
T PTZ00424 33 LKLNEDLLRGIY-SYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQ 111 (401)
T ss_pred CCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHH
Confidence 346677888887 57999999999999999999999999999999999999999874 35689999999999999
Q ss_pred HHHHHHhcC----CcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCC
Q 004098 229 QCSKLSKHG----VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (774)
Q Consensus 229 q~~~l~~~g----i~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~ 304 (774)
+.+.+..++ +.+..+.++....... ......++|+|+||+++.+++. .+...+.++++|||||||++.+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~Ivv~Tp~~l~~~l~--~~~~~l~~i~lvViDEah~~~~~~-- 186 (401)
T PTZ00424 112 IQKVVLALGDYLKVRCHACVGGTVVRDDI-NKLKAGVHMVVGTPGRVYDMID--KRHLRVDDLKLFILDEADEMLSRG-- 186 (401)
T ss_pred HHHHHHHHhhhcCceEEEEECCcCHHHHH-HHHcCCCCEEEECcHHHHHHHH--hCCcccccccEEEEecHHHHHhcc--
Confidence 998887753 5555666665543332 3344557999999999988776 444567889999999999999888
Q ss_pred cHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEcc--CCCCCcEEEEeecCCccc
Q 004098 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTS--FFRPNLRFSVKHSKTSSR 382 (774)
Q Consensus 305 fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~--~~r~~l~~~v~~~~~~~~ 382 (774)
|+..+..+ +..++++.|++++|||++..+.......+..+ ..+.... .....+...+.....
T Consensus 187 ~~~~~~~i-----------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--- 250 (401)
T PTZ00424 187 FKGQIYDV-----------FKKLPPDVQVALFSATMPNEILELTTKFMRDP--KRILVKKDELTLEGIRQFYVAVEK--- 250 (401)
T ss_pred hHHHHHHH-----------HhhCCCCcEEEEEEecCCHHHHHHHHHHcCCC--EEEEeCCCCcccCCceEEEEecCh---
Confidence 66655544 22234478999999999887665444444211 1111000 000000000000000
Q ss_pred hhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhc
Q 004098 383 ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (774)
Q Consensus 383 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (774)
T Consensus 251 -------------------------------------------------------------------------------- 250 (401)
T PTZ00424 251 -------------------------------------------------------------------------------- 250 (401)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEe
Q 004098 463 DSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542 (774)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~ 542 (774)
...+...+. .+.......++||||++++.++.+++.|...++.+..+
T Consensus 251 --------------------------------~~~~~~~l~-~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~ 297 (401)
T PTZ00424 251 --------------------------------EEWKFDTLC-DLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCM 297 (401)
T ss_pred --------------------------------HHHHHHHHH-HHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEE
Confidence 000001111 11112244679999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 543 h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
||+|++++|..++++|++|+++|||||+++++|||+|+|++||+||+|.+...|+||+|||||.|+.|.|++|++..+
T Consensus 298 h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~ 375 (401)
T PTZ00424 298 HGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDD 375 (401)
T ss_pred eCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986443
No 35
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-48 Score=405.05 Aligned_cols=340 Identities=20% Similarity=0.296 Sum_probs=271.5
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc----------CCeEEEEccc
Q 004098 153 IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT----------GKVVVVISPL 222 (774)
Q Consensus 153 ~~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~----------~~~~LVvsPt 222 (774)
..++++....+.|++. +|..++.+|+++|+.+|+|+|+|..|.|||||||+|++|.|.. +--+|||+||
T Consensus 72 ~dlpls~~t~kgLke~-~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPT 150 (758)
T KOG0343|consen 72 ADLPLSQKTLKGLKEA-KFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPT 150 (758)
T ss_pred HhCCCchHHHHhHhhc-CCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecch
Confidence 4567888899999955 9999999999999999999999999999999999999999852 5679999999
Q ss_pred hHHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 004098 223 ISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (774)
Q Consensus 223 ~~L~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l 298 (774)
|+|+.|.+..|.+. .+.+..+.||..-. .+...+ ...+|+||||++|+.++.. .-.++..++.++|+||||++
T Consensus 151 RELA~QtFevL~kvgk~h~fSaGLiiGG~~~k-~E~eRi-~~mNILVCTPGRLLQHmde-~~~f~t~~lQmLvLDEADR~ 227 (758)
T KOG0343|consen 151 RELALQTFEVLNKVGKHHDFSAGLIIGGKDVK-FELERI-SQMNILVCTPGRLLQHMDE-NPNFSTSNLQMLVLDEADRM 227 (758)
T ss_pred HHHHHHHHHHHHHHhhccccccceeecCchhH-HHHHhh-hcCCeEEechHHHHHHhhh-cCCCCCCcceEEEeccHHHH
Confidence 99999999999985 46788888887643 233323 4579999999999988774 22345678999999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecC
Q 004098 299 SKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378 (774)
Q Consensus 299 ~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~ 378 (774)
+++| |...+..| +.++|+..|+|+||||.+..+.... .|.+.++. +++|....
T Consensus 228 LDMG--Fk~tL~~I-----------i~~lP~~RQTLLFSATqt~svkdLa--RLsL~dP~------------~vsvhe~a 280 (758)
T KOG0343|consen 228 LDMG--FKKTLNAI-----------IENLPKKRQTLLFSATQTKSVKDLA--RLSLKDPV------------YVSVHENA 280 (758)
T ss_pred HHHh--HHHHHHHH-----------HHhCChhheeeeeecccchhHHHHH--HhhcCCCc------------EEEEeccc
Confidence 9999 99988887 5566779999999999998887633 34433222 22222110
Q ss_pred CccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhh
Q 004098 379 TSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVE 458 (774)
Q Consensus 379 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (774)
.. ..+..+++
T Consensus 281 ~~---atP~~L~Q------------------------------------------------------------------- 290 (758)
T KOG0343|consen 281 VA---ATPSNLQQ------------------------------------------------------------------- 290 (758)
T ss_pred cc---cChhhhhh-------------------------------------------------------------------
Confidence 00 01111100
Q ss_pred hhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhC--C
Q 004098 459 FLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF--G 536 (774)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~--g 536 (774)
....+....|...+..+|..+ ...++|||..|.+.+..+++.+++. |
T Consensus 291 ------------------------------~y~~v~l~~Ki~~L~sFI~sh-lk~K~iVF~SscKqvkf~~e~F~rlrpg 339 (758)
T KOG0343|consen 291 ------------------------------SYVIVPLEDKIDMLWSFIKSH-LKKKSIVFLSSCKQVKFLYEAFCRLRPG 339 (758)
T ss_pred ------------------------------eEEEEehhhHHHHHHHHHHhc-cccceEEEEehhhHHHHHHHHHHhcCCC
Confidence 111122334444445555444 4568999999999999999999875 9
Q ss_pred CceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEe
Q 004098 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616 (774)
Q Consensus 537 ~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~ 616 (774)
++...+||+|+|..|..+..+|...+.-||+||++++||+|+|.|++||++|.|.++++|+||+||++|.+..|.|+++.
T Consensus 340 ~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L 419 (758)
T KOG0343|consen 340 IPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLML 419 (758)
T ss_pred CceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCcc
Q 004098 617 NLSSMPTL 624 (774)
Q Consensus 617 ~~~~~~~~ 624 (774)
.+++.+.+
T Consensus 420 ~psEeE~~ 427 (758)
T KOG0343|consen 420 TPSEEEAM 427 (758)
T ss_pred cchhHHHH
Confidence 98884443
No 36
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.3e-47 Score=387.57 Aligned_cols=337 Identities=21% Similarity=0.357 Sum_probs=275.3
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc------------cCCeEEEEc
Q 004098 153 IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------------TGKVVVVIS 220 (774)
Q Consensus 153 ~~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~------------~~~~~LVvs 220 (774)
..+.+++++.+++. ..||..|+-+|..|||-+|.|+|+++.|.||||||++|++|+++ .++.++|++
T Consensus 22 e~~gLD~RllkAi~-~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLv 100 (569)
T KOG0346|consen 22 EEFGLDSRLLKAIT-KLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILV 100 (569)
T ss_pred HHhCCCHHHHHHHH-HhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEe
Confidence 45678889999998 57999999999999999999999999999999999999999985 367899999
Q ss_pred cchHHHHHHHHHHHhc------CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHH-HHhcCccEEEEe
Q 004098 221 PLISLMHDQCSKLSKH------GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRL-AESRGIALFAID 293 (774)
Q Consensus 221 Pt~~L~~qq~~~l~~~------gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~-~~~~~i~~iVID 293 (774)
||++|++|.+..+.++ .++++-+.+..++.. ...++.+.++|+|+||.++..++. .+. ..+..+.++|+|
T Consensus 101 PTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv-~~~~L~d~pdIvV~TP~~ll~~~~--~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 101 PTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSV-NSVALMDLPDIVVATPAKLLRHLA--AGVLEYLDSLSFLVVD 177 (569)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHH-HHHHHccCCCeEEeChHHHHHHHh--hccchhhhheeeEEec
Confidence 9999999999998875 466776766655543 447888889999999999998877 333 556789999999
Q ss_pred cccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEE
Q 004098 294 EVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFS 373 (774)
Q Consensus 294 EaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~ 373 (774)
|||-++.+| |..++..| ...+|+..|.+++|||.+..+.. ++.|-+.. |.++.
T Consensus 178 EADLllsfG--Yeedlk~l-----------~~~LPr~~Q~~LmSATl~dDv~~--LKkL~l~n-PviLk----------- 230 (569)
T KOG0346|consen 178 EADLLLSFG--YEEDLKKL-----------RSHLPRIYQCFLMSATLSDDVQA--LKKLFLHN-PVILK----------- 230 (569)
T ss_pred hhhhhhhcc--cHHHHHHH-----------HHhCCchhhheeehhhhhhHHHH--HHHHhccC-CeEEE-----------
Confidence 999999999 99999988 34566789999999999888765 33343332 22221
Q ss_pred EeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCcc
Q 004098 374 VKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGK 453 (774)
Q Consensus 374 v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (774)
+......
T Consensus 231 l~e~el~------------------------------------------------------------------------- 237 (569)
T KOG0346|consen 231 LTEGELP------------------------------------------------------------------------- 237 (569)
T ss_pred eccccCC-------------------------------------------------------------------------
Confidence 1110000
Q ss_pred chhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHH
Q 004098 454 EMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLC 533 (774)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~ 533 (774)
..+.+.+|.+.|. +.+|...++.+|+-.+-.++.|||+||.+.|..|--+|.
T Consensus 238 -------~~dqL~Qy~v~cs---------------------e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLe 289 (569)
T KOG0346|consen 238 -------NPDQLTQYQVKCS---------------------EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLE 289 (569)
T ss_pred -------CcccceEEEEEec---------------------cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHH
Confidence 0112233444442 234555556666555567899999999999999999999
Q ss_pred hCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec-----------------------------------ccccCccc
Q 004098 534 GFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----------------------------------AFGMGIDK 578 (774)
Q Consensus 534 ~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~-----------------------------------a~~~GIDi 578 (774)
..|++.+.++|.|+...|..++++|..|-+++||||| -.+||||+
T Consensus 290 qFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF 369 (569)
T KOG0346|consen 290 QFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDF 369 (569)
T ss_pred HhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccc
Confidence 9999999999999999999999999999999999998 35699999
Q ss_pred CCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCC
Q 004098 579 LNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (774)
Q Consensus 579 p~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~ 621 (774)
.+|..|||||+|.++.+|+||+||++|.+.+|.++.|+.+.+.
T Consensus 370 ~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~ 412 (569)
T KOG0346|consen 370 HHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEE 412 (569)
T ss_pred hheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHH
Confidence 9999999999999999999999999999999999999977654
No 37
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.9e-47 Score=372.92 Aligned_cols=329 Identities=21% Similarity=0.285 Sum_probs=260.0
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc------CCeEEEEccchHHHHHHHH
Q 004098 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLISLMHDQCS 231 (774)
Q Consensus 158 ~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~------~~~~LVvsPt~~L~~qq~~ 231 (774)
..++..-+. ..||+.|.|+|.++||.+|.|+|+++-|..|+|||.+|.+|.|.+ .-.++|++|||+|+-|..+
T Consensus 93 kr~LLmgIf-e~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSq 171 (459)
T KOG0326|consen 93 KRELLMGIF-EKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQ 171 (459)
T ss_pred hHHHHHHHH-HhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHH
Confidence 333433343 249999999999999999999999999999999999999999964 3479999999999877766
Q ss_pred HHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHH
Q 004098 232 KLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRP 307 (774)
Q Consensus 232 ~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~ 307 (774)
.+.+. |+.+...+||.+..+.. ..+...++++|+||++++++.. ++...+++..++|+||||.+++.. |.+
T Consensus 172 vc~~lskh~~i~vmvttGGT~lrDDI-~Rl~~~VH~~vgTPGRIlDL~~--KgVa~ls~c~~lV~DEADKlLs~~--F~~ 246 (459)
T KOG0326|consen 172 VCKELSKHLGIKVMVTTGGTSLRDDI-MRLNQTVHLVVGTPGRILDLAK--KGVADLSDCVILVMDEADKLLSVD--FQP 246 (459)
T ss_pred HHHHHhcccCeEEEEecCCcccccce-eeecCceEEEEcCChhHHHHHh--cccccchhceEEEechhhhhhchh--hhh
Confidence 66553 78888888887654322 1245678999999999999988 778888999999999999998644 888
Q ss_pred HHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhH
Q 004098 308 DYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKK 387 (774)
Q Consensus 308 ~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~ 387 (774)
.+.+| +..+|...|++++|||.+-.+...+.+.|.-+ ..+ .
T Consensus 247 ~~e~l-----------i~~lP~~rQillySATFP~tVk~Fm~~~l~kP---y~I-----------N-------------- 287 (459)
T KOG0326|consen 247 IVEKL-----------ISFLPKERQILLYSATFPLTVKGFMDRHLKKP---YEI-----------N-------------- 287 (459)
T ss_pred HHHHH-----------HHhCCccceeeEEecccchhHHHHHHHhccCc---cee-----------e--------------
Confidence 88888 55577799999999999998888777777532 111 0
Q ss_pred hHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcc
Q 004098 388 DFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDD 467 (774)
Q Consensus 388 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (774)
+++.+..+ ++.+
T Consensus 288 ----LM~eLtl~----------------------------------------------------------------GvtQ 299 (459)
T KOG0326|consen 288 ----LMEELTLK----------------------------------------------------------------GVTQ 299 (459)
T ss_pred ----hhhhhhhc----------------------------------------------------------------chhh
Confidence 11111100 0000
Q ss_pred cccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCC
Q 004098 468 WDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLP 547 (774)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~ 547 (774)
|+ ....+..|... +..|...+.-...||||++.+.+|-+|+.+.+.|+.|.++|+.|-
T Consensus 300 yY---------------------afV~e~qKvhC-LntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~ 357 (459)
T KOG0326|consen 300 YY---------------------AFVEERQKVHC-LNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMA 357 (459)
T ss_pred he---------------------eeechhhhhhh-HHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHH
Confidence 00 00111112111 122222234557999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCC
Q 004098 548 KSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (774)
Q Consensus 548 ~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~ 621 (774)
+++|.+++.+|++|.++.||||+.+.||||+++|++|||||+|++.|+|+||+||+||.|..|.++-+++..|.
T Consensus 358 Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedr 431 (459)
T KOG0326|consen 358 QEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDR 431 (459)
T ss_pred HhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876654
No 38
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-45 Score=414.47 Aligned_cols=341 Identities=23% Similarity=0.366 Sum_probs=286.5
Q ss_pred CCCcccC--CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc-----------cC
Q 004098 147 CPKEVEI--GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----------TG 213 (774)
Q Consensus 147 ~~~~~~~--~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~-----------~~ 213 (774)
+|.++.. ...+...+...|+ .+||..++|+|.+|||+|+.|+|+|++|.||||||++|+||++. .+
T Consensus 360 ~pkpv~sW~q~gl~~~il~tlk-kl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdG 438 (997)
T KOG0334|consen 360 CPKPVTSWTQCGLSSKILETLK-KLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDG 438 (997)
T ss_pred CCcccchHhhCCchHHHHHHHH-HhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCC
Confidence 3444443 4566778888895 78999999999999999999999999999999999999999984 38
Q ss_pred CeEEEEccchHHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHH-HHHHHHhcCcc
Q 004098 214 KVVVVISPLISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKP-LQRLAESRGIA 288 (774)
Q Consensus 214 ~~~LVvsPt~~L~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~-~~~~~~~~~i~ 288 (774)
+.+||++||++|+.|+.+++.+| ++.+++.+++.........+.++ +.|+|+||+++++++.. -....++.++.
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcC-CceEEeccchhhhhHhhcCCccccccccc
Confidence 99999999999999999999886 89999999988877666666666 89999999999987663 23455667788
Q ss_pred EEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEc--cCC
Q 004098 289 LFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT--SFF 366 (774)
Q Consensus 289 ~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~--~~~ 366 (774)
++|+||||+|.+.| |.|....| ++++++..|++++|||.+..+.......|+.+ ..++.. +..
T Consensus 518 ~lv~deaDrmfdmg--fePq~~~I-----------i~nlrpdrQtvlfSatfpr~m~~la~~vl~~P--veiiv~~~svV 582 (997)
T KOG0334|consen 518 YLVLDEADRMFDMG--FEPQITRI-----------LQNLRPDRQTVLFSATFPRSMEALARKVLKKP--VEIIVGGRSVV 582 (997)
T ss_pred eeeechhhhhheec--cCcccchH-----------HhhcchhhhhhhhhhhhhHHHHHHHHHhhcCC--eeEEEccceeE
Confidence 99999999999999 99998886 56667799999999999998777666667632 222221 111
Q ss_pred CCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccC
Q 004098 367 RPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDV 446 (774)
Q Consensus 367 r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (774)
-..+..
T Consensus 583 ~k~V~q-------------------------------------------------------------------------- 588 (997)
T KOG0334|consen 583 CKEVTQ-------------------------------------------------------------------------- 588 (997)
T ss_pred eccceE--------------------------------------------------------------------------
Confidence 111111
Q ss_pred CCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhc-cccCchhHhhhhccCCCCCCcEEEEeCchHHH
Q 004098 447 GNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERT-DLLNKPAERLSMLQEPLEDGLTIIYVPTRKET 525 (774)
Q Consensus 447 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~ 525 (774)
..... ....|...++++|.+....+++||||.+...|
T Consensus 589 ------------------------------------------~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~ 626 (997)
T KOG0334|consen 589 ------------------------------------------VVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKA 626 (997)
T ss_pred ------------------------------------------EEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHH
Confidence 11111 24567777888888777889999999999999
Q ss_pred HHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhcccc
Q 004098 526 LSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGR 605 (774)
Q Consensus 526 ~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR 605 (774)
+.+.+.|.+.|+.|..+||+.++.+|..+++.|++|.+.+||||+++++|+|++++.+|||||+|...+.|+||.|||||
T Consensus 627 d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgr 706 (997)
T KOG0334|consen 627 DALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGR 706 (997)
T ss_pred HHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEeeCCC
Q 004098 606 DGHLADCVLYANLSS 620 (774)
Q Consensus 606 ~G~~g~~il~~~~~~ 620 (774)
.|+.|.|++|..+.+
T Consensus 707 agrkg~AvtFi~p~q 721 (997)
T KOG0334|consen 707 AGRKGAAVTFITPDQ 721 (997)
T ss_pred CCccceeEEEeChHH
Confidence 999999999998744
No 39
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.8e-44 Score=378.38 Aligned_cols=426 Identities=19% Similarity=0.176 Sum_probs=273.4
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc----cCCeEEEEccchHHHHHHHHHHHhc-CC---cEE
Q 004098 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSKH-GV---TAC 241 (774)
Q Consensus 170 g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~----~~~~~LVvsPt~~L~~qq~~~l~~~-gi---~~~ 241 (774)
+.-++|.||......++ .+|+|+++|||.|||+++.+.+.. .++++|+++||+.|+.|+...|.+. |+ ..+
T Consensus 12 ~~ie~R~YQ~~i~a~al-~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~ 90 (542)
T COG1111 12 NTIEPRLYQLNIAAKAL-FKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIA 90 (542)
T ss_pred ccccHHHHHHHHHHHHh-hcCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhhee
Confidence 34479999999999999 459999999999999998887763 2558999999999999999999984 66 466
Q ss_pred EEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcc
Q 004098 242 FLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGA 321 (774)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~ 321 (774)
.++|..........|..+ +|+|+||+.+.+.+. .+.+++.++.++|+||||+... ...|..+....-...
T Consensus 91 ~ltGev~p~~R~~~w~~~--kVfvaTPQvveNDl~--~Grid~~dv~~lifDEAHRAvG-----nyAYv~Va~~y~~~~- 160 (542)
T COG1111 91 ALTGEVRPEEREELWAKK--KVFVATPQVVENDLK--AGRIDLDDVSLLIFDEAHRAVG-----NYAYVFVAKEYLRSA- 160 (542)
T ss_pred eecCCCChHHHHHHHhhC--CEEEeccHHHHhHHh--cCccChHHceEEEechhhhccC-----cchHHHHHHHHHHhc-
Confidence 788888777666666665 899999999998777 7888999999999999999974 335555544322222
Q ss_pred cccccccCCCCEEEEeccC--CHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEee-----cCCccchhhhHhHHHHHH
Q 004098 322 NNLKSLKFDIPLMALTATA--TIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH-----SKTSSRASYKKDFCQLID 394 (774)
Q Consensus 322 ~~~~~l~~~~~il~lTAT~--~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~-----~~~~~~~~~~~~l~~l~~ 394 (774)
.++.+++||||| +.+-..++++.|++.+ ..+.+..+.+ +.-.|.. .+-..+ ...+++..++.
T Consensus 161 -------k~~~ilgLTASPGs~~ekI~eV~~nLgIe~--vevrTE~d~D-V~~Yv~~~kve~ikV~lp-~e~~~ir~~l~ 229 (542)
T COG1111 161 -------KNPLILGLTASPGSDLEKIQEVVENLGIEK--VEVRTEEDPD-VRPYVKKIKVEWIKVDLP-EEIKEIRDLLR 229 (542)
T ss_pred -------cCceEEEEecCCCCCHHHHHHHHHhCCcce--EEEecCCCcc-HHHhhccceeEEEeccCc-HHHHHHHHHHH
Confidence 167799999999 4567788999999863 3333333222 2211111 111111 11122222222
Q ss_pred HHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCccccccccc
Q 004098 395 IYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGE 474 (774)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 474 (774)
.........-+..-++..... ................+.....+.|................++|+.+++..++....+
T Consensus 230 ~~l~~~Lk~L~~~g~~~~~~~-~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~ 308 (542)
T COG1111 230 DALKPRLKPLKELGVIESSSP-VSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEK 308 (542)
T ss_pred HHHHHHHHHHHHcCceeccCc-ccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 111111100011111000000 0000000000000011111111111101111111222344555666555554333222
Q ss_pred ccCCCCC--C--------CCCCcc-------chhhccccCchhHhhhhccCCC---CCCcEEEEeCchHHHHHHHHHHHh
Q 004098 475 FYGHSPH--R--------DRDTDR-------SFERTDLLNKPAERLSMLQEPL---EDGLTIIYVPTRKETLSIAKYLCG 534 (774)
Q Consensus 475 ~~~~~~~--~--------~~~~~~-------~~~~~~~~~k~~~ll~~L~~~~---~~~~~IIF~~sr~~~~~l~~~L~~ 534 (774)
....... . ...... .......++|...+.+++++.+ .+.++|||++.|.+++.|+++|.+
T Consensus 309 l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~ 388 (542)
T COG1111 309 LEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKK 388 (542)
T ss_pred HHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHh
Confidence 2211111 0 000000 0111233567777777776655 445999999999999999999999
Q ss_pred CCCceE-Eec--------CCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhcccc
Q 004098 535 FGVKAA-AYN--------ASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGR 605 (774)
Q Consensus 535 ~g~~~~-~~h--------~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR 605 (774)
.++.+. .+- .||+|+++.+++++|++|+++|||||+++++|||+|+|++||+|+...|...++||.|||||
T Consensus 389 ~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR 468 (542)
T COG1111 389 IGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR 468 (542)
T ss_pred cCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc
Confidence 988874 333 48999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEeeCC
Q 004098 606 DGHLADCVLYANLS 619 (774)
Q Consensus 606 ~G~~g~~il~~~~~ 619 (774)
. +.|.+++++...
T Consensus 469 ~-r~Grv~vLvt~g 481 (542)
T COG1111 469 K-RKGRVVVLVTEG 481 (542)
T ss_pred C-CCCeEEEEEecC
Confidence 9 889998888655
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.2e-42 Score=415.77 Aligned_cols=336 Identities=21% Similarity=0.247 Sum_probs=237.0
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc------------cCCeEEEEccch
Q 004098 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------------TGKVVVVISPLI 223 (774)
Q Consensus 156 ~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~------------~~~~~LVvsPt~ 223 (774)
.+++.+.+.+++ +|..|+|+|.+||+.+++|+|++++||||||||++|.+|++. .+..+|||+||+
T Consensus 17 ~l~~~v~~~~~~--~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtr 94 (876)
T PRK13767 17 LLRPYVREWFKE--KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLR 94 (876)
T ss_pred hcCHHHHHHHHH--ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHH
Confidence 455667777775 577899999999999999999999999999999999999873 134699999999
Q ss_pred HHHHHHHHHHHh---------------c-CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCc
Q 004098 224 SLMHDQCSKLSK---------------H-GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGI 287 (774)
Q Consensus 224 ~L~~qq~~~l~~---------------~-gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i 287 (774)
+|+.|+.+.+.. . ++.+...+|+.+... ....+...++|+|+|||+|..++........+.++
T Consensus 95 aLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~-r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l 173 (876)
T PRK13767 95 ALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYE-KQKMLKKPPHILITTPESLAILLNSPKFREKLRTV 173 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHH-HHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcC
Confidence 999999876542 1 456677777766543 34455667899999999998766532112246789
Q ss_pred cEEEEeccccccc--CCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCC-----CCceE
Q 004098 288 ALFAIDEVHCVSK--WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMS-----KGTKF 360 (774)
Q Consensus 288 ~~iVIDEaH~l~~--~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~-----~~~~~ 360 (774)
++|||||||.+.+ +|..+...+.+|..+. +...|+++||||+++ .+++..+|... ..+..
T Consensus 174 ~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~-----------~~~~q~IglSATl~~--~~~va~~L~~~~~~~~~r~~~ 240 (876)
T PRK13767 174 KWVIVDEIHSLAENKRGVHLSLSLERLEELA-----------GGEFVRIGLSATIEP--LEEVAKFLVGYEDDGEPRDCE 240 (876)
T ss_pred CEEEEechhhhccCccHHHHHHHHHHHHHhc-----------CCCCeEEEEecccCC--HHHHHHHhcCccccCCCCceE
Confidence 9999999999975 4444444455543332 126789999999975 34556666432 11111
Q ss_pred EEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCC
Q 004098 361 VLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGY 440 (774)
Q Consensus 361 ~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (774)
+.......++...+.......
T Consensus 241 iv~~~~~k~~~i~v~~p~~~l----------------------------------------------------------- 261 (876)
T PRK13767 241 IVDARFVKPFDIKVISPVDDL----------------------------------------------------------- 261 (876)
T ss_pred EEccCCCccceEEEeccCccc-----------------------------------------------------------
Confidence 111111111111111000000
Q ss_pred CCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCC-CCCcEEEEe
Q 004098 441 YDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-EDGLTIIYV 519 (774)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~-~~~~~IIF~ 519 (774)
.. .........+...|.+.. ...++||||
T Consensus 262 -------------------~~-------------------------------~~~~~~~~~l~~~L~~~i~~~~~~LVF~ 291 (876)
T PRK13767 262 -------------------IH-------------------------------TPAEEISEALYETLHELIKEHRTTLIFT 291 (876)
T ss_pred -------------------cc-------------------------------cccchhHHHHHHHHHHHHhcCCCEEEEe
Confidence 00 000000000111111111 246899999
Q ss_pred CchHHHHHHHHHHHhC------CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCH
Q 004098 520 PTRKETLSIAKYLCGF------GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSL 593 (774)
Q Consensus 520 ~sr~~~~~l~~~L~~~------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~ 593 (774)
+|++.|+.++..|.+. +..+..+||+|++++|..++++|++|+++|||||+++++|||+|+|++||+|+.|.++
T Consensus 292 nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv 371 (876)
T PRK13767 292 NTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSV 371 (876)
T ss_pred CCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCH
Confidence 9999999999999873 4689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccC-CCcceEEEEe
Q 004098 594 EAYYQEAGRAGRD-GHLADCVLYA 616 (774)
Q Consensus 594 ~~y~Qr~GRaGR~-G~~g~~il~~ 616 (774)
..|+||+|||||. |..+.++++.
T Consensus 372 ~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 372 SRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred HHHHHhcccCCCCCCCCCcEEEEE
Confidence 9999999999986 4455555554
No 41
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-43 Score=367.84 Aligned_cols=345 Identities=20% Similarity=0.251 Sum_probs=237.2
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHc---------CCCEEEEecCCCchHHHHHHhhhc-------cCCeEEEEccchH
Q 004098 161 VNSLLKKHFGHSSLKNFQKEALSAWLA---------HHDCLVLAATGSGKSLCFQIPALL-------TGKVVVVISPLIS 224 (774)
Q Consensus 161 l~~~L~~~~g~~~~r~~Q~~ai~~il~---------g~d~lv~apTGsGKTl~~~lpal~-------~~~~~LVvsPt~~ 224 (774)
+.+.|+ ..+++...|+|..++++++. .+|++|.|||||||||||.+|+++ +.-++|||+||++
T Consensus 148 ~~q~l~-k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~ 226 (620)
T KOG0350|consen 148 IDQLLV-KMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRE 226 (620)
T ss_pred HHHHHH-HhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHH
Confidence 344465 56899999999999999973 589999999999999999999985 2468999999999
Q ss_pred HHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCc----eEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 004098 225 LMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMY----SIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVH 296 (774)
Q Consensus 225 L~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~----~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH 296 (774)
|+.|+++.|.++ |+.++.+.+..+-.....++..... +|+|+||++|.+++.. .+-+.+..++|+||||||
T Consensus 227 L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~-~k~f~Lk~LrfLVIDEAD 305 (620)
T KOG0350|consen 227 LALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNN-TKSFDLKHLRFLVIDEAD 305 (620)
T ss_pred HHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccC-CCCcchhhceEEEechHH
Confidence 999999999987 6776666665555555555555444 9999999999998875 445578889999999999
Q ss_pred ccccCCCCcHHHHHHHHHHHHH-------------hc---cc-------ccccccCCCCEEEEeccCCHHHHHHHHHHcC
Q 004098 297 CVSKWGHDFRPDYRRLSVLREN-------------FG---AN-------NLKSLKFDIPLMALTATATIQVREDILKSLH 353 (774)
Q Consensus 297 ~l~~~g~~fr~~~~~l~~l~~~-------------~~---~~-------~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~ 353 (774)
+|++.. |..=+-.+..+... +. .. .+-.+.+....|.+|||+++.-..-.--.|+
T Consensus 306 Rll~qs--fQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~ 383 (620)
T KOG0350|consen 306 RLLDQS--FQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLH 383 (620)
T ss_pred HHHHHH--HHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcC
Confidence 997522 22211111111110 00 00 0011122223556666654433321111222
Q ss_pred CCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCC
Q 004098 354 MSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRIS 433 (774)
Q Consensus 354 ~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (774)
++ ..+.... ..-..|.+-.
T Consensus 384 ~P---rl~~v~~-~~~~ryslp~--------------------------------------------------------- 402 (620)
T KOG0350|consen 384 IP---RLFHVSK-PLIGRYSLPS--------------------------------------------------------- 402 (620)
T ss_pred CC---ceEEeec-ccceeeecCh---------------------------------------------------------
Confidence 21 1111000 0001111100
Q ss_pred CCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCC
Q 004098 434 PNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDG 513 (774)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~ 513 (774)
+| ....+ ......++..+..++... +..
T Consensus 403 -------------------------~l-----~~~~v---------------------v~~~~~kpl~~~~lI~~~-k~~ 430 (620)
T KOG0350|consen 403 -------------------------SL-----SHRLV---------------------VTEPKFKPLAVYALITSN-KLN 430 (620)
T ss_pred -------------------------hh-----hhcee---------------------ecccccchHhHHHHHHHh-hcc
Confidence 00 00000 000111222222223222 456
Q ss_pred cEEEEeCchHHHHHHHHHHH----hCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCC
Q 004098 514 LTIIYVPTRKETLSIAKYLC----GFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW 589 (774)
Q Consensus 514 ~~IIF~~sr~~~~~l~~~L~----~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~ 589 (774)
++|+|+++...+..++..|. +..+++..|.|+++.+.|...+++|..|+++||||||+++||||+.+|+.||+||+
T Consensus 431 r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~ 510 (620)
T KOG0350|consen 431 RTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDP 510 (620)
T ss_pred eEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCC
Confidence 89999999999999999887 34678888999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhccccCCCcceEEEEeeCCCCC
Q 004098 590 PQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622 (774)
Q Consensus 590 p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~ 622 (774)
|.+...|+||+||++|+|+.|.|+.+.+..+..
T Consensus 511 P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r 543 (620)
T KOG0350|consen 511 PASDKTYVHRAGRTARAGQDGYAITLLDKHEKR 543 (620)
T ss_pred CchhhHHHHhhcccccccCCceEEEeeccccch
Confidence 999999999999999999999999998765543
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-41 Score=402.50 Aligned_cols=336 Identities=25% Similarity=0.288 Sum_probs=246.7
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHH
Q 004098 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSA-WLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCS 231 (774)
Q Consensus 156 ~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~-il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~ 231 (774)
++++.+.+.|++ .|+.+|+|+|.++++. ++.|+|++++||||+|||++|.+|++. .++++|||+|+++|+.|+++
T Consensus 7 ~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~ 85 (737)
T PRK02362 7 PLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFE 85 (737)
T ss_pred CCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHH
Confidence 467788888984 6999999999999998 678999999999999999999999874 58899999999999999999
Q ss_pred HHHhc---CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHH
Q 004098 232 KLSKH---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPD 308 (774)
Q Consensus 232 ~l~~~---gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~ 308 (774)
.+.++ |+++..++|+..... .+ .+..+|+|+|||++..++.. ....+.++++|||||+|.+.+.+ +.+.
T Consensus 86 ~~~~~~~~g~~v~~~tGd~~~~~---~~-l~~~~IiV~Tpek~~~llr~--~~~~l~~v~lvViDE~H~l~d~~--rg~~ 157 (737)
T PRK02362 86 EFERFEELGVRVGISTGDYDSRD---EW-LGDNDIIVATSEKVDSLLRN--GAPWLDDITCVVVDEVHLIDSAN--RGPT 157 (737)
T ss_pred HHHHhhcCCCEEEEEeCCcCccc---cc-cCCCCEEEECHHHHHHHHhc--ChhhhhhcCEEEEECccccCCCc--chHH
Confidence 99886 888888887754422 11 24579999999999877662 22345789999999999998754 5666
Q ss_pred HHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCC-CcEEEEeecCCccchhhhH
Q 004098 309 YRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP-NLRFSVKHSKTSSRASYKK 387 (774)
Q Consensus 309 ~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~-~l~~~v~~~~~~~~~~~~~ 387 (774)
+..+...... ..+..|+++||||++. .+++..+|+.. .+ .+..|| .+...+....... +.
T Consensus 158 le~il~rl~~--------~~~~~qii~lSATl~n--~~~la~wl~~~----~~-~~~~rpv~l~~~v~~~~~~~---~~- 218 (737)
T PRK02362 158 LEVTLAKLRR--------LNPDLQVVALSATIGN--ADELADWLDAE----LV-DSEWRPIDLREGVFYGGAIH---FD- 218 (737)
T ss_pred HHHHHHHHHh--------cCCCCcEEEEcccCCC--HHHHHHHhCCC----cc-cCCCCCCCCeeeEecCCeec---cc-
Confidence 6554322221 2237899999999974 45677888632 12 122232 2222211100000 00
Q ss_pred hHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcc
Q 004098 388 DFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDD 467 (774)
Q Consensus 388 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (774)
. .. ..+..
T Consensus 219 ----------------~-~~--------------------------------------------------~~~~~----- 226 (737)
T PRK02362 219 ----------------D-SQ--------------------------------------------------REVEV----- 226 (737)
T ss_pred ----------------c-cc--------------------------------------------------ccCCC-----
Confidence 0 00 00000
Q ss_pred cccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCC-----------
Q 004098 468 WDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG----------- 536 (774)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g----------- 536 (774)
.........+.+.+. .++++||||+|++.|+.++..|....
T Consensus 227 -------------------------~~~~~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~ 278 (737)
T PRK02362 227 -------------------------PSKDDTLNLVLDTLE---EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAE 278 (737)
T ss_pred -------------------------ccchHHHHHHHHHHH---cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 000000111111111 45789999999999999999886431
Q ss_pred -------------------------CceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEE----e
Q 004098 537 -------------------------VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH----Y 587 (774)
Q Consensus 537 -------------------------~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~----~ 587 (774)
..+..+||+|++++|..+++.|++|.++|||||+++++|||+|.+++||+ |
T Consensus 279 ~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~y 358 (737)
T PRK02362 279 LAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRY 358 (737)
T ss_pred HHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceee
Confidence 36889999999999999999999999999999999999999999999997 7
Q ss_pred C-----CCCCHHHHHHHhhccccCCCc--ceEEEEeeCC
Q 004098 588 G-----WPQSLEAYYQEAGRAGRDGHL--ADCVLYANLS 619 (774)
Q Consensus 588 d-----~p~s~~~y~Qr~GRaGR~G~~--g~~il~~~~~ 619 (774)
| .|.+..+|+||+|||||.|.. |.|++++...
T Consensus 359 d~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 359 DGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred cCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 6 689999999999999999965 8999998654
No 43
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-42 Score=344.18 Aligned_cols=331 Identities=21% Similarity=0.276 Sum_probs=256.3
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHc--CCCEEEEecCCCchHHHHHHhhhcc------CCeEEEEccchHH
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLA--HHDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLISL 225 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~--g~d~lv~apTGsGKTl~~~lpal~~------~~~~LVvsPt~~L 225 (774)
...+.+++.+.|- .++|..|+.+|..|+|.+|. .+|+|..+..|+|||.||.|.+|.+ .+.++.|+||++|
T Consensus 94 eL~LkPellkgly-~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrEL 172 (477)
T KOG0332|consen 94 ELRLKPELLKGLY-AMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTREL 172 (477)
T ss_pred hhCCCHHHHhHHH-HhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHH
Confidence 4566778888887 58999999999999999997 4799999999999999999999854 6889999999999
Q ss_pred HHHHHHHHHhcCC----cEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc-
Q 004098 226 MHDQCSKLSKHGV----TACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK- 300 (774)
Q Consensus 226 ~~qq~~~l~~~gi----~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~- 300 (774)
+.|..+.+.+.|- .+.+..-+... .....+ ..+|++.||+++.+++.. .+.+.+..+..+|+|||+.|.+
T Consensus 173 A~Q~~eVv~eMGKf~~ita~yair~sk~--~rG~~i--~eqIviGTPGtv~Dlm~k-lk~id~~kikvfVlDEAD~Mi~t 247 (477)
T KOG0332|consen 173 APQTGEVVEEMGKFTELTASYAIRGSKA--KRGNKL--TEQIVIGTPGTVLDLMLK-LKCIDLEKIKVFVLDEADVMIDT 247 (477)
T ss_pred HHHHHHHHHHhcCceeeeEEEEecCccc--ccCCcc--hhheeeCCCccHHHHHHH-HHhhChhhceEEEecchhhhhhc
Confidence 9999999988763 44444333211 011111 138999999999998774 2566788899999999999985
Q ss_pred CCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEE-ccCCCCCcEEEEeecCC
Q 004098 301 WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVL-TSFFRPNLRFSVKHSKT 379 (774)
Q Consensus 301 ~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~-~~~~r~~l~~~v~~~~~ 379 (774)
.| |...-.+| ...+|++.|++++|||....+.......+.-.. +.++. ....-
T Consensus 248 qG--~~D~S~rI-----------~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n-~i~Lk~eel~L------------ 301 (477)
T KOG0332|consen 248 QG--FQDQSIRI-----------MRSLPRNQQLLLFSATFVEKVAAFALKIVPNAN-VIILKREELAL------------ 301 (477)
T ss_pred cc--ccccchhh-----------hhhcCCcceEEeeechhHHHHHHHHHHhcCCCc-eeeeehhhccc------------
Confidence 56 66666666 233556899999999999888887766664321 11111 01001
Q ss_pred ccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhh
Q 004098 380 SSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEF 459 (774)
Q Consensus 380 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (774)
T Consensus 302 -------------------------------------------------------------------------------- 301 (477)
T KOG0332|consen 302 -------------------------------------------------------------------------------- 301 (477)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCce
Q 004098 460 LENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539 (774)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~ 539 (774)
+.+.++.+.|.. ...|...+.+ |...+.-++.||||.|++.+..|+..|...|+.+
T Consensus 302 ---~~IkQlyv~C~~--------------------~~~K~~~l~~-lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V 357 (477)
T KOG0332|consen 302 ---DNIKQLYVLCAC--------------------RDDKYQALVN-LYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQV 357 (477)
T ss_pred ---cchhhheeeccc--------------------hhhHHHHHHH-HHhhhhhhheEEEEeehhhHHHHHHHHHhcCcee
Confidence 111222222210 1112222222 4445567899999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCC------CHHHHHHHhhccccCCCcceEE
Q 004098 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ------SLEAYYQEAGRAGRDGHLADCV 613 (774)
Q Consensus 540 ~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~------s~~~y~Qr~GRaGR~G~~g~~i 613 (774)
..+||+|.-++|..++++|+.|+.+|||+|++++||||++.|++|||||+|. +.+.|+||||||||.|+.|.++
T Consensus 358 ~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~ 437 (477)
T KOG0332|consen 358 SLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAI 437 (477)
T ss_pred EEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEE
Confidence 9999999999999999999999999999999999999999999999999994 7899999999999999999999
Q ss_pred EEeeCCC
Q 004098 614 LYANLSS 620 (774)
Q Consensus 614 l~~~~~~ 620 (774)
-|++..+
T Consensus 438 n~v~~~~ 444 (477)
T KOG0332|consen 438 NLVDDKD 444 (477)
T ss_pred EeecccC
Confidence 9876443
No 44
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.8e-40 Score=379.08 Aligned_cols=336 Identities=24% Similarity=0.331 Sum_probs=258.1
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc----c-------CCeEEEEccch
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----T-------GKVVVVISPLI 223 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~----~-------~~~~LVvsPt~ 223 (774)
..+++.+.+.+++. |.+|||.|.+||+.+.+|+|+||+||||||||+++.||++. . +-.+|+|+|++
T Consensus 6 ~~l~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLk 83 (814)
T COG1201 6 NILDPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLK 83 (814)
T ss_pred hhcCHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHH
Confidence 45677888888866 88999999999999999999999999999999999999974 1 24799999999
Q ss_pred HHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 224 SLMHDQCSKLSK----HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 224 ~L~~qq~~~l~~----~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
+|.+|+...|.. +|+++..-+|+++... .++.....++|+++|||+|.-++..-.-.-.+.++.++||||.|.+.
T Consensus 84 ALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~e-r~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~ 162 (814)
T COG1201 84 ALNNDIRRRLEEPLRELGIEVAVRHGDTPQSE-KQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALA 162 (814)
T ss_pred HHHHHHHHHHHHHHHHcCCccceecCCCChHH-hhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhh
Confidence 999999999876 4899977777777654 34455667899999999998776643333346899999999999985
Q ss_pred --cCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeec
Q 004098 300 --KWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHS 377 (774)
Q Consensus 300 --~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~ 377 (774)
+.|+...-.+.+|..+ -+ +.|.++||||.. ..+++.++|.-...+..+.......+..+.|...
T Consensus 163 ~sKRG~~Lsl~LeRL~~l---~~---------~~qRIGLSATV~--~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p 228 (814)
T COG1201 163 ESKRGVQLALSLERLREL---AG---------DFQRIGLSATVG--PPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISP 228 (814)
T ss_pred ccccchhhhhhHHHHHhh---Cc---------ccEEEeehhccC--CHHHHHHHhcCCCCceEEEEcccCCcceEEEEec
Confidence 5786544444444322 21 689999999986 4567788887664233333333344444444432
Q ss_pred CCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhh
Q 004098 378 KTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSV 457 (774)
Q Consensus 378 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (774)
....... ......+
T Consensus 229 ~~~~~~~-~~~~~~~----------------------------------------------------------------- 242 (814)
T COG1201 229 VEDLIYD-EELWAAL----------------------------------------------------------------- 242 (814)
T ss_pred CCccccc-cchhHHH-----------------------------------------------------------------
Confidence 2211000 0000000
Q ss_pred hhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCC-
Q 004098 458 EFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG- 536 (774)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g- 536 (774)
...+.++++ ....+|||+|||..++.++..|++.+
T Consensus 243 -----------------------------------------~~~i~~~v~---~~~ttLIF~NTR~~aE~l~~~L~~~~~ 278 (814)
T COG1201 243 -----------------------------------------YERIAELVK---KHRTTLIFTNTRSGAERLAFRLKKLGP 278 (814)
T ss_pred -----------------------------------------HHHHHHHHh---hcCcEEEEEeChHHHHHHHHHHHHhcC
Confidence 001111111 23479999999999999999999986
Q ss_pred CceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccc-cCCCcceEEEE
Q 004098 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAG-RDGHLADCVLY 615 (774)
Q Consensus 537 ~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaG-R~G~~g~~il~ 615 (774)
..+..+||.++.++|..+.++|++|+++++|||+.++.|||+.+|+.||||+.|.++..++||+||+| |.|..+..+++
T Consensus 279 ~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii 358 (814)
T COG1201 279 DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIII 358 (814)
T ss_pred CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999 67788888887
Q ss_pred ee
Q 004098 616 AN 617 (774)
Q Consensus 616 ~~ 617 (774)
..
T Consensus 359 ~~ 360 (814)
T COG1201 359 AE 360 (814)
T ss_pred ec
Confidence 54
No 45
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=2.4e-41 Score=360.52 Aligned_cols=331 Identities=19% Similarity=0.225 Sum_probs=261.8
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc------cCCeEEEEccchHHHHHHH
Q 004098 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQC 230 (774)
Q Consensus 157 ~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~------~~~~~LVvsPt~~L~~qq~ 230 (774)
+...+..-|+. -+|..|+++|..|||.++.+-|+||.+..|+|||++|.+.++. .....+||+|||+|+.|+.
T Consensus 32 l~r~vl~glrr-n~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~ 110 (980)
T KOG4284|consen 32 LWREVLLGLRR-NAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIK 110 (980)
T ss_pred HHHHHHHHHHh-hcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHH
Confidence 44456667774 4999999999999999999999999999999999999888874 3678999999999999999
Q ss_pred HHHHhc-----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCc
Q 004098 231 SKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF 305 (774)
Q Consensus 231 ~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~f 305 (774)
..+.+. |.++..+.||..-.....+ -+.++|+|+||+++..+++ .+.++...++++|+||||.+.+-+. |
T Consensus 111 ~tv~~v~~sf~g~~csvfIGGT~~~~d~~r--lk~~rIvIGtPGRi~qL~e--l~~~n~s~vrlfVLDEADkL~~t~s-f 185 (980)
T KOG4284|consen 111 ETVRKVAPSFTGARCSVFIGGTAHKLDLIR--LKQTRIVIGTPGRIAQLVE--LGAMNMSHVRLFVLDEADKLMDTES-F 185 (980)
T ss_pred HHHHHhcccccCcceEEEecCchhhhhhhh--hhhceEEecCchHHHHHHH--hcCCCccceeEEEeccHHhhhchhh-H
Confidence 888875 5567677777665433333 3457899999999999888 7778889999999999999998664 8
Q ss_pred HHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEe------ecCC
Q 004098 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVK------HSKT 379 (774)
Q Consensus 306 r~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~------~~~~ 379 (774)
+.++..| +..+|...|++++|||-+...-+.+.+.+. ++.++......+.+ +.++ ....
T Consensus 186 q~~In~i-----------i~slP~~rQv~a~SATYp~nLdn~Lsk~mr---dp~lVr~n~~d~~L-~GikQyv~~~~s~n 250 (980)
T KOG4284|consen 186 QDDINII-----------INSLPQIRQVAAFSATYPRNLDNLLSKFMR---DPALVRFNADDVQL-FGIKQYVVAKCSPN 250 (980)
T ss_pred HHHHHHH-----------HHhcchhheeeEEeccCchhHHHHHHHHhc---ccceeecccCCcee-echhheeeeccCCc
Confidence 8888777 455666899999999999988887777774 33333322222211 1111 0000
Q ss_pred ccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhh
Q 004098 380 SSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEF 459 (774)
Q Consensus 380 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (774)
.....+..
T Consensus 251 nsveemrl------------------------------------------------------------------------ 258 (980)
T KOG4284|consen 251 NSVEEMRL------------------------------------------------------------------------ 258 (980)
T ss_pred chHHHHHH------------------------------------------------------------------------
Confidence 00000000
Q ss_pred hhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCce
Q 004098 460 LENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539 (774)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~ 539 (774)
|.+. |..+...++-..+||||+....|+-++.+|...|+.|
T Consensus 259 --------------------------------------klq~-L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~ 299 (980)
T KOG4284|consen 259 --------------------------------------KLQK-LTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDV 299 (980)
T ss_pred --------------------------------------HHHH-HHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCe
Confidence 1111 1112222355579999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCC
Q 004098 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619 (774)
Q Consensus 540 ~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~ 619 (774)
.++.|.|++.+|..+++.++.=.++|||+|+..+||||-++|++|||.|.|.+.+.|.||||||||.|..|.+++|+...
T Consensus 300 ~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 300 TFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred EEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998643
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=5.5e-40 Score=388.40 Aligned_cols=314 Identities=20% Similarity=0.219 Sum_probs=235.7
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEecCCCchHHHHHHhhh---ccCCeEEEEccchHHHHH
Q 004098 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAH------HDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHD 228 (774)
Q Consensus 158 ~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g------~d~lv~apTGsGKTl~~~lpal---~~~~~~LVvsPt~~L~~q 228 (774)
...+...+.+.|+| +|||+|.+||+.++++ +|.++++|||+|||++|++|++ ..++.++|++||++|+.|
T Consensus 437 ~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q 515 (926)
T TIGR00580 437 DLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQ 515 (926)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHH
Confidence 34455566668899 4999999999999974 7999999999999999998876 468899999999999999
Q ss_pred HHHHHHhc----CCcEEEEcCCCChHH---HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccC
Q 004098 229 QCSKLSKH----GVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKW 301 (774)
Q Consensus 229 q~~~l~~~----gi~~~~l~~~~~~~~---~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~ 301 (774)
+++.++++ ++++..++++....+ ....+..+.++|+|+||..+ .+.+.+.++++|||||+|++
T Consensus 516 ~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-------~~~v~f~~L~llVIDEahrf--- 585 (926)
T TIGR00580 516 HFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-------QKDVKFKDLGLLIIDEEQRF--- 585 (926)
T ss_pred HHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-------hCCCCcccCCEEEeeccccc---
Confidence 99998873 677788877665432 23344567799999999533 22335678999999999995
Q ss_pred CCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEE-ccCCCCCcEEEEeecCCc
Q 004098 302 GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVL-TSFFRPNLRFSVKHSKTS 380 (774)
Q Consensus 302 g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~-~~~~r~~l~~~v~~~~~~ 380 (774)
|...+..+. .++.++++++||||+.+....... .++. ++.++. ....|.++...+.....
T Consensus 586 gv~~~~~L~---------------~~~~~~~vL~~SATpiprtl~~~l--~g~~-d~s~I~~~p~~R~~V~t~v~~~~~- 646 (926)
T TIGR00580 586 GVKQKEKLK---------------ELRTSVDVLTLSATPIPRTLHMSM--SGIR-DLSIIATPPEDRLPVRTFVMEYDP- 646 (926)
T ss_pred chhHHHHHH---------------hcCCCCCEEEEecCCCHHHHHHHH--hcCC-CcEEEecCCCCccceEEEEEecCH-
Confidence 422222221 122378999999999887765432 3333 222222 22223333222211000
Q ss_pred cchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhh
Q 004098 381 SRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFL 460 (774)
Q Consensus 381 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 460 (774)
..+..
T Consensus 647 ------~~i~~--------------------------------------------------------------------- 651 (926)
T TIGR00580 647 ------ELVRE--------------------------------------------------------------------- 651 (926)
T ss_pred ------HHHHH---------------------------------------------------------------------
Confidence 00000
Q ss_pred hcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhC--CCc
Q 004098 461 ENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF--GVK 538 (774)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~--g~~ 538 (774)
.+. .+...+++++|||++++.++.+++.|.+. +++
T Consensus 652 ----------------------------------------~i~---~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~ 688 (926)
T TIGR00580 652 ----------------------------------------AIR---RELLRGGQVFYVHNRIESIEKLATQLRELVPEAR 688 (926)
T ss_pred ----------------------------------------HHH---HHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCe
Confidence 000 01114568999999999999999999984 789
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCC-CHHHHHHHhhccccCCCcceEEEEee
Q 004098 539 AAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ-SLEAYYQEAGRAGRDGHLADCVLYAN 617 (774)
Q Consensus 539 ~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~-s~~~y~Qr~GRaGR~G~~g~~il~~~ 617 (774)
+..+||+|++++|.+++++|++|+++|||||+++++|||+|+|++||+++.|. +...|+||+||+||.|+.|.|++++.
T Consensus 689 v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~ 768 (926)
T TIGR00580 689 IAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYP 768 (926)
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999975 68899999999999999999999986
Q ss_pred CC
Q 004098 618 LS 619 (774)
Q Consensus 618 ~~ 619 (774)
..
T Consensus 769 ~~ 770 (926)
T TIGR00580 769 HQ 770 (926)
T ss_pred Cc
Confidence 44
No 47
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-41 Score=362.26 Aligned_cols=342 Identities=19% Similarity=0.237 Sum_probs=252.1
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc-----------CCeEEEEccc
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT-----------GKVVVVISPL 222 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~-----------~~~~LVvsPt 222 (774)
.+.....+...+. ..||..|+|+|.+|||.++.++|+++++|||+|||++|.+|++.+ +-+++|++||
T Consensus 140 ~~~~~~~ll~nl~-~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~pt 218 (593)
T KOG0344|consen 140 DYSMNKRLLENLQ-ELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPT 218 (593)
T ss_pred hhhhcHHHHHhHh-hCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecch
Confidence 3445666777777 569999999999999999999999999999999999999999852 4589999999
Q ss_pred hHHHHHHHHHHHhcCCc------EEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 004098 223 ISLMHDQCSKLSKHGVT------ACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVH 296 (774)
Q Consensus 223 ~~L~~qq~~~l~~~gi~------~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH 296 (774)
++|++|.+.++.++.+. +..+.................++|++.||-++..++..-.-.+++..|.++|+||||
T Consensus 219 reLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD 298 (593)
T KOG0344|consen 219 RELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD 298 (593)
T ss_pred HHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH
Confidence 99999999999998633 222222211112122223345799999999988776621122567889999999999
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEee
Q 004098 297 CVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376 (774)
Q Consensus 297 ~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~ 376 (774)
.+.+. ..|..+...|-..+.. +++.+-+||||.+..+.+-+...+.. ...+. |..
T Consensus 299 ~lfe~-~~f~~Qla~I~sac~s----------~~i~~a~FSat~~~~VEE~~~~i~~~--~~~vi------------vg~ 353 (593)
T KOG0344|consen 299 LLFEP-EFFVEQLADIYSACQS----------PDIRVALFSATISVYVEEWAELIKSD--LKRVI------------VGL 353 (593)
T ss_pred hhhCh-hhHHHHHHHHHHHhcC----------cchhhhhhhccccHHHHHHHHHhhcc--ceeEE------------Eec
Confidence 99876 1266666665443332 37888899999988876633333221 11111 111
Q ss_pred cCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchh
Q 004098 377 SKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMS 456 (774)
Q Consensus 377 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (774)
.... ...+.
T Consensus 354 ~~sa--------~~~V~--------------------------------------------------------------- 362 (593)
T KOG0344|consen 354 RNSA--------NETVD--------------------------------------------------------------- 362 (593)
T ss_pred chhH--------hhhhh---------------------------------------------------------------
Confidence 0000 00000
Q ss_pred hhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHH-HhC
Q 004098 457 VEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYL-CGF 535 (774)
Q Consensus 457 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L-~~~ 535 (774)
+-.+-| .....|...+.+++... -..|++||+++.+.|.+|...| .-.
T Consensus 363 ----------QelvF~--------------------gse~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~~~~ 411 (593)
T KOG0344|consen 363 ----------QELVFC--------------------GSEKGKLLALRQLVASG-FKPPVLIFVQSKERAKQLFEELEIYD 411 (593)
T ss_pred ----------hhheee--------------------ecchhHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhhhcc
Confidence 000000 01112222223333222 3458999999999999999999 677
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEE
Q 004098 536 GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (774)
Q Consensus 536 g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~ 615 (774)
++.+..+||..++.+|..++++|+.|++.||+||++++||||+.+|+.||+||+|.+..+|+||+||+||+|+.|.+++|
T Consensus 412 ~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitf 491 (593)
T KOG0344|consen 412 NINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITF 491 (593)
T ss_pred CcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCc
Q 004098 616 ANLSSMPT 623 (774)
Q Consensus 616 ~~~~~~~~ 623 (774)
|+..+.+.
T Consensus 492 ytd~d~~~ 499 (593)
T KOG0344|consen 492 YTDQDMPR 499 (593)
T ss_pred eccccchh
Confidence 99877654
No 48
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-41 Score=346.75 Aligned_cols=331 Identities=20% Similarity=0.326 Sum_probs=264.4
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc------CCeEEEEccchHHHHHH
Q 004098 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLISLMHDQ 229 (774)
Q Consensus 156 ~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~------~~~~LVvsPt~~L~~qq 229 (774)
.+.+++..-+- .+||.+|+.+|+.||..++.|.|+++.+++|+|||.+|.++++.. ...+|+++|+++|+.|.
T Consensus 32 ~L~e~LLrgiy-~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi 110 (397)
T KOG0327|consen 32 NLKESLLRGIY-AYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQI 110 (397)
T ss_pred CCCHHHHhHHH-hhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHH
Confidence 44555666665 579999999999999999999999999999999999999999864 56899999999999999
Q ss_pred HHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCc
Q 004098 230 CSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF 305 (774)
Q Consensus 230 ~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~f 305 (774)
......+ ++++..+.++.........+....++|++.||+++..++. ...+....+.++|+|||+.++..| |
T Consensus 111 ~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~--~~~l~~~~iKmfvlDEaDEmLs~g--f 186 (397)
T KOG0327|consen 111 QKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLN--RGSLSTDGIKMFVLDEADEMLSRG--F 186 (397)
T ss_pred HHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhc--cccccccceeEEeecchHhhhccc--h
Confidence 9887775 3566666666665544455556668999999999998887 456677889999999999999888 9
Q ss_pred HHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhh
Q 004098 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASY 385 (774)
Q Consensus 306 r~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~ 385 (774)
+..+..| +..+|+++|++++|||.+.++..--.+++ +.++...++.....
T Consensus 187 kdqI~~i-----------f~~lp~~vQv~l~SAT~p~~vl~vt~~f~--------------~~pv~i~vkk~~lt----- 236 (397)
T KOG0327|consen 187 KDQIYDI-----------FQELPSDVQVVLLSATMPSDVLEVTKKFM--------------REPVRILVKKDELT----- 236 (397)
T ss_pred HHHHHHH-----------HHHcCcchhheeecccCcHHHHHHHHHhc--------------cCceEEEecchhhh-----
Confidence 9999988 45567799999999999998877443333 44455554432100
Q ss_pred hHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCC
Q 004098 386 KKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSV 465 (774)
Q Consensus 386 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 465 (774)
+.-+ ++ + |+.
T Consensus 237 ---l~gi-------------kq--------------------------------~------------------~i~---- 246 (397)
T KOG0327|consen 237 ---LEGI-------------KQ--------------------------------F------------------YIN---- 246 (397)
T ss_pred ---hhhe-------------ee--------------------------------e------------------eee----
Confidence 0000 00 0 000
Q ss_pred cccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCC
Q 004098 466 DDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNAS 545 (774)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~ 545 (774)
....+|..-+.++.. .....+|||+|++.++.+...|...++.+..+|+.
T Consensus 247 ---------------------------v~k~~k~~~l~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d 296 (397)
T KOG0327|consen 247 ---------------------------VEKEEKLDTLCDLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGD 296 (397)
T ss_pred ---------------------------ccccccccHHHHHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecc
Confidence 000012222222222 45679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCC
Q 004098 546 LPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (774)
Q Consensus 546 l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~ 621 (774)
|.+.+|..++++|++|..+|||.|+.+++|||+.++..||+|++|...++|+||+||+||.|++|.++.++...+.
T Consensus 297 ~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~ 372 (397)
T KOG0327|consen 297 MEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDV 372 (397)
T ss_pred cchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875544
No 49
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.9e-40 Score=390.07 Aligned_cols=331 Identities=22% Similarity=0.294 Sum_probs=240.6
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEecCCCchHHHHHHhhhc----cCCeEEEEccchHHHHHHH
Q 004098 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSA-WLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQC 230 (774)
Q Consensus 156 ~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~-il~g~d~lv~apTGsGKTl~~~lpal~----~~~~~LVvsPt~~L~~qq~ 230 (774)
++++.+.+.|++ .|+..|+|+|.++++. +++|+|+++++|||+|||++|.+|++. .++++|||+|+++|+.|++
T Consensus 7 ~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~ 85 (720)
T PRK00254 7 RVDERIKRVLKE-RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKY 85 (720)
T ss_pred CCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHH
Confidence 466788899985 7999999999999986 788999999999999999999999863 4789999999999999999
Q ss_pred HHHHh---cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHH
Q 004098 231 SKLSK---HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRP 307 (774)
Q Consensus 231 ~~l~~---~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~ 307 (774)
+.+.. +|+++..++|+..... .+ .+.++|+|+|||++..++. .+...+.++++|||||+|.+.+++ +.+
T Consensus 86 ~~~~~~~~~g~~v~~~~Gd~~~~~---~~-~~~~~IiV~Tpe~~~~ll~--~~~~~l~~l~lvViDE~H~l~~~~--rg~ 157 (720)
T PRK00254 86 REFKDWEKLGLRVAMTTGDYDSTD---EW-LGKYDIIIATAEKFDSLLR--HGSSWIKDVKLVVADEIHLIGSYD--RGA 157 (720)
T ss_pred HHHHHHhhcCCEEEEEeCCCCCch---hh-hccCCEEEEcHHHHHHHHh--CCchhhhcCCEEEEcCcCccCCcc--chH
Confidence 88875 4788888888765432 12 2457999999999987765 222345789999999999998766 455
Q ss_pred HHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCC-CcEEEEeecCCccchhhh
Q 004098 308 DYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP-NLRFSVKHSKTSSRASYK 386 (774)
Q Consensus 308 ~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~-~l~~~v~~~~~~~~~~~~ 386 (774)
.+..+ ...+ +.+.|+++||||++. ..++..+|+... +. ...|| ++...+...... +
T Consensus 158 ~le~i---l~~l--------~~~~qiI~lSATl~n--~~~la~wl~~~~----~~-~~~rpv~l~~~~~~~~~~----~- 214 (720)
T PRK00254 158 TLEMI---LTHM--------LGRAQILGLSATVGN--AEELAEWLNAEL----VV-SDWRPVKLRKGVFYQGFL----F- 214 (720)
T ss_pred HHHHH---HHhc--------CcCCcEEEEEccCCC--HHHHHHHhCCcc----cc-CCCCCCcceeeEecCCee----e-
Confidence 55444 2222 237899999999974 467778886431 11 12222 111111100000 0
Q ss_pred HhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCc
Q 004098 387 KDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVD 466 (774)
Q Consensus 387 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 466 (774)
+... . . ..+
T Consensus 215 ------------------------------------------------------~~~~-----~-~----~~~------- 223 (720)
T PRK00254 215 ------------------------------------------------------WEDG-----K-I----ERF------- 223 (720)
T ss_pred ------------------------------------------------------ccCc-----c-h----hcc-------
Confidence 0000 0 0 000
Q ss_pred ccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhC-----------
Q 004098 467 DWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF----------- 535 (774)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~----------- 535 (774)
.......+.+.+. .+.++||||+||+.|+.++..|...
T Consensus 224 ----------------------------~~~~~~~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~ 272 (720)
T PRK00254 224 ----------------------------PNSWESLVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELR 272 (720)
T ss_pred ----------------------------hHHHHHHHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHH
Confidence 0000001111111 3568999999999999888776421
Q ss_pred ----------------------CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEE-------
Q 004098 536 ----------------------GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH------- 586 (774)
Q Consensus 536 ----------------------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~------- 586 (774)
...+..|||+|++++|..+++.|++|.++|||||+++++|||+|.+++||+
T Consensus 273 ~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~ 352 (720)
T PRK00254 273 ALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSN 352 (720)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCC
Confidence 235899999999999999999999999999999999999999999999994
Q ss_pred eCCCC-CHHHHHHHhhccccCC--CcceEEEEeeCCC
Q 004098 587 YGWPQ-SLEAYYQEAGRAGRDG--HLADCVLYANLSS 620 (774)
Q Consensus 587 ~d~p~-s~~~y~Qr~GRaGR~G--~~g~~il~~~~~~ 620 (774)
|+.|. ++.+|+||+|||||.| ..|.+++++...+
T Consensus 353 ~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 353 FGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred CCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 55544 5779999999999975 6799999986544
No 50
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.1e-40 Score=408.21 Aligned_cols=326 Identities=20% Similarity=0.236 Sum_probs=238.8
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHh
Q 004098 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK 235 (774)
Q Consensus 159 ~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~ 235 (774)
.+..+.+++.+|| +|+++|.++++.+++|+|++++||||+|||++++++++. .+.++|||+||++|+.|+++.+..
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~ 144 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIES 144 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHH
Confidence 3566778888999 699999999999999999999999999999988877764 367999999999999999999988
Q ss_pred c------CCcEEEEcCCCChHHHH---HHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCC---
Q 004098 236 H------GVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH--- 303 (774)
Q Consensus 236 ~------gi~~~~l~~~~~~~~~~---~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~--- 303 (774)
+ ++.+..++|+.+..... ..+..+.++|+|+||++|.+.+.. .. ..++++|||||||+|++|||
T Consensus 145 l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~---l~-~~~i~~iVVDEAD~ml~~~knid 220 (1638)
T PRK14701 145 FCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE---MK-HLKFDFIFVDDVDAFLKASKNID 220 (1638)
T ss_pred HHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH---Hh-hCCCCEEEEECceeccccccccc
Confidence 4 46677888887765432 334566799999999988765542 22 27799999999999999988
Q ss_pred ------CcHHHHHH----HHHH------------HHHhcccccccccCCCC-EEEEeccCCHHHHHHHHHHcCCCCCceE
Q 004098 304 ------DFRPDYRR----LSVL------------RENFGANNLKSLKFDIP-LMALTATATIQVREDILKSLHMSKGTKF 360 (774)
Q Consensus 304 ------~fr~~~~~----l~~l------------~~~~~~~~~~~l~~~~~-il~lTAT~~~~~~~~i~~~L~~~~~~~~ 360 (774)
+|++++.. +..+ ++.+.. .+..++...+ ++.+|||+++. .++...+. .+..
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~~---~~l~ 294 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNK-EIEKIGNKIGCLIVASATGKAK--GDRVKLYR---ELLG 294 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhh-hhhhcCCCccEEEEEecCCCch--hHHHHHhh---cCeE
Confidence 79999975 2110 000000 0111233445 56789998753 23333331 2223
Q ss_pred EEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCC
Q 004098 361 VLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGY 440 (774)
Q Consensus 361 ~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (774)
+...+.++++...+......
T Consensus 295 f~v~~~~~~lr~i~~~yi~~------------------------------------------------------------ 314 (1638)
T PRK14701 295 FEVGSGRSALRNIVDVYLNP------------------------------------------------------------ 314 (1638)
T ss_pred EEecCCCCCCCCcEEEEEEC------------------------------------------------------------
Confidence 33344444333221110000
Q ss_pred CCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeC
Q 004098 441 YDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVP 520 (774)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~ 520 (774)
. ......++.++... +..+||||+
T Consensus 315 -----------------------------------------------------~-~~~k~~L~~ll~~~--g~~gIVF~~ 338 (1638)
T PRK14701 315 -----------------------------------------------------E-KIIKEHVRELLKKL--GKGGLIFVP 338 (1638)
T ss_pred -----------------------------------------------------C-HHHHHHHHHHHHhC--CCCeEEEEe
Confidence 0 00011233333332 357999999
Q ss_pred chHH---HHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec----ccccCcccCC-cceEEEeCCCC-
Q 004098 521 TRKE---TLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI----AFGMGIDKLN-VRRIIHYGWPQ- 591 (774)
Q Consensus 521 sr~~---~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~----a~~~GIDip~-V~~VI~~d~p~- 591 (774)
|++. |+.++++|...|+++..+||+ |..++++|++|+++|||||+ +++||||+|+ |++|||||+|+
T Consensus 339 t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~ 413 (1638)
T PRK14701 339 IDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKF 413 (1638)
T ss_pred ccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCC
Confidence 9886 589999999999999999995 88999999999999999994 8899999999 99999999999
Q ss_pred --CHHHHHHHh-------------hccccCCCcceEEEEe
Q 004098 592 --SLEAYYQEA-------------GRAGRDGHLADCVLYA 616 (774)
Q Consensus 592 --s~~~y~Qr~-------------GRaGR~G~~g~~il~~ 616 (774)
+++.|+|.. |||||+|.++.+++.+
T Consensus 414 ~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~ 453 (1638)
T PRK14701 414 RFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDV 453 (1638)
T ss_pred CcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHh
Confidence 999999988 9999999998886443
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=8.3e-39 Score=374.23 Aligned_cols=310 Identities=18% Similarity=0.221 Sum_probs=229.2
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHH
Q 004098 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAH------HDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQC 230 (774)
Q Consensus 160 ~l~~~L~~~~g~~~~r~~Q~~ai~~il~g------~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~ 230 (774)
.+.+.+...++| .||++|.+||+.++++ .|.|+++|||||||++|++|++. .+..++|++||++|+.|++
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~ 327 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHY 327 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHH
Confidence 334445556788 5999999999999976 48999999999999999999864 5779999999999999999
Q ss_pred HHHHhc----CCcEEEEcCCCChHH---HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCC
Q 004098 231 SKLSKH----GVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303 (774)
Q Consensus 231 ~~l~~~----gi~~~~l~~~~~~~~---~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~ 303 (774)
+.++++ |+++..++|+..... ....+..+.++|+|+||+.+.. ...+.+++++||||+|++ |.
T Consensus 328 ~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------~v~~~~l~lvVIDE~Hrf---g~ 397 (681)
T PRK10917 328 ENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-------DVEFHNLGLVIIDEQHRF---GV 397 (681)
T ss_pred HHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-------cchhcccceEEEechhhh---hH
Confidence 998874 689999999887533 3334556789999999987643 234578999999999986 32
Q ss_pred CcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEE-ccCCCCCcEEEEeecCCccc
Q 004098 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVL-TSFFRPNLRFSVKHSKTSSR 382 (774)
Q Consensus 304 ~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~-~~~~r~~l~~~v~~~~~~~~ 382 (774)
..+..+. .. ...+++++|||||.+...... ..+.. ....+. ....+.++...+....
T Consensus 398 ~qr~~l~------~~---------~~~~~iL~~SATp~prtl~~~--~~g~~-~~s~i~~~p~~r~~i~~~~~~~~---- 455 (681)
T PRK10917 398 EQRLALR------EK---------GENPHVLVMTATPIPRTLAMT--AYGDL-DVSVIDELPPGRKPITTVVIPDS---- 455 (681)
T ss_pred HHHHHHH------hc---------CCCCCEEEEeCCCCHHHHHHH--HcCCC-ceEEEecCCCCCCCcEEEEeCcc----
Confidence 2333222 11 125789999999987665422 22221 111111 1112223322221100
Q ss_pred hhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhc
Q 004098 383 ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (774)
Q Consensus 383 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (774)
T Consensus 456 -------------------------------------------------------------------------------- 455 (681)
T PRK10917 456 -------------------------------------------------------------------------------- 455 (681)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCC-CCCCcEEEEeCch--------HHHHHHHHHHH
Q 004098 463 DSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-LEDGLTIIYVPTR--------KETLSIAKYLC 533 (774)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~-~~~~~~IIF~~sr--------~~~~~l~~~L~ 533 (774)
+...+++.+.+. ..+.+++|||++. ..++.+++.|.
T Consensus 456 -----------------------------------~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~ 500 (681)
T PRK10917 456 -----------------------------------RRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQ 500 (681)
T ss_pred -----------------------------------cHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHH
Confidence 000111111111 1456899999854 45677888887
Q ss_pred hC--CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCC-CHHHHHHHhhccccCCCcc
Q 004098 534 GF--GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ-SLEAYYQEAGRAGRDGHLA 610 (774)
Q Consensus 534 ~~--g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~-s~~~y~Qr~GRaGR~G~~g 610 (774)
+. ++++..+||+|++++|++++++|++|+++|||||+++++|||+|++++||+|+.|. ....|.|++||+||.|..|
T Consensus 501 ~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g 580 (681)
T PRK10917 501 EAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQS 580 (681)
T ss_pred HHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCce
Confidence 65 57899999999999999999999999999999999999999999999999999997 5788999999999999999
Q ss_pred eEEEEee
Q 004098 611 DCVLYAN 617 (774)
Q Consensus 611 ~~il~~~ 617 (774)
.|+++++
T Consensus 581 ~~ill~~ 587 (681)
T PRK10917 581 YCVLLYK 587 (681)
T ss_pred EEEEEEC
Confidence 9999985
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.8e-38 Score=383.26 Aligned_cols=311 Identities=22% Similarity=0.259 Sum_probs=228.9
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEecCCCchHHHHHHhhh---ccCCeEEEEccchHHHHHHH
Q 004098 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAH------HDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQC 230 (774)
Q Consensus 160 ~l~~~L~~~~g~~~~r~~Q~~ai~~il~g------~d~lv~apTGsGKTl~~~lpal---~~~~~~LVvsPt~~L~~qq~ 230 (774)
.....+...|+| .||+.|.+||+.++++ +|+++++|||+|||.+|+.+++ ..++.++||+||++|+.|++
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~ 666 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHY 666 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHH
Confidence 344445557889 6999999999999986 8999999999999999887764 46889999999999999999
Q ss_pred HHHHhc----CCcEEEEcCCCChHHHHH---HHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCC
Q 004098 231 SKLSKH----GVTACFLGSGQPDNKVEQ---KALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303 (774)
Q Consensus 231 ~~l~~~----gi~~~~l~~~~~~~~~~~---~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~ 303 (774)
+.+.+. ++.+..++++.+...... .+..+.++|+|+||+.+. ..+.+.++++|||||+|++ |.
T Consensus 667 ~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-------~~v~~~~L~lLVIDEahrf---G~ 736 (1147)
T PRK10689 667 DNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-------SDVKWKDLGLLIVDEEHRF---GV 736 (1147)
T ss_pred HHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-------CCCCHhhCCEEEEechhhc---ch
Confidence 998863 567777777766543322 233467999999997542 2234567999999999996 42
Q ss_pred CcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEc-cCCCCCcEEEEeecCCccc
Q 004098 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSVKHSKTSSR 382 (774)
Q Consensus 304 ~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~-~~~r~~l~~~v~~~~~~~~ 382 (774)
.+. ..+ +.++.++|+++||||+.+.+.......+ . ++.++.. ...+.++...+....
T Consensus 737 ~~~---e~l------------k~l~~~~qvLl~SATpiprtl~l~~~gl--~-d~~~I~~~p~~r~~v~~~~~~~~---- 794 (1147)
T PRK10689 737 RHK---ERI------------KAMRADVDILTLTATPIPRTLNMAMSGM--R-DLSIIATPPARRLAVKTFVREYD---- 794 (1147)
T ss_pred hHH---HHH------------HhcCCCCcEEEEcCCCCHHHHHHHHhhC--C-CcEEEecCCCCCCCceEEEEecC----
Confidence 222 222 1223489999999999988876544333 2 2222221 111222211111000
Q ss_pred hhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhc
Q 004098 383 ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (774)
Q Consensus 383 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (774)
T Consensus 795 -------------------------------------------------------------------------------- 794 (1147)
T PRK10689 795 -------------------------------------------------------------------------------- 794 (1147)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhC--CCceE
Q 004098 463 DSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF--GVKAA 540 (774)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~--g~~~~ 540 (774)
........+.+...+++++|||++++.++.+++.|.+. ++++.
T Consensus 795 -----------------------------------~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~ 839 (1147)
T PRK10689 795 -----------------------------------SLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIA 839 (1147)
T ss_pred -----------------------------------cHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEE
Confidence 00000011111224578999999999999999999987 78999
Q ss_pred EecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCC-CCHHHHHHHhhccccCCCcceEEEEeeC
Q 004098 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWP-QSLEAYYQEAGRAGRDGHLADCVLYANL 618 (774)
Q Consensus 541 ~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p-~s~~~y~Qr~GRaGR~G~~g~~il~~~~ 618 (774)
.+||+|++++|.+++.+|++|+++|||||+++++|||+|+|++||..+.. .++..|+||+||+||.|+.|.|++++..
T Consensus 840 ~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 840 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred EEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 99999999999999999999999999999999999999999999944332 2456799999999999999999999854
No 53
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-40 Score=340.65 Aligned_cols=336 Identities=22% Similarity=0.308 Sum_probs=270.8
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc-------CCeEEEEccchHHHHH
Q 004098 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT-------GKVVVVISPLISLMHD 228 (774)
Q Consensus 156 ~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~-------~~~~LVvsPt~~L~~q 228 (774)
.+...+..++.+ -||..|+|+|+..||.+|+++|++..+-||||||.||++|++.+ +-++++++||++|+.|
T Consensus 27 gL~~~v~raI~k-kg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~q 105 (529)
T KOG0337|consen 27 GLDYKVLRAIHK-KGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQ 105 (529)
T ss_pred CCCHHHHHHHHH-hhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHH
Confidence 455566666663 49999999999999999999999999999999999999999863 5699999999999999
Q ss_pred HHHHHHhcC----CcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCC
Q 004098 229 QCSKLSKHG----VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (774)
Q Consensus 229 q~~~l~~~g----i~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~ 304 (774)
..+..+.+| .+..++.++....+ +...+..++|||++||+++..+.. .-.+.++.+.|||+|||+++.++|
T Consensus 106 tlkvvkdlgrgt~lr~s~~~ggD~~ee-qf~~l~~npDii~ATpgr~~h~~v--em~l~l~sveyVVfdEadrlfemg-- 180 (529)
T KOG0337|consen 106 TLKVVKDLGRGTKLRQSLLVGGDSIEE-QFILLNENPDIIIATPGRLLHLGV--EMTLTLSSVEYVVFDEADRLFEMG-- 180 (529)
T ss_pred HHHHHHHhccccchhhhhhcccchHHH-HHHHhccCCCEEEecCceeeeeeh--heeccccceeeeeehhhhHHHhhh--
Confidence 999998874 56676777766544 455667778999999999987655 223667889999999999999999
Q ss_pred cHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchh
Q 004098 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRAS 384 (774)
Q Consensus 305 fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~ 384 (774)
|.+.+..+ +..+|.+.|+++||||.+....+...+-| . +|+...+.. +..
T Consensus 181 fqeql~e~-----------l~rl~~~~QTllfSatlp~~lv~fakaGl--~------------~p~lVRldv-etk---- 230 (529)
T KOG0337|consen 181 FQEQLHEI-----------LSRLPESRQTLLFSATLPRDLVDFAKAGL--V------------PPVLVRLDV-ETK---- 230 (529)
T ss_pred hHHHHHHH-----------HHhCCCcceEEEEeccCchhhHHHHHccC--C------------CCceEEeeh-hhh----
Confidence 88888877 44556688999999999987666443333 1 222222110 000
Q ss_pred hhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCC
Q 004098 385 YKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDS 464 (774)
Q Consensus 385 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (774)
+...++ .
T Consensus 231 ----ise~lk--------------------------------------------------------------~------- 237 (529)
T KOG0337|consen 231 ----ISELLK--------------------------------------------------------------V------- 237 (529)
T ss_pred ----cchhhh--------------------------------------------------------------h-------
Confidence 000000 0
Q ss_pred CcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecC
Q 004098 465 VDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544 (774)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~ 544 (774)
.+......+|...++.++.....+.++||||.|+..++.+...|...|+.+..++|
T Consensus 238 ------------------------~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iys 293 (529)
T KOG0337|consen 238 ------------------------RFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYS 293 (529)
T ss_pred ------------------------heeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCcccccc
Confidence 01112233456667777777767779999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCCCcc
Q 004098 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL 624 (774)
Q Consensus 545 ~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~~~ 624 (774)
.|++..|.....+|..++..+||.|++++||+|+|-.+.||+||+|.+..-|+||+||+.|+|+.|.++.++...+.+++
T Consensus 294 slD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl 373 (529)
T KOG0337|consen 294 SLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYL 373 (529)
T ss_pred ccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887776654
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=8.4e-39 Score=387.15 Aligned_cols=313 Identities=23% Similarity=0.278 Sum_probs=218.9
Q ss_pred EEecCCCchHHHHHHhhhcc----------------CCeEEEEccchHHHHHHHHHHHh----------------cCCcE
Q 004098 193 VLAATGSGKSLCFQIPALLT----------------GKVVVVISPLISLMHDQCSKLSK----------------HGVTA 240 (774)
Q Consensus 193 v~apTGsGKTl~~~lpal~~----------------~~~~LVvsPt~~L~~qq~~~l~~----------------~gi~~ 240 (774)
|++|||||||+||.||++.+ +.++|||+||++|+.|+.+.|+. .++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999998631 35899999999999999998863 25777
Q ss_pred EEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc--CCCCcHHHHHHHHHHHHH
Q 004098 241 CFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK--WGHDFRPDYRRLSVLREN 318 (774)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~--~g~~fr~~~~~l~~l~~~ 318 (774)
...+|+.+..+ +.+.....++|||+|||+|..++.. +....++++++|||||+|.+.+ +|.++...+.+|..+.
T Consensus 81 ~vrtGDt~~~e-R~rll~~ppdILVTTPEsL~~LLts-k~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~-- 156 (1490)
T PRK09751 81 GIRTGDTPAQE-RSKLTRNPPDILITTPESLYLMLTS-RARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL-- 156 (1490)
T ss_pred EEEECCCCHHH-HHHHhcCCCCEEEecHHHHHHHHhh-hhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC--
Confidence 77887776644 3345556789999999999887653 2233578899999999999974 7877888888876542
Q ss_pred hcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCC-CcEEEEeecCCccchhhhHhHHHHHHHHH
Q 004098 319 FGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP-NLRFSVKHSKTSSRASYKKDFCQLIDIYT 397 (774)
Q Consensus 319 ~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~-~l~~~v~~~~~~~~~~~~~~l~~l~~~~~ 397 (774)
+.+.|+|+||||..+ .+++.++|+......++.....++ ++.+.+.. ... ..+.. .
T Consensus 157 ---------~~~~QrIgLSATI~n--~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~-~d~---------~~~~~--~ 213 (1490)
T PRK09751 157 ---------HTSAQRIGLSATVRS--ASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPV-ANM---------DDVSS--V 213 (1490)
T ss_pred ---------CCCCeEEEEEeeCCC--HHHHHHHhcCCCCEEEECCCCCcccceEEEEec-Cch---------hhccc--c
Confidence 236899999999976 367888887543333433222222 22222111 000 00000 0
Q ss_pred hhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccC
Q 004098 398 KKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYG 477 (774)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 477 (774)
.. ... ..... . ........
T Consensus 214 ------~~---------------------------------~~~-~~~~~--~-r~~~i~~~------------------ 232 (1490)
T PRK09751 214 ------AS---------------------------------GTG-EDSHA--G-REGSIWPY------------------ 232 (1490)
T ss_pred ------cc---------------------------------ccc-cccch--h-hhhhhhHH------------------
Confidence 00 000 00000 0 00000000
Q ss_pred CCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCC---------------------
Q 004098 478 HSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG--------------------- 536 (774)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g--------------------- 536 (774)
....++.. .....++|||||||+.|+.++..|++..
T Consensus 233 --------------------v~~~il~~---i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (1490)
T PRK09751 233 --------------------IETGILDE---VLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTS 289 (1490)
T ss_pred --------------------HHHHHHHH---HhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhcc
Confidence 00011111 1235689999999999999999997631
Q ss_pred ------------CceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccc
Q 004098 537 ------------VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAG 604 (774)
Q Consensus 537 ------------~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaG 604 (774)
+.+..|||+|++++|..+++.|++|++++||||+++++|||+++|++||+|+.|.++.+|+||+||||
T Consensus 290 ~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAG 369 (1490)
T PRK09751 290 GATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAG 369 (1490)
T ss_pred ccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCC
Confidence 12678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCcceEEEEe
Q 004098 605 RD-GHLADCVLYA 616 (774)
Q Consensus 605 R~-G~~g~~il~~ 616 (774)
|. |..+.++++.
T Consensus 370 R~~gg~s~gli~p 382 (1490)
T PRK09751 370 HQVGGVSKGLFFP 382 (1490)
T ss_pred CCCCCccEEEEEe
Confidence 85 4556666553
No 55
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.8e-38 Score=372.76 Aligned_cols=328 Identities=21% Similarity=0.238 Sum_probs=234.8
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHH
Q 004098 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSK 232 (774)
Q Consensus 156 ~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~ 232 (774)
++++.+.+.+.+ .+|. ++++|.++++.+++++|+++++|||+|||++|.++++. .++++|||+|+++|+.|+++.
T Consensus 7 ~l~~~~~~~~~~-~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~ 84 (674)
T PRK01172 7 GYDDEFLNLFTG-NDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEE 84 (674)
T ss_pred CCCHHHHHHHhh-CCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHH
Confidence 466778888874 4775 99999999999999999999999999999999988764 478999999999999999999
Q ss_pred HHhc---CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHH
Q 004098 233 LSKH---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDY 309 (774)
Q Consensus 233 l~~~---gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~ 309 (774)
+.++ |+.+....++..... .. ...++|+|+|||++..++. .....+.++++|||||||++.+.+ +.+.+
T Consensus 85 ~~~l~~~g~~v~~~~G~~~~~~---~~-~~~~dIiv~Tpek~~~l~~--~~~~~l~~v~lvViDEaH~l~d~~--rg~~l 156 (674)
T PRK01172 85 LSRLRSLGMRVKISIGDYDDPP---DF-IKRYDVVILTSEKADSLIH--HDPYIINDVGLIVADEIHIIGDED--RGPTL 156 (674)
T ss_pred HHHHhhcCCeEEEEeCCCCCCh---hh-hccCCEEEECHHHHHHHHh--CChhHHhhcCEEEEecchhccCCC--ccHHH
Confidence 8764 777777776654322 11 2357999999999887765 223346789999999999998655 45555
Q ss_pred HHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhH
Q 004098 310 RRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDF 389 (774)
Q Consensus 310 ~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l 389 (774)
..+...... ++++.+++++|||++. ..++..+|+.. .+...+...++...+.......
T Consensus 157 e~ll~~~~~--------~~~~~riI~lSATl~n--~~~la~wl~~~----~~~~~~r~vpl~~~i~~~~~~~-------- 214 (674)
T PRK01172 157 ETVLSSARY--------VNPDARILALSATVSN--ANELAQWLNAS----LIKSNFRPVPLKLGILYRKRLI-------- 214 (674)
T ss_pred HHHHHHHHh--------cCcCCcEEEEeCccCC--HHHHHHHhCCC----ccCCCCCCCCeEEEEEecCeee--------
Confidence 554332222 2237899999999964 35677887632 1222222222332222100000
Q ss_pred HHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccc
Q 004098 390 CQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWD 469 (774)
Q Consensus 390 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 469 (774)
....
T Consensus 215 ----------------------------------------------------------------------~~~~------ 218 (674)
T PRK01172 215 ----------------------------------------------------------------------LDGY------ 218 (674)
T ss_pred ----------------------------------------------------------------------eccc------
Confidence 0000
Q ss_pred cccccccCCCCCCCCCCccchhhccccCchhHhhhhccC-CCCCCcEEEEeCchHHHHHHHHHHHhC-------------
Q 004098 470 VACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQE-PLEDGLTIIYVPTRKETLSIAKYLCGF------------- 535 (774)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~-~~~~~~~IIF~~sr~~~~~l~~~L~~~------------- 535 (774)
......+...+.+ ...++++||||++++.++.++..|.+.
T Consensus 219 --------------------------~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~ 272 (674)
T PRK01172 219 --------------------------ERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSEN 272 (674)
T ss_pred --------------------------ccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccc
Confidence 0000000011111 114568999999999999999998653
Q ss_pred ------------CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCC---------CCCHH
Q 004098 536 ------------GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW---------PQSLE 594 (774)
Q Consensus 536 ------------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~---------p~s~~ 594 (774)
...+..+||+|++++|..+++.|++|.++|||||+++++|||+|+.++ |.+|. |.+..
T Consensus 273 ~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~V-II~~~~~~~~~~~~~~s~~ 351 (674)
T PRK01172 273 NNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLV-IVRDITRYGNGGIRYLSNM 351 (674)
T ss_pred cccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEE-EEcCceEeCCCCceeCCHH
Confidence 124788999999999999999999999999999999999999998654 44443 56899
Q ss_pred HHHHHhhccccCCC--cceEEEEeeC
Q 004098 595 AYYQEAGRAGRDGH--LADCVLYANL 618 (774)
Q Consensus 595 ~y~Qr~GRaGR~G~--~g~~il~~~~ 618 (774)
+|.||+|||||.|. .|.+++++..
T Consensus 352 ~~~Qm~GRAGR~g~d~~g~~~i~~~~ 377 (674)
T PRK01172 352 EIKQMIGRAGRPGYDQYGIGYIYAAS 377 (674)
T ss_pred HHHHHhhcCCCCCCCCcceEEEEecC
Confidence 99999999999994 6778887643
No 56
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=5.3e-38 Score=365.25 Aligned_cols=316 Identities=18% Similarity=0.217 Sum_probs=228.2
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHH
Q 004098 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAH------HDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMH 227 (774)
Q Consensus 157 ~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g------~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~ 227 (774)
+...+...+.+.++| +||++|.+||+.++++ .+.++++|||||||++|++|++. .+..++|++||++|+.
T Consensus 220 ~~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~ 298 (630)
T TIGR00643 220 PSEELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAE 298 (630)
T ss_pred CChHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHH
Confidence 333444444447899 6999999999999975 36899999999999999998864 5789999999999999
Q ss_pred HHHHHHHhc----CCcEEEEcCCCChHH---HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc
Q 004098 228 DQCSKLSKH----GVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (774)
Q Consensus 228 qq~~~l~~~----gi~~~~l~~~~~~~~---~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~ 300 (774)
|+++.+.++ |++++.++|+..... ....+..+.++|+|+||+.+.+ ...+.++++|||||+|++
T Consensus 299 Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-------~~~~~~l~lvVIDEaH~f-- 369 (630)
T TIGR00643 299 QHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-------KVEFKRLALVIIDEQHRF-- 369 (630)
T ss_pred HHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-------cccccccceEEEechhhc--
Confidence 999998874 689999998877643 3334456789999999997642 234578999999999985
Q ss_pred CCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEE-ccCCCCCcEEEEeecCC
Q 004098 301 WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVL-TSFFRPNLRFSVKHSKT 379 (774)
Q Consensus 301 ~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~-~~~~r~~l~~~v~~~~~ 379 (774)
|...+..+... ... ...++++++|||+.+...... ..+.. ...++. ....+.++...+....
T Consensus 370 -g~~qr~~l~~~------~~~------~~~~~~l~~SATp~prtl~l~--~~~~l-~~~~i~~~p~~r~~i~~~~~~~~- 432 (630)
T TIGR00643 370 -GVEQRKKLREK------GQG------GFTPHVLVMSATPIPRTLALT--VYGDL-DTSIIDELPPGRKPITTVLIKHD- 432 (630)
T ss_pred -cHHHHHHHHHh------ccc------CCCCCEEEEeCCCCcHHHHHH--hcCCc-ceeeeccCCCCCCceEEEEeCcc-
Confidence 42233332221 110 015789999999977654321 11111 011110 0111222222211100
Q ss_pred ccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhh
Q 004098 380 SSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEF 459 (774)
Q Consensus 380 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (774)
T Consensus 433 -------------------------------------------------------------------------------- 432 (630)
T TIGR00643 433 -------------------------------------------------------------------------------- 432 (630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCC-CCCCcEEEEeCch--------HHHHHHHH
Q 004098 460 LENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-LEDGLTIIYVPTR--------KETLSIAK 530 (774)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~-~~~~~~IIF~~sr--------~~~~~l~~ 530 (774)
....++..+.+. ..+.+++|||+.. ..++.+++
T Consensus 433 --------------------------------------~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~ 474 (630)
T TIGR00643 433 --------------------------------------EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYE 474 (630)
T ss_pred --------------------------------------hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHH
Confidence 000111111111 1345789999875 55677888
Q ss_pred HHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCC-CHHHHHHHhhccccCC
Q 004098 531 YLCGF--GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ-SLEAYYQEAGRAGRDG 607 (774)
Q Consensus 531 ~L~~~--g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~-s~~~y~Qr~GRaGR~G 607 (774)
.|.+. ++.+..+||+|++++|..++++|++|+.+|||||+++++|||+|++++||+|+.|. +...|.|++||+||.|
T Consensus 475 ~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g 554 (630)
T TIGR00643 475 RLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGD 554 (630)
T ss_pred HHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCC
Confidence 88763 78899999999999999999999999999999999999999999999999999997 6888999999999999
Q ss_pred CcceEEEEee
Q 004098 608 HLADCVLYAN 617 (774)
Q Consensus 608 ~~g~~il~~~ 617 (774)
+.|.|++++.
T Consensus 555 ~~g~~il~~~ 564 (630)
T TIGR00643 555 HQSYCLLVYK 564 (630)
T ss_pred CCcEEEEEEC
Confidence 9999999984
No 57
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=9.2e-37 Score=350.66 Aligned_cols=322 Identities=16% Similarity=0.093 Sum_probs=216.4
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCC-CEEEEecCCCchHHHHHHhhhc-----cCC-eEEEEccchHHHHHHHHHHH
Q 004098 162 NSLLKKHFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLCFQIPALL-----TGK-VVVVISPLISLMHDQCSKLS 234 (774)
Q Consensus 162 ~~~L~~~~g~~~~r~~Q~~ai~~il~g~-d~lv~apTGsGKTl~~~lpal~-----~~~-~~LVvsPt~~L~~qq~~~l~ 234 (774)
.+.++...||. |+|||.++|+.++.|+ ++++.+|||||||.+|.++.+. ..+ +.|+++|||+|+.|+++.+.
T Consensus 5 ~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~ 83 (844)
T TIGR02621 5 DEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAE 83 (844)
T ss_pred HHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHH
Confidence 34555667997 9999999999999998 5777899999999965543331 123 44457799999999999987
Q ss_pred hcC---------------------------CcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHH-HHH------HHH-
Q 004098 235 KHG---------------------------VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIR-LIK------PLQ- 279 (774)
Q Consensus 235 ~~g---------------------------i~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~-ll~------~~~- 279 (774)
+++ +++..++||.+.... ...+..+++|||+|++.+.+ .+. ...
T Consensus 84 ~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q-~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~ 162 (844)
T TIGR02621 84 KIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDE-WMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSR 162 (844)
T ss_pred HHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHH-HHhcCCCCcEEEECHHHHcCCccccccccccccc
Confidence 753 567778888776543 44455678999999876642 110 000
Q ss_pred --HHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCC
Q 004098 280 --RLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKG 357 (774)
Q Consensus 280 --~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~ 357 (774)
..-.+.++.+||||||| ++.| |...+.+|.......+. ....|+++||||++.++.+.....+.- +
T Consensus 163 pi~ag~L~~v~~LVLDEAD--Ld~g--F~~~l~~Il~~l~rp~~------~rprQtLLFSAT~p~ei~~l~~~~~~~--p 230 (844)
T TIGR02621 163 PLHAGFLGQDALIVHDEAH--LEPA--FQELLKQIMNEQQRPPD------FLPLRVVELTATSRTDGPDRTTLLSAE--D 230 (844)
T ss_pred cchhhhhccceEEEEehhh--hccc--cHHHHHHHHHhcccCcc------cccceEEEEecCCCccHHHHHHHHccC--C
Confidence 11125789999999999 5566 99988888553211100 012689999999987766533232211 1
Q ss_pred ceEEEc--cCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCC
Q 004098 358 TKFVLT--SFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPN 435 (774)
Q Consensus 358 ~~~~~~--~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (774)
..+... ....+.+...+.. .. ...+..
T Consensus 231 ~~i~V~~~~l~a~ki~q~v~v-~~------e~Kl~~-------------------------------------------- 259 (844)
T TIGR02621 231 YKHPVLKKRLAAKKIVKLVPP-SD------EKFLST-------------------------------------------- 259 (844)
T ss_pred ceeecccccccccceEEEEec-Ch------HHHHHH--------------------------------------------
Confidence 110000 0000000000000 00 000000
Q ss_pred CCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcE
Q 004098 436 IGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLT 515 (774)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~ 515 (774)
....+...+. ...+++
T Consensus 260 --------------------------------------------------------------lv~~L~~ll~--e~g~~v 275 (844)
T TIGR02621 260 --------------------------------------------------------------MVKELNLLMK--DSGGAI 275 (844)
T ss_pred --------------------------------------------------------------HHHHHHHHHh--hCCCcE
Confidence 0000111111 135689
Q ss_pred EEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHH-----HHHHHHhc----CC-------ceEEEEecccccCcccC
Q 004098 516 IIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLR-----RVHTEFHE----NK-------LEVVVATIAFGMGIDKL 579 (774)
Q Consensus 516 IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~-----~~~~~F~~----g~-------~~vLVAT~a~~~GIDip 579 (774)
||||+|++.++.+++.|.+.++ ..+||+|++.+|. +++++|++ |+ ..|||||+++++|||++
T Consensus 276 LVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId 353 (844)
T TIGR02621 276 LVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNIS 353 (844)
T ss_pred EEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCC
Confidence 9999999999999999998887 8999999999999 88999987 54 78999999999999998
Q ss_pred CcceEEEeCCCCCHHHHHHHhhccccCCCcceE-EEEee
Q 004098 580 NVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC-VLYAN 617 (774)
Q Consensus 580 ~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~-il~~~ 617 (774)
. ++||++..| +++|+||+||+||.|+.+.+ +.+++
T Consensus 354 ~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 354 A-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred c-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 6 899998877 69999999999999986444 55553
No 58
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=6.5e-38 Score=349.32 Aligned_cols=422 Identities=19% Similarity=0.255 Sum_probs=245.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc-----cCCeEEEEccchHHHHHHHHHHHhcCCc--EEE
Q 004098 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----TGKVVVVISPLISLMHDQCSKLSKHGVT--ACF 242 (774)
Q Consensus 170 g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~-----~~~~~LVvsPt~~L~~qq~~~l~~~gi~--~~~ 242 (774)
..-.+|+||.+.+..+| |+|+||++|||+|||+++...++. ..+++||++|++.|+.||...+..++++ +..
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~ 137 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTG 137 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCccccee
Confidence 44579999999999999 999999999999999998888874 4789999999999999999777777654 444
Q ss_pred EcCC-CChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHH-hcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhc
Q 004098 243 LGSG-QPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAE-SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFG 320 (774)
Q Consensus 243 l~~~-~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~-~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~ 320 (774)
..++ .+...... .....+|+|+||+.|.+.|.. .... ++.+.++||||||+... .|.|-..++.+..+...
T Consensus 138 ~l~~~~~~~~r~~--i~~s~~vff~TpQil~ndL~~--~~~~~ls~fs~iv~DE~Hra~k-n~~Y~~Vmr~~l~~k~~-- 210 (746)
T KOG0354|consen 138 QLGDTVPRSNRGE--IVASKRVFFRTPQILENDLKS--GLHDELSDFSLIVFDECHRTSK-NHPYNNIMREYLDLKNQ-- 210 (746)
T ss_pred eccCccCCCchhh--hhcccceEEeChHhhhhhccc--ccccccceEEEEEEcccccccc-cccHHHHHHHHHHhhhc--
Confidence 4444 33332222 223459999999999987663 3222 58899999999999975 33344444444333222
Q ss_pred ccccccccCCCCEEEEeccCCHHH--HHHHHHHcCCCCCceEE---EccCC-CCCcEEEEeecCCccchhhhHhHHHHHH
Q 004098 321 ANNLKSLKFDIPLMALTATATIQV--REDILKSLHMSKGTKFV---LTSFF-RPNLRFSVKHSKTSSRASYKKDFCQLID 394 (774)
Q Consensus 321 ~~~~~~l~~~~~il~lTAT~~~~~--~~~i~~~L~~~~~~~~~---~~~~~-r~~l~~~v~~~~~~~~~~~~~~l~~l~~ 394 (774)
..|+|+|||||.... ...++..|...-+.... ...+. .......+.. -........+.|..++.
T Consensus 211 ---------~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~-~~~~~~~~~~~f~~~i~ 280 (746)
T KOG0354|consen 211 ---------GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVD-LSLCERDIEDPFGMIIE 280 (746)
T ss_pred ---------cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCc-HHHhhhhhhhhHHHHHH
Confidence 349999999996422 22233333322111000 11100 0011111111 01111233344555555
Q ss_pred HHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCc--cccccc
Q 004098 395 IYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVD--DWDVAC 472 (774)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ 472 (774)
.+.......+-.+. .+....+....+......+++.....-.. .............+..+++. .....+
T Consensus 281 p~l~~l~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~q~~~---f~~~~~~~~~~~ll~~~gir~~~~l~~~ 351 (746)
T KOG0354|consen 281 PLLQQLQEEGLIEI------SDKSTSYEQWVVQAEKAAAPNGPENQRNC---FYALHLRKYNLALLISDGIRFVDALDYL 351 (746)
T ss_pred HHHHHHHhcCcccc------ccccccccchhhhhhhhhccCCCccchhh---HHHHHHHHHHHHHHhhcchhhHHHHhhh
Confidence 55544331111000 00000111100000000111100000000 00000000000011111111 111111
Q ss_pred ccccCCCCCCC-------C-C-----------CccchhhccccCchhHhhhhccCCC---CCCcEEEEeCchHHHHHHHH
Q 004098 473 GEFYGHSPHRD-------R-D-----------TDRSFERTDLLNKPAERLSMLQEPL---EDGLTIIYVPTRKETLSIAK 530 (774)
Q Consensus 473 ~~~~~~~~~~~-------~-~-----------~~~~~~~~~~~~k~~~ll~~L~~~~---~~~~~IIF~~sr~~~~~l~~ 530 (774)
.+++....... . . ............|...+.+.|.+.. +..++||||.+|..|+.|..
T Consensus 352 ~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~ 431 (746)
T KOG0354|consen 352 EDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKK 431 (746)
T ss_pred hhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHH
Confidence 11111110000 0 0 0000011123456666666654443 45699999999999999999
Q ss_pred HHHh---CCCceEEecC--------CCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHH
Q 004098 531 YLCG---FGVKAAAYNA--------SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599 (774)
Q Consensus 531 ~L~~---~g~~~~~~h~--------~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr 599 (774)
+|.+ .|+++..+-| +|++.++.+++++|+.|+++|||||+++++||||++|++||.||...|+...+||
T Consensus 432 ~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQr 511 (746)
T KOG0354|consen 432 WLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQR 511 (746)
T ss_pred HHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHH
Confidence 9983 3555555544 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCcceEEEEeeCCC
Q 004098 600 AGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 600 ~GRaGR~G~~g~~il~~~~~~ 620 (774)
+|| ||+ +.|.|+++++...
T Consensus 512 rGR-gRa-~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 512 RGR-GRA-RNSKCVLLTTGSE 530 (746)
T ss_pred hcc-ccc-cCCeEEEEEcchh
Confidence 999 999 6788998887433
No 59
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=6.7e-36 Score=361.75 Aligned_cols=307 Identities=21% Similarity=0.244 Sum_probs=214.8
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHhc
Q 004098 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKH 236 (774)
Q Consensus 160 ~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~~ 236 (774)
+..+.+++.+|+ .|+++|.++++.++.|+|++++||||+|||+.++++++. .++++|||+||++|+.|+++.+.++
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l 146 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKF 146 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHH
Confidence 345567778898 799999999999999999999999999999754443332 4689999999999999999999986
Q ss_pred C----CcEEEEcCCCC--h---HHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCC---
Q 004098 237 G----VTACFLGSGQP--D---NKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD--- 304 (774)
Q Consensus 237 g----i~~~~l~~~~~--~---~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~--- 304 (774)
+ +.+..+.++.. . ......+..+.++|+|+||++|.+.+. .+...++++|||||||++++|+++
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~----~l~~~~~~~lVvDEaD~~L~~~k~id~ 222 (1176)
T PRK09401 147 GEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD----ELPKKKFDFVFVDDVDAVLKSSKNIDK 222 (1176)
T ss_pred hhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH----hccccccCEEEEEChHHhhhcccchhh
Confidence 3 45555554432 1 122233445679999999999987654 334566999999999999987654
Q ss_pred ------cH-HHH-----------------HHHHHHHHHhcccccccccCCCCEEEEeccCCHH-HHHHHHHH-cCCCCCc
Q 004098 305 ------FR-PDY-----------------RRLSVLRENFGANNLKSLKFDIPLMALTATATIQ-VREDILKS-LHMSKGT 358 (774)
Q Consensus 305 ------fr-~~~-----------------~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~-~~~~i~~~-L~~~~~~ 358 (774)
|. .++ .++..+.+.+... -+...|++++|||+++. +...+... +++.
T Consensus 223 ~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~----~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~--- 295 (1176)
T PRK09401 223 LLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAEL----KDKKGVLVVSSATGRPRGNRVKLFRELLGFE--- 295 (1176)
T ss_pred HHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhc----ccCCceEEEEeCCCCccchHHHHhhccceEE---
Confidence 53 233 3333333322110 01257899999999875 33322211 1110
Q ss_pred eEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCC
Q 004098 359 KFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGD 438 (774)
Q Consensus 359 ~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (774)
+-.......|+......
T Consensus 296 -v~~~~~~~rnI~~~yi~-------------------------------------------------------------- 312 (1176)
T PRK09401 296 -VGSPVFYLRNIVDSYIV-------------------------------------------------------------- 312 (1176)
T ss_pred -ecCcccccCCceEEEEE--------------------------------------------------------------
Confidence 00000000111000000
Q ss_pred CCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEE
Q 004098 439 GYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIY 518 (774)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF 518 (774)
...+...+..++... +..+|||
T Consensus 313 --------------------------------------------------------~~~k~~~L~~ll~~l--~~~~LIF 334 (1176)
T PRK09401 313 --------------------------------------------------------DEDSVEKLVELVKRL--GDGGLIF 334 (1176)
T ss_pred --------------------------------------------------------cccHHHHHHHHHHhc--CCCEEEE
Confidence 001222333333322 2479999
Q ss_pred eCchHH---HHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEE----ecccccCcccCC-cceEEEeCCC
Q 004098 519 VPTRKE---TLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVA----TIAFGMGIDKLN-VRRIIHYGWP 590 (774)
Q Consensus 519 ~~sr~~---~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVA----T~a~~~GIDip~-V~~VI~~d~p 590 (774)
|++++. ++.++++|...|+++..+||+| ++.+++|++|+++|||| |++++||||+|+ |++|||||+|
T Consensus 335 v~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP 409 (1176)
T PRK09401 335 VPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVP 409 (1176)
T ss_pred EecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCC
Confidence 999877 9999999999999999999999 23459999999999999 689999999999 8999999999
Q ss_pred C------CHHHHHHHhhccc
Q 004098 591 Q------SLEAYYQEAGRAG 604 (774)
Q Consensus 591 ~------s~~~y~Qr~GRaG 604 (774)
. ..+.|.|++||+-
T Consensus 410 ~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 410 KFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred CEEEeccccccCHHHHHHHH
Confidence 8 6788999999994
No 60
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=7.1e-35 Score=316.78 Aligned_cols=299 Identities=16% Similarity=0.195 Sum_probs=203.9
Q ss_pred HHHHHHHHHHcCCC--EEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhc--------CCcEEEEcCC
Q 004098 177 FQKEALSAWLAHHD--CLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKH--------GVTACFLGSG 246 (774)
Q Consensus 177 ~Q~~ai~~il~g~d--~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~--------gi~~~~l~~~ 246 (774)
+|.++++++.++.+ +++.+|||+|||+||++|++....++++++|+++|++||.+.+.++ ++.+..+.+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ 80 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKA 80 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCC
Confidence 49999999998874 7889999999999999999988889999999999999999998874 3344445543
Q ss_pred CChH--HH-----------------HHHHHcCCceEEEEChHHHHHHHHHHH---H---HHHhcCccEEEEecccccccC
Q 004098 247 QPDN--KV-----------------EQKALRGMYSIIYVCPETVIRLIKPLQ---R---LAESRGIALFAIDEVHCVSKW 301 (774)
Q Consensus 247 ~~~~--~~-----------------~~~~~~~~~~Ilv~TPe~l~~ll~~~~---~---~~~~~~i~~iVIDEaH~l~~~ 301 (774)
.... .. ........+.|+++||+.+..++.... . ...+..+++|||||+|.+..|
T Consensus 81 ~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~ 160 (357)
T TIGR03158 81 TLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAK 160 (357)
T ss_pred chHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcc
Confidence 2211 00 111123467899999999976544211 1 012467999999999999988
Q ss_pred CCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccC-C--------------
Q 004098 302 GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSF-F-------------- 366 (774)
Q Consensus 302 g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~-~-------------- 366 (774)
+.++...+..+..+..... ...+++++|||+++.+.+.+...+.+.. +....... .
T Consensus 161 ~~~~~~~~l~~~~~~~~~~--------~~~~~i~lSAT~~~~~~~~l~~~~~~~~-~~~~v~g~~~~~~~~~~~~~~~~~ 231 (357)
T TIGR03158 161 QLVGMLFLLAYMQLIRFFE--------CRRKFVFLSATPDPALILRLQNAKQAGV-KIAPIDGEKYQFPDNPELEADNKT 231 (357)
T ss_pred cchhhhhhhHHHHHHHhhh--------cCCcEEEEecCCCHHHHHHHHhccccCc-eeeeecCcccccCCChhhhccccc
Confidence 7766665544444433322 1579999999999988887766533322 22221111 0
Q ss_pred ---C---CCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCC
Q 004098 367 ---R---PNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGY 440 (774)
Q Consensus 367 ---r---~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (774)
| |++...+.+... .. ...+..+.+
T Consensus 232 ~~~~~~~~~i~~~~~~~~~-~~---~~~l~~l~~---------------------------------------------- 261 (357)
T TIGR03158 232 QSFRPVLPPVELELIPAPD-FK---EEELSELAE---------------------------------------------- 261 (357)
T ss_pred cccceeccceEEEEEeCCc-hh---HHHHHHHHH----------------------------------------------
Confidence 0 122222221000 00 000000000
Q ss_pred CCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeC
Q 004098 441 YDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVP 520 (774)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~ 520 (774)
.+.+.+. ...++++||||+
T Consensus 262 ------------------------------------------------------------~i~~~~~-~~~~~k~LIf~n 280 (357)
T TIGR03158 262 ------------------------------------------------------------EVIERFR-QLPGERGAIILD 280 (357)
T ss_pred ------------------------------------------------------------HHHHHHh-ccCCCeEEEEEC
Confidence 0011111 114568999999
Q ss_pred chHHHHHHHHHHHhCC--CceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHH
Q 004098 521 TRKETLSIAKYLCGFG--VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQ 598 (774)
Q Consensus 521 sr~~~~~l~~~L~~~g--~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Q 598 (774)
|++.++.++..|++.+ +.+..+||.+++.+|.++ ++..|||||++++||||++.+ +|| ++ |.++++|+|
T Consensus 281 t~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiq 351 (357)
T TIGR03158 281 SLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQ 351 (357)
T ss_pred CHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhh
Confidence 9999999999999864 578899999999998754 378999999999999999987 666 55 899999999
Q ss_pred Hhhccc
Q 004098 599 EAGRAG 604 (774)
Q Consensus 599 r~GRaG 604 (774)
|+||+|
T Consensus 352 R~GR~g 357 (357)
T TIGR03158 352 RLGRLG 357 (357)
T ss_pred hcccCC
Confidence 999997
No 61
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=6.2e-35 Score=320.17 Aligned_cols=300 Identities=16% Similarity=0.146 Sum_probs=194.9
Q ss_pred CEEEEecCCCchHHHHHHhhhc-----cCCeEEEEccchHHHHHHHHHHHhc-CCcEEEEcCCCChH-----------HH
Q 004098 190 DCLVLAATGSGKSLCFQIPALL-----TGKVVVVISPLISLMHDQCSKLSKH-GVTACFLGSGQPDN-----------KV 252 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpal~-----~~~~~LVvsPt~~L~~qq~~~l~~~-gi~~~~l~~~~~~~-----------~~ 252 (774)
|+++.+|||+|||++|++|++. ...+++|++|+++|+.|+.+.+..+ +..+..++++.... ..
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 6899999999999999999983 4679999999999999999999985 65555554432210 00
Q ss_pred HHHHH-c-----CCceEEEEChHHHHHHHHH-H-HHHHHh--cCccEEEEecccccccCCCCcHHHHHHHHHHHHHhccc
Q 004098 253 EQKAL-R-----GMYSIIYVCPETVIRLIKP-L-QRLAES--RGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGAN 322 (774)
Q Consensus 253 ~~~~~-~-----~~~~Ilv~TPe~l~~ll~~-~-~~~~~~--~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~ 322 (774)
..... . -..+|+++||+++...+.. + .....+ ...++|||||||++.+++ +.. +..+......
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~--~~~-l~~~l~~l~~---- 153 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYT--LAL-ILAVLEVLKD---- 153 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHH--HHH-HHHHHHHHHH----
Confidence 00011 1 1357999999998865442 1 111222 234899999999998865 222 3332221111
Q ss_pred ccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcc
Q 004098 323 NLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKT 402 (774)
Q Consensus 323 ~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 402 (774)
.+.|++++|||++....+ +.......... ......+.......
T Consensus 154 ------~~~~~i~~SATlp~~l~~-~~~~~~~~~~~----~~~~~~~~~~~~~~-------------------------- 196 (358)
T TIGR01587 154 ------NDVPILLMSATLPKFLKE-YAEKIGYVEFN----EPLDLKEERRFERH-------------------------- 196 (358)
T ss_pred ------cCCCEEEEecCchHHHHH-HHhcCCCcccc----cCCCCccccccccc--------------------------
Confidence 268999999999854433 33222111000 00000000000000
Q ss_pred cccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCC
Q 004098 403 GEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHR 482 (774)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 482 (774)
.+.. +
T Consensus 197 -------------------------------------------------------~~~~----------~---------- 201 (358)
T TIGR01587 197 -------------------------------------------------------RFIK----------I---------- 201 (358)
T ss_pred -------------------------------------------------------ccee----------e----------
Confidence 0000 0
Q ss_pred CCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCC--ceEEecCCCCHHHHHHH----HH
Q 004098 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGV--KAAAYNASLPKSQLRRV----HT 556 (774)
Q Consensus 483 ~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~--~~~~~h~~l~~~~R~~~----~~ 556 (774)
......+...+..++.....++++||||+|++.++.+++.|.+.+. .+..|||++++.+|.+. ++
T Consensus 202 ---------~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~ 272 (358)
T TIGR01587 202 ---------ESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLE 272 (358)
T ss_pred ---------ccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHH
Confidence 0000001111111222222467999999999999999999988766 59999999999999764 88
Q ss_pred HHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcc----eEEEEeeCCC
Q 004098 557 EFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLA----DCVLYANLSS 620 (774)
Q Consensus 557 ~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g----~~il~~~~~~ 620 (774)
.|++|+..|||||+++++|||++ +++||++..| +++|+||+||+||.|+.. ..++|....+
T Consensus 273 ~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 273 EMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 99999999999999999999995 8999998776 789999999999998653 5666655443
No 62
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.5e-34 Score=326.42 Aligned_cols=324 Identities=14% Similarity=0.092 Sum_probs=214.6
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhh---hcc-CCeEEEEccchHHHHHHHHHHHhcCC----cEEE
Q 004098 171 HSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPA---LLT-GKVVVVISPLISLMHDQCSKLSKHGV----TACF 242 (774)
Q Consensus 171 ~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpa---l~~-~~~~LVvsPt~~L~~qq~~~l~~~gi----~~~~ 242 (774)
...||++|.++++.++.+++.++++|||+|||+++...+ +.. .+++|||+||++|+.|+.+.+.+++. ....
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~ 191 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHK 191 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeE
Confidence 347999999999999999999999999999999765433 223 34999999999999999999998752 2334
Q ss_pred EcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhccc
Q 004098 243 LGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGAN 322 (774)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~ 322 (774)
+.+|.... ...+|+|+||+++.+... ..+.++++|||||||++.. +.+..+ ...++
T Consensus 192 i~~g~~~~--------~~~~I~VaT~qsl~~~~~-----~~~~~~~~iIvDEaH~~~~------~~~~~i---l~~~~-- 247 (501)
T PHA02558 192 IYSGTAKD--------TDAPIVVSTWQSAVKQPK-----EWFDQFGMVIVDECHLFTG------KSLTSI---ITKLD-- 247 (501)
T ss_pred EecCcccC--------CCCCEEEeeHHHHhhchh-----hhccccCEEEEEchhcccc------hhHHHH---HHhhh--
Confidence 44444321 346899999999875432 1246799999999999964 222222 22222
Q ss_pred ccccccCCCCEEEEeccCCHHHHHH--HHHHcCCCCCceEEEcc---C-CC---CCcEEEEeecCCccchhhhHhHHHHH
Q 004098 323 NLKSLKFDIPLMALTATATIQVRED--ILKSLHMSKGTKFVLTS---F-FR---PNLRFSVKHSKTSSRASYKKDFCQLI 393 (774)
Q Consensus 323 ~~~~l~~~~~il~lTAT~~~~~~~~--i~~~L~~~~~~~~~~~~---~-~r---~~l~~~v~~~~~~~~~~~~~~l~~l~ 393 (774)
...++++||||+....... +...++ +. ..... . .. .++.+.......... ....+
T Consensus 248 ------~~~~~lGLTATp~~~~~~~~~~~~~fG---~i-~~~v~~~~li~~g~l~~~~~~~v~~~~~~~-----~~~~~- 311 (501)
T PHA02558 248 ------NCKFKFGLTGSLRDGKANILQYVGLFG---DI-FKPVTTSQLMEEGQVTDLKINSIFLRYPDE-----DRVKL- 311 (501)
T ss_pred ------ccceEEEEeccCCCccccHHHHHHhhC---Cc-eEEecHHHHHhCCCcCCceEEEEeccCCHH-----Hhhhh-
Confidence 2467999999996433211 122222 11 00000 0 00 000000000000000 00000
Q ss_pred HHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccc
Q 004098 394 DIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACG 473 (774)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 473 (774)
....| .....++.+
T Consensus 312 -------------------------------------------~~~~~------------~~~~~~l~~----------- 325 (501)
T PHA02558 312 -------------------------------------------KGEDY------------QEEIKYITS----------- 325 (501)
T ss_pred -------------------------------------------cccch------------HHHHHHHhc-----------
Confidence 00000 000000000
Q ss_pred cccCCCCCCCCCCccchhhccccCchhHhhhhccCC-CCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHH
Q 004098 474 EFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLR 552 (774)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~-~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~ 552 (774)
...+...+...+... ..+.++||||.+++.++.|++.|.+.|+++..+||++++++|.
T Consensus 326 ---------------------~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~ 384 (501)
T PHA02558 326 ---------------------HTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRN 384 (501)
T ss_pred ---------------------cHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Confidence 001111111111111 1356899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEEe-cccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCC
Q 004098 553 RVHTEFHENKLEVVVAT-IAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (774)
Q Consensus 553 ~~~~~F~~g~~~vLVAT-~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~ 621 (774)
.+++.|+.|+..||||| +++++|+|+|++++||++.++.|...|+||+||++|.+..+...++|+.-|.
T Consensus 385 ~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~ 454 (501)
T PHA02558 385 EMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDD 454 (501)
T ss_pred HHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecc
Confidence 99999999999999999 8999999999999999999999999999999999999887766666665553
No 63
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=9.8e-34 Score=340.31 Aligned_cols=420 Identities=17% Similarity=0.175 Sum_probs=246.8
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc----cCCeEEEEccchHHHHHHHHHHHhc-CC---cEEE
Q 004098 171 HSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSKH-GV---TACF 242 (774)
Q Consensus 171 ~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~----~~~~~LVvsPt~~L~~qq~~~l~~~-gi---~~~~ 242 (774)
.-++|+||.+++..++.+ |+|+++|||+|||++|++++.. .++++|||+||++|+.||...++++ ++ .+..
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~ 91 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVV 91 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEE
Confidence 347999999999999866 9999999999999999888763 3789999999999999999999885 54 5666
Q ss_pred EcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhccc
Q 004098 243 LGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGAN 322 (774)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~ 322 (774)
++++........ .....+|+|+||+.+.+.+. .+.+...++++|||||||++.... .+..+.......
T Consensus 92 ~~g~~~~~~r~~--~~~~~~iiv~T~~~l~~~l~--~~~~~~~~~~liVvDEaH~~~~~~-----~~~~i~~~~~~~--- 159 (773)
T PRK13766 92 FTGEVSPEKRAE--LWEKAKVIVATPQVIENDLI--AGRISLEDVSLLIFDEAHRAVGNY-----AYVYIAERYHED--- 159 (773)
T ss_pred EeCCCCHHHHHH--HHhCCCEEEECHHHHHHHHH--cCCCChhhCcEEEEECCccccccc-----cHHHHHHHHHhc---
Confidence 776665543222 23346999999999876554 445566789999999999987421 122222211111
Q ss_pred ccccccCCCCEEEEeccCC--HHHHHHHHHHcCCCCCceEEEccC--------CCCCcEEEEeecCCccchhhhHhHHHH
Q 004098 323 NLKSLKFDIPLMALTATAT--IQVREDILKSLHMSKGTKFVLTSF--------FRPNLRFSVKHSKTSSRASYKKDFCQL 392 (774)
Q Consensus 323 ~~~~l~~~~~il~lTAT~~--~~~~~~i~~~L~~~~~~~~~~~~~--------~r~~l~~~v~~~~~~~~~~~~~~l~~l 392 (774)
.....+++|||||. .+....++..|++.. ..+...+ .++.+.+..... . .....++.+
T Consensus 160 -----~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~--v~~~~~~~~~v~~~~~~~~v~~~~v~l----~-~~~~~i~~~ 227 (773)
T PRK13766 160 -----AKNPLVLGLTASPGSDEEKIKEVCENLGIEH--VEVRTEDDPDVKPYVHKVKIEWVRVEL----P-EELKEIRDL 227 (773)
T ss_pred -----CCCCEEEEEEcCCCCCHHHHHHHHHhCCceE--EEEcCCCChhHHhhhccceeEEEEeCC----c-HHHHHHHHH
Confidence 11456999999984 345566777776542 1122111 112222221111 1 111222222
Q ss_pred HHHHHhhhcccccccccCCCcCCCccCccCCCcccc-cccCCCCCCCCCC---CCccCCCCCCccchhhhhhhcCCCccc
Q 004098 393 IDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSE-ESRISPNIGDGYY---DDEDVGNSPMGKEMSVEFLENDSVDDW 468 (774)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~ 468 (774)
+..+...+...-.....+........ ...... .......+...+. .................++...+...+
T Consensus 228 l~~~~~~~l~~l~~~~~~~~~~~~~~----~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 303 (773)
T PRK13766 228 LNEALKDRLKKLKELGVIVSISPDVS----KKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEAL 303 (773)
T ss_pred HHHHHHHHHHHHHHCCCcccCCCCcC----HHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 22222111000000000000000000 000000 0000000000000 000000000000001111111111111
Q ss_pred ccccccccCCCCCCCC---------------CCccchhhccccCchhHhhhhccCC---CCCCcEEEEeCchHHHHHHHH
Q 004098 469 DVACGEFYGHSPHRDR---------------DTDRSFERTDLLNKPAERLSMLQEP---LEDGLTIIYVPTRKETLSIAK 530 (774)
Q Consensus 469 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~k~~~ll~~L~~~---~~~~~~IIF~~sr~~~~~l~~ 530 (774)
...+............ .............|...+.++|.+. ..+.++||||+++++++.|++
T Consensus 304 ~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~ 383 (773)
T PRK13766 304 RRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVD 383 (773)
T ss_pred HHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHH
Confidence 1111111000000000 0000011123345666677776554 356799999999999999999
Q ss_pred HHHhCCCceEEecCC--------CCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhc
Q 004098 531 YLCGFGVKAAAYNAS--------LPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602 (774)
Q Consensus 531 ~L~~~g~~~~~~h~~--------l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GR 602 (774)
+|...|+.+..+||. |++.+|.+++++|++|+++|||||+++++|+|+|++++||+||+|+|...|+||+||
T Consensus 384 ~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR 463 (773)
T PRK13766 384 LLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGR 463 (773)
T ss_pred HHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcc
Confidence 999999999999986 999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceEEEEeeCCC
Q 004098 603 AGRDGHLADCVLYANLSS 620 (774)
Q Consensus 603 aGR~G~~g~~il~~~~~~ 620 (774)
+||.|. |.+++++....
T Consensus 464 ~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 464 TGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred cCcCCC-CEEEEEEeCCC
Confidence 999875 77777765443
No 64
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=9.4e-34 Score=324.75 Aligned_cols=306 Identities=16% Similarity=0.196 Sum_probs=207.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCchHHH---------HHHhhhc---------cCCeEEEEccchHHHHHHHHHHHhc--
Q 004098 177 FQKEALSAWLAHHDCLVLAATGSGKSLC---------FQIPALL---------TGKVVVVISPLISLMHDQCSKLSKH-- 236 (774)
Q Consensus 177 ~Q~~ai~~il~g~d~lv~apTGsGKTl~---------~~lpal~---------~~~~~LVvsPt~~L~~qq~~~l~~~-- 236 (774)
+|.++++.+++|+|+|++|+||+|||.+ |++|.+. ..+.++|++||++|+.|....+.+.
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg 247 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLG 247 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence 7999999999999999999999999987 4333321 2468999999999999988888652
Q ss_pred -----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHH
Q 004098 237 -----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRR 311 (774)
Q Consensus 237 -----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~ 311 (774)
|.++....++.... .........+|+++|++... ..+.++++|||||||.++..+ + ....
T Consensus 248 ~~~~~g~~v~v~~Gg~~~~--~~~t~~k~~~Ilv~T~~L~l---------~~L~~v~~VVIDEaHEr~~~~-D---llL~ 312 (675)
T PHA02653 248 FDEIDGSPISLKYGSIPDE--LINTNPKPYGLVFSTHKLTL---------NKLFDYGTVIIDEVHEHDQIG-D---IIIA 312 (675)
T ss_pred ccccCCceEEEEECCcchH--HhhcccCCCCEEEEeCcccc---------cccccCCEEEccccccCccch-h---HHHH
Confidence 34556677776532 11122235689999976311 135679999999999998755 1 1111
Q ss_pred HHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHH
Q 004098 312 LSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQ 391 (774)
Q Consensus 312 l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~ 391 (774)
+ ++...+ ...++++||||++.++. .+...++ +...+........++............ .
T Consensus 313 l--lk~~~~--------~~rq~ILmSATl~~dv~-~l~~~~~--~p~~I~I~grt~~pV~~~yi~~~~~~~--~------ 371 (675)
T PHA02653 313 V--ARKHID--------KIRSLFLMTATLEDDRD-RIKEFFP--NPAFVHIPGGTLFPISEVYVKNKYNPK--N------ 371 (675)
T ss_pred H--HHHhhh--------hcCEEEEEccCCcHhHH-HHHHHhc--CCcEEEeCCCcCCCeEEEEeecCcccc--c------
Confidence 1 222111 13489999999987754 3555554 222222221111111111000000000 0
Q ss_pred HHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccc
Q 004098 392 LIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVA 471 (774)
Q Consensus 392 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 471 (774)
...++.
T Consensus 372 ----------------------------------------------------------------~~~y~~---------- 377 (675)
T PHA02653 372 ----------------------------------------------------------------KRAYIE---------- 377 (675)
T ss_pred ----------------------------------------------------------------chhhhH----------
Confidence 000000
Q ss_pred cccccCCCCCCCCCCccchhhccccCchhHhhhhccCC--CCCCcEEEEeCchHHHHHHHHHHHhC--CCceEEecCCCC
Q 004098 472 CGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP--LEDGLTIIYVPTRKETLSIAKYLCGF--GVKAAAYNASLP 547 (774)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~--~~~~~~IIF~~sr~~~~~l~~~L~~~--g~~~~~~h~~l~ 547 (774)
.....++..+... ..++++||||+++.+++.+++.|.+. ++.+..+||+|+
T Consensus 378 -------------------------~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Ls 432 (675)
T PHA02653 378 -------------------------EEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVP 432 (675)
T ss_pred -------------------------HHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcC
Confidence 0000111111111 13468999999999999999999987 799999999999
Q ss_pred HHHHHHHHHHH-hcCCceEEEEecccccCcccCCcceEEEeC---CCC---------CHHHHHHHhhccccCCCcceEEE
Q 004098 548 KSQLRRVHTEF-HENKLEVVVATIAFGMGIDKLNVRRIIHYG---WPQ---------SLEAYYQEAGRAGRDGHLADCVL 614 (774)
Q Consensus 548 ~~~R~~~~~~F-~~g~~~vLVAT~a~~~GIDip~V~~VI~~d---~p~---------s~~~y~Qr~GRaGR~G~~g~~il 614 (774)
+. ++++++| ++|+.+|||||+++++|||+|+|++||++| .|. |.++|.||+|||||. ++|.|+.
T Consensus 433 q~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~r 509 (675)
T PHA02653 433 NI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVY 509 (675)
T ss_pred HH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEE
Confidence 75 5667777 689999999999999999999999999999 665 889999999999999 8999999
Q ss_pred EeeCCC
Q 004098 615 YANLSS 620 (774)
Q Consensus 615 ~~~~~~ 620 (774)
||+..+
T Consensus 510 Lyt~~~ 515 (675)
T PHA02653 510 FYDLDL 515 (675)
T ss_pred EECHHH
Confidence 998654
No 65
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=332.05 Aligned_cols=335 Identities=24% Similarity=0.311 Sum_probs=245.8
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc-----cCCeEEEEccchHHHHHHHHHH
Q 004098 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----TGKVVVVISPLISLMHDQCSKL 233 (774)
Q Consensus 159 ~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~-----~~~~~LVvsPt~~L~~qq~~~l 233 (774)
..+...|. ..|...|+++|.+|+..+.+|+|+||..|||||||+||++|++. ...++|||.||++|++||.++|
T Consensus 57 ~~l~~~l~-~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl 135 (851)
T COG1205 57 ESLKSALV-KAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERL 135 (851)
T ss_pred hHHHHHHH-HhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHH
Confidence 33456666 34777899999999999999999999999999999999999984 2457899999999999999999
Q ss_pred Hhc----C--CcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHH-HHHHHH-HHHhcCccEEEEeccccccc-CCCC
Q 004098 234 SKH----G--VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRL-IKPLQR-LAESRGIALFAIDEVHCVSK-WGHD 304 (774)
Q Consensus 234 ~~~----g--i~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~l-l~~~~~-~~~~~~i~~iVIDEaH~l~~-~g~~ 304 (774)
+++ + +.+..++|+..... ...+..+.++|+++||.||..+ +..... ...+.++++||+||+|..-. .|.+
T Consensus 136 ~~~~~~~~~~v~~~~y~Gdt~~~~-r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~ 214 (851)
T COG1205 136 RELISDLPGKVTFGRYTGDTPPEE-RRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSE 214 (851)
T ss_pred HHHHHhCCCcceeeeecCCCChHH-HHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhH
Confidence 985 3 55556666555433 4467788899999999999863 332222 33446799999999999864 7888
Q ss_pred cHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCce-EEEccCCCCCcEEEEeecCCccc-
Q 004098 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTK-FVLTSFFRPNLRFSVKHSKTSSR- 382 (774)
Q Consensus 305 fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~-~~~~~~~r~~l~~~v~~~~~~~~- 382 (774)
....+++|..+.+.++. +.|+|+.|||.... .+....+....-.. +.....-+...++.+........
T Consensus 215 vA~llRRL~~~~~~~~~--------~~q~i~~SAT~~np--~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~ 284 (851)
T COG1205 215 VALLLRRLLRRLRRYGS--------PLQIICTSATLANP--GEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELA 284 (851)
T ss_pred HHHHHHHHHHHHhccCC--------CceEEEEeccccCh--HHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhh
Confidence 88888999888776653 78999999998432 22233332221111 11122222233333222100000
Q ss_pred ----hhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhh
Q 004098 383 ----ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVE 458 (774)
Q Consensus 383 ----~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (774)
.+.....
T Consensus 285 ~~~r~s~~~~~--------------------------------------------------------------------- 295 (851)
T COG1205 285 ESIRRSALAEL--------------------------------------------------------------------- 295 (851)
T ss_pred hhcccchHHHH---------------------------------------------------------------------
Confidence 0000000
Q ss_pred hhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHH----HHHHh
Q 004098 459 FLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIA----KYLCG 534 (774)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~----~~L~~ 534 (774)
..++..+.. .+-++|+|+.+++.++.++ ..+..
T Consensus 296 -----------------------------------------~~~~~~~~~--~~~~tL~F~~sr~~~e~~~~~~~~~~~~ 332 (851)
T COG1205 296 -----------------------------------------ATLAALLVR--NGIQTLVFFRSRKQVELLYLSPRRRLVR 332 (851)
T ss_pred -----------------------------------------HHHHHHHHH--cCceEEEEEehhhhhhhhhhchhHHHhh
Confidence 000111101 4558999999999999997 44444
Q ss_pred CC----CceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCC-CHHHHHHHhhccccCCCc
Q 004098 535 FG----VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ-SLEAYYQEAGRAGRDGHL 609 (774)
Q Consensus 535 ~g----~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~-s~~~y~Qr~GRaGR~G~~ 609 (774)
.+ ..+..|+|+|..++|.++...|++|++.++++|++++.|||+.+++.||.++.|. +..+++|+.|||||.++.
T Consensus 333 ~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~ 412 (851)
T COG1205 333 EGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQE 412 (851)
T ss_pred cchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCC
Confidence 45 6789999999999999999999999999999999999999999999999999999 999999999999999988
Q ss_pred ceEEEEee
Q 004098 610 ADCVLYAN 617 (774)
Q Consensus 610 g~~il~~~ 617 (774)
+..++.+.
T Consensus 413 ~l~~~v~~ 420 (851)
T COG1205 413 SLVLVVLR 420 (851)
T ss_pred ceEEEEeC
Confidence 77777665
No 66
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8.6e-33 Score=318.11 Aligned_cols=418 Identities=17% Similarity=0.149 Sum_probs=267.2
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHhc-
Q 004098 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKH- 236 (774)
Q Consensus 161 l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~~- 236 (774)
+.++.++.+|+ .|+++|..++..+++|+ |+.|.||+|||++|.+|++. .++.++|++||+.|+.|....+..+
T Consensus 67 vrea~~R~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 67 VREAAKRVLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred HHHHHHHHhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 45666678898 79999999999888877 99999999999999999973 6899999999999999999988773
Q ss_pred ---CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHH-HHHHHH-H---HHHHHhcCccEEEEecccccc-c-------
Q 004098 237 ---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV-IRLIKP-L---QRLAESRGIALFAIDEVHCVS-K------- 300 (774)
Q Consensus 237 ---gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l-~~ll~~-~---~~~~~~~~i~~iVIDEaH~l~-~------- 300 (774)
|+++..+.++.+.....+. ...++|+|+||.+| .+++.. + .....+..+.++||||||.|+ +
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~~--~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpli 221 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKKA--IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLI 221 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHHH--hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCcee
Confidence 8999999988873222222 23489999999998 343332 1 112345789999999999974 2
Q ss_pred ---CCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCce-------------EEEcc
Q 004098 301 ---WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTK-------------FVLTS 364 (774)
Q Consensus 301 ---~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~-------------~~~~~ 364 (774)
.+..-...|..+..+...+....--.+......+.||. ...+.+...+++.+-.. +....
T Consensus 222 isg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~----~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~ 297 (790)
T PRK09200 222 ISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTD----QGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHV 297 (790)
T ss_pred eeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecH----hHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHH
Confidence 11122345655555555543210000111233444443 33333333343321000 00001
Q ss_pred CCCCCcEEEEeecC----------CccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCccccccc-CC
Q 004098 365 FFRPNLRFSVKHSK----------TSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESR-IS 433 (774)
Q Consensus 365 ~~r~~l~~~v~~~~----------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 433 (774)
+...+..|.|...+ ......|.+-+++.++.-..-. +.++.. .+
T Consensus 298 ~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~-------------------------i~~e~~t~a 352 (790)
T PRK09200 298 LFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVE-------------------------ITEENRTMA 352 (790)
T ss_pred HhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCC-------------------------cCCCceehh
Confidence 22334455544211 1112356677777766422100 000000 00
Q ss_pred CCCCCCCCCC--ccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCC-C
Q 004098 434 PNIGDGYYDD--EDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-L 510 (774)
Q Consensus 434 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~-~ 510 (774)
.-..+.+|.. ...|.+.+......+|..-.+ .....+..+.|....+... ........|...++..+.+. .
T Consensus 353 ~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~-----l~v~~IPt~kp~~r~d~~~-~i~~~~~~K~~al~~~i~~~~~ 426 (790)
T PRK09200 353 SITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYN-----MEVVQIPTNRPIIRIDYPD-KVFVTLDEKYKAVIEEVKERHE 426 (790)
T ss_pred hhhHHHHHHHhHHHhccCCCChHHHHHHHHHhC-----CcEEECCCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHh
Confidence 0000111111 234555554444444433221 1112222222222111111 11123345666677777553 3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCccc---CCcc-----
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDK---LNVR----- 582 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDi---p~V~----- 582 (774)
...++||||+|++.++.++..|.+.|+++..+||++.++++..+...++.| .|+|||+++|||+|+ |+|.
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL 504 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGL 504 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCc
Confidence 567999999999999999999999999999999999999988888888877 799999999999999 6999
Q ss_pred eEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 583 RIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 583 ~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
+||+|++|.|...|.||+|||||.|.+|.+++|++..|
T Consensus 505 ~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 505 AVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred EEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 99999999999999999999999999999999987654
No 67
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.4e-33 Score=313.99 Aligned_cols=418 Identities=18% Similarity=0.141 Sum_probs=258.7
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHh--
Q 004098 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK-- 235 (774)
Q Consensus 161 l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~-- 235 (774)
+.++.++.+|+ .|+|+|..+++.+++|+ |+.|.||+|||++|.+|++. .++.++||+||++|+.|.++.+..
T Consensus 92 ~rEa~~R~lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 92 VREASGRVLGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred HHHHHHHHhCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 45566678898 58999999999999999 99999999999999999985 478999999999999999988877
Q ss_pred --cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHH-HHHHH-HH----------------------HHHHhcCccE
Q 004098 236 --HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI-RLIKP-LQ----------------------RLAESRGIAL 289 (774)
Q Consensus 236 --~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~-~ll~~-~~----------------------~~~~~~~i~~ 289 (774)
+|+++.++.++.+.. +++ ..-.++|+|+|...+. ++|.. +. ...-...+.+
T Consensus 169 ~~lGlsv~~i~gg~~~~--~r~-~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 169 EALGLTVGCVVEDQSPD--ERR-AAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred hhcCCEEEEEeCCCCHH--HHH-HHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 389999999887643 222 2345799999998774 33321 10 0112356899
Q ss_pred EEEecccccc-c----------CC--CCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCC
Q 004098 290 FAIDEVHCVS-K----------WG--HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSK 356 (774)
Q Consensus 290 iVIDEaH~l~-~----------~g--~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~ 356 (774)
.||||||.++ + .. .+....|..+..+...+....--.+-...+.+.||-. -...+.+.++...
T Consensus 246 aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~----g~~~~e~~~~~l~ 321 (656)
T PRK12898 246 AIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEA----GRARIAELAESLP 321 (656)
T ss_pred eEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHH----HHHHHHHHhCcch
Confidence 9999999873 1 11 1123567766666665543211111223455666643 2222333332210
Q ss_pred CceE-------------EEccCCCCCcEEEEeecC----------CccchhhhHhHHHHHHHHHhhhcccccccccCCCc
Q 004098 357 GTKF-------------VLTSFFRPNLRFSVKHSK----------TSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQD 413 (774)
Q Consensus 357 ~~~~-------------~~~~~~r~~l~~~v~~~~----------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 413 (774)
.... ....++..+..|.|...+ ......|.+-+++.++.-..-.. ....+
T Consensus 322 ~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i-~~e~~------ 394 (656)
T PRK12898 322 PAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCEL-TDPRE------ 394 (656)
T ss_pred hhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCC-CcCce------
Confidence 0000 000112233344443211 01113566667777664221100 00000
Q ss_pred CCCccCccCCCcccccccCCCCCCCCCCCC--ccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchh
Q 004098 414 LDDQSDTSSSSSMSEESRISPNIGDGYYDD--EDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFE 491 (774)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (774)
....--.+.+|.. ...|.+.+......++.....++-. .+..+.+.. +.......
T Consensus 395 -----------------t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv-----~IPt~kp~~-r~~~~~~v 451 (656)
T PRK12898 395 -----------------TLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVV-----RIPTNRPSQ-RRHLPDEV 451 (656)
T ss_pred -----------------eeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeE-----EeCCCCCcc-ceecCCEE
Confidence 0000000111111 2234444433333333332222111 111111111 01111122
Q ss_pred hccccCchhHhhhhccCCC-CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 004098 492 RTDLLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570 (774)
Q Consensus 492 ~~~~~~k~~~ll~~L~~~~-~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~ 570 (774)
......|...+.+.+.... .+.++||||+|++.++.+++.|.+.|+++..+||++.+ |+..+..|..++..|+|||+
T Consensus 452 ~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATd 529 (656)
T PRK12898 452 FLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATN 529 (656)
T ss_pred EeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEcc
Confidence 2234456777777776543 35689999999999999999999999999999998654 44555556666667999999
Q ss_pred ccccCcccC---Ccc-----eEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 571 AFGMGIDKL---NVR-----RIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 571 a~~~GIDip---~V~-----~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
+++||+||+ +|+ +||+|++|.|...|+||+|||||.|.+|.+++|++..|
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 999999999 777 99999999999999999999999999999999998654
No 68
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.9e-33 Score=297.55 Aligned_cols=336 Identities=26% Similarity=0.325 Sum_probs=241.0
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEecCCCchHHHHHH---hhhcc-CCeEEEEccchHHHH
Q 004098 153 IGSDWEVKVNSLLKKHFGHSSLKNFQKEALSA-WLAHHDCLVLAATGSGKSLCFQI---PALLT-GKVVVVISPLISLMH 227 (774)
Q Consensus 153 ~~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~-il~g~d~lv~apTGsGKTl~~~l---pal~~-~~~~LVvsPt~~L~~ 227 (774)
...+++++....|+ ..|++.+.|+|.-++.+ ++.|+|.+|+.+|+|||||+.-+ |-++. +++.|+++|+.+|++
T Consensus 197 deLdipe~fk~~lk-~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALAN 275 (830)
T COG1202 197 DELDIPEKFKRMLK-REGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALAN 275 (830)
T ss_pred cccCCcHHHHHHHH-hcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhc
Confidence 45678888999998 56999999999999998 67899999999999999998654 44444 899999999999999
Q ss_pred HHHHHHHh----cCCcEEEEcCCCChHHHH---HHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc
Q 004098 228 DQCSKLSK----HGVTACFLGSGQPDNKVE---QKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (774)
Q Consensus 228 qq~~~l~~----~gi~~~~l~~~~~~~~~~---~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~ 300 (774)
|.++.|++ +|+.+..-.|.......+ ..-.....||+|+|+|-+--++. .+ -.+.+|..|||||+|.+-+
T Consensus 276 QKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLR--tg-~~lgdiGtVVIDEiHtL~d 352 (830)
T COG1202 276 QKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLR--TG-KDLGDIGTVVIDEIHTLED 352 (830)
T ss_pred chHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHH--cC-CcccccceEEeeeeeeccc
Confidence 99999876 366654333221111100 01112357999999998866655 32 4568899999999999975
Q ss_pred --CCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCC-CcEEEEeec
Q 004098 301 --WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP-NLRFSVKHS 377 (774)
Q Consensus 301 --~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~-~l~~~v~~~ 377 (774)
.||-..-. |+.++..++ ..|++.||||.. +.+++.+.|+.. ...+. .|| ++..++...
T Consensus 353 eERG~RLdGL---I~RLr~l~~---------~AQ~i~LSATVg--Np~elA~~l~a~--lV~y~---~RPVplErHlvf~ 413 (830)
T COG1202 353 EERGPRLDGL---IGRLRYLFP---------GAQFIYLSATVG--NPEELAKKLGAK--LVLYD---ERPVPLERHLVFA 413 (830)
T ss_pred hhcccchhhH---HHHHHHhCC---------CCeEEEEEeecC--ChHHHHHHhCCe--eEeec---CCCCChhHeeeee
Confidence 77644433 344455555 899999999985 446678888754 11111 122 233332222
Q ss_pred CCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhh
Q 004098 378 KTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSV 457 (774)
Q Consensus 378 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (774)
..... -.+-+.++.. .
T Consensus 414 ~~e~e--K~~ii~~L~k----~---------------------------------------------------------- 429 (830)
T COG1202 414 RNESE--KWDIIARLVK----R---------------------------------------------------------- 429 (830)
T ss_pred cCchH--HHHHHHHHHH----H----------------------------------------------------------
Confidence 11100 0111111111 0
Q ss_pred hhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCC
Q 004098 458 EFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGV 537 (774)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~ 537 (774)
+|... ....-.+++|||++||+.|..|+++|..+|+
T Consensus 430 E~~~~--------------------------------------------sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~ 465 (830)
T COG1202 430 EFSTE--------------------------------------------SSKGYRGQTIVFTYSRRRCHELADALTGKGL 465 (830)
T ss_pred HHhhh--------------------------------------------hccCcCCceEEEecchhhHHHHHHHhhcCCc
Confidence 01000 0011356899999999999999999999999
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEE----EeCCCC-CHHHHHHHhhccccCC--Ccc
Q 004098 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRII----HYGWPQ-SLEAYYQEAGRAGRDG--HLA 610 (774)
Q Consensus 538 ~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI----~~d~p~-s~~~y~Qr~GRaGR~G--~~g 610 (774)
++.+||+||+..+|+.+..+|.++++.++|+|-+++.|+|+|. +.|| -++.-| |+.+|.|+.|||||.+ ..|
T Consensus 466 ~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrG 544 (830)
T COG1202 466 KAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRG 544 (830)
T ss_pred ccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCc
Confidence 9999999999999999999999999999999999999999996 4444 234443 8999999999999987 568
Q ss_pred eEEEEeeCCC
Q 004098 611 DCVLYANLSS 620 (774)
Q Consensus 611 ~~il~~~~~~ 620 (774)
.+++++.+..
T Consensus 545 kVyllvepg~ 554 (830)
T COG1202 545 KVYLLVEPGK 554 (830)
T ss_pred eEEEEecCCh
Confidence 8888876553
No 69
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.7e-33 Score=328.13 Aligned_cols=303 Identities=18% Similarity=0.227 Sum_probs=210.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc---CCeEEEEccchHHHHHHHHHHHh-c----CCcEEEEcCCCChH
Q 004098 179 KEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT---GKVVVVISPLISLMHDQCSKLSK-H----GVTACFLGSGQPDN 250 (774)
Q Consensus 179 ~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~---~~~~LVvsPt~~L~~qq~~~l~~-~----gi~~~~l~~~~~~~ 250 (774)
.+.+.++.+++++++.+|||||||.+|.++++.. .+++||+.|+|+++.|.++.+.+ + |..+.....+...
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~- 89 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESK- 89 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccc-
Confidence 4566667778999999999999999999998853 46899999999999999998864 3 3444444443321
Q ss_pred HHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccc-ccCCCCcHHHHHHHHHHHHHhcccccccccC
Q 004098 251 KVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV-SKWGHDFRPDYRRLSVLRENFGANNLKSLKF 329 (774)
Q Consensus 251 ~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l-~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~ 329 (774)
.....+|+|+||++|.+++. . ...+.++++|||||+|.. .+ .|+.-. -+..+.+ .+++
T Consensus 90 ------~~~~t~I~v~T~G~Llr~l~--~-d~~L~~v~~IIlDEaHER~l~--~Dl~L~--ll~~i~~--------~lr~ 148 (812)
T PRK11664 90 ------VGPNTRLEVVTEGILTRMIQ--R-DPELSGVGLVILDEFHERSLQ--ADLALA--LLLDVQQ--------GLRD 148 (812)
T ss_pred ------cCCCCcEEEEChhHHHHHHh--h-CCCcCcCcEEEEcCCCccccc--cchHHH--HHHHHHH--------hCCc
Confidence 12345899999999987765 2 335789999999999973 22 112111 1112222 2334
Q ss_pred CCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhccccccccc
Q 004098 330 DIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSA 409 (774)
Q Consensus 330 ~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 409 (774)
+.++++||||++.+... ..++ +.+.+...... .++....... ... ..+..
T Consensus 149 ~lqlilmSATl~~~~l~---~~~~--~~~~I~~~gr~-~pV~~~y~~~--~~~----~~~~~------------------ 198 (812)
T PRK11664 149 DLKLLIMSATLDNDRLQ---QLLP--DAPVIVSEGRS-FPVERRYQPL--PAH----QRFDE------------------ 198 (812)
T ss_pred cceEEEEecCCCHHHHH---HhcC--CCCEEEecCcc-ccceEEeccC--chh----hhHHH------------------
Confidence 78999999999876433 3332 12222211100 0111000000 000 00000
Q ss_pred CCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccc
Q 004098 410 IPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRS 489 (774)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (774)
.+
T Consensus 199 -------------------------------------------------~v----------------------------- 200 (812)
T PRK11664 199 -------------------------------------------------AV----------------------------- 200 (812)
T ss_pred -------------------------------------------------HH-----------------------------
Confidence 00
Q ss_pred hhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCceEE
Q 004098 490 FERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG---FGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566 (774)
Q Consensus 490 ~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vL 566 (774)
...+...+.+ ..+.+|||++++++++.+++.|.. .++.+..+||+|++++|.++++.|.+|+.+||
T Consensus 201 ---------~~~l~~~l~~--~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVl 269 (812)
T PRK11664 201 ---------ARATAELLRQ--ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVV 269 (812)
T ss_pred ---------HHHHHHHHHh--CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEE
Confidence 0001111111 357899999999999999999987 57889999999999999999999999999999
Q ss_pred EEecccccCcccCCcceEEEeCCCCC------------------HHHHHHHhhccccCCCcceEEEEeeCCCCCc
Q 004098 567 VATIAFGMGIDKLNVRRIIHYGWPQS------------------LEAYYQEAGRAGRDGHLADCVLYANLSSMPT 623 (774)
Q Consensus 567 VAT~a~~~GIDip~V~~VI~~d~p~s------------------~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~~ 623 (774)
|||+++++|||+|+|++||++++++. -.+|.||+|||||. ++|.|+.+|+..+...
T Consensus 270 vATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~ 343 (812)
T PRK11664 270 LATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAER 343 (812)
T ss_pred EecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhh
Confidence 99999999999999999999988753 36899999999999 6999999998665443
No 70
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.6e-33 Score=327.43 Aligned_cols=303 Identities=17% Similarity=0.179 Sum_probs=211.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHh-cC----CcEEEEcCCCCh
Q 004098 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK-HG----VTACFLGSGQPD 249 (774)
Q Consensus 178 Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~-~g----i~~~~l~~~~~~ 249 (774)
-.+.+..+.+++++|+++|||||||.+|.++++. .++++||+.|+|+++.|..+.+.+ ++ ..+.+...+..
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~- 85 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN- 85 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc-
Confidence 3456666777899999999999999999999885 357999999999999999998864 43 33333322221
Q ss_pred HHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccc-cccCCCCcHHHHHHHHHHHHHhccccccccc
Q 004098 250 NKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHC-VSKWGHDFRPDYRRLSVLRENFGANNLKSLK 328 (774)
Q Consensus 250 ~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~-l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~ 328 (774)
......+|+|+||++|.+++.. ...+.++++|||||||. .++.. |.-.+ +..+... ++
T Consensus 86 ------~~s~~t~I~v~T~G~Llr~l~~---d~~L~~v~~VIiDEaHER~L~~D--l~L~l--l~~i~~~--------lr 144 (819)
T TIGR01970 86 ------KVSRRTRLEVVTEGILTRMIQD---DPELDGVGALIFDEFHERSLDAD--LGLAL--ALDVQSS--------LR 144 (819)
T ss_pred ------ccCCCCcEEEECCcHHHHHHhh---CcccccCCEEEEeccchhhhccc--hHHHH--HHHHHHh--------cC
Confidence 1234579999999999877652 24578899999999994 54422 32222 1112222 23
Q ss_pred CCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccc
Q 004098 329 FDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKS 408 (774)
Q Consensus 329 ~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 408 (774)
++.++++||||++..... +.++ +.+.+....... ++....... ... ..+...+
T Consensus 145 ~dlqlIlmSATl~~~~l~---~~l~--~~~vI~~~gr~~-pVe~~y~~~--~~~----~~~~~~v--------------- 197 (819)
T TIGR01970 145 EDLKILAMSATLDGERLS---SLLP--DAPVVESEGRSF-PVEIRYLPL--RGD----QRLEDAV--------------- 197 (819)
T ss_pred CCceEEEEeCCCCHHHHH---HHcC--CCcEEEecCcce-eeeeEEeec--chh----hhHHHHH---------------
Confidence 478999999999876543 3332 122222111000 011000000 000 0000000
Q ss_pred cCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCcc
Q 004098 409 AIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDR 488 (774)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (774)
T Consensus 198 -------------------------------------------------------------------------------- 197 (819)
T TIGR01970 198 -------------------------------------------------------------------------------- 197 (819)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCceE
Q 004098 489 SFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG---FGVKAAAYNASLPKSQLRRVHTEFHENKLEV 565 (774)
Q Consensus 489 ~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~v 565 (774)
...+...+.. ..+.+|||++++.+++.+++.|.+ .++.+..+||+|++++|.++++.|++|+.+|
T Consensus 198 ----------~~~l~~~l~~--~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkV 265 (819)
T TIGR01970 198 ----------SRAVEHALAS--ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKV 265 (819)
T ss_pred ----------HHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEE
Confidence 0001111111 356899999999999999999987 4789999999999999999999999999999
Q ss_pred EEEecccccCcccCCcceEEEeCCCCC------------------HHHHHHHhhccccCCCcceEEEEeeCCCCC
Q 004098 566 VVATIAFGMGIDKLNVRRIIHYGWPQS------------------LEAYYQEAGRAGRDGHLADCVLYANLSSMP 622 (774)
Q Consensus 566 LVAT~a~~~GIDip~V~~VI~~d~p~s------------------~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~ 622 (774)
||||+++++|||+|+|++||++|+|+. -.+|.||+|||||. ++|.|+.+|+..+..
T Consensus 266 lVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 266 VLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred EEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 999999999999999999999999853 45699999999999 899999999865543
No 71
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=2.2e-32 Score=311.62 Aligned_cols=419 Identities=18% Similarity=0.167 Sum_probs=256.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHh--
Q 004098 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK-- 235 (774)
Q Consensus 161 l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~-- 235 (774)
+.++.++.+|. +|+|.+++..+..++..|+.|+||+|||++|.+|+++ .++.++||+|+++|+.|+.+.+..
T Consensus 59 vrEa~~R~lgl---rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~ 135 (762)
T TIGR03714 59 VREADKRVLGM---FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVY 135 (762)
T ss_pred HHHHHHhhcCC---CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHH
Confidence 34455556664 6666666666665666899999999999999999864 577899999999999999999855
Q ss_pred --cCCcEEEEcCCCCh--HHHHHHHHcCCceEEEEChHHHH-HHHHH-HH---HHHHhcCccEEEEecccccc-cC----
Q 004098 236 --HGVTACFLGSGQPD--NKVEQKALRGMYSIIYVCPETVI-RLIKP-LQ---RLAESRGIALFAIDEVHCVS-KW---- 301 (774)
Q Consensus 236 --~gi~~~~l~~~~~~--~~~~~~~~~~~~~Ilv~TPe~l~-~ll~~-~~---~~~~~~~i~~iVIDEaH~l~-~~---- 301 (774)
+|+.+....++... ...........++|+|+||++|. +++.. +. ....+..+.++||||||+|+ +.
T Consensus 136 ~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartp 215 (762)
T TIGR03714 136 EWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTP 215 (762)
T ss_pred hhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCC
Confidence 58888776655221 11112222346899999999993 44432 11 12235789999999999984 11
Q ss_pred ------CCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceE-------------EE
Q 004098 302 ------GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKF-------------VL 362 (774)
Q Consensus 302 ------g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~-------------~~ 362 (774)
...-...|..+..+...+....--.+-.....+.||- .....+.+.|++..-... ..
T Consensus 216 liisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~----~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A 291 (762)
T TIGR03714 216 LVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTD----KGIEKAEQYFKIDNLYSEEYFELVRHINLALRA 291 (762)
T ss_pred eeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecH----hHHHHHHHHcCCCccCChhhHHHHHHHHHHHHH
Confidence 1112335555555555543210000111223344443 333444444443210000 00
Q ss_pred ccCCCCCcEEEEeecC----------CccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCccccccc-
Q 004098 363 TSFFRPNLRFSVKHSK----------TSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESR- 431 (774)
Q Consensus 363 ~~~~r~~l~~~v~~~~----------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 431 (774)
..++..+..|.|...+ .-....|.+-+++.++.-..-. ...+..
T Consensus 292 ~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~-------------------------i~~e~~t 346 (762)
T TIGR03714 292 HYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVE-------------------------LSKETRA 346 (762)
T ss_pred HHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCC-------------------------CCCCcee
Confidence 0122333344433210 0111245555666655321100 000000
Q ss_pred CCCCCCCCCCC--CccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCC
Q 004098 432 ISPNIGDGYYD--DEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP 509 (774)
Q Consensus 432 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~ 509 (774)
.+.--.+.+|. ....|++.+......+|..-.++ ....+..+.|....+ ...........|...++..+.+.
T Consensus 347 ~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l-----~v~~IPt~kp~~r~d-~~d~i~~~~~~K~~ai~~~i~~~ 420 (762)
T TIGR03714 347 MASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSL-----SVVKIPTNKPIIRID-YPDKIYATLPEKLMATLEDVKEY 420 (762)
T ss_pred eeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCC-----CEEEcCCCCCeeeee-CCCeEEECHHHHHHHHHHHHHHH
Confidence 00000111222 24456666665555666543221 122222222221111 11111223345667777777554
Q ss_pred -CCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccC---------
Q 004098 510 -LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKL--------- 579 (774)
Q Consensus 510 -~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip--------- 579 (774)
..+.++||||+|++.++.++..|.+.|+++..+||++.++++..+.++|+.| .|+|||+++|||+|++
T Consensus 421 ~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~G 498 (762)
T TIGR03714 421 HETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELG 498 (762)
T ss_pred hhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccC
Confidence 3566999999999999999999999999999999999999998888888777 7999999999999999
Q ss_pred CcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 580 NVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 580 ~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
.+.+|++|++|..... .||+|||||.|.+|.+++|++..|
T Consensus 499 GL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 499 GLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred CeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccch
Confidence 9999999999988776 999999999999999999998655
No 72
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.5e-32 Score=309.05 Aligned_cols=414 Identities=16% Similarity=0.137 Sum_probs=262.2
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHhc-
Q 004098 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKH- 236 (774)
Q Consensus 161 l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~~- 236 (774)
+.++.++.+|+ .|++.|..+...+++|+ |+.|+||+|||++|.+|++. .+..++||+||..|+.|.++.+.++
T Consensus 45 vrEa~~R~lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 45 VREASKRVLGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred HHHHHHHHhCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 45666678888 58999999988887776 99999999999999999853 4778999999999999999988873
Q ss_pred ---CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHH-HHHHHHH----HHHHHhcCccEEEEeccccccc--------
Q 004098 237 ---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV-IRLIKPL----QRLAESRGIALFAIDEVHCVSK-------- 300 (774)
Q Consensus 237 ---gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l-~~ll~~~----~~~~~~~~i~~iVIDEaH~l~~-------- 300 (774)
|+++..+.++.+..... ..-.++|+|+||.+| .+++... .....+..+.++||||||.++-
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~---~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLi 198 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERR---EAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLI 198 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHH---HhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHh
Confidence 89999999887754322 222479999999999 6666521 1234568899999999999852
Q ss_pred -CCC--CcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEc--------------
Q 004098 301 -WGH--DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT-------------- 363 (774)
Q Consensus 301 -~g~--~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~-------------- 363 (774)
-|. .-...|.....+.+.+....--.+....+.+.|| ....+.+.+.+++.. .+..
T Consensus 199 isg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt----~~G~~~~e~~~~~~~---ly~~~~~~~~~~i~~Al~ 271 (745)
T TIGR00963 199 ISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLT----EKGIKKAEDLLGVDN---LYDLENSPLIHYINNALK 271 (745)
T ss_pred hcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeEC----HHHHHHHHHHcCCcc---ccChhhhHHHHHHHHHHH
Confidence 110 1122344443343333211000111122334444 233334444444321 0100
Q ss_pred --cCCCCCcEEEEeecC----------CccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCccccccc
Q 004098 364 --SFFRPNLRFSVKHSK----------TSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESR 431 (774)
Q Consensus 364 --~~~r~~l~~~v~~~~----------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (774)
.++..+..|.|...+ .-....|.+-+++.++.-..-. ..++..
T Consensus 272 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~-------------------------i~~e~~ 326 (745)
T TIGR00963 272 AKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVE-------------------------IQNENQ 326 (745)
T ss_pred HHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCC-------------------------cCCCce
Confidence 112333444443211 0111345555666654321100 000000
Q ss_pred -CCCCCCCCCCCC--ccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccC
Q 004098 432 -ISPNIGDGYYDD--EDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQE 508 (774)
Q Consensus 432 -~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~ 508 (774)
...-..+.+|.. ...|++.+......+|..-.++ .+..+..+.|....+.. .........|...+++.+.+
T Consensus 327 t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l-----~vv~IPtnkp~~R~d~~-d~i~~t~~~k~~ai~~~i~~ 400 (745)
T TIGR00963 327 TLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNL-----EVVVVPTNRPVIRKDLS-DLVYKTEEEKWKAVVDEIKE 400 (745)
T ss_pred eeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCC-----CEEEeCCCCCeeeeeCC-CeEEcCHHHHHHHHHHHHHH
Confidence 000011112211 3345555554444444432221 11122222222111111 11122233455566665533
Q ss_pred C-CCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCC-------
Q 004098 509 P-LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLN------- 580 (774)
Q Consensus 509 ~-~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~------- 580 (774)
. ..+.|+||||+|+..++.+++.|.+.|+++..+||+ +.+|+..+..|..+...|+|||+++|||+|++.
T Consensus 401 ~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~G 478 (745)
T TIGR00963 401 RHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELG 478 (745)
T ss_pred HHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcC
Confidence 3 356699999999999999999999999999999998 889999999999999999999999999999998
Q ss_pred cceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 581 VRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 581 V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
..+||+++.|.|...|.|++|||||.|.+|.+.+|++..|
T Consensus 479 Gl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 479 GLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred CcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 5599999999999999999999999999999999998765
No 73
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3.8e-33 Score=323.88 Aligned_cols=331 Identities=27% Similarity=0.314 Sum_probs=235.2
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHc-CCCEEEEecCCCchHHHHHHhhhc---c-CCeEEEEccchHHHHHHHH
Q 004098 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLA-HHDCLVLAATGSGKSLCFQIPALL---T-GKVVVVISPLISLMHDQCS 231 (774)
Q Consensus 157 ~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~-g~d~lv~apTGsGKTl~~~lpal~---~-~~~~LVvsPt~~L~~qq~~ 231 (774)
....+.+.++ ..++..+.+.|++++...+- ++|+||++|||+|||+++++.++. . ++++|+|+|+++|+.+.++
T Consensus 16 ~~~~v~~i~~-~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~ 94 (766)
T COG1204 16 LDDRVLEILK-GDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYE 94 (766)
T ss_pred ccHHHHHHhc-cCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHH
Confidence 4556666666 56888899999999988665 599999999999999999988874 2 5799999999999999999
Q ss_pred HHH---hcCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc--CCCCcH
Q 004098 232 KLS---KHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK--WGHDFR 306 (774)
Q Consensus 232 ~l~---~~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~--~g~~fr 306 (774)
++. .+|+++...+++...... .-..++|+|+|||++-.++..... ....+++|||||+|.+.+ .|....
T Consensus 95 ~~~~~~~~GirV~~~TgD~~~~~~----~l~~~~ViVtT~EK~Dsl~R~~~~--~~~~V~lvViDEiH~l~d~~RG~~lE 168 (766)
T COG1204 95 EFSRLEELGIRVGISTGDYDLDDE----RLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLGDRTRGPVLE 168 (766)
T ss_pred HhhhHHhcCCEEEEecCCcccchh----hhccCCEEEEchHHhhHhhhcCcc--hhhcccEEEEeeeeecCCcccCceeh
Confidence 999 579999999998775331 124579999999999877663222 457899999999999975 454444
Q ss_pred HHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCC-cEEEEeecCCccchhh
Q 004098 307 PDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPN-LRFSVKHSKTSSRASY 385 (774)
Q Consensus 307 ~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~-l~~~v~~~~~~~~~~~ 385 (774)
....++... ...+++++||||.+ ...++..+|+-.. + .+..+|. +.-.+....
T Consensus 169 ~iv~r~~~~------------~~~~rivgLSATlp--N~~evA~wL~a~~----~-~~~~rp~~l~~~v~~~~------- 222 (766)
T COG1204 169 SIVARMRRL------------NELIRIVGLSATLP--NAEEVADWLNAKL----V-ESDWRPVPLRRGVPYVG------- 222 (766)
T ss_pred hHHHHHHhh------------CcceEEEEEeeecC--CHHHHHHHhCCcc----c-ccCCCCcccccCCccce-------
Confidence 444443221 11479999999996 4577888986542 1 2222221 111110000
Q ss_pred hHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCC
Q 004098 386 KKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSV 465 (774)
Q Consensus 386 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 465 (774)
.++.. ....+
T Consensus 223 ----------------------~~~~~------------------------------------~~~~k------------ 232 (766)
T COG1204 223 ----------------------AFLGA------------------------------------DGKKK------------ 232 (766)
T ss_pred ----------------------EEEEe------------------------------------cCccc------------
Confidence 00000 00000
Q ss_pred cccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccC-CCCCCcEEEEeCchHHHHHHHHHHHh----------
Q 004098 466 DDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQE-PLEDGLTIIYVPTRKETLSIAKYLCG---------- 534 (774)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~-~~~~~~~IIF~~sr~~~~~l~~~L~~---------- 534 (774)
..........++++.. ...++++||||+||+.+...|+.|..
T Consensus 233 ---------------------------~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~ 285 (766)
T COG1204 233 ---------------------------TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDE 285 (766)
T ss_pred ---------------------------cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhh
Confidence 0000001111111111 12567999999999999999999883
Q ss_pred -----------C----------------CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEE--
Q 004098 535 -----------F----------------GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRII-- 585 (774)
Q Consensus 535 -----------~----------------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI-- 585 (774)
. -..+..+|+||+.++|..+.+.|+.|+++|||||..++.|+|+|.-++||
T Consensus 286 ~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~ 365 (766)
T COG1204 286 KIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKD 365 (766)
T ss_pred hhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEee
Confidence 0 12468899999999999999999999999999999999999999765555
Q ss_pred --EeC-----CCCCHHHHHHHhhccccCC--CcceEEEEee
Q 004098 586 --HYG-----WPQSLEAYYQEAGRAGRDG--HLADCVLYAN 617 (774)
Q Consensus 586 --~~d-----~p~s~~~y~Qr~GRaGR~G--~~g~~il~~~ 617 (774)
.|+ .+-++-+|+|+.|||||.| ..|.++++.+
T Consensus 366 ~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~ 406 (766)
T COG1204 366 TRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILAT 406 (766)
T ss_pred eEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEec
Confidence 566 5667899999999999988 5577777763
No 74
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=7.7e-32 Score=327.07 Aligned_cols=298 Identities=23% Similarity=0.294 Sum_probs=199.1
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhh----ccCCeEEEEccchHHHHHHHHHHH
Q 004098 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL----LTGKVVVVISPLISLMHDQCSKLS 234 (774)
Q Consensus 159 ~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal----~~~~~~LVvsPt~~L~~qq~~~l~ 234 (774)
.+..+.+++..|+ .|+++|+.+++.++.|+|++++||||+|||+ |.+|++ ..++++|||+||++|+.|+++.+.
T Consensus 65 ~~f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 65 KEFEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHH
Confidence 3455556655666 6999999999999999999999999999997 556654 247899999999999999999998
Q ss_pred hc----CCcEE---EEcCCCChHHH---HHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCC-
Q 004098 235 KH----GVTAC---FLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH- 303 (774)
Q Consensus 235 ~~----gi~~~---~l~~~~~~~~~---~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~- 303 (774)
++ ++... .++|+.+.... ...+..+.++|+|+||++|.+.+..+ .. .++++||||||+|++++.
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l----~~-~~~~iVvDEaD~~L~~~k~ 217 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL----GP-KFDFIFVDDVDALLKASKN 217 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh----cC-CCCEEEEeChHhhhhcccc
Confidence 85 44433 35677665432 22344567999999999987655421 11 799999999999998542
Q ss_pred --------CcHHH-HHHHHHHHH------------HhcccccccccCCCC--EEEEeccC-CHHHHHHHHHHcCCCCCce
Q 004098 304 --------DFRPD-YRRLSVLRE------------NFGANNLKSLKFDIP--LMALTATA-TIQVREDILKSLHMSKGTK 359 (774)
Q Consensus 304 --------~fr~~-~~~l~~l~~------------~~~~~~~~~l~~~~~--il~lTAT~-~~~~~~~i~~~L~~~~~~~ 359 (774)
.|.++ +..+..+.. ... ..+..++...| ++++|||+ +..+...+...+
T Consensus 218 vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~l------- 289 (1171)
T TIGR01054 218 VDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRL-ELLEAIPGKKRGCLIVSSATGRPRGKRAKLFREL------- 289 (1171)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHH-HHHHhhhhccCcEEEEEeCCCCccccHHHHcccc-------
Confidence 26653 233211100 000 00112233444 56789995 444332221111
Q ss_pred EEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCC
Q 004098 360 FVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDG 439 (774)
Q Consensus 360 ~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (774)
+.+.+...... +.+
T Consensus 290 ----------l~~~v~~~~~~--------~r~------------------------------------------------ 303 (1171)
T TIGR01054 290 ----------LGFEVGGGSDT--------LRN------------------------------------------------ 303 (1171)
T ss_pred ----------cceEecCcccc--------ccc------------------------------------------------
Confidence 11111110000 000
Q ss_pred CCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEe
Q 004098 440 YYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYV 519 (774)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~ 519 (774)
+.++.. ....+...++++|... +..+||||
T Consensus 304 -------------------------I~~~~~-----------------------~~~~~~~~L~~ll~~l--~~~~IVFv 333 (1171)
T TIGR01054 304 -------------------------VVDVYV-----------------------EDEDLKETLLEIVKKL--GTGGIVYV 333 (1171)
T ss_pred -------------------------eEEEEE-----------------------ecccHHHHHHHHHHHc--CCCEEEEE
Confidence 000000 0000012233333322 35799999
Q ss_pred Cch---HHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEe----cccccCcccCC-cceEEEeCCCC
Q 004098 520 PTR---KETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVAT----IAFGMGIDKLN-VRRIIHYGWPQ 591 (774)
Q Consensus 520 ~sr---~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT----~a~~~GIDip~-V~~VI~~d~p~ 591 (774)
+++ +.|+++++.|.+.|+++..+||++++ .++++|++|+++||||| ++++||||+|+ |++|||||+|+
T Consensus 334 ~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 334 SIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred eccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 999 99999999999999999999999973 68999999999999995 99999999999 89999999996
No 75
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=1.6e-32 Score=299.24 Aligned_cols=403 Identities=16% Similarity=0.165 Sum_probs=297.2
Q ss_pred CCCCCCHHHHHHHHHHHc----CCCEEEEecCCCchHHHH--HHhhh----ccCCeEEEEccchHHHHHHHHHHHhc--C
Q 004098 170 GHSSLKNFQKEALSAWLA----HHDCLVLAATGSGKSLCF--QIPAL----LTGKVVVVISPLISLMHDQCSKLSKH--G 237 (774)
Q Consensus 170 g~~~~r~~Q~~ai~~il~----g~d~lv~apTGsGKTl~~--~lpal----~~~~~~LVvsPt~~L~~qq~~~l~~~--g 237 (774)
+-..+|+||.+.++|+.+ |-|+|+...+|.|||+-. +|..+ ...+..||++|. +-..+|++++++| +
T Consensus 164 ~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~-StL~NW~~Ef~rf~P~ 242 (971)
T KOG0385|consen 164 KGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPK-STLDNWMNEFKRFTPS 242 (971)
T ss_pred cCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeH-hhHHHHHHHHHHhCCC
Confidence 334799999999999874 789999999999999732 22222 236889999996 6668999999998 5
Q ss_pred CcEEEEcCCCChHH--HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHH
Q 004098 238 VTACFLGSGQPDNK--VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVL 315 (774)
Q Consensus 238 i~~~~l~~~~~~~~--~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l 315 (774)
++++.++|+..... .+.....+.++|+++|+|+.++. ...+..-.|.|+||||||++.. .-..|...
T Consensus 243 l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d----k~~lk~~~W~ylvIDEaHRiKN-------~~s~L~~~ 311 (971)
T KOG0385|consen 243 LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD----KSFLKKFNWRYLVIDEAHRIKN-------EKSKLSKI 311 (971)
T ss_pred cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh----HHHHhcCCceEEEechhhhhcc-------hhhHHHHH
Confidence 88888887764322 22223456899999999998764 3445556799999999999965 33455566
Q ss_pred HHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEcc-CCCCCcEEEEeecCCccchhhhHhHHHHHH
Q 004098 316 RENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTS-FFRPNLRFSVKHSKTSSRASYKKDFCQLID 394 (774)
Q Consensus 316 ~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~-~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~ 394 (774)
.+.|. ..-.|++|+||.++...+++..|++. -|.+|... .+...+... ...........++.++.
T Consensus 312 lr~f~---------~~nrLLlTGTPLQNNL~ELWaLLnFl-lPdiF~~~e~F~swF~~~----~~~~~~e~v~~Lh~vL~ 377 (971)
T KOG0385|consen 312 LREFK---------TDNRLLLTGTPLQNNLHELWALLNFL-LPDIFNSAEDFDSWFDFT----NCEGDQELVSRLHKVLR 377 (971)
T ss_pred HHHhc---------ccceeEeeCCcccccHHHHHHHHHhh-chhhccCHHHHHHHHccc----ccccCHHHHHHHHhhhh
Confidence 66665 45689999999999999999999886 34444431 111111111 11111235667888888
Q ss_pred HHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCc------c-CCCCCCccchhhhhhhcCCCcc
Q 004098 395 IYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDE------D-VGNSPMGKEMSVEFLENDSVDD 467 (774)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~l~~~~~~~ 467 (774)
.+..++.+......+.++..-.. ......++..||... . .+.....+..+.. .+.+
T Consensus 378 pFlLRR~K~dVe~sLppKkE~~i------------yvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~N-----I~mQ 440 (971)
T KOG0385|consen 378 PFLLRRIKSDVEKSLPPKKELII------------YVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQN-----IMMQ 440 (971)
T ss_pred HHHHHHHHHhHhhcCCCcceeeE------------eccchHHHHHHHHHHHHhcchhhcccccchhhHHHH-----HHHH
Confidence 88877776666665544322221 011111222222110 0 0111112222222 3457
Q ss_pred cccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCC--CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCC
Q 004098 468 WDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL--EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNAS 545 (774)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~--~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~ 545 (774)
.+.+|.+.+.....++++++...+++.....+..+|+.|+..+ .+.++|||.+..+..+.|.+|+.-+++..+.+.|.
T Consensus 441 LRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGS 520 (971)
T KOG0385|consen 441 LRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGS 520 (971)
T ss_pred HHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCC
Confidence 8899999999999999999999999988887777777665544 45699999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcC---CceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEE
Q 004098 546 LPKSQLRRVHTEFHEN---KLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (774)
Q Consensus 546 l~~~~R~~~~~~F~~g---~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~ 615 (774)
++.++|...++.|... ++-+|++|.|+|.|||+...+.||.||..||+..-+|.+.||+|.|+...+++|
T Consensus 521 t~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 521 TSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred CCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 9999999999999843 678999999999999999999999999999999999999999999999988876
No 76
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-33 Score=268.62 Aligned_cols=302 Identities=20% Similarity=0.276 Sum_probs=222.7
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc------CCeEEEEccchHHHH
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLISLMH 227 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~------~~~~LVvsPt~~L~~ 227 (774)
.+-+.+++..++. ..||..|...|.++||..+-|.|++..|..|.|||.+|.|..|+. ...+||+|.||+|+-
T Consensus 46 dfllkpellraiv-dcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelaf 124 (387)
T KOG0329|consen 46 DFLLKPELLRAIV-DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAF 124 (387)
T ss_pred hhhcCHHHHHHHH-hccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHH
Confidence 4556677777777 579999999999999999989999999999999999999988864 347899999999999
Q ss_pred HHHHHHHhc-----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCC
Q 004098 228 DQCSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWG 302 (774)
Q Consensus 228 qq~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g 302 (774)
|+.++..+| ++++..+.||......+..+. .-++|+|+||++++.+.. .+.++++++..+|+|||+.|++|-
T Consensus 125 qi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk-~~PhivVgTPGrilALvr--~k~l~lk~vkhFvlDEcdkmle~l 201 (387)
T KOG0329|consen 125 QISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLK-NCPHIVVGTPGRILALVR--NRSLNLKNVKHFVLDECDKMLEQL 201 (387)
T ss_pred HHHHHHHHHHhhCCCceEEEEEcceeccccHHHHh-CCCeEEEcCcHHHHHHHH--hccCchhhcceeehhhHHHHHHHH
Confidence 999998886 578888888887654444443 478999999999998887 777889999999999999998743
Q ss_pred CCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccc
Q 004098 303 HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382 (774)
Q Consensus 303 ~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~ 382 (774)
+.|.+...| +...|+..|++.+|||.+.+.+.-..+.+ .+++.+.|....
T Consensus 202 -DMrRDvQEi-----------fr~tp~~KQvmmfsatlskeiRpvC~kFm--------------QdPmEi~vDdE~---- 251 (387)
T KOG0329|consen 202 -DMRRDVQEI-----------FRMTPHEKQVMMFSATLSKEIRPVCHKFM--------------QDPMEIFVDDEA---- 251 (387)
T ss_pred -HHHHHHHHH-----------hhcCcccceeeeeeeecchhhHHHHHhhh--------------cCchhhhccchh----
Confidence 245555555 33345688999999999988776443333 222222221100
Q ss_pred hhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhc
Q 004098 383 ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (774)
Q Consensus 383 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (774)
.--++-+.+.|.
T Consensus 252 ---KLtLHGLqQ~Yv----------------------------------------------------------------- 263 (387)
T KOG0329|consen 252 ---KLTLHGLQQYYV----------------------------------------------------------------- 263 (387)
T ss_pred ---hhhhhhHHHHHH-----------------------------------------------------------------
Confidence 000111111111
Q ss_pred CCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEe
Q 004098 463 DSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542 (774)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~ 542 (774)
.+...+|..++.++| ..+.-..++||+.+... |
T Consensus 264 -----------------------------kLke~eKNrkl~dLL-d~LeFNQVvIFvKsv~R-------l---------- 296 (387)
T KOG0329|consen 264 -----------------------------KLKENEKNRKLNDLL-DVLEFNQVVIFVKSVQR-------L---------- 296 (387)
T ss_pred -----------------------------hhhhhhhhhhhhhhh-hhhhhcceeEeeehhhh-------h----------
Confidence 011122222233322 23355689999988765 1
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCCC
Q 004098 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622 (774)
Q Consensus 543 h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~ 622 (774)
+ | .-+ +|||++||||+|+..|+.|+|||+|.+..+|+||+|||||.|..|.++.|++.....
T Consensus 297 ----~----------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da 358 (387)
T KOG0329|consen 297 ----S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDA 358 (387)
T ss_pred ----h----------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhH
Confidence 0 2 123 899999999999999999999999999999999999999999999999998755443
No 77
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.7e-31 Score=314.77 Aligned_cols=407 Identities=13% Similarity=0.153 Sum_probs=234.3
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEecCCCchHHHHHHhhh---cc--CCeEEEEccchHHHHHHHHHHH-hcCCcEEEEc
Q 004098 173 SLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQIPAL---LT--GKVVVVISPLISLMHDQCSKLS-KHGVTACFLG 244 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g--~d~lv~apTGsGKTl~~~lpal---~~--~~~~LVvsPt~~L~~qq~~~l~-~~gi~~~~l~ 244 (774)
.|.|+|.+++..++.. ..+|+...+|.|||+-+.+.+. .. ..++|||||. +|+.||..++. ++++....+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~~ 230 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLFD 230 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEEc
Confidence 5899999999887753 4799999999999987665542 22 3689999997 99999999995 4788776665
Q ss_pred CCCChHHHHH-HHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccc
Q 004098 245 SGQPDNKVEQ-KALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANN 323 (774)
Q Consensus 245 ~~~~~~~~~~-~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~ 323 (774)
++........ .......+++|+|.+.+.+.-.. ...+....|++|||||||++......-...|..+..+...
T Consensus 231 ~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~-~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~----- 304 (956)
T PRK04914 231 EERYAEAQHDADNPFETEQLVICSLDFLRRNKQR-LEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEV----- 304 (956)
T ss_pred CcchhhhcccccCccccCcEEEEEHHHhhhCHHH-HHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhc-----
Confidence 4432110000 00011358999999988642221 1223345799999999999962111112346666555432
Q ss_pred cccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHh------HHHHHHHHH
Q 004098 324 LKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKD------FCQLIDIYT 397 (774)
Q Consensus 324 ~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~------l~~l~~~~~ 397 (774)
...+++|||||.....++++..|.+.++.. +.. ...|... +..++..+.
T Consensus 305 ------~~~~LLLTATP~q~~~~e~falL~lLdP~~-f~~------------------~~~F~~e~~~~~~~a~~v~~l~ 359 (956)
T PRK04914 305 ------IPGVLLLTATPEQLGQESHFARLRLLDPDR-FHD------------------YEAFVEEQQQYRPVADAVQALL 359 (956)
T ss_pred ------cCCEEEEEcCcccCCcHHHHHhhhhhCCCc-CCC------------------HHHHHHHHHhhHHHHHHHHHHh
Confidence 346899999999988999999988764322 210 0011110 111111111
Q ss_pred hhhccccccc----ccCCC-cCCCccC-ccC--CCcccccccCCCCCCCC------CC--CCccCCCCCCccchhhhhhh
Q 004098 398 KKKKTGEKEK----SAIPQ-DLDDQSD-TSS--SSSMSEESRISPNIGDG------YY--DDEDVGNSPMGKEMSVEFLE 461 (774)
Q Consensus 398 ~~~~~~~~~~----~~~~~-~~~~~~~-~~~--~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~l~ 461 (774)
.......... .+++. .+...-. ... .............+.+. .+ ....+...+........+
T Consensus 360 ~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l-- 437 (956)
T PRK04914 360 AGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPL-- 437 (956)
T ss_pred cCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeec--
Confidence 0000000000 00000 0000000 000 00000000000000000 00 000011011000000000
Q ss_pred cCCCccccccccc-ccCCCCCCCC-CCccch-------hhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHH
Q 004098 462 NDSVDDWDVACGE-FYGHSPHRDR-DTDRSF-------ERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYL 532 (774)
Q Consensus 462 ~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~-------~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L 532 (774)
..-.+|...... ... ..... .+.... .......|...++++|+.. ...++||||+++..++.|++.|
T Consensus 438 -~~~~~y~~~~~~~~~~--~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L 513 (956)
T PRK04914 438 -PLPEQYQTAIKVSLEA--RARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQAL 513 (956)
T ss_pred -CCCHHHHHHHHHhHHH--HHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHH
Confidence 000001000000 000 00000 000000 0111224555666666554 4679999999999999999999
Q ss_pred H-hCCCceEEecCCCCHHHHHHHHHHHhcC--CceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCc
Q 004098 533 C-GFGVKAAAYNASLPKSQLRRVHTEFHEN--KLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609 (774)
Q Consensus 533 ~-~~g~~~~~~h~~l~~~~R~~~~~~F~~g--~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~ 609 (774)
+ ..|+++..|||+|++.+|.++++.|+++ ..+|||||+++++|+|++.+++|||||+|+|++.|.||+||+||.|+.
T Consensus 514 ~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~ 593 (956)
T PRK04914 514 REREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQK 593 (956)
T ss_pred hhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCC
Confidence 4 5799999999999999999999999974 699999999999999999999999999999999999999999999999
Q ss_pred ceEEEEee
Q 004098 610 ADCVLYAN 617 (774)
Q Consensus 610 g~~il~~~ 617 (774)
+.+.+++.
T Consensus 594 ~~V~i~~~ 601 (956)
T PRK04914 594 HDIQIHVP 601 (956)
T ss_pred ceEEEEEc
Confidence 98877653
No 78
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.9e-31 Score=302.64 Aligned_cols=313 Identities=17% Similarity=0.150 Sum_probs=203.9
Q ss_pred CCCHHHHHHHHHHHc-C--CCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcC-C---cEEEEcC
Q 004098 173 SLKNFQKEALSAWLA-H--HDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHG-V---TACFLGS 245 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~-g--~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~g-i---~~~~l~~ 245 (774)
.+||||.+++.++.. | +..++++|||+|||++.+..+....+.+|||||+..|+.||.+++.++. + .+..+++
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg 334 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTS 334 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 699999999999884 3 4789999999999999877666667889999999999999999999973 2 3334444
Q ss_pred CCChHHHHHHHHcCCceEEEEChHHHHHHHH------HHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHh
Q 004098 246 GQPDNKVEQKALRGMYSIIYVCPETVIRLIK------PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENF 319 (774)
Q Consensus 246 ~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~------~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~ 319 (774)
+.... ..+...|+|+|++++..... .....+....|++||+||||++. .+.++++.. .+
T Consensus 335 ~~k~~------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp------A~~fr~il~---~l 399 (732)
T TIGR00603 335 DAKER------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP------AAMFRRVLT---IV 399 (732)
T ss_pred Ccccc------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc------HHHHHHHHH---hc
Confidence 32111 12346899999998853211 11123334579999999999994 334444321 12
Q ss_pred cccccccccCCCCEEEEeccCCHHHH--HHHHHHcCCCCCceEEEc--------cCCCCCcEEEEeecCCccchhhhHhH
Q 004098 320 GANNLKSLKFDIPLMALTATATIQVR--EDILKSLHMSKGTKFVLT--------SFFRPNLRFSVKHSKTSSRASYKKDF 389 (774)
Q Consensus 320 ~~~~~~~l~~~~~il~lTAT~~~~~~--~~i~~~L~~~~~~~~~~~--------~~~r~~l~~~v~~~~~~~~~~~~~~l 389 (774)
. ....|+|||||..+.. .++...+| +.++.. .+..+.-.+.|..... ..
T Consensus 400 ~---------a~~RLGLTATP~ReD~~~~~L~~LiG----P~vye~~~~eLi~~G~LA~~~~~ev~v~~t-------~~- 458 (732)
T TIGR00603 400 Q---------AHCKLGLTATLVREDDKITDLNFLIG----PKLYEANWMELQKKGFIANVQCAEVWCPMT-------PE- 458 (732)
T ss_pred C---------cCcEEEEeecCcccCCchhhhhhhcC----CeeeecCHHHHHhCCccccceEEEEEecCC-------HH-
Confidence 1 3468999999964321 11211121 111111 1111111111111000 00
Q ss_pred HHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccc
Q 004098 390 CQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWD 469 (774)
Q Consensus 390 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 469 (774)
...+|+.......+
T Consensus 459 -----------------------------------------------------------------~~~~yl~~~~~~k~- 472 (732)
T TIGR00603 459 -----------------------------------------------------------------FYREYLRENSRKRM- 472 (732)
T ss_pred -----------------------------------------------------------------HHHHHHHhcchhhh-
Confidence 01111111000000
Q ss_pred cccccccCCCCCCCCCCccchhhccccCchhHhhhhccCC-CCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCH
Q 004098 470 VACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPK 548 (774)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~-~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~ 548 (774)
.. ......|...+..++... ..+.++||||.+...++.++..|. +..+||++++
T Consensus 473 -------------------~l-~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~ 527 (732)
T TIGR00603 473 -------------------LL-YVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQ 527 (732)
T ss_pred -------------------HH-hhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCH
Confidence 00 000112222222222221 156799999999999999999882 4668999999
Q ss_pred HHHHHHHHHHhcC-CceEEEEecccccCcccCCcceEEEeCCC-CCHHHHHHHhhccccCCCcceE
Q 004098 549 SQLRRVHTEFHEN-KLEVVVATIAFGMGIDKLNVRRIIHYGWP-QSLEAYYQEAGRAGRDGHLADC 612 (774)
Q Consensus 549 ~~R~~~~~~F~~g-~~~vLVAT~a~~~GIDip~V~~VI~~d~p-~s~~~y~Qr~GRaGR~G~~g~~ 612 (774)
.+|.+++++|++| .+++||+|+++++|||+|++++||+++.| .|...|+||+||++|.+..|.+
T Consensus 528 ~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~ 593 (732)
T TIGR00603 528 QERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDA 593 (732)
T ss_pred HHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCcc
Confidence 9999999999975 88999999999999999999999999998 5999999999999999877664
No 79
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.98 E-value=2.7e-32 Score=279.41 Aligned_cols=317 Identities=14% Similarity=0.214 Sum_probs=208.2
Q ss_pred CCeEEEEccchHHHHHHHHHHHhcC-------CcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhc
Q 004098 213 GKVVVVISPLISLMHDQCSKLSKHG-------VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESR 285 (774)
Q Consensus 213 ~~~~LVvsPt~~L~~qq~~~l~~~g-------i~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~ 285 (774)
.+.+||+-|.++|++|..+.+++|. ++...+.+|...+. +...+..+.+|+|.||+++.+.++ .+++.+.
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~-Q~~ql~~g~~ivvGtpgRl~~~is--~g~~~lt 362 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRT-QCKQLKDGTHIVVGTPGRLLQPIS--KGLVTLT 362 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHH-HHHHhhcCceeeecCchhhhhhhh--ccceeee
Confidence 3579999999999999999777652 23445555554444 344455668999999999999888 7777788
Q ss_pred CccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCH-HHHHHHHHHcCCCCCceEEEcc
Q 004098 286 GIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATI-QVREDILKSLHMSKGTKFVLTS 364 (774)
Q Consensus 286 ~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~-~~~~~i~~~L~~~~~~~~~~~~ 364 (774)
.++++|+|||+-++..| +...+.++...+..+... ..+.|.+.+|||+.. ++..--.+.++++.....-...
T Consensus 363 ~crFlvlDead~lL~qg--y~d~I~r~h~qip~~tsd-----g~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD 435 (725)
T KOG0349|consen 363 HCRFLVLDEADLLLGQG--YDDKIYRFHGQIPHMTSD-----GFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED 435 (725)
T ss_pred eeEEEEecchhhhhhcc--cHHHHHHHhccchhhhcC-----CcccccceeeeEEeEEEeeehhhhhccCceeEeccccc
Confidence 89999999999998877 455444443333222211 236789999999854 2222222334443222222233
Q ss_pred CCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCc
Q 004098 365 FFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDE 444 (774)
Q Consensus 365 ~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (774)
.....++..|.........+| .++++.+..- .+...+........++.+.
T Consensus 436 ~vpetvHhvv~lv~p~~d~sw-~~lr~~i~td----------------~vh~kdn~~pg~~Spe~~s------------- 485 (725)
T KOG0349|consen 436 LVPETVHHVVKLVCPSVDGSW-CDLRQFIETD----------------KVHTKDNLLPGQVSPENPS------------- 485 (725)
T ss_pred ccchhhccceeecCCccCccH-HHHhhhhccC----------------CcccccccccccCCCCChh-------------
Confidence 333444444443333332222 2222222110 0000000000000000000
Q ss_pred cCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHH
Q 004098 445 DVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKE 524 (774)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~ 524 (774)
.....+..+ .-+..+.+ ....++||||.|+..
T Consensus 486 ----------~a~kilkgE-------------------------------------y~v~ai~~-h~mdkaiifcrtk~d 517 (725)
T KOG0349|consen 486 ----------SATKILKGE-------------------------------------YGVVAIRR-HAMDKAIIFCRTKQD 517 (725)
T ss_pred ----------hhhHHhcCc-------------------------------------hhhhhhhh-hccCceEEEEecccc
Confidence 011111110 00011111 144689999999999
Q ss_pred HHHHHHHHHhCC---CceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhh
Q 004098 525 TLSIAKYLCGFG---VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAG 601 (774)
Q Consensus 525 ~~~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~G 601 (774)
|+.|.++|.++| +.|.++||+..+.+|.+.++.|+.+++++||||++++|||||..+-++|+..+|....+|+||||
T Consensus 518 cDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrig 597 (725)
T KOG0349|consen 518 CDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIG 597 (725)
T ss_pred chHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhh
Confidence 999999999864 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcceEEEEee
Q 004098 602 RAGRDGHLADCVLYAN 617 (774)
Q Consensus 602 RaGR~G~~g~~il~~~ 617 (774)
|.||+.+-|.+|.++.
T Consensus 598 rvgraermglaislva 613 (725)
T KOG0349|consen 598 RVGRAERMGLAISLVA 613 (725)
T ss_pred ccchhhhcceeEEEee
Confidence 9999999999998864
No 80
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=5.5e-31 Score=311.30 Aligned_cols=399 Identities=14% Similarity=0.141 Sum_probs=252.1
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEecCCCchHHHHHHhh--hc----cCCeEEEEccchHHHHHHHHHHHhcC--CcE
Q 004098 173 SLKNFQKEALSAWL----AHHDCLVLAATGSGKSLCFQIPA--LL----TGKVVVVISPLISLMHDQCSKLSKHG--VTA 240 (774)
Q Consensus 173 ~~r~~Q~~ai~~il----~g~d~lv~apTGsGKTl~~~lpa--l~----~~~~~LVvsPt~~L~~qq~~~l~~~g--i~~ 240 (774)
.++|||.+++.+++ .|.++|++..+|.|||+..+..+ +. ..+.+|||+|. +|+.+|.+++.++. +.+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 79999999999986 47899999999999998643322 22 24679999995 88999999999973 455
Q ss_pred EEEcCCCChHHHH--HHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHH
Q 004098 241 CFLGSGQPDNKVE--QKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLREN 318 (774)
Q Consensus 241 ~~l~~~~~~~~~~--~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~ 318 (774)
+.+++........ ..+..+.++|+|+|++++.+... .+....|.+|||||||++.... ..+......
T Consensus 248 ~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~----~L~k~~W~~VIvDEAHrIKN~~-------Sklskalr~ 316 (1033)
T PLN03142 248 VKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT----ALKRFSWRYIIIDEAHRIKNEN-------SLLSKTMRL 316 (1033)
T ss_pred EEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH----HhccCCCCEEEEcCccccCCHH-------HHHHHHHHH
Confidence 5565543322211 12234568999999998875433 3334579999999999996522 222223333
Q ss_pred hcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEcc-CCCCCcEEEEeecCCccchhhhHhHHHHHHHHH
Q 004098 319 FGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTS-FFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYT 397 (774)
Q Consensus 319 ~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~-~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~ 397 (774)
+. ....++|||||.++...+++..|.+..+. ++... .+... +.. ............++.++..+.
T Consensus 317 L~---------a~~RLLLTGTPlqNnl~ELwsLL~FL~P~-~f~s~~~F~~~--f~~--~~~~~~~e~i~~L~~~L~pf~ 382 (1033)
T PLN03142 317 FS---------TNYRLLITGTPLQNNLHELWALLNFLLPE-IFSSAETFDEW--FQI--SGENDQQEVVQQLHKVLRPFL 382 (1033)
T ss_pred hh---------cCcEEEEecCCCCCCHHHHHHHHhcCCCC-cCCCHHHHHHH--Hcc--ccccchHHHHHHHHHHhhHHH
Confidence 33 44579999999999999999999876332 22110 00000 000 001111233445566665555
Q ss_pred hhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCc------cCCCCCCccchhhhhhhcCCCcccccc
Q 004098 398 KKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDE------DVGNSPMGKEMSVEFLENDSVDDWDVA 471 (774)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~ 471 (774)
.++........+.++....+ . .........+|... ...... ....+... +.+....
T Consensus 383 LRR~KsdV~~~LPpK~e~iv-~-----------v~LS~~Qk~lY~~ll~k~~~~l~~g~-~~~~Llni-----lmqLRk~ 444 (1033)
T PLN03142 383 LRRLKSDVEKGLPPKKETIL-K-----------VGMSQMQKQYYKALLQKDLDVVNAGG-ERKRLLNI-----AMQLRKC 444 (1033)
T ss_pred hhhhHHHHhhhCCCceeEEE-e-----------eCCCHHHHHHHHHHHHHHHHHHhccc-cHHHHHHH-----HHHHHHH
Confidence 44433332222111110000 0 00000011111000 000000 01111111 2234556
Q ss_pred cccccCCCCCCCCCCccchhhcc-ccCchhHhhhhccCCC-CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHH
Q 004098 472 CGEFYGHSPHRDRDTDRSFERTD-LLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKS 549 (774)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~ll~~L~~~~-~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~ 549 (774)
|.+.+......+..+......+. .+.|...+..+|.... .+.++|||++.....+.|.++|...|+.+..+||+++..
T Consensus 445 cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~ 524 (1033)
T PLN03142 445 CNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGE 524 (1033)
T ss_pred hCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHH
Confidence 76666544444333333332222 2344433333333322 356999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC---CceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEE
Q 004098 550 QLRRVHTEFHEN---KLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (774)
Q Consensus 550 ~R~~~~~~F~~g---~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~ 615 (774)
+|..++++|... .+.+|++|.++|.|||+..+++||+||+|||+..+.|++||++|.|+...+.+|
T Consensus 525 eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~Vy 593 (1033)
T PLN03142 525 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVF 593 (1033)
T ss_pred HHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEE
Confidence 999999999753 457899999999999999999999999999999999999999999999887665
No 81
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=1.2e-29 Score=295.99 Aligned_cols=368 Identities=19% Similarity=0.192 Sum_probs=231.9
Q ss_pred CCCHHHHHHHHHHHcC---CCEEEEecCCCchHHHHHHhh---hccCCeEEEEccchHHHHHHHHHHHh-cCCcEEEEcC
Q 004098 173 SLKNFQKEALSAWLAH---HDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSK-HGVTACFLGS 245 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g---~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~L~~qq~~~l~~-~gi~~~~l~~ 245 (774)
.++++|.++++.++++ +++++.+|||+|||.+|+.++ +..++.+||++|+++|+.|+++.+++ +|+.+..+++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s 223 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHS 223 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5899999999999974 789999999999999998765 34688999999999999999999987 6889999999
Q ss_pred CCChHHH---HHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHH--HHHHHHHHHHhc
Q 004098 246 GQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPD--YRRLSVLRENFG 320 (774)
Q Consensus 246 ~~~~~~~---~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~--~~~l~~l~~~~~ 320 (774)
+.+..+. +..+..+..+|+|+|+..+. ..+.++++|||||+|..+-++.+ .+. .+.+..++....
T Consensus 224 ~~s~~~r~~~~~~~~~g~~~IVVgTrsal~---------~p~~~l~liVvDEeh~~s~~~~~-~p~y~~r~va~~ra~~~ 293 (679)
T PRK05580 224 GLSDGERLDEWRKAKRGEAKVVIGARSALF---------LPFKNLGLIIVDEEHDSSYKQQE-GPRYHARDLAVVRAKLE 293 (679)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEeccHHhc---------ccccCCCEEEEECCCccccccCc-CCCCcHHHHHHHHhhcc
Confidence 8776443 33455678899999998652 34578999999999998766543 333 355655555443
Q ss_pred ccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCC-CCCcEEEEeecCCcc----chhhhHhHHHHHHH
Q 004098 321 ANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFF-RPNLRFSVKHSKTSS----RASYKKDFCQLIDI 395 (774)
Q Consensus 321 ~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~-r~~l~~~v~~~~~~~----~~~~~~~l~~l~~~ 395 (774)
+.|++++|||++.+....+..-- - ....+...+. ++-....+....... ...+...+...+..
T Consensus 294 ---------~~~~il~SATps~~s~~~~~~g~--~-~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~ 361 (679)
T PRK05580 294 ---------NIPVVLGSATPSLESLANAQQGR--Y-RLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQ 361 (679)
T ss_pred ---------CCCEEEEcCCCCHHHHHHHhccc--e-eEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHH
Confidence 78999999999988776553210 0 0011111111 111122222211100 00111222221111
Q ss_pred HHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCC--Ccccccccc
Q 004098 396 YTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDS--VDDWDVACG 473 (774)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~ 473 (774)
.. .. ..+.++ |+...+ -.-....|+
T Consensus 362 ~l---~~--g~qvll------------------------------------------------~~nrrGy~~~~~C~~Cg 388 (679)
T PRK05580 362 RL---ER--GEQVLL------------------------------------------------FLNRRGYAPFLLCRDCG 388 (679)
T ss_pred HH---Hc--CCeEEE------------------------------------------------EEcCCCCCCceEhhhCc
Confidence 11 00 111110 111000 001123455
Q ss_pred cccCCCCCCCCCCccchhhc---cccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhC--CCceEEecCCCC-
Q 004098 474 EFYGHSPHRDRDTDRSFERT---DLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF--GVKAAAYNASLP- 547 (774)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~---~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~--g~~~~~~h~~l~- 547 (774)
+......|............ ....... .+....+.-....|......++.+++.|.+. +.++..+|+++.
T Consensus 389 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~----~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~ 464 (679)
T PRK05580 389 WVAECPHCDASLTLHRFQRRLRCHHCGYQE----PIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTR 464 (679)
T ss_pred CccCCCCCCCceeEECCCCeEECCCCcCCC----CCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccc
Confidence 55444444432221110000 0000000 0000001111123555567888899999886 889999999986
Q ss_pred -HHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCC--CCC----------HHHHHHHhhccccCCCcceEEE
Q 004098 548 -KSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW--PQS----------LEAYYQEAGRAGRDGHLADCVL 614 (774)
Q Consensus 548 -~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~--p~s----------~~~y~Qr~GRaGR~G~~g~~il 614 (774)
++++++++++|++|+.+|||+|+++++|+|+|+|.+|+.+|. +.+ ...|+|++|||||.+..|.+++
T Consensus 465 ~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 465 RKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred cchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 467899999999999999999999999999999999966654 322 3679999999999999999998
Q ss_pred EeeCC
Q 004098 615 YANLS 619 (774)
Q Consensus 615 ~~~~~ 619 (774)
.....
T Consensus 545 qT~~p 549 (679)
T PRK05580 545 QTYHP 549 (679)
T ss_pred EeCCC
Confidence 75433
No 82
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=6.3e-30 Score=287.64 Aligned_cols=333 Identities=24% Similarity=0.255 Sum_probs=238.5
Q ss_pred HhcCCCCCCHHHHHHHHHHHc-CCCEEEEecCCCchHHHHHHhhhc-------------cCCeEEEEccchHHHHHHHHH
Q 004098 167 KHFGHSSLKNFQKEALSAWLA-HHDCLVLAATGSGKSLCFQIPALL-------------TGKVVVVISPLISLMHDQCSK 232 (774)
Q Consensus 167 ~~~g~~~~r~~Q~~ai~~il~-g~d~lv~apTGsGKTl~~~lpal~-------------~~~~~LVvsPt~~L~~qq~~~ 232 (774)
..|+|..|..+|.+++|.+.+ ..|+||+||||+|||-.|+|.+|. .+-++|+|+|+++|+.+.++.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 588999999999999999986 679999999999999999999874 256999999999999999888
Q ss_pred HHh----cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHH-HHHHhcCccEEEEeccccccc-CCCCcH
Q 004098 233 LSK----HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQ-RLAESRGIALFAIDEVHCVSK-WGHDFR 306 (774)
Q Consensus 233 l~~----~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~-~~~~~~~i~~iVIDEaH~l~~-~g~~fr 306 (774)
+.+ +|+++..++|+..-...+ + ..++|+|+|||++--.-.... ...-...|++|||||+|.+-+ .|...+
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~te--i--~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlE 259 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTE--I--ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLE 259 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHH--H--HhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHH
Confidence 876 489999999987654333 2 247999999998732111001 111235689999999999975 776666
Q ss_pred HHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCC--CceEEEccCCCCCcEEEEeecCCccchh
Q 004098 307 PDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSK--GTKFVLTSFFRPNLRFSVKHSKTSSRAS 384 (774)
Q Consensus 307 ~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~--~~~~~~~~~~r~~l~~~v~~~~~~~~~~ 384 (774)
....+...+.+.-.. .+++++||||+| ..+|+..+|+.+. ....|..+|..-++...+...+......
T Consensus 260 tiVaRtlr~vessqs--------~IRivgLSATlP--N~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~ 329 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQS--------MIRIVGLSATLP--NYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQ 329 (1230)
T ss_pred HHHHHHHHHHHhhhh--------heEEEEeeccCC--CHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchh
Confidence 666666655554332 688999999997 5678999998752 2233334444445554443322110000
Q ss_pred hhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCC
Q 004098 385 YKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDS 464 (774)
Q Consensus 385 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (774)
-. +.++
T Consensus 330 ~~----~~~d---------------------------------------------------------------------- 335 (1230)
T KOG0952|consen 330 QK----KNID---------------------------------------------------------------------- 335 (1230)
T ss_pred hh----hhHH----------------------------------------------------------------------
Confidence 00 0000
Q ss_pred CcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhC----C----
Q 004098 465 VDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF----G---- 536 (774)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~----g---- 536 (774)
.....++++.+. .+.+++|||.+|+.+...|+.|.+. |
T Consensus 336 -------------------------------~~~~~kv~e~~~---~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~ 381 (1230)
T KOG0952|consen 336 -------------------------------EVCYDKVVEFLQ---EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDL 381 (1230)
T ss_pred -------------------------------HHHHHHHHHHHH---cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccc
Confidence 001111222221 4668999999999999999998762 1
Q ss_pred ---------------CceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEE----EeCCCC------
Q 004098 537 ---------------VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRII----HYGWPQ------ 591 (774)
Q Consensus 537 ---------------~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI----~~d~p~------ 591 (774)
.....+||||..++|..+.+.|+.|.++|||||..++.|+|+|+--++| .||..+
T Consensus 382 f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dl 461 (1230)
T KOG0952|consen 382 FLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDL 461 (1230)
T ss_pred cCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeee
Confidence 2357899999999999999999999999999999999999999754444 344332
Q ss_pred CHHHHHHHhhccccCC--CcceEEEEeeCCCC
Q 004098 592 SLEAYYQEAGRAGRDG--HLADCVLYANLSSM 621 (774)
Q Consensus 592 s~~~y~Qr~GRaGR~G--~~g~~il~~~~~~~ 621 (774)
++-+-+|..|||||.. ..|.++++.+....
T Consensus 462 gilDVlQifGRAGRPqFd~~G~giIiTt~dkl 493 (1230)
T KOG0952|consen 462 GILDVLQIFGRAGRPQFDSSGEGIIITTRDKL 493 (1230)
T ss_pred hHHHHHHHHhccCCCCCCCCceEEEEecccHH
Confidence 5678899999999954 67888887654433
No 83
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=1.3e-29 Score=302.41 Aligned_cols=302 Identities=18% Similarity=0.224 Sum_probs=196.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc-c---C--CeEEEEcc----chHHHHHHHHHHHh-cCCcEEEEcCC
Q 004098 178 QKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-T---G--KVVVVISP----LISLMHDQCSKLSK-HGVTACFLGSG 246 (774)
Q Consensus 178 Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~-~---~--~~~LVvsP----t~~L~~qq~~~l~~-~gi~~~~l~~~ 246 (774)
-.+++..+..++.++|+++||||||. ++|.++ . + +.+++.-| +++|+.++.+++.. +|-.+.+-...
T Consensus 79 r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vrf 156 (1294)
T PRK11131 79 KQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRF 156 (1294)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeecC
Confidence 34566666667778888999999999 688543 1 2 34455557 57889999988875 45433221111
Q ss_pred CChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccc-ccccCCCCcHHHHHHHHHHHHHhcccccc
Q 004098 247 QPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVH-CVSKWGHDFRPDYRRLSVLRENFGANNLK 325 (774)
Q Consensus 247 ~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH-~l~~~g~~fr~~~~~l~~l~~~~~~~~~~ 325 (774)
. .......+|+|+||++|++.+. .. ..+.++++||||||| ++++.+ |...+ |..+...
T Consensus 157 ~-------~~~s~~t~I~v~TpG~LL~~l~--~d-~~Ls~~~~IIIDEAHERsLn~D--fLLg~--Lk~lL~~------- 215 (1294)
T PRK11131 157 N-------DQVSDNTMVKLMTDGILLAEIQ--QD-RLLMQYDTIIIDEAHERSLNID--FILGY--LKELLPR------- 215 (1294)
T ss_pred c-------cccCCCCCEEEEChHHHHHHHh--cC-CccccCcEEEecCccccccccc--hHHHH--HHHhhhc-------
Confidence 1 0113467999999999988765 22 236889999999999 566544 65432 2222211
Q ss_pred cccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhccccc
Q 004098 326 SLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEK 405 (774)
Q Consensus 326 ~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 405 (774)
+++.++|++|||++.+ .+.+.++ +.+.+.......| +..............-.+.+..++
T Consensus 216 --rpdlKvILmSATid~e---~fs~~F~--~apvI~V~Gr~~p-Vei~y~p~~~~~~~~~~d~l~~ll------------ 275 (1294)
T PRK11131 216 --RPDLKVIITSATIDPE---RFSRHFN--NAPIIEVSGRTYP-VEVRYRPIVEEADDTERDQLQAIF------------ 275 (1294)
T ss_pred --CCCceEEEeeCCCCHH---HHHHHcC--CCCEEEEcCcccc-ceEEEeecccccchhhHHHHHHHH------------
Confidence 1368999999999754 3444432 1222222211111 111110000000000000000000
Q ss_pred ccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCC
Q 004098 406 EKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRD 485 (774)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (774)
T Consensus 276 -------------------------------------------------------------------------------- 275 (1294)
T PRK11131 276 -------------------------------------------------------------------------------- 275 (1294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCc---eEEecCCCCHHHHHHHHHHHhcCC
Q 004098 486 TDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVK---AAAYNASLPKSQLRRVHTEFHENK 562 (774)
Q Consensus 486 ~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~---~~~~h~~l~~~~R~~~~~~F~~g~ 562 (774)
..+..+.. ...+.+||||+++.+++.+++.|.+.++. +..+||+|++++|..+++. .|.
T Consensus 276 ---------------~~V~~l~~-~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~ 337 (1294)
T PRK11131 276 ---------------DAVDELGR-EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSG 337 (1294)
T ss_pred ---------------HHHHHHhc-CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCC
Confidence 00001111 14578999999999999999999987764 6789999999999999886 578
Q ss_pred ceEEEEecccccCcccCCcceEEEeCC---------------C---CCHHHHHHHhhccccCCCcceEEEEeeCCCC
Q 004098 563 LEVVVATIAFGMGIDKLNVRRIIHYGW---------------P---QSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (774)
Q Consensus 563 ~~vLVAT~a~~~GIDip~V~~VI~~d~---------------p---~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~ 621 (774)
.+|||||+++++|||+|+|++||++|. | -|.++|.||+|||||. ++|.|+.+|+..+.
T Consensus 338 rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 338 RRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred eeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 899999999999999999999999973 3 4668999999999999 79999999976543
No 84
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=2.7e-29 Score=279.64 Aligned_cols=334 Identities=20% Similarity=0.235 Sum_probs=219.2
Q ss_pred CCCHHHHHHHHHHHc----CCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcCCc--EEEEcCC
Q 004098 173 SLKNFQKEALSAWLA----HHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVT--ACFLGSG 246 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~----g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~--~~~l~~~ 246 (774)
.+|+||.+|+.++.+ .+..++++|||+|||++++..+-.....+|||+|+++|+.||.+.+.++... .....++
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~~ 115 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIYGG 115 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCccccceecC
Confidence 699999999999998 8999999999999999988877776677999999999999999888775432 2333333
Q ss_pred CChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhccccccc
Q 004098 247 QPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326 (774)
Q Consensus 247 ~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~ 326 (774)
..... .+ ..|.|+|.+++.+... ........+++||+||||++. .+.|+.+......
T Consensus 116 ~~~~~------~~-~~i~vat~qtl~~~~~--l~~~~~~~~~liI~DE~Hh~~------a~~~~~~~~~~~~-------- 172 (442)
T COG1061 116 GEKEL------EP-AKVTVATVQTLARRQL--LDEFLGNEFGLIIFDEVHHLP------APSYRRILELLSA-------- 172 (442)
T ss_pred ceecc------CC-CcEEEEEhHHHhhhhh--hhhhcccccCEEEEEccccCC------cHHHHHHHHhhhc--------
Confidence 32211 11 3699999999976421 122223479999999999995 4555655444332
Q ss_pred ccCCCCEEEEeccCCHHH---HHHHHHHcCCCCCceEEE--------ccCCCCCcEEEEeecCCccc-hhhhHhHHHHHH
Q 004098 327 LKFDIPLMALTATATIQV---REDILKSLHMSKGTKFVL--------TSFFRPNLRFSVKHSKTSSR-ASYKKDFCQLID 394 (774)
Q Consensus 327 l~~~~~il~lTAT~~~~~---~~~i~~~L~~~~~~~~~~--------~~~~r~~l~~~v~~~~~~~~-~~~~~~l~~l~~ 394 (774)
..++|+|||||.... ..++...++ +.++. ..+..|...+.+........ ..+.+.......
T Consensus 173 ---~~~~LGLTATp~R~D~~~~~~l~~~~g----~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~ 245 (442)
T COG1061 173 ---AYPRLGLTATPEREDGGRIGDLFDLIG----PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRE 245 (442)
T ss_pred ---ccceeeeccCceeecCCchhHHHHhcC----CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhh
Confidence 233899999986432 233444443 11211 13334443444433211111 000000000000
Q ss_pred HHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCccccccccc
Q 004098 395 IYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGE 474 (774)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 474 (774)
... ... ..++.+.
T Consensus 246 ~~~-~~~-------------------------------------------------------~~~~~~~----------- 258 (442)
T COG1061 246 LLR-ARG-------------------------------------------------------TLRAENE----------- 258 (442)
T ss_pred hhh-hhh-------------------------------------------------------hhhHHHH-----------
Confidence 000 000 0000000
Q ss_pred ccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHH
Q 004098 475 FYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV 554 (774)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~ 554 (774)
..........+...+...+.......+++|||.++..++.++..|...++ +..+.+..++.+|..+
T Consensus 259 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~i 324 (442)
T COG1061 259 -------------ARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAI 324 (442)
T ss_pred -------------HHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHH
Confidence 00000111112222223332222456999999999999999999998888 8999999999999999
Q ss_pred HHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhcccc-CCCcce-EEEEee
Q 004098 555 HTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGR-DGHLAD-CVLYAN 617 (774)
Q Consensus 555 ~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR-~G~~g~-~il~~~ 617 (774)
+++|+.|++++||++.++.+|+|+|+++++|......|...|+||+||.-| ...++. .+++|.
T Consensus 325 l~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~ 389 (442)
T COG1061 325 LERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYS 389 (442)
T ss_pred HHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEE
Confidence 999999999999999999999999999999999999999999999999999 433443 344443
No 85
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=4.3e-29 Score=281.24 Aligned_cols=348 Identities=18% Similarity=0.214 Sum_probs=209.3
Q ss_pred EEEecCCCchHHHHHHhh---hccCCeEEEEccchHHHHHHHHHHHh-cCCcEEEEcCCCChHHH---HHHHHcCCceEE
Q 004098 192 LVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSK-HGVTACFLGSGQPDNKV---EQKALRGMYSII 264 (774)
Q Consensus 192 lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~L~~qq~~~l~~-~gi~~~~l~~~~~~~~~---~~~~~~~~~~Il 264 (774)
|+.+|||+|||++|+..+ +..++.+||++|+++|+.|+++.|++ ++..+..++++.+..+. +..+..+..+|+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IV 80 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVV 80 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 468999999999986443 45688999999999999999999987 68889999988776433 334556788999
Q ss_pred EEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCc-HHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHH
Q 004098 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF-RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343 (774)
Q Consensus 265 v~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~f-r~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~ 343 (774)
|+|+..+. ..+.++++|||||+|+.+-|+.++ +...+.+..++..+. +.+++++||||+.+
T Consensus 81 VGTrsalf---------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~---------~~~vil~SATPsle 142 (505)
T TIGR00595 81 IGTRSALF---------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKF---------NCPVVLGSATPSLE 142 (505)
T ss_pred ECChHHHc---------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhc---------CCCEEEEeCCCCHH
Confidence 99998552 245789999999999998777654 222355666666655 89999999999987
Q ss_pred HHHHHHHH-cCCCCCceEEEccC-CCCCcEEEEeecCCcc-chhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCc
Q 004098 344 VREDILKS-LHMSKGTKFVLTSF-FRPNLRFSVKHSKTSS-RASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDT 420 (774)
Q Consensus 344 ~~~~i~~~-L~~~~~~~~~~~~~-~r~~l~~~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (774)
....+... +.+ ......+ .++.....+....... ...+...+.+.+..... .. .+.++
T Consensus 143 s~~~~~~g~~~~----~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~---~g--~qvLv---------- 203 (505)
T TIGR00595 143 SYHNAKQKAYRL----LVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLA---AG--EQSIL---------- 203 (505)
T ss_pred HHHHHhcCCeEE----eechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHH---cC--CcEEE----------
Confidence 76654321 100 0000001 1111222222211110 01122222222211111 00 01110
Q ss_pred cCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCC--cccccccccccCCCCCCCCCCccchhhccccCc
Q 004098 421 SSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSV--DDWDVACGEFYGHSPHRDRDTDRSFERTDLLNK 498 (774)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 498 (774)
|+..-+. .-....|++......|.................
T Consensus 204 --------------------------------------flnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~ 245 (505)
T TIGR00595 204 --------------------------------------FLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHY 245 (505)
T ss_pred --------------------------------------EEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCC
Confidence 1111000 011234555555555543322211100000000
Q ss_pred hhHhhhhccCCCC--CCcEEEEeCchHHHHHHHHHHHhC--CCceEEecCCCCHHHH--HHHHHHHhcCCceEEEEeccc
Q 004098 499 PAERLSMLQEPLE--DGLTIIYVPTRKETLSIAKYLCGF--GVKAAAYNASLPKSQL--RRVHTEFHENKLEVVVATIAF 572 (774)
Q Consensus 499 ~~~ll~~L~~~~~--~~~~IIF~~sr~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R--~~~~~~F~~g~~~vLVAT~a~ 572 (774)
-.... .+-...+ ++..|.+ ..-.++.+++.|.+. +.++..+|++++...+ +.++++|++|+.+|||+|+++
T Consensus 246 Cg~~~-~~~~~Cp~C~s~~l~~--~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i 322 (505)
T TIGR00595 246 CGYQE-PIPKTCPQCGSEDLVY--KGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMI 322 (505)
T ss_pred CcCcC-CCCCCCCCCCCCeeEe--ecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCccc
Confidence 00000 0000000 0011221 122367777777775 7899999999987765 899999999999999999999
Q ss_pred ccCcccCCcceEE--EeCC----CC------CHHHHHHHhhccccCCCcceEEEEee
Q 004098 573 GMGIDKLNVRRII--HYGW----PQ------SLEAYYQEAGRAGRDGHLADCVLYAN 617 (774)
Q Consensus 573 ~~GIDip~V~~VI--~~d~----p~------s~~~y~Qr~GRaGR~G~~g~~il~~~ 617 (774)
++|+|+|+|++|+ ++|. |. ..+.|+|++|||||.++.|.+++...
T Consensus 323 ~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 323 AKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred ccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 9999999999986 4443 31 25679999999999999999987643
No 86
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=5.6e-28 Score=268.77 Aligned_cols=374 Identities=18% Similarity=0.205 Sum_probs=234.6
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhh---ccCCeEEEEccchHHHHHHHHHHHhcCCcEE
Q 004098 165 LKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKHGVTAC 241 (774)
Q Consensus 165 L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal---~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~ 241 (774)
+...|+| .+-++|++||-++.+|..++|.|+|.+|||+++-..+. .+.-++++.+|.++|-+|.++.|+..--.+.
T Consensus 290 ~a~~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg 368 (1248)
T KOG0947|consen 290 MALIYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVG 368 (1248)
T ss_pred HHhhCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccc
Confidence 3345788 59999999999999999999999999999998554433 3577999999999999999999988432344
Q ss_pred EEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc--CCCCcHHHHHHHHHHHHHh
Q 004098 242 FLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK--WGHDFRPDYRRLSVLRENF 319 (774)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~--~g~~fr~~~~~l~~l~~~~ 319 (774)
.++|+.. ++.....+|+|.|.|.+++. ++.--.+++.+||+||+|.+.+ .|+.|.+.
T Consensus 369 LlTGDvq--------inPeAsCLIMTTEILRsMLY--rgadliRDvE~VIFDEVHYiND~eRGvVWEEV----------- 427 (1248)
T KOG0947|consen 369 LLTGDVQ--------INPEASCLIMTTEILRSMLY--RGADLIRDVEFVIFDEVHYINDVERGVVWEEV----------- 427 (1248)
T ss_pred eeeccee--------eCCCcceEeehHHHHHHHHh--cccchhhccceEEEeeeeecccccccccceee-----------
Confidence 6666542 34567899999999998887 4443457799999999999975 77655544
Q ss_pred cccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCC-CC-CcEEEEeecCCccchhhhHhHHHHHHHHH
Q 004098 320 GANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFF-RP-NLRFSVKHSKTSSRASYKKDFCQLIDIYT 397 (774)
Q Consensus 320 ~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~-r~-~l~~~v~~~~~~~~~~~~~~l~~l~~~~~ 397 (774)
+-.+|+++++|+||||.+.. .++..|.|-.+.-.+++.+.. || ++...........+ .....=..+..-+.
T Consensus 428 ----iIMlP~HV~~IlLSATVPN~--~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~k-iidq~g~fl~~~~~ 500 (1248)
T KOG0947|consen 428 ----IIMLPRHVNFILLSATVPNT--LEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFK-IIDQNGIFLLKGIK 500 (1248)
T ss_pred ----eeeccccceEEEEeccCCCh--HHHHHHhhhccCceEEEEecCCCccceEEEEEeccceeh-hhcccchhhhhcch
Confidence 33457799999999998753 356777776555566665553 33 33333333211110 00000000000000
Q ss_pred hhhcccccccccCCCcCCCccCccCCCcccccccCCC-CCCCCCCCCc-cCCCCCCccchhhhhhhcCCCcccccccccc
Q 004098 398 KKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISP-NIGDGYYDDE-DVGNSPMGKEMSVEFLENDSVDDWDVACGEF 475 (774)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 475 (774)
.......+........ .+.... ...+. ...+..+... ..++.
T Consensus 501 ~a~~~~~~~ak~~~~~----~~~~~~------~rgs~~~ggk~~~~~g~~r~~~-------------------------- 544 (1248)
T KOG0947|consen 501 DAKDSLKKEAKFVDVE----KSDARG------GRGSQKRGGKTNYHNGGSRGSG-------------------------- 544 (1248)
T ss_pred hhhhhhcccccccccc----cccccc------cccccccCCcCCCCCCCccccc--------------------------
Confidence 0000000000000000 000000 00000 0000000000 00000
Q ss_pred cCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCC-------------------
Q 004098 476 YGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG------------------- 536 (774)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g------------------- 536 (774)
+.. ... . ......++..|... .--|+||||-+++.|++-+++|....
T Consensus 545 ----~~~------nrr--~-~~~~l~lin~L~k~-~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~ 610 (1248)
T KOG0947|consen 545 ----IGK------NRR--K-QPTWLDLINHLRKK-NLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVA 610 (1248)
T ss_pred ----ccc------ccc--c-cchHHHHHHHHhhc-ccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 000 000 0 01223334444332 33489999999999999999987511
Q ss_pred --------------------CceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCC------
Q 004098 537 --------------------VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWP------ 590 (774)
Q Consensus 537 --------------------~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p------ 590 (774)
-.++.+|||+-+--++-+.-.|..|-++||+||..|+||||.|. +.||.-.+.
T Consensus 611 rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPA-RtvVF~Sl~KhDG~e 689 (1248)
T KOG0947|consen 611 RLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPA-RTVVFSSLRKHDGNE 689 (1248)
T ss_pred hcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCc-eeEEeeehhhccCcc
Confidence 13688999999999999999999999999999999999999996 666655443
Q ss_pred ---CCHHHHHHHhhccccCC--CcceEEEEeeC
Q 004098 591 ---QSLEAYYQEAGRAGRDG--HLADCVLYANL 618 (774)
Q Consensus 591 ---~s~~~y~Qr~GRaGR~G--~~g~~il~~~~ 618 (774)
-.+-+|+|++|||||.| ..|+++++...
T Consensus 690 fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 690 FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred eeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 25789999999999999 46777777643
No 87
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.3e-26 Score=266.15 Aligned_cols=420 Identities=15% Similarity=0.172 Sum_probs=261.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHhc-
Q 004098 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKH- 236 (774)
Q Consensus 161 l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~~- 236 (774)
+.++-++.+|. .+++.|.-+--.+.+|+ |+.|+||+|||++|.+|++. .+..++||+||+.|+.|.++.+..+
T Consensus 71 vrEa~~R~lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 71 VREVSLRTLGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred HHHHHHHHcCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 44555667787 57888877766666665 99999999999999999984 4678999999999999999988873
Q ss_pred ---CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHH-HHHHHHHHH----HHHhcCccEEEEecccccc---------
Q 004098 237 ---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV-IRLIKPLQR----LAESRGIALFAIDEVHCVS--------- 299 (774)
Q Consensus 237 ---gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l-~~ll~~~~~----~~~~~~i~~iVIDEaH~l~--------- 299 (774)
|+.+.++.++.+....... . .++|+|+||++| .+++..-.. ..-...+.++||||||.|+
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~-y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLI 224 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEA-Y--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLI 224 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHH-h--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCcee
Confidence 8999999888776543222 2 579999999998 666652100 0113689999999999874
Q ss_pred --cCCCCcHHHHHHHHHHHHHhcccc------cccccCCCCEEEEeccCCHHHHHHHHHHcCCCCC-ceEEE--------
Q 004098 300 --KWGHDFRPDYRRLSVLRENFGANN------LKSLKFDIPLMALTATATIQVREDILKSLHMSKG-TKFVL-------- 362 (774)
Q Consensus 300 --~~g~~fr~~~~~l~~l~~~~~~~~------~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~-~~~~~-------- 362 (774)
.........|..+..+...+.... --.+......+.||-.-.... +.++...++... ...+.
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~-e~~~~~~~il~~~~~l~~~~~~~~~~ 303 (896)
T PRK13104 225 ISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHI-EELLTKAKLLDPGESLYHASNIMLMH 303 (896)
T ss_pred eeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHH-HHHHHhCCccCCcccccCchhhhHHH
Confidence 222233456766666665554210 000111234455554322222 122211122100 00000
Q ss_pred --------ccCCCCCcEEEEeecCC----------ccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCC
Q 004098 363 --------TSFFRPNLRFSVKHSKT----------SSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSS 424 (774)
Q Consensus 363 --------~~~~r~~l~~~v~~~~~----------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (774)
..++..+..|.|...+- -....|.+-+++.++.-..-.
T Consensus 304 ~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~------------------------ 359 (896)
T PRK13104 304 HVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVP------------------------ 359 (896)
T ss_pred HHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCC------------------------
Confidence 01233333444432110 011234444555544221100
Q ss_pred cccccccC-CCCCCCCCCC--CccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhH
Q 004098 425 SMSEESRI-SPNIGDGYYD--DEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAE 501 (774)
Q Consensus 425 ~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 501 (774)
...+... +.--.+.+|. ....|++.+.+....+|..-.. ..+..+..+.|....+... ........|...
T Consensus 360 -i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~-----l~Vv~IPtnkp~~R~d~~d-~v~~t~~~k~~a 432 (896)
T PRK13104 360 -IQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYN-----LEVVVIPTNRSMIRKDEAD-LVYLTQADKFQA 432 (896)
T ss_pred -CCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhC-----CCEEECCCCCCcceecCCC-eEEcCHHHHHHH
Confidence 0000000 0001111221 1345666666665566654322 1222222233322111111 112223346666
Q ss_pred hhhhccCCC-CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCC
Q 004098 502 RLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLN 580 (774)
Q Consensus 502 ll~~L~~~~-~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~ 580 (774)
+++.+.+.. .+.|+||||+|+..++.+++.|.+.|+++..+||.+.+.++..+.+.|+.| .|+|||+++|||+||.=
T Consensus 433 v~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~L 510 (896)
T PRK13104 433 IIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVL 510 (896)
T ss_pred HHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceec
Confidence 666665443 456999999999999999999999999999999999999999999999999 49999999999999851
Q ss_pred ---------------------------------c-----ceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 581 ---------------------------------V-----RRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 581 ---------------------------------V-----~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
| -+||-...+.|..---|-.|||||.|.||.+.+|++..|
T Consensus 511 ggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 511 GGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred CCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 1 279999999999999999999999999999999998765
No 88
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=2.6e-27 Score=283.95 Aligned_cols=305 Identities=15% Similarity=0.167 Sum_probs=193.7
Q ss_pred HHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc------CCeEEEEccchHHHHHHHHHHHh-cCCcEEEEcCCCChHH
Q 004098 179 KEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLISLMHDQCSKLSK-HGVTACFLGSGQPDNK 251 (774)
Q Consensus 179 ~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~------~~~~LVvsPt~~L~~qq~~~l~~-~gi~~~~l~~~~~~~~ 251 (774)
.+.+..+..++.+||+++||||||. ++|.++. .+.+++.-|.|--+......+.+ +|.......|.....
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~- 149 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRF- 149 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcC-
Confidence 3455555566778889999999998 5676531 34666677877666666655544 455443333321110
Q ss_pred HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccc-ccccCCCCcHHHHHHHHHHHHHhcccccccccCC
Q 004098 252 VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVH-CVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330 (774)
Q Consensus 252 ~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH-~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~ 330 (774)
........+|.|+|+++|++.+.. ...+.++++||||||| +.++.+ |.-.+ +..+... +++
T Consensus 150 --~~~~s~~T~I~~~TdGiLLr~l~~---d~~L~~~~~IIIDEaHERsL~~D--~LL~l--Lk~il~~---------rpd 211 (1283)
T TIGR01967 150 --HDQVSSNTLVKLMTDGILLAETQQ---DRFLSRYDTIIIDEAHERSLNID--FLLGY--LKQLLPR---------RPD 211 (1283)
T ss_pred --CcccCCCceeeeccccHHHHHhhh---CcccccCcEEEEcCcchhhccch--hHHHH--HHHHHhh---------CCC
Confidence 001234579999999999876642 1236789999999999 466533 54432 2222222 127
Q ss_pred CCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCC-CCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhccccccccc
Q 004098 331 IPLMALTATATIQVREDILKSLHMSKGTKFVLTSFF-RPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSA 409 (774)
Q Consensus 331 ~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~-r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 409 (774)
.++|++|||+..+ .+.+.++- .+.+...... .-.+.|......... +.
T Consensus 212 LKlIlmSATld~~---~fa~~F~~--apvI~V~Gr~~PVev~Y~~~~~~~~~-----~~--------------------- 260 (1283)
T TIGR01967 212 LKIIITSATIDPE---RFSRHFNN--APIIEVSGRTYPVEVRYRPLVEEQED-----DD--------------------- 260 (1283)
T ss_pred CeEEEEeCCcCHH---HHHHHhcC--CCEEEECCCcccceeEEecccccccc-----hh---------------------
Confidence 7899999999753 34444431 2222222111 111111100000000 00
Q ss_pred CCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccc
Q 004098 410 IPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRS 489 (774)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (774)
.+++
T Consensus 261 -----------------------------------------------~~~~----------------------------- 264 (1283)
T TIGR01967 261 -----------------------------------------------LDQL----------------------------- 264 (1283)
T ss_pred -----------------------------------------------hhHH-----------------------------
Confidence 0000
Q ss_pred hhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCC---CceEEecCCCCHHHHHHHHHHHhcCCceEE
Q 004098 490 FERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG---VKAAAYNASLPKSQLRRVHTEFHENKLEVV 566 (774)
Q Consensus 490 ~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~F~~g~~~vL 566 (774)
......+..+... ..+.+|||++++.+++.+++.|.+.+ +.+..+||+|++++|.++++.+ +..+||
T Consensus 265 -------~~i~~~I~~l~~~-~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIV 334 (1283)
T TIGR01967 265 -------EAILDAVDELFAE-GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIV 334 (1283)
T ss_pred -------HHHHHHHHHHHhh-CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEE
Confidence 0000001111111 35789999999999999999999764 4588999999999999986654 246999
Q ss_pred EEecccccCcccCCcceEEEeCCCC------------------CHHHHHHHhhccccCCCcceEEEEeeCCCCC
Q 004098 567 VATIAFGMGIDKLNVRRIIHYGWPQ------------------SLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622 (774)
Q Consensus 567 VAT~a~~~GIDip~V~~VI~~d~p~------------------s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~ 622 (774)
|||+++++|||+|+|++||++|+++ |..+|.||+|||||.| +|.|+.+|+..+..
T Consensus 335 LATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 335 LATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred EeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 9999999999999999999999543 6789999999999998 99999999765543
No 89
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.9e-26 Score=263.83 Aligned_cols=418 Identities=17% Similarity=0.155 Sum_probs=260.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHh-
Q 004098 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK- 235 (774)
Q Consensus 160 ~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~- 235 (774)
-+.++.++.+|+ .|++.|.-+.-.+.+|+ |+.|.||.|||+++.+|++. .+..+-|++|+--|+.+-++.+..
T Consensus 68 ~vrEa~~R~~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~ 144 (796)
T PRK12906 68 VAREGAKRVLGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGEL 144 (796)
T ss_pred HHHHHHHHHhCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHH
Confidence 355666778888 58999988877777777 99999999999999999874 688999999999999998888876
Q ss_pred ---cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHH-HHHHH-H---HHHHHhcCccEEEEecccccc--------
Q 004098 236 ---HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI-RLIKP-L---QRLAESRGIALFAIDEVHCVS-------- 299 (774)
Q Consensus 236 ---~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~-~ll~~-~---~~~~~~~~i~~iVIDEaH~l~-------- 299 (774)
+|+++.++.++.+.... +... .++|+|+|...+. ++|.. + ........+.+.||||||.++
T Consensus 145 ~~~LGl~vg~i~~~~~~~~r-~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPL 221 (796)
T PRK12906 145 YRWLGLTVGLNLNSMSPDEK-RAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPL 221 (796)
T ss_pred HHhcCCeEEEeCCCCCHHHH-HHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCce
Confidence 49999999887665432 2222 4699999998774 22321 0 122234678999999999873
Q ss_pred ---cCCCCcHHHHHHHHHHHHHhcccc-----------cccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceE-----
Q 004098 300 ---KWGHDFRPDYRRLSVLRENFGANN-----------LKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKF----- 360 (774)
Q Consensus 300 ---~~g~~fr~~~~~l~~l~~~~~~~~-----------~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~----- 360 (774)
.........|..+..+...+.... --.+....+.+.|| ..-.+.+...+++.+.-..
T Consensus 222 iisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lt----e~G~~~~e~~~~i~~l~~~~~~~~ 297 (796)
T PRK12906 222 IISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLT----EQGIRKAEKLFGLDNLYDSENTAL 297 (796)
T ss_pred ecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeec----HHHHHHHHHHcCCccccCchhhhH
Confidence 122234456666666655543210 00001122233343 2333344444443210000
Q ss_pred --------EEccCCCCCcEEEEeecC----------CccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccC
Q 004098 361 --------VLTSFFRPNLRFSVKHSK----------TSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSS 422 (774)
Q Consensus 361 --------~~~~~~r~~l~~~v~~~~----------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (774)
....++..+..|.|...+ .-....|..-+++.++.-..-.
T Consensus 298 ~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~---------------------- 355 (796)
T PRK12906 298 AHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVK---------------------- 355 (796)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCC----------------------
Confidence 000112233344443211 0111245555666555321100
Q ss_pred CCcccccccC-CCCCCCCCCCC--ccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCch
Q 004098 423 SSSMSEESRI-SPNIGDGYYDD--EDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKP 499 (774)
Q Consensus 423 ~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 499 (774)
..++... +.-..+.+|.. ...|.+.+......+|..-.++ ....+..+.|....+.. .........|.
T Consensus 356 ---i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l-----~vv~IPtnkp~~r~d~~-d~i~~t~~~K~ 426 (796)
T PRK12906 356 ---IQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNM-----EVITIPTNRPVIRKDSP-DLLYPTLDSKF 426 (796)
T ss_pred ---cCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCC-----CEEEcCCCCCeeeeeCC-CeEEcCHHHHH
Confidence 0000000 00000111111 3445555544444444332211 11112222222111111 11111223466
Q ss_pred hHhhhhccCC-CCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCccc
Q 004098 500 AERLSMLQEP-LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDK 578 (774)
Q Consensus 500 ~~ll~~L~~~-~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDi 578 (774)
..+.+.+... ..+.|+||||+|+..++.++..|.+.|+++..+||++.+.++..+.+.++.|. |+|||+++|||+||
T Consensus 427 ~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI 504 (796)
T PRK12906 427 NAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDI 504 (796)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCC
Confidence 6666666443 35669999999999999999999999999999999999888888888888886 99999999999999
Q ss_pred C---Ccc-----eEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 579 L---NVR-----RIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 579 p---~V~-----~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
+ +|. +||+++.|.|...|.|++|||||.|.+|.+.+|++..|
T Consensus 505 ~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 505 KLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred CCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 4 899 99999999999999999999999999999999998765
No 90
>PRK09694 helicase Cas3; Provisional
Probab=99.95 E-value=9.4e-26 Score=264.83 Aligned_cols=331 Identities=15% Similarity=0.112 Sum_probs=199.1
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---c--CCeEEEEccchHHHHHHHHHHHh-----cC-
Q 004098 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---T--GKVVVVISPLISLMHDQCSKLSK-----HG- 237 (774)
Q Consensus 169 ~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~--~~~~LVvsPt~~L~~qq~~~l~~-----~g- 237 (774)
|+...|||+|..+........-+|+.+|||+|||.++++.+.. . ...++|..||++++++.++++.+ ++
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 4445899999988654444567899999999999998776642 2 36899999999999999999875 22
Q ss_pred CcEEEEcCCCChHH--------------------HHHHHHc---C---CceEEEEChHHHHH-HHHHHHHHHHhc--Ccc
Q 004098 238 VTACFLGSGQPDNK--------------------VEQKALR---G---MYSIIYVCPETVIR-LIKPLQRLAESR--GIA 288 (774)
Q Consensus 238 i~~~~l~~~~~~~~--------------------~~~~~~~---~---~~~Ilv~TPe~l~~-ll~~~~~~~~~~--~i~ 288 (774)
..+..++|...... ....++. + -.+|+|+|+..++. .+..-+..+..- .-+
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~s 441 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRS 441 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccC
Confidence 33445554322100 0012222 1 15899999988763 222111111111 136
Q ss_pred EEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCC
Q 004098 289 LFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP 368 (774)
Q Consensus 289 ~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~ 368 (774)
+|||||+|.+-.+ ....+..+......+ ..++|+||||++...++.+...++..... . ....-|
T Consensus 442 vvIiDEVHAyD~y---m~~lL~~~L~~l~~~----------g~~vIllSATLP~~~r~~L~~a~~~~~~~--~-~~~~YP 505 (878)
T PRK09694 442 VLIVDEVHAYDAY---MYGLLEAVLKAQAQA----------GGSVILLSATLPATLKQKLLDTYGGHDPV--E-LSSAYP 505 (878)
T ss_pred eEEEechhhCCHH---HHHHHHHHHHHHHhc----------CCcEEEEeCCCCHHHHHHHHHHhcccccc--c-cccccc
Confidence 8999999987421 112222222221111 67899999999999998888776432110 0 000001
Q ss_pred CcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCC
Q 004098 369 NLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGN 448 (774)
Q Consensus 369 ~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (774)
-+...-........ + ............+
T Consensus 506 lvt~~~~~~~~~~~---------~----~~~~~~~~~~~~v--------------------------------------- 533 (878)
T PRK09694 506 LITWRGVNGAQRFD---------L----SAHPEQLPARFTI--------------------------------------- 533 (878)
T ss_pred cccccccccceeee---------c----cccccccCcceEE---------------------------------------
Confidence 10000000000000 0 0000000000000
Q ss_pred CCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCC-CCCCcEEEEeCchHHHHH
Q 004098 449 SPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-LEDGLTIIYVPTRKETLS 527 (774)
Q Consensus 449 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~-~~~~~~IIF~~sr~~~~~ 527 (774)
..+.+ ..........+++.+.+. ..++++||||||++.+.+
T Consensus 534 -------~v~~~-------------------------------~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ 575 (878)
T PRK09694 534 -------QLEPI-------------------------------CLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQK 575 (878)
T ss_pred -------EEEee-------------------------------ccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence 00000 000000001122222221 245689999999999999
Q ss_pred HHHHHHhCC---CceEEecCCCCHHHH----HHHHHHH-hcCC---ceEEEEecccccCcccCCcceEEEeCCCCCHHHH
Q 004098 528 IAKYLCGFG---VKAAAYNASLPKSQL----RRVHTEF-HENK---LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAY 596 (774)
Q Consensus 528 l~~~L~~~g---~~~~~~h~~l~~~~R----~~~~~~F-~~g~---~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y 596 (774)
+++.|++.+ ..+..+||.++..+| +++++.| ++|+ ..|||||+++++|||+ +++++|....| ++.|
T Consensus 576 ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsL 652 (878)
T PRK09694 576 LYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLL 652 (878)
T ss_pred HHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHH
Confidence 999999765 689999999999999 4567788 6665 4799999999999999 68999998888 7899
Q ss_pred HHHhhccccCCC
Q 004098 597 YQEAGRAGRDGH 608 (774)
Q Consensus 597 ~Qr~GRaGR~G~ 608 (774)
+||+||+||.+.
T Consensus 653 iQRaGR~~R~~~ 664 (878)
T PRK09694 653 FQRLGRLHRHHR 664 (878)
T ss_pred HHHHhccCCCCC
Confidence 999999999886
No 91
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.95 E-value=1.1e-27 Score=273.27 Aligned_cols=397 Identities=16% Similarity=0.183 Sum_probs=270.6
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEecCCCchHH---HHHH---hhhccCCeEEEEccchHHHHHHHHHHHhc-CCcE
Q 004098 172 SSLKNFQKEALSAWL----AHHDCLVLAATGSGKSL---CFQI---PALLTGKVVVVISPLISLMHDQCSKLSKH-GVTA 240 (774)
Q Consensus 172 ~~~r~~Q~~ai~~il----~g~d~lv~apTGsGKTl---~~~l---pal~~~~~~LVvsPt~~L~~qq~~~l~~~-gi~~ 240 (774)
..+|.||.+.+++++ .+.++|++..+|.|||+ +|+- -.+...|..|||+|+ +-+..|.+++..+ .+++
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvpl-st~~~W~~ef~~w~~mn~ 447 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPL-STITAWEREFETWTDMNV 447 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeeh-hhhHHHHHHHHHHhhhce
Confidence 689999999999977 58899999999999996 3433 333356889999997 6778888888886 6778
Q ss_pred EEEcCCCChHHHHHHH--H-cC-----CceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHH
Q 004098 241 CFLGSGQPDNKVEQKA--L-RG-----MYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312 (774)
Q Consensus 241 ~~l~~~~~~~~~~~~~--~-~~-----~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l 312 (774)
++++|.....+..+.. . .. .++++++|.|.++.... .+..-.|.+++|||||++.... ...|..|
T Consensus 448 i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~----~L~~i~w~~~~vDeahrLkN~~---~~l~~~l 520 (1373)
T KOG0384|consen 448 IVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA----ELSKIPWRYLLVDEAHRLKNDE---SKLYESL 520 (1373)
T ss_pred eeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh----hhccCCcceeeecHHhhcCchH---HHHHHHH
Confidence 8888877665433221 1 22 48999999999875433 3344568999999999997422 2233333
Q ss_pred HHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHH
Q 004098 313 SVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQL 392 (774)
Q Consensus 313 ~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l 392 (774)
. .|. --..|++|+||.++..++++..|++..+..+-.. +.+.... ..........++++
T Consensus 521 ~----~f~---------~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~----~~f~~~~----~~~~e~~~~~L~~~ 579 (1373)
T KOG0384|consen 521 N----QFK---------MNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSW----DEFLEEF----DEETEEQVRKLQQI 579 (1373)
T ss_pred H----Hhc---------ccceeeecCCCccccHHHHHHHhcccCCCCCCcH----HHHHHhh----cchhHHHHHHHHHH
Confidence 2 232 3457999999999999999999987643322111 1111100 11122445667777
Q ss_pred HHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCc--------cCCCCCCccchhhhhhhcCC
Q 004098 393 IDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDE--------DVGNSPMGKEMSVEFLENDS 464 (774)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~ 464 (774)
+..+..++...+....+.++...-. .....++++.||... .-|..... ..+|. .
T Consensus 580 L~P~~lRr~kkdvekslp~k~E~Il------------rVels~lQk~yYk~ILtkN~~~LtKG~~g~~----~~lLN--i 641 (1373)
T KOG0384|consen 580 LKPFLLRRLKKDVEKSLPPKEETIL------------RVELSDLQKQYYKAILTKNFSALTKGAKGST----PSLLN--I 641 (1373)
T ss_pred hhHHHHHHHHhhhccCCCCCcceEE------------EeehhHHHHHHHHHHHHhhHHHHhccCCCCC----chHHH--H
Confidence 7776665544444443332221111 111223333333221 11111111 11221 2
Q ss_pred CcccccccccccCCCCCCCCCCc--------cchhhccccCchhHhhhhccCCC--CCCcEEEEeCchHHHHHHHHHHHh
Q 004098 465 VDDWDVACGEFYGHSPHRDRDTD--------RSFERTDLLNKPAERLSMLQEPL--EDGLTIIYVPTRKETLSIAKYLCG 534 (774)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~k~~~ll~~L~~~~--~~~~~IIF~~sr~~~~~l~~~L~~ 534 (774)
+.....+|++.+...+.+...-. ..+..+-.+..+..||+.|+..+ .+++||||.+.++..+.|++||..
T Consensus 642 mmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~ 721 (1373)
T KOG0384|consen 642 MMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSL 721 (1373)
T ss_pred HHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHH
Confidence 24567789888887765422111 12223333334444444444333 345999999999999999999999
Q ss_pred CCCceEEecCCCCHHHHHHHHHHHh---cCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcce
Q 004098 535 FGVKAAAYNASLPKSQLRRVHTEFH---ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD 611 (774)
Q Consensus 535 ~g~~~~~~h~~l~~~~R~~~~~~F~---~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~ 611 (774)
+++....+.|.+..+-|++.+..|. +..+.+|+||.|+|.|||+...+.||.||..||+++-+|...||+|.||...
T Consensus 722 r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~ 801 (1373)
T KOG0384|consen 722 RGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKH 801 (1373)
T ss_pred cCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccce
Confidence 9999999999999999999999998 5689999999999999999999999999999999999999999999999998
Q ss_pred EEEE
Q 004098 612 CVLY 615 (774)
Q Consensus 612 ~il~ 615 (774)
+-+|
T Consensus 802 VnVY 805 (1373)
T KOG0384|consen 802 VNVY 805 (1373)
T ss_pred EEEE
Confidence 8776
No 92
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=7.1e-26 Score=249.70 Aligned_cols=320 Identities=18% Similarity=0.196 Sum_probs=231.4
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEecCCCchHHHHHHhhh---ccCCeEEEEccchH
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAH------HDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLIS 224 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g------~d~lv~apTGsGKTl~~~lpal---~~~~~~LVvsPt~~ 224 (774)
..++...+.+.+...+.| ++|..|+.++..|... .+-++++.-|||||+++++.++ ..+..+...+||--
T Consensus 244 ~~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEI 322 (677)
T COG1200 244 PLPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEI 322 (677)
T ss_pred CCCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHH
Confidence 345555555666567888 6999999999999852 4679999999999999887766 46889999999999
Q ss_pred HHHHHHHHHHhc----CCcEEEEcCCCChH---HHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccc
Q 004098 225 LMHDQCSKLSKH----GVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHC 297 (774)
Q Consensus 225 L~~qq~~~l~~~----gi~~~~l~~~~~~~---~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~ 297 (774)
|+.|.++.+.++ |+++..++|..... .....+.+|..+|+|+|---+ +....++++.++||||=|+
T Consensus 323 LA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-------Qd~V~F~~LgLVIiDEQHR 395 (677)
T COG1200 323 LAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-------QDKVEFHNLGLVIIDEQHR 395 (677)
T ss_pred HHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-------hcceeecceeEEEEecccc
Confidence 999999998874 89999999877653 344556788899999996633 4445678899999999999
Q ss_pred cccCCCCcHHHHHHHHHHHHHhcccccccccC-CCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEee
Q 004098 298 VSKWGHDFRPDYRRLSVLRENFGANNLKSLKF-DIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKH 376 (774)
Q Consensus 298 l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~-~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~ 376 (774)
.. -.-|..++.- .. .+.+|.|||||-|.... +...+--+-..+-.-...|.++.-.+..
T Consensus 396 FG---V~QR~~L~~K---------------G~~~Ph~LvMTATPIPRTLA--lt~fgDldvS~IdElP~GRkpI~T~~i~ 455 (677)
T COG1200 396 FG---VHQRLALREK---------------GEQNPHVLVMTATPIPRTLA--LTAFGDLDVSIIDELPPGRKPITTVVIP 455 (677)
T ss_pred cc---HHHHHHHHHh---------------CCCCCcEEEEeCCCchHHHH--HHHhccccchhhccCCCCCCceEEEEec
Confidence 73 1112222221 11 35799999999887765 2233322111122223344454444333
Q ss_pred cCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchh
Q 004098 377 SKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMS 456 (774)
Q Consensus 377 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (774)
.. ...++++.+...
T Consensus 456 ~~---------~~~~v~e~i~~e--------------------------------------------------------- 469 (677)
T COG1200 456 HE---------RRPEVYERIREE--------------------------------------------------------- 469 (677)
T ss_pred cc---------cHHHHHHHHHHH---------------------------------------------------------
Confidence 21 111121111100
Q ss_pred hhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchH--------HHHHH
Q 004098 457 VEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRK--------ETLSI 528 (774)
Q Consensus 457 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~--------~~~~l 528 (774)
...+.++.|.|+-.+ .++++
T Consensus 470 ----------------------------------------------------i~~GrQaY~VcPLIeESE~l~l~~a~~~ 497 (677)
T COG1200 470 ----------------------------------------------------IAKGRQAYVVCPLIEESEKLELQAAEEL 497 (677)
T ss_pred ----------------------------------------------------HHcCCEEEEEeccccccccchhhhHHHH
Confidence 013446666665543 45677
Q ss_pred HHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCC-CHHHHHHHhhcccc
Q 004098 529 AKYLCGF--GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ-SLEAYYQEAGRAGR 605 (774)
Q Consensus 529 ~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~-s~~~y~Qr~GRaGR 605 (774)
++.|+.. ++++..+||.|+.+++++++++|++|+++|||||.+.+.|||+||..+.|.++.-. -+...-|-.||.||
T Consensus 498 ~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGR 577 (677)
T COG1200 498 YEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGR 577 (677)
T ss_pred HHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCC
Confidence 7777743 67799999999999999999999999999999999999999999999999888643 57889999999999
Q ss_pred CCCcceEEEEeeCC
Q 004098 606 DGHLADCVLYANLS 619 (774)
Q Consensus 606 ~G~~g~~il~~~~~ 619 (774)
.+..+.|++++.+.
T Consensus 578 G~~qSyC~Ll~~~~ 591 (677)
T COG1200 578 GDLQSYCVLLYKPP 591 (677)
T ss_pred CCcceEEEEEeCCC
Confidence 99999999999744
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.8e-25 Score=256.69 Aligned_cols=417 Identities=18% Similarity=0.161 Sum_probs=262.7
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHhc-
Q 004098 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKH- 236 (774)
Q Consensus 161 l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~~- 236 (774)
+.++.++.+|+ .|++.|.-+.-.+.+|+ |+.|+||+|||++|.+|++. .+..+-||+||..|+.|.++.+..+
T Consensus 70 vrEa~~R~lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 70 VREASKRVLGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred HHHHHHHHhCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHH
Confidence 45556677888 58999988877777775 99999999999999999963 4666889999999999999888773
Q ss_pred ---CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHH-HHHHHHHH----HHHHhcCccEEEEecccccc---------
Q 004098 237 ---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV-IRLIKPLQ----RLAESRGIALFAIDEVHCVS--------- 299 (774)
Q Consensus 237 ---gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l-~~ll~~~~----~~~~~~~i~~iVIDEaH~l~--------- 299 (774)
|+++..+.++.+....... . .++|+|+||.+| .+++.... ....+..+.++||||||.|+
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~-y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLi 223 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREA-Y--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLI 223 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHh-c--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCcee
Confidence 8999999988776543322 2 379999999999 66665211 11345789999999999874
Q ss_pred --cCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCce-------------EEEcc
Q 004098 300 --KWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTK-------------FVLTS 364 (774)
Q Consensus 300 --~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~-------------~~~~~ 364 (774)
.....-...|..+..+...+....--.+-.....+.||. .-...+...+++..-.. +....
T Consensus 224 iSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte----~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~ 299 (830)
T PRK12904 224 ISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTE----EGIEKAEKLLGIENLYDPENIALVHHLNQALRAHE 299 (830)
T ss_pred eECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECH----HHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHH
Confidence 122223456666666666553211011112233445553 23333333343311000 00001
Q ss_pred CCCCCcEEEEeecC----------CccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCccccccc-CC
Q 004098 365 FFRPNLRFSVKHSK----------TSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESR-IS 433 (774)
Q Consensus 365 ~~r~~l~~~v~~~~----------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 433 (774)
++..+..|.|...+ .-....|.+-+++.++.-..-. ..++.. .+
T Consensus 300 l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~-------------------------i~~e~~t~a 354 (830)
T PRK12904 300 LFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVK-------------------------IQNENQTLA 354 (830)
T ss_pred HHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCC-------------------------CCCCceeee
Confidence 12233333332210 0011244555555554221100 000000 00
Q ss_pred CCCCCCCCCC--ccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCC-C
Q 004098 434 PNIGDGYYDD--EDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-L 510 (774)
Q Consensus 434 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~-~ 510 (774)
.--.+.+|.. ...|++.+......+|..-.++ .+..+..+.|....+.. .........|...+...+.+. .
T Consensus 355 ~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l-----~vv~IPtnkp~~r~d~~-d~i~~t~~~K~~aI~~~I~~~~~ 428 (830)
T PRK12904 355 SITFQNYFRMYEKLAGMTGTADTEAEEFREIYNL-----DVVVIPTNRPMIRIDHP-DLIYKTEKEKFDAVVEDIKERHK 428 (830)
T ss_pred eeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCC-----CEEEcCCCCCeeeeeCC-CeEEECHHHHHHHHHHHHHHHHh
Confidence 0001111111 3445555555444454432221 12222222222211111 111223335666777777552 3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCc---------
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNV--------- 581 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V--------- 581 (774)
.+.|+||||+|+..++.+++.|.+.|+++..+||. +.+|+..+.+|..+...|+|||+++|||+||+--
T Consensus 429 ~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~ 506 (830)
T PRK12904 429 KGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAA 506 (830)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhh
Confidence 45699999999999999999999999999999995 8899999999999999999999999999999642
Q ss_pred -----------------------------ceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 582 -----------------------------RRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 582 -----------------------------~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
-+||....|.|..---|-.|||||.|.||.+.+|++..|
T Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 507 LLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred hhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 379999999999999999999999999999999998765
No 94
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=6.6e-26 Score=263.05 Aligned_cols=358 Identities=22% Similarity=0.235 Sum_probs=229.5
Q ss_pred HhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHH---hhhccCCeEEEEccchHHHHHHHHHHHh-cCC--c-
Q 004098 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQI---PALLTGKVVVVISPLISLMHDQCSKLSK-HGV--T- 239 (774)
Q Consensus 167 ~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~l---pal~~~~~~LVvsPt~~L~~qq~~~l~~-~gi--~- 239 (774)
..++| .+-++|++++..+.+|..++|+||||+|||++.-. -++..+.++++.+|.++|.+|.++.|.. +|- .
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~ 192 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADM 192 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhh
Confidence 46788 59999999999999999999999999999997433 2345678899999999999999999877 442 2
Q ss_pred EEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc--CCCCcHHHHHHHHHHHH
Q 004098 240 ACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK--WGHDFRPDYRRLSVLRE 317 (774)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~--~g~~fr~~~~~l~~l~~ 317 (774)
+..++|+.. .++...++|+|.|.|.+++. .+......+.+||+||+|+|.+ .|-.+...+
T Consensus 193 vGL~TGDv~--------IN~~A~clvMTTEILRnMly--rg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~I-------- 254 (1041)
T COG4581 193 VGLMTGDVS--------INPDAPCLVMTTEILRNMLY--RGSESLRDIEWVVFDEVHYIGDRERGVVWEEVI-------- 254 (1041)
T ss_pred ccceeccee--------eCCCCceEEeeHHHHHHHhc--cCcccccccceEEEEeeeeccccccchhHHHHH--------
Confidence 244444432 35678999999999998887 5556678899999999999986 443333322
Q ss_pred HhcccccccccCCCCEEEEeccCCHHHH-HHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHH
Q 004098 318 NFGANNLKSLKFDIPLMALTATATIQVR-EDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIY 396 (774)
Q Consensus 318 ~~~~~~~~~l~~~~~il~lTAT~~~~~~-~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~ 396 (774)
..+|.++++++||||.+.... ...+...+ ..+..++.+.+...++...+...+.-. .+++.-
T Consensus 255 -------i~lP~~v~~v~LSATv~N~~EF~~Wi~~~~-~~~~~vv~t~~RpvPL~~~~~~~~~l~---------~lvde~ 317 (1041)
T COG4581 255 -------ILLPDHVRFVFLSATVPNAEEFAEWIQRVH-SQPIHVVSTEHRPVPLEHFVYVGKGLF---------DLVDEK 317 (1041)
T ss_pred -------HhcCCCCcEEEEeCCCCCHHHHHHHHHhcc-CCCeEEEeecCCCCCeEEEEecCCcee---------eeeccc
Confidence 234568999999999865432 23333333 335566666666667766665432111 111100
Q ss_pred HhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhh---hhcCCCcccccccc
Q 004098 397 TKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEF---LENDSVDDWDVACG 473 (774)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~ 473 (774)
.. ...... + .....+...+ ...+.-..+..
T Consensus 318 ~~------~~~~~~-----------------------~---------------~a~~~l~~~~~~~~~~~~~~~~~~--- 350 (1041)
T COG4581 318 KK------FNAENF-----------------------P---------------SANRSLSCFSEKVRETDDGDVGRY--- 350 (1041)
T ss_pred cc------chhhcc-----------------------h---------------hhhhhhhccchhccccCccccccc---
Confidence 00 000000 0 0000000000 00000000000
Q ss_pred cccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHh-------------------
Q 004098 474 EFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG------------------- 534 (774)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~------------------- 534 (774)
+......+. ......+...++..|... ..-++|+|+-+++.|+..+..+..
T Consensus 351 -------a~~~~~~~~--~~~~~~~~~~iv~~l~~~-~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~ 420 (1041)
T COG4581 351 -------ARRTKALRG--SAKGPAGRPEIVNKLDKD-NLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDH 420 (1041)
T ss_pred -------cccccccCC--cccccccchHHHhhhhhh-cCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHH
Confidence 000000000 000011112223333221 345899999999999999987763
Q ss_pred ---------CCC-------------ceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCC---
Q 004098 535 ---------FGV-------------KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW--- 589 (774)
Q Consensus 535 ---------~g~-------------~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~--- 589 (774)
+++ ....+|+||-+..|..+.+.|..|-++||+||.++++|||.|. +.|+.+.+
T Consensus 421 ~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa-rtvv~~~l~K~ 499 (1041)
T COG4581 421 AIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA-RTVVFTSLSKF 499 (1041)
T ss_pred HHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc-cceeeeeeEEe
Confidence 111 2458999999999999999999999999999999999999995 66665554
Q ss_pred ------CCCHHHHHHHhhccccCCC--cceEEEEeeC
Q 004098 590 ------PQSLEAYYQEAGRAGRDGH--LADCVLYANL 618 (774)
Q Consensus 590 ------p~s~~~y~Qr~GRaGR~G~--~g~~il~~~~ 618 (774)
+-+...|.|+.|||||.|. .|.+++...+
T Consensus 500 dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 500 DGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred cCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 4578999999999999996 4777776443
No 95
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=2.9e-26 Score=260.80 Aligned_cols=332 Identities=23% Similarity=0.255 Sum_probs=232.9
Q ss_pred hcCCCCCCHHHHHHHHHHHcC-CCEEEEecCCCchHHHHHHhhhcc--------------CCeEEEEccchHHHHHHHHH
Q 004098 168 HFGHSSLKNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQIPALLT--------------GKVVVVISPLISLMHDQCSK 232 (774)
Q Consensus 168 ~~g~~~~r~~Q~~ai~~il~g-~d~lv~apTGsGKTl~~~lpal~~--------------~~~~LVvsPt~~L~~qq~~~ 232 (774)
.+|..+|.++|..+..+++.+ .|+++|||||+|||-.+++-+|.. ..++++|+|+++|++.|+..
T Consensus 304 F~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 304 FFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred cccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHH
Confidence 458888999999999999976 589999999999999999999852 45899999999999999997
Q ss_pred HHh----cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc-CCCCcHH
Q 004098 233 LSK----HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK-WGHDFRP 307 (774)
Q Consensus 233 l~~----~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~-~g~~fr~ 307 (774)
+.+ +||.+..++++......+ -...+|+|+|||..--.-..-....-..-++++||||.|.+-+ .|.....
T Consensus 384 fSkRla~~GI~V~ElTgD~~l~~~q----ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLES 459 (1674)
T KOG0951|consen 384 FSKRLAPLGITVLELTGDSQLGKEQ----IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLES 459 (1674)
T ss_pred HHhhccccCcEEEEecccccchhhh----hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHH
Confidence 765 599999999886643222 1346999999998732211100111123478999999999954 6643333
Q ss_pred HHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCC-CCcEEEEeecCCccchhhh
Q 004098 308 DYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFR-PNLRFSVKHSKTSSRASYK 386 (774)
Q Consensus 308 ~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r-~~l~~~v~~~~~~~~~~~~ 386 (774)
...+.. ++.-. -.....+++||||++ +.+|+...|+...+..++..+.+| -++...+.....+.+ .
T Consensus 460 IVaRt~--r~ses------~~e~~RlVGLSATLP--Ny~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~---~ 526 (1674)
T KOG0951|consen 460 IVARTF--RRSES------TEEGSRLVGLSATLP--NYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKP---L 526 (1674)
T ss_pred HHHHHH--HHhhh------cccCceeeeecccCC--chhhhHHHhccCcccccccCcccCcCCccceEeccccCCc---h
Confidence 333321 11111 112678999999997 456777777665444444444444 466665554322211 1
Q ss_pred HhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCc
Q 004098 387 KDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVD 466 (774)
Q Consensus 387 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 466 (774)
+.++..-+
T Consensus 527 ~~~qamNe------------------------------------------------------------------------ 534 (1674)
T KOG0951|consen 527 KRFQAMNE------------------------------------------------------------------------ 534 (1674)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 11111111
Q ss_pred ccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHh------------
Q 004098 467 DWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG------------ 534 (774)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~------------ 534 (774)
.-.+.+.+....+++|||+.+|+++-+.|+.++.
T Consensus 535 ----------------------------------~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fm 580 (1674)
T KOG0951|consen 535 ----------------------------------ACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFM 580 (1674)
T ss_pred ----------------------------------HHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHH
Confidence 1112222223457999999999999999998772
Q ss_pred -------------------------CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEE----
Q 004098 535 -------------------------FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRII---- 585 (774)
Q Consensus 535 -------------------------~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI---- 585 (774)
..+..+.+|+||+..+|..+.+.|..|.++|||+|-.++.|+|+|.-.++|
T Consensus 581 re~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtq 660 (1674)
T KOG0951|consen 581 REDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQ 660 (1674)
T ss_pred hcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCcc
Confidence 235689999999999999999999999999999999999999999855555
Q ss_pred EeCC------CCCHHHHHHHhhccccCC--CcceEEEEeeCCCCC
Q 004098 586 HYGW------PQSLEAYYQEAGRAGRDG--HLADCVLYANLSSMP 622 (774)
Q Consensus 586 ~~d~------p~s~~~y~Qr~GRaGR~G--~~g~~il~~~~~~~~ 622 (774)
-||. +.++.+.+||.|||||.+ +.|..++.-+.++..
T Consensus 661 vy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~q 705 (1674)
T KOG0951|consen 661 VYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQ 705 (1674)
T ss_pred ccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhh
Confidence 4553 458999999999999965 556677665544443
No 96
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=2.6e-26 Score=249.71 Aligned_cols=351 Identities=18% Similarity=0.207 Sum_probs=238.2
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHH--HHHhh-hccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEc
Q 004098 168 HFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLC--FQIPA-LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLG 244 (774)
Q Consensus 168 ~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~--~~lpa-l~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~ 244 (774)
.+.| .+-|+|..||..+-+++.++|.|.|.+|||.+ |.+.. |-...++|+.+|.++|-+|.+++|..---.+..++
T Consensus 125 ~YPF-~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMT 203 (1041)
T KOG0948|consen 125 TYPF-TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMT 203 (1041)
T ss_pred CCCc-ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceee
Confidence 4556 58999999999999999999999999999987 44444 34577999999999999999999987545666777
Q ss_pred CCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc--CCCCcHHHHHHHHHHHHHhccc
Q 004098 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK--WGHDFRPDYRRLSVLRENFGAN 322 (774)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~--~g~~fr~~~~~l~~l~~~~~~~ 322 (774)
|+.+. +..+.-+|+|.|.|..++. ++.--.+.+.+||+||.|.|-+ .|-.|..
T Consensus 204 GDVTI--------nP~ASCLVMTTEILRsMLY--RGSEvmrEVaWVIFDEIHYMRDkERGVVWEE--------------- 258 (1041)
T KOG0948|consen 204 GDVTI--------NPDASCLVMTTEILRSMLY--RGSEVMREVAWVIFDEIHYMRDKERGVVWEE--------------- 258 (1041)
T ss_pred cceee--------CCCCceeeeHHHHHHHHHh--ccchHhheeeeEEeeeehhccccccceeeee---------------
Confidence 66543 3456789999999998887 5555568899999999999964 4533322
Q ss_pred ccccccCCCCEEEEeccCCHHH-HHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCcc--------chhhhHhHHHHH
Q 004098 323 NLKSLKFDIPLMALTATATIQV-REDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS--------RASYKKDFCQLI 393 (774)
Q Consensus 323 ~~~~l~~~~~il~lTAT~~~~~-~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~--------~~~~~~~l~~l~ 393 (774)
.+--+|.++..++||||.+... ..+.+..++-. ++.++.+.+..-+++..+.+..... ..--.++|+..+
T Consensus 259 TIIllP~~vr~VFLSATiPNA~qFAeWI~~ihkQ-PcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am 337 (1041)
T KOG0948|consen 259 TIILLPDNVRFVFLSATIPNARQFAEWICHIHKQ-PCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAM 337 (1041)
T ss_pred eEEeccccceEEEEeccCCCHHHHHHHHHHHhcC-CceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHH
Confidence 2444677999999999997643 34455556654 5666777776666665544421110 001123344444
Q ss_pred HHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccc
Q 004098 394 DIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACG 473 (774)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 473 (774)
..+.......+.... ..+ ......+.
T Consensus 338 ~~l~~~~~~~~~~~~---------------------------~~k--~~kG~~~~------------------------- 363 (1041)
T KOG0948|consen 338 SVLRKAGESDGKKKA---------------------------NKK--GRKGGTGG------------------------- 363 (1041)
T ss_pred HHhhccCCCcccccc---------------------------ccc--cccCCcCC-------------------------
Confidence 433321110000000 000 00000000
Q ss_pred cccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCC-----------------
Q 004098 474 EFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG----------------- 536 (774)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g----------------- 536 (774)
.........+++..+... ...|+|||+-++++|+.+|-.|.+..
T Consensus 364 ------------------~~~~~s~i~kiVkmi~~~-~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nA 424 (1041)
T KOG0948|consen 364 ------------------KGPGDSDIYKIVKMIMER-NYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNA 424 (1041)
T ss_pred ------------------CCCCcccHHHHHHHHHhh-cCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHH
Confidence 000001112222222222 34599999999999999999876511
Q ss_pred ----------------------CceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCC---
Q 004098 537 ----------------------VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ--- 591 (774)
Q Consensus 537 ----------------------~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~--- 591 (774)
-.+..+|+||-+--++-+.-.|..|-+++|.||..|++|+|.|. +.|+....-+
T Consensus 425 i~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPA-kTVvFT~~rKfDG 503 (1041)
T KOG0948|consen 425 IDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPA-KTVVFTAVRKFDG 503 (1041)
T ss_pred HHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcc-eeEEEeeccccCC
Confidence 13578999999999888888999999999999999999999996 5666554422
Q ss_pred ------CHHHHHHHhhccccCCC--cceEEEEeeCC
Q 004098 592 ------SLEAYYQEAGRAGRDGH--LADCVLYANLS 619 (774)
Q Consensus 592 ------s~~~y~Qr~GRaGR~G~--~g~~il~~~~~ 619 (774)
|--+|+|++|||||.|. .|.||++++..
T Consensus 504 ~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 504 KKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 45689999999999994 68888887643
No 97
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=5.5e-25 Score=255.34 Aligned_cols=319 Identities=18% Similarity=0.185 Sum_probs=243.4
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHc----C--CCEEEEecCCCchHHHHHH---hhhccCCeEEEEccchHH
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLA----H--HDCLVLAATGSGKSLCFQI---PALLTGKVVVVISPLISL 225 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~----g--~d~lv~apTGsGKTl~~~l---pal~~~~~~LVvsPt~~L 225 (774)
++.+.+....+...|+| .-||-|..||..+.+ + .|-|||+--|.|||-+++- .|+..++.|.|++||--|
T Consensus 577 f~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlL 655 (1139)
T COG1197 577 FPPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLL 655 (1139)
T ss_pred CCCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHh
Confidence 34444455566677888 479999999999885 3 4899999999999988664 456789999999999999
Q ss_pred HHHHHHHHHh----cCCcEEEEcCCCCh---HHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 004098 226 MHDQCSKLSK----HGVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (774)
Q Consensus 226 ~~qq~~~l~~----~gi~~~~l~~~~~~---~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l 298 (774)
++|.++.|++ |++++..+..-.+. ......+..|..||||+|---| .+.+.++++.++||||-|+.
T Consensus 656 A~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-------~kdv~FkdLGLlIIDEEqRF 728 (1139)
T COG1197 656 AQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-------SKDVKFKDLGLLIIDEEQRF 728 (1139)
T ss_pred HHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-------CCCcEEecCCeEEEechhhc
Confidence 9999999987 36777777554444 3345566789999999996533 34456788999999999997
Q ss_pred ccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecC
Q 004098 299 SKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378 (774)
Q Consensus 299 ~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~ 378 (774)
. -.-.+.+.. ++.++-+|-|||||-|.... +..+|+.+-..+-....+|-+++-.|.+..
T Consensus 729 G---Vk~KEkLK~---------------Lr~~VDvLTLSATPIPRTL~--Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d 788 (1139)
T COG1197 729 G---VKHKEKLKE---------------LRANVDVLTLSATPIPRTLN--MSLSGIRDLSVIATPPEDRLPVKTFVSEYD 788 (1139)
T ss_pred C---ccHHHHHHH---------------HhccCcEEEeeCCCCcchHH--HHHhcchhhhhccCCCCCCcceEEEEecCC
Confidence 3 111222222 23388999999999998877 555666643334444555655555554422
Q ss_pred CccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhh
Q 004098 379 TSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVE 458 (774)
Q Consensus 379 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (774)
... +
T Consensus 789 ~~~-------i--------------------------------------------------------------------- 792 (1139)
T COG1197 789 DLL-------I--------------------------------------------------------------------- 792 (1139)
T ss_pred hHH-------H---------------------------------------------------------------------
Confidence 110 0
Q ss_pred hhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhC--C
Q 004098 459 FLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF--G 536 (774)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~--g 536 (774)
.-.++.+...+|++-..+|.++..+.+++.|++. .
T Consensus 793 -------------------------------------------reAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPE 829 (1139)
T COG1197 793 -------------------------------------------REAILRELLRGGQVFYVHNRVESIEKKAERLRELVPE 829 (1139)
T ss_pred -------------------------------------------HHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCc
Confidence 0111223336888999999999999999999985 5
Q ss_pred CceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCC-CHHHHHHHhhccccCCCcceEEEE
Q 004098 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ-SLEAYYQEAGRAGRDGHLADCVLY 615 (774)
Q Consensus 537 ~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~-s~~~y~Qr~GRaGR~G~~g~~il~ 615 (774)
.++..-||.|+..+-++++..|.+|+++|||||.+.+.|||+|+++.+|..+... -+...||-.||.||..+.|.|+++
T Consensus 830 arI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl 909 (1139)
T COG1197 830 ARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFL 909 (1139)
T ss_pred eEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEe
Confidence 6789999999999999999999999999999999999999999999999776653 588999999999999999999999
Q ss_pred eeCCC
Q 004098 616 ANLSS 620 (774)
Q Consensus 616 ~~~~~ 620 (774)
|....
T Consensus 910 ~p~~k 914 (1139)
T COG1197 910 YPPQK 914 (1139)
T ss_pred ecCcc
Confidence 87543
No 98
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.94 E-value=3.4e-25 Score=267.43 Aligned_cols=345 Identities=16% Similarity=0.172 Sum_probs=195.3
Q ss_pred CCCHHHHHHHHHHHc-----CCCEEEEecCCCchHHHHHHhh--hc---cCCeEEEEccchHHHHHHHHHHHhcCCcEEE
Q 004098 173 SLKNFQKEALSAWLA-----HHDCLVLAATGSGKSLCFQIPA--LL---TGKVVVVISPLISLMHDQCSKLSKHGVTACF 242 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~-----g~d~lv~apTGsGKTl~~~lpa--l~---~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~ 242 (774)
.+|+||.+||.++.. .+.+|++||||+|||++++..+ +. ..+++|||+|+++|+.|+...+..++.....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~ 492 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQ 492 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccccc
Confidence 589999999988763 3679999999999998743222 22 2469999999999999999999987653321
Q ss_pred EcCCC-ChHHHHHHHHcCCceEEEEChHHHHHHHHHHH---HHHHhcCccEEEEeccccccc----CC---CCcH---HH
Q 004098 243 LGSGQ-PDNKVEQKALRGMYSIIYVCPETVIRLIKPLQ---RLAESRGIALFAIDEVHCVSK----WG---HDFR---PD 308 (774)
Q Consensus 243 l~~~~-~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~---~~~~~~~i~~iVIDEaH~l~~----~g---~~fr---~~ 308 (774)
...+. ..............+|+|+|.+++.+.+.... .......+++|||||||+... .+ ..|+ ..
T Consensus 493 ~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~ 572 (1123)
T PRK11448 493 TFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDY 572 (1123)
T ss_pred chhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhhH
Confidence 00000 00011111123446999999999876432101 112346789999999999631 00 0122 22
Q ss_pred HHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEE------ccCC---CCCcEEEEeecCC
Q 004098 309 YRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVL------TSFF---RPNLRFSVKHSKT 379 (774)
Q Consensus 309 ~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~------~~~~---r~~l~~~v~~~~~ 379 (774)
|.....+...| +...|+|||||..... ..++- +...+. ..+. .+++.+.......
T Consensus 573 ~~~yr~iL~yF----------dA~~IGLTATP~r~t~----~~FG~--pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~ 636 (1123)
T PRK11448 573 VSKYRRVLDYF----------DAVKIGLTATPALHTT----EIFGE--PVYTYSYREAVIDGYLIDHEPPIRIETRLSQE 636 (1123)
T ss_pred HHHHHHHHhhc----------CccEEEEecCCccchh----HHhCC--eeEEeeHHHHHhcCCcccCcCCEEEEEEeccc
Confidence 33333333333 4578999999974332 22221 111000 0111 1233333211110
Q ss_pred ccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhh
Q 004098 380 SSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEF 459 (774)
Q Consensus 380 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (774)
...-.-.+.+. ..+..... .....++... .|. .......
T Consensus 637 gi~~~~~e~~~-~~~~~~~~-----i~~~~l~d~~-------------------------~~~----------~~~~~~~ 675 (1123)
T PRK11448 637 GIHFEKGEEVE-VINTQTGE-----IDLATLEDEV-------------------------DFE----------VEDFNRR 675 (1123)
T ss_pred cccccccchhh-hcchhhhh-----hhhccCcHHH-------------------------hhh----------HHHHHHH
Confidence 00000000000 00000000 0000000000 000 0000000
Q ss_pred hhcCCCcccccccccccCCCCCCCCCCccchhhccccCc-hhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhC---
Q 004098 460 LENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNK-PAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF--- 535 (774)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~--- 535 (774)
+.+. ..... ...+++.+... ..+++||||.++..|+.+++.|.+.
T Consensus 676 vi~~------------------------------~~~~~i~~~l~~~l~~~-~~~KtiIF~~s~~HA~~i~~~L~~~f~~ 724 (1123)
T PRK11448 676 VITE------------------------------SFNRVVCEELAKYLDPT-GEGKTLIFAATDAHADMVVRLLKEAFKK 724 (1123)
T ss_pred HhhH------------------------------HHHHHHHHHHHHHHhcc-CCCcEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 0000 00000 01122222222 2479999999999999999988753
Q ss_pred ---CC---ceEEecCCCCHHHHHHHHHHHhcCCc-eEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCC
Q 004098 536 ---GV---KAAAYNASLPKSQLRRVHTEFHENKL-EVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607 (774)
Q Consensus 536 ---g~---~~~~~h~~l~~~~R~~~~~~F~~g~~-~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G 607 (774)
++ .+..+||+.+ ++.+++++|++++. .|+|+++++.+|+|+|.|.+||++..+.|...|+|++||+.|--
T Consensus 725 ~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 725 KYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred hcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 22 4567888875 46789999999987 69999999999999999999999999999999999999999964
No 99
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=3.1e-24 Score=245.76 Aligned_cols=417 Identities=17% Similarity=0.163 Sum_probs=256.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHh--
Q 004098 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK-- 235 (774)
Q Consensus 161 l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~-- 235 (774)
+.++-++.+|+ .+++.|.-.--.+.+|+ |+.|+||.|||++|.+|+++ .+..+.||+|+..|+.+-.+++..
T Consensus 71 vrEaa~R~lgm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 71 VREASKRVFEM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred HHHHHHHHhCC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 44555667787 58888877766665565 99999999999999999975 467799999999999988888776
Q ss_pred --cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHH-HHHHHHH----HHHHHhcCccEEEEeccccccc--------
Q 004098 236 --HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV-IRLIKPL----QRLAESRGIALFAIDEVHCVSK-------- 300 (774)
Q Consensus 236 --~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l-~~ll~~~----~~~~~~~~i~~iVIDEaH~l~~-------- 300 (774)
+|+.+.++.++.+... +...-.++|+|+||..| .+++... ....-...+.++||||||.++-
T Consensus 148 ~~lGlsv~~i~~~~~~~~---r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLI 224 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQE---KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLI 224 (908)
T ss_pred HhcCCeEEEecCCCCHHH---HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCcee
Confidence 4899999888776532 22223579999999998 5655521 0111237789999999998741
Q ss_pred ---CCCCcHHHHHHHHHHHHHhcccc-----------cccccCCCCEEEEeccCCHHHHHHHHHHc---CCCC-CceEEE
Q 004098 301 ---WGHDFRPDYRRLSVLRENFGANN-----------LKSLKFDIPLMALTATATIQVREDILKSL---HMSK-GTKFVL 362 (774)
Q Consensus 301 ---~g~~fr~~~~~l~~l~~~~~~~~-----------~~~l~~~~~il~lTAT~~~~~~~~i~~~L---~~~~-~~~~~~ 362 (774)
....-...|..+..+...+.... --.+......+-|| ..-.+.+...| ++.. ...++.
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LT----e~G~~~~e~~l~~~~~~~~~~~l~~ 300 (908)
T PRK13107 225 ISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFT----ERGQEKVENLLIERGMLAEGDSLYS 300 (908)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeec----hHHHHHHHHHHHhCCcccCcccccC
Confidence 11122345555555444432100 00011122334443 22333333333 1100 000000
Q ss_pred ----------------ccCCCCCcEEEEeecCC----------ccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCC
Q 004098 363 ----------------TSFFRPNLRFSVKHSKT----------SSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDD 416 (774)
Q Consensus 363 ----------------~~~~r~~l~~~v~~~~~----------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 416 (774)
..++..+..|.|...+- -....|.+-+++.++.-..-
T Consensus 301 ~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v----------------- 363 (908)
T PRK13107 301 AANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGV----------------- 363 (908)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCC-----------------
Confidence 00122333343332110 01123445555555421100
Q ss_pred ccCccCCCccccccc-CCCCCCCCCCCC--ccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhc
Q 004098 417 QSDTSSSSSMSEESR-ISPNIGDGYYDD--EDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERT 493 (774)
Q Consensus 417 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (774)
....+.. .+.--.+.+|.. ...|++.+......+|..-.++ ..-.+..+.|....+.... ...
T Consensus 364 --------~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l-----~Vv~IPTnkp~~R~d~~d~-iy~ 429 (908)
T PRK13107 364 --------HIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGL-----DTVVVPTNRPMVRKDMADL-VYL 429 (908)
T ss_pred --------CCCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCC-----CEEECCCCCCccceeCCCc-EEe
Confidence 0000000 000011112211 3445555555555555543222 2222222333221111111 112
Q ss_pred cccCchhHhhhhccCCC-CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEeccc
Q 004098 494 DLLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572 (774)
Q Consensus 494 ~~~~k~~~ll~~L~~~~-~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~ 572 (774)
....|...+++.+.+.. .+.|+||||.|+..++.++..|...|+++..+||.+++.++..+.+.|+.|. |+|||+++
T Consensus 430 t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmA 507 (908)
T PRK13107 430 TADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMA 507 (908)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCc
Confidence 23456666666665543 4569999999999999999999999999999999999999999999999998 99999999
Q ss_pred ccCcccCC--------------------------------c-----ceEEEeCCCCCHHHHHHHhhccccCCCcceEEEE
Q 004098 573 GMGIDKLN--------------------------------V-----RRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (774)
Q Consensus 573 ~~GIDip~--------------------------------V-----~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~ 615 (774)
|||+||.= | -+||-...+.|..---|-.|||||.|.||.+.+|
T Consensus 508 GRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~ 587 (908)
T PRK13107 508 GRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFY 587 (908)
T ss_pred CCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEE
Confidence 99999961 2 3799999999999999999999999999999999
Q ss_pred eeCCC
Q 004098 616 ANLSS 620 (774)
Q Consensus 616 ~~~~~ 620 (774)
++..|
T Consensus 588 lSlED 592 (908)
T PRK13107 588 LSMED 592 (908)
T ss_pred EEeCc
Confidence 98766
No 100
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=5.5e-24 Score=243.86 Aligned_cols=127 Identities=24% Similarity=0.342 Sum_probs=104.1
Q ss_pred hcCCCCC---CHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHhc----C
Q 004098 168 HFGHSSL---KNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKH----G 237 (774)
Q Consensus 168 ~~g~~~~---r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~~----g 237 (774)
..||..| +|+|.++|+.++.++|+++.|+||+|||++|.+|++. .+..++||+||++|+.|..+.+..+ |
T Consensus 84 ~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lG 163 (970)
T PRK12899 84 VSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLG 163 (970)
T ss_pred cccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 3478877 9999999999999999999999999999999999985 3456899999999999999888764 7
Q ss_pred CcEEEEcCCCChHHHHHHHHcCCceEEEEChHHH-HHHHHHHHHHHH-------hcCccEEEEecccccc
Q 004098 238 VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV-IRLIKPLQRLAE-------SRGIALFAIDEVHCVS 299 (774)
Q Consensus 238 i~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l-~~ll~~~~~~~~-------~~~i~~iVIDEaH~l~ 299 (774)
+.+..+.+|.+....... . .++|+|+||++| .+++. .+.+. ...+.++||||||.|+
T Consensus 164 LsV~~i~GG~~~~eq~~~-y--~~DIVygTPgRLgfDyLr--d~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 164 LTTGVLVSGSPLEKRKEI-Y--QCDVVYGTASEFGFDYLR--DNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred CeEEEEeCCCCHHHHHHH-c--CCCEEEECCChhHHHHhh--CCCCCcCHHHhhcccccEEEEechhhhh
Confidence 889888888776543322 2 489999999999 77776 22122 2467899999999874
No 101
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.92 E-value=2e-24 Score=242.99 Aligned_cols=351 Identities=24% Similarity=0.300 Sum_probs=239.8
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHH--HHHHcCCCEEEEecCCCchHHHHHHhhh----ccCCeEEEEccchHHHHHHH
Q 004098 157 WEVKVNSLLKKHFGHSSLKNFQKEAL--SAWLAHHDCLVLAATGSGKSLCFQIPAL----LTGKVVVVISPLISLMHDQC 230 (774)
Q Consensus 157 ~~~~l~~~L~~~~g~~~~r~~Q~~ai--~~il~g~d~lv~apTGsGKTl~~~lpal----~~~~~~LVvsPt~~L~~qq~ 230 (774)
....+.....+.+|...+..+|.+++ +.++.++|+|..+||+.|||+++-+.++ .....++.+.|..+.++...
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~ 286 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKI 286 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHH
Confidence 34445555556779999999999987 6688899999999999999999887765 46889999999999999988
Q ss_pred HHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCc-
Q 004098 231 SKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF- 305 (774)
Q Consensus 231 ~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~f- 305 (774)
..+..+ |+++-..+|..+.... .+...+.|+|.|+-..++..+-..-++..+++|||||-|.+.+-|.+.
T Consensus 287 ~~l~~~~~~~G~~ve~y~g~~~p~~~-----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~ 361 (1008)
T KOG0950|consen 287 SALSPFSIDLGFPVEEYAGRFPPEKR-----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAI 361 (1008)
T ss_pred hhhhhhccccCCcchhhcccCCCCCc-----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchH
Confidence 888775 6777666665554321 234589999999988777655555556778999999999998755322
Q ss_pred -HHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchh
Q 004098 306 -RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRAS 384 (774)
Q Consensus 306 -r~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~ 384 (774)
+.-+.++ +... ....+|++++|||.+. ..++..+|. ..++.+.|..-++.-.++........+
T Consensus 362 lE~~l~k~--~y~~--------~~~~~~iIGMSATi~N--~~lL~~~L~----A~~y~t~fRPv~L~E~ik~G~~i~~~~ 425 (1008)
T KOG0950|consen 362 LELLLAKI--LYEN--------LETSVQIIGMSATIPN--NSLLQDWLD----AFVYTTRFRPVPLKEYIKPGSLIYESS 425 (1008)
T ss_pred HHHHHHHH--HHhc--------cccceeEeeeecccCC--hHHHHHHhh----hhheecccCcccchhccCCCcccccch
Confidence 2222222 1111 1224789999999964 445666663 344444444444443333222111100
Q ss_pred hhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCC
Q 004098 385 YKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDS 464 (774)
Q Consensus 385 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (774)
-.+.+..+...+ ..+.+
T Consensus 426 r~~~lr~ia~l~---------------------------------------------------------------~~~~g 442 (1008)
T KOG0950|consen 426 RNKVLREIANLY---------------------------------------------------------------SSNLG 442 (1008)
T ss_pred hhHHHHHhhhhh---------------------------------------------------------------hhhcc
Confidence 001111111100 00000
Q ss_pred CcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCC-CCCcEEEEeCchHHHHHHHHHHHh---------
Q 004098 465 VDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCG--------- 534 (774)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~-~~~~~IIF~~sr~~~~~l~~~L~~--------- 534 (774)
.++ .+.+..+..+.. ++.++||||++|+.|+.+|..+..
T Consensus 443 ~~d-------------------------------pD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e 491 (1008)
T KOG0950|consen 443 DED-------------------------------PDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSE 491 (1008)
T ss_pred cCC-------------------------------CcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhh
Confidence 000 000111111112 344699999999999999976543
Q ss_pred -----------------------------CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEE
Q 004098 535 -----------------------------FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRII 585 (774)
Q Consensus 535 -----------------------------~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI 585 (774)
..+.++++|+|++.++|+.+...|+.|-+.|++||+.++-|+|.|..+++|
T Consensus 492 ~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIi 571 (1008)
T KOG0950|consen 492 KRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVII 571 (1008)
T ss_pred hhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEE
Confidence 124588999999999999999999999999999999999999999999988
Q ss_pred EeCC----CCCHHHHHHHhhccccCC--CcceEEEEeeCCCCC
Q 004098 586 HYGW----PQSLEAYYQEAGRAGRDG--HLADCVLYANLSSMP 622 (774)
Q Consensus 586 ~~d~----p~s~~~y~Qr~GRaGR~G--~~g~~il~~~~~~~~ 622 (774)
-.-+ +.+.-.|.|++|||||.| ..|.+++.+...+..
T Consensus 572 raP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~ 614 (1008)
T KOG0950|consen 572 RAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKK 614 (1008)
T ss_pred eCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchh
Confidence 6543 356779999999999998 468999999877653
No 102
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=1.4e-24 Score=238.88 Aligned_cols=395 Identities=14% Similarity=0.161 Sum_probs=263.5
Q ss_pred CCCHHHHHHHHHHHc----CCCEEEEecCCCchHH--HHHHhhhcc----CCeEEEEccchHHHHHHHHHHHhcC--CcE
Q 004098 173 SLKNFQKEALSAWLA----HHDCLVLAATGSGKSL--CFQIPALLT----GKVVVVISPLISLMHDQCSKLSKHG--VTA 240 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~----g~d~lv~apTGsGKTl--~~~lpal~~----~~~~LVvsPt~~L~~qq~~~l~~~g--i~~ 240 (774)
.+.+||++.+.|+.. +.-.|+-..+|.|||+ +..|.+|+. .+.+|||||. .|+.||+.+|..|. .++
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~rv 283 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFRV 283 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceEE
Confidence 577899999999874 5568999999999996 333455543 3789999995 99999999999985 556
Q ss_pred EEEcCCCCh--------HHHHHHHH----cCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHH
Q 004098 241 CFLGSGQPD--------NKVEQKAL----RGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPD 308 (774)
Q Consensus 241 ~~l~~~~~~--------~~~~~~~~----~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~ 308 (774)
..+++.... ......++ ...-.|+++|++.+.-. ...+....|.++|+||.|++-...
T Consensus 284 ~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~----~d~l~~~~W~y~ILDEGH~IrNpn------ 353 (923)
T KOG0387|consen 284 FILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ----GDDLLGILWDYVILDEGHRIRNPN------ 353 (923)
T ss_pred EEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc----CcccccccccEEEecCcccccCCc------
Confidence 666665542 11111111 22347999999976432 222334569999999999996544
Q ss_pred HHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccc------
Q 004098 309 YRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR------ 382 (774)
Q Consensus 309 ~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~------ 382 (774)
.++......++ .++.+.||+||-++...+++..+.+-.+...-....+..++...+.......+
T Consensus 354 -s~islackki~---------T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~ 423 (923)
T KOG0387|consen 354 -SKISLACKKIR---------TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQ 423 (923)
T ss_pred -cHHHHHHHhcc---------ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHH
Confidence 33333333333 67899999999999999999887554332222222223333322222222111
Q ss_pred --hhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhh
Q 004098 383 --ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFL 460 (774)
Q Consensus 383 --~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 460 (774)
-.....++.++..|..++.+.+....-+++..+.+.-. ..++.++++..+|+
T Consensus 424 ~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC--------------------------~LT~~QR~~Y~~fl 477 (923)
T KOG0387|consen 424 TAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFC--------------------------RLTKLQRRLYQRFL 477 (923)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEE--------------------------eccHHHHHHHHHHh
Confidence 12234577777777766655544442222221111000 01112233333443
Q ss_pred hcC--------------CCcccccccccccCCCCCC---CCCCccchhhccccCchhHhhhhccCCCCC-CcEEEEeCch
Q 004098 461 END--------------SVDDWDVACGEFYGHSPHR---DRDTDRSFERTDLLNKPAERLSMLQEPLED-GLTIIYVPTR 522 (774)
Q Consensus 461 ~~~--------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~-~~~IIF~~sr 522 (774)
... +++.....|.+.-....+. ...++.. -....+.|...+..+|..+... .++|+|.+++
T Consensus 478 ~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~-g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~ 556 (923)
T KOG0387|consen 478 NSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDEKQGPDYE-GDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSR 556 (923)
T ss_pred hhHHHHHHHcCCccceechHHHHhhcCCcccccCcccccccCCCcC-CChhhcchHHHHHHHHHHHhhCCCEEEEehhHH
Confidence 322 3444455666665544431 1111110 1223345666677777766554 4999999999
Q ss_pred HHHHHHHHHHH-hCCCceEEecCCCCHHHHHHHHHHHhcCC--ceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHH
Q 004098 523 KETLSIAKYLC-GFGVKAAAYNASLPKSQLRRVHTEFHENK--LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQE 599 (774)
Q Consensus 523 ~~~~~l~~~L~-~~g~~~~~~h~~l~~~~R~~~~~~F~~g~--~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr 599 (774)
...+.|...|. ..|+.+..+.|..+...|..++++|.++. .-+|++|.|+|.|+|+...+-||.||+.||+..-.|.
T Consensus 557 ~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QA 636 (923)
T KOG0387|consen 557 QMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQA 636 (923)
T ss_pred HHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHH
Confidence 99999999999 68999999999999999999999999775 4578999999999999999999999999999999999
Q ss_pred hhccccCCCcceEEEE
Q 004098 600 AGRAGRDGHLADCVLY 615 (774)
Q Consensus 600 ~GRaGR~G~~g~~il~ 615 (774)
.-||-|.|++..+++|
T Consensus 637 reRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 637 RERAWRIGQKKDVVVY 652 (923)
T ss_pred HHHHHhhcCccceEEE
Confidence 9999999999988887
No 103
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.92 E-value=2e-22 Score=202.73 Aligned_cols=315 Identities=21% Similarity=0.246 Sum_probs=209.4
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEecCCCchHH-HHHHh--hhccCCeEEEEccchHHHHHHHHHHHh-c-CCcEEEE
Q 004098 173 SLKNFQKEALSAWL----AHHDCLVLAATGSGKSL-CFQIP--ALLTGKVVVVISPLISLMHDQCSKLSK-H-GVTACFL 243 (774)
Q Consensus 173 ~~r~~Q~~ai~~il----~g~d~lv~apTGsGKTl-~~~lp--al~~~~~~LVvsPt~~L~~qq~~~l~~-~-gi~~~~l 243 (774)
+++|+|+.+-+.++ +.+++||.|-||+|||- .|+.. ++..|+.+.+.+|....+.+.+..|++ | +.....+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 79999998877766 47899999999999995 46543 466899999999999999999999988 3 5888889
Q ss_pred cCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHH-HHHHHHHHHHhccc
Q 004098 244 GSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPD-YRRLSVLRENFGAN 322 (774)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~-~~~l~~l~~~~~~~ 322 (774)
+++.++.- ...++|+|...|.++.+ -++++||||+|... |..+ ..+.. +.+..
T Consensus 177 yg~S~~~f--------r~plvVaTtHQLlrFk~---------aFD~liIDEVDAFP-----~~~d~~L~~A-v~~ar--- 230 (441)
T COG4098 177 YGDSDSYF--------RAPLVVATTHQLLRFKQ---------AFDLLIIDEVDAFP-----FSDDQSLQYA-VKKAR--- 230 (441)
T ss_pred ecCCchhc--------cccEEEEehHHHHHHHh---------hccEEEEecccccc-----ccCCHHHHHH-HHHhh---
Confidence 88776532 24899999998877654 27999999999874 2211 11111 11111
Q ss_pred ccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEE--EeecCCccchhhhHhHHHHHHHHHhhh
Q 004098 323 NLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFS--VKHSKTSSRASYKKDFCQLIDIYTKKK 400 (774)
Q Consensus 323 ~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~--v~~~~~~~~~~~~~~l~~l~~~~~~~~ 400 (774)
...-.++.||||++.+...++...=- ....+-..|.+.++-.. ++.. .+.+.+.+
T Consensus 231 -----k~~g~~IylTATp~k~l~r~~~~g~~---~~~klp~RfH~~pLpvPkf~w~~------~~~k~l~r--------- 287 (441)
T COG4098 231 -----KKEGATIYLTATPTKKLERKILKGNL---RILKLPARFHGKPLPVPKFVWIG------NWNKKLQR--------- 287 (441)
T ss_pred -----cccCceEEEecCChHHHHHHhhhCCe---eEeecchhhcCCCCCCCceEEec------cHHHHhhh---------
Confidence 12678999999999887776643210 01112222332222110 0000 11111100
Q ss_pred cccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCC
Q 004098 401 KTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSP 480 (774)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 480 (774)
T Consensus 288 -------------------------------------------------------------------------------- 287 (441)
T COG4098 288 -------------------------------------------------------------------------------- 287 (441)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccchhhccccCchhHhhhhccCC-CCCCcEEEEeCchHHHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHH
Q 004098 481 HRDRDTDRSFERTDLLNKPAERLSMLQEP-LEDGLTIIYVPTRKETLSIAKYLCGF--GVKAAAYNASLPKSQLRRVHTE 557 (774)
Q Consensus 481 ~~~~~~~~~~~~~~~~~k~~~ll~~L~~~-~~~~~~IIF~~sr~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~ 557 (774)
..-..++...|++. ..+.+++||+++....+.++..|++. ...+...|+. ...|.+..++
T Consensus 288 ---------------~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~ 350 (441)
T COG4098 288 ---------------NKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEA 350 (441)
T ss_pred ---------------ccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHH
Confidence 00001122222222 14569999999999999999999553 3355778874 5678999999
Q ss_pred HhcCCceEEEEecccccCcccCCcceEEEeCC--CCCHHHHHHHhhccccCC--CcceEEEEeeCCCCCccCCCCCCHHH
Q 004098 558 FHENKLEVVVATIAFGMGIDKLNVRRIIHYGW--PQSLEAYYQEAGRAGRDG--HLADCVLYANLSSMPTLLPSRRSEDQ 633 (774)
Q Consensus 558 F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~--p~s~~~y~Qr~GRaGR~G--~~g~~il~~~~~~~~~~~~~~~~~~~ 633 (774)
|++|++.+||+|.+++||+.+|+|+++|.=.- -.+-++.+|.+||+||.- -.|....| ..+ ....
T Consensus 351 fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FF-H~G----------~ska 419 (441)
T COG4098 351 FRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFF-HYG----------KSKA 419 (441)
T ss_pred HHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEE-ecc----------chHH
Confidence 99999999999999999999999998663221 257889999999999954 34555444 322 1234
Q ss_pred HHHHHHHHHHH
Q 004098 634 TKQAYRMLSDC 644 (774)
Q Consensus 634 ~~~~~~~l~~~ 644 (774)
+.++.+.+..|
T Consensus 420 M~~A~keIk~M 430 (441)
T COG4098 420 MKQARKEIKEM 430 (441)
T ss_pred HHHHHHHHHHH
Confidence 55666666666
No 104
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.92 E-value=7.3e-24 Score=213.30 Aligned_cols=183 Identities=20% Similarity=0.262 Sum_probs=146.8
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc--------cCCeEEEEccchHH
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL--------TGKVVVVISPLISL 225 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~--------~~~~~LVvsPt~~L 225 (774)
...+.+.+.+.|.+ +|+..|+++|.++++.+++|+|+++++|||+|||++|++|++. .++++||++|+++|
T Consensus 3 ~~~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L 81 (203)
T cd00268 3 ELGLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTREL 81 (203)
T ss_pred cCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHH
Confidence 34567778888885 7999999999999999999999999999999999999999873 34689999999999
Q ss_pred HHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccC
Q 004098 226 MHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKW 301 (774)
Q Consensus 226 ~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~ 301 (774)
+.|+...+.++ ++.+..+.++....... ....+.++|+|+||+.+..++. .....+.+++++|+||||.+.+.
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~T~~~l~~~l~--~~~~~~~~l~~lIvDE~h~~~~~ 158 (203)
T cd00268 82 ALQIAEVARKLGKHTNLKVVVIYGGTSIDKQI-RKLKRGPHIVVATPGRLLDLLE--RGKLDLSKVKYLVLDEADRMLDM 158 (203)
T ss_pred HHHHHHHHHHHhccCCceEEEEECCCCHHHHH-HHhcCCCCEEEEChHHHHHHHH--cCCCChhhCCEEEEeChHHhhcc
Confidence 99999998876 67778888877654433 3344578999999999988776 33355678999999999999866
Q ss_pred CCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcC
Q 004098 302 GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (774)
Q Consensus 302 g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~ 353 (774)
+ |...+..+.. .+ +...+++++|||+++.+...+...++
T Consensus 159 ~--~~~~~~~~~~---~l--------~~~~~~~~~SAT~~~~~~~~~~~~~~ 197 (203)
T cd00268 159 G--FEDQIREILK---LL--------PKDRQTLLFSATMPKEVRDLARKFLR 197 (203)
T ss_pred C--hHHHHHHHHH---hC--------CcccEEEEEeccCCHHHHHHHHHHCC
Confidence 5 6666666532 22 23789999999999877666655553
No 105
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.90 E-value=6.4e-23 Score=199.91 Aligned_cols=156 Identities=29% Similarity=0.418 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---c--CCeEEEEccchHHHHHHHHHHHhcC----CcEEEEcC
Q 004098 175 KNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---T--GKVVVVISPLISLMHDQCSKLSKHG----VTACFLGS 245 (774)
Q Consensus 175 r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~--~~~~LVvsPt~~L~~qq~~~l~~~g----i~~~~l~~ 245 (774)
||+|.++++.+++|+|+++.+|||+|||++|++|++. . ...+||++|+++|+.|+.+.+.+++ +++..+++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999999999864 2 3499999999999999999999863 57888888
Q ss_pred CCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccc
Q 004098 246 GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLK 325 (774)
Q Consensus 246 ~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~ 325 (774)
+............+.++|+|+||+++.+++.. ......++++|||||+|++..|+ |+..+..+........
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~--~~~~~~~~~~iViDE~h~l~~~~--~~~~~~~i~~~~~~~~----- 151 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQLLDLISN--GKINISRLSLIVIDEAHHLSDET--FRAMLKSILRRLKRFK----- 151 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHT--TSSTGTTESEEEEETHHHHHHTT--HHHHHHHHHHHSHTTT-----
T ss_pred cccccccccccccccccccccCcchhhccccc--cccccccceeeccCccccccccc--HHHHHHHHHHHhcCCC-----
Confidence 77755445555567789999999999887763 22245669999999999999885 7887777755543332
Q ss_pred cccCCCCEEEEeccCCHH
Q 004098 326 SLKFDIPLMALTATATIQ 343 (774)
Q Consensus 326 ~l~~~~~il~lTAT~~~~ 343 (774)
+.+++++|||++..
T Consensus 152 ----~~~~i~~SAT~~~~ 165 (169)
T PF00270_consen 152 ----NIQIILLSATLPSN 165 (169)
T ss_dssp ----TSEEEEEESSSTHH
T ss_pred ----CCcEEEEeeCCChh
Confidence 58899999999943
No 106
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=5e-21 Score=220.24 Aligned_cols=122 Identities=21% Similarity=0.196 Sum_probs=109.3
Q ss_pred CchhHhhhhccCC-CCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccC
Q 004098 497 NKPAERLSMLQEP-LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575 (774)
Q Consensus 497 ~k~~~ll~~L~~~-~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~G 575 (774)
.|...+++.+... ..+.|+||||+|+..++.|++.|...|+.+..+|+ .+.+|+..+..|..+...|+|||+++|||
T Consensus 582 eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRG 659 (1025)
T PRK12900 582 EKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRG 659 (1025)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCC
Confidence 4666777777543 24669999999999999999999999999999997 68899999999999999999999999999
Q ss_pred cccC---Ccc-----eEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 576 IDKL---NVR-----RIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 576 IDip---~V~-----~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
+||+ .|. +||++..|.|...|.|++|||||.|.+|.+++|++..|
T Consensus 660 tDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 660 TDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred CCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 9999 564 45999999999999999999999999999999998765
No 107
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.87 E-value=5.1e-20 Score=212.57 Aligned_cols=107 Identities=18% Similarity=0.293 Sum_probs=102.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeC--
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYG-- 588 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d-- 588 (774)
.+.++||||+|++.++.++++|.+.|+.+..+|+++++.+|.++++.|+.|++.|||||+++++|+|+|++++||++|
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---CCCCHHHHHHHhhccccCCCcceEEEEeeC
Q 004098 589 ---WPQSLEAYYQEAGRAGRDGHLADCVLYANL 618 (774)
Q Consensus 589 ---~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~ 618 (774)
.|.+..+|+||+|||||. ..|.+++|++.
T Consensus 521 ifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~ 552 (655)
T TIGR00631 521 KEGFLRSERSLIQTIGRAARN-VNGKVIMYADK 552 (655)
T ss_pred cccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcC
Confidence 799999999999999998 68999999873
No 108
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=2.1e-20 Score=198.00 Aligned_cols=351 Identities=17% Similarity=0.114 Sum_probs=240.8
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhh-----ccCCeEEEEccchHHHHHHH
Q 004098 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL-----LTGKVVVVISPLISLMHDQC 230 (774)
Q Consensus 156 ~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal-----~~~~~~LVvsPt~~L~~qq~ 230 (774)
.+-+.+.++++ ......+..+|.++|+.+-+|+++++.-.|.+||++||++.+. ......++++|+++|++++.
T Consensus 270 ~~~E~~~~~~~-~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~ 348 (1034)
T KOG4150|consen 270 DFWESIRSLLN-KNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGS 348 (1034)
T ss_pred hHHHHHHHHHh-cccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccC
Confidence 33445566666 4456789999999999999999999999999999999998764 34668899999999999987
Q ss_pred HHHHhc------CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHH--HHHHHHhcCccEEEEeccccccc-C
Q 004098 231 SKLSKH------GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKP--LQRLAESRGIALFAIDEVHCVSK-W 301 (774)
Q Consensus 231 ~~l~~~------gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~--~~~~~~~~~i~~iVIDEaH~l~~-~ 301 (774)
+.+.-. -..+.+-.++...+..+..+.+.+.+++|+.|.+.....-. +.-...+-...++++||+|-... .
T Consensus 349 ~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~ 428 (1034)
T KOG4150|consen 349 KGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPT 428 (1034)
T ss_pred CceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecch
Confidence 765432 12233334444444556667778899999999988643221 00011123456889999998764 4
Q ss_pred CCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCcc
Q 004098 302 GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381 (774)
Q Consensus 302 g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~ 381 (774)
|......+++|..+...|..+. +.+++-.+||....++. .....++..-..+.....-...-.+.++......
T Consensus 429 ~~~~~~~~R~L~~L~~~F~~~~------~~~~~~~~~~~K~~~~~-~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P 501 (1034)
T KOG4150|consen 429 KALAQDQLRALSDLIKGFEASI------NMGVYDGDTPYKDRTRL-RSELANLSELELVTIDGSPSSEKLFVLWNPSAPP 501 (1034)
T ss_pred hhHHHHHHHHHHHHHHHHHhhc------CcceEeCCCCcCCHHHH-HHHhcCCcceEEEEecCCCCccceEEEeCCCCCC
Confidence 5545778899999988886543 78888888888655443 2334455432222222221222223333211100
Q ss_pred chhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhh
Q 004098 382 RASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLE 461 (774)
Q Consensus 382 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 461 (774)
. .+.....++
T Consensus 502 ~---------------------------------------------------------------------~~~~~~~~i- 511 (1034)
T KOG4150|consen 502 T---------------------------------------------------------------------SKSEKSSKV- 511 (1034)
T ss_pred c---------------------------------------------------------------------chhhhhhHH-
Confidence 0 000000000
Q ss_pred cCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCC-CCCCcEEEEeCchHHHHHHHHHHHhC----C
Q 004098 462 NDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-LEDGLTIIYVPTRKETLSIAKYLCGF----G 536 (774)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~-~~~~~~IIF~~sr~~~~~l~~~L~~~----g 536 (774)
.+..+++.+. ..+-++|-||.+|+.|+-+....++. +
T Consensus 512 --------------------------------------~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~ 553 (1034)
T KOG4150|consen 512 --------------------------------------VEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETA 553 (1034)
T ss_pred --------------------------------------HHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhh
Confidence 0000000000 13458999999999999887765432 1
Q ss_pred ----CceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceE
Q 004098 537 ----VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC 612 (774)
Q Consensus 537 ----~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~ 612 (774)
-.+..|.||...++|+++..+.-.|++.-+|||++++.|||+...+.|++.++|.|+.++.|..|||||..+++.+
T Consensus 554 ~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLa 633 (1034)
T KOG4150|consen 554 PHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLA 633 (1034)
T ss_pred HHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceE
Confidence 1467899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EEEeeCCCCC
Q 004098 613 VLYANLSSMP 622 (774)
Q Consensus 613 il~~~~~~~~ 622 (774)
+.++....+.
T Consensus 634 vyva~~~PVD 643 (1034)
T KOG4150|consen 634 VYVAFLGPVD 643 (1034)
T ss_pred EEEEeccchh
Confidence 8776554433
No 109
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.85 E-value=6.3e-21 Score=209.94 Aligned_cols=417 Identities=15% Similarity=0.152 Sum_probs=251.0
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEecCCCchHH---HHHHhhh--ccCCeEEEEccchHHHHHHHHHHHhcC--CcEE
Q 004098 173 SLKNFQKEALSAWL----AHHDCLVLAATGSGKSL---CFQIPAL--LTGKVVVVISPLISLMHDQCSKLSKHG--VTAC 241 (774)
Q Consensus 173 ~~r~~Q~~ai~~il----~g~d~lv~apTGsGKTl---~~~lpal--~~~~~~LVvsPt~~L~~qq~~~l~~~g--i~~~ 241 (774)
++.+||.-.++|+. ++-+.|+...+|.|||. +|+.-.. -..+..|||||. +-+..|.+++.+|. +++.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPs-STleNWlrEf~kwCPsl~Ve 477 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPS-STLENWLREFAKWCPSLKVE 477 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecc-hhHHHHHHHHHHhCCceEEE
Confidence 48999999999975 35688999999999996 2322222 236889999997 77799999999996 5566
Q ss_pred EEcCCCChHHHHHHH-Hc--CCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHH
Q 004098 242 FLGSGQPDNKVEQKA-LR--GMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLREN 318 (774)
Q Consensus 242 ~l~~~~~~~~~~~~~-~~--~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~ 318 (774)
.++|.+..+...+.. .. .+++|+++|+..+..--. -+.++...+++++|.||+|.+.+.+ ..-|+.|..+.
T Consensus 478 ~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kd-DRsflk~~~~n~viyDEgHmLKN~~---SeRy~~LM~I~-- 551 (941)
T KOG0389|consen 478 PYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKD-DRSFLKNQKFNYVIYDEGHMLKNRT---SERYKHLMSIN-- 551 (941)
T ss_pred eccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChH-HHHHHHhccccEEEecchhhhhccc---hHHHHHhcccc--
Confidence 666666443332222 22 379999999987753222 2556667789999999999998766 44566664432
Q ss_pred hcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecC---Cccch---hhhHhHHHH
Q 004098 319 FGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK---TSSRA---SYKKDFCQL 392 (774)
Q Consensus 319 ~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~---~~~~~---~~~~~l~~l 392 (774)
.-..|+||+||-++...+++..|.+- -|.+|..+...-...+...... ..... .-....+.+
T Consensus 552 -----------An~RlLLTGTPLQNNL~ELiSLL~Fv-lP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~i 619 (941)
T KOG0389|consen 552 -----------ANFRLLLTGTPLQNNLKELISLLAFV-LPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTI 619 (941)
T ss_pred -----------ccceEEeeCCcccccHHHHHHHHHHH-hhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHh
Confidence 33579999999999999999988653 2333332221111111111110 00000 011223344
Q ss_pred HHHHHhhhcccccccccCCCcCCCcc--------CccCCCccccc----ccCC--------------------CCCCCCC
Q 004098 393 IDIYTKKKKTGEKEKSAIPQDLDDQS--------DTSSSSSMSEE----SRIS--------------------PNIGDGY 440 (774)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~----~~~~--------------------~~~~~~~ 440 (774)
+..|..++.+...-..+.++ ..-+. ...+....... ...+ +-+...+
T Consensus 620 m~PFILRR~K~qVL~~LPpK-~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~ 698 (941)
T KOG0389|consen 620 MKPFILRRLKSQVLKQLPPK-IQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSI 698 (941)
T ss_pred hhHHHHHHHHHHHHHhcCCc-cceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHh
Confidence 44444444333333332222 11100 00000000000 0000 0000111
Q ss_pred CCCccCCC-------CCCccchhhhhhhcC--CCc--ccccccccccCCCCCCCCCCccchhhc-cccCchhHhhhhccC
Q 004098 441 YDDEDVGN-------SPMGKEMSVEFLEND--SVD--DWDVACGEFYGHSPHRDRDTDRSFERT-DLLNKPAERLSMLQE 508 (774)
Q Consensus 441 ~~~~~~~~-------~~~~~~~~~~~l~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~ll~~L~~ 508 (774)
|.+..... .+.-.....+|+..+ ... +.+..|..|. +. ...++.... -.+.|...|-.+|.+
T Consensus 699 Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~----~~--~~f~L~d~~~mdSgK~r~L~~LLp~ 772 (941)
T KOG0389|consen 699 YTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFR----HL--SKFQLKDDLWMDSGKCRKLKELLPK 772 (941)
T ss_pred ccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcC----CC--cccccCCchhhhhhhHhHHHHHHHH
Confidence 21111100 000000001111110 000 1112222222 11 111122112 223455555555544
Q ss_pred CCC-CCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC--ceEEEEecccccCcccCCcceEE
Q 004098 509 PLE-DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK--LEVVVATIAFGMGIDKLNVRRII 585 (774)
Q Consensus 509 ~~~-~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~--~~vLVAT~a~~~GIDip~V~~VI 585 (774)
... +.+++||.+.....+.|.-+|...+++...+.|...-.+|+.++..|..++ +-+|++|.|+|-|||+...++||
T Consensus 773 ~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VI 852 (941)
T KOG0389|consen 773 IKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVI 852 (941)
T ss_pred HhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEE
Confidence 443 369999999999999999999999999999999999999999999999664 56899999999999999999999
Q ss_pred EeCCCCCHHHHHHHhhccccCCCcceEEEE
Q 004098 586 HYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (774)
Q Consensus 586 ~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~ 615 (774)
.||+.-|+-.-.|.-.||+|.|+...+.+|
T Consensus 853 ihD~dFNP~dD~QAEDRcHRvGQtkpVtV~ 882 (941)
T KOG0389|consen 853 IHDIDFNPYDDKQAEDRCHRVGQTKPVTVY 882 (941)
T ss_pred EeecCCCCcccchhHHHHHhhCCcceeEEE
Confidence 999999999999999999999999887765
No 110
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.84 E-value=1e-19 Score=210.83 Aligned_cols=308 Identities=19% Similarity=0.206 Sum_probs=202.5
Q ss_pred CHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhh------ccCCeEEEEccchHHHHHHHHHHHh-cCCc----EEEE
Q 004098 175 KNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL------LTGKVVVVISPLISLMHDQCSKLSK-HGVT----ACFL 243 (774)
Q Consensus 175 r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal------~~~~~~LVvsPt~~L~~qq~~~l~~-~gi~----~~~l 243 (774)
+....+.+.++-+++-+++.+|||+|||.. +|.. ..++.+.+.-|.|--+......+.+ +|-+ +.+-
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTq--lP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~ 129 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQ--LPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYS 129 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHH--HHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEE
Confidence 334556666777788899999999999973 4432 2356888889988556666666554 3332 3222
Q ss_pred cCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccc
Q 004098 244 GSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANN 323 (774)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~ 323 (774)
.-.. .......+|-|+|.+.|++.+. ....+..+++|||||||.-+= ..++ -|+.++..
T Consensus 130 iRfe-------~~~s~~Trik~mTdGiLlrei~---~D~~Ls~ys~vIiDEaHERSl-----~tDi-lLgllk~~----- 188 (845)
T COG1643 130 IRFE-------SKVSPRTRIKVMTDGILLREIQ---NDPLLSGYSVVIIDEAHERSL-----NTDI-LLGLLKDL----- 188 (845)
T ss_pred EEee-------ccCCCCceeEEeccHHHHHHHh---hCcccccCCEEEEcchhhhhH-----HHHH-HHHHHHHH-----
Confidence 2111 1123456999999999987665 222368899999999997541 1111 11112211
Q ss_pred cccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEE-ccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcc
Q 004098 324 LKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVL-TSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKT 402 (774)
Q Consensus 324 ~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~-~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 402 (774)
+...+++..+|.+|||+..+-.. +.++- .+.+.. ...++-.++|.-... ........+...++..
T Consensus 189 ~~~rr~DLKiIimSATld~~rfs---~~f~~--apvi~i~GR~fPVei~Y~~~~~---~d~~l~~ai~~~v~~~------ 254 (845)
T COG1643 189 LARRRDDLKLIIMSATLDAERFS---AYFGN--APVIEIEGRTYPVEIRYLPEAE---ADYILLDAIVAAVDIH------ 254 (845)
T ss_pred HhhcCCCceEEEEecccCHHHHH---HHcCC--CCEEEecCCccceEEEecCCCC---cchhHHHHHHHHHHHh------
Confidence 22334468899999999766544 34432 222222 222222333311110 0000111111111110
Q ss_pred cccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCC
Q 004098 403 GEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHR 482 (774)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 482 (774)
T Consensus 255 -------------------------------------------------------------------------------- 254 (845)
T COG1643 255 -------------------------------------------------------------------------------- 254 (845)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHH
Q 004098 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEF 558 (774)
Q Consensus 483 ~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F 558 (774)
.. ...|.+|||.+-..+.+.+++.|.+ ..+.+.++||.|+.+++.++++--
T Consensus 255 ------------------------~~-~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~ 309 (845)
T COG1643 255 ------------------------LR-EGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPA 309 (845)
T ss_pred ------------------------cc-CCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCC
Confidence 00 1467899999999999999999998 357899999999999999988877
Q ss_pred hcCCceEEEEecccccCcccCCcceEEEeCC------------------CCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 559 HENKLEVVVATIAFGMGIDKLNVRRIIHYGW------------------PQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 559 ~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~------------------p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
..|+-+|++||++++.+|.||+|++||.-+. |-|-.+.-||.|||||- .+|.|+=+|+..+
T Consensus 310 ~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~ 388 (845)
T COG1643 310 PGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEED 388 (845)
T ss_pred CCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHH
Confidence 7777779999999999999999999997665 44777889999999999 5899999998766
Q ss_pred CCccC
Q 004098 621 MPTLL 625 (774)
Q Consensus 621 ~~~~~ 625 (774)
...+.
T Consensus 389 ~~~~~ 393 (845)
T COG1643 389 FLAFP 393 (845)
T ss_pred HHhcc
Confidence 55443
No 111
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=1.7e-18 Score=194.43 Aligned_cols=416 Identities=17% Similarity=0.144 Sum_probs=250.1
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHh--
Q 004098 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK-- 235 (774)
Q Consensus 161 l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~-- 235 (774)
+.++.++.+|+ .|++.|.-+.-.+++|+ |+.|.||.|||+++.+|+++ .+..+.|++|+--|+.+-++++..
T Consensus 67 vREa~~R~lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 67 AREAAERTLGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred HHHHHHHHcCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 45566677888 69999999999998886 88999999999999999874 588899999999999998888876
Q ss_pred --cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHH-HHHHH-H---HHHHHhcCccEEEEecccccc-c-------
Q 004098 236 --HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI-RLIKP-L---QRLAESRGIALFAIDEVHCVS-K------- 300 (774)
Q Consensus 236 --~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~-~ll~~-~---~~~~~~~~i~~iVIDEaH~l~-~------- 300 (774)
+|+.+.++.++.+... .+... .++|+|+|...+. ++|.. + ........+.+.||||||.++ +
T Consensus 144 ~~LGLsvg~i~~~~~~~e-rr~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLi 220 (764)
T PRK12326 144 EALGLTVGWITEESTPEE-RRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLV 220 (764)
T ss_pred HhcCCEEEEECCCCCHHH-HHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCcee
Confidence 4899999988776543 22233 4699999988764 22221 1 112234668999999999874 1
Q ss_pred ---CCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCc--eE------------EEc
Q 004098 301 ---WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGT--KF------------VLT 363 (774)
Q Consensus 301 ---~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~--~~------------~~~ 363 (774)
.... ...|..+..+...+....--.+....+.+.||. .-.+.+.+.|+..+-. .. ...
T Consensus 221 ISg~~~~-~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe----~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~ 295 (764)
T PRK12326 221 LAGSTPG-EAPRGEIAELVRRLREGKDYEIDDDGRNVHLTD----KGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAH 295 (764)
T ss_pred eeCCCcc-hhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecH----HHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHH
Confidence 1111 146666666666554321111112233445553 3344444444332100 00 000
Q ss_pred cCCCCCcEEEEeecCC----------ccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCC
Q 004098 364 SFFRPNLRFSVKHSKT----------SSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRIS 433 (774)
Q Consensus 364 ~~~r~~l~~~v~~~~~----------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (774)
.++..+..|.|...+- .....|.+-+++.++.-..-. ..++....
T Consensus 296 ~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~-------------------------i~~e~~t~ 350 (764)
T PRK12326 296 ALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLE-------------------------TTETGEVL 350 (764)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCC-------------------------CCCCceee
Confidence 1122233343332110 001234445555544221100 00000000
Q ss_pred CC-CCCCCCCC--ccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCC
Q 004098 434 PN-IGDGYYDD--EDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL 510 (774)
Q Consensus 434 ~~-~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~ 510 (774)
.. -.+.+|.. ...|++.+......+|..-..++ ...+..+.|....+. ..........|...+++.+.+..
T Consensus 351 AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~-----Vv~IPtnkp~~R~d~-~d~iy~t~~~k~~Aii~ei~~~~ 424 (764)
T PRK12326 351 DTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLG-----VSVIPPNKPNIREDE-ADRVYATAAEKNDAIVEHIAEVH 424 (764)
T ss_pred ehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCc-----EEECCCCCCceeecC-CCceEeCHHHHHHHHHHHHHHHH
Confidence 00 00111111 23455555544444444322211 112222222221111 11112223346666666665543
Q ss_pred -CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccC----------
Q 004098 511 -EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKL---------- 579 (774)
Q Consensus 511 -~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip---------- 579 (774)
.+.|+||.+.|...++.++..|.+.|++...+++.-...|-.-+-+.=+.| .|.|||+++|||.||.
T Consensus 425 ~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMAGRGTDIkLg~~~~~~~~ 502 (764)
T PRK12326 425 ETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGKYG--AVTVSTQMAGRGTDIRLGGSDEADRD 502 (764)
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCCCC--cEEEEecCCCCccCeecCCCcccchH
Confidence 556999999999999999999999999999999975544433333333344 7899999999999986
Q ss_pred Cc-----ceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 580 NV-----RRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 580 ~V-----~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
.| -+||-...+.|..---|-.|||||.|.||.+.+|++..|
T Consensus 503 ~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 503 RVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred HHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 22 379999999999999999999999999999999988655
No 112
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=5e-21 Score=215.49 Aligned_cols=413 Identities=15% Similarity=0.163 Sum_probs=268.6
Q ss_pred CCCCHHHHHHHHHHHc----CCCEEEEecCCCchHH------HHHHhhhccCCeEEEEccchHHHHHHHHHHHhcCCcEE
Q 004098 172 SSLKNFQKEALSAWLA----HHDCLVLAATGSGKSL------CFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTAC 241 (774)
Q Consensus 172 ~~~r~~Q~~ai~~il~----g~d~lv~apTGsGKTl------~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~ 241 (774)
.++++||...+.|+.. +-|.|++..||.|||. +|++-.....+.-|||+|+--| -.|..++..|.-.+.
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL-~NW~~Ef~kWaPSv~ 471 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTL-VNWSSEFPKWAPSVQ 471 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEecccccc-CCchhhcccccccee
Confidence 4799999999999874 4478999999999996 4555556678899999998555 567888888865544
Q ss_pred EEcC-CCCh--HHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHH-
Q 004098 242 FLGS-GQPD--NKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRE- 317 (774)
Q Consensus 242 ~l~~-~~~~--~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~- 317 (774)
.+.. |.+. .........++++|+++|.|.+..- ..++..-+|.++||||.|+|.. ...+|.....
T Consensus 472 ~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikd----k~lLsKI~W~yMIIDEGHRmKN-------a~~KLt~~L~t 540 (1157)
T KOG0386|consen 472 KIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKD----KALLSKISWKYMIIDEGHRMKN-------AICKLTDTLNT 540 (1157)
T ss_pred eeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCC----HHHHhccCCcceeecccccccc-------hhhHHHHHhhc
Confidence 4433 3332 2234455568999999999987752 4455566799999999999964 3344443333
Q ss_pred HhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEc------cCCCCCcEEE--EeecCCccchhhhHhH
Q 004098 318 NFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT------SFFRPNLRFS--VKHSKTSSRASYKKDF 389 (774)
Q Consensus 318 ~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~------~~~r~~l~~~--v~~~~~~~~~~~~~~l 389 (774)
.+. ....++||+||.++...+++..|++.- +.++.+ .|+.|--..- +.- ...........+
T Consensus 541 ~y~---------~q~RLLLTGTPLQN~LpELWaLLNFlL-P~IFnS~~~FeqWFN~PFantGek~eL-teEEtlLIIrRL 609 (1157)
T KOG0386|consen 541 HYR---------AQRRLLLTGTPLQNNLPELWALLNFLL-PNIFNSCKAFEQWFNQPFANTGEKVEL-TEEETLLIIRRL 609 (1157)
T ss_pred ccc---------chhhhhhcCChhhhccHHHHHHHHHhc-cchhhhHhHHHHHhhhhhhhcCCcccc-cchHHHHHHHHH
Confidence 222 456899999999999999999998763 344332 2333311111 110 011112445667
Q ss_pred HHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccc
Q 004098 390 CQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWD 469 (774)
Q Consensus 390 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 469 (774)
++++..+..++.+.+....+ |..+..+......+-.........+... .+.+. .........+. +.+.+.+
T Consensus 610 HkVLRPFlLRRlKkeVE~~L-PdKve~viKC~mSalQq~lY~~m~~~g~-l~~d~--~~g~~g~k~L~-----N~imqLR 680 (1157)
T KOG0386|consen 610 HKVLRPFLLRRLKKEVEQEL-PDKVEDVIKCDMSALQQSLYKQMQNKGQ-LLKDT--AKGKKGYKPLF-----NTIMQLR 680 (1157)
T ss_pred HHhhhHHHHHhhhHHHhhhC-chhhhHhhheehhhhhHhhhHHHHhCCC-CCcCc--hhccccchhhh-----hHhHHHH
Confidence 77777776665554444433 2222222111111100000000000000 00000 11111111122 2345667
Q ss_pred cccccccCCCCCCCCCCccchh-hccccCchhHhhhhccCCC--CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCC
Q 004098 470 VACGEFYGHSPHRDRDTDRSFE-RTDLLNKPAERLSMLQEPL--EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASL 546 (774)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~ll~~L~~~~--~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l 546 (774)
..|++.+.....+......... .+.-.+.+..+++.+.-.+ .+++++.||....-.+.+..+|.-.+++...+.|..
T Consensus 681 KiCNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~T 760 (1157)
T KOG0386|consen 681 KLCNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQT 760 (1157)
T ss_pred HhcCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCc
Confidence 7888888774432222211111 2222233344444433322 467999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcC---CceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEe
Q 004098 547 PKSQLRRVHTEFHEN---KLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616 (774)
Q Consensus 547 ~~~~R~~~~~~F~~g---~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~ 616 (774)
..++|-..++.|..- -+.+|.+|.+.|.|+|+...+.||.||..|++..+.|+..||+|.|+..++-++.
T Consensus 761 K~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 761 KVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred chhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 999999999999843 4568999999999999999999999999999999999999999999999887764
No 113
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.84 E-value=2.8e-19 Score=208.91 Aligned_cols=150 Identities=15% Similarity=0.143 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHHHc----------CCCEEEEecCCCchHHHHHHhhh-----ccCCeEEEEccchHHHHHHHHHHHhcCC
Q 004098 174 LKNFQKEALSAWLA----------HHDCLVLAATGSGKSLCFQIPAL-----LTGKVVVVISPLISLMHDQCSKLSKHGV 238 (774)
Q Consensus 174 ~r~~Q~~ai~~il~----------g~d~lv~apTGsGKTl~~~lpal-----~~~~~~LVvsPt~~L~~qq~~~l~~~gi 238 (774)
+|++|..|+..++. .+..++++|||||||++.+..+. ...+++|||+|+++|..|+.+.+.+++.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC
Confidence 78899999988752 25799999999999987654432 2467999999999999999999999875
Q ss_pred cEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCc-cEEEEecccccccCCCCcHHHHHHHHHHHH
Q 004098 239 TACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGI-ALFAIDEVHCVSKWGHDFRPDYRRLSVLRE 317 (774)
Q Consensus 239 ~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i-~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~ 317 (774)
.... ...+.......+......|+|+|.+++.+.+...........- .+||+||||+... | .+.. .++.
T Consensus 319 ~~~~--~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~-~-----~~~~--~l~~ 388 (667)
T TIGR00348 319 DCAE--RIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY-G-----ELAK--NLKK 388 (667)
T ss_pred CCCc--ccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc-h-----HHHH--HHHh
Confidence 3211 1112222223333445689999999997643321111111111 2899999998741 2 1221 2334
Q ss_pred HhcccccccccCCCCEEEEeccCCH
Q 004098 318 NFGANNLKSLKFDIPLMALTATATI 342 (774)
Q Consensus 318 ~~~~~~~~~l~~~~~il~lTAT~~~ 342 (774)
.|+ +..+++|||||..
T Consensus 389 ~~p---------~a~~lGfTaTP~~ 404 (667)
T TIGR00348 389 ALK---------NASFFGFTGTPIF 404 (667)
T ss_pred hCC---------CCcEEEEeCCCcc
Confidence 454 6789999999954
No 114
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.84 E-value=1.3e-18 Score=202.68 Aligned_cols=107 Identities=18% Similarity=0.270 Sum_probs=101.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCC-
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW- 589 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~- 589 (774)
.+.++||||+|++.++.|++.|...|+++..+||++++.+|..+++.|+.|++.|||||+++++|+|+|++++||++|.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred ----CCCHHHHHHHhhccccCCCcceEEEEeeC
Q 004098 590 ----PQSLEAYYQEAGRAGRDGHLADCVLYANL 618 (774)
Q Consensus 590 ----p~s~~~y~Qr~GRaGR~G~~g~~il~~~~ 618 (774)
|.+.++|+||+|||||. ..|.|++|++.
T Consensus 525 ifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~ 556 (652)
T PRK05298 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (652)
T ss_pred ccccCCCHHHHHHHhccccCC-CCCEEEEEecC
Confidence 78999999999999996 78999999873
No 115
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.83 E-value=6.3e-19 Score=199.71 Aligned_cols=297 Identities=20% Similarity=0.304 Sum_probs=195.5
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhh---ccCCeEEEEccchHHHHHHHHHHHhc
Q 004098 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKH 236 (774)
Q Consensus 160 ~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal---~~~~~~LVvsPt~~L~~qq~~~l~~~ 236 (774)
+..+.+++..|+ .|+..|+-....++.|+..-++||||.|||.--++.++ .+++++++|+||..|+.|.++.+.++
T Consensus 70 ~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~ 148 (1187)
T COG1110 70 EFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKF 148 (1187)
T ss_pred HHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHH
Confidence 445566677788 79999999999999999999999999999975444444 35789999999999999999999987
Q ss_pred C-----CcEEE-EcCCCCh---HHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCC---
Q 004098 237 G-----VTACF-LGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD--- 304 (774)
Q Consensus 237 g-----i~~~~-l~~~~~~---~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~--- 304 (774)
. ..+-. +++..+. .....++.+|+++|+|+|.+-|..-.+.+ ...++++|++|.+|.++.-+.+
T Consensus 149 ~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L----~~~kFdfifVDDVDA~LkaskNvDr 224 (1187)
T COG1110 149 AEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL----SKLKFDFIFVDDVDAILKASKNVDR 224 (1187)
T ss_pred HhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh----cccCCCEEEEccHHHHHhccccHHH
Confidence 3 33333 3443333 33455677899999999999776433322 2246999999999987643321
Q ss_pred ------cHHH-H---HHHHHHHHHhccc-ccc---------------cccCCCCEEEEeccCCHHH-HHHHH-HHcCCCC
Q 004098 305 ------FRPD-Y---RRLSVLRENFGAN-NLK---------------SLKFDIPLMALTATATIQV-REDIL-KSLHMSK 356 (774)
Q Consensus 305 ------fr~~-~---~~l~~l~~~~~~~-~~~---------------~l~~~~~il~lTAT~~~~~-~~~i~-~~L~~~~ 356 (774)
|..+ + ..+..++..+..+ ... .-.....++..|||..+.. +..+. ..|++..
T Consensus 225 iL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFev 304 (1187)
T COG1110 225 LLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEV 304 (1187)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCcc
Confidence 2221 0 1111122221100 000 0011355778888875532 33333 3334321
Q ss_pred CceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCC
Q 004098 357 GTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNI 436 (774)
Q Consensus 357 ~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (774)
.. .. .-++++++.+.
T Consensus 305 G~---~~-----------------------~~LRNIvD~y~--------------------------------------- 319 (1187)
T COG1110 305 GS---GG-----------------------EGLRNIVDIYV--------------------------------------- 319 (1187)
T ss_pred Cc---cc-----------------------hhhhheeeeec---------------------------------------
Confidence 00 00 00111111000
Q ss_pred CCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEE
Q 004098 437 GDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTI 516 (774)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~I 516 (774)
..+.....++++++. +.-+|
T Consensus 320 ----------------------------------------------------------~~~~~e~~~elvk~l--G~GgL 339 (1187)
T COG1110 320 ----------------------------------------------------------ESESLEKVVELVKKL--GDGGL 339 (1187)
T ss_pred ----------------------------------------------------------cCccHHHHHHHHHHh--CCCeE
Confidence 001222333333333 23589
Q ss_pred EEeCc---hHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEe----cccccCcccCC-cceEEEeC
Q 004098 517 IYVPT---RKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVAT----IAFGMGIDKLN-VRRIIHYG 588 (774)
Q Consensus 517 IF~~s---r~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT----~a~~~GIDip~-V~~VI~~d 588 (774)
||++. ++.+++|+++|+..|+++..+|++ .+..++.|..|++++||.. .++-||||+|. ++++|.|+
T Consensus 340 IfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~G 414 (1187)
T COG1110 340 IFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYG 414 (1187)
T ss_pred EEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEec
Confidence 99999 999999999999999999999983 3788999999999999987 57899999997 79999999
Q ss_pred CCC
Q 004098 589 WPQ 591 (774)
Q Consensus 589 ~p~ 591 (774)
.|+
T Consensus 415 vPk 417 (1187)
T COG1110 415 VPK 417 (1187)
T ss_pred CCc
Confidence 993
No 116
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.83 E-value=2.4e-19 Score=200.76 Aligned_cols=150 Identities=19% Similarity=0.258 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCCchHHH--HHHhhhcc---CCeEEEEccchHHHHHHHHHHHh-cCC----cEEE
Q 004098 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLC--FQIPALLT---GKVVVVISPLISLMHDQCSKLSK-HGV----TACF 242 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~--~~lpal~~---~~~~LVvsPt~~L~~qq~~~l~~-~gi----~~~~ 242 (774)
.|-.+|.+.+..+-.++.++++|||.+|||++ |.+-.+++ .+++|+++|+++|++|....... +.- +-+.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~s 590 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVS 590 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchh
Confidence 47789999999999999999999999999986 55666654 68999999999999998877765 311 1122
Q ss_pred EcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHH-HHHHHHhcCccEEEEeccccccc--CCCCcHHHHHHHHHHHHHh
Q 004098 243 LGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKP-LQRLAESRGIALFAIDEVHCVSK--WGHDFRPDYRRLSVLRENF 319 (774)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~-~~~~~~~~~i~~iVIDEaH~l~~--~g~~fr~~~~~l~~l~~~~ 319 (774)
+.+....+ -++-.-.|+|+|+-||.+..++-. -...-.-.+++++|+||+|++.. .|+ ++..+..+.
T Consensus 591 l~g~ltqE---Ysinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l-~~Eqll~li------ 660 (1330)
T KOG0949|consen 591 LLGDLTQE---YSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGL-LWEQLLLLI------ 660 (1330)
T ss_pred hHhhhhHH---hcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccch-HHHHHHHhc------
Confidence 22222211 111112589999999999876543 11222346799999999999974 332 333333331
Q ss_pred cccccccccCCCCEEEEeccCCH
Q 004098 320 GANNLKSLKFDIPLMALTATATI 342 (774)
Q Consensus 320 ~~~~~~~l~~~~~il~lTAT~~~ 342 (774)
..|+|+||||..+
T Consensus 661 ----------~CP~L~LSATigN 673 (1330)
T KOG0949|consen 661 ----------PCPFLVLSATIGN 673 (1330)
T ss_pred ----------CCCeeEEecccCC
Confidence 6899999999854
No 117
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.82 E-value=3.5e-19 Score=202.08 Aligned_cols=410 Identities=14% Similarity=0.084 Sum_probs=224.0
Q ss_pred CCCHHHHHHHHHHHc---CC-------CEEEEecCCCchHHHH--HHhhhc---cC-----CeEEEEccchHHHHHHHHH
Q 004098 173 SLKNFQKEALSAWLA---HH-------DCLVLAATGSGKSLCF--QIPALL---TG-----KVVVVISPLISLMHDQCSK 232 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~---g~-------d~lv~apTGsGKTl~~--~lpal~---~~-----~~~LVvsPt~~L~~qq~~~ 232 (774)
.++|+|++++.-+-+ |. -+|+.-.+|+|||+-. .+..++ .. .+.|||+| .+|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc-HHHHHHHHHH
Confidence 589999999987653 32 2666779999999743 233333 34 78999999 5999999999
Q ss_pred HHhcCC----cEEEEcCCCChH-HHHHHHH-----cCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCC
Q 004098 233 LSKHGV----TACFLGSGQPDN-KVEQKAL-----RGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWG 302 (774)
Q Consensus 233 l~~~gi----~~~~l~~~~~~~-~~~~~~~-----~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g 302 (774)
+.+|.+ ....+++..... .....++ .-..-|++.+.|++.+... .+....++++|+||.|++-..-
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~----~il~~~~glLVcDEGHrlkN~~ 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR----KILLIRPGLLVCDEGHRLKNSD 392 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH----HHhcCCCCeEEECCCCCccchh
Confidence 999744 344444444321 1111111 2235789999998875444 3345679999999999986533
Q ss_pred CCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccc
Q 004098 303 HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382 (774)
Q Consensus 303 ~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~ 382 (774)
.-++..+.+| . ....|+||+||-++...+++..|++-.+...-.....+.+....+........
T Consensus 393 s~~~kaL~~l-------~---------t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~ 456 (776)
T KOG0390|consen 393 SLTLKALSSL-------K---------TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADA 456 (776)
T ss_pred hHHHHHHHhc-------C---------CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCc
Confidence 2233333333 1 45589999999999999999999876433222222222222222222111100
Q ss_pred -------hhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccC---CCCCCc
Q 004098 383 -------ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDV---GNSPMG 452 (774)
Q Consensus 383 -------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 452 (774)
..-..++..++..+.-.+.. .++.+.+....+....... +..+...|..... .....+
T Consensus 457 s~e~~~~~~rl~eL~~~t~~fi~rrt~-----~il~k~LP~k~e~vv~~n~-------t~~Q~~~~~~l~~~~~~~~~~~ 524 (776)
T KOG0390|consen 457 SEEDREREERLQELRELTNKFILRRTG-----DILLKYLPGKYEYVVFCNP-------TPIQKELYKKLLDSMKMRTLKG 524 (776)
T ss_pred chhhhhhHHHHHHHHHHHHhheeeccc-----chhhhhCCCceeEEEEeCC-------cHHHHHHHHHHHHHHHhhhhhc
Confidence 00122334444333322211 2222222221111000000 0000000000000 000000
Q ss_pred -cchhhhhhhcCCCcccccccccccCCCCCCCCCC-----c---cchhhccccCchhHhhhhccCCCCC--CcEEEEeCc
Q 004098 453 -KEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDT-----D---RSFERTDLLNKPAERLSMLQEPLED--GLTIIYVPT 521 (774)
Q Consensus 453 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~k~~~ll~~L~~~~~~--~~~IIF~~s 521 (774)
......+|..-....+.+.+.+..........+. . ..........+...++.+|...... ..+.+..+-
T Consensus 525 ~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny 604 (776)
T KOG0390|consen 525 YALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNY 604 (776)
T ss_pred chhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccH
Confidence 0000111111111111111111111100000000 0 0000011123344444444222111 123333344
Q ss_pred hHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC---CceEEEEecccccCcccCCcceEEEeCCCCCHHHHHH
Q 004098 522 RKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHEN---KLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQ 598 (774)
Q Consensus 522 r~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g---~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Q 598 (774)
+...+.+...++-+|+.+..+||.|+..+|+.+++.|.+- ..-+|.+|-|+|.||++-..+.||.||.+||+..-.|
T Consensus 605 ~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~Q 684 (776)
T KOG0390|consen 605 TQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQ 684 (776)
T ss_pred HHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHH
Confidence 4455555555555799999999999999999999999954 3558888999999999999999999999999999999
Q ss_pred HhhccccCCCcceEEEE
Q 004098 599 EAGRAGRDGHLADCVLY 615 (774)
Q Consensus 599 r~GRaGR~G~~g~~il~ 615 (774)
.++||-|+||.-.|++|
T Consensus 685 AmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 685 AMARAWRDGQKKPVYIY 701 (776)
T ss_pred HHHHhccCCCcceEEEE
Confidence 99999999999999987
No 118
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.82 E-value=1.9e-18 Score=197.49 Aligned_cols=372 Identities=19% Similarity=0.207 Sum_probs=229.2
Q ss_pred CCCHHHHHHHHHHHcC----CCEEEEecCCCchHHHHHHh---hhccCCeEEEEccchHHHHHHHHHHHh-cCCcEEEEc
Q 004098 173 SLKNFQKEALSAWLAH----HDCLVLAATGSGKSLCFQIP---ALLTGKVVVVISPLISLMHDQCSKLSK-HGVTACFLG 244 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g----~d~lv~apTGsGKTl~~~lp---al~~~~~~LVvsPt~~L~~qq~~~l~~-~gi~~~~l~ 244 (774)
.+.+-|..|+..+... .-.++.+.||||||.+|+=. +|..++.+||++|-++|-.|..+.|+. ||.++..++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlH 277 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLH 277 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhc
Confidence 5788899999998765 57899999999999998633 356788999999999999999999987 799999999
Q ss_pred CCCChHH---HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc-CCCCcHHHHHHHHHHHHHhc
Q 004098 245 SGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK-WGHDFRPDYRRLSVLRENFG 320 (774)
Q Consensus 245 ~~~~~~~---~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~-~g~~fr~~~~~l~~l~~~~~ 320 (774)
++.++.+ .+.+...|..+|+|+|---+ +..+.++.+|||||=|--+- .-...+...+.+..++....
T Consensus 278 S~Ls~~er~~~W~~~~~G~~~vVIGtRSAl---------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~ 348 (730)
T COG1198 278 SGLSPGERYRVWRRARRGEARVVIGTRSAL---------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKE 348 (730)
T ss_pred ccCChHHHHHHHHHHhcCCceEEEEechhh---------cCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHh
Confidence 9988754 44555678999999995522 34567899999999998752 11235677788888887766
Q ss_pred ccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCC---CCCcEEEE-eecCCccchhhhHhHHHHHHHH
Q 004098 321 ANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFF---RPNLRFSV-KHSKTSSRASYKKDFCQLIDIY 396 (774)
Q Consensus 321 ~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~---r~~l~~~v-~~~~~~~~~~~~~~l~~l~~~~ 396 (774)
+.|+++-||||+-+....+..- .-....+...+. -|++.+.- ..........+...+.+.+..-
T Consensus 349 ---------~~pvvLgSATPSLES~~~~~~g---~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~ 416 (730)
T COG1198 349 ---------NAPVVLGSATPSLESYANAESG---KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKT 416 (730)
T ss_pred ---------CCCEEEecCCCCHHHHHhhhcC---ceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHH
Confidence 8999999999998777655221 001111222222 22222221 1111111111333333332211
Q ss_pred HhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCc--cccccccc
Q 004098 397 TKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVD--DWDVACGE 474 (774)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~ 474 (774)
.. .. .+.++ |+...+-. -....|++
T Consensus 417 l~---~g--eQ~ll------------------------------------------------flnRRGys~~l~C~~Cg~ 443 (730)
T COG1198 417 LE---RG--EQVLL------------------------------------------------FLNRRGYAPLLLCRDCGY 443 (730)
T ss_pred Hh---cC--CeEEE------------------------------------------------EEccCCccceeecccCCC
Confidence 11 11 11110 01000000 00112333
Q ss_pred ccCCCCCCCCCCccchhhccccCchhHhhhhccCCC-C-CCcEEEEeCchHHHHHHHHHHHhC--CCceEEecCCCCHHH
Q 004098 475 FYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-E-DGLTIIYVPTRKETLSIAKYLCGF--GVKAAAYNASLPKSQ 550 (774)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~-~-~~~~IIF~~sr~~~~~l~~~L~~~--g~~~~~~h~~l~~~~ 550 (774)
......|....+.......-....-..- ..+-... . ++..|+++-. .++.+++.|... +.++..+.++.....
T Consensus 444 v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~-~~~p~~Cp~Cgs~~L~~~G~--GterieeeL~~~FP~~rv~r~d~Dtt~~k 520 (730)
T COG1198 444 IAECPNCDSPLTLHKATGQLRCHYCGYQ-EPIPQSCPECGSEHLRAVGP--GTERIEEELKRLFPGARIIRIDSDTTRRK 520 (730)
T ss_pred cccCCCCCcceEEecCCCeeEeCCCCCC-CCCCCCCCCCCCCeeEEecc--cHHHHHHHHHHHCCCCcEEEEccccccch
Confidence 3333333221111111000000000000 0000000 1 1235777653 456666666553 778888988776543
Q ss_pred --HHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCC------------CHHHHHHHhhccccCCCcceEEEEe
Q 004098 551 --LRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ------------SLEAYYQEAGRAGRDGHLADCVLYA 616 (774)
Q Consensus 551 --R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~------------s~~~y~Qr~GRaGR~G~~g~~il~~ 616 (774)
-+..+..|.+|+.+|||.|.+++-|.|+|+|.+|...|... ...-+.|-+|||||.+.+|.+++=.
T Consensus 521 ~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT 600 (730)
T COG1198 521 GALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQT 600 (730)
T ss_pred hhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEe
Confidence 57788999999999999999999999999999987666532 3556789999999999999998865
Q ss_pred eCCCC
Q 004098 617 NLSSM 621 (774)
Q Consensus 617 ~~~~~ 621 (774)
-..+.
T Consensus 601 ~~P~h 605 (730)
T COG1198 601 YNPDH 605 (730)
T ss_pred CCCCc
Confidence 44443
No 119
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.82 E-value=2.5e-18 Score=182.71 Aligned_cols=106 Identities=19% Similarity=0.290 Sum_probs=100.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCC-
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW- 589 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~- 589 (774)
.+.+++|-+-|++.++.|.+||.+.|+++.++|++...-+|.+++.+.+.|.++|||.-+.+-+|||+|.|.+|..+|.
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDAD 524 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 524 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecC
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ----CCCHHHHHHHhhccccCCCcceEEEEee
Q 004098 590 ----PQSLEAYYQEAGRAGRDGHLADCVLYAN 617 (774)
Q Consensus 590 ----p~s~~~y~Qr~GRaGR~G~~g~~il~~~ 617 (774)
..|-.+.+|-+|||+|. -.|.+++|.+
T Consensus 525 KeGFLRse~SLIQtIGRAARN-~~GkvIlYAD 555 (663)
T COG0556 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYAD 555 (663)
T ss_pred ccccccccchHHHHHHHHhhc-cCCeEEEEch
Confidence 46899999999999998 5799999975
No 120
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.82 E-value=1.3e-18 Score=205.56 Aligned_cols=312 Identities=19% Similarity=0.190 Sum_probs=202.1
Q ss_pred CCCHHHHHHHHHHHc---CC-CEEEEecCCCchHHHHHHhhhc-------cCCeEEEEccchHHHHHHHHHHHhcC-Cc-
Q 004098 173 SLKNFQKEALSAWLA---HH-DCLVLAATGSGKSLCFQIPALL-------TGKVVVVISPLISLMHDQCSKLSKHG-VT- 239 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~---g~-d~lv~apTGsGKTl~~~lpal~-------~~~~~LVvsPt~~L~~qq~~~l~~~g-i~- 239 (774)
..++.|..++..++. .. .+++.||||+|||.+.+++++. ...+++.+.|++++++++++.++... ..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 348899999999885 34 7889999999999999988863 26799999999999999999999742 11
Q ss_pred -EEE-EcCCCChHHHHHH-------------HHcCCceEEEEChHHHHHHHHH---HHHHHHhcCccEEEEecccccccC
Q 004098 240 -ACF-LGSGQPDNKVEQK-------------ALRGMYSIIYVCPETVIRLIKP---LQRLAESRGIALFAIDEVHCVSKW 301 (774)
Q Consensus 240 -~~~-l~~~~~~~~~~~~-------------~~~~~~~Ilv~TPe~l~~ll~~---~~~~~~~~~i~~iVIDEaH~l~~~ 301 (774)
... +++.......... ....-+.+.++||-........ +.. +..-..+++|+||+|.+-+.
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEF-LALLLTSLVILDEVHLYADE 353 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHH-HHHHHhhchhhccHHhhccc
Confidence 111 2332222110000 0111235556666555432110 111 22233589999999998764
Q ss_pred CCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEcc----CCCCCcEEEEeec
Q 004098 302 GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTS----FFRPNLRFSVKHS 377 (774)
Q Consensus 302 g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~----~~r~~l~~~v~~~ 377 (774)
. -...+..+......+ +.++|++|||+|+...+.+...++-..... .... .+.+.+......
T Consensus 354 ~--~~~~l~~~i~~l~~~----------g~~ill~SATlP~~~~~~l~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~- 419 (733)
T COG1203 354 T--MLAALLALLEALAEA----------GVPVLLMSATLPPFLKEKLKKALGKGREVV-ENAKFCPKEDEPGLKRKERV- 419 (733)
T ss_pred c--hHHHHHHHHHHHHhC----------CCCEEEEecCCCHHHHHHHHHHHhccccee-ccccccccccccccccccch-
Confidence 2 123333333333322 799999999999999998888876432111 1001 011110000000
Q ss_pred CCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhh
Q 004098 378 KTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSV 457 (774)
Q Consensus 378 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (774)
.+
T Consensus 420 -------------~~----------------------------------------------------------------- 421 (733)
T COG1203 420 -------------DV----------------------------------------------------------------- 421 (733)
T ss_pred -------------hh-----------------------------------------------------------------
Confidence 00
Q ss_pred hhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhh-hccCCCCCCcEEEEeCchHHHHHHHHHHHhCC
Q 004098 458 EFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLS-MLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG 536 (774)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~-~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g 536 (774)
.... . ..... .......+.+++|-|||++.|.++++.|+..+
T Consensus 422 --~~~~----------------------------------~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~ 464 (733)
T COG1203 422 --EDGP----------------------------------Q-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKG 464 (733)
T ss_pred --hhhh----------------------------------h-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcC
Confidence 0000 0 00000 01111245699999999999999999999988
Q ss_pred CceEEecCCCCHHHHHHHHHHH----hcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCC--Ccc
Q 004098 537 VKAAAYNASLPKSQLRRVHTEF----HENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG--HLA 610 (774)
Q Consensus 537 ~~~~~~h~~l~~~~R~~~~~~F----~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G--~~g 610 (774)
.++..+||.+...+|.+.++++ +.+...|+|||.+.+.|+|+. .+++|- -+..+.+.+||.||++|.| ..|
T Consensus 465 ~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~ 541 (733)
T COG1203 465 PKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENG 541 (733)
T ss_pred CCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee--cCCCHHHHHHHHHHHhhcccccCC
Confidence 7899999999999998888754 467889999999999999983 665554 3556999999999999999 677
Q ss_pred eEEEEee
Q 004098 611 DCVLYAN 617 (774)
Q Consensus 611 ~~il~~~ 617 (774)
..+++..
T Consensus 542 ~~~v~~~ 548 (733)
T COG1203 542 KIYVYND 548 (733)
T ss_pred ceeEeec
Confidence 7777754
No 121
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.82 E-value=2.2e-19 Score=205.06 Aligned_cols=412 Identities=15% Similarity=0.120 Sum_probs=243.5
Q ss_pred CCCHHHHHHHHHHH--c--CCCEEEEecCCCchHHHHH-Hhhh--c-c--------CCeEEEEccchHHHHHHHHHHHhc
Q 004098 173 SLKNFQKEALSAWL--A--HHDCLVLAATGSGKSLCFQ-IPAL--L-T--------GKVVVVISPLISLMHDQCSKLSKH 236 (774)
Q Consensus 173 ~~r~~Q~~ai~~il--~--g~d~lv~apTGsGKTl~~~-lpal--~-~--------~~~~LVvsPt~~L~~qq~~~l~~~ 236 (774)
.+|.||++.++|+. + +=+.|++..+|.||||-.+ +.|. . + ....|||||. .|.-.|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 46889999999964 2 4588999999999998432 2221 1 1 3359999995 9999999999997
Q ss_pred C--CcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHH
Q 004098 237 G--VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSV 314 (774)
Q Consensus 237 g--i~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~ 314 (774)
. .++... .|.+.....-+-.-+..+|+|++++.+.+....+ ....|.|+|+||-|-|.+-. ...+..+..
T Consensus 1054 ~pfL~v~~y-vg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l----~~~~wNYcVLDEGHVikN~k---tkl~kavkq 1125 (1549)
T KOG0392|consen 1054 FPFLKVLQY-VGPPAERRELRDQYKNANIIVTSYDVVRNDVDYL----IKIDWNYCVLDEGHVIKNSK---TKLTKAVKQ 1125 (1549)
T ss_pred cchhhhhhh-cCChHHHHHHHhhccccceEEeeHHHHHHHHHHH----HhcccceEEecCcceecchH---HHHHHHHHH
Confidence 4 233333 3333322222222334699999999987655533 23569999999999885421 223333333
Q ss_pred HHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCC-----CCceEEEccCCCCCcEEEEeec---CCccchhhh
Q 004098 315 LRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMS-----KGTKFVLTSFFRPNLRFSVKHS---KTSSRASYK 386 (774)
Q Consensus 315 l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~-----~~~~~~~~~~~r~~l~~~v~~~---~~~~~~~~~ 386 (774)
++ .-..+.||+||-++...+++..+.+. .....|...|.+|-+.-.-... +......-.
T Consensus 1126 L~-------------a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAl 1192 (1549)
T KOG0392|consen 1126 LR-------------ANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLAL 1192 (1549)
T ss_pred Hh-------------hcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHH
Confidence 33 34578999999999999999876433 1223344555555333211111 011111233
Q ss_pred HhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCC-----CCccchhhhhhh
Q 004098 387 KDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNS-----PMGKEMSVEFLE 461 (774)
Q Consensus 387 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~ 461 (774)
+.++..+-.+..++.+.+.-..+.++...+..=.-...+..--..+........-...+.+.. +...-...+|+.
T Consensus 1193 eaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlr 1272 (1549)
T KOG0392|consen 1193 EALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLR 1272 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHH
Confidence 445555555555555545544444444333100000000000000000000000000011110 111112334443
Q ss_pred cCCCcccccccccccCCCCCCCCCC-----------ccchhhccccCchhHhhhhccCCC---------------CCCcE
Q 004098 462 NDSVDDWDVACGEFYGHSPHRDRDT-----------DRSFERTDLLNKPAERLSMLQEPL---------------EDGLT 515 (774)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~k~~~ll~~L~~~~---------------~~~~~ 515 (774)
. .|.+...-... .++. .....-..-.+|...+-++|.+.. ..+++
T Consensus 1273 K--------LcnHpaLvlt~-~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRi 1343 (1549)
T KOG0392|consen 1273 K--------LCNHPALVLTP-VHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRI 1343 (1549)
T ss_pred H--------hcCCcceeeCC-CcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhcccee
Confidence 2 33332211100 0000 000000122345555555554432 23589
Q ss_pred EEEeCchHHHHHHHHHHHhC---CCceEEecCCCCHHHHHHHHHHHhcC-CceEE-EEecccccCcccCCcceEEEeCCC
Q 004098 516 IIYVPTRKETLSIAKYLCGF---GVKAAAYNASLPKSQLRRVHTEFHEN-KLEVV-VATIAFGMGIDKLNVRRIIHYGWP 590 (774)
Q Consensus 516 IIF~~sr~~~~~l~~~L~~~---g~~~~~~h~~l~~~~R~~~~~~F~~g-~~~vL-VAT~a~~~GIDip~V~~VI~~d~p 590 (774)
+|||+-+...+.+.+-|-+. .+....+.|..++.+|.++.++|.++ .++|| .+|-++|.|+|+...+.||.++-.
T Consensus 1344 LIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHD 1423 (1549)
T KOG0392|consen 1344 LIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHD 1423 (1549)
T ss_pred EEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecC
Confidence 99999999999999988764 33445889999999999999999999 77765 578999999999999999999999
Q ss_pred CCHHHHHHHhhccccCCCcceEEEE
Q 004098 591 QSLEAYYQEAGRAGRDGHLADCVLY 615 (774)
Q Consensus 591 ~s~~~y~Qr~GRaGR~G~~g~~il~ 615 (774)
||+-.-+|.+.||+|.|++-.+-+|
T Consensus 1424 WNPMrDLQAMDRAHRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1424 WNPMRDLQAMDRAHRIGQKRVVNVY 1448 (1549)
T ss_pred CCchhhHHHHHHHHhhcCceeeeee
Confidence 9999999999999999999887766
No 122
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=2.4e-18 Score=197.87 Aligned_cols=417 Identities=17% Similarity=0.161 Sum_probs=245.1
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHh--
Q 004098 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK-- 235 (774)
Q Consensus 161 l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~-- 235 (774)
+.++-++..|. .+++.|.-.--.+.+|+ |+.|.||.|||+++.+|++. .+..+-||+|+--|+.+.+.++..
T Consensus 71 vrEa~~R~lGm-~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 71 AREAGKRVMGM-RHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred HHHHHHHHhCC-CcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 44555667786 57888877766665565 99999999999999999874 688999999999999999999887
Q ss_pred --cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHH-HHHHH----HHHHHHhcCccEEEEecccccc---------
Q 004098 236 --HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI-RLIKP----LQRLAESRGIALFAIDEVHCVS--------- 299 (774)
Q Consensus 236 --~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~-~ll~~----~~~~~~~~~i~~iVIDEaH~l~--------- 299 (774)
+|+.+.++.++.+..... ... .++|+|+|..-+. ++|.. -....-...+.++||||+|.++
T Consensus 148 ~~lGl~v~~i~~~~~~~err-~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLI 224 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKR-AAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLI 224 (913)
T ss_pred cccCCEEEEECCCCCHHHHH-HHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCcee
Confidence 389999998877654432 222 2799999998762 12211 0111234779999999999874
Q ss_pred --cCCCCcHHHHHHHHHHHHHhccc-----------ccccccCCCCEEEEeccCCHHHHHHHHHHc---CCCC-CceEE-
Q 004098 300 --KWGHDFRPDYRRLSVLRENFGAN-----------NLKSLKFDIPLMALTATATIQVREDILKSL---HMSK-GTKFV- 361 (774)
Q Consensus 300 --~~g~~fr~~~~~l~~l~~~~~~~-----------~~~~l~~~~~il~lTAT~~~~~~~~i~~~L---~~~~-~~~~~- 361 (774)
.........|..+..+...+... .--.+-.....+.||- .-...+...+ ++.. ....+
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe----~G~~~~e~~~~~~~i~~~~~~ly~ 300 (913)
T PRK13103 225 ISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNE----AGHQFIEEMLTQAGLLAEGESLYS 300 (913)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeech----HHHHHHHHHhhhCCCcccchhccC
Confidence 11122344555555555444210 0000011222334443 2222222222 2210 00000
Q ss_pred ---------------EccCCCCCcEEEEeecC----------CccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCC
Q 004098 362 ---------------LTSFFRPNLRFSVKHSK----------TSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDD 416 (774)
Q Consensus 362 ---------------~~~~~r~~l~~~v~~~~----------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 416 (774)
...++..+..|.|...+ .-....|.+-+++.++.-..-.
T Consensus 301 ~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~---------------- 364 (913)
T PRK13103 301 AHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLN---------------- 364 (913)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCC----------------
Confidence 00112223333333210 0111234455555554321100
Q ss_pred ccCccCCCccccccc-CCCCCCCCCCCC--ccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhc
Q 004098 417 QSDTSSSSSMSEESR-ISPNIGDGYYDD--EDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERT 493 (774)
Q Consensus 417 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (774)
+..+.. .+.-..+.+|.. ...|++.+......+|..-.. ..+-.+..+.|....+.... ...
T Consensus 365 ---------I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~-----l~Vv~IPTnkP~~R~D~~d~-vy~ 429 (913)
T PRK13103 365 ---------IQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIYG-----LDVVVIPPNKPLARKDFNDL-VYL 429 (913)
T ss_pred ---------cCCCceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHHHhC-----CCEEECCCCCCcccccCCCe-EEc
Confidence 000000 000001112211 345666666555555554322 22222233333321111111 122
Q ss_pred cccCchhHhhhhccCCC-CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEeccc
Q 004098 494 DLLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572 (774)
Q Consensus 494 ~~~~k~~~ll~~L~~~~-~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~ 572 (774)
....|...+++.+.+.. .+.|+||-+.|....+.|++.|.+.|++...+++.....|-.-+-+.-+. -.|.|||+++
T Consensus 430 t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~~--GaVTIATNMA 507 (913)
T PRK13103 430 TAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGRP--GALTIATNMA 507 (913)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCCC--CcEEEeccCC
Confidence 33356666666666554 45699999999999999999999999998888887544443333333333 4799999999
Q ss_pred ccCcccC--------------------------------Cc-----ceEEEeCCCCCHHHHHHHhhccccCCCcceEEEE
Q 004098 573 GMGIDKL--------------------------------NV-----RRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (774)
Q Consensus 573 ~~GIDip--------------------------------~V-----~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~ 615 (774)
|||-||. .| -+||-...+.|..---|-.|||||.|.||.+.+|
T Consensus 508 GRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 587 (913)
T PRK13103 508 GRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFY 587 (913)
T ss_pred CCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE
Confidence 9999994 22 3799999999999999999999999999999999
Q ss_pred eeCCC
Q 004098 616 ANLSS 620 (774)
Q Consensus 616 ~~~~~ 620 (774)
++..|
T Consensus 588 lSlED 592 (913)
T PRK13103 588 LSLED 592 (913)
T ss_pred EEcCc
Confidence 98765
No 123
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.81 E-value=3.9e-18 Score=186.87 Aligned_cols=308 Identities=19% Similarity=0.241 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc------cCCeEEEEccchHHHHHHHHHHHh-----cCCcEEEEc
Q 004098 176 NFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHDQCSKLSK-----HGVTACFLG 244 (774)
Q Consensus 176 ~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~------~~~~~LVvsPt~~L~~qq~~~l~~-----~gi~~~~l~ 244 (774)
.+-.+.+..+-+++-+||+++||+|||. |+|-++ ..+.+.+.-|.|--+.-..+.... +|-.+.+-.
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKST--QipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~I 131 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKST--QIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTI 131 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCccc--cHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEE
Confidence 3445677788888899999999999996 455432 356688888987655555444433 233332221
Q ss_pred CCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhccccc
Q 004098 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324 (774)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~ 324 (774)
--. .......+|.|+|-++|++-+- ..-.+.+.++|||||||.-+ ...++ -++.|+..+..
T Consensus 132 RFe-------d~ts~~TrikymTDG~LLRE~l---~Dp~LskYsvIIlDEAHERs-----l~TDi-LlGlLKki~~~--- 192 (674)
T KOG0922|consen 132 RFE-------DSTSKDTRIKYMTDGMLLREIL---KDPLLSKYSVIILDEAHERS-----LHTDI-LLGLLKKILKK--- 192 (674)
T ss_pred Eec-------ccCCCceeEEEecchHHHHHHh---cCCccccccEEEEechhhhh-----hHHHH-HHHHHHHHHhc---
Confidence 100 0112346999999999986332 12235778999999999653 12221 12223332221
Q ss_pred ccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEcc-CCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhccc
Q 004098 325 KSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTS-FFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTG 403 (774)
Q Consensus 325 ~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~-~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 403 (774)
+++..++.+|||+..+...+.+.. .+.+.... .+.-.+.|.- ....+-....+..++++.
T Consensus 193 ---R~~LklIimSATlda~kfS~yF~~-----a~i~~i~GR~fPVei~y~~----~p~~dYv~a~~~tv~~Ih------- 253 (674)
T KOG0922|consen 193 ---RPDLKLIIMSATLDAEKFSEYFNN-----APILTIPGRTFPVEILYLK----EPTADYVDAALITVIQIH------- 253 (674)
T ss_pred ---CCCceEEEEeeeecHHHHHHHhcC-----CceEeecCCCCceeEEecc----CCchhhHHHHHHHHHHHH-------
Confidence 236789999999987766655543 12222222 2222222221 111111111111111110
Q ss_pred ccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCC
Q 004098 404 EKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRD 483 (774)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 483 (774)
T Consensus 254 -------------------------------------------------------------------------------- 253 (674)
T KOG0922|consen 254 -------------------------------------------------------------------------------- 253 (674)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhC----C--C--ceEEecCCCCHHHHHHHH
Q 004098 484 RDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF----G--V--KAAAYNASLPKSQLRRVH 555 (774)
Q Consensus 484 ~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~----g--~--~~~~~h~~l~~~~R~~~~ 555 (774)
...+.+-+|||....++.+.+++.|.+. + . -+.++||.|+.+++.++.
T Consensus 254 ------------------------~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF 309 (674)
T KOG0922|consen 254 ------------------------LTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVF 309 (674)
T ss_pred ------------------------ccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccc
Confidence 0115668999999999999999999874 1 1 257899999999999999
Q ss_pred HHHhcCCceEEEEecccccCcccCCcceEEEeCC------------------CCCHHHHHHHhhccccCCCcceEEEEee
Q 004098 556 TEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW------------------PQSLEAYYQEAGRAGRDGHLADCVLYAN 617 (774)
Q Consensus 556 ~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~------------------p~s~~~y~Qr~GRaGR~G~~g~~il~~~ 617 (774)
+.--.|.-+|++||++++..|.|+.|++||.-++ |-|-.+-.||.|||||.| +|.|+-+|+
T Consensus 310 ~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYt 388 (674)
T KOG0922|consen 310 DPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYT 388 (674)
T ss_pred cCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeee
Confidence 8888899999999999999999999999996664 557888999999999995 899999998
Q ss_pred CCCCCccCCCC
Q 004098 618 LSSMPTLLPSR 628 (774)
Q Consensus 618 ~~~~~~~~~~~ 628 (774)
..+...+.+..
T Consensus 389 e~~~~~~~~~~ 399 (674)
T KOG0922|consen 389 ESAYDKMPLQT 399 (674)
T ss_pred HHHHhhcccCC
Confidence 87776555443
No 124
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.80 E-value=4e-17 Score=196.87 Aligned_cols=104 Identities=12% Similarity=0.150 Sum_probs=79.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcc--eE
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVR--RI 584 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~--~V 584 (774)
..+++|||++|.+..+.++..|.. .++. .+..+.. ..|.+++++|++++..||++|+.|.+|||+|+.. .|
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~v 749 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCL 749 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEE
Confidence 357899999999999999999975 2333 3333333 5789999999999999999999999999999876 57
Q ss_pred EEeCCCCC------------------------------HHHHHHHhhccccCCCcceEEEEee
Q 004098 585 IHYGWPQS------------------------------LEAYYQEAGRAGRDGHLADCVLYAN 617 (774)
Q Consensus 585 I~~d~p~s------------------------------~~~y~Qr~GRaGR~G~~g~~il~~~ 617 (774)
|...+|.. +..+.|.+||.=|.....-++++++
T Consensus 750 iI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD 812 (850)
T TIGR01407 750 VIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILD 812 (850)
T ss_pred EEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEc
Confidence 77777631 2335689999999875444555554
No 125
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.77 E-value=1.7e-17 Score=185.79 Aligned_cols=326 Identities=18% Similarity=0.140 Sum_probs=183.7
Q ss_pred CCCCCHHHHHHHHHHHc----C-CCEEEEecCCCchHHHHHH--hhhc---cCCeEEEEccchHHHHHHHHHHHhcCCc-
Q 004098 171 HSSLKNFQKEALSAWLA----H-HDCLVLAATGSGKSLCFQI--PALL---TGKVVVVISPLISLMHDQCSKLSKHGVT- 239 (774)
Q Consensus 171 ~~~~r~~Q~~ai~~il~----g-~d~lv~apTGsGKTl~~~l--pal~---~~~~~LVvsPt~~L~~qq~~~l~~~gi~- 239 (774)
-..+|.||..||..+.. | +-+|++|.||+|||.++.. -.|. .-+++|+|+-+++|+.|.+.++.++-..
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc
Confidence 34689999999988763 4 3499999999999976432 2233 3579999999999999999999886332
Q ss_pred --EEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHH---HHHHHhcCccEEEEecccccccCCCCcHHHHHHHHH
Q 004098 240 --ACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL---QRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSV 314 (774)
Q Consensus 240 --~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~---~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~ 314 (774)
...+.... ..+.++|.++|.+++...+..- ...+....+++|||||||+=+ |..-..
T Consensus 243 ~~~n~i~~~~---------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi---------~~~~~~ 304 (875)
T COG4096 243 TKMNKIEDKK---------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI---------YSEWSS 304 (875)
T ss_pred cceeeeeccc---------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH---------HhhhHH
Confidence 22221111 1125799999999988655421 112233558999999999753 222223
Q ss_pred HHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHc-CCCCCceEE------EccCCCCCcEEEEeecCCccchhhhH
Q 004098 315 LRENFGANNLKSLKFDIPLMALTATATIQVREDILKSL-HMSKGTKFV------LTSFFRPNLRFSVKHSKTSSRASYKK 387 (774)
Q Consensus 315 l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L-~~~~~~~~~------~~~~~r~~l~~~v~~~~~~~~~~~~~ 387 (774)
+...| +.-+++|||||....-.+-...+ +.+ ...+ ...|.-|.-.+.+...-....
T Consensus 305 I~dYF----------dA~~~gLTATP~~~~d~~T~~~F~g~P--t~~YsleeAV~DGfLvpy~vi~i~~~~~~~G----- 367 (875)
T COG4096 305 ILDYF----------DAATQGLTATPKETIDRSTYGFFNGEP--TYAYSLEEAVEDGFLVPYKVIRIDTDFDLDG----- 367 (875)
T ss_pred HHHHH----------HHHHHhhccCcccccccccccccCCCc--ceeecHHHHhhccccCCCCceEEeeeccccC-----
Confidence 34444 23345669999765443333333 111 1110 011111111111110000000
Q ss_pred hHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccc-cccCCCCC--CCCCCCCccCCCCCCccchhhhhhhcCC
Q 004098 388 DFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSE-ESRISPNI--GDGYYDDEDVGNSPMGKEMSVEFLENDS 464 (774)
Q Consensus 388 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (774)
. .+ ...++ +...-..+ .+..|.......
T Consensus 368 -----------------~---------------~~-~~~serek~~g~~i~~dd~~~~~~d~dr---------------- 398 (875)
T COG4096 368 -----------------W---------------KP-DAGSEREKLQGEAIDEDDQNFEARDFDR---------------- 398 (875)
T ss_pred -----------------c---------------Cc-CccchhhhhhccccCcccccccccccch----------------
Confidence 0 00 00000 00000000 111111100000
Q ss_pred CcccccccccccCCCCCCCCCCccchhhccccCchh-HhhhhccC--CC-CCCcEEEEeCchHHHHHHHHHHHhC-----
Q 004098 465 VDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPA-ERLSMLQE--PL-EDGLTIIYVPTRKETLSIAKYLCGF----- 535 (774)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~ll~~L~~--~~-~~~~~IIF~~sr~~~~~l~~~L~~~----- 535 (774)
............ .+.+.|.+ .. ..+++||||.+..+|+.+...|...
T Consensus 399 ------------------------~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~ 454 (875)
T COG4096 399 ------------------------TLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYN 454 (875)
T ss_pred ------------------------hccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcccc
Confidence 000000000111 11222222 11 1468999999999999999999864
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhc--CCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccC
Q 004098 536 GVKAAAYNASLPKSQLRRVHTEFHE--NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRD 606 (774)
Q Consensus 536 g~~~~~~h~~l~~~~R~~~~~~F~~--g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~ 606 (774)
|--|..+.++-.+ =+..+..|.. --.+|.|+.+++..|||+|.|..+|.+-.-.|..-|.|++||+-|.
T Consensus 455 ~~~a~~IT~d~~~--~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 455 GRYAMKITGDAEQ--AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred CceEEEEeccchh--hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 2335556654333 2444555553 3457888889999999999999999999999999999999999983
No 126
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=7.4e-17 Score=183.58 Aligned_cols=415 Identities=15% Similarity=0.159 Sum_probs=247.1
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHh--
Q 004098 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK-- 235 (774)
Q Consensus 161 l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~-- 235 (774)
+.++.++.+|+ .|++.|.-+--.+..|+ |+.|.||-||||++.+|+.+ .+..|-||+..--|+..-..++..
T Consensus 67 vREA~~R~lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 67 AREATKRVLGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred HHHHHHHHhCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHH
Confidence 45566678888 68899988877776665 89999999999999999864 577777778888998655555544
Q ss_pred --cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHH-HHHHH-H---HHHHHhcCccEEEEecccccc---------
Q 004098 236 --HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI-RLIKP-L---QRLAESRGIALFAIDEVHCVS--------- 299 (774)
Q Consensus 236 --~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~-~ll~~-~---~~~~~~~~i~~iVIDEaH~l~--------- 299 (774)
+|+.+.+..++.+...... . -.++|+|+|...|. ++|.. + ....-...+.+.||||||.++
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~-a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLI 220 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKRE-A--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLI 220 (925)
T ss_pred HHhCCceeeeCCCCChHHHHH-h--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCccc
Confidence 5999998887766543222 2 24799999988764 23331 1 112224678999999999874
Q ss_pred --cCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceE-------------EEcc
Q 004098 300 --KWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKF-------------VLTS 364 (774)
Q Consensus 300 --~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~-------------~~~~ 364 (774)
.........|..+..+...+...... +-.....+.||. .-...+...|++..-... -...
T Consensus 221 ISg~~~~~~~~Y~~~~~~v~~L~~~dy~-iDek~k~v~LTe----~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~ 295 (925)
T PRK12903 221 ISGGQSNDSNLYLAADQFVRTLKEDDYK-IDEETKAISLTE----KGIKKANKFFKLKNLYDIENSELVHRIQNALRAHK 295 (925)
T ss_pred ccCCCccchHHHHHHHHHHHhccccceE-EecccceEEECH----hHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHH
Confidence 11222235677776666655321110 111223344443 333444445544210000 0000
Q ss_pred CCCCCcEEEEeec----------CCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCccccccc-CC
Q 004098 365 FFRPNLRFSVKHS----------KTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESR-IS 433 (774)
Q Consensus 365 ~~r~~l~~~v~~~----------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 433 (774)
++..+..|.|... ..-....|.+-+++.++.-..-. ...+.. .+
T Consensus 296 lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~-------------------------I~~e~~TlA 350 (925)
T PRK12903 296 VMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVE-------------------------IEPETKTLA 350 (925)
T ss_pred HHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCC-------------------------CCCCceeee
Confidence 2333444444321 11111345566666665321100 000000 00
Q ss_pred CCCCCCCCC--CccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCC-
Q 004098 434 PNIGDGYYD--DEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL- 510 (774)
Q Consensus 434 ~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~- 510 (774)
.--.+.+|. ....|++.+......+|..-.+++ ...+..+.|....+.. .........|...+++.+.+..
T Consensus 351 sIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~-----Vv~IPTnkP~~R~D~~-d~iy~t~~~K~~Aii~ei~~~~~ 424 (925)
T PRK12903 351 TITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMR-----VNVVPTNKPVIRKDEP-DSIFGTKHAKWKAVVKEVKRVHK 424 (925)
T ss_pred eehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCC-----EEECCCCCCeeeeeCC-CcEEEcHHHHHHHHHHHHHHHHh
Confidence 001111221 134566666655555665432221 1122222222111111 1112223456666776666543
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC-CceEEEEecccccCcccCCcc-------
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHEN-KLEVVVATIAFGMGIDKLNVR------- 582 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g-~~~vLVAT~a~~~GIDip~V~------- 582 (774)
.+.|+||.|.|...++.|+..|.+.|++...+++.-.. ++.-+-. ..| .-.|.|||+++|||.||.--.
T Consensus 425 ~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e--~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GG 501 (925)
T PRK12903 425 KGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNA--REAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGG 501 (925)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchh--hHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCC
Confidence 56699999999999999999999999999999986433 3332222 334 457999999999999996322
Q ss_pred -eEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 583 -RIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 583 -~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
+||....|.|..---|-.|||||.|.+|.+..|.+..|
T Consensus 502 LhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 502 LYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred cEEEecccCchHHHHHHHhcccccCCCCCcceEEEecch
Confidence 89999999999999999999999999999999988665
No 127
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.73 E-value=8.5e-18 Score=141.26 Aligned_cols=78 Identities=33% Similarity=0.544 Sum_probs=75.9
Q ss_pred HHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCC
Q 004098 530 KYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607 (774)
Q Consensus 530 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G 607 (774)
++|+..++.+..+||++++++|..+++.|++++..|||||+++++|||+|++++||+|++|+|+..|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999987
No 128
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.1e-15 Score=174.70 Aligned_cols=376 Identities=15% Similarity=0.143 Sum_probs=212.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHh--
Q 004098 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK-- 235 (774)
Q Consensus 161 l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~-- 235 (774)
+.++.++.+|. .|++.|.-+--.+.+|+ |+.|.||-||||++.+|+.+ .+..+-||++.--|+..-.+++..
T Consensus 74 vREa~~R~lG~-r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 74 VREASKRVLGM-RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred HHHHHHHHhCC-CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 45556667787 58888877766666665 99999999999999999985 588899999999998866666655
Q ss_pred --cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHH-HHHHH-H---HHHHHhcCccEEEEecccccc-c-------
Q 004098 236 --HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI-RLIKP-L---QRLAESRGIALFAIDEVHCVS-K------- 300 (774)
Q Consensus 236 --~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~-~ll~~-~---~~~~~~~~i~~iVIDEaH~l~-~------- 300 (774)
+|+.+.++.++.+..... ..-.++|+|+|+..|. ++|.. + ........+.+.||||||.++ +
T Consensus 151 ~~LGLtvg~i~~~~~~~err---~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLI 227 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERK---KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLI 227 (939)
T ss_pred HHhCCeEEEECCCCChHHHH---HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCccc
Confidence 499999988776654322 2235799999999873 22221 1 111234678999999999874 1
Q ss_pred ---CCCCcHHHHHHHHHHHHHhcc------cccccccCCCCEEEEeccCCHHHHHHHHHHcCCCC---Cce---------
Q 004098 301 ---WGHDFRPDYRRLSVLRENFGA------NNLKSLKFDIPLMALTATATIQVREDILKSLHMSK---GTK--------- 359 (774)
Q Consensus 301 ---~g~~fr~~~~~l~~l~~~~~~------~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~---~~~--------- 359 (774)
....-...|.....+...+.. ..--.+......+.||.. -...+...+++.+ ...
T Consensus 228 ISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~----G~~~~e~~~~i~nLy~~~~~~~~~i~~A 303 (939)
T PRK12902 228 ISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDE----GFAKAEQLLGVSDLFDPQDPWAHYIFNA 303 (939)
T ss_pred ccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHH----HHHHHHHHhCchhhcCcccHHHHHHHHH
Confidence 122234456666655555432 100011123445556543 2333333333211 000
Q ss_pred EEEccCCCCCcEEEEeecC----------CccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCccccc
Q 004098 360 FVLTSFFRPNLRFSVKHSK----------TSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEE 429 (774)
Q Consensus 360 ~~~~~~~r~~l~~~v~~~~----------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (774)
+....++..+..|.|...+ .-....|.+-+++.++.-..-. ..++
T Consensus 304 L~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~-------------------------it~e 358 (939)
T PRK12902 304 LKAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVE-------------------------IQPE 358 (939)
T ss_pred HHHHHHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCC-------------------------CCCC
Confidence 0001123334455544211 1112356666777765322100 0000
Q ss_pred cc-CCCCCCCCCCC--CccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhc
Q 004098 430 SR-ISPNIGDGYYD--DEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSML 506 (774)
Q Consensus 430 ~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L 506 (774)
.. .+.--.+.+|. ....|++.+......+|..-.++ ....+..+.|+...+.... .......|...+++.+
T Consensus 359 ~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l-----~Vv~IPTnkP~~R~d~~d~-vy~t~~~K~~Ai~~ei 432 (939)
T PRK12902 359 TQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKL-----EVTVIPTNRPRRRQDWPDQ-VYKTEIAKWRAVANET 432 (939)
T ss_pred ceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCC-----cEEEcCCCCCeeeecCCCe-EEcCHHHHHHHHHHHH
Confidence 00 00001111221 13445555555555555443222 1222222223221111111 1222235666666666
Q ss_pred cCCC-CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCC-CC-HHHHHHHHHHHhcCCceEEEEecccccCcccC
Q 004098 507 QEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNAS-LP-KSQLRRVHTEFHENKLEVVVATIAFGMGIDKL 579 (774)
Q Consensus 507 ~~~~-~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~-l~-~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip 579 (774)
.+.. .+.|+||-+.|.+..+.++..|.+.|+....+++. .. ..|-.-+-+.-+.| .|-|||+++|||-||.
T Consensus 433 ~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~~G--aVTIATNMAGRGTDIk 506 (939)
T PRK12902 433 AEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGRKG--AVTIATNMAGRGTDII 506 (939)
T ss_pred HHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCCCC--cEEEeccCCCCCcCEe
Confidence 5544 56699999999999999999999999999999996 22 23323333333333 6899999999998873
No 129
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.73 E-value=2.3e-17 Score=153.22 Aligned_cols=118 Identities=34% Similarity=0.505 Sum_probs=107.7
Q ss_pred chhHhhhhccCCC-CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCc
Q 004098 498 KPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGI 576 (774)
Q Consensus 498 k~~~ll~~L~~~~-~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GI 576 (774)
+...+...+.+.. .++++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|+++...||++|.++++|+
T Consensus 13 k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~ 92 (131)
T cd00079 13 KLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGI 92 (131)
T ss_pred HHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCc
Confidence 4555555555543 467999999999999999999999899999999999999999999999999999999999999999
Q ss_pred ccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEE
Q 004098 577 DKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (774)
Q Consensus 577 Dip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~ 615 (774)
|+|.+++||+++.|++...|.|++||++|.|+.|.+++|
T Consensus 93 d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 93 DLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred ChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999988764
No 130
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.73 E-value=2.6e-17 Score=178.62 Aligned_cols=105 Identities=25% Similarity=0.278 Sum_probs=98.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc-CCceEEEEecccccCcccCCcceEEEeCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE-NKLEVVVATIAFGMGIDKLNVRRIIHYGW 589 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~-g~~~vLVAT~a~~~GIDip~V~~VI~~d~ 589 (774)
.+.++|+|.+..+..+.+.+||..+++....+.|.....+|..++.+|.. +.+-+|++|.++|.|||+...+.||.||.
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdS 1122 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDS 1122 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecC
Confidence 45699999999999999999999999999999999999999999999995 55678999999999999999999999999
Q ss_pred CCCHHHHHHHhhccccCCCcceEEEE
Q 004098 590 PQSLEAYYQEAGRAGRDGHLADCVLY 615 (774)
Q Consensus 590 p~s~~~y~Qr~GRaGR~G~~g~~il~ 615 (774)
.|++..-.|.+.||+|-|+.-.+.+|
T Consensus 1123 DWNPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388|consen 1123 DWNPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred CCCcchhhHHHHHHHhccCccceeee
Confidence 99999999999999999999887766
No 131
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.73 E-value=2.3e-15 Score=172.77 Aligned_cols=375 Identities=17% Similarity=0.123 Sum_probs=204.6
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHh--
Q 004098 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK-- 235 (774)
Q Consensus 161 l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~-- 235 (774)
+.++.++.+|+ .|++.|.-+.-.+. +.-|+.|.||.||||++.+|+.+ .+..+-||+++..|+.+-++++..
T Consensus 65 vrEa~~R~lG~-r~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 65 TREASFRTLGL-RHFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred HHHHHHHHhCC-CCCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHH
Confidence 45566677888 48888877665554 45699999999999999999964 588899999999999887777665
Q ss_pred --cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHH-HHHHH-H---HHHHHhcCccEEEEecccccc-c-------
Q 004098 236 --HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI-RLIKP-L---QRLAESRGIALFAIDEVHCVS-K------- 300 (774)
Q Consensus 236 --~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~-~ll~~-~---~~~~~~~~i~~iVIDEaH~l~-~------- 300 (774)
+|+.+.++.++.+..... .. =.++|+|+|...+. ++|.. + ........+.+.||||||.++ +
T Consensus 142 ~~LGLsvg~i~~~~~~~err-~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLi 218 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERK-KN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLI 218 (870)
T ss_pred HHcCCceeeeCCCCChHHHH-Hh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCcee
Confidence 499999887776664322 22 23699999987654 22221 1 112234678999999999874 1
Q ss_pred ---CCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceE------------EEccC
Q 004098 301 ---WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKF------------VLTSF 365 (774)
Q Consensus 301 ---~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~------------~~~~~ 365 (774)
....-...|..+..+...+....--.+-.....+.|| ..-...+...+++.+-... -...+
T Consensus 219 ISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LT----e~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~l 294 (870)
T CHL00122 219 ISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILT----EQGILFIEKILKIEDLYSANDPWIPYILNALKAKEL 294 (870)
T ss_pred ccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEec----HHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHH
Confidence 1112234555555555544321000011122233333 3444444444443210000 00011
Q ss_pred CCCCcEEEEeecC----------CccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCccccccc-CCC
Q 004098 366 FRPNLRFSVKHSK----------TSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESR-ISP 434 (774)
Q Consensus 366 ~r~~l~~~v~~~~----------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 434 (774)
+..+..|.|...+ .-....|.+-+++.++.-..-. +.++.. .+.
T Consensus 295 f~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~-------------------------It~e~~tlAs 349 (870)
T CHL00122 295 FFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLP-------------------------IRQETETLAS 349 (870)
T ss_pred HhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCC-------------------------CCCCceeeee
Confidence 2233334433211 0111244555555554311100 000000 000
Q ss_pred CCCCCCCCC--ccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCC-CC
Q 004098 435 NIGDGYYDD--EDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-LE 511 (774)
Q Consensus 435 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~-~~ 511 (774)
--.+.+|.. ...|++.+......+|..-.++ ..-.+..+.|....+. ..........|...+++.+.+. ..
T Consensus 350 IT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l-----~vv~IPtnkp~~R~d~-~d~v~~t~~~K~~AI~~ei~~~~~~ 423 (870)
T CHL00122 350 ITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNL-----EVVCIPTHRPMLRKDL-PDLIYKDELSKWRAIADECLQMHQT 423 (870)
T ss_pred eeHHHHHHhCchhcccCCCCHHHHHHHHHHhCC-----CEEECCCCCCccceeC-CCeEEeCHHHHHHHHHHHHHHHHhc
Confidence 001111111 3445555555444454432221 1112222222221111 1111222334555566655444 34
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCC--HHHHHHHHHHHhcCCceEEEEecccccCccc
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLP--KSQLRRVHTEFHENKLEVVVATIAFGMGIDK 578 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~--~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDi 578 (774)
+.|+||-|.|....+.|+..|.+.|++...+++.-. ..|-.-+-+.=+. -.|.|||+++|||.||
T Consensus 424 grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG~~--G~VTIATNMAGRGTDI 490 (870)
T CHL00122 424 GRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRK--GSITIATNMAGRGTDI 490 (870)
T ss_pred CCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhcCCC--CcEEEeccccCCCcCe
Confidence 569999999999999999999999999999999642 3333333333333 4799999999999887
No 132
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.72 E-value=3.4e-16 Score=177.36 Aligned_cols=105 Identities=17% Similarity=0.243 Sum_probs=98.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC--ceEEEEecccccCcccCCcceEEEeC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK--LEVVVATIAFGMGIDKLNVRRIIHYG 588 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~--~~vLVAT~a~~~GIDip~V~~VI~~d 588 (774)
.+.++|||++..+..+-|..+|+.+|+....+.|...-++|+..+++|..+. +.+|++|...|.|||+-..+.||+||
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYD 1354 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYD 1354 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEec
Confidence 4569999999999999999999999999999999999999999999999774 56889999999999999999999999
Q ss_pred CCCCHHHHHHHhhccccCCCcceEEEE
Q 004098 589 WPQSLEAYYQEAGRAGRDGHLADCVLY 615 (774)
Q Consensus 589 ~p~s~~~y~Qr~GRaGR~G~~g~~il~ 615 (774)
..||+.-.-|...|++|.|+.-.+.+|
T Consensus 1355 sDwNPtMDaQAQDrChRIGqtRDVHIY 1381 (1958)
T KOG0391|consen 1355 SDWNPTMDAQAQDRCHRIGQTRDVHIY 1381 (1958)
T ss_pred CCCCchhhhHHHHHHHhhcCccceEEE
Confidence 999999999999999999999888776
No 133
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=1.5e-16 Score=172.32 Aligned_cols=314 Identities=18% Similarity=0.226 Sum_probs=199.7
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc------cC-CeEEEEccchHHHHHHHHHHH
Q 004098 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TG-KVVVVISPLISLMHDQCSKLS 234 (774)
Q Consensus 162 ~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~------~~-~~~LVvsPt~~L~~qq~~~l~ 234 (774)
...+.+.-..-..++|-.+.+.++-.++-+||.+.||||||. |+|-.+ .+ +++=+.-|.|--+.-+.....
T Consensus 254 ~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA 331 (902)
T KOG0923|consen 254 RESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVA 331 (902)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhcccccCCceEeecCcchHHHHHHHHHHH
Confidence 344444444556678888999999999999999999999996 566543 23 347778898877666655554
Q ss_pred h-cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHH--HH
Q 004098 235 K-HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDY--RR 311 (774)
Q Consensus 235 ~-~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~--~~ 311 (774)
+ .|++...-.|-... .........-|=|+|-++|++-+ ..-.++...+.|||||||.-. ...++ .-
T Consensus 332 ~EMgvkLG~eVGYsIR---FEdcTSekTvlKYMTDGmLlREf---L~epdLasYSViiiDEAHERT-----L~TDILfgL 400 (902)
T KOG0923|consen 332 EEMGVKLGHEVGYSIR---FEDCTSEKTVLKYMTDGMLLREF---LSEPDLASYSVIIVDEAHERT-----LHTDILFGL 400 (902)
T ss_pred HHhCcccccccceEEE---eccccCcceeeeeecchhHHHHH---hccccccceeEEEeehhhhhh-----hhhhHHHHH
Confidence 3 44332111111000 01111234578899999998532 223356778999999999642 11111 11
Q ss_pred HHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHH
Q 004098 312 LSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQ 391 (774)
Q Consensus 312 l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~ 391 (774)
+..+ ...+++..+|..|||+..+-...++. +..+|...-.| |.|.......+.
T Consensus 401 vKDI---------ar~RpdLKllIsSAT~DAekFS~fFD------dapIF~iPGRR----yPVdi~Yt~~PE-------- 453 (902)
T KOG0923|consen 401 VKDI---------ARFRPDLKLLISSATMDAEKFSAFFD------DAPIFRIPGRR----YPVDIFYTKAPE-------- 453 (902)
T ss_pred HHHH---------HhhCCcceEEeeccccCHHHHHHhcc------CCcEEeccCcc----cceeeecccCCc--------
Confidence 1111 12245888999999998766554432 22333322222 222211111100
Q ss_pred HHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccc
Q 004098 392 LIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVA 471 (774)
Q Consensus 392 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 471 (774)
.+|+......
T Consensus 454 -----------------------------------------------------------------AdYldAai~t----- 463 (902)
T KOG0923|consen 454 -----------------------------------------------------------------ADYLDAAIVT----- 463 (902)
T ss_pred -----------------------------------------------------------------hhHHHHHHhh-----
Confidence 0111110000
Q ss_pred cccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHh---------CCCceEEe
Q 004098 472 CGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG---------FGVKAAAY 542 (774)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~---------~g~~~~~~ 542 (774)
++.+ -..-+.+-+|||..-.++.+...+.|.. ..+-++++
T Consensus 464 ------------------------------VlqI-H~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~Pi 512 (902)
T KOG0923|consen 464 ------------------------------VLQI-HLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPI 512 (902)
T ss_pred ------------------------------heee-EeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeec
Confidence 0000 0001446799999888887777777654 24568999
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCC------------------CCCHHHHHHHhhccc
Q 004098 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW------------------PQSLEAYYQEAGRAG 604 (774)
Q Consensus 543 h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~------------------p~s~~~y~Qr~GRaG 604 (774)
|+.|+.+.+..+++---.|.-+|++||++++..|.|++|.+||.-+. |-|-.+-.||+||||
T Consensus 513 YaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAG 592 (902)
T KOG0923|consen 513 YANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAG 592 (902)
T ss_pred cccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccC
Confidence 99999999999998888999999999999999999999999996654 446778899999999
Q ss_pred cCCCcceEEEEee
Q 004098 605 RDGHLADCVLYAN 617 (774)
Q Consensus 605 R~G~~g~~il~~~ 617 (774)
|.| +|.|+-+|+
T Consensus 593 Rtg-PGKCfRLYt 604 (902)
T KOG0923|consen 593 RTG-PGKCFRLYT 604 (902)
T ss_pred CCC-CCceEEeec
Confidence 996 899998887
No 134
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.71 E-value=1.6e-16 Score=158.20 Aligned_cols=171 Identities=30% Similarity=0.429 Sum_probs=127.7
Q ss_pred hcCCCCCCHHHHHHHHHHHcC-CCEEEEecCCCchHHHHHHhhhc---c--CCeEEEEccchHHHHHHHHHHHhcC----
Q 004098 168 HFGHSSLKNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQIPALL---T--GKVVVVISPLISLMHDQCSKLSKHG---- 237 (774)
Q Consensus 168 ~~g~~~~r~~Q~~ai~~il~g-~d~lv~apTGsGKTl~~~lpal~---~--~~~~LVvsPt~~L~~qq~~~l~~~g---- 237 (774)
.+++..++++|.+++..++.. +++++.+|||+|||.++..+++. . ...+||++|+.+++.|+...+.+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 356788999999999999988 99999999999999988877764 2 3689999999999999999998865
Q ss_pred CcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHH
Q 004098 238 VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRE 317 (774)
Q Consensus 238 i~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~ 317 (774)
.......++.........+..+..+|+++|++.+.+.+.. .......++++||||||.+..+. +...+..+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~--~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~~~~~~- 157 (201)
T smart00487 83 LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEN--DLLELSNVDLVILDEAHRLLDGG--FGDQLEKLLKLL- 157 (201)
T ss_pred eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHc--CCcCHhHCCEEEEECHHHHhcCC--cHHHHHHHHHhC-
Confidence 2334444444433444445555559999999999876652 22345678999999999998643 555555553321
Q ss_pred HhcccccccccCCCCEEEEeccCCHHHHHHHHHHcC
Q 004098 318 NFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (774)
Q Consensus 318 ~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~ 353 (774)
+...+++++|||++..........+.
T Consensus 158 ----------~~~~~~v~~saT~~~~~~~~~~~~~~ 183 (201)
T smart00487 158 ----------PKNVQLLLLSATPPEEIENLLELFLN 183 (201)
T ss_pred ----------CccceEEEEecCCchhHHHHHHHhcC
Confidence 23788999999999777666655553
No 135
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=4.1e-16 Score=169.17 Aligned_cols=125 Identities=21% Similarity=0.272 Sum_probs=98.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh----------CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCG----------FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLN 580 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~----------~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~ 580 (774)
..+-++||..-.+.++..+..+.. .++.+.++++.|++.-+.++++.-..|.-+++|||++++..|.+|+
T Consensus 562 ~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~g 641 (1042)
T KOG0924|consen 562 PPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPG 641 (1042)
T ss_pred CCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecc
Confidence 456799999877766655555443 2678999999999999999999888999999999999999999999
Q ss_pred cceEEEeCC------------------CCCHHHHHHHhhccccCCCcceEEEEeeCC-CCCccCCCCCCHHHHHH
Q 004098 581 VRRIIHYGW------------------PQSLEAYYQEAGRAGRDGHLADCVLYANLS-SMPTLLPSRRSEDQTKQ 636 (774)
Q Consensus 581 V~~VI~~d~------------------p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~-~~~~~~~~~~~~~~~~~ 636 (774)
+++||..+. |-|-.+--||.|||||.| +|.|+-+|+.. -...|++....+.|..+
T Consensus 642 I~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ay~~eml~stvPEIqRTN 715 (1042)
T KOG0924|consen 642 IRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDAYKNEMLPSTVPEIQRTN 715 (1042)
T ss_pred eEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-CcceeeehhhhHHHhhcccCCCchhhhcc
Confidence 999997665 557777889999999995 89999998753 33345444333444333
No 136
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.70 E-value=2e-15 Score=158.80 Aligned_cols=378 Identities=14% Similarity=0.125 Sum_probs=211.7
Q ss_pred CCCCCHHHHHHHHHHHc-CCCEEEEecCCCchHHHHHHhhh--ccCCeEEEEccchHHHHHHHHHHHhcC---CcEEEEc
Q 004098 171 HSSLKNFQKEALSAWLA-HHDCLVLAATGSGKSLCFQIPAL--LTGKVVVVISPLISLMHDQCSKLSKHG---VTACFLG 244 (774)
Q Consensus 171 ~~~~r~~Q~~ai~~il~-g~d~lv~apTGsGKTl~~~lpal--~~~~~~LVvsPt~~L~~qq~~~l~~~g---i~~~~l~ 244 (774)
++.+-|+|++.+...|+ |-.+++...+|.|||+-++..|- ......|||+|- +|-..|.++|.+|- .++..+.
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwplliVcPA-svrftWa~al~r~lps~~pi~vv~ 274 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFVVD 274 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCcEEEEecH-HHhHHHHHHHHHhcccccceEEEe
Confidence 34688999999998885 66799999999999997665543 347789999995 88889999999972 2222222
Q ss_pred CCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhccccc
Q 004098 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324 (774)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~ 324 (774)
.+.+.-. .+-....|.|++++.+..+ ...+....+.+||+||+|.+.+--. ...+.+..+.+.
T Consensus 275 ~~~D~~~----~~~t~~~v~ivSye~ls~l----~~~l~~~~~~vvI~DEsH~Lk~skt---kr~Ka~~dllk~------ 337 (689)
T KOG1000|consen 275 KSSDPLP----DVCTSNTVAIVSYEQLSLL----HDILKKEKYRVVIFDESHMLKDSKT---KRTKAATDLLKV------ 337 (689)
T ss_pred cccCCcc----ccccCCeEEEEEHHHHHHH----HHHHhcccceEEEEechhhhhccch---hhhhhhhhHHHH------
Confidence 2222110 0112247999999987543 3344445689999999999965221 112222222221
Q ss_pred ccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCc------eEEEccCCCCCcEEEEeecCCccchhhhH------hHHHH
Q 004098 325 KSLKFDIPLMALTATATIQVREDILKSLHMSKGT------KFVLTSFFRPNLRFSVKHSKTSSRASYKK------DFCQL 392 (774)
Q Consensus 325 ~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~------~~~~~~~~r~~l~~~v~~~~~~~~~~~~~------~l~~l 392 (774)
-..+|+||+||.-.--.++...+..-+.. .+-....+-....+....+.......+.- .++.+
T Consensus 338 -----akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRl 412 (689)
T KOG1000|consen 338 -----AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRL 412 (689)
T ss_pred -----hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHH
Confidence 35689999999543333222222111000 00000011111111111111111111111 12222
Q ss_pred HHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCccccccc
Q 004098 393 IDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVAC 472 (774)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 472 (774)
......+.......-.++...-.+. .......+... + ..+............|....+
T Consensus 413 K~dvL~qLPpKrr~Vv~~~~gr~da---~~~~lv~~a~~---------~--t~~~~~e~~~~~l~l~y~~tg-------- 470 (689)
T KOG1000|consen 413 KADVLKQLPPKRREVVYVSGGRIDA---RMDDLVKAAAD---------Y--TKVNSMERKHESLLLFYSLTG-------- 470 (689)
T ss_pred HHHHHhhCCccceEEEEEcCCccch---HHHHHHHHhhh---------c--chhhhhhhhhHHHHHHHHHhc--------
Confidence 2222222211111111111110000 00000000000 0 000000000001111111111
Q ss_pred ccccCCCCCCCCCCccchhhccccCchhHhhhhccC-----CCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCC
Q 004098 473 GEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQE-----PLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLP 547 (774)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~-----~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~ 547 (774)
..|.....+.|.. ..+..+.+|||......+.|...++++++....+.|..+
T Consensus 471 -----------------------iaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~ 527 (689)
T KOG1000|consen 471 -----------------------IAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTP 527 (689)
T ss_pred -----------------------ccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCC
Confidence 1111122222211 114558999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CceE-EEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEe
Q 004098 548 KSQLRRVHTEFHEN-KLEV-VVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYA 616 (774)
Q Consensus 548 ~~~R~~~~~~F~~g-~~~v-LVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~ 616 (774)
..+|....+.|... ++.| +++-.++++||++...+.||+..++||+--.+|.-.|++|.|+++-+.++|
T Consensus 528 s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 528 SHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred chhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEE
Confidence 99999999999954 4544 445678999999999999999999999999999999999999988775554
No 137
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=3.8e-16 Score=172.08 Aligned_cols=80 Identities=23% Similarity=0.268 Sum_probs=66.7
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCC--------CCCHH----------HHHHH
Q 004098 538 KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW--------PQSLE----------AYYQE 599 (774)
Q Consensus 538 ~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~--------p~s~~----------~y~Qr 599 (774)
-|.++++-|+.+.+.++++.--.|.--++|||++++..|.||+|++||..+. -..++ +--||
T Consensus 606 yvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQR 685 (1172)
T KOG0926|consen 606 YVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQR 685 (1172)
T ss_pred EEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchh
Confidence 3677888888888999988888999999999999999999999999996554 22333 34599
Q ss_pred hhccccCCCcceEEEEeeC
Q 004098 600 AGRAGRDGHLADCVLYANL 618 (774)
Q Consensus 600 ~GRaGR~G~~g~~il~~~~ 618 (774)
+|||||.| +|.|+-+|+.
T Consensus 686 AGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 686 AGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred ccccCCCC-CCceeehhhh
Confidence 99999996 8999988863
No 138
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.70 E-value=9.6e-16 Score=177.20 Aligned_cols=348 Identities=16% Similarity=0.172 Sum_probs=213.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCCchHHH---HHHhhhc---cCCeEEEEccchHHHHHHHHHHHh-----cCCcEE
Q 004098 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLC---FQIPALL---TGKVVVVISPLISLMHDQCSKLSK-----HGVTAC 241 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~---~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~-----~gi~~~ 241 (774)
.....+.+++.++.+.+.+++.+.||+|||.- |+|-... ....+++--|.|--+--.++.... .|-.+.
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VG 252 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVG 252 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeee
Confidence 45677888999999899999999999999963 3333221 134677778876554444444433 232222
Q ss_pred EEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcc
Q 004098 242 FLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGA 321 (774)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~ 321 (774)
+-.... ........++|||.+.|++.+.. ...+..+..||+||+|.-.- .+||--.+.+....
T Consensus 253 Yqvrl~-------~~~s~~t~L~fcTtGvLLr~L~~---~~~l~~vthiivDEVHER~i-~~DflLi~lk~lL~------ 315 (924)
T KOG0920|consen 253 YQVRLE-------SKRSRETRLLFCTTGVLLRRLQS---DPTLSGVTHIIVDEVHERSI-NTDFLLILLKDLLP------ 315 (924)
T ss_pred EEEeee-------cccCCceeEEEecHHHHHHHhcc---CcccccCceeeeeeEEEccC-CcccHHHHHHHHhh------
Confidence 111111 11122369999999999887653 34467899999999998753 33454444333111
Q ss_pred cccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhc
Q 004098 322 NNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKK 401 (774)
Q Consensus 322 ~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~ 401 (774)
.+++.+++++|||...+...+. ++. .+.+....+.-|- . .-|.+++........
T Consensus 316 -----~~p~LkvILMSAT~dae~fs~Y---F~~--~pvi~i~grtfpV-----~-------~~fLEDil~~~~~~~---- 369 (924)
T KOG0920|consen 316 -----RNPDLKVILMSATLDAELFSDY---FGG--CPVITIPGRTFPV-----K-------EYFLEDILSKTGYVS---- 369 (924)
T ss_pred -----hCCCceEEEeeeecchHHHHHH---hCC--CceEeecCCCcch-----H-------HHHHHHHHHHhcccc----
Confidence 1248999999999985554443 332 3333333322221 1 122222222111000
Q ss_pred ccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCC
Q 004098 402 TGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPH 481 (774)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 481 (774)
...... . ....+ . ...........+
T Consensus 370 --~~~~~~---------------~-----------------~~~~~--~-~~~~~~~~~~~~------------------ 394 (924)
T KOG0920|consen 370 --EDDSAR---------------S-----------------GPERS--Q-LRLARLKLWEPE------------------ 394 (924)
T ss_pred --cccccc---------------c-----------------ccccC--c-cccccchhcccc------------------
Confidence 000000 0 00000 0 000000000000
Q ss_pred CCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhC-------CCceEEecCCCCHHHHHHH
Q 004098 482 RDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF-------GVKAAAYNASLPKSQLRRV 554 (774)
Q Consensus 482 ~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~-------g~~~~~~h~~l~~~~R~~~ 554 (774)
....-...++..+-+....+.+|||.+...+...+.+.|... .+-+.++|+.|+..+++.+
T Consensus 395 ------------id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V 462 (924)
T KOG0920|consen 395 ------------IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV 462 (924)
T ss_pred ------------ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh
Confidence 111122334444444445789999999999999999999642 3567899999999999999
Q ss_pred HHHHhcCCceEEEEecccccCcccCCcceEEEeCC--------CC----------CHHHHHHHhhccccCCCcceEEEEe
Q 004098 555 HTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW--------PQ----------SLEAYYQEAGRAGRDGHLADCVLYA 616 (774)
Q Consensus 555 ~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~--------p~----------s~~~y~Qr~GRaGR~G~~g~~il~~ 616 (774)
...--.|.-+||+||++++..|-|++|-+||..+. -. |-.+-.||.|||||. ++|.|+-+|
T Consensus 463 F~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~ 541 (924)
T KOG0920|consen 463 FKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLY 541 (924)
T ss_pred cCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEee
Confidence 99999999999999999999999999999996554 22 445568999999999 899999999
Q ss_pred eCCCCCccCCCCCCH
Q 004098 617 NLSSMPTLLPSRRSE 631 (774)
Q Consensus 617 ~~~~~~~~~~~~~~~ 631 (774)
+......+.......
T Consensus 542 ~~~~~~~~~~~~q~P 556 (924)
T KOG0920|consen 542 TRSRYEKLMLAYQLP 556 (924)
T ss_pred chhhhhhcccccCCh
Confidence 887776665533333
No 139
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.69 E-value=2.6e-16 Score=167.94 Aligned_cols=266 Identities=23% Similarity=0.270 Sum_probs=176.3
Q ss_pred CCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEEEEC
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVC 267 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~T 267 (774)
.+=++-++||.||||.-+ |--+...+..++-.|+|-|+.++++.+++.||++-.++|...... ... ...+..+-+|
T Consensus 191 RkIi~H~GPTNSGKTy~A-Lqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~~~-~~~--~~~a~hvScT 266 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRA-LQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERRFV-LDN--GNPAQHVSCT 266 (700)
T ss_pred heEEEEeCCCCCchhHHH-HHHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceeeec-CCC--CCcccceEEE
Confidence 445667889999999754 333445678999999999999999999999999988887543211 000 1235778888
Q ss_pred hHHHHHHHHHHHHHHHhcCccEEEEeccccccc--CCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHH
Q 004098 268 PETVIRLIKPLQRLAESRGIALFAIDEVHCVSK--WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVR 345 (774)
Q Consensus 268 Pe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~--~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~ 345 (774)
-|++.- .......||||...|.+ .|+.|-..+.-+.. .. +-++.- +.+.
T Consensus 267 VEM~sv----------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~A--dE--------------iHLCGe---psvl 317 (700)
T KOG0953|consen 267 VEMVSV----------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAA--DE--------------IHLCGE---PSVL 317 (700)
T ss_pred EEEeec----------CCceEEEEehhHHhhcCcccchHHHHHHHhhhh--hh--------------hhccCC---chHH
Confidence 887631 12368999999999975 56445544444421 11 111111 1223
Q ss_pred HHHHHHcCCCCCceEEEccCCC-CCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCC
Q 004098 346 EDILKSLHMSKGTKFVLTSFFR-PNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSS 424 (774)
Q Consensus 346 ~~i~~~L~~~~~~~~~~~~~~r-~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (774)
.-+.+.+.+..+...+.. +.| .++...
T Consensus 318 dlV~~i~k~TGd~vev~~-YeRl~pL~v~--------------------------------------------------- 345 (700)
T KOG0953|consen 318 DLVRKILKMTGDDVEVRE-YERLSPLVVE--------------------------------------------------- 345 (700)
T ss_pred HHHHHHHhhcCCeeEEEe-ecccCcceeh---------------------------------------------------
Confidence 322333322222211111 101 000000
Q ss_pred cccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhh
Q 004098 425 SMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLS 504 (774)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~ 504 (774)
..++.
T Consensus 346 ---------------------------------------------------------------------------~~~~~ 350 (700)
T KOG0953|consen 346 ---------------------------------------------------------------------------ETALG 350 (700)
T ss_pred ---------------------------------------------------------------------------hhhhh
Confidence 00011
Q ss_pred hccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCc-eEEecCCCCHHHHHHHHHHHhc--CCceEEEEecccccCcccCCc
Q 004098 505 MLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVK-AAAYNASLPKSQLRRVHTEFHE--NKLEVVVATIAFGMGIDKLNV 581 (774)
Q Consensus 505 ~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~-~~~~h~~l~~~~R~~~~~~F~~--g~~~vLVAT~a~~~GIDip~V 581 (774)
.|... ..|-+| .|-+++..-.+...+.+.|.. +++++|+|+++.|.+--..|.+ ++++|||||||.|||+|+ +|
T Consensus 351 sl~nl-k~GDCv-V~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~I 427 (700)
T KOG0953|consen 351 SLSNL-KPGDCV-VAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NI 427 (700)
T ss_pred hhccC-CCCCeE-EEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ce
Confidence 11111 334443 467788899999999888766 9999999999999999999996 999999999999999999 79
Q ss_pred ceEEEeCCC---------CCHHHHHHHhhccccCCC---cceEEEEe
Q 004098 582 RRIIHYGWP---------QSLEAYYQEAGRAGRDGH---LADCVLYA 616 (774)
Q Consensus 582 ~~VI~~d~p---------~s~~~y~Qr~GRaGR~G~---~g~~il~~ 616 (774)
+.||.|++- -+.....|-+|||||.|. .|.+.++.
T Consensus 428 rRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~ 474 (700)
T KOG0953|consen 428 RRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH 474 (700)
T ss_pred eEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee
Confidence 999999863 467788999999999884 47777775
No 140
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.68 E-value=6.5e-15 Score=175.32 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=76.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccC--CcceEEEeC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKL--NVRRIIHYG 588 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip--~V~~VI~~d 588 (774)
.+++++|+.+|.+..+.+++.|....+.+ ...|.-. .+.+++++|++++-.||++|..|.+|||+| +...||...
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~k 722 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITR 722 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEec
Confidence 46799999999999999999997654444 3334222 256689999998889999999999999997 456677777
Q ss_pred CCC------------------------------CHHHHHHHhhccccCCC-cceEEEEee
Q 004098 589 WPQ------------------------------SLEAYYQEAGRAGRDGH-LADCVLYAN 617 (774)
Q Consensus 589 ~p~------------------------------s~~~y~Qr~GRaGR~G~-~g~~il~~~ 617 (774)
+|- -+..+.|-+||.=|... .|. +++++
T Consensus 723 LPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gv-v~ilD 781 (820)
T PRK07246 723 LPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSA-VLILD 781 (820)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEE-EEEEC
Confidence 662 12345789999999764 454 44444
No 141
>COG4889 Predicted helicase [General function prediction only]
Probab=99.68 E-value=3.8e-16 Score=173.11 Aligned_cols=96 Identities=15% Similarity=0.187 Sum_probs=80.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh-------------CC--CceEEecCCCCHHHHHHHHH---HHhcCCceEEEEecccc
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCG-------------FG--VKAAAYNASLPKSQLRRVHT---EFHENKLEVVVATIAFG 573 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~-------------~g--~~~~~~h~~l~~~~R~~~~~---~F~~g~~~vLVAT~a~~ 573 (774)
..++|-||.+.++...+++.+.. .+ +.+....|.|...+|.+.+. .|..++++||--...++
T Consensus 460 ~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLS 539 (1518)
T COG4889 460 MQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLS 539 (1518)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhh
Confidence 35889999999998888876543 23 34556668999999965554 45678899999999999
Q ss_pred cCcccCCcceEEEeCCCCCHHHHHHHhhccccCC
Q 004098 574 MGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDG 607 (774)
Q Consensus 574 ~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G 607 (774)
+|||+|..+.||.++.-.++.+.+|.+||.-|..
T Consensus 540 EGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 540 EGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred cCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999954
No 142
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.65 E-value=1.5e-15 Score=159.81 Aligned_cols=320 Identities=16% Similarity=0.147 Sum_probs=198.1
Q ss_pred CCCCCHHHHHHHHHHHc---CCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcC----CcEEEE
Q 004098 171 HSSLKNFQKEALSAWLA---HHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHG----VTACFL 243 (774)
Q Consensus 171 ~~~~r~~Q~~ai~~il~---g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~g----i~~~~l 243 (774)
-..+||||...+..+.- .|..|+++|.|+||||+-+-.+.--.+.+||++..---+.||...+..|. -.++.+
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rF 379 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRF 379 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEe
Confidence 35799999999999883 36899999999999998766666668899999998888999999998873 345556
Q ss_pred cCCCChHHHHHHHHcCCceEEEEChHHHHH------HHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHH
Q 004098 244 GSGQPDNKVEQKALRGMYSIIYVCPETVIR------LIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRE 317 (774)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~------ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~ 317 (774)
+++... +...++.|+|+|+.++.. --+....++....|.++++||+|.+...- ||..+.-+.
T Consensus 380 Tsd~Ke------~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~M--FRRVlsiv~---- 447 (776)
T KOG1123|consen 380 TSDAKE------RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKM--FRRVLSIVQ---- 447 (776)
T ss_pred eccccc------cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHH--HHHHHHHHH----
Confidence 654322 244668899999998863 11223445666889999999999985322 555554442
Q ss_pred HhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHH
Q 004098 318 NFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYT 397 (774)
Q Consensus 318 ~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~ 397 (774)
..-.|+||||+-.+.- -+.-|++.-.|.+ |..+...|...-.
T Consensus 448 ------------aHcKLGLTATLvREDd--KI~DLNFLIGPKl------------------------YEAnWmdL~~kGh 489 (776)
T KOG1123|consen 448 ------------AHCKLGLTATLVREDD--KITDLNFLIGPKL------------------------YEANWMDLQKKGH 489 (776)
T ss_pred ------------HHhhccceeEEeeccc--cccccceeecchh------------------------hhccHHHHHhCCc
Confidence 2235899999854321 1222222111111 1111111111000
Q ss_pred hhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccC
Q 004098 398 KKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYG 477 (774)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 477 (774)
...+ +-....-++..+...+||.........
T Consensus 490 --------IA~V---------------------------------qCaEVWCpMt~eFy~eYL~~~t~kr~l-------- 520 (776)
T KOG1123|consen 490 --------IAKV---------------------------------QCAEVWCPMTPEFYREYLRENTRKRML-------- 520 (776)
T ss_pred --------eeEE---------------------------------eeeeeecCCCHHHHHHHHhhhhhhhhe--------
Confidence 0000 000000111222233333321111100
Q ss_pred CCCCCCCCCccchhhccccCchhHhhhhccCC--CCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHH
Q 004098 478 HSPHRDRDTDRSFERTDLLNKPAERLSMLQEP--LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVH 555 (774)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~--~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~ 555 (774)
+.. +...+...-++|.+. -.+.++|||..+.-...+.|-.|.+ -.++|..++.+|.+++
T Consensus 521 ------------Lyv--MNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~IL 581 (776)
T KOG1123|consen 521 ------------LYV--MNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKIL 581 (776)
T ss_pred ------------eee--cCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHH
Confidence 000 111111111111111 1566999999998777777666643 4678999999999999
Q ss_pred HHHhc-CCceEEEEecccccCcccCCcceEEEeCCC-CCHHHHHHHhhccccCCC
Q 004098 556 TEFHE-NKLEVVVATIAFGMGIDKLNVRRIIHYGWP-QSLEAYYQEAGRAGRDGH 608 (774)
Q Consensus 556 ~~F~~-g~~~vLVAT~a~~~GIDip~V~~VI~~d~p-~s~~~y~Qr~GRaGR~G~ 608 (774)
+.|+. .+++.+.-..++...||+|..+++|+...- .|-..=.||.||.-|+-+
T Consensus 582 qnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 582 QNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK 636 (776)
T ss_pred HhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhh
Confidence 99994 578888889999999999999999976543 356667899998888653
No 143
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.64 E-value=1.4e-15 Score=149.92 Aligned_cols=151 Identities=25% Similarity=0.277 Sum_probs=102.2
Q ss_pred CCCHHHHHHHHHHHc-------CCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEc-
Q 004098 173 SLKNFQKEALSAWLA-------HHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLG- 244 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~-------g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~- 244 (774)
+||++|.+++..+++ .+++++.||||+|||++++..+.....++||++|+++|+.|+...+..++.......
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~ 82 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNFFE 82 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 589999999999984 589999999999999998755543333999999999999999999966543221111
Q ss_pred -------------CCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHH---------HHHHhcCccEEEEecccccccCC
Q 004098 245 -------------SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQ---------RLAESRGIALFAIDEVHCVSKWG 302 (774)
Q Consensus 245 -------------~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~---------~~~~~~~i~~iVIDEaH~l~~~g 302 (774)
.................+++++|.+++........ ........++||+||||++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~-- 160 (184)
T PF04851_consen 83 KSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPS-- 160 (184)
T ss_dssp --GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHH--
T ss_pred cccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCC--
Confidence 11111112233445667999999999986654211 112235689999999999853
Q ss_pred CCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCC
Q 004098 303 HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341 (774)
Q Consensus 303 ~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~ 341 (774)
...+..+.. +. ...+|+|||||.
T Consensus 161 ---~~~~~~i~~----~~---------~~~~l~lTATp~ 183 (184)
T PF04851_consen 161 ---DSSYREIIE----FK---------AAFILGLTATPF 183 (184)
T ss_dssp ---HHHHHHHHH----SS---------CCEEEEEESS-S
T ss_pred ---HHHHHHHHc----CC---------CCeEEEEEeCcc
Confidence 222555533 22 677999999985
No 144
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.63 E-value=1.7e-14 Score=157.62 Aligned_cols=420 Identities=15% Similarity=0.139 Sum_probs=236.8
Q ss_pred CCCHHHHHHHHHHHc-----CCCEEEEecCCCchHHHHHHhhhcc-------------CCeEEEEccchHHHHHHHHHHH
Q 004098 173 SLKNFQKEALSAWLA-----HHDCLVLAATGSGKSLCFQIPALLT-------------GKVVVVISPLISLMHDQCSKLS 234 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~-----g~d~lv~apTGsGKTl~~~lpal~~-------------~~~~LVvsPt~~L~~qq~~~l~ 234 (774)
.+-|.|..++.|++- +.-.|+....|.|||++..-.++.. ...+||||| .+|++||..++.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P-aSli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP-ASLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc-HHHHHHHHHHHH
Confidence 467899999999873 3458999999999999755444421 225999999 599999999987
Q ss_pred hc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHH----HHHHH--HHHHHhcCccEEEEecccccccCCCC
Q 004098 235 KH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIR----LIKPL--QRLAESRGIALFAIDEVHCVSKWGHD 304 (774)
Q Consensus 235 ~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~----ll~~~--~~~~~~~~i~~iVIDEaH~l~~~g~~ 304 (774)
+. -+++..++ |....+...+.+ ..|+|||+|+.-+.+ -+... ...+..-.|..||+||||.+-+....
T Consensus 404 ~rl~~n~LsV~~~H-G~n~r~i~~~~L-~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq 481 (901)
T KOG4439|consen 404 RRLEQNALSVYLYH-GPNKREISAKEL-RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQ 481 (901)
T ss_pred HHHhhcceEEEEec-CCccccCCHHHH-hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchh
Confidence 73 34555444 444333333333 358999999986654 11100 11112234889999999999765433
Q ss_pred cHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEE-----------------------
Q 004098 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFV----------------------- 361 (774)
Q Consensus 305 fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~----------------------- 361 (774)
-.....+|. ..-.-++|+||-.+..=|++..|.+...+.+-
T Consensus 482 ~S~AVC~L~----------------a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g~~rlnll 545 (901)
T KOG4439|consen 482 CSKAVCKLS----------------AKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGGANRLNLL 545 (901)
T ss_pred HHHHHHHHh----------------hcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccchhhhhhh
Confidence 333333332 33457999999887766666655433211111
Q ss_pred ------Ec------c----CCCCCcEEEEeecCCccc-----hhhhHhHHHHHHHHHhhhcccccccccCCC-----cCC
Q 004098 362 ------LT------S----FFRPNLRFSVKHSKTSSR-----ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQ-----DLD 415 (774)
Q Consensus 362 ------~~------~----~~r~~l~~~v~~~~~~~~-----~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-----~~~ 415 (774)
+. + ..-|+..+.+........ ..+...-+.++..|...+........+.+. ..+
T Consensus 546 ~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~~~~~~~~~ 625 (901)
T KOG4439|consen 546 TKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQSRNRFIGGHD 625 (901)
T ss_pred hhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCccccchhccccc
Confidence 00 0 011223333332221111 111222222333322222211111111000 000
Q ss_pred Cc---cCccCCCcc--ccc----------------ccCCCCCCCCCCCCcc---CC-CCC-CccchhhhhhhcCCCcccc
Q 004098 416 DQ---SDTSSSSSM--SEE----------------SRISPNIGDGYYDDED---VG-NSP-MGKEMSVEFLENDSVDDWD 469 (774)
Q Consensus 416 ~~---~~~~~~~~~--~~~----------------~~~~~~~~~~~~~~~~---~~-~~~-~~~~~~~~~l~~~~~~~~~ 469 (774)
.. ...++...+ +.. ..+. .+.....+... .+ ... ....-...+.+-. +...
T Consensus 626 e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~-~~~k~~ld~~~~~~~g~~~sde~~~e~~~l~el~--k~~~ 702 (901)
T KOG4439|consen 626 EFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHF-GLLKAALDPEEFQMNGGDDSDEEQLEEDNLAELE--KNDE 702 (901)
T ss_pred cccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCc-chhccccCHHHhhhcCcchhhhhhhhhhHHHhhh--hccc
Confidence 00 000000000 000 0000 00000000000 00 000 0000000000000 0000
Q ss_pred cccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCC--CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCC
Q 004098 470 VACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL--EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLP 547 (774)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~--~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~ 547 (774)
..|.....+ ......+.+.++....+.|....+..+...+ ...+++|..+.......+...|.+.|.....+||...
T Consensus 703 T~~~~D~~e-d~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~ 781 (901)
T KOG4439|consen 703 TDCSDDNCE-DLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVL 781 (901)
T ss_pred ccccccccc-cccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccc
Confidence 111111100 1123355666777777888887777776653 3458888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHh--cCCce-EEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEE
Q 004098 548 KSQLRRVHTEFH--ENKLE-VVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (774)
Q Consensus 548 ~~~R~~~~~~F~--~g~~~-vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~ 615 (774)
.++|+.+++.|. +|..+ .|++-.+.|.|||+-..+++|..|+-||+.-=.|...|.-|.|+...++++
T Consensus 782 vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 782 VKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred hhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 999999999997 45445 456678899999999999999999999999999999999999999998876
No 145
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.60 E-value=4.5e-13 Score=152.76 Aligned_cols=97 Identities=18% Similarity=0.096 Sum_probs=72.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc----CCceEEEEecccccCccc--------
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE----NKLEVVVATIAFGMGIDK-------- 578 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~----g~~~vLVAT~a~~~GIDi-------- 578 (774)
..|+++|-+.|.+..+.+++.|...---...+.|..+ .+...+++|+. |.-.||++|..|.+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 4678999999999999999999764222344455432 35668888886 478999999999999999
Q ss_pred --CCcceEEEeCCCCC-------------------------HHHHHHHhhccccCCCc
Q 004098 579 --LNVRRIIHYGWPQS-------------------------LEAYYQEAGRAGRDGHL 609 (774)
Q Consensus 579 --p~V~~VI~~d~p~s-------------------------~~~y~Qr~GRaGR~G~~ 609 (774)
..++.||..-+|-. ...+.|-+||.=|....
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D 604 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDM 604 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCC
Confidence 34788998887721 23456888888887653
No 146
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.60 E-value=6.8e-14 Score=147.14 Aligned_cols=120 Identities=14% Similarity=0.097 Sum_probs=100.0
Q ss_pred CchhHhhhhcc---CCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC-Cce-EEEEecc
Q 004098 497 NKPAERLSMLQ---EPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHEN-KLE-VVVATIA 571 (774)
Q Consensus 497 ~k~~~ll~~L~---~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g-~~~-vLVAT~a 571 (774)
.|.+.+.+.|. +.-...+.|||.+.....+-+.-.|.+.|+.|..+.|+|++..|..+++.|+++ .+. +||+-.+
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkA 699 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKA 699 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEecc
Confidence 34444444432 222334899999999999999999999999999999999999999999999976 444 6788899
Q ss_pred cccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCc--ceEEEEe
Q 004098 572 FGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL--ADCVLYA 616 (774)
Q Consensus 572 ~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~--g~~il~~ 616 (774)
+|.-+|+.....|+.+|+=|++.--.|...|.+|.|+. =.++.|+
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~ 746 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFC 746 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEee
Confidence 99999999999999999999999999999999999974 4445554
No 147
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.58 E-value=1.7e-12 Score=157.61 Aligned_cols=107 Identities=14% Similarity=0.132 Sum_probs=79.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC--ceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCC--cceEEE
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGV--KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLN--VRRIIH 586 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~--~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~--V~~VI~ 586 (774)
.+++++||.+|.+..+.+++.|..... ....+.=+++...|.+++++|+.++-.||++|..|.+|||+|+ ++.||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457899999999999999999975422 1222222444456889999999988899999999999999996 478998
Q ss_pred eCCCCC------------------------------HHHHHHHhhccccCCCcceEEEEee
Q 004098 587 YGWPQS------------------------------LEAYYQEAGRAGRDGHLADCVLYAN 617 (774)
Q Consensus 587 ~d~p~s------------------------------~~~y~Qr~GRaGR~G~~g~~il~~~ 617 (774)
..+|-. +..+.|.+||.=|....--++++++
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD 891 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLD 891 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEec
Confidence 887631 2234688899988775433455544
No 148
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.57 E-value=8.3e-15 Score=123.87 Aligned_cols=81 Identities=33% Similarity=0.519 Sum_probs=78.1
Q ss_pred HHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccC
Q 004098 527 SIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRD 606 (774)
Q Consensus 527 ~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~ 606 (774)
.++++|...++.+..+||++++++|..+++.|.++...|||+|+++++|+|+|+++.||.++.|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 57788888899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 004098 607 G 607 (774)
Q Consensus 607 G 607 (774)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 149
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.57 E-value=1.5e-13 Score=168.91 Aligned_cols=411 Identities=14% Similarity=0.143 Sum_probs=235.3
Q ss_pred CCCCHHHHHHHHHHHc-----CCCEEEEecCCCchHHHHH--Hhhh-cc----CCeEEEEccchHHHHHHHHHHHhcC--
Q 004098 172 SSLKNFQKEALSAWLA-----HHDCLVLAATGSGKSLCFQ--IPAL-LT----GKVVVVISPLISLMHDQCSKLSKHG-- 237 (774)
Q Consensus 172 ~~~r~~Q~~ai~~il~-----g~d~lv~apTGsGKTl~~~--lpal-~~----~~~~LVvsPt~~L~~qq~~~l~~~g-- 237 (774)
..+++||.+.++++.. +.+.++...+|.|||+..+ ++.+ .. .+.++|++|+ +++.+|.+++.++-
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCcc
Confidence 4689999999988652 6788999999999997432 2221 11 4689999996 89999999998873
Q ss_pred Cc-EEEEcCCCCh----HHHHHHHHcCC----ceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHH
Q 004098 238 VT-ACFLGSGQPD----NKVEQKALRGM----YSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPD 308 (774)
Q Consensus 238 i~-~~~l~~~~~~----~~~~~~~~~~~----~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~ 308 (774)
.+ +....+.... ........... ++++++|.+.+.... .....+....+.++|+||||.+.... ...
T Consensus 416 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~-~~~~~l~~~~~~~~v~DEa~~ikn~~---s~~ 491 (866)
T COG0553 416 LRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFL-VDHGGLKKIEWDRVVLDEAHRIKNDQ---SSE 491 (866)
T ss_pred ccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhh-hhHHHHhhceeeeeehhhHHHHhhhh---hHH
Confidence 34 3344443321 22233333322 799999999887632 12445556779999999999986422 223
Q ss_pred HHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcC-CCCCceEEE-------ccCCCCCcEEEEeecCCc
Q 004098 309 YRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH-MSKGTKFVL-------TSFFRPNLRFSVKHSKTS 380 (774)
Q Consensus 309 ~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~-~~~~~~~~~-------~~~~r~~l~~~v~~~~~~ 380 (774)
...+.. +. ....++||+||.++...+++..+. +.. +..+. ..|..+......... ..
T Consensus 492 ~~~l~~----~~---------~~~~~~LtgTPlen~l~eL~sl~~~f~~-p~~~~~~~~~f~~~~~~~~~~~~~~~~-~~ 556 (866)
T COG0553 492 GKALQF----LK---------ALNRLDLTGTPLENRLGELWSLLQEFLN-PGLLGTSFAIFTRLFEKPIQAEEDIGP-LE 556 (866)
T ss_pred HHHHHH----Hh---------hcceeeCCCChHhhhHHHHHHHHHHHhC-CccccchHHHHHHHHhhhhhhcccccc-hh
Confidence 333322 22 334589999998888888888886 432 22221 111111111111000 00
Q ss_pred cchhhhHhHHHHHHHHHhhhccccc-ccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccC-------------
Q 004098 381 SRASYKKDFCQLIDIYTKKKKTGEK-EKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDV------------- 446 (774)
Q Consensus 381 ~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 446 (774)
........++.++..+..++..... ...-++......... .+.. .....|.....
T Consensus 557 ~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~----~l~~-------~q~~~y~~~~~~~~~~~~~~~~~~ 625 (866)
T COG0553 557 ARELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLEC----ELSE-------EQRELYEALLEGAEKNQQLLEDLE 625 (866)
T ss_pred hHHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhh----cccH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111133444444333322221 111111111100000 0000 00000000000
Q ss_pred CCCCC--ccc-hhhhhhhcCCCcccccccccccCCCCCCCCCCcc-------------ch-hhcccc-CchhHhhhhc-c
Q 004098 447 GNSPM--GKE-MSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDR-------------SF-ERTDLL-NKPAERLSML-Q 507 (774)
Q Consensus 447 ~~~~~--~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~~~~~~-~k~~~ll~~L-~ 507 (774)
..... ... .....+. .+......|.+.............. .. ...... .|...+.++| .
T Consensus 626 ~~~~~~~~~~~~~~~~l~--~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~ 703 (866)
T COG0553 626 KADSDENRIGDSELNILA--LLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLD 703 (866)
T ss_pred hhccccccccchhhHHHH--HHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHH
Confidence 00000 000 0000000 0011112233222211110000000 00 001111 4555555566 2
Q ss_pred CCCC-CC--cEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC--CceEEEEecccccCcccCCcc
Q 004098 508 EPLE-DG--LTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHEN--KLEVVVATIAFGMGIDKLNVR 582 (774)
Q Consensus 508 ~~~~-~~--~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g--~~~vLVAT~a~~~GIDip~V~ 582 (774)
.... +. ++|||++.....+.+..+|...++....++|.++.+.|...+++|.++ ..-++++|.++|.|||....+
T Consensus 704 ~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~ 783 (866)
T COG0553 704 KLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGAD 783 (866)
T ss_pred HHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccc
Confidence 3333 33 899999999999999999999999999999999999999999999986 567888889999999999999
Q ss_pred eEEEeCCCCCHHHHHHHhhccccCCCcceEEEE
Q 004098 583 RIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (774)
Q Consensus 583 ~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~ 615 (774)
.||+||..|++....|.+.|+.|.|+...+.+|
T Consensus 784 ~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 784 TVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred eEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 999999999999999999999999999888776
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=2e-13 Score=157.92 Aligned_cols=122 Identities=21% Similarity=0.183 Sum_probs=100.2
Q ss_pred CchhHhhhhccCCC-CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccC
Q 004098 497 NKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575 (774)
Q Consensus 497 ~k~~~ll~~L~~~~-~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~G 575 (774)
.|...+++.+.+.. .+.|+||-+.|+...+.|++.|...|++...+++.....|-.-+-+.=+.| .|-|||+++|||
T Consensus 612 eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRG 689 (1112)
T PRK12901 612 EKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRG 689 (1112)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCC
Confidence 45566666665543 456999999999999999999999999988888876655544444444455 689999999999
Q ss_pred cccC---Cc-----ceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 576 IDKL---NV-----RRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 576 IDip---~V-----~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
-||. .| -+||-...+.|..-.-|-.|||||.|.||.+.+|++..|
T Consensus 690 TDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 690 TDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred cCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 9996 22 489999999999999999999999999999999998765
No 151
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.50 E-value=1.8e-13 Score=128.04 Aligned_cols=136 Identities=27% Similarity=0.380 Sum_probs=95.1
Q ss_pred CCEEEEecCCCchHHHHHHhhhc-----cCCeEEEEccchHHHHHHHHHHHhcC---CcEEEEcCCCChHHHHHHHHcCC
Q 004098 189 HDCLVLAATGSGKSLCFQIPALL-----TGKVVVVISPLISLMHDQCSKLSKHG---VTACFLGSGQPDNKVEQKALRGM 260 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpal~-----~~~~~LVvsPt~~L~~qq~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~~~ 260 (774)
+++++.+|||+|||.++...+.. ..++++|++|++.|++|+...+.... +.+..+.+...... ........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 79 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQ-QEKLLSGK 79 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhH-HHHHhcCC
Confidence 46899999999999988766653 35899999999999999999988864 66666666554433 22334567
Q ss_pred ceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccC
Q 004098 261 YSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATA 340 (774)
Q Consensus 261 ~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~ 340 (774)
.+|+++|++++...+.. .......++++||||+|.+.... +.... ...... .....+++++||||
T Consensus 80 ~~i~i~t~~~~~~~~~~--~~~~~~~~~~iiiDE~h~~~~~~--~~~~~--~~~~~~---------~~~~~~~i~~saTp 144 (144)
T cd00046 80 TDIVVGTPGRLLDELER--LKLSLKKLDLLILDEAHRLLNQG--FGLLG--LKILLK---------LPKDRQVLLLSATP 144 (144)
T ss_pred CCEEEECcHHHHHHHHc--CCcchhcCCEEEEeCHHHHhhcc--hHHHH--HHHHhh---------CCccceEEEEeccC
Confidence 89999999988765442 11224568999999999997532 22221 001111 12268899999996
No 152
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.50 E-value=7.3e-13 Score=152.79 Aligned_cols=311 Identities=19% Similarity=0.272 Sum_probs=200.5
Q ss_pred CCCHHHHHHHHHHHc-CCCEEEEecCCCchHHHHHHhhhcc--CCeEEEEccchHHHHHHHHHHHh-----cCCcEEEEc
Q 004098 173 SLKNFQKEALSAWLA-HHDCLVLAATGSGKSLCFQIPALLT--GKVVVVISPLISLMHDQCSKLSK-----HGVTACFLG 244 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~-g~d~lv~apTGsGKTl~~~lpal~~--~~~~LVvsPt~~L~~qq~~~l~~-----~gi~~~~l~ 244 (774)
.+.|+|.++++.+.+ +.+++|.+|+|+|||.|+-+..+.+ .+++++|+|.-+.+..++..+.+ .|...+.++
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ 1222 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLT 1222 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecC
Confidence 458899999998876 5679999999999999999888864 57999999998887666665544 267788887
Q ss_pred CCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc-CCCCcHHHHHHHHHHHHHhcccc
Q 004098 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK-WGHDFRPDYRRLSVLRENFGANN 323 (774)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~-~g~~fr~~~~~l~~l~~~~~~~~ 323 (774)
|....... +...-+|+|+||+.+..+ . ....++++|.||.|.+.+ .|..+.-... +..+...+.
T Consensus 1223 ge~s~~lk----l~~~~~vii~tpe~~d~l-q------~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~--- 1287 (1674)
T KOG0951|consen 1223 GETSLDLK----LLQKGQVIISTPEQWDLL-Q------SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLE--- 1287 (1674)
T ss_pred CccccchH----HhhhcceEEechhHHHHH-h------hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHH---
Confidence 76654321 222349999999988543 2 345689999999999974 3322221111 222222222
Q ss_pred cccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCC-CcEEEEeecCCccchhhhHhHHHHHHHHHhhhcc
Q 004098 324 LKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP-NLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKT 402 (774)
Q Consensus 324 ~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~-~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 402 (774)
.++++++||...+.. .++ ++......+-.....|| ++...+...... .+...+..+.+....
T Consensus 1288 -----k~ir~v~ls~~lana--~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~---~~~~~~~am~~~~~~---- 1350 (1674)
T KOG0951|consen 1288 -----KKIRVVALSSSLANA--RDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDIS---HFESRMLAMTKPTYT---- 1350 (1674)
T ss_pred -----hheeEEEeehhhccc--hhh---ccccccceeecCcccCCCceeEEEEEeccc---hhHHHHHHhhhhHHH----
Confidence 278899999776432 222 66654444433444444 344444432221 111111111110000
Q ss_pred cccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCC
Q 004098 403 GEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHR 482 (774)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 482 (774)
T Consensus 1351 -------------------------------------------------------------------------------- 1350 (1674)
T KOG0951|consen 1351 -------------------------------------------------------------------------------- 1350 (1674)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHh----------------------CCCceE
Q 004098 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG----------------------FGVKAA 540 (774)
Q Consensus 483 ~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~----------------------~g~~~~ 540 (774)
..........++|||+++|+.|..++..|-. ...+..
T Consensus 1351 ---------------------ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~g 1409 (1674)
T KOG0951|consen 1351 ---------------------AIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHG 1409 (1674)
T ss_pred ---------------------HHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccc
Confidence 0000112456899999999999988875432 011122
Q ss_pred EecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEe-----C------CCCCHHHHHHHhhccccCCCc
Q 004098 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHY-----G------WPQSLEAYYQEAGRAGRDGHL 609 (774)
Q Consensus 541 ~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~-----d------~p~s~~~y~Qr~GRaGR~G~~ 609 (774)
.=|-+|+..+..-+...|..|.++|+|...- -+|+-... ..||-+ | .+.++....|+.|+|.| .
T Consensus 1410 vg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~ 1484 (1674)
T KOG0951|consen 1410 VGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---A 1484 (1674)
T ss_pred ccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC---C
Confidence 2288999999999999999999999998876 77776643 444432 2 35678999999999998 4
Q ss_pred ceEEEEeeCCCC
Q 004098 610 ADCVLYANLSSM 621 (774)
Q Consensus 610 g~~il~~~~~~~ 621 (774)
|.|+++....+.
T Consensus 1485 ~k~vi~~~~~~k 1496 (1674)
T KOG0951|consen 1485 GKCVIMCHTPKK 1496 (1674)
T ss_pred ccEEEEecCchH
Confidence 779999875553
No 153
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.47 E-value=1.2e-11 Score=130.59 Aligned_cols=317 Identities=16% Similarity=0.171 Sum_probs=187.9
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHH-------HHHhhhccCCeEEEEccchHHH
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLC-------FQIPALLTGKVVVVISPLISLM 226 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~-------~~lpal~~~~~~LVvsPt~~L~ 226 (774)
..++.....++|++.... ..+.++.+-+..+.+++-+++++.||+|||.- |.++. ..-+...-|.|--+
T Consensus 29 ~~p~s~rY~~ilk~R~~L-Pvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~---~~~v~CTQprrvaa 104 (699)
T KOG0925|consen 29 GKPYSQRYYDILKKRREL-PVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH---LTGVACTQPRRVAA 104 (699)
T ss_pred CCcCcHHHHHHHHHHhcC-chHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh---ccceeecCchHHHH
Confidence 446677788888876544 35666777777788888899999999999952 22332 25566677887776
Q ss_pred HHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCc
Q 004098 227 HDQCSKLSK-HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF 305 (774)
Q Consensus 227 ~qq~~~l~~-~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~f 305 (774)
.+....... ..+....-.|.... ....-....-+-|+|-++|++-. ...-.+.+++.||+||||.-+ .
T Consensus 105 msva~RVadEMDv~lG~EVGysIr---fEdC~~~~T~Lky~tDgmLlrEa---ms~p~l~~y~viiLDeahERt-----l 173 (699)
T KOG0925|consen 105 MSVAQRVADEMDVTLGEEVGYSIR---FEDCTSPNTLLKYCTDGMLLREA---MSDPLLGRYGVIILDEAHERT-----L 173 (699)
T ss_pred HHHHHHHHHHhccccchhcccccc---ccccCChhHHHHHhcchHHHHHH---hhCcccccccEEEechhhhhh-----H
Confidence 666655543 22221111110000 00000001112345555554311 122235678999999999653 1
Q ss_pred HHHH--HHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccch
Q 004098 306 RPDY--RRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383 (774)
Q Consensus 306 r~~~--~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~ 383 (774)
..+. .-|..++.. +++..++.+|||+...-.+..+.. .+.+.......-.+.|. .....+
T Consensus 174 ATDiLmGllk~v~~~---------rpdLk~vvmSatl~a~Kfq~yf~n-----~Pll~vpg~~PvEi~Yt----~e~erD 235 (699)
T KOG0925|consen 174 ATDILMGLLKEVVRN---------RPDLKLVVMSATLDAEKFQRYFGN-----APLLAVPGTHPVEIFYT----PEPERD 235 (699)
T ss_pred HHHHHHHHHHHHHhh---------CCCceEEEeecccchHHHHHHhCC-----CCeeecCCCCceEEEec----CCCChh
Confidence 1121 122222222 238889999999977665544332 23333322111222222 111222
Q ss_pred hhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcC
Q 004098 384 SYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND 463 (774)
Q Consensus 384 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (774)
.+...++.++++...
T Consensus 236 ylEaairtV~qih~~----------------------------------------------------------------- 250 (699)
T KOG0925|consen 236 YLEAAIRTVLQIHMC----------------------------------------------------------------- 250 (699)
T ss_pred HHHHHHHHHHHHHhc-----------------------------------------------------------------
Confidence 223333333322110
Q ss_pred CCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhC--------
Q 004098 464 SVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF-------- 535 (774)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~-------- 535 (774)
-..|-++||....++.+..++.+...
T Consensus 251 ----------------------------------------------ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~ 284 (699)
T KOG0925|consen 251 ----------------------------------------------EEPGDILVFLTGEEEIEDACRKISREVDNLGPQV 284 (699)
T ss_pred ----------------------------------------------cCCCCEEEEecCHHHHHHHHHHHHHHHHhhcccc
Confidence 04567999999999999999888742
Q ss_pred -CCceEEecCCCCHHHHHHHHHHHh---cC--CceEEEEecccccCcccCCcceEEEeCC------------------CC
Q 004098 536 -GVKAAAYNASLPKSQLRRVHTEFH---EN--KLEVVVATIAFGMGIDKLNVRRIIHYGW------------------PQ 591 (774)
Q Consensus 536 -g~~~~~~h~~l~~~~R~~~~~~F~---~g--~~~vLVAT~a~~~GIDip~V~~VI~~d~------------------p~ 591 (774)
.+++.++| +.++.++++--- +| .-+|+|+|++++..+-++.|.+||.-++ |-
T Consensus 285 g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PI 360 (699)
T KOG0925|consen 285 GPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPI 360 (699)
T ss_pred CCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccc
Confidence 35788888 444444443221 12 3479999999999999999999997665 55
Q ss_pred CHHHHHHHhhccccCCCcceEEEEeeCC
Q 004098 592 SLEAYYQEAGRAGRDGHLADCVLYANLS 619 (774)
Q Consensus 592 s~~~y~Qr~GRaGR~G~~g~~il~~~~~ 619 (774)
|-.+-.||.|||||. ++|.|.-+|+..
T Consensus 361 SkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 361 SKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred hHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 777889999999998 799999998744
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.44 E-value=2.5e-11 Score=143.83 Aligned_cols=104 Identities=15% Similarity=0.159 Sum_probs=77.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-ceEEecCCCCHHHHHHHHHHHhcCCc-eEEEEecccccCcccCC--cceEEE
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGV-KAAAYNASLPKSQLRRVHTEFHENKL-EVVVATIAFGMGIDKLN--VRRIIH 586 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~-~~~~~h~~l~~~~R~~~~~~F~~g~~-~vLVAT~a~~~GIDip~--V~~VI~ 586 (774)
.+++++||++|.+..+.+++.|..... .....+|..+ +...++.|+.+.- -++|+|..+.+|||+|+ .+.||.
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI 554 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVI 554 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEE
Confidence 345899999999999999999987654 2445555444 4478888886544 89999999999999986 478998
Q ss_pred eCCCC------------------------------CHHHHHHHhhccccCCCcceEEEEee
Q 004098 587 YGWPQ------------------------------SLEAYYQEAGRAGRDGHLADCVLYAN 617 (774)
Q Consensus 587 ~d~p~------------------------------s~~~y~Qr~GRaGR~G~~g~~il~~~ 617 (774)
.++|. -+....|.+||.=|.-...-++++++
T Consensus 555 ~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD 615 (654)
T COG1199 555 VGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLD 615 (654)
T ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEec
Confidence 88863 24456899999999544333333433
No 155
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.43 E-value=6.5e-12 Score=145.24 Aligned_cols=136 Identities=18% Similarity=0.129 Sum_probs=105.6
Q ss_pred ecCCCchHHHHHHhh---hccCCeEEEEccchHHHHHHHHHHHh-cC-CcEEEEcCCCChHHH---HHHHHcCCceEEEE
Q 004098 195 AATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSK-HG-VTACFLGSGQPDNKV---EQKALRGMYSIIYV 266 (774)
Q Consensus 195 apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~L~~qq~~~l~~-~g-i~~~~l~~~~~~~~~---~~~~~~~~~~Ilv~ 266 (774)
+.+|||||.+|+-.+ +..++.+||++|.++|..|..+.|++ || ..++.++++.+..+. +..+..|..+|+|+
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViG 246 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVG 246 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEE
Confidence 346999999997554 55788999999999999999999987 56 778899999887544 34456788999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCccEEEEeccccccc-CCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHH
Q 004098 267 CPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK-WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVR 345 (774)
Q Consensus 267 TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~-~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~ 345 (774)
|-.-+ +..+.++.+|||||-|--+- .....+...+.+..++.... +.++|+-|||++-+..
T Consensus 247 tRSAv---------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~---------~~~lvLgSaTPSles~ 308 (665)
T PRK14873 247 TRSAV---------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQH---------GCALLIGGHARTAEAQ 308 (665)
T ss_pred cceeE---------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHc---------CCcEEEECCCCCHHHH
Confidence 96632 34567899999999997642 12224555677777777765 8999999999998876
Q ss_pred HHH
Q 004098 346 EDI 348 (774)
Q Consensus 346 ~~i 348 (774)
..+
T Consensus 309 ~~~ 311 (665)
T PRK14873 309 ALV 311 (665)
T ss_pred HHH
Confidence 544
No 156
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.43 E-value=1.2e-10 Score=137.26 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=73.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHh----cCCceEEEEecccccCcccCC--cceE
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCGF-GVKAAAYNASLPKSQLRRVHTEFH----ENKLEVVVATIAFGMGIDKLN--VRRI 584 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~F~----~g~~~vLVAT~a~~~GIDip~--V~~V 584 (774)
.+.++||++|.+..+.+++.|... +.. ...++. ..|.+++++|+ .++-.||++|..|.+|||+|+ ++.|
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 345899999999999999999743 333 334553 24677887776 467789999999999999986 7889
Q ss_pred EEeCCCC----CH--------------------------HHHHHHhhccccCCCcceEEEEee
Q 004098 585 IHYGWPQ----SL--------------------------EAYYQEAGRAGRDGHLADCVLYAN 617 (774)
Q Consensus 585 I~~d~p~----s~--------------------------~~y~Qr~GRaGR~G~~g~~il~~~ 617 (774)
|...+|- ++ ..+.|.+||.=|....--++++++
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD 672 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILD 672 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEc
Confidence 9988773 11 123588899988754433444444
No 157
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.39 E-value=4.8e-11 Score=134.11 Aligned_cols=125 Identities=18% Similarity=0.128 Sum_probs=105.8
Q ss_pred hhccccCchhHhhhhccCCCC-CCcEEEEeCchHHHHHHHHHHHh----------------------CCCceEEecCCCC
Q 004098 491 ERTDLLNKPAERLSMLQEPLE-DGLTIIYVPTRKETLSIAKYLCG----------------------FGVKAAAYNASLP 547 (774)
Q Consensus 491 ~~~~~~~k~~~ll~~L~~~~~-~~~~IIF~~sr~~~~~l~~~L~~----------------------~g~~~~~~h~~l~ 547 (774)
..+.-+.|...|+++|...-. +.+.|||.++....+-|..+|.. .|.....+.|...
T Consensus 1120 ~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~ 1199 (1567)
T KOG1015|consen 1120 EVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTT 1199 (1567)
T ss_pred hhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCccc
Confidence 344455677777777765433 34999999999999999999974 3556788899999
Q ss_pred HHHHHHHHHHHhcC----CceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEE
Q 004098 548 KSQLRRVHTEFHEN----KLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (774)
Q Consensus 548 ~~~R~~~~~~F~~g----~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~ 615 (774)
..+|+...++|.+- ---+||+|.|++.|||+-..+.||.||..||+.--.|-|=|+-|.|+..-|++|
T Consensus 1200 s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1200 SQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 99999999999853 123899999999999999999999999999999999999999999999999887
No 158
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.38 E-value=1.1e-10 Score=138.64 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=59.7
Q ss_pred hcCCCCCCHHHHHHHHHHH----cCCCEEEEecCCCchHHHHHHhhhc----cC--CeEEEEccchHHHHHHHHHHHh
Q 004098 168 HFGHSSLKNFQKEALSAWL----AHHDCLVLAATGSGKSLCFQIPALL----TG--KVVVVISPLISLMHDQCSKLSK 235 (774)
Q Consensus 168 ~~g~~~~r~~Q~~ai~~il----~g~d~lv~apTGsGKTl~~~lpal~----~~--~~~LVvsPt~~L~~qq~~~l~~ 235 (774)
+|.|..+||.|.+.+..+. .+.++++.+|||+|||++.+.|+|. .+ .++++.+.|.+=+.|.+++|++
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 6889888999999887765 4889999999999999998888873 23 6899999999999999999988
No 159
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.32 E-value=3.3e-10 Score=132.42 Aligned_cols=92 Identities=24% Similarity=0.313 Sum_probs=71.9
Q ss_pred EEEEeCchHHHHHHHHHHHhC------CCceEEecCCCCHHHHHHHHHHH----------------------hc----CC
Q 004098 515 TIIYVPTRKETLSIAKYLCGF------GVKAAAYNASLPKSQLRRVHTEF----------------------HE----NK 562 (774)
Q Consensus 515 ~IIF~~sr~~~~~l~~~L~~~------g~~~~~~h~~l~~~~R~~~~~~F----------------------~~----g~ 562 (774)
++|-+.+++.+-.++..|... .+.+.+||+..+...|..+.+.. .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 788889999999999988753 34588999998777776655432 12 46
Q ss_pred ceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCc
Q 004098 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL 609 (774)
Q Consensus 563 ~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~ 609 (774)
..|+|||.+.+.|+|+ +.+.+| --|.++.+.+|++||+.|.|..
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhcccccccC
Confidence 7899999999999998 345444 3477899999999999998854
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.19 E-value=1.6e-09 Score=123.81 Aligned_cols=328 Identities=18% Similarity=0.170 Sum_probs=185.9
Q ss_pred EEEEecCCCchHHHHHHhhh----ccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEEEE
Q 004098 191 CLVLAATGSGKSLCFQIPAL----LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYV 266 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpal----~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~ 266 (774)
.+|.+|+|+|||.+..-+.. .....+|+|+-.++|+.+....++..++.-...+.+..... +....++-+++
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~----i~~~~~~rLiv 127 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYI----IDGRPYDRLIV 127 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeecccccc----ccccccCeEEE
Confidence 58899999999976544432 24789999999999999999999998775333333332211 11124578888
Q ss_pred ChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHH
Q 004098 267 CPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVRE 346 (774)
Q Consensus 267 TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~ 346 (774)
+.+.|.++... .+.+.++|||||+--+... =|.+.++++......+. .-+.....+|++-||+.....+
T Consensus 128 qIdSL~R~~~~-----~l~~yDvVIIDEv~svL~q--L~S~Tm~~~~~v~~~L~----~lI~~ak~VI~~DA~ln~~tvd 196 (824)
T PF02399_consen 128 QIDSLHRLDGS-----LLDRYDVVIIDEVMSVLNQ--LFSPTMRQREEVDNLLK----ELIRNAKTVIVMDADLNDQTVD 196 (824)
T ss_pred Eehhhhhcccc-----cccccCEEEEehHHHHHHH--HhHHHHhhHHHHHHHHH----HHHHhCCeEEEecCCCCHHHHH
Confidence 88888765431 2355899999999877532 24444444433332221 1122256799999999988877
Q ss_pred HHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcc
Q 004098 347 DILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSM 426 (774)
Q Consensus 347 ~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (774)
-+.. +.-.+...++...+..++..-.....-.... .+.+...++ +.++..+..
T Consensus 197 Fl~~-~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~---~~~l~~~~~------------------~~~~~~~~~----- 249 (824)
T PF02399_consen 197 FLAS-CRPDENIHVIVNTYASPGFSNRRCTFLRSLG---TDTLAAALN------------------PEDENADTS----- 249 (824)
T ss_pred HHHH-hCCCCcEEEEEeeeecCCcccceEEEecccC---cHHHHHHhC------------------CcccccccC-----
Confidence 5544 4333344444444333322111100000000 000000000 000000000
Q ss_pred cccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhc
Q 004098 427 SEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSML 506 (774)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L 506 (774)
.................+...-...++..|
T Consensus 250 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L 279 (824)
T PF02399_consen 250 --------------------------------------------------PTPKHSPDPTATAAISNDETTFFSELLARL 279 (824)
T ss_pred --------------------------------------------------CCcCCCCccccccccccchhhHHHHHHHHH
Confidence 000000000000000111111122222222
Q ss_pred cCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcce--E
Q 004098 507 QEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRR--I 584 (774)
Q Consensus 507 ~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~--V 584 (774)
. .+..+-||+.|...++.+++.....+.++..+++.-+..+ + +.| ++.+|++=|.+..-|+++.+..+ |
T Consensus 280 ~---~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~W--~~~~VviYT~~itvG~Sf~~~HF~~~ 350 (824)
T PF02399_consen 280 N---AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ESW--KKYDVVIYTPVITVGLSFEEKHFDSM 350 (824)
T ss_pred h---CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-ccc--cceeEEEEeceEEEEeccchhhceEE
Confidence 2 3457889999999999999999998999999988765552 2 233 46899999999999999976543 3
Q ss_pred EEe--CCC--CCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 585 IHY--GWP--QSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 585 I~~--d~p--~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
.-| ... .++.+.+|++||. |.=...+.+++++...
T Consensus 351 f~yvk~~~~gpd~~s~~Q~lgRv-R~l~~~ei~v~~d~~~ 389 (824)
T PF02399_consen 351 FAYVKPMSYGPDMVSVYQMLGRV-RSLLDNEIYVYIDASG 389 (824)
T ss_pred EEEecCCCCCCcHHHHHHHHHHH-HhhccCeEEEEEeccc
Confidence 334 222 3566799999999 4445677788876543
No 161
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.15 E-value=6.1e-11 Score=126.67 Aligned_cols=157 Identities=17% Similarity=0.145 Sum_probs=98.8
Q ss_pred HHHHHHHHHHc-------------CCCEEEEecCCCchHHHHHHhhh--c-c--C---CeEEEEccchHHHHHHHHHHHh
Q 004098 177 FQKEALSAWLA-------------HHDCLVLAATGSGKSLCFQIPAL--L-T--G---KVVVVISPLISLMHDQCSKLSK 235 (774)
Q Consensus 177 ~Q~~ai~~il~-------------g~d~lv~apTGsGKTl~~~lpal--~-~--~---~~~LVvsPt~~L~~qq~~~l~~ 235 (774)
+|.+++.+++. .+.+|++..+|+|||+..+..+. . . . ..+|||+|. +++.+|..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 68899888753 35688888999999987665543 1 1 1 259999999 999999999999
Q ss_pred cC----CcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHH-----HHHHHHHHHHHhcCccEEEEecccccccCCCCcH
Q 004098 236 HG----VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI-----RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFR 306 (774)
Q Consensus 236 ~g----i~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~-----~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr 306 (774)
+. .++..+.+.. .............+++++|++.+. .... .+...++++|||||+|.+.+...
T Consensus 80 ~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~----~l~~~~~~~vIvDEaH~~k~~~s--- 151 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDS-ERRRLSKNQLPKYDVVITTYETLRKARKKKDKE----DLKQIKWDRVIVDEAHRLKNKDS--- 151 (299)
T ss_dssp HSGT-TS-EEEESSSC-HHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTH----HHHTSEEEEEEETTGGGGTTTTS---
T ss_pred cccccccccccccccc-ccccccccccccceeeecccccccccccccccc----ccccccceeEEEecccccccccc---
Confidence 74 3444444443 111111112345799999999987 2222 23335599999999999965442
Q ss_pred HHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCC
Q 004098 307 PDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMS 355 (774)
Q Consensus 307 ~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~ 355 (774)
..+..+.. +. ...+++|||||..+...++...+.+.
T Consensus 152 ~~~~~l~~----l~---------~~~~~lLSgTP~~n~~~dl~~~l~~L 187 (299)
T PF00176_consen 152 KRYKALRK----LR---------ARYRWLLSGTPIQNSLEDLYSLLRFL 187 (299)
T ss_dssp HHHHHHHC----CC---------ECEEEEE-SS-SSSGSHHHHHHHHHH
T ss_pred cccccccc----cc---------cceEEeeccccccccccccccchhee
Confidence 22222211 11 45689999999888888887776543
No 162
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.07 E-value=1.4e-08 Score=116.89 Aligned_cols=416 Identities=17% Similarity=0.162 Sum_probs=226.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHh---
Q 004098 162 NSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK--- 235 (774)
Q Consensus 162 ~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~--- 235 (774)
.++-++.+|+. +...| .+-.+.-+..-++-|.||-||||++.+|+.+ .+..+.||...--||.--..++.+
T Consensus 70 REa~~Rvlg~~-~~dVQ--liG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~ 146 (822)
T COG0653 70 REASKRVLGMR-HFDVQ--LLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYE 146 (822)
T ss_pred hHHHHHhcCCC-hhhHH--HhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHH
Confidence 34445566663 44455 4545544666799999999999999999864 467777888888887644444333
Q ss_pred -cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHH-HHHH----HHHHHHHhcCccEEEEecccccc----------
Q 004098 236 -HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI-RLIK----PLQRLAESRGIALFAIDEVHCVS---------- 299 (774)
Q Consensus 236 -~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~-~ll~----~~~~~~~~~~i~~iVIDEaH~l~---------- 299 (774)
+|..+.+...+.+....... . .++|.|+|-..|- +.+. ....-.....+.+.||||+|-++
T Consensus 147 ~LGlsvG~~~~~m~~~ek~~a-Y--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiI 223 (822)
T COG0653 147 FLGLSVGVILAGMSPEEKRAA-Y--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLII 223 (822)
T ss_pred HcCCceeeccCCCChHHHHHH-H--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceee
Confidence 58999988888866443222 2 3699999987663 1111 11112223568999999999763
Q ss_pred cCCCCc-HHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCC---ceE----------EEccC
Q 004098 300 KWGHDF-RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKG---TKF----------VLTSF 365 (774)
Q Consensus 300 ~~g~~f-r~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~---~~~----------~~~~~ 365 (774)
.|...+ -..|..+..+...+.....-.+-.....+.||- .-.+.+.+.|++..- ..+ -....
T Consensus 224 SG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte----~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l 299 (822)
T COG0653 224 SGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTE----SGLEKAEELLGIENLYDLENVNLVHHLNQALRAHIL 299 (822)
T ss_pred ecccccCchHHHHHHHHHHHhccccceeecchhcccccch----hhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHH
Confidence 232223 345777766665544321111122233444443 223333444433210 000 00011
Q ss_pred CCCCcEEEEeecC----------CccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCC
Q 004098 366 FRPNLRFSVKHSK----------TSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPN 435 (774)
Q Consensus 366 ~r~~l~~~v~~~~----------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (774)
+..+..|.|.... .-....|.+.+++.++.-..- ...++......
T Consensus 300 ~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv-------------------------~i~~e~~tlat 354 (822)
T COG0653 300 FFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGV-------------------------EIQEENQTLAT 354 (822)
T ss_pred hhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCC-------------------------cccccceeehh
Confidence 2223334443221 001123444444444321100 00000100000
Q ss_pred -CCCCCCC--CccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCC-C
Q 004098 436 -IGDGYYD--DEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-E 511 (774)
Q Consensus 436 -~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~-~ 511 (774)
.-+.+|. ....+++.+.+.-..+|..--..+ .-.+..+.|.. +....-........|....+..+.... .
T Consensus 355 ITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~-----vv~iPTnrp~~-R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~ 428 (822)
T COG0653 355 ITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLD-----VVVIPTNRPII-RLDEPDLVYKTEEEKFKAIVEDIKERHEK 428 (822)
T ss_pred hhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCc-----eeeccCCCccc-CCCCccccccchHHHHHHHHHHHHHHHhc
Confidence 1111111 123344444444444554322111 11122222222 111111112222345555665554443 5
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccC---Ccc------
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKL---NVR------ 582 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip---~V~------ 582 (774)
++|+||-+.+....+.+.+.|.+.|++-..+++.-...+-+.+-+.-+.| .|-|||+++|||-||. ++.
T Consensus 429 gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lG 506 (822)
T COG0653 429 GQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELG 506 (822)
T ss_pred CCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhC
Confidence 66999999999999999999999999988888876644434343333344 6789999999999984 221
Q ss_pred --eEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 583 --RIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 583 --~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
+||-..--.|-.---|-.||+||.|.+|.+..|++..|
T Consensus 507 GL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 507 GLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred CcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 46655555666666799999999999999988876543
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.02 E-value=2.2e-10 Score=104.49 Aligned_cols=132 Identities=17% Similarity=0.111 Sum_probs=78.6
Q ss_pred CCCEEEEecCCCchHHHHH----HhhhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceE
Q 004098 188 HHDCLVLAATGSGKSLCFQ----IPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSI 263 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~----lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~I 263 (774)
|+-.++-+.+|+|||--.+ .-++.++.++|||.|||.++....+.|+...++.. ...-.. ...++.-|
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~---t~~~~~-----~~~g~~~i 75 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFH---TNARMR-----THFGSSII 75 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEE---STTSS---------SSSSE
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccC---ceeeec-----cccCCCcc
Confidence 5557888999999997532 22445799999999999999999999986553322 221111 12355678
Q ss_pred EEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHH
Q 004098 264 IYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343 (774)
Q Consensus 264 lv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~ 343 (774)
-++|..++..++.. -....++++||+||||..--+ .+.-.+.+...-.. ....+|++||||+-.
T Consensus 76 ~vMc~at~~~~~~~---p~~~~~yd~II~DEcH~~Dp~------sIA~rg~l~~~~~~-------g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 76 DVMCHATYGHFLLN---PCRLKNYDVIIMDECHFTDPT------SIAARGYLRELAES-------GEAKVIFMTATPPGS 139 (148)
T ss_dssp EEEEHHHHHHHHHT---SSCTTS-SEEEECTTT--SHH------HHHHHHHHHHHHHT-------TS-EEEEEESS-TT-
T ss_pred cccccHHHHHHhcC---cccccCccEEEEeccccCCHH------HHhhheeHHHhhhc-------cCeeEEEEeCCCCCC
Confidence 89999988766542 334578999999999986422 22222222222110 146799999999754
No 164
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.86 E-value=2.3e-08 Score=105.67 Aligned_cols=68 Identities=19% Similarity=0.169 Sum_probs=54.8
Q ss_pred hcCCCCCCHHHHHHHHH----HHcCCCEEEEecCCCchHHHHHHhhhc----cCC-----eEEEEccchHHHHHHHHHHH
Q 004098 168 HFGHSSLKNFQKEALSA----WLAHHDCLVLAATGSGKSLCFQIPALL----TGK-----VVVVISPLISLMHDQCSKLS 234 (774)
Q Consensus 168 ~~g~~~~r~~Q~~ai~~----il~g~d~lv~apTGsGKTl~~~lpal~----~~~-----~~LVvsPt~~L~~qq~~~l~ 234 (774)
.|.|. +||.|.+.+.. +.+|.++++.||||+|||++|++|++. .+. +++|.++|.++..|....++
T Consensus 4 ~FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 4 YFPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred cCCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 36675 69999995554 446899999999999999999999973 233 79999999999888777776
Q ss_pred hc
Q 004098 235 KH 236 (774)
Q Consensus 235 ~~ 236 (774)
+.
T Consensus 83 ~~ 84 (289)
T smart00488 83 KL 84 (289)
T ss_pred hc
Confidence 53
No 165
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.86 E-value=2.3e-08 Score=105.67 Aligned_cols=68 Identities=19% Similarity=0.169 Sum_probs=54.8
Q ss_pred hcCCCCCCHHHHHHHHH----HHcCCCEEEEecCCCchHHHHHHhhhc----cCC-----eEEEEccchHHHHHHHHHHH
Q 004098 168 HFGHSSLKNFQKEALSA----WLAHHDCLVLAATGSGKSLCFQIPALL----TGK-----VVVVISPLISLMHDQCSKLS 234 (774)
Q Consensus 168 ~~g~~~~r~~Q~~ai~~----il~g~d~lv~apTGsGKTl~~~lpal~----~~~-----~~LVvsPt~~L~~qq~~~l~ 234 (774)
.|.|. +||.|.+.+.. +.+|.++++.||||+|||++|++|++. .+. +++|.++|.++..|....++
T Consensus 4 ~FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 4 YFPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred cCCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 36675 69999995554 446899999999999999999999973 233 79999999999888777776
Q ss_pred hc
Q 004098 235 KH 236 (774)
Q Consensus 235 ~~ 236 (774)
+.
T Consensus 83 ~~ 84 (289)
T smart00489 83 KL 84 (289)
T ss_pred hc
Confidence 53
No 166
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.79 E-value=1.8e-08 Score=118.66 Aligned_cols=80 Identities=8% Similarity=0.003 Sum_probs=58.9
Q ss_pred eEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCC
Q 004098 262 SIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341 (774)
Q Consensus 262 ~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~ 341 (774)
.|+++||..|...+- .+.+++..|..|||||||++.+- ..|.-|..+.+.-. +..-+.||||+|.
T Consensus 9 gi~~~T~rIl~~DlL--~~ri~~~~itgiiv~~Ahr~~~~-----~~eaFI~rlyr~~n--------~~gfIkafSdsP~ 73 (814)
T TIGR00596 9 GIFSITSRILVVDLL--TGIIPPELITGILVLRADRIIES-----SQEAFILRLYRQKN--------KTGFIKAFSDNPE 73 (814)
T ss_pred CEEEEechhhHhHHh--cCCCCHHHccEEEEeeccccccc-----ccHHHHHHHHHHhC--------CCcceEEecCCCc
Confidence 799999999986554 67788889999999999999742 23333433332221 1455999999997
Q ss_pred H-----HHHHHHHHHcCCCC
Q 004098 342 I-----QVREDILKSLHMSK 356 (774)
Q Consensus 342 ~-----~~~~~i~~~L~~~~ 356 (774)
. .-.+.+++.|++..
T Consensus 74 ~~~~g~~~l~~vmk~L~i~~ 93 (814)
T TIGR00596 74 AFTMGFSPLETKMRNLFLRH 93 (814)
T ss_pred ccccchHHHHHHHHHhCcCe
Confidence 6 45888999999863
No 167
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.77 E-value=1.6e-06 Score=94.78 Aligned_cols=110 Identities=15% Similarity=0.224 Sum_probs=92.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc--cccCcccCCcceEEEeC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA--FGMGIDKLNVRRIIHYG 588 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a--~~~GIDip~V~~VI~~d 588 (774)
..+.+|||+++--+=-.|-++|++.++..+.+|--.++.+-.++-..|..|+.+||+-|.= +=+-..+..|+.||.|+
T Consensus 299 ~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~ 378 (442)
T PF06862_consen 299 KMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYG 378 (442)
T ss_pred CCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEEC
Confidence 4568999999999999999999999999999999999999999999999999999999953 44556788899999999
Q ss_pred CCCCHHHHHHHhhccccCC------CcceEEEEeeCCC
Q 004098 589 WPQSLEAYYQEAGRAGRDG------HLADCVLYANLSS 620 (774)
Q Consensus 589 ~p~s~~~y~Qr~GRaGR~G------~~g~~il~~~~~~ 620 (774)
+|..+.-|-..+.-.+... ....|.++|+.-|
T Consensus 379 ~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D 416 (442)
T PF06862_consen 379 PPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYD 416 (442)
T ss_pred CCCChhHHHHHHhhhcccccccccccCceEEEEecHhH
Confidence 9999888776665444433 2567888887544
No 168
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.74 E-value=3e-07 Score=111.65 Aligned_cols=137 Identities=18% Similarity=0.209 Sum_probs=90.0
Q ss_pred CCEEEEecCCCchHHHHHHhh-----hccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceE
Q 004098 189 HDCLVLAATGSGKSLCFQIPA-----LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSI 263 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa-----l~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~I 263 (774)
+..+|+=-||||||++....| +...+.++||+-.+.|-.|..+.+..++..+.......+.......+..+.-.|
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~~~i 353 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGKGKI 353 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCCCcE
Confidence 468999999999998743322 235789999999999999999999998644333222222333333333344589
Q ss_pred EEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHH-HHHHhcccccccccCCCCEEEEeccCCH
Q 004098 264 IYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSV-LRENFGANNLKSLKFDIPLMALTATATI 342 (774)
Q Consensus 264 lv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~-l~~~~~~~~~~~l~~~~~il~lTAT~~~ 342 (774)
+|+|-+.+..............+--.||+||||+- +.| .+.. ++..|+ +...++||+||..
T Consensus 354 i~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS-Q~G--------~~~~~~~~~~~---------~a~~~gFTGTPi~ 415 (962)
T COG0610 354 IVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS-QYG--------ELAKLLKKALK---------KAIFIGFTGTPIF 415 (962)
T ss_pred EEEEecccchhhhcccccccCCCcEEEEEechhhc-ccc--------HHHHHHHHHhc---------cceEEEeeCCccc
Confidence 99999999776543211112233456888999974 333 2222 244554 6889999999954
Q ss_pred H
Q 004098 343 Q 343 (774)
Q Consensus 343 ~ 343 (774)
.
T Consensus 416 ~ 416 (962)
T COG0610 416 K 416 (962)
T ss_pred c
Confidence 3
No 169
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.73 E-value=9.7e-07 Score=98.32 Aligned_cols=118 Identities=17% Similarity=0.176 Sum_probs=96.3
Q ss_pred chhHhhhhccCCCC-CCcEEEEeCchHHHHHHHHHHHhCC------------------CceEEecCCCCHHHHHHHHHHH
Q 004098 498 KPAERLSMLQEPLE-DGLTIIYVPTRKETLSIAKYLCGFG------------------VKAAAYNASLPKSQLRRVHTEF 558 (774)
Q Consensus 498 k~~~ll~~L~~~~~-~~~~IIF~~sr~~~~~l~~~L~~~g------------------~~~~~~h~~l~~~~R~~~~~~F 558 (774)
|....++++.+... +.++|||.++.-..+.|.+.|.++. .....+.|..+..+|++.+++|
T Consensus 704 k~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqf 783 (1387)
T KOG1016|consen 704 KIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQF 783 (1387)
T ss_pred ceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhc
Confidence 33444445544433 3489999999999999999998742 2344667888999999999999
Q ss_pred hcC---CceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEE
Q 004098 559 HEN---KLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (774)
Q Consensus 559 ~~g---~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~ 615 (774)
.+. .--++++|.+...|||+-..+.+|.||.-|++---.|.+-|.-|.|+...|++|
T Consensus 784 N~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvY 843 (1387)
T KOG1016|consen 784 NSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVY 843 (1387)
T ss_pred cCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEE
Confidence 854 235889999999999998888999999999999999999999999999999987
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.69 E-value=1.8e-07 Score=96.25 Aligned_cols=133 Identities=22% Similarity=0.263 Sum_probs=93.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHh--
Q 004098 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK-- 235 (774)
Q Consensus 161 l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~-- 235 (774)
+.++.++.+|+ .|++.|.-++-.+..|+ |+.+.||-|||++..+|+.. .+..+-||+....|+..-++++..
T Consensus 66 ~rea~~r~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 66 VREAARRTLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp HHHHHHHHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHH
Confidence 44455567787 69999999998887776 99999999999999888864 578888889999998877776655
Q ss_pred --cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHH-HHHH-HH---HHHHhcCccEEEEecccccc
Q 004098 236 --HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIR-LIKP-LQ---RLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 236 --~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~-ll~~-~~---~~~~~~~i~~iVIDEaH~l~ 299 (774)
+|+.+..+..+.+..... .... ++|+|+|...+.- ++.. +. .......+.++||||||.++
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~-~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERR-EAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHTT--EEEEETTTEHHHHH-HHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHhhhccccCccccCHHHHH-HHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 599999998887654322 2222 4899999998863 3332 11 01113578999999999885
No 171
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.51 E-value=1.1e-07 Score=109.74 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=93.6
Q ss_pred CcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCc--eEEEEecccccCcccCCcceEEEeCCC
Q 004098 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKL--EVVVATIAFGMGIDKLNVRRIIHYGWP 590 (774)
Q Consensus 513 ~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~--~vLVAT~a~~~GIDip~V~~VI~~d~p 590 (774)
.++|||++-...++-+...|...++....|.|.|+...|.+.+..|..+.. ..+++..+.+-|+|+....+|+..|+=
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 389999999999999999999999999999999999999999999995532 356789999999999999999999999
Q ss_pred CCHHHHHHHhhccccCCCcceEEE
Q 004098 591 QSLEAYYQEAGRAGRDGHLADCVL 614 (774)
Q Consensus 591 ~s~~~y~Qr~GRaGR~G~~g~~il 614 (774)
||+..--|.+-||+|.|+.-.+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999999887765
No 172
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.49 E-value=2.9e-08 Score=114.36 Aligned_cols=169 Identities=21% Similarity=0.299 Sum_probs=109.2
Q ss_pred CCHHHHHHHHHHHc-CCCEEEEecCCCchHHHHHHhhhc-----cCCeEEEEccchHHHHHHHHHHHh----cCCcEEEE
Q 004098 174 LKNFQKEALSAWLA-HHDCLVLAATGSGKSLCFQIPALL-----TGKVVVVISPLISLMHDQCSKLSK----HGVTACFL 243 (774)
Q Consensus 174 ~r~~Q~~ai~~il~-g~d~lv~apTGsGKTl~~~lpal~-----~~~~~LVvsPt~~L~~qq~~~l~~----~gi~~~~l 243 (774)
+.|.|.+.+..+.. ..+.++.+|||+|||++|.+.+.. .+.++++|+|.++|+..-++.+.+ -|++++.+
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~ 1007 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIEL 1007 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEec
Confidence 44556555544332 467899999999999999887653 478999999999997655555444 48889998
Q ss_pred cCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc-CCCCcHHHHHHHHHHHHHhccc
Q 004098 244 GSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK-WGHDFRPDYRRLSVLRENFGAN 322 (774)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~-~g~~fr~~~~~l~~l~~~~~~~ 322 (774)
.+.....- .. ....+++|+||++.......+...--..++.++|+||.||+.+ .| |.+. +...+.++.
T Consensus 1008 tgd~~pd~--~~--v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rg----PVle-~ivsr~n~~-- 1076 (1230)
T KOG0952|consen 1008 TGDVTPDV--KA--VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRG----PVLE-VIVSRMNYI-- 1076 (1230)
T ss_pred cCccCCCh--hh--eecCceEEcccccccCccccccchhhhccccceeecccccccCCCc----ceEE-EEeeccccC--
Confidence 88766531 11 1246999999999876655444444457899999999999965 23 2221 212222221
Q ss_pred ccccccCCCCEEEEeccCCHHHHHHHHHHcCCCC
Q 004098 323 NLKSLKFDIPLMALTATATIQVREDILKSLHMSK 356 (774)
Q Consensus 323 ~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~ 356 (774)
-...++.++.++++ |+. ....++.++|+..+
T Consensus 1077 -s~~t~~~vr~~gls-ta~-~na~dla~wl~~~~ 1107 (1230)
T KOG0952|consen 1077 -SSQTEEPVRYLGLS-TAL-ANANDLADWLNIKD 1107 (1230)
T ss_pred -ccccCcchhhhhHh-hhh-hccHHHHHHhCCCC
Confidence 11223345555544 222 34567889998874
No 173
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.40 E-value=2.5e-08 Score=113.52 Aligned_cols=358 Identities=15% Similarity=0.095 Sum_probs=192.3
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEecCCCchHHHHH--Hhhh----ccCCeEEEEccchHHHHHHHHHHHhc--CCcE
Q 004098 173 SLKNFQKEALSAWL----AHHDCLVLAATGSGKSLCFQ--IPAL----LTGKVVVVISPLISLMHDQCSKLSKH--GVTA 240 (774)
Q Consensus 173 ~~r~~Q~~ai~~il----~g~d~lv~apTGsGKTl~~~--lpal----~~~~~~LVvsPt~~L~~qq~~~l~~~--gi~~ 240 (774)
.+-+||.+.++++. .+.+++...++|.|||.... ++.+ ...+..|+++|.-..+. +-..+..+ ...+
T Consensus 295 ~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~n-we~e~~~wap~~~v 373 (696)
T KOG0383|consen 295 TLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVN-WEREFELWAPSFYV 373 (696)
T ss_pred cccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccC-CCCchhccCCCccc
Confidence 46789999998866 47899999999999996421 2223 23456788888644322 22222222 1112
Q ss_pred EEEcCCCChHHH---------------------HHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 241 CFLGSGQPDNKV---------------------EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 241 ~~l~~~~~~~~~---------------------~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
+...+....... ......-.++++..+|++...- ...+..-.+.++|+||+|++.
T Consensus 374 v~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~----~~il~~v~w~~livde~~rlk 449 (696)
T KOG0383|consen 374 VPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEID----QSILFSVQWGLLIVDEAHRLK 449 (696)
T ss_pred ccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccC----HHHHhhhhcceeEeechhhcc
Confidence 111111110000 0001122357788888866432 333444568999999999997
Q ss_pred cCCCCcHHHH-HHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecC
Q 004098 300 KWGHDFRPDY-RRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSK 378 (774)
Q Consensus 300 ~~g~~fr~~~-~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~ 378 (774)
.. +... +.+. .++ .-.-++||.|+..+..+++...|++.... .+. ...
T Consensus 450 n~----~s~~f~~l~----~~~---------~~~~~lltgtPlqnn~~el~~ll~flt~~-~~~----~~~--------- 498 (696)
T KOG0383|consen 450 NK----QSKRFRVLT----AYP---------IDSKLLLTGTPLQNNLEELFNLLNFLTPG-RFN----SLE--------- 498 (696)
T ss_pred cc----hhhhhhhcc----ccc---------cchhhhccCCcchhhhHHhhhcccccCcc-ccc----chh---------
Confidence 52 2211 1111 111 23468999999999999999998776322 111 110
Q ss_pred CccchhhhHhHHHHHHHHHhhhcc---cccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccch
Q 004098 379 TSSRASYKKDFCQLIDIYTKKKKT---GEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEM 455 (774)
Q Consensus 379 ~~~~~~~~~~l~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (774)
.+.++++.+...-..+... .+...+.+. .++-+....-....-.+..+..++.+|......+.......
T Consensus 499 -----~f~e~~~d~~~~~~~~~l~~l~~p~~lrr~k---~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~~ 570 (696)
T KOG0383|consen 499 -----WFLEEFHDISCEEQIKKLHLLLCPHMLRRLK---LDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLAG 570 (696)
T ss_pred -----hhhhhcchhhHHHHHHhhccccCchhhhhhh---hhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhhc
Confidence 1111111111111000000 000000000 00000000000111122333333334432222221111112
Q ss_pred hhhhhhcCCCcccccccccccCCCCCCCCCCcc---chhhccccCchhHhhhhccCCCC-CCcEEEEeCchHHHHHHHHH
Q 004098 456 SVEFLENDSVDDWDVACGEFYGHSPHRDRDTDR---SFERTDLLNKPAERLSMLQEPLE-DGLTIIYVPTRKETLSIAKY 531 (774)
Q Consensus 456 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~k~~~ll~~L~~~~~-~~~~IIF~~sr~~~~~l~~~ 531 (774)
...|.....+++....|.+.+.....++..... .........|...++..+++... +.+++||.+.....+.+.++
T Consensus 571 ~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~ 650 (696)
T KOG0383|consen 571 VHQYSLLNIVMELRKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDY 650 (696)
T ss_pred chhHHHHHHHHHHHHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHH
Confidence 233444445566777888888766532221111 11222334455555555555443 44999999999999999999
Q ss_pred HHhCCCceEEecCCCCHHHHHHHHHHHh---cCCceEEEEecccccC
Q 004098 532 LCGFGVKAAAYNASLPKSQLRRVHTEFH---ENKLEVVVATIAFGMG 575 (774)
Q Consensus 532 L~~~g~~~~~~h~~l~~~~R~~~~~~F~---~g~~~vLVAT~a~~~G 575 (774)
+...+ ....+.|.....+|+.++..|. ...+-+|.+|.+.|.|
T Consensus 651 ~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 651 LTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99888 8999999999999999999998 4578899999999887
No 174
>PF09382 RQC: RQC domain; InterPro: IPR018982 This entry represents the RQC domain, which is a DNA-binding domain found only in RecQ family enzymes. RecQ family helicases can unwind G4 DNA, and play important roles at G-rich domains of the genome, including the telomeres, rDNA, and immunoglobulin switch regions. This domain has a helix-turn-helix structure and acts as a high affinity G4 DNA binding domain []. Binding of RecQ to Holliday junctions involves both the RQC and the HRDC domains.; GO: 0043140 ATP-dependent 3'-5' DNA helicase activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1OYW_A 1OYY_A 3AAF_A 2AXL_A 2V1X_B 2WWY_B.
Probab=98.39 E-value=2.2e-07 Score=82.77 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHHHHHhccCCccc-ceeeeccCcccccccCCCCccchhhhhhhhhhccccCCHHHHHHHHHHHHHcCCc
Q 004098 687 NLKEEANILMQVIAAYNEQSNSMD-DDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYI 765 (774)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (774)
|+|++|+++++||.+++++.+... +|+++|+.++.....++.+++.| |.+++.+..||+.++++|+.+|||
T Consensus 1 D~T~~a~~il~~V~~~~~~~~~~~ivdvlrGs~~~~i~~~~~~~l~~y--------G~gk~~~~~~~~~li~~Li~~g~L 72 (106)
T PF09382_consen 1 DVTEEAKKILSCVQRLKQRFGLSQIVDVLRGSKSKKIREKGHDQLPTY--------GIGKDMSKDDWERLIRQLILEGYL 72 (106)
T ss_dssp E-HHHHHHHHHHHHHTTT-S-HHHHHHHHTT-S-CCCHHTTGGGSTTT--------TTTTTS-HHHHHHHHHHHHHTTSE
T ss_pred ChHHHHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhcCCCcCccc--------CCcccCCHHHHHHHHHHHHHcCCc
Confidence 789999999999999877555433 89999987776555555677777 334578999999999999999999
Q ss_pred eecCC
Q 004098 766 REGDD 770 (774)
Q Consensus 766 ~~~~~ 770 (774)
.+..+
T Consensus 73 ~~~~~ 77 (106)
T PF09382_consen 73 SEDNG 77 (106)
T ss_dssp EEEEC
T ss_pred eecCC
Confidence 87765
No 175
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.28 E-value=1.1e-05 Score=95.60 Aligned_cols=45 Identities=24% Similarity=0.183 Sum_probs=41.9
Q ss_pred CceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccC
Q 004098 562 KLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRD 606 (774)
Q Consensus 562 ~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~ 606 (774)
.+++|++-.++.+|.|-|+|-.+.-..-..|...-.|.+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 789999999999999999999998898888999999999999883
No 176
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=1.8e-05 Score=85.49 Aligned_cols=108 Identities=16% Similarity=0.231 Sum_probs=87.5
Q ss_pred cEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc--cccCcccCCcceEEEeCCCC
Q 004098 514 LTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA--FGMGIDKLNVRRIIHYGWPQ 591 (774)
Q Consensus 514 ~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a--~~~GIDip~V~~VI~~d~p~ 591 (774)
-+|||.++--.--.+-.++++.++....+|--.++..-.++-+.|-.|...||+-|.- +=+--++..|+.||.|.+|.
T Consensus 554 ~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~ 633 (698)
T KOG2340|consen 554 GILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPN 633 (698)
T ss_pred ceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCC
Confidence 5899999999999999999999888777776666666677778899999999999964 55778999999999999999
Q ss_pred CHHHH---HHHhhccccCC----CcceEEEEeeCCCC
Q 004098 592 SLEAY---YQEAGRAGRDG----HLADCVLYANLSSM 621 (774)
Q Consensus 592 s~~~y---~Qr~GRaGR~G----~~g~~il~~~~~~~ 621 (774)
++.-| +-+++|+.-.| ....|.++|+.-|.
T Consensus 634 ~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 634 NPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred CcHHHHHHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 87755 67777776433 44678888876554
No 177
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.26 E-value=4.8e-06 Score=94.65 Aligned_cols=106 Identities=20% Similarity=0.264 Sum_probs=86.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC-------CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcce
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGF-------GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRR 583 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~ 583 (774)
-.+-++||.+--...-.|..+|... .+.....|+.+...++.++.+.-..|..++++.|.+...-|-+.++.+
T Consensus 642 i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~ 721 (1282)
T KOG0921|consen 642 IDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVY 721 (1282)
T ss_pred CccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeE
Confidence 3456888888888888888887652 457788999999899999999889999999999999999999999888
Q ss_pred EEEeCCC------------------CCHHHHHHHhhccccCCCcceEEEEee
Q 004098 584 IIHYGWP------------------QSLEAYYQEAGRAGRDGHLADCVLYAN 617 (774)
Q Consensus 584 VI~~d~p------------------~s~~~y~Qr~GRaGR~G~~g~~il~~~ 617 (774)
||..+.- .|.-+..||.||+||. ++|.|..++.
T Consensus 722 vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 722 VIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred EEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccH
Confidence 8865542 2455779999999998 6788877654
No 178
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.79 E-value=8.2e-05 Score=72.06 Aligned_cols=105 Identities=17% Similarity=0.222 Sum_probs=72.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC--ceEEecCCCCHHHHHHHHHHHhcCCceEEEEec--ccccCcccCC--cceE
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGV--KAAAYNASLPKSQLRRVHTEFHENKLEVVVATI--AFGMGIDKLN--VRRI 584 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~--~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~--a~~~GIDip~--V~~V 584 (774)
.++.+|||++|.+..+.+.+.+..... ....+.- ...++..+++.|+.++-.||+|+. .+.+|||+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 357899999999999999999987532 1122332 356789999999999999999999 9999999996 7899
Q ss_pred EEeCCCC----CH--------------------------HHHHHHhhccccCCCcceEEEEee
Q 004098 585 IHYGWPQ----SL--------------------------EAYYQEAGRAGRDGHLADCVLYAN 617 (774)
Q Consensus 585 I~~d~p~----s~--------------------------~~y~Qr~GRaGR~G~~g~~il~~~ 617 (774)
|..++|. ++ ....|.+||+-|....--++++++
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD 148 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLD 148 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEES
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEc
Confidence 9999883 11 122588999999876544555554
No 179
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.77 E-value=0.00023 Score=73.76 Aligned_cols=157 Identities=19% Similarity=0.115 Sum_probs=95.5
Q ss_pred CCCHHHHHHHHHHHc----------CCCEEEEecCCCchHHHHHHhhh---ccC-CeEEEEccchHHHHHHHHHHHhcCC
Q 004098 173 SLKNFQKEALSAWLA----------HHDCLVLAATGSGKSLCFQIPAL---LTG-KVVVVISPLISLMHDQCSKLSKHGV 238 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~----------g~d~lv~apTGsGKTl~~~lpal---~~~-~~~LVvsPt~~L~~qq~~~l~~~gi 238 (774)
.+...|.|++-.+-+ +.-.++-..||.||--...-.++ +++ .++|.|+.+-.|..|..+-|+..|-
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~ 116 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGA 116 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCC
Confidence 478889998866542 23456667999999864332222 344 4699999999999999999998764
Q ss_pred cE---EEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHH-------HHHHHH---HHhcCccEEEEecccccccCCC--
Q 004098 239 TA---CFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLI-------KPLQRL---AESRGIALFAIDEVHCVSKWGH-- 303 (774)
Q Consensus 239 ~~---~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll-------~~~~~~---~~~~~i~~iVIDEaH~l~~~g~-- 303 (774)
.. ..++.- ... ....-...|+++|+-.|...- ..+..+ +....=.+||+||||.+.....
T Consensus 117 ~~i~v~~l~~~-~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~ 191 (303)
T PF13872_consen 117 DNIPVHPLNKF-KYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGS 191 (303)
T ss_pred Ccccceechhh-ccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccC
Confidence 32 222211 000 001113369999999887542 112222 2122236899999999975321
Q ss_pred -CcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHH
Q 004098 304 -DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343 (774)
Q Consensus 304 -~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~ 343 (774)
.-...-..+..+.+.+| +.+++.+|||...+
T Consensus 192 ~~~sk~g~avl~LQ~~LP---------~ARvvY~SATgase 223 (303)
T PF13872_consen 192 KKPSKTGIAVLELQNRLP---------NARVVYASATGASE 223 (303)
T ss_pred ccccHHHHHHHHHHHhCC---------CCcEEEecccccCC
Confidence 01122233344555555 78899999997544
No 180
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.66 E-value=0.00038 Score=81.60 Aligned_cols=75 Identities=25% Similarity=0.268 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHcC-CCEEEEecCCCchHHHHH--Hh-hhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCC
Q 004098 172 SSLKNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQ--IP-ALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSG 246 (774)
Q Consensus 172 ~~~r~~Q~~ai~~il~g-~d~lv~apTGsGKTl~~~--lp-al~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~ 246 (774)
..+.+.|.+|+..++.. ..++|.+|+|+|||.+.. +- ++..+.++||++||..-+.+..+.+.+.+++++-+++.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg~~ 234 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRLGHP 234 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeCCc
Confidence 35789999999999976 568899999999995432 22 23467899999999999999999999877777776654
No 181
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.58 E-value=0.00028 Score=78.47 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=66.3
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhh----ccCCeEEEEccchHHHHHHHHHHHhcCCcEEEE
Q 004098 168 HFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL----LTGKVVVVISPLISLMHDQCSKLSKHGVTACFL 243 (774)
Q Consensus 168 ~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal----~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l 243 (774)
.+|+.++..-|..|+.++|+..=.|+.+|+|+|||.+-.-... ...+.+||++|..--+.|..+.+.+.|++++-+
T Consensus 405 ~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLKVvRl 484 (935)
T KOG1802|consen 405 VPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLKVVRL 484 (935)
T ss_pred CCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCceEeee
Confidence 4578889999999999999888899999999999975322211 257899999999999999999999999988877
Q ss_pred cCC
Q 004098 244 GSG 246 (774)
Q Consensus 244 ~~~ 246 (774)
.+.
T Consensus 485 ~ak 487 (935)
T KOG1802|consen 485 CAK 487 (935)
T ss_pred ehh
Confidence 653
No 182
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.58 E-value=0.0015 Score=65.29 Aligned_cols=125 Identities=19% Similarity=0.290 Sum_probs=78.9
Q ss_pred CCCHHHHHHHHHHHc---CCCEEEEecCCCchHHHHHHhhh----cc-CCeEEEEccchHHHHHHHHHHHhc-----CCc
Q 004098 173 SLKNFQKEALSAWLA---HHDCLVLAATGSGKSLCFQIPAL----LT-GKVVVVISPLISLMHDQCSKLSKH-----GVT 239 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~---g~d~lv~apTGsGKTl~~~lpal----~~-~~~~LVvsPt~~L~~qq~~~l~~~-----gi~ 239 (774)
-+|+.|.++...+++ |+|.+..+-+|.|||-+- +|++ .. ...+.+++| ++|..|..+.|... +-+
T Consensus 23 liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~ 100 (229)
T PF12340_consen 23 LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADGSRLVRVIVP-KALLEQMRQMLRSRLGGLLNRR 100 (229)
T ss_pred eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCe
Confidence 589999999999986 689999999999999873 4443 22 356777888 68999999888763 223
Q ss_pred EEEEc--CCCCh--HH---H---HHHHHcCCceEEEEChHHHHHHHHH-HHH-----------HHH----hcCccEEEEe
Q 004098 240 ACFLG--SGQPD--NK---V---EQKALRGMYSIIYVCPETVIRLIKP-LQR-----------LAE----SRGIALFAID 293 (774)
Q Consensus 240 ~~~l~--~~~~~--~~---~---~~~~~~~~~~Ilv~TPe~l~~ll~~-~~~-----------~~~----~~~i~~iVID 293 (774)
+..+. -.... .. . ...... .-.|+++|||.+..+.-. +.. ... +..-..=|+|
T Consensus 101 i~~lpFsR~~~~~~~~~~~~~~l~~~~~~-~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilD 179 (229)
T PF12340_consen 101 IYHLPFSRSTPLTPETLEKIRQLLEECMR-SGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILD 179 (229)
T ss_pred eEEecccCCCCCCHHHHHHHHHHHHHHHH-cCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeE
Confidence 33321 11111 11 1 111222 236999999988753211 110 111 2345667999
Q ss_pred ccccccc
Q 004098 294 EVHCVSK 300 (774)
Q Consensus 294 EaH~l~~ 300 (774)
|+|.++.
T Consensus 180 EsDe~L~ 186 (229)
T PF12340_consen 180 ESDEILS 186 (229)
T ss_pred CchhccC
Confidence 9998853
No 183
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.31 E-value=0.00063 Score=75.56 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEecCCCchHHHHHHh---hhccCCeEEEEccchHHHHHHHHHHH
Q 004098 173 SLKNFQKEALSAWLAHHD-CLVLAATGSGKSLCFQIP---ALLTGKVVVVISPLISLMHDQCSKLS 234 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d-~lv~apTGsGKTl~~~lp---al~~~~~~LVvsPt~~L~~qq~~~l~ 234 (774)
.+.+-|++|+..+++.++ .++.+|+|+|||.+-... ++.++.++||.+||..-+..+++++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 678899999999998866 577899999999764333 34578999999999999999999755
No 184
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.24 E-value=0.0011 Score=77.20 Aligned_cols=122 Identities=27% Similarity=0.251 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEecCCCchHHH--HHHhhh-ccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCC
Q 004098 173 SLKNFQKEALSAWLAHHD-CLVLAATGSGKSLC--FQIPAL-LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQP 248 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d-~lv~apTGsGKTl~--~~lpal-~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~ 248 (774)
.+..-|++|+..++..+| .++.+-+|+|||.+ .++-+| ..++++|..+-|.+-+.++.-+|+.+++...-++++..
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~k 748 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEK 748 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCccc
Confidence 577889999999998776 67888999999964 344444 46889999999999999999999999998777766644
Q ss_pred hHHHHHH----------------HHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc
Q 004098 249 DNKVEQK----------------ALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (774)
Q Consensus 249 ~~~~~~~----------------~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~ 300 (774)
.....+. ..-+.+.|+.+|==-+. .-++..+.+++.|||||-.++.
T Consensus 749 ih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~------~plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 749 IHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN------HPLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred cchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC------chhhhccccCEEEEcccccccc
Confidence 3211111 12234567777632221 2334456799999999998864
No 185
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.23 E-value=0.00068 Score=69.19 Aligned_cols=62 Identities=29% Similarity=0.431 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHcCCC-EEEEecCCCchHH--HHHHhhh---------ccCCeEEEEccchHHHHHHHHHHHh
Q 004098 174 LKNFQKEALSAWLAHHD-CLVLAATGSGKSL--CFQIPAL---------LTGKVVVVISPLISLMHDQCSKLSK 235 (774)
Q Consensus 174 ~r~~Q~~ai~~il~g~d-~lv~apTGsGKTl--~~~lpal---------~~~~~~LVvsPt~~L~~qq~~~l~~ 235 (774)
+.+.|.+||..++.... ++|.+|.|+|||. +.++-.+ ..+.++||++|+..-+.+.+..+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67889999999998888 9999999999994 3333333 4578999999999999999999988
No 186
>PF13245 AAA_19: Part of AAA domain
Probab=97.22 E-value=0.0008 Score=55.62 Aligned_cols=53 Identities=30% Similarity=0.395 Sum_probs=37.5
Q ss_pred HHHHHHcCCC-EEEEecCCCchHHHHH-Hhh-hc-c----CCeEEEEccchHHHHHHHHHH
Q 004098 181 ALSAWLAHHD-CLVLAATGSGKSLCFQ-IPA-LL-T----GKVVVVISPLISLMHDQCSKL 233 (774)
Q Consensus 181 ai~~il~g~d-~lv~apTGsGKTl~~~-lpa-l~-~----~~~~LVvsPt~~L~~qq~~~l 233 (774)
||...+.+.. ++|.+|.|+|||.+.. +.+ +. . +..++|++|++..+.+..+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 5554454445 4559999999994322 222 22 2 779999999999999988888
No 187
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.18 E-value=0.00054 Score=68.23 Aligned_cols=60 Identities=27% Similarity=0.360 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHcCC--CEEEEecCCCchHHHHHH--hhh-ccCCeEEEEccchHHHHHHHHH
Q 004098 173 SLKNFQKEALSAWLAHH--DCLVLAATGSGKSLCFQI--PAL-LTGKVVVVISPLISLMHDQCSK 232 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~--d~lv~apTGsGKTl~~~l--pal-~~~~~~LVvsPt~~L~~qq~~~ 232 (774)
+|++-|.+++..++... =+++.+|.|+|||.+... -++ ..+..+++++||...+.+..+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHh
Confidence 37889999999998654 367789999999975322 122 2468999999997776664443
No 188
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.15 E-value=0.0019 Score=64.06 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---c--CCeEEEEccchHH
Q 004098 172 SSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---T--GKVVVVISPLISL 225 (774)
Q Consensus 172 ~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~--~~~~LVvsPt~~L 225 (774)
...+..|..++.++++..-+++.+|.|+|||+.++..++. . -.+++|+-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 3567899999999998888899999999999987766653 2 3478888887653
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.98 E-value=0.00094 Score=73.03 Aligned_cols=90 Identities=19% Similarity=0.185 Sum_probs=57.5
Q ss_pred EEEEecCCCchHHHHHHhh--h---ccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEEE
Q 004098 191 CLVLAATGSGKSLCFQIPA--L---LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIY 265 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpa--l---~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv 265 (774)
++|.+..|||||++.+-.+ + ..+..++++++..+|+......+.... . .......+
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~------~-------------~~~~~~~~ 64 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKY------N-------------PKLKKSDF 64 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhc------c-------------cchhhhhh
Confidence 6889999999998754322 2 357889999999999888777776532 0 00112334
Q ss_pred EChHHHHHHHHHHHHHHHhcCccEEEEecccccccC
Q 004098 266 VCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKW 301 (774)
Q Consensus 266 ~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~ 301 (774)
..|..+..... .........++|||||||++.+.
T Consensus 65 ~~~~~~i~~~~--~~~~~~~~~DviivDEAqrl~~~ 98 (352)
T PF09848_consen 65 RKPTSFINNYS--ESDKEKNKYDVIIVDEAQRLRTK 98 (352)
T ss_pred hhhHHHHhhcc--cccccCCcCCEEEEehhHhhhhc
Confidence 44443332111 11123467899999999999873
No 190
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.88 E-value=0.0054 Score=70.79 Aligned_cols=54 Identities=26% Similarity=0.214 Sum_probs=46.3
Q ss_pred cCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccC--CCcceEE
Q 004098 560 ENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRD--GHLADCV 613 (774)
Q Consensus 560 ~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~--G~~g~~i 613 (774)
+...++|.+-.++-+|.|-|||=.++-.....|..+=.|++||.-|- .+.|.-+
T Consensus 481 d~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV 536 (985)
T COG3587 481 DEPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERV 536 (985)
T ss_pred CCcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeecccccee
Confidence 44689999999999999999999999999999999999999999993 3444433
No 191
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.86 E-value=0.0035 Score=57.66 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=12.5
Q ss_pred CCCEEEEecCCCchHHHH
Q 004098 188 HHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~ 205 (774)
++-+++.+|+|+|||.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 456899999999999764
No 192
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.79 E-value=0.0086 Score=71.44 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=45.9
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHH--HHhhhcc-C--CeEEEEccchHHHHH
Q 004098 168 HFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCF--QIPALLT-G--KVVVVISPLISLMHD 228 (774)
Q Consensus 168 ~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~--~lpal~~-~--~~~LVvsPt~~L~~q 228 (774)
.+++ .+++.|++|+..++.++-+++.++.|+|||.+. ++-++.. + ..+++++||-.-+..
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~ 383 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKR 383 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHH
Confidence 4565 699999999999998889999999999999743 2333332 3 578889999766653
No 193
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.037 Score=60.74 Aligned_cols=126 Identities=15% Similarity=0.183 Sum_probs=70.0
Q ss_pred CCEEEEecCCCchHHHHH-Hhhhc------cCCeEEEE-c-cchHHHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHc
Q 004098 189 HDCLVLAATGSGKSLCFQ-IPALL------TGKVVVVI-S-PLISLMHDQCSKLSK-HGVTACFLGSGQPDNKVEQKALR 258 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~-lpal~------~~~~~LVv-s-Pt~~L~~qq~~~l~~-~gi~~~~l~~~~~~~~~~~~~~~ 258 (774)
+.+++++|||+|||.+.. +.+.+ .+..+.++ + +.|.-+.+|...+.+ .|+++...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~--------------- 239 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAI--------------- 239 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEee---------------
Confidence 467889999999997643 22221 12333333 2 234444445544443 45543211
Q ss_pred CCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEec
Q 004098 259 GMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338 (774)
Q Consensus 259 ~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTA 338 (774)
-+++.+...+. ...+.++|+||++.+... + ...+.++..+..... ++.-.+|.|+|
T Consensus 240 -------~~~~~l~~~L~------~~~~~DlVLIDTaGr~~~---~-~~~l~el~~~l~~~~-------~~~e~~LVlsa 295 (388)
T PRK12723 240 -------ESFKDLKEEIT------QSKDFDLVLVDTIGKSPK---D-FMKLAEMKELLNACG-------RDAEFHLAVSS 295 (388)
T ss_pred -------CcHHHHHHHHH------HhCCCCEEEEcCCCCCcc---C-HHHHHHHHHHHHhcC-------CCCeEEEEEcC
Confidence 13333332222 246789999999998742 1 112344444333221 11245799999
Q ss_pred cCCHHHHHHHHHHcC
Q 004098 339 TATIQVREDILKSLH 353 (774)
Q Consensus 339 T~~~~~~~~i~~~L~ 353 (774)
|.......+++....
T Consensus 296 t~~~~~~~~~~~~~~ 310 (388)
T PRK12723 296 TTKTSDVKEIFHQFS 310 (388)
T ss_pred CCCHHHHHHHHHHhc
Confidence 999888888877764
No 194
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.69 E-value=0.017 Score=67.29 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCC-CCCHHHHHHHHHHHcCCCEEEEecCCCchHHH--HHHhhhcc-----CCeEEEEccchHHHHHHH
Q 004098 159 VKVNSLLKKHFGHS-SLKNFQKEALSAWLAHHDCLVLAATGSGKSLC--FQIPALLT-----GKVVVVISPLISLMHDQC 230 (774)
Q Consensus 159 ~~l~~~L~~~~g~~-~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~--~~lpal~~-----~~~~LVvsPt~~L~~qq~ 230 (774)
..+.+.|...|+.. ...+.|++|+...+.++-++|.+++|+|||.+ .++-.+.. ...+++++||.--+....
T Consensus 137 ~~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~ 216 (615)
T PRK10875 137 ALLRQTLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLT 216 (615)
T ss_pred HHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHH
Confidence 45666677677654 23589999999999988999999999999975 23333321 247888999977766666
Q ss_pred HHHH
Q 004098 231 SKLS 234 (774)
Q Consensus 231 ~~l~ 234 (774)
+.+.
T Consensus 217 e~~~ 220 (615)
T PRK10875 217 ESLG 220 (615)
T ss_pred HHHH
Confidence 5554
No 195
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.63 E-value=0.0076 Score=69.87 Aligned_cols=103 Identities=20% Similarity=0.223 Sum_probs=64.6
Q ss_pred cEEEEeCchHHHHHHHHHHHhC-------CCceEEecCCCCHHHHHHHHHHHh--------cCCceEEEEecccccCccc
Q 004098 514 LTIIYVPTRKETLSIAKYLCGF-------GVKAAAYNASLPKSQLRRVHTEFH--------ENKLEVVVATIAFGMGIDK 578 (774)
Q Consensus 514 ~~IIF~~sr~~~~~l~~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~F~--------~g~~~vLVAT~a~~~GIDi 578 (774)
..|||.++-...+.+..+.+.. +.+-..+-- -+..+-.+++.+|- .|-+-+.||-...++|||.
T Consensus 563 G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEP-r~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlDF 641 (945)
T KOG1132|consen 563 GLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEP-RSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLDF 641 (945)
T ss_pred ceEEeccchHHHHHHHHHHHcchHHHHhhcccCceecc-CCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCCc
Confidence 4999999988888875554432 111111111 12222333344443 3444577888899999999
Q ss_pred CC--cceEEEeCCCC-----------------------------------C---HHHHHHHhhccccCCCcceEEEEee
Q 004098 579 LN--VRRIIHYGWPQ-----------------------------------S---LEAYYQEAGRAGRDGHLADCVLYAN 617 (774)
Q Consensus 579 p~--V~~VI~~d~p~-----------------------------------s---~~~y~Qr~GRaGR~G~~g~~il~~~ 617 (774)
.+ -|.||..++|. + ....-|.+||+-|..+.=-++++++
T Consensus 642 sD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~D 720 (945)
T KOG1132|consen 642 SDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILCD 720 (945)
T ss_pred cccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEee
Confidence 75 57899999873 1 1233589999999876655666765
No 196
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.62 E-value=0.016 Score=63.21 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=45.8
Q ss_pred hcCCCCCCHHHHHHHHHHH----cCCCEEEEecCCCchHHHHHHhhh-------ccCCeEEEEccchHHHHHHHHHHHh
Q 004098 168 HFGHSSLKNFQKEALSAWL----AHHDCLVLAATGSGKSLCFQIPAL-------LTGKVVVVISPLISLMHDQCSKLSK 235 (774)
Q Consensus 168 ~~g~~~~r~~Q~~ai~~il----~g~d~lv~apTGsGKTl~~~lpal-------~~~~~~LVvsPt~~L~~qq~~~l~~ 235 (774)
+|.|...+|-|.+-+..+- .+-++++-||+|+|||.+-+-.++ ....+.|+.+-|..=++....+|+.
T Consensus 11 ~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 11 YFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred ecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHH
Confidence 6888899999987765543 356899999999999976432222 1234666666666655555555544
No 197
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.55 E-value=0.013 Score=67.94 Aligned_cols=61 Identities=23% Similarity=0.260 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHcCCCEEEEecCCCchHHH--HHHhhhcc------CCeEEEEccchHHHHHHHHHHHh
Q 004098 175 KNFQKEALSAWLAHHDCLVLAATGSGKSLC--FQIPALLT------GKVVVVISPLISLMHDQCSKLSK 235 (774)
Q Consensus 175 r~~Q~~ai~~il~g~d~lv~apTGsGKTl~--~~lpal~~------~~~~LVvsPt~~L~~qq~~~l~~ 235 (774)
.+.|++|+..++.++-+++.++.|+|||.+ .++-++.. ...+++.+||---+....+.+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 379999999999999999999999999975 23333321 15789999997766665555543
No 198
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.51 E-value=0.0034 Score=75.11 Aligned_cols=148 Identities=12% Similarity=0.059 Sum_probs=92.7
Q ss_pred CCCEEEEecCCCchHHHHHHhhhc---------------------cCCeEEEEccchHHHHHHHHHHHhc---CCcEEEE
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALL---------------------TGKVVVVISPLISLMHDQCSKLSKH---GVTACFL 243 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~---------------------~~~~~LVvsPt~~L~~qq~~~l~~~---gi~~~~l 243 (774)
|++++..-..|.|||.+-+...+. ..|.+|||+|. ++..||..++.++ ++++...
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEE
Confidence 678888999999999875543331 25789999995 8999999999986 4455444
Q ss_pred cCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHH------HH------------HHHhcCccEEEEecccccccCCCCc
Q 004098 244 GSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPL------QR------------LAESRGIALFAIDEVHCVSKWGHDF 305 (774)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~------~~------------~~~~~~i~~iVIDEaH~l~~~g~~f 305 (774)
.|-........ ..--.+|||++|+..|..-+..- +. .+-.-.|=.|++|||..+-.
T Consensus 453 ~Girk~~~~~~-~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves----- 526 (1394)
T KOG0298|consen 453 FGIRKTFWLSP-FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES----- 526 (1394)
T ss_pred echhhhcccCc-hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc-----
Confidence 33211111011 11235899999999997543211 00 01112345689999998843
Q ss_pred HHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCC
Q 004098 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHM 354 (774)
Q Consensus 306 r~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~ 354 (774)
.-.....+...++ ....=+.|+||-+. ..++.-.|.+
T Consensus 527 --ssS~~a~M~~rL~---------~in~W~VTGTPiq~-Iddl~~Ll~f 563 (1394)
T KOG0298|consen 527 --SSSAAAEMVRRLH---------AINRWCVTGTPIQK-IDDLFPLLEF 563 (1394)
T ss_pred --hHHHHHHHHHHhh---------hhceeeecCCchhh-hhhhHHHHHH
Confidence 2223333333343 56678999999887 6666655543
No 199
>PRK10536 hypothetical protein; Provisional
Probab=96.49 E-value=0.0037 Score=63.82 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=41.3
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhh---ccC--CeEEEEccchH
Q 004098 169 FGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTG--KVVVVISPLIS 224 (774)
Q Consensus 169 ~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal---~~~--~~~LVvsPt~~ 224 (774)
.++...+..|...+.++.++..+++.+|+|+|||+.....++ ..+ .+++|.-|+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC
Confidence 355667788999999999888889999999999987654443 222 35666667654
No 200
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.46 E-value=0.024 Score=52.99 Aligned_cols=93 Identities=20% Similarity=0.240 Sum_probs=61.7
Q ss_pred HHHHHHHHHhCCC------ceEEecCCCCHHHHHHHHHHHhcCC-ceEEEEecccccCcccCC--cceEEEeCCCCC---
Q 004098 525 TLSIAKYLCGFGV------KAAAYNASLPKSQLRRVHTEFHENK-LEVVVATIAFGMGIDKLN--VRRIIHYGWPQS--- 592 (774)
Q Consensus 525 ~~~l~~~L~~~g~------~~~~~h~~l~~~~R~~~~~~F~~g~-~~vLVAT~a~~~GIDip~--V~~VI~~d~p~s--- 592 (774)
.+.+...+...+. .-..+.-+....+...++++|+... -.||++|.-+.+|||+|+ ++.||..++|..
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCC
Confidence 3445555555443 1233444455556788999998654 379999988999999987 578999988731
Q ss_pred ----------------------------HHHHHHHhhccccCCCcceEEEEee
Q 004098 593 ----------------------------LEAYYQEAGRAGRDGHLADCVLYAN 617 (774)
Q Consensus 593 ----------------------------~~~y~Qr~GRaGR~G~~g~~il~~~ 617 (774)
.....|.+||+=|....--++++++
T Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 84 SPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred CHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1233588899988765444455554
No 201
>PRK14974 cell division protein FtsY; Provisional
Probab=96.43 E-value=0.12 Score=55.70 Aligned_cols=128 Identities=18% Similarity=0.134 Sum_probs=68.6
Q ss_pred CEEEEecCCCchHHHHHHh--hhc-cCCeEEEEcc--ch-HHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceE
Q 004098 190 DCLVLAATGSGKSLCFQIP--ALL-TGKVVVVISP--LI-SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSI 263 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lp--al~-~~~~~LVvsP--t~-~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~I 263 (774)
=+++++|+|+|||.+..-. .+. .+.+++++.. .| +-+.|........|+++.....+.....
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~------------ 209 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAA------------ 209 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHH------------
Confidence 4677899999999753322 222 3445655543 22 3344554555556776543222221111
Q ss_pred EEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHH
Q 004098 264 IYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343 (774)
Q Consensus 264 lv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~ 343 (774)
.+.+.+. .....+.++|+||.|.++.. -...+..|..+.+.. .++.-++.++||....
T Consensus 210 ------v~~~ai~----~~~~~~~DvVLIDTaGr~~~----~~~lm~eL~~i~~~~--------~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 210 ------VAYDAIE----HAKARGIDVVLIDTAGRMHT----DANLMDELKKIVRVT--------KPDLVIFVGDALAGND 267 (336)
T ss_pred ------HHHHHHH----HHHhCCCCEEEEECCCccCC----cHHHHHHHHHHHHhh--------CCceEEEeeccccchh
Confidence 0111111 12235678999999998852 133344444443322 2355688899998776
Q ss_pred HHHHHHHH
Q 004098 344 VREDILKS 351 (774)
Q Consensus 344 ~~~~i~~~ 351 (774)
..+.+...
T Consensus 268 ~~~~a~~f 275 (336)
T PRK14974 268 AVEQAREF 275 (336)
T ss_pred HHHHHHHH
Confidence 66555443
No 202
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.38 E-value=0.0056 Score=67.19 Aligned_cols=51 Identities=25% Similarity=0.307 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHH------HcCCCEEEEecCCCchHHHHHHhh--h-ccCCeEEEEccchH
Q 004098 174 LKNFQKEALSAW------LAHHDCLVLAATGSGKSLCFQIPA--L-LTGKVVVVISPLIS 224 (774)
Q Consensus 174 ~r~~Q~~ai~~i------l~g~d~lv~apTGsGKTl~~~lpa--l-~~~~~~LVvsPt~~ 224 (774)
+.+-|++++..+ ..+.+++|.+|-|+|||..+-... + ..+..+++++||--
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~ 61 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGI 61 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHH
Confidence 667899998888 467899999999999998653221 1 24668999999843
No 203
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.31 E-value=0.026 Score=52.87 Aligned_cols=93 Identities=19% Similarity=0.239 Sum_probs=60.4
Q ss_pred HHHHHHHHHhCCC---ceEEecCCCCHHHHHHHHHHHhcCCc---eEEEEecc--cccCcccCC--cceEEEeCCCC---
Q 004098 525 TLSIAKYLCGFGV---KAAAYNASLPKSQLRRVHTEFHENKL---EVVVATIA--FGMGIDKLN--VRRIIHYGWPQ--- 591 (774)
Q Consensus 525 ~~~l~~~L~~~g~---~~~~~h~~l~~~~R~~~~~~F~~g~~---~vLVAT~a--~~~GIDip~--V~~VI~~d~p~--- 591 (774)
.+.+++.+.+.+. ....+.-+....+...++++|++..- .||+++.- +++|||+|+ ++.||..++|.
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 4555666655443 12223323333355788889986533 68888887 999999987 67899999873
Q ss_pred -C---------------------------HHHHHHHhhccccCCCcceEEEEee
Q 004098 592 -S---------------------------LEAYYQEAGRAGRDGHLADCVLYAN 617 (774)
Q Consensus 592 -s---------------------------~~~y~Qr~GRaGR~G~~g~~il~~~ 617 (774)
+ .....|.+||+=|....--++++++
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1 1123688999999875544555554
No 204
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.27 E-value=0.14 Score=50.81 Aligned_cols=128 Identities=21% Similarity=0.183 Sum_probs=68.3
Q ss_pred EEEEecCCCchHHHHH-Hhhh--ccCCeEEEEcc--chHHHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHcCCceEE
Q 004098 191 CLVLAATGSGKSLCFQ-IPAL--LTGKVVVVISP--LISLMHDQCSKLSK-HGVTACFLGSGQPDNKVEQKALRGMYSII 264 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~-lpal--~~~~~~LVvsP--t~~L~~qq~~~l~~-~gi~~~~l~~~~~~~~~~~~~~~~~~~Il 264 (774)
+++++|||+|||.+.. |.+. .++.++.+|+- .|.=+.+|.+.+.+ .+++..........
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~--------------- 68 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDP--------------- 68 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCH---------------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhh---------------
Confidence 5789999999997633 2221 12444444332 33345555555544 46554443322211
Q ss_pred EEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHH
Q 004098 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQV 344 (774)
Q Consensus 265 v~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~ 344 (774)
..+ +..........+.++|+||-+-+... -......+..+.+... +.-..+.++||...+.
T Consensus 69 ----~~~---~~~~l~~~~~~~~D~vlIDT~Gr~~~----d~~~~~el~~~~~~~~--------~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 69 ----AEI---AREALEKFRKKGYDLVLIDTAGRSPR----DEELLEELKKLLEALN--------PDEVHLVLSATMGQED 129 (196)
T ss_dssp ----HHH---HHHHHHHHHHTTSSEEEEEE-SSSST----HHHHHHHHHHHHHHHS--------SSEEEEEEEGGGGGHH
T ss_pred ----HHH---HHHHHHHHhhcCCCEEEEecCCcchh----hHHHHHHHHHHhhhcC--------CccceEEEecccChHH
Confidence 111 11111222346689999999876532 2344556655555542 2445889999998877
Q ss_pred HHHHHHHc
Q 004098 345 REDILKSL 352 (774)
Q Consensus 345 ~~~i~~~L 352 (774)
...+....
T Consensus 130 ~~~~~~~~ 137 (196)
T PF00448_consen 130 LEQALAFY 137 (196)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 76665553
No 205
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.18 E-value=0.062 Score=49.72 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=16.0
Q ss_pred CCCEEEEecCCCchHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~ 206 (774)
++.+++.+|+|+|||....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 6789999999999996543
No 206
>PRK08727 hypothetical protein; Validated
Probab=96.08 E-value=0.054 Score=55.51 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=14.6
Q ss_pred cCccEEEEecccccccCC
Q 004098 285 RGIALFAIDEVHCVSKWG 302 (774)
Q Consensus 285 ~~i~~iVIDEaH~l~~~g 302 (774)
.+.++|||||+|.+..+.
T Consensus 92 ~~~dlLiIDDi~~l~~~~ 109 (233)
T PRK08727 92 EGRSLVALDGLESIAGQR 109 (233)
T ss_pred hcCCEEEEeCcccccCCh
Confidence 457899999999997544
No 207
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.24 Score=53.96 Aligned_cols=128 Identities=14% Similarity=0.110 Sum_probs=67.5
Q ss_pred CCEEEEecCCCchHHHHHHhhh---ccCCeEEEEcc--ch-HHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCce
Q 004098 189 HDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISP--LI-SLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS 262 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpal---~~~~~~LVvsP--t~-~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~ 262 (774)
+.+++++|||+|||......+. ..+.++.++.- .| +.+.|+.......++ .
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgi-----------------------p 298 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGF-----------------------E 298 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCC-----------------------c
Confidence 5678999999999976543332 22334433332 23 223333322222232 2
Q ss_pred EE-EEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCC
Q 004098 263 II-YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341 (774)
Q Consensus 263 Il-v~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~ 341 (774)
++ ..+|..+.+.+.. +....+.++|+||-+=+... -...+..+..+..... +..-++.++||..
T Consensus 299 v~v~~d~~~L~~aL~~---lk~~~~~DvVLIDTaGRs~k----d~~lm~EL~~~lk~~~--------PdevlLVLsATtk 363 (436)
T PRK11889 299 VIAVRDEAAMTRALTY---FKEEARVDYILIDTAGKNYR----ASETVEEMIETMGQVE--------PDYICLTLSASMK 363 (436)
T ss_pred EEecCCHHHHHHHHHH---HHhccCCCEEEEeCccccCc----CHHHHHHHHHHHhhcC--------CCeEEEEECCccC
Confidence 22 3356655543332 11123589999998876532 1334455544433221 2334677999987
Q ss_pred HHHHHHHHHHcCC
Q 004098 342 IQVREDILKSLHM 354 (774)
Q Consensus 342 ~~~~~~i~~~L~~ 354 (774)
.....++.+.+..
T Consensus 364 ~~d~~~i~~~F~~ 376 (436)
T PRK11889 364 SKDMIEIITNFKD 376 (436)
T ss_pred hHHHHHHHHHhcC
Confidence 7776667766653
No 208
>PRK08181 transposase; Validated
Probab=96.06 E-value=0.1 Score=54.43 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=26.6
Q ss_pred HHcCCCEEEEecCCCchHHHHHHhh---hccCCeEEEEccchHHHHHH
Q 004098 185 WLAHHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQ 229 (774)
Q Consensus 185 il~g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~L~~qq 229 (774)
+-.++++++++|+|+|||......+ +..+..+++ .+..+|+.+.
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f-~~~~~L~~~l 149 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLF-TRTTDLVQKL 149 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceee-eeHHHHHHHH
Confidence 3468899999999999995433222 223434443 4445555544
No 209
>PRK06526 transposase; Provisional
Probab=95.94 E-value=0.064 Score=55.59 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=19.0
Q ss_pred HHHHcCCCEEEEecCCCchHHHHH
Q 004098 183 SAWLAHHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 183 ~~il~g~d~lv~apTGsGKTl~~~ 206 (774)
.++-.++++++++|+|+|||....
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHH
Confidence 344467899999999999996543
No 210
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.89 E-value=0.084 Score=54.15 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=14.8
Q ss_pred CCCEEEEecCCCchHHHH
Q 004098 188 HHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~ 205 (774)
+..+++.+|+|+|||...
T Consensus 45 ~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357899999999999543
No 211
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.74 E-value=0.023 Score=58.91 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=50.7
Q ss_pred HHHHHHhcCCceEEEEecccccCcccCC--------cceEEEeCCCCCHHHHHHHhhccccCCCcce
Q 004098 553 RVHTEFHENKLEVVVATIAFGMGIDKLN--------VRRIIHYGWPQSLEAYYQEAGRAGRDGHLAD 611 (774)
Q Consensus 553 ~~~~~F~~g~~~vLVAT~a~~~GIDip~--------V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~ 611 (774)
...+.|.+|+..|+|-|.+++.||-+.. -|+-|...+|||....+|..||++|.|+...
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~ 118 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSA 118 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccC
Confidence 4556899999999999999999998863 2456678899999999999999999998643
No 212
>PRK06893 DNA replication initiation factor; Validated
Probab=95.72 E-value=0.047 Score=55.80 Aligned_cols=50 Identities=12% Similarity=0.142 Sum_probs=28.0
Q ss_pred cCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHH
Q 004098 285 RGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVR 345 (774)
Q Consensus 285 ~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~ 345 (774)
.+.++++|||+|.+.... .+... +..+...... .+.+++++|++.++...
T Consensus 90 ~~~dlLilDDi~~~~~~~-~~~~~---l~~l~n~~~~-------~~~~illits~~~p~~l 139 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNE-EWELA---IFDLFNRIKE-------QGKTLLLISADCSPHAL 139 (229)
T ss_pred ccCCEEEEeChhhhcCCh-HHHHH---HHHHHHHHHH-------cCCcEEEEeCCCChHHc
Confidence 457899999999986321 12222 2222222211 14567788888766544
No 213
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.66 E-value=0.078 Score=56.10 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=45.8
Q ss_pred HHhcCCCCCCHHHHHHHHHHHcCC--CEEEEecCCCchHHHHHHhhhc------cCCeEEEEccchHH
Q 004098 166 KKHFGHSSLKNFQKEALSAWLAHH--DCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISL 225 (774)
Q Consensus 166 ~~~~g~~~~r~~Q~~ai~~il~g~--d~lv~apTGsGKTl~~~lpal~------~~~~~LVvsPt~~L 225 (774)
++.+|+..-.-+|.-|+..++.-. =+.+.++-|+|||+.++..++. .-.++||-=|+..+
T Consensus 221 ~~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpv 288 (436)
T COG1875 221 QEVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPV 288 (436)
T ss_pred hhhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCc
Confidence 367899877788999999988643 2556779999999987777664 24578888887665
No 214
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.61 E-value=0.082 Score=63.49 Aligned_cols=54 Identities=22% Similarity=0.161 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHcC-CCEEEEecCCCchHHHHHH--hhh-ccCCeEEEEccchHHH
Q 004098 173 SLKNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQI--PAL-LTGKVVVVISPLISLM 226 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g-~d~lv~apTGsGKTl~~~l--pal-~~~~~~LVvsPt~~L~ 226 (774)
.+++-|++|+..++.+ +-+++.++.|+|||...-. -++ ..+..+++++||---+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa 409 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAA 409 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHH
Confidence 5899999999999874 5678899999999965322 222 2477899999995443
No 215
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.61 E-value=0.031 Score=51.32 Aligned_cols=38 Identities=24% Similarity=0.114 Sum_probs=26.1
Q ss_pred CCCEEEEecCCCchHHHHHHhhhcc-CC--eEEEEccchHH
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALLT-GK--VVVVISPLISL 225 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~~-~~--~~LVvsPt~~L 225 (774)
+..+++.+|+|+|||......+... .. .++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 5678999999999998765444332 22 47777775443
No 216
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.52 E-value=0.021 Score=61.04 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhh---h----ccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCC
Q 004098 174 LKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPA---L----LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSG 246 (774)
Q Consensus 174 ~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpa---l----~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~ 246 (774)
+++-|.++|.. ...+++|.|..|||||.+.+--+ + .....+|+|++|+..+.+....+....-.... .
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~---~ 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQ---E 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCH---C
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccc---c
Confidence 46889999988 57899999999999998644221 2 23468999999999999888888763100000 0
Q ss_pred CChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcC--ccEEEEeccc
Q 004098 247 QPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRG--IALFAIDEVH 296 (774)
Q Consensus 247 ~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~--i~~iVIDEaH 296 (774)
................+.|.|-..+..-+- ........ -.+-++|+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll--~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 SSDNERLRRQLSNIDRIYISTFHSFCYRLL--REYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CTT-HHHHHHHHHCTTSEEEEHHHHHHHHH--HHHHGGTTSHTTTEEECHHH
T ss_pred ccccccccccccccchheeehhhhhhhhhh--hhhhhhhhccccceeecchh
Confidence 001111122222234678888876653221 22222221 2456666655
No 217
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.51 E-value=0.16 Score=46.33 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=14.9
Q ss_pred EEEEecCCCchHHHHHHhh
Q 004098 191 CLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpa 209 (774)
+++.+|.|+|||......+
T Consensus 1 ill~G~~G~GKT~l~~~la 19 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALA 19 (132)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHH
Confidence 5889999999997654433
No 218
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.51 E-value=0.078 Score=55.43 Aligned_cols=89 Identities=20% Similarity=0.198 Sum_probs=49.7
Q ss_pred CCEEEEecCCCchHHHHHHhhh-----c-----cCCeEEEEccchHHHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHH
Q 004098 189 HDCLVLAATGSGKSLCFQIPAL-----L-----TGKVVVVISPLISLMHDQCSKLSK-HGVTACFLGSGQPDNKVEQKAL 257 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpal-----~-----~~~~~LVvsPt~~L~~qq~~~l~~-~gi~~~~l~~~~~~~~~~~~~~ 257 (774)
.+++++++||-|||.+..--.- . .-++++|-+|..+=....+..+-. +|.+..
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~---------------- 125 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR---------------- 125 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC----------------
Confidence 5899999999999986321111 1 124566666665555554444332 333211
Q ss_pred cCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCC
Q 004098 258 RGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWG 302 (774)
Q Consensus 258 ~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g 302 (774)
+-++...+......++..-+++++||||.|.++...
T Consensus 126 ---------~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs 161 (302)
T PF05621_consen 126 ---------PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS 161 (302)
T ss_pred ---------CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc
Confidence 001111111111334555679999999999987544
No 219
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.49 E-value=0.24 Score=50.18 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=32.3
Q ss_pred hcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHH---HHHHHHHHcC
Q 004098 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ---VREDILKSLH 353 (774)
Q Consensus 284 ~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~---~~~~i~~~L~ 353 (774)
....++++||..|.+... ...-..+..+...+... +.++|+.|..++.. ...++...|.
T Consensus 95 ~~~~DlL~iDDi~~l~~~----~~~q~~lf~l~n~~~~~-------~k~li~ts~~~P~~l~~~~~~L~SRl~ 156 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGK----QRTQEELFHLFNRLIES-------GKQLILTSDRPPSELSGLLPDLRSRLS 156 (219)
T ss_dssp HCTSSEEEEETGGGGTTH----HHHHHHHHHHHHHHHHT-------TSEEEEEESS-TTTTTTS-HHHHHHHH
T ss_pred hhcCCEEEEecchhhcCc----hHHHHHHHHHHHHHHhh-------CCeEEEEeCCCCccccccChhhhhhHh
Confidence 467999999999999642 11123333333333211 45666666555443 3456666664
No 220
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.45 E-value=0.1 Score=63.84 Aligned_cols=56 Identities=25% Similarity=0.175 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCC-EEEEecCCCchHHHHHH--hhhc-cCCeEEEEccchHHH
Q 004098 170 GHSSLKNFQKEALSAWLAHHD-CLVLAATGSGKSLCFQI--PALL-TGKVVVVISPLISLM 226 (774)
Q Consensus 170 g~~~~r~~Q~~ai~~il~g~d-~lv~apTGsGKTl~~~l--pal~-~~~~~LVvsPt~~L~ 226 (774)
|+ .+++-|.+|+..++.+++ ++|.++.|+|||.+... -++. .+..++.++||---+
T Consensus 344 g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA 403 (988)
T PRK13889 344 GL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAA 403 (988)
T ss_pred CC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHH
Confidence 44 599999999999998665 67899999999975221 1122 477899999985443
No 221
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.39 E-value=0.24 Score=50.41 Aligned_cols=98 Identities=21% Similarity=0.251 Sum_probs=60.0
Q ss_pred CCCEEEEecCCCchHHH-HH--Hhhhcc-CCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceE
Q 004098 188 HHDCLVLAATGSGKSLC-FQ--IPALLT-GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSI 263 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~-~~--lpal~~-~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~I 263 (774)
|.-++|.+|+|+|||.. ++ .-.+.. +.++++++- .+-..+..+.+..+|+.. ......+...+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~s~g~d~------------~~~~~~g~l~~ 85 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMKSFGWDL------------EEYEDSGKLKI 85 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHHTTTS-H------------HHHHHTTSEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHHHcCCcH------------HHHhhcCCEEE
Confidence 57899999999999964 33 334566 788888874 445577777787776521 11222333344
Q ss_pred EEEChH-------HHHHHHHHHHHHHHhcCccEEEEeccccc
Q 004098 264 IYVCPE-------TVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (774)
Q Consensus 264 lv~TPe-------~l~~ll~~~~~~~~~~~i~~iVIDEaH~l 298 (774)
+=+.++ .+..++..+...+...+.+.+|||-..-+
T Consensus 86 ~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 86 IDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp EESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred EecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 433443 23344555555555566799999998888
No 222
>PRK12377 putative replication protein; Provisional
Probab=95.36 E-value=0.18 Score=51.92 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=26.5
Q ss_pred CCCEEEEecCCCchHHHHHHh--hhccCCeEEEEccchHHHHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQIP--ALLTGKVVVVISPLISLMHDQCS 231 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lp--al~~~~~~LVvsPt~~L~~qq~~ 231 (774)
..++++.+|+|+|||...... .+...+..++..+..+|+.+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~ 146 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHE 146 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHH
Confidence 357899999999999543322 23334444455555566655443
No 223
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.32 E-value=0.21 Score=49.02 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=33.5
Q ss_pred EEEEecCCCchHHHHH---HhhhccCCeEEEEccchHHHHHHHHHHHhcCCc
Q 004098 191 CLVLAATGSGKSLCFQ---IPALLTGKVVVVISPLISLMHDQCSKLSKHGVT 239 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~---lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~ 239 (774)
++|.+|+|+|||...+ ...+..+..+++++. .+-..+..+.+..+|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~-e~~~~~~~~~~~~~g~~ 52 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL-EESPEELIENAESLGWD 52 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC-CCCHHHHHHHHHHcCCC
Confidence 6899999999997432 333456778888865 45567777777776653
No 224
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.30 E-value=0.46 Score=53.16 Aligned_cols=129 Identities=19% Similarity=0.167 Sum_probs=67.6
Q ss_pred CCCEEEEecCCCchHHHHH-Hhh-hc--c-CCeEEEEc--cchHHHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHcC
Q 004098 188 HHDCLVLAATGSGKSLCFQ-IPA-LL--T-GKVVVVIS--PLISLMHDQCSKLSK-HGVTACFLGSGQPDNKVEQKALRG 259 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~-lpa-l~--~-~~~~LVvs--Pt~~L~~qq~~~l~~-~gi~~~~l~~~~~~~~~~~~~~~~ 259 (774)
++.+++++|||+|||.+.. |.+ +. . +.++.+|. |.+.-+.+|...+.+ .+++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------------------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV------------------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce-------------------
Confidence 5568889999999996533 222 21 2 33444432 223223333333322 33322
Q ss_pred CceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEecc
Q 004098 260 MYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339 (774)
Q Consensus 260 ~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT 339 (774)
..+.+++.+...+. ...+.++|+||.+-+... . ......+..+.... ..+....+.++||
T Consensus 282 ---~~~~~~~~l~~~l~------~~~~~DlVlIDt~G~~~~-d---~~~~~~L~~ll~~~-------~~~~~~~LVl~a~ 341 (424)
T PRK05703 282 ---EVVYDPKELAKALE------QLRDCDVILIDTAGRSQR-D---KRLIEELKALIEFS-------GEPIDVYLVLSAT 341 (424)
T ss_pred ---EccCCHHhHHHHHH------HhCCCCEEEEeCCCCCCC-C---HHHHHHHHHHHhcc-------CCCCeEEEEEECC
Confidence 12234444433332 234689999999866421 1 22233343333310 0112347889999
Q ss_pred CCHHHHHHHHHHcCCC
Q 004098 340 ATIQVREDILKSLHMS 355 (774)
Q Consensus 340 ~~~~~~~~i~~~L~~~ 355 (774)
.......++...+...
T Consensus 342 ~~~~~l~~~~~~f~~~ 357 (424)
T PRK05703 342 TKYEDLKDIYKHFSRL 357 (424)
T ss_pred CCHHHHHHHHHHhCCC
Confidence 9998888888877543
No 225
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.28 E-value=0.25 Score=53.93 Aligned_cols=125 Identities=17% Similarity=0.125 Sum_probs=64.1
Q ss_pred cCCCEEEEecCCCchHHHHHHhhh---cc-C-CeEEEEc-cc-hHHHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHc
Q 004098 187 AHHDCLVLAATGSGKSLCFQIPAL---LT-G-KVVVVIS-PL-ISLMHDQCSKLSK-HGVTACFLGSGQPDNKVEQKALR 258 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~lpal---~~-~-~~~LVvs-Pt-~~L~~qq~~~l~~-~gi~~~~l~~~~~~~~~~~~~~~ 258 (774)
+|..+++++|||+|||.+....+. .. + .++.++. -+ +.=..+|...+.+ +|++...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~---------------- 199 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA---------------- 199 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe----------------
Confidence 367889999999999976543321 12 3 2333332 11 2123444444333 3443322
Q ss_pred CCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHH-HHHHHHHHHhcccccccccCCCCEEEEe
Q 004098 259 GMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDY-RRLSVLRENFGANNLKSLKFDIPLMALT 337 (774)
Q Consensus 259 ~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~-~~l~~l~~~~~~~~~~~l~~~~~il~lT 337 (774)
+-+++.+...+. .+.+.++|+||++-+.. +...+ ..+..+... ..+...++.++
T Consensus 200 ------~~~~~~l~~~l~------~l~~~DlVLIDTaG~~~-----~d~~l~e~La~L~~~--------~~~~~~lLVLs 254 (374)
T PRK14722 200 ------VKDGGDLQLALA------ELRNKHMVLIDTIGMSQ-----RDRTVSDQIAMLHGA--------DTPVQRLLLLN 254 (374)
T ss_pred ------cCCcccHHHHHH------HhcCCCEEEEcCCCCCc-----ccHHHHHHHHHHhcc--------CCCCeEEEEec
Confidence 233333322222 34567999999986442 11111 222222111 01123488999
Q ss_pred ccCCHHHHHHHHHHc
Q 004098 338 ATATIQVREDILKSL 352 (774)
Q Consensus 338 AT~~~~~~~~i~~~L 352 (774)
||.......++...+
T Consensus 255 Ats~~~~l~evi~~f 269 (374)
T PRK14722 255 ATSHGDTLNEVVQAY 269 (374)
T ss_pred CccChHHHHHHHHHH
Confidence 999888877776554
No 226
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.23 E-value=0.28 Score=52.76 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=23.6
Q ss_pred CCCEEEEecCCCchHHHHHH--hhhccCCeEEEEccchHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQI--PALLTGKVVVVISPLISLMH 227 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~l--pal~~~~~~LVvsPt~~L~~ 227 (774)
+.++++.+|||+|||..... -.+...+..++..+...|+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~ 224 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE 224 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH
Confidence 57899999999999964322 22233333333344444443
No 227
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.22 E-value=0.61 Score=50.71 Aligned_cols=135 Identities=16% Similarity=0.202 Sum_probs=75.7
Q ss_pred CCCEEEEecCCCchHHHHH-Hhhh----c-cCCeEEEEccch-HHHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHcC
Q 004098 188 HHDCLVLAATGSGKSLCFQ-IPAL----L-TGKVVVVISPLI-SLMHDQCSKLSK-HGVTACFLGSGQPDNKVEQKALRG 259 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~-lpal----~-~~~~~LVvsPt~-~L~~qq~~~l~~-~gi~~~~l~~~~~~~~~~~~~~~~ 259 (774)
++-+.+++|||-|||.+-. |.+. . +...+||-.-|- -=+..|...+.+ ++++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp-------------------- 262 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVP-------------------- 262 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCc--------------------
Confidence 6778899999999996522 2221 2 233445544432 223444444333 2333
Q ss_pred CceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEecc
Q 004098 260 MYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339 (774)
Q Consensus 260 ~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT 339 (774)
=.++-+|.-|...+. .+.+.++|.||=|-+= ++ +-..+..+...+... .+---.|.||||
T Consensus 263 --~~vv~~~~el~~ai~------~l~~~d~ILVDTaGrs------~~-D~~~i~el~~~~~~~-----~~i~~~Lvlsat 322 (407)
T COG1419 263 --LEVVYSPKELAEAIE------ALRDCDVILVDTAGRS------QY-DKEKIEELKELIDVS-----HSIEVYLVLSAT 322 (407)
T ss_pred --eEEecCHHHHHHHHH------HhhcCCEEEEeCCCCC------cc-CHHHHHHHHHHHhcc-----ccceEEEEEecC
Confidence 335556665544333 3455689999965432 32 223444455444321 112336899999
Q ss_pred CCHHHHHHHHHHcCCCCCceEEE
Q 004098 340 ATIQVREDILKSLHMSKGTKFVL 362 (774)
Q Consensus 340 ~~~~~~~~i~~~L~~~~~~~~~~ 362 (774)
.-.+...+|...+..-+-..++.
T Consensus 323 ~K~~dlkei~~~f~~~~i~~~I~ 345 (407)
T COG1419 323 TKYEDLKEIIKQFSLFPIDGLIF 345 (407)
T ss_pred cchHHHHHHHHHhccCCcceeEE
Confidence 99999999999887654333333
No 228
>PRK06921 hypothetical protein; Provisional
Probab=95.16 E-value=0.46 Score=49.64 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.9
Q ss_pred CCCEEEEecCCCchHHH
Q 004098 188 HHDCLVLAATGSGKSLC 204 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~ 204 (774)
+.++++.+|||+|||..
T Consensus 117 ~~~l~l~G~~G~GKThL 133 (266)
T PRK06921 117 KNSIALLGQPGSGKTHL 133 (266)
T ss_pred CCeEEEECCCCCcHHHH
Confidence 56899999999999954
No 229
>PRK04296 thymidine kinase; Provisional
Probab=95.14 E-value=0.087 Score=52.13 Aligned_cols=32 Identities=31% Similarity=0.269 Sum_probs=22.1
Q ss_pred CEEEEecCCCchHHHHHHhh---hccCCeEEEEcc
Q 004098 190 DCLVLAATGSGKSLCFQIPA---LLTGKVVVVISP 221 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsP 221 (774)
=.++.+|+|+|||...+--+ ...+.+++|+-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 36789999999996543222 235678888866
No 230
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=95.13 E-value=0.045 Score=38.19 Aligned_cols=36 Identities=25% Similarity=0.568 Sum_probs=31.1
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHH
Q 004098 8 RDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYI 43 (774)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (774)
+++.|..|++|||+.+++.+|+...+-....|++++
T Consensus 2 ~~~~v~~L~~mGf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 2 DEEKVQQLMEMGFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 368899999999999999999999998888888764
No 231
>PRK05642 DNA replication initiation factor; Validated
Probab=94.95 E-value=0.22 Score=51.10 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=13.5
Q ss_pred CCEEEEecCCCchHHH
Q 004098 189 HDCLVLAATGSGKSLC 204 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~ 204 (774)
..+++.+|+|+|||..
T Consensus 46 ~~l~l~G~~G~GKTHL 61 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL 61 (234)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4678999999999954
No 232
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.93 E-value=0.14 Score=52.07 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.5
Q ss_pred CCCEEEEecCCCchHHH
Q 004098 188 HHDCLVLAATGSGKSLC 204 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~ 204 (774)
++.+++.+|+|+|||..
T Consensus 42 ~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45799999999999954
No 233
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.80 E-value=0.24 Score=46.90 Aligned_cols=35 Identities=31% Similarity=0.276 Sum_probs=23.7
Q ss_pred EEEEecCCCchHHHHHHhh---hccCCeEEEEccchHH
Q 004098 191 CLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISL 225 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~L 225 (774)
+++.+|+|+|||......+ ...++.++++..-..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 5789999999997543322 2246777877765444
No 234
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.79 E-value=1.5 Score=45.76 Aligned_cols=130 Identities=15% Similarity=0.128 Sum_probs=72.0
Q ss_pred cCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEcc-c--hHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCC
Q 004098 187 AHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISP-L--ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGM 260 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsP-t--~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~ 260 (774)
.+..+++++|+|+|||..+...+.. .+..+.+++- + .+.+.|+.......++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~---------------------- 131 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGF---------------------- 131 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCc----------------------
Confidence 3467888999999999876543322 2344444432 2 2345555444333332
Q ss_pred ceEEE-EChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEecc
Q 004098 261 YSIIY-VCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339 (774)
Q Consensus 261 ~~Ilv-~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT 339 (774)
.+.. .+|+.+.+.+. .+....+.++++||-+=+... =...+..+..+.+... +..-++.++||
T Consensus 132 -~~~~~~~~~~l~~~l~---~l~~~~~~D~ViIDt~Gr~~~----~~~~l~el~~~~~~~~--------~~~~~LVl~a~ 195 (270)
T PRK06731 132 -EVIAVRDEAAMTRALT---YFKEEARVDYILIDTAGKNYR----ASETVEEMIETMGQVE--------PDYICLTLSAS 195 (270)
T ss_pred -eEEecCCHHHHHHHHH---HHHhcCCCCEEEEECCCCCcC----CHHHHHHHHHHHhhhC--------CCeEEEEEcCc
Confidence 3322 34554443333 222234689999999876531 1344555554443321 23347789999
Q ss_pred CCHHHHHHHHHHcCC
Q 004098 340 ATIQVREDILKSLHM 354 (774)
Q Consensus 340 ~~~~~~~~i~~~L~~ 354 (774)
...+...++.+.+..
T Consensus 196 ~~~~d~~~~~~~f~~ 210 (270)
T PRK06731 196 MKSKDMIEIITNFKD 210 (270)
T ss_pred cCHHHHHHHHHHhCC
Confidence 877666667666543
No 235
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.69 E-value=0.029 Score=62.20 Aligned_cols=59 Identities=31% Similarity=0.360 Sum_probs=49.4
Q ss_pred CEEEEecCCCchHHHHHHhhhc-cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCC
Q 004098 190 DCLVLAATGSGKSLCFQIPALL-TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQP 248 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpal~-~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~ 248 (774)
+++|++|||+|||.++++|.++ ..+.+||+-|.-+|.......+++.|.++..+.-...
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~nP~~~ 60 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFVFDPTNP 60 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 4799999999999999999876 4678999999999998888887778888877765433
No 236
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.68 E-value=0.48 Score=56.30 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=13.2
Q ss_pred cCccEEEEeccccccc
Q 004098 285 RGIALFAIDEVHCVSK 300 (774)
Q Consensus 285 ~~i~~iVIDEaH~l~~ 300 (774)
..+.+|||||+|.+..
T Consensus 868 r~v~IIILDEID~L~k 883 (1164)
T PTZ00112 868 RNVSILIIDEIDYLIT 883 (1164)
T ss_pred ccceEEEeehHhhhCc
Confidence 3467899999999975
No 237
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.67 E-value=0.3 Score=54.94 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=14.1
Q ss_pred cCccEEEEecccccccC
Q 004098 285 RGIALFAIDEVHCVSKW 301 (774)
Q Consensus 285 ~~i~~iVIDEaH~l~~~ 301 (774)
...++++|||+|.+..+
T Consensus 201 ~~~dvLiIDDiq~l~~k 217 (445)
T PRK12422 201 RNVDALFIEDIEVFSGK 217 (445)
T ss_pred ccCCEEEEcchhhhcCC
Confidence 46899999999998753
No 238
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.63 E-value=0.12 Score=53.64 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=33.0
Q ss_pred cCCCEEEEecCCCchHHHHHHh--hhccCCeEEEEccchHHHHHHHHHHH
Q 004098 187 AHHDCLVLAATGSGKSLCFQIP--ALLTGKVVVVISPLISLMHDQCSKLS 234 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~lp--al~~~~~~LVvsPt~~L~~qq~~~l~ 234 (774)
++.++++.+|+|+|||..+... .+.+.+.-+.++++-+|+.+....+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHh
Confidence 5789999999999999654322 23355666666677777776655543
No 239
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.62 E-value=0.59 Score=48.04 Aligned_cols=17 Identities=18% Similarity=0.256 Sum_probs=14.2
Q ss_pred CCEEEEecCCCchHHHH
Q 004098 189 HDCLVLAATGSGKSLCF 205 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~ 205 (774)
..+++.+++|+|||...
T Consensus 100 ~~~~l~G~~GtGKThLa 116 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLA 116 (244)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999643
No 240
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=94.59 E-value=0.054 Score=55.47 Aligned_cols=83 Identities=12% Similarity=0.016 Sum_probs=61.2
Q ss_pred CCeEEEEccchHHHHHHHHHHHhcC---CcEEEEcCCCChH-HHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCcc
Q 004098 213 GKVVVVISPLISLMHDQCSKLSKHG---VTACFLGSGQPDN-KVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (774)
Q Consensus 213 ~~~~LVvsPt~~L~~qq~~~l~~~g---i~~~~l~~~~~~~-~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~ 288 (774)
.+.+|||+..--=+.+..+.++.+. ..++-+.+-...- +....+.....+|.|+||+|+..+++ .+.+.+.++.
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle--~~~L~l~~l~ 203 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLE--NGALSLSNLK 203 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHH--cCCCCcccCe
Confidence 5778888886444889999999873 4455555554332 33333444688999999999999997 7777889999
Q ss_pred EEEEecccc
Q 004098 289 LFAIDEVHC 297 (774)
Q Consensus 289 ~iVIDEaH~ 297 (774)
+||||--|.
T Consensus 204 ~ivlD~s~~ 212 (252)
T PF14617_consen 204 RIVLDWSYL 212 (252)
T ss_pred EEEEcCCcc
Confidence 999997653
No 241
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.53 E-value=0.9 Score=51.52 Aligned_cols=56 Identities=21% Similarity=0.224 Sum_probs=32.4
Q ss_pred cCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcC
Q 004098 285 RGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (774)
Q Consensus 285 ~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~ 353 (774)
.+.++|+||.+-+... -......+..+..... ...++.++++.......++.+.+.
T Consensus 427 ~~~DLVLIDTaG~s~~----D~~l~eeL~~L~aa~~---------~a~lLVLpAtss~~Dl~eii~~f~ 482 (559)
T PRK12727 427 RDYKLVLIDTAGMGQR----DRALAAQLNWLRAARQ---------VTSLLVLPANAHFSDLDEVVRRFA 482 (559)
T ss_pred ccCCEEEecCCCcchh----hHHHHHHHHHHHHhhc---------CCcEEEEECCCChhHHHHHHHHHH
Confidence 4679999999866421 0112222322322211 356888999987766666666553
No 242
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.44 E-value=0.36 Score=50.60 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=55.5
Q ss_pred HHcCCCEEEEecCCCchHHH-HHHhh--hcc-CCeEEEEccchHHHHHHHHHHHhc--CCcEEEEc--CCCChHHHHH--
Q 004098 185 WLAHHDCLVLAATGSGKSLC-FQIPA--LLT-GKVVVVISPLISLMHDQCSKLSKH--GVTACFLG--SGQPDNKVEQ-- 254 (774)
Q Consensus 185 il~g~d~lv~apTGsGKTl~-~~lpa--l~~-~~~~LVvsPt~~L~~qq~~~l~~~--gi~~~~l~--~~~~~~~~~~-- 254 (774)
+..|.-+++.++||+|||.. .++.. ... +..+++++-- .-..+....+... ++...... ..........
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E-~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE-EPVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAF 105 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc-cCHHHHHHHHHHHHhCCCcccCCccccccHHHHHHHH
Confidence 34577889999999999963 33322 223 6678887642 2234444444332 33221110 0111111111
Q ss_pred HHHcCCceEE-EEChH--HHHHHHHHHHHHHHhcCccEEEEeccccccc
Q 004098 255 KALRGMYSII-YVCPE--TVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (774)
Q Consensus 255 ~~~~~~~~Il-v~TPe--~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~ 300 (774)
..+.....+. +-.+. .+..++..+.......++++||||..+.+..
T Consensus 106 ~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 106 DEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhc
Confidence 1111111222 22221 2223333334444445799999999998864
No 243
>PHA02533 17 large terminase protein; Provisional
Probab=94.43 E-value=0.16 Score=58.32 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhh-----ccCCeEEEEccchHHHHHHHHHHHh
Q 004098 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL-----LTGKVVVVISPLISLMHDQCSKLSK 235 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal-----~~~~~~LVvsPt~~L~~qq~~~l~~ 235 (774)
.|.|+|.+.+..+..++-.++..+=..|||.+....++ ..+..+++++|+..-+...++.++.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 47899999999876667778889999999986553332 3466999999999988877777764
No 244
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.32 E-value=0.28 Score=54.85 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=13.6
Q ss_pred CEEEEecCCCchHHHH
Q 004098 190 DCLVLAATGSGKSLCF 205 (774)
Q Consensus 190 d~lv~apTGsGKTl~~ 205 (774)
.+++.+|+|+|||...
T Consensus 138 ~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL 153 (405)
T ss_pred eEEEECCCCCcHHHHH
Confidence 4789999999999654
No 245
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.31 E-value=0.1 Score=62.23 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=65.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc-cccCcccCCcceEE
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-FGMGIDKLNVRRII 585 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a-~~~GIDip~V~~VI 585 (774)
.+.+++|.++|+.-+.++++.+++ .|+++..+||+++..+|..+++.+.+|+.+|+|+|.+ +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 456899999999999988887765 3789999999999999999999999999999999975 44567788999888
No 246
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.29 E-value=0.042 Score=62.69 Aligned_cols=60 Identities=32% Similarity=0.454 Sum_probs=50.5
Q ss_pred CCEEEEecCCCchHHHHHHhhhcc-CCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCC
Q 004098 189 HDCLVLAATGSGKSLCFQIPALLT-GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQP 248 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpal~~-~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~ 248 (774)
.++++++|||||||..+++|.++. .+.+||.-|--+|.......+++.|.++..+.-..+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vldp~~~ 105 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVLDPFDP 105 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCCEEEEeecccc
Confidence 579999999999999999998764 568999999999999888888888877777665443
No 247
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.21 E-value=0.11 Score=61.67 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=64.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeC
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCGF-GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYG 588 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d 588 (774)
+.++||.++++..+.++.+.|++. |..+..+||+++..+|.+...+..+|+.+|+|+|...-. +.+.++.+||.-+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 458999999999999999999874 888999999999999999999999999999999974322 5667888887544
No 248
>PRK08116 hypothetical protein; Validated
Probab=94.14 E-value=0.88 Score=47.61 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=23.3
Q ss_pred CEEEEecCCCchHHHHHHhh--hccCCeEEEEccchHHHHHHH
Q 004098 190 DCLVLAATGSGKSLCFQIPA--LLTGKVVVVISPLISLMHDQC 230 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa--l~~~~~~LVvsPt~~L~~qq~ 230 (774)
-+++.+++|+|||..+...+ +...+..++..+...|+.+..
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~ 158 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIK 158 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 39999999999996543322 222233334444455554433
No 249
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=94.09 E-value=0.037 Score=69.40 Aligned_cols=94 Identities=20% Similarity=0.275 Sum_probs=77.9
Q ss_pred cEEEEeCchHHHHHHHHHHHhCC-CceEEecCCCC-----------HHHHHHHHHHHhcCCceEEEEecccccCcccCCc
Q 004098 514 LTIIYVPTRKETLSIAKYLCGFG-VKAAAYNASLP-----------KSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNV 581 (774)
Q Consensus 514 ~~IIF~~sr~~~~~l~~~L~~~g-~~~~~~h~~l~-----------~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V 581 (774)
.+|+||+.+..+..+.+.++... .....+.|.+. ...+.+++..|....+++|++|+++..|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 68999999999999999887642 22233444322 2246788899999999999999999999999999
Q ss_pred ceEEEeCCCCCHHHHHHHhhccccCC
Q 004098 582 RRIIHYGWPQSLEAYYQEAGRAGRDG 607 (774)
Q Consensus 582 ~~VI~~d~p~s~~~y~Qr~GRaGR~G 607 (774)
+.|++++.|.....|+|+.||+-+.+
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999996553
No 250
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.04 E-value=1.5 Score=47.82 Aligned_cols=129 Identities=16% Similarity=0.116 Sum_probs=62.0
Q ss_pred CCCEEEEecCCCchHHHHHHhhh---ccCCeEEEEc--cchHHH-HHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCc
Q 004098 188 HHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVIS--PLISLM-HDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMY 261 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal---~~~~~~LVvs--Pt~~L~-~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~ 261 (774)
++-+++++|||+|||....-.+. ..+.++.+|+ |.+.=+ .|+.......+++.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv--------------------- 264 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL--------------------- 264 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE---------------------
Confidence 56788999999999965432221 2233333332 122212 22222222222221
Q ss_pred eEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCC
Q 004098 262 SIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341 (774)
Q Consensus 262 ~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~ 341 (774)
.+..+|+.+...+. ........++|+||=+=+... -...+..+..+..... +..-++.++||..
T Consensus 265 -~~~~dp~dL~~al~---~l~~~~~~D~VLIDTAGr~~~----d~~~l~EL~~l~~~~~--------p~~~~LVLsag~~ 328 (407)
T PRK12726 265 -IVATSPAELEEAVQ---YMTYVNCVDHILIDTVGRNYL----AEESVSEISAYTDVVH--------PDLTCFTFSSGMK 328 (407)
T ss_pred -EecCCHHHHHHHHH---HHHhcCCCCEEEEECCCCCcc----CHHHHHHHHHHhhccC--------CceEEEECCCccc
Confidence 12235665543332 121224578999997765421 1334444544433221 2333566777776
Q ss_pred HHHHHHHHHHcC
Q 004098 342 IQVREDILKSLH 353 (774)
Q Consensus 342 ~~~~~~i~~~L~ 353 (774)
.....++...+.
T Consensus 329 ~~d~~~i~~~f~ 340 (407)
T PRK12726 329 SADVMTILPKLA 340 (407)
T ss_pred HHHHHHHHHhcC
Confidence 655555655543
No 251
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.98 E-value=0.52 Score=55.44 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=15.0
Q ss_pred EEEEecCCCchHHHHHHhh
Q 004098 191 CLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpa 209 (774)
+|+.+|.|+|||.+..+.+
T Consensus 41 yLFtGPpGvGKTTlAriLA 59 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRIFA 59 (830)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5889999999997655443
No 252
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.98 E-value=0.13 Score=58.95 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=64.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeC
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCGF-GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYG 588 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d 588 (774)
+.++||.++++.-+.++++.|++. +..+..+||+++..+|.+...+..+|+.+|+|+|...-. ..++++.+||.-+
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 458999999999999999999864 778999999999999999999999999999999975332 4567788877443
No 253
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.97 E-value=0.17 Score=54.43 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=23.6
Q ss_pred CCEEEEecCCCchHHHHHHhhhccCCeEEEEccc
Q 004098 189 HDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 222 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt 222 (774)
.++|+.+|+|+|||..+.+.+-..+....-++.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 3799999999999988766654444444444443
No 254
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.93 E-value=1.4 Score=48.85 Aligned_cols=128 Identities=19% Similarity=0.145 Sum_probs=66.8
Q ss_pred cCCCEEEEecCCCchHHHHHHhh-h---cc--CCeEEEEccchHH-HHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHc
Q 004098 187 AHHDCLVLAATGSGKSLCFQIPA-L---LT--GKVVVVISPLISL-MHDQCSKLSK-HGVTACFLGSGQPDNKVEQKALR 258 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~lpa-l---~~--~~~~LVvsPt~~L-~~qq~~~l~~-~gi~~~~l~~~~~~~~~~~~~~~ 258 (774)
.|+-+.+++|||+|||......+ . .. ....++...+--. ..+|...+.+ +|++...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~---------------- 253 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRS---------------- 253 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceec----------------
Confidence 35568889999999997654222 1 11 2345555555222 3333333332 3443322
Q ss_pred CCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEec
Q 004098 259 GMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTA 338 (774)
Q Consensus 259 ~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTA 338 (774)
+-++..+... +..+.+.+++.||.+=+ .+.-......+..+.... .+...+|.|+|
T Consensus 254 ------v~~~~dl~~a------l~~l~~~d~VLIDTaGr----sqrd~~~~~~l~~l~~~~--------~~~~~~LVl~a 309 (420)
T PRK14721 254 ------IKDIADLQLM------LHELRGKHMVLIDTVGM----SQRDQMLAEQIAMLSQCG--------TQVKHLLLLNA 309 (420)
T ss_pred ------CCCHHHHHHH------HHHhcCCCEEEecCCCC----CcchHHHHHHHHHHhccC--------CCceEEEEEcC
Confidence 2223322211 12345678999998622 211122233343332111 12345788999
Q ss_pred cCCHHHHHHHHHHcCC
Q 004098 339 TATIQVREDILKSLHM 354 (774)
Q Consensus 339 T~~~~~~~~i~~~L~~ 354 (774)
|.......++...+..
T Consensus 310 t~~~~~~~~~~~~f~~ 325 (420)
T PRK14721 310 TSSGDTLDEVISAYQG 325 (420)
T ss_pred CCCHHHHHHHHHHhcC
Confidence 9988888888877653
No 255
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.92 E-value=0.12 Score=61.34 Aligned_cols=63 Identities=19% Similarity=0.347 Sum_probs=53.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----C-CceEE-ecCCCCHHHHHHHHHHHhcCCceEEEEecccc
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGF----G-VKAAA-YNASLPKSQLRRVHTEFHENKLEVVVATIAFG 573 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~----g-~~~~~-~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~ 573 (774)
.+.++++.++|.--+.++++.|.+. + ..+.. ||+.|+.++++.++++|.+|+++|||+|+.|-
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFL 192 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHH
Confidence 5678999999999999999988763 2 33333 99999999999999999999999999998753
No 256
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.88 E-value=0.62 Score=52.32 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=16.0
Q ss_pred EEEEecCCCchHHHHHHhh
Q 004098 191 CLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpa 209 (774)
.|+.+|.|+|||.++.+.+
T Consensus 43 ~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6999999999998766554
No 257
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.88 E-value=0.87 Score=46.73 Aligned_cols=107 Identities=17% Similarity=0.184 Sum_probs=59.2
Q ss_pred CCCEEEEecCCCchHHH-HHH--hhhccCCeEEEEccchHHHHHHHHHHHhcCCcE---------EEEcCCCChHHHHHH
Q 004098 188 HHDCLVLAATGSGKSLC-FQI--PALLTGKVVVVISPLISLMHDQCSKLSKHGVTA---------CFLGSGQPDNKVEQK 255 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~-~~l--pal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~---------~~l~~~~~~~~~~~~ 255 (774)
|.-++|.+|+|+|||.. .++ -.+..+.++++++ +-+-..+..+.+..+|+.. ..+..-... ...
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs-~ee~~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~~~~--~~~- 96 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA-LEEHPVQVRRNMAQFGWDVRKYEEEGKFAIVDAFTGG--IGE- 96 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE-eeCCHHHHHHHHHHhCCCHHHHhhcCCEEEEeccccc--ccc-
Confidence 67899999999999974 332 3345677888887 4556667777777766431 111110000 000
Q ss_pred HHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 256 ALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 256 ~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
.......++..|..+..++..+.......+.+++|||=..-+.
T Consensus 97 -~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~ 139 (237)
T TIGR03877 97 -AAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLY 139 (237)
T ss_pred -ccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhh
Confidence 0001112222343343444444445555578999999877653
No 258
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.86 E-value=0.78 Score=50.98 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=15.0
Q ss_pred CCEEEEecCCCchHHHH
Q 004098 189 HDCLVLAATGSGKSLCF 205 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~ 205 (774)
.++++.+|+|+|||.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999764
No 259
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.86 E-value=0.62 Score=48.61 Aligned_cols=20 Identities=20% Similarity=0.296 Sum_probs=16.2
Q ss_pred CCEEEEecCCCchHHHHHHh
Q 004098 189 HDCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lp 208 (774)
.++++.+|+|+|||..+-+.
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 47899999999999775433
No 260
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.77 E-value=0.49 Score=54.93 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=16.0
Q ss_pred CEEEEecCCCchHHHHHHhh
Q 004098 190 DCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa 209 (774)
-+|+.+|.|.|||.++.+.+
T Consensus 39 AyLF~GPpGvGKTTlAriLA 58 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILA 58 (702)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35899999999998765554
No 261
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=93.75 E-value=0.12 Score=35.98 Aligned_cols=36 Identities=33% Similarity=0.610 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHHH
Q 004098 9 DEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYIL 44 (774)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (774)
++.++.|++|||+..++.+|+...+-....|+++++
T Consensus 2 ~~~v~~L~~mGf~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 2 EEKIDQLLEMGFSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 568999999999999999999999987888887763
No 262
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.71 E-value=0.42 Score=54.14 Aligned_cols=18 Identities=17% Similarity=0.384 Sum_probs=14.6
Q ss_pred CCEEEEecCCCchHHHHH
Q 004098 189 HDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~ 206 (774)
..+++.+|+|+|||....
T Consensus 149 ~~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458999999999996543
No 263
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.70 E-value=0.32 Score=52.08 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHc-CCCEEEEecCCCchHHH--HHHhhh---ccCCeEEEEccchHHH
Q 004098 173 SLKNFQKEALSAWLA-HHDCLVLAATGSGKSLC--FQIPAL---LTGKVVVVISPLISLM 226 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~-g~d~lv~apTGsGKTl~--~~lpal---~~~~~~LVvsPt~~L~ 226 (774)
.+.+.|.+.+..++. +.+++++++||||||.. +++-.+ ....++++|=.+.||.
T Consensus 128 ~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 128 IMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccc
Confidence 477888888777665 67999999999999954 223333 2345777777777763
No 264
>PRK05973 replicative DNA helicase; Provisional
Probab=93.69 E-value=1.4 Score=45.00 Aligned_cols=55 Identities=22% Similarity=0.193 Sum_probs=36.5
Q ss_pred HHHcCCCEEEEecCCCchHHHHH---HhhhccCCeEEEEccchHHHHHHHHHHHhcCCc
Q 004098 184 AWLAHHDCLVLAATGSGKSLCFQ---IPALLTGKVVVVISPLISLMHDQCSKLSKHGVT 239 (774)
Q Consensus 184 ~il~g~d~lv~apTGsGKTl~~~---lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~ 239 (774)
-+..|.-++|.+++|+|||...+ .-+...+..+++++-- +=..|..+.+..+|+.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE-es~~~i~~R~~s~g~d 117 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE-YTEQDVRDRLRALGAD 117 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe-CCHHHHHHHHHHcCCC
Confidence 33446678889999999997533 2233456678887643 3356777777777653
No 265
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.64 E-value=0.33 Score=49.28 Aligned_cols=19 Identities=32% Similarity=0.356 Sum_probs=16.0
Q ss_pred CCCEEEEecCCCchHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~ 206 (774)
+..+++.+|+|+|||....
T Consensus 38 ~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5689999999999997643
No 266
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=93.63 E-value=0.068 Score=62.02 Aligned_cols=58 Identities=29% Similarity=0.338 Sum_probs=50.8
Q ss_pred CCEEEEecCCCchHHHHHHhhhcc-CCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCC
Q 004098 189 HDCLVLAATGSGKSLCFQIPALLT-GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSG 246 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpal~~-~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~ 246 (774)
++++++||||||||..+++|.++. ++-+||+=|.-++........++.|.++..+.-.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vfdP~ 217 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWEPA 217 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 579999999999999999998765 6789999999999999998888889888777644
No 267
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.61 E-value=0.15 Score=57.07 Aligned_cols=99 Identities=14% Similarity=0.157 Sum_probs=54.8
Q ss_pred EEecCCCchHHHHHHhhhc--cC--CeEEEEccchHHHHHHHHHHHh-----c-----------CCcEEEEcCCCChHHH
Q 004098 193 VLAATGSGKSLCFQIPALL--TG--KVVVVISPLISLMHDQCSKLSK-----H-----------GVTACFLGSGQPDNKV 252 (774)
Q Consensus 193 v~apTGsGKTl~~~lpal~--~~--~~~LVvsPt~~L~~qq~~~l~~-----~-----------gi~~~~l~~~~~~~~~ 252 (774)
..|.||||||++..-.+|. .. ...|+.+..-..+......+.. + .|+.-.+..=.
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fs----- 76 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFS----- 76 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccC-----
Confidence 3589999999976555542 22 2466666654544443333221 0 01111111100
Q ss_pred HHHHHcCCceEEEEChHHHHHHHHHHH----HHHHhcCccEEEE-ecccccc
Q 004098 253 EQKALRGMYSIIYVCPETVIRLIKPLQ----RLAESRGIALFAI-DEVHCVS 299 (774)
Q Consensus 253 ~~~~~~~~~~Ilv~TPe~l~~ll~~~~----~~~~~~~i~~iVI-DEaH~l~ 299 (774)
-.+....|.++|.+.|...+..-. -+.++.+..+|.| ||||++-
T Consensus 77 ---ehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 77 ---EHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred ---ccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 024567999999999876544211 1334555666655 9999984
No 268
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.57 E-value=0.95 Score=46.46 Aligned_cols=107 Identities=20% Similarity=0.221 Sum_probs=53.7
Q ss_pred cCCCEEEEecCCCchHHHHH-H--hhhcc-CCeEEEEcc---chHHHHHHHHHHHhcCCcEEEEcCCCChHHHH------
Q 004098 187 AHHDCLVLAATGSGKSLCFQ-I--PALLT-GKVVVVISP---LISLMHDQCSKLSKHGVTACFLGSGQPDNKVE------ 253 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~-l--pal~~-~~~~LVvsP---t~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~------ 253 (774)
.|.=+++.+++|+|||...+ + -+... +..+++++. ..+++....... .++....+..+.......
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 89 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASE--SGISLSKLRTGSLSDEDWERLAEA 89 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHh--cCCCHHHHhcCCCCHHHHHHHHHH
Confidence 36678889999999996432 2 22233 778888873 334444333222 233222122221111101
Q ss_pred HHHHcCCceEEE-----EChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 254 QKALRGMYSIIY-----VCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 254 ~~~~~~~~~Ilv-----~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
...... ..+.+ .|++.+...+ .......++++||||=.+.+.
T Consensus 90 ~~~~~~-~~~~i~~~~~~~~~~l~~~i---~~~~~~~~~~~vvID~l~~l~ 136 (242)
T cd00984 90 IGELKE-LPIYIDDSSSLTVSDIRSRA---RRLKKEHGLGLIVIDYLQLMS 136 (242)
T ss_pred HHHHhc-CCEEEeCCCCCCHHHHHHHH---HHHHHhcCCCEEEEcCchhcC
Confidence 011112 23333 2444444333 333344589999999988774
No 269
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=93.56 E-value=0.43 Score=49.54 Aligned_cols=106 Identities=23% Similarity=0.408 Sum_probs=61.0
Q ss_pred HHHHHHHcC-----CCEEEEecCCCchH-HHHHHhhhc--------cCCeEEEEccchHHHHHHHHHH-HhcCCcEEEEc
Q 004098 180 EALSAWLAH-----HDCLVLAATGSGKS-LCFQIPALL--------TGKVVVVISPLISLMHDQCSKL-SKHGVTACFLG 244 (774)
Q Consensus 180 ~ai~~il~g-----~d~lv~apTGsGKT-l~~~lpal~--------~~~~~LVvsPt~~L~~qq~~~l-~~~gi~~~~l~ 244 (774)
..+..+|.| .=+=+++|.|+||| +|.++.+-. .++.+++|.-.-..-.+-..++ ++++.
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~------ 98 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGL------ 98 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS------
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhcccc------
Confidence 477777764 33557899999999 455554321 2568999865443322222222 22321
Q ss_pred CCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 004098 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (774)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l 298 (774)
.. ...+..-.-.-+.+.+.+..++..+...+...++++||||-.-.+
T Consensus 99 ---~~----~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 99 ---DP----EEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp ----H----HHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHH
T ss_pred ---cc----chhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHH
Confidence 11 123332222233456777777776666666688999999998766
No 270
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=1.3 Score=45.84 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=67.9
Q ss_pred HHHHcCC-----CEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHH
Q 004098 183 SAWLAHH-----DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL 257 (774)
Q Consensus 183 ~~il~g~-----d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~ 257 (774)
|.+..|+ -+|+.+|+|+|||..+-..+-..+ .+.+-+....|+..|.-+
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSSSDLvSKWmGE------------------------- 209 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-STFFSVSSSDLVSKWMGE------------------------- 209 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeehHHHHHHHhcc-------------------------
Confidence 4455553 488999999999965433333323 344444444444433311
Q ss_pred cCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCC-cHHHHHHHHHHHHHhcccccccccC-CCCEEE
Q 004098 258 RGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD-FRPDYRRLSVLRENFGANNLKSLKF-DIPLMA 335 (774)
Q Consensus 258 ~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~-fr~~~~~l~~l~~~~~~~~~~~l~~-~~~il~ 335 (774)
.|+|. .++......+.-++|.|||.|.+-..+.. -...-++|.. .|-.. ++.+.. +--+|.
T Consensus 210 ----------SEkLV---knLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKT---EfLVQ-MqGVG~d~~gvLV 272 (439)
T KOG0739|consen 210 ----------SEKLV---KNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKT---EFLVQ-MQGVGNDNDGVLV 272 (439)
T ss_pred ----------HHHHH---HHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHH---HHHHh-hhccccCCCceEE
Confidence 22332 23334445567899999999987543322 2233344421 11100 122222 345899
Q ss_pred EeccCCHHHHHHHHHH
Q 004098 336 LTATATIQVREDILKS 351 (774)
Q Consensus 336 lTAT~~~~~~~~i~~~ 351 (774)
|.||-.+.+....+..
T Consensus 273 LgATNiPw~LDsAIRR 288 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRR 288 (439)
T ss_pred EecCCCchhHHHHHHH
Confidence 9999988777665543
No 271
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.53 E-value=0.76 Score=51.79 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=14.7
Q ss_pred CCEEEEecCCCchHHHHH
Q 004098 189 HDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~ 206 (774)
..+++.+|+|+|||....
T Consensus 131 n~l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CeEEEEcCCCCcHHHHHH
Confidence 358999999999996543
No 272
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.52 E-value=0.79 Score=47.84 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHH----cCC-CEEEEecCCCchHHHHHHh
Q 004098 174 LKNFQKEALSAWL----AHH-DCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 174 ~r~~Q~~ai~~il----~g~-d~lv~apTGsGKTl~~~lp 208 (774)
+++.+.+++..+. .+. .+++.+|+|+|||......
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNL 63 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 3444455555432 233 5889999999999765533
No 273
>PF13173 AAA_14: AAA domain
Probab=93.52 E-value=0.26 Score=45.26 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=14.3
Q ss_pred CCCEEEEecCCCchHHH
Q 004098 188 HHDCLVLAATGSGKSLC 204 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~ 204 (774)
++-+++.+|.|+|||..
T Consensus 2 ~~~~~l~G~R~vGKTtl 18 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTL 18 (128)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45688999999999954
No 274
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.51 E-value=0.22 Score=54.67 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=15.0
Q ss_pred CCEEEEecCCCchHHHH
Q 004098 189 HDCLVLAATGSGKSLCF 205 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~ 205 (774)
.++++.+|+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999764
No 275
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=93.45 E-value=0.16 Score=52.64 Aligned_cols=34 Identities=18% Similarity=0.111 Sum_probs=24.6
Q ss_pred HHHHHHHHHHc---C---CCEEEEecCCCchHHHHHHhhh
Q 004098 177 FQKEALSAWLA---H---HDCLVLAATGSGKSLCFQIPAL 210 (774)
Q Consensus 177 ~Q~~ai~~il~---g---~d~lv~apTGsGKTl~~~lpal 210 (774)
+|..++..+.+ + -+.+..+|.|+|||-++.+.+-
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar 79 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFAR 79 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHH
Confidence 46666655542 3 4689999999999988776553
No 276
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.42 E-value=0.7 Score=49.81 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHcCC----CEEEEecCCCchHHHHH
Q 004098 173 SLKNFQKEALSAWLAHH----DCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~----d~lv~apTGsGKTl~~~ 206 (774)
.++|+|...+..+++.. -.|+.+|.|.|||..+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~ 40 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE 40 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH
Confidence 35788999998888532 47889999999996543
No 277
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.39 E-value=0.7 Score=52.19 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=13.1
Q ss_pred cCccEEEEecccccc
Q 004098 285 RGIALFAIDEVHCVS 299 (774)
Q Consensus 285 ~~i~~iVIDEaH~l~ 299 (774)
...+++||||+|.+.
T Consensus 205 ~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 205 CQNDVLIIDDVQFLS 219 (450)
T ss_pred ccCCEEEEecccccc
Confidence 468999999999885
No 278
>PLN03025 replication factor C subunit; Provisional
Probab=93.35 E-value=0.79 Score=49.38 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=15.4
Q ss_pred CCEEEEecCCCchHHHHHH
Q 004098 189 HDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~l 207 (774)
.++++.+|+|+|||.....
T Consensus 35 ~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILA 53 (319)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999965443
No 279
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.34 E-value=0.43 Score=57.17 Aligned_cols=19 Identities=26% Similarity=0.301 Sum_probs=15.4
Q ss_pred EEEEecCCCchHHHHHHhh
Q 004098 191 CLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpa 209 (774)
.|+.+|.|+|||.++.+.+
T Consensus 41 yLFtGPpGtGKTTLARiLA 59 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFA 59 (944)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999998765544
No 280
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=93.29 E-value=0.19 Score=35.11 Aligned_cols=36 Identities=28% Similarity=0.619 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHHH
Q 004098 9 DEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYIL 44 (774)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (774)
+..++.|++|||+.+++.+|+...+-....|+++++
T Consensus 2 ~~~v~~L~~mGf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 2 EEKLEQLLEMGFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 568899999999999999999999988888988876
No 281
>PRK04195 replication factor C large subunit; Provisional
Probab=93.23 E-value=0.49 Score=54.12 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=16.8
Q ss_pred CCCEEEEecCCCchHHHHHHh
Q 004098 188 HHDCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lp 208 (774)
.+.+|+.+|+|+|||......
T Consensus 39 ~~~lLL~GppG~GKTtla~al 59 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHAL 59 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 467999999999999765443
No 282
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.23 E-value=1.7 Score=45.17 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=51.5
Q ss_pred cCCCEEEEecCCCchHHH-HHHhh--hccCCeEEEEcc---chHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCC
Q 004098 187 AHHDCLVLAATGSGKSLC-FQIPA--LLTGKVVVVISP---LISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGM 260 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~-~~lpa--l~~~~~~LVvsP---t~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~ 260 (774)
.|.=++|.+|+|+|||.. .++.. +..+.++++++- ...+.++.......+|+.. . . ...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d~---------~----~-~~~- 99 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVDF---------D----K-IEE- 99 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCCH---------H----H-HhC-
Confidence 356789999999999963 33322 345678888873 2333334444444444421 0 0 111
Q ss_pred ceEEEEChH-------HHHHHHHHHHHHHHhcCccEEEEecccc
Q 004098 261 YSIIYVCPE-------TVIRLIKPLQRLAESRGIALFAIDEVHC 297 (774)
Q Consensus 261 ~~Ilv~TPe-------~l~~ll~~~~~~~~~~~i~~iVIDEaH~ 297 (774)
++++..+. .+..++..+.........++||||=.-.
T Consensus 100 -~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~ 142 (259)
T TIGR03878 100 -NIILIDAASSTELRENVPNLLATLAYAIKEYKVKNTVIDSITG 142 (259)
T ss_pred -CEEEEECCCchhhhhhHHHHHHHHHHHHHhhCCCEEEEcCchH
Confidence 24443322 1223333334444556799999997643
No 283
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.22 E-value=0.54 Score=60.07 Aligned_cols=63 Identities=24% Similarity=0.265 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEecCCCchHHHH--HHhhh---c--cCCeEEEEccchHHHHHHHHHHHhcCCc
Q 004098 173 SLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCF--QIPAL---L--TGKVVVVISPLISLMHDQCSKLSKHGVT 239 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g--~d~lv~apTGsGKTl~~--~lpal---~--~~~~~LVvsPt~~L~~qq~~~l~~~gi~ 239 (774)
.+++.|++|+..++.. +-++|.+..|+|||... ++-++ . .+..++.++||-.-+ ..|.+.|+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa----~~L~e~Gi~ 906 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAV----GEMRSAGVD 906 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHH----HHHHHhCch
Confidence 6899999999999965 66889999999999763 22222 1 245788899985444 444444544
No 284
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.13 E-value=1.3 Score=48.24 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=13.8
Q ss_pred hcCccEEEEecccccc
Q 004098 284 SRGIALFAIDEVHCVS 299 (774)
Q Consensus 284 ~~~i~~iVIDEaH~l~ 299 (774)
.....++||||||.|.
T Consensus 139 ~g~~rVviIDeAd~l~ 154 (351)
T PRK09112 139 DGNWRIVIIDPADDMN 154 (351)
T ss_pred cCCceEEEEEchhhcC
Confidence 3578999999999995
No 285
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.13 E-value=0.94 Score=51.35 Aligned_cols=21 Identities=33% Similarity=0.657 Sum_probs=17.1
Q ss_pred CCEEEEecCCCchHHHHHHhh
Q 004098 189 HDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa 209 (774)
+..|+.+|.|+|||.++.+.+
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 358999999999998766555
No 286
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=1.7 Score=47.67 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=14.8
Q ss_pred CCEEEEecCCCchHHHH
Q 004098 189 HDCLVLAATGSGKSLCF 205 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~ 205 (774)
.|+++.+|||+|||.+.
T Consensus 43 ~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 43 SNIIIYGPTGTGKTATV 59 (366)
T ss_pred ccEEEECCCCCCHhHHH
Confidence 37999999999999764
No 287
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.04 E-value=1.3 Score=52.22 Aligned_cols=163 Identities=16% Similarity=0.158 Sum_probs=92.1
Q ss_pred CCCHHHHHHHHHHHcCC--CEEEEecCCCchHHHHHHhh---hccC--CeEEEEccchHHHHHHHHHH----HhcCCcEE
Q 004098 173 SLKNFQKEALSAWLAHH--DCLVLAATGSGKSLCFQIPA---LLTG--KVVVVISPLISLMHDQCSKL----SKHGVTAC 241 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~--d~lv~apTGsGKTl~~~lpa---l~~~--~~~LVvsPt~~L~~qq~~~l----~~~gi~~~ 241 (774)
....-|.+.+..++..+ -+++.|.-|=|||.+.-+.+ .... ..++|.+|+.+=++..+..+ ..+|.+--
T Consensus 214 ~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~ 293 (758)
T COG1444 214 EDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRK 293 (758)
T ss_pred hhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccc
Confidence 34344444555566543 57778999999998755332 2233 59999999987665555443 33454321
Q ss_pred EEcCC-CChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhc
Q 004098 242 FLGSG-QPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFG 320 (774)
Q Consensus 242 ~l~~~-~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~ 320 (774)
..... ... .....+...|=|..|.... . .-+++|||||=-|. -|.+.++. .
T Consensus 294 v~~d~~g~~----~~~~~~~~~i~y~~P~~a~-~-----------~~DllvVDEAAaIp------lplL~~l~---~--- 345 (758)
T COG1444 294 VAPDALGEI----REVSGDGFRIEYVPPDDAQ-E-----------EADLLVVDEAAAIP------LPLLHKLL---R--- 345 (758)
T ss_pred cccccccce----eeecCCceeEEeeCcchhc-c-----------cCCEEEEehhhcCC------hHHHHHHH---h---
Confidence 11111 100 0111234568899998543 1 15899999999883 45555552 1
Q ss_pred ccccccccCCCCEEEEeccCCH------HHHHHHHHHcCCCCCceEEEccCCCCCcEEE
Q 004098 321 ANNLKSLKFDIPLMALTATATI------QVREDILKSLHMSKGTKFVLTSFFRPNLRFS 373 (774)
Q Consensus 321 ~~~~~~l~~~~~il~lTAT~~~------~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~ 373 (774)
..+.++||.|..- ...-.+++.|.-... ..+..-....+|+|.
T Consensus 346 ---------~~~rv~~sTTIhGYEGtGRgF~lkf~~~l~~~~~-~~~~~~~l~ePIRya 394 (758)
T COG1444 346 ---------RFPRVLFSTTIHGYEGTGRGFSLKFLARLRKQRD-TTLHELELEEPIRYA 394 (758)
T ss_pred ---------hcCceEEEeeecccccCChHHHHHHHHHhccccc-ceEEEEeccCCcccC
Confidence 4478999999743 334445555643321 223333345555554
No 288
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.02 E-value=5.8 Score=42.59 Aligned_cols=137 Identities=18% Similarity=0.213 Sum_probs=67.9
Q ss_pred CCCEEEEecCCCchHHHHH-Hhhh--ccCCeEEEEc-cc-hHHHHHHHHHH-HhcCCcEEEEcCCCChHHHHHHHHcCCc
Q 004098 188 HHDCLVLAATGSGKSLCFQ-IPAL--LTGKVVVVIS-PL-ISLMHDQCSKL-SKHGVTACFLGSGQPDNKVEQKALRGMY 261 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~-lpal--~~~~~~LVvs-Pt-~~L~~qq~~~l-~~~gi~~~~l~~~~~~~~~~~~~~~~~~ 261 (774)
++-+++++|+|+|||.... +... ..+++++++. .+ +.-+.+|...+ ...++.......+..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~d------------- 180 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGAD------------- 180 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCC-------------
Confidence 4457788999999996543 3222 2345566553 33 44444444333 334554433322211
Q ss_pred eEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCC
Q 004098 262 SIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341 (774)
Q Consensus 262 ~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~ 341 (774)
|.... ...+. .....+.++|+||=+-++..-. ....++.++..+..... ...+...++.++||..
T Consensus 181 ------pa~~v--~~~l~-~~~~~~~D~ViIDTaGr~~~~~-~l~~eL~~~~~v~~~~~-----~~~p~~~~LVl~a~~g 245 (318)
T PRK10416 181 ------PASVA--FDAIQ-AAKARGIDVLIIDTAGRLHNKT-NLMEELKKIKRVIKKAD-----PDAPHEVLLVLDATTG 245 (318)
T ss_pred ------HHHHH--HHHHH-HHHhCCCCEEEEeCCCCCcCCH-HHHHHHHHHHHHHhhhc-----CCCCceEEEEEECCCC
Confidence 11100 01111 1123668999999888764211 12234444433322210 1122445889999987
Q ss_pred HHHHHHHHHHc
Q 004098 342 IQVREDILKSL 352 (774)
Q Consensus 342 ~~~~~~i~~~L 352 (774)
.+....+....
T Consensus 246 ~~~~~~a~~f~ 256 (318)
T PRK10416 246 QNALSQAKAFH 256 (318)
T ss_pred hHHHHHHHHHH
Confidence 76666665544
No 289
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.95 E-value=0.53 Score=52.71 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=16.3
Q ss_pred CEEEEecCCCchHHHHHHhh
Q 004098 190 DCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa 209 (774)
.+++.+|+|+|||..+...+
T Consensus 38 ~ilL~GppGtGKTtLA~~ia 57 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIA 57 (413)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68999999999998765443
No 290
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.94 E-value=0.23 Score=57.51 Aligned_cols=157 Identities=17% Similarity=0.142 Sum_probs=90.7
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEecCCCchHHHHHHhhh----ccCCeEEEEccchHHHHHHHH-HHHhc-----CCcE
Q 004098 173 SLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQIPAL----LTGKVVVVISPLISLMHDQCS-KLSKH-----GVTA 240 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g--~d~lv~apTGsGKTl~~~lpal----~~~~~~LVvsPt~~L~~qq~~-~l~~~-----gi~~ 240 (774)
..+|||.+.+.++-.. +.+.+..++-+|||.+.+..+. .....+|++.||..++.+... ++... .++
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~- 94 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRASPVLR- 94 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHHHH-
Confidence 5789999999988753 5788888999999996554432 347799999999999988874 34332 011
Q ss_pred EEEcC---CCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc----CCCCcHHHHHHHH
Q 004098 241 CFLGS---GQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK----WGHDFRPDYRRLS 313 (774)
Q Consensus 241 ~~l~~---~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~----~g~~fr~~~~~l~ 313 (774)
..+.. .........+...++ .|.++....- ..+....++++++||++.... .|..+.-.-.+.
T Consensus 95 ~~~~~~~~~~~~~t~~~k~f~gg-~l~~~ga~S~--------~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~- 164 (557)
T PF05876_consen 95 RKLSPSKSRDSGNTILYKRFPGG-FLYLVGANSP--------SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRT- 164 (557)
T ss_pred HHhCchhhcccCCchhheecCCC-EEEEEeCCCC--------cccccCCcCEEEEechhhccccCccCCCHHHHHHHHH-
Confidence 11111 111111222223343 3333332211 122335689999999999843 332222221222
Q ss_pred HHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHc
Q 004098 314 VLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSL 352 (774)
Q Consensus 314 ~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L 352 (774)
..|. ....+++..||+.+....|....
T Consensus 165 ---~tf~---------~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 165 ---KTFG---------SNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred ---hhhc---------cCcEEEEeCCCCCCCCCHHHHHH
Confidence 2332 45677888899876544555444
No 291
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=92.93 E-value=0.15 Score=49.45 Aligned_cols=115 Identities=18% Similarity=0.244 Sum_probs=53.6
Q ss_pred EEEecCCCchHHHHHHhhh--ccC--CeEEEEccchHHHHHHHHHHHh----cCCcEEEEcCCCChHH-HHHHHHcCCce
Q 004098 192 LVLAATGSGKSLCFQIPAL--LTG--KVVVVISPLISLMHDQCSKLSK----HGVTACFLGSGQPDNK-VEQKALRGMYS 262 (774)
Q Consensus 192 lv~apTGsGKTl~~~lpal--~~~--~~~LVvsPt~~L~~qq~~~l~~----~gi~~~~l~~~~~~~~-~~~~~~~~~~~ 262 (774)
++.|+-|-|||.+-.+.+- ... ..++|.+|..+=++..++.+.. .+++. ...... ...........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKE-----EKKKRIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC-------------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcccccccc-----ccccccccccccccccce
Confidence 5789999999987655442 222 3799999998766655544432 22222 000000 00111223568
Q ss_pred EEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCC
Q 004098 263 IIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341 (774)
Q Consensus 263 Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~ 341 (774)
|-|..|+.+.... ...+++|||||=.+. -|.+.++ .. ..+.++||.|..
T Consensus 76 i~f~~Pd~l~~~~---------~~~DlliVDEAAaIp------~p~L~~l------l~---------~~~~vv~stTi~ 124 (177)
T PF05127_consen 76 IEFVAPDELLAEK---------PQADLLIVDEAAAIP------LPLLKQL------LR---------RFPRVVFSTTIH 124 (177)
T ss_dssp --B--HHHHCCT-------------SCEEECTGGGS-------HHHHHHH------HC---------CSSEEEEEEEBS
T ss_pred EEEECCHHHHhCc---------CCCCEEEEechhcCC------HHHHHHH------Hh---------hCCEEEEEeecc
Confidence 8999999664321 135899999999883 4444444 11 567788888863
No 292
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=92.91 E-value=0.23 Score=58.83 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=64.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEeccc-ccCcccCCcceEE
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF-GMGIDKLNVRRII 585 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~-~~GIDip~V~~VI 585 (774)
.+.+++|-++|+.-+.++++.+.+ .|+++..+||+++..+|..+++...+|+.+|+|+|... ...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 456899999999999998887765 37999999999999999999999999999999999764 3457778888887
No 293
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.84 E-value=4.5 Score=45.32 Aligned_cols=124 Identities=16% Similarity=0.117 Sum_probs=60.6
Q ss_pred CCEEEEecCCCchHHHHHHhh--hc-cCCeEEEEcc--chHHHHHHHHHHH-hcCCcEEEEcCCCChHHHHHHHHcCCce
Q 004098 189 HDCLVLAATGSGKSLCFQIPA--LL-TGKVVVVISP--LISLMHDQCSKLS-KHGVTACFLGSGQPDNKVEQKALRGMYS 262 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa--l~-~~~~~LVvsP--t~~L~~qq~~~l~-~~gi~~~~l~~~~~~~~~~~~~~~~~~~ 262 (774)
..+++++++|+|||.+..-.+ +. .+.++++|+. .+.-+.+|...+. ..+++........
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~--------------- 160 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNK--------------- 160 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCcc---------------
Confidence 357889999999997643222 22 2344444432 2343444444443 3454432111000
Q ss_pred EEEEChHH-HHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCC
Q 004098 263 IIYVCPET-VIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341 (774)
Q Consensus 263 Ilv~TPe~-l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~ 341 (774)
.|.. +.+.+. .....++||||.|-+... -...+..+..+..... ++.-++.+.||..
T Consensus 161 ----d~~~i~~~al~------~~~~~DvVIIDTAGr~~~----d~~lm~El~~l~~~~~--------pdevlLVvda~~g 218 (437)
T PRK00771 161 ----DAVEIAKEGLE------KFKKADVIIVDTAGRHAL----EEDLIEEMKEIKEAVK--------PDEVLLVIDATIG 218 (437)
T ss_pred ----CHHHHHHHHHH------HhhcCCEEEEECCCcccc----hHHHHHHHHHHHHHhc--------ccceeEEEecccc
Confidence 0111 111122 112248999999966532 1233344444433322 2556778888887
Q ss_pred HHHHHHHH
Q 004098 342 IQVREDIL 349 (774)
Q Consensus 342 ~~~~~~i~ 349 (774)
.+..+.+.
T Consensus 219 q~av~~a~ 226 (437)
T PRK00771 219 QQAKNQAK 226 (437)
T ss_pred HHHHHHHH
Confidence 66555443
No 294
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=92.83 E-value=0.12 Score=60.74 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=49.1
Q ss_pred CCCEEEEecCCCchHHHHHHhhhcc-CCeEEEEccchHHHHHHHHHHHhcCCcEEEEcC
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALLT-GKVVVVISPLISLMHDQCSKLSKHGVTACFLGS 245 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~~-~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~ 245 (774)
.++++++||||||||..|++|.++. .+.+||+=|.-++........++.|..+..+.-
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~~FnP 197 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRARKASGDAVFKFAP 197 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEecC
Confidence 3589999999999999999998765 678999999999998887777778877766654
No 295
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.81 E-value=1.2 Score=50.17 Aligned_cols=87 Identities=17% Similarity=0.204 Sum_probs=52.0
Q ss_pred CCCEEEEecCCCchHHH-HHHhhh--ccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEE
Q 004098 188 HHDCLVLAATGSGKSLC-FQIPAL--LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~-~~lpal--~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Il 264 (774)
|.-+++.+++|+|||.. .++... ..+.++++++-- +-..|......++|+..- ++.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E-es~~qi~~ra~rlg~~~~--------------------~l~ 138 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE-ESASQIKLRAERLGLPSD--------------------NLY 138 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-ccHHHHHHHHHHcCCChh--------------------cEE
Confidence 56788899999999964 333222 246788888753 444566666666654210 133
Q ss_pred EEChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 265 v~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
+.....+..++. .+...+.++||||+.+.+.
T Consensus 139 ~~~e~~l~~i~~----~i~~~~~~lVVIDSIq~l~ 169 (446)
T PRK11823 139 LLAETNLEAILA----TIEEEKPDLVVIDSIQTMY 169 (446)
T ss_pred EeCCCCHHHHHH----HHHhhCCCEEEEechhhhc
Confidence 333333333332 2233568999999999875
No 296
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=92.68 E-value=0.95 Score=54.75 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=15.9
Q ss_pred EEEEecCCCchHHHHHHhh
Q 004098 191 CLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpa 209 (774)
+|+.+|.|+|||.++.+.+
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lA 58 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILA 58 (824)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998766554
No 297
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.66 E-value=1.2 Score=47.65 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHHHHHc----CC---CEEEEecCCCchHHHHH
Q 004098 171 HSSLKNFQKEALSAWLA----HH---DCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 171 ~~~~r~~Q~~ai~~il~----g~---d~lv~apTGsGKTl~~~ 206 (774)
++.++|+|..++..+.+ ++ -.++.+|.|.||+..+.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~ 44 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL 44 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 35688999988887663 33 47889999999996543
No 298
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.63 E-value=4.6 Score=44.69 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=38.0
Q ss_pred hcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCC
Q 004098 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHM 354 (774)
Q Consensus 284 ~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~ 354 (774)
..+.++|+||=+-+... =...+..+..+...+... .+...+|.|+||.......++......
T Consensus 297 ~~~~D~VLIDTaGr~~r----d~~~l~eL~~~~~~~~~~-----~~~e~~LVLsAt~~~~~~~~~~~~f~~ 358 (432)
T PRK12724 297 RDGSELILIDTAGYSHR----NLEQLERMQSFYSCFGEK-----DSVENLLVLSSTSSYHHTLTVLKAYES 358 (432)
T ss_pred hCCCCEEEEeCCCCCcc----CHHHHHHHHHHHHhhcCC-----CCCeEEEEEeCCCCHHHHHHHHHHhcC
Confidence 35689999997655421 134555555544433110 013457899999999887877776643
No 299
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.63 E-value=0.82 Score=53.05 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=15.6
Q ss_pred CEEEEecCCCchHHHHHHhh
Q 004098 190 DCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa 209 (774)
-.|+.+|.|.|||.+..+.+
T Consensus 40 A~LFtGP~GvGKTTLAriLA 59 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILA 59 (700)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35889999999997765444
No 300
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.59 E-value=6.8 Score=41.05 Aligned_cols=135 Identities=21% Similarity=0.204 Sum_probs=64.9
Q ss_pred CCEEEEecCCCchHHHHHHhh--h-ccCCeEEEEc--cchHHHHHHHHHH-HhcCCcEEEEcCCCChHHHHHHHHcCCce
Q 004098 189 HDCLVLAATGSGKSLCFQIPA--L-LTGKVVVVIS--PLISLMHDQCSKL-SKHGVTACFLGSGQPDNKVEQKALRGMYS 262 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa--l-~~~~~~LVvs--Pt~~L~~qq~~~l-~~~gi~~~~l~~~~~~~~~~~~~~~~~~~ 262 (774)
+-+++++|+|+|||.+..-.+ + ..+.+++++. +.+.-..+|...+ ...++.......+..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~d-------------- 138 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGAD-------------- 138 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCC--------------
Confidence 446678999999997543222 1 2345666654 3444445555444 345654432222211
Q ss_pred EEEEChHHH-HHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCC
Q 004098 263 IIYVCPETV-IRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341 (774)
Q Consensus 263 Ilv~TPe~l-~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~ 341 (774)
|..+ ...+. .....+.++|+||=+-+... . ...+..|..+.+.... +....++-.++.++||..
T Consensus 139 -----p~~~~~~~l~----~~~~~~~D~ViIDT~G~~~~-d---~~~~~el~~~~~~~~~--~~~~~~~~~~LVl~a~~~ 203 (272)
T TIGR00064 139 -----PAAVAFDAIQ----KAKARNIDVVLIDTAGRLQN-K---VNLMDELKKIKRVIKK--VDKDAPDEVLLVLDATTG 203 (272)
T ss_pred -----HHHHHHHHHH----HHHHCCCCEEEEeCCCCCcc-h---HHHHHHHHHHHHHHhc--ccCCCCceEEEEEECCCC
Confidence 1111 11111 11235678888888776532 1 1222233333222110 000112445788899877
Q ss_pred HHHHHHHHHHc
Q 004098 342 IQVREDILKSL 352 (774)
Q Consensus 342 ~~~~~~i~~~L 352 (774)
.+....+....
T Consensus 204 ~~~~~~~~~f~ 214 (272)
T TIGR00064 204 QNALEQAKVFN 214 (272)
T ss_pred HHHHHHHHHHH
Confidence 66665554443
No 301
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.58 E-value=1.2 Score=48.81 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=50.0
Q ss_pred CCCEEEEecCCCchHHHHH-Hhhh--ccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEE
Q 004098 188 HHDCLVLAATGSGKSLCFQ-IPAL--LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~-lpal--~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Il 264 (774)
|.=+++.+++|+|||...+ +... ..+.++++++--. -..|......++++..- ++.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE-s~~qi~~Ra~rlg~~~~--------------------~l~ 140 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE-SPEQIKLRADRLGISTE--------------------NLY 140 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc-CHHHHHHHHHHcCCCcc--------------------cEE
Confidence 5668889999999997433 3221 2356888887543 34555555555554210 222
Q ss_pred EEChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 265 v~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
+.....+..++. .+...+.++||||+.+.+.
T Consensus 141 l~~e~~le~I~~----~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 141 LLAETNLEDILA----SIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred EEccCcHHHHHH----HHHhcCCcEEEEcchHHhh
Confidence 222222222222 2234578999999999874
No 302
>PRK14873 primosome assembly protein PriA; Provisional
Probab=92.56 E-value=0.38 Score=56.78 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=71.9
Q ss_pred cCchhHhhhhccCCCC-CCcEEEEeCchHHHHHHHHHHHhC-C-CceEEecCCCCHHHHHHHHHHHhcCCceEEEEeccc
Q 004098 496 LNKPAERLSMLQEPLE-DGLTIIYVPTRKETLSIAKYLCGF-G-VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572 (774)
Q Consensus 496 ~~k~~~ll~~L~~~~~-~~~~IIF~~sr~~~~~l~~~L~~~-g-~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~ 572 (774)
+.|.+..+.++.+.+. +..+||-++....+..+.+.|+.. | ..+..||+++++.+|.+...+..+|+.+|+|.|..+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 4677777777766655 448999999999999999999875 4 679999999999999999999999999999999642
Q ss_pred ccCcccCCcceEEE
Q 004098 573 GMGIDKLNVRRIIH 586 (774)
Q Consensus 573 ~~GIDip~V~~VI~ 586 (774)
- =.-+++..+||.
T Consensus 251 v-FaP~~~LgLIIv 263 (665)
T PRK14873 251 V-FAPVEDLGLVAI 263 (665)
T ss_pred E-EeccCCCCEEEE
Confidence 2 234445555553
No 303
>PRK04328 hypothetical protein; Provisional
Probab=92.56 E-value=0.65 Score=48.06 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=59.3
Q ss_pred CCCEEEEecCCCchHH-HHHHh--hhccCCeEEEEccchHHHHHHHHHHHhcCCc---------EEEEcCCCChHHHHHH
Q 004098 188 HHDCLVLAATGSGKSL-CFQIP--ALLTGKVVVVISPLISLMHDQCSKLSKHGVT---------ACFLGSGQPDNKVEQK 255 (774)
Q Consensus 188 g~d~lv~apTGsGKTl-~~~lp--al~~~~~~LVvsPt~~L~~qq~~~l~~~gi~---------~~~l~~~~~~~~~~~~ 255 (774)
|.-++|.+|+|+|||. +.++. .+..+..+++++ +-+-..+..+.+..+|.. ...+..-.... ..
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~d~~~~~~~~~l~iid~~~~~~--~~- 98 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGWDVRKYEEEGKFAIVDAFTGGI--GS- 98 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCCCHHHHhhcCCEEEEecccccc--cc-
Confidence 5678899999999985 44432 345667777776 444555666666666542 11111100000 00
Q ss_pred HHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 004098 256 ALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (774)
Q Consensus 256 ~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l 298 (774)
.......++.+|+.+..++..+...+...+.+++|||=.--+
T Consensus 99 -~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l 140 (249)
T PRK04328 99 -AAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTL 140 (249)
T ss_pred -ccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHh
Confidence 001112344456555555555555555567899999987644
No 304
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.54 E-value=2.5 Score=43.17 Aligned_cols=99 Identities=20% Similarity=0.223 Sum_probs=56.0
Q ss_pred CCCEEEEecCCCchHHHH-HHh--hhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEE
Q 004098 188 HHDCLVLAATGSGKSLCF-QIP--ALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~-~lp--al~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Il 264 (774)
|.-+++.+++|+|||... ++. .+..+.++++++=- +-..+..+.+..+|+...-. ...+...++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e-~~~~~~~~~~~~~g~~~~~~------------~~~g~l~i~ 91 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE-NTSKSYLKQMESVKIDISDF------------FLWGYLRIF 91 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC-CCHHHHHHHHHHCCCChhHH------------HhCCCceEE
Confidence 567888999999999643 332 23456777777653 33466777777777542111 111212222
Q ss_pred EE-------ChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 265 YV-------CPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 265 v~-------TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
-. ++..+..++..+...+...+.+++||||.--+.
T Consensus 92 ~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 92 PLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred eccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 11 122222333434444444578999999998654
No 305
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.48 E-value=1.1 Score=52.54 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=16.2
Q ss_pred CEEEEecCCCchHHHHHHhh
Q 004098 190 DCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa 209 (774)
.+|+.+|.|+|||.++.+.+
T Consensus 40 a~Lf~GP~GvGKTTlAriLA 59 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILA 59 (709)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47999999999998765544
No 306
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.34 E-value=0.66 Score=49.78 Aligned_cols=53 Identities=30% Similarity=0.384 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHH-cCCCEEEEecCCCchHHHHH--Hhhh---ccCCeEEEEccchHH
Q 004098 173 SLKNFQKEALSAWL-AHHDCLVLAATGSGKSLCFQ--IPAL---LTGKVVVVISPLISL 225 (774)
Q Consensus 173 ~~r~~Q~~ai~~il-~g~d~lv~apTGsGKTl~~~--lpal---~~~~~~LVvsPt~~L 225 (774)
.+.+.|.+.+..++ .+++++++++||+|||.... +-.+ ....++++|-.+.+|
T Consensus 132 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 132 IMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 36788888887655 47799999999999995432 2111 234577777777766
No 307
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.28 E-value=1.1 Score=49.28 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=15.2
Q ss_pred EEEEecCCCchHHHHHHhh
Q 004098 191 CLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpa 209 (774)
+++.+|.|+|||..+...+
T Consensus 41 ~L~~Gp~G~GKTtla~~la 59 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLA 59 (363)
T ss_pred EEEecCCCCCHHHHHHHHH
Confidence 5899999999998765443
No 308
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=92.23 E-value=0.82 Score=56.54 Aligned_cols=65 Identities=23% Similarity=0.192 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHc-CCCEEEEecCCCchHHHHHH--hhh-ccCCeEEEEccchHHHHHHHHHHHh-cCCcEE
Q 004098 173 SLKNFQKEALSAWLA-HHDCLVLAATGSGKSLCFQI--PAL-LTGKVVVVISPLISLMHDQCSKLSK-HGVTAC 241 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~-g~d~lv~apTGsGKTl~~~l--pal-~~~~~~LVvsPt~~L~~qq~~~l~~-~gi~~~ 241 (774)
.|++-|.+|+..+.. ++=++|.++-|+|||.+.-. -++ ..+..++.++||---+ ..|.+ .|+.+.
T Consensus 381 ~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA----~~L~e~~Gi~a~ 450 (1102)
T PRK13826 381 RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAA----EGLEKEAGIQSR 450 (1102)
T ss_pred CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHH----HHHHHhhCCCee
Confidence 689999999998864 45588899999999975332 222 2477889999984443 44433 355543
No 309
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.16 E-value=2.3 Score=47.05 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=14.5
Q ss_pred CEEEEecCCCchHHHHHH
Q 004098 190 DCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~l 207 (774)
-+|+.+|.|.|||..+..
T Consensus 38 a~Lf~Gp~G~GKt~lA~~ 55 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARA 55 (394)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 478999999999976543
No 310
>PRK10867 signal recognition particle protein; Provisional
Probab=92.15 E-value=1.3 Score=49.44 Aligned_cols=104 Identities=20% Similarity=0.269 Sum_probs=55.3
Q ss_pred CEEEEecCCCchHHHHHHhhh---cc-CCeEEEEc--cchHHHHHHHHHH-HhcCCcEEEEcCCCChHHHHH----HHHc
Q 004098 190 DCLVLAATGSGKSLCFQIPAL---LT-GKVVVVIS--PLISLMHDQCSKL-SKHGVTACFLGSGQPDNKVEQ----KALR 258 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpal---~~-~~~~LVvs--Pt~~L~~qq~~~l-~~~gi~~~~l~~~~~~~~~~~----~~~~ 258 (774)
-+++++++|+|||.+..-.|. .. +.++++|+ +.|+-+.+|...+ ...++++.....+........ ....
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~ 181 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKE 181 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHh
Confidence 367789999999975443222 23 44555543 3455555555444 456777655433333322222 2233
Q ss_pred CCce-EEEEChHHHH---HHHHHHHHH---HHhcCccEEEEec
Q 004098 259 GMYS-IIYVCPETVI---RLIKPLQRL---AESRGIALFAIDE 294 (774)
Q Consensus 259 ~~~~-Ilv~TPe~l~---~ll~~~~~~---~~~~~i~~iVIDE 294 (774)
..++ |+|=||+++. .++..+... .....+ ++|+|-
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~ev-llVlda 223 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEI-LLVVDA 223 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeE-EEEEec
Confidence 4454 7888998763 233333332 223333 788884
No 311
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.11 E-value=0.7 Score=49.43 Aligned_cols=89 Identities=19% Similarity=0.160 Sum_probs=56.1
Q ss_pred CCCEEEEecCCCchHHHHHHhh---hccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEE
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Il 264 (774)
|+=+.+.+|+|+|||...+-.+ ...++.+++|.+--++-.+ .+..+|+.. -+++
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~---~a~~lGvd~--------------------~~l~ 111 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV---YAKKLGVDL--------------------DNLL 111 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH---HHHHcCCCH--------------------HHhe
Confidence 5678899999999996543222 2357888999876665543 344444320 1355
Q ss_pred EEChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 265 v~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
+..|.....++..+..++....+++||||=+-.+.
T Consensus 112 v~~p~~~eq~l~i~~~li~s~~~~lIVIDSvaal~ 146 (325)
T cd00983 112 ISQPDTGEQALEIADSLVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred ecCCCCHHHHHHHHHHHHhccCCCEEEEcchHhhc
Confidence 66555444444444445556789999999876653
No 312
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=92.04 E-value=0.43 Score=53.03 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHh
Q 004098 174 LKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 174 ~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lp 208 (774)
+.......+..+..++++++.+|+|+|||..+...
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~l 214 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVARRL 214 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHH
Confidence 34455666777778999999999999999766533
No 313
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.97 E-value=1.1 Score=51.30 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=16.7
Q ss_pred CEEEEecCCCchHHHHHHhh
Q 004098 190 DCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa 209 (774)
..|+.+|.|+|||.++.+.+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68999999999998766554
No 314
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=91.93 E-value=0.57 Score=62.04 Aligned_cols=64 Identities=22% Similarity=0.279 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHcCC--CEEEEecCCCchHHHH------HHhhhc-cCCeEEEEccchHHHHHHHHHHHhcCCc
Q 004098 172 SSLKNFQKEALSAWLAHH--DCLVLAATGSGKSLCF------QIPALL-TGKVVVVISPLISLMHDQCSKLSKHGVT 239 (774)
Q Consensus 172 ~~~r~~Q~~ai~~il~g~--d~lv~apTGsGKTl~~------~lpal~-~~~~~LVvsPt~~L~~qq~~~l~~~gi~ 239 (774)
..+++.|++|+..++.+. -++|.++.|+|||... +.-+.. .+..++.++||- ..+..|+..|+.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~----~Aa~~L~~~g~~ 1090 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTH----EAVGELKSAGVQ 1090 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChH----HHHHHHHhcCCc
Confidence 368999999999998764 4677899999999765 111222 366788899994 444555555554
No 315
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.93 E-value=1.2 Score=52.09 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.2
Q ss_pred EEEEecCCCchHHHHHHhh
Q 004098 191 CLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpa 209 (774)
.|+.+|.|+|||.++.+.+
T Consensus 41 yLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999998765444
No 316
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.88 E-value=1.4 Score=44.01 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=48.1
Q ss_pred CCCEEEEecCCCchHHHHHHhh---hccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEE
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Il 264 (774)
|+=+.+.+|+|+|||...+-.+ ...+..+++|.-.. +..+...+..... . .. ..+ +++
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~~~~~-----------~----~~-~~~--~i~ 72 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQIAEDR-----------P----ER-ALS--NFI 72 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHHHHhC-----------h----HH-Hhc--CEE
Confidence 5668899999999997543322 23455677766542 2222222221100 0 00 112 344
Q ss_pred EECh---HHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 004098 265 YVCP---ETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (774)
Q Consensus 265 v~TP---e~l~~ll~~~~~~~~~~~i~~iVIDEaH~l 298 (774)
+..+ +.+...+..+...+....+++||||-.-.+
T Consensus 73 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lvVIDSis~l 109 (209)
T TIGR02237 73 VFEVFDFDEQGVAIQKTSKFIDRDSASLVVVDSFTAL 109 (209)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcCccEEEEeCcHHH
Confidence 4433 333333443344444457899999998766
No 317
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.88 E-value=1.3 Score=50.29 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=15.4
Q ss_pred EEEEecCCCchHHHHHHhh
Q 004098 191 CLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpa 209 (774)
+|+.+|+|+|||.++.+.+
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA 57 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILA 57 (472)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999997765443
No 318
>CHL00181 cbbX CbbX; Provisional
Probab=91.80 E-value=2.9 Score=44.22 Aligned_cols=21 Identities=14% Similarity=0.070 Sum_probs=16.7
Q ss_pred CCCEEEEecCCCchHHHHHHh
Q 004098 188 HHDCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lp 208 (774)
+.++++.+|+|+|||.++...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 446899999999999876543
No 319
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.77 E-value=1.6 Score=50.68 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=15.5
Q ss_pred EEEEecCCCchHHHHHHhh
Q 004098 191 CLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpa 209 (774)
.|+.+|.|+|||.++.+.+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILA 56 (584)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999998765544
No 320
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=91.76 E-value=1.6 Score=44.23 Aligned_cols=41 Identities=27% Similarity=0.255 Sum_probs=25.7
Q ss_pred HHHHHHc-----CCCEEEEecCCCchHHHHHHhh---hccCCeEEEEcc
Q 004098 181 ALSAWLA-----HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISP 221 (774)
Q Consensus 181 ai~~il~-----g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsP 221 (774)
.+..++. |.-+++.+|+|+|||...+-.+ +..+..++++.=
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4555553 5678999999999986433222 234556666643
No 321
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=91.75 E-value=0.2 Score=58.74 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=49.6
Q ss_pred CCEEEEecCCCchHHHHHHhhhcc-CCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCC
Q 004098 189 HDCLVLAATGSGKSLCFQIPALLT-GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQ 247 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpal~~-~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~ 247 (774)
.++++.||||+|||..+++|.++. ++.+||+=|.-++..-.....++.|.++..+.-..
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~vfdP~~ 284 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLDPTN 284 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999999876 67888888999998877777777888877776544
No 322
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.68 E-value=0.86 Score=49.91 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.5
Q ss_pred CEEEEecCCCchHHHH
Q 004098 190 DCLVLAATGSGKSLCF 205 (774)
Q Consensus 190 d~lv~apTGsGKTl~~ 205 (774)
-.|+.+|.|.||+..+
T Consensus 43 A~Lf~Gp~G~GK~~lA 58 (365)
T PRK07471 43 AWLIGGPQGIGKATLA 58 (365)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999654
No 323
>PRK09354 recA recombinase A; Provisional
Probab=91.67 E-value=1 Score=48.58 Aligned_cols=89 Identities=19% Similarity=0.168 Sum_probs=57.5
Q ss_pred CCCEEEEecCCCchHHHHHH---hhhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEE
Q 004098 188 HHDCLVLAATGSGKSLCFQI---PALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~l---pal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Il 264 (774)
|+=+.+.+|+|+|||...+- .+...++.+++|..--++-.. .+..+|+.. -+++
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~---~a~~lGvdl--------------------d~ll 116 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YAKKLGVDI--------------------DNLL 116 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHH---HHHHcCCCH--------------------HHeE
Confidence 56788999999999965432 223457888888876665542 344455431 1356
Q ss_pred EEChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 265 v~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
+..|......+..+..++....+++||||=+-.+.
T Consensus 117 i~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 117 VSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALV 151 (349)
T ss_pred EecCCCHHHHHHHHHHHhhcCCCCEEEEeChhhhc
Confidence 66665554444444455556789999999877653
No 324
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.66 E-value=1.9 Score=49.89 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=16.0
Q ss_pred CEEEEecCCCchHHHHHHhh
Q 004098 190 DCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa 209 (774)
-.|+.+|.|+|||..+.+.+
T Consensus 40 A~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47899999999998765543
No 325
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.65 E-value=11 Score=36.31 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=18.9
Q ss_pred EEEEecCCCchHHHHHHhhh---ccCCeEEEEc
Q 004098 191 CLVLAATGSGKSLCFQIPAL---LTGKVVVVIS 220 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpal---~~~~~~LVvs 220 (774)
+++.+|+|+|||......+. ..+.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 57789999999976543332 2344555444
No 326
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=91.63 E-value=2.2 Score=49.78 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=16.6
Q ss_pred CEEEEecCCCchHHHHHHhh
Q 004098 190 DCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa 209 (774)
..|+.+|.|.|||.++.+.+
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lA 67 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILA 67 (598)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999998766554
No 327
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=91.63 E-value=1.6 Score=47.18 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=15.3
Q ss_pred CEEEEecCCCchHHHHHH
Q 004098 190 DCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~l 207 (774)
.+++.+|+|+|||.....
T Consensus 38 ~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 699999999999976543
No 328
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.62 E-value=1.7 Score=49.82 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=15.5
Q ss_pred EEEEecCCCchHHHHHHhh
Q 004098 191 CLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpa 209 (774)
.|+.+|.|+|||.++.+.+
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lA 59 (509)
T PRK14958 41 YLFTGTRGVGKTTISRILA 59 (509)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999998765544
No 329
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.57 E-value=1.3 Score=49.38 Aligned_cols=33 Identities=33% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCEEEEecCCCchHHHHHHhhh-ccCCeEEEEcc
Q 004098 189 HDCLVLAATGSGKSLCFQIPAL-LTGKVVVVISP 221 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpal-~~~~~~LVvsP 221 (774)
..+++.+|.|+|||..+.-.++ ..-+.+=|++|
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSp 572 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISP 572 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeCh
Confidence 3689999999999965443333 34456666676
No 330
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=91.36 E-value=0.28 Score=56.04 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHc---------CCCEEEEecCCCchHHHHHHhhh---c----cCCeEEEEccchHHHHHHHHHHHhc
Q 004098 176 NFQKEALSAWLA---------HHDCLVLAATGSGKSLCFQIPAL---L----TGKVVVVISPLISLMHDQCSKLSKH 236 (774)
Q Consensus 176 ~~Q~~ai~~il~---------g~d~lv~apTGsGKTl~~~lpal---~----~~~~~LVvsPt~~L~~qq~~~l~~~ 236 (774)
|+|+-++..++- -+.+++..|=|.|||......++ . .+..++++++++.-+...++.+.+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 567766666651 24689999999999975433322 1 3568999999999999888887764
No 331
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.34 E-value=1.6 Score=48.00 Aligned_cols=68 Identities=15% Similarity=0.334 Sum_probs=42.3
Q ss_pred CCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEEEECh
Q 004098 189 HDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCP 268 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TP 268 (774)
.-+++.+|+|+|||- |++-+...+.+.+. ...++|+|.
T Consensus 114 nplfi~G~~GlGKTH---------------------Ll~Aign~~~~~~~---------------------~a~v~y~~s 151 (408)
T COG0593 114 NPLFIYGGVGLGKTH---------------------LLQAIGNEALANGP---------------------NARVVYLTS 151 (408)
T ss_pred CcEEEECCCCCCHHH---------------------HHHHHHHHHHhhCC---------------------CceEEeccH
Confidence 458999999999994 44444444443332 235666666
Q ss_pred HHHHH-HH--------HHHHHHHHhcCccEEEEecccccccC
Q 004098 269 ETVIR-LI--------KPLQRLAESRGIALFAIDEVHCVSKW 301 (774)
Q Consensus 269 e~l~~-ll--------~~~~~~~~~~~i~~iVIDEaH~l~~~ 301 (774)
+.+.+ ++ ..+++.+ .+++++||.++.+...
T Consensus 152 e~f~~~~v~a~~~~~~~~Fk~~y---~~dlllIDDiq~l~gk 190 (408)
T COG0593 152 EDFTNDFVKALRDNEMEKFKEKY---SLDLLLIDDIQFLAGK 190 (408)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhh---ccCeeeechHhHhcCC
Confidence 65432 11 1122222 6899999999999754
No 332
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.33 E-value=1.8 Score=44.09 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=33.8
Q ss_pred cCCCEEEEecCCCchHHH-HHHh--hhccCCeEEEEccchHHHHHHHHHHHhcCC
Q 004098 187 AHHDCLVLAATGSGKSLC-FQIP--ALLTGKVVVVISPLISLMHDQCSKLSKHGV 238 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~-~~lp--al~~~~~~LVvsPt~~L~~qq~~~l~~~gi 238 (774)
.|.-+++.+|+|+|||.. .++. .+.++.++++++.. +-..+..+.+.++|.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e-~~~~~~~~~~~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ-LTTTEFIKQMMSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHHHhCC
Confidence 477889999999999976 3332 23456788888843 334555566655554
No 333
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.31 E-value=2.6 Score=44.51 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=15.9
Q ss_pred CCCEEEEecCCCchHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~ 206 (774)
+.++++.+|+|+|||.++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3479999999999998763
No 334
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=91.31 E-value=2.7 Score=43.70 Aligned_cols=139 Identities=22% Similarity=0.268 Sum_probs=68.2
Q ss_pred CCEEEEecCCCchHHHHHHhh---hcc-CCeEEEEccc---hHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHH------
Q 004098 189 HDCLVLAATGSGKSLCFQIPA---LLT-GKVVVVISPL---ISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQK------ 255 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa---l~~-~~~~LVvsPt---~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~------ 255 (774)
.=+++.|+||.|||...+-.+ ... +..+++++.= .+++......+. +++...+..+.........
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s--~v~~~~i~~g~l~~~e~~~~~~~~~ 97 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLS--GVPYNKIRSGDLSDEEFERLQAAAE 97 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHH--TSTHHHHHCCGCHHHHHHHHHHHHH
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhh--cchhhhhhccccCHHHHHHHHHHHH
Confidence 346778899999997543222 233 5788888762 333333333222 3433223333222211111
Q ss_pred HHcCCceEEEEChH-HHHHHHHHHHHHHHh-cCccEEEEecccccccCC--CCcHHHHH----HHHHHHHHhcccccccc
Q 004098 256 ALRGMYSIIYVCPE-TVIRLIKPLQRLAES-RGIALFAIDEVHCVSKWG--HDFRPDYR----RLSVLRENFGANNLKSL 327 (774)
Q Consensus 256 ~~~~~~~Ilv~TPe-~l~~ll~~~~~~~~~-~~i~~iVIDEaH~l~~~g--~~fr~~~~----~l~~l~~~~~~~~~~~l 327 (774)
.+....-++.-+|. .+..+.......... ..+++||||=.|.+.... .+-+..+. .|..+...+
T Consensus 98 ~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~-------- 169 (259)
T PF03796_consen 98 KLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKEL-------- 169 (259)
T ss_dssp HHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHH--------
T ss_pred HHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHc--------
Confidence 12222223334433 222222222223223 789999999999987532 11233333 333333333
Q ss_pred cCCCCEEEEecc
Q 004098 328 KFDIPLMALTAT 339 (774)
Q Consensus 328 ~~~~~il~lTAT 339 (774)
++|++++|-.
T Consensus 170 --~i~vi~~sQl 179 (259)
T PF03796_consen 170 --NIPVIALSQL 179 (259)
T ss_dssp --TSEEEEEEEB
T ss_pred --CCeEEEcccc
Confidence 7888888864
No 335
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=91.30 E-value=0.62 Score=53.62 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=55.6
Q ss_pred EEEEeCchHHHHHHHHHHHh----C-CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec-----ccccC-cccCCcce
Q 004098 515 TIIYVPTRKETLSIAKYLCG----F-GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFGMG-IDKLNVRR 583 (774)
Q Consensus 515 ~IIF~~sr~~~~~l~~~L~~----~-g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~-----a~~~G-IDip~V~~ 583 (774)
+||.++||+-|.++++.+.. . ++.+..++||++...+...++ .| .+|||||. .+.+| +|...|.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 99999999999999998765 3 578899999999887765444 46 99999995 56666 88888888
Q ss_pred EEE
Q 004098 584 IIH 586 (774)
Q Consensus 584 VI~ 586 (774)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 873
No 336
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.28 E-value=1.5 Score=50.86 Aligned_cols=16 Identities=13% Similarity=0.547 Sum_probs=13.4
Q ss_pred cCccEEEEeccccccc
Q 004098 285 RGIALFAIDEVHCVSK 300 (774)
Q Consensus 285 ~~i~~iVIDEaH~l~~ 300 (774)
.++++|+||+.|.+..
T Consensus 376 ~~~DLLlIDDIq~l~g 391 (617)
T PRK14086 376 REMDILLVDDIQFLED 391 (617)
T ss_pred hcCCEEEEehhccccC
Confidence 4579999999999853
No 337
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=91.24 E-value=0.47 Score=58.16 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=65.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc-cccCcccCCcceEE
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-FGMGIDKLNVRRII 585 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a-~~~GIDip~V~~VI 585 (774)
.+.+++|.++|+.-|.+.++.+++ .++++..+++..+..++.++++.+++|+.+|+|+|.. +...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 456899999999999999988776 3678889999999999999999999999999999974 44567788888877
Q ss_pred E
Q 004098 586 H 586 (774)
Q Consensus 586 ~ 586 (774)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 3
No 338
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.18 E-value=1.7 Score=41.64 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=29.5
Q ss_pred cCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHH
Q 004098 285 RGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILK 350 (774)
Q Consensus 285 ~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~ 350 (774)
...+.+||||||.|. ......|....+..+ ..-++.|+++-...+..-|..
T Consensus 101 ~~~KviiI~~ad~l~------~~a~NaLLK~LEepp---------~~~~fiL~t~~~~~il~TI~S 151 (162)
T PF13177_consen 101 GKYKVIIIDEADKLT------EEAQNALLKTLEEPP---------ENTYFILITNNPSKILPTIRS 151 (162)
T ss_dssp SSSEEEEEETGGGS-------HHHHHHHHHHHHSTT---------TTEEEEEEES-GGGS-HHHHT
T ss_pred CCceEEEeehHhhhh------HHHHHHHHHHhcCCC---------CCEEEEEEECChHHChHHHHh
Confidence 467899999999996 344455555555443 333455555555555555544
No 339
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=91.17 E-value=4.4 Score=47.06 Aligned_cols=164 Identities=12% Similarity=0.171 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHH--Hhhh---ccCCeEEEEccchHHHHHHHH
Q 004098 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPAL---LTGKVVVVISPLISLMHDQCS 231 (774)
Q Consensus 157 ~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~--lpal---~~~~~~LVvsPt~~L~~qq~~ 231 (774)
..+++...|+.+|+...+.. ++-...+.+-.++..|==.|||.+-. +..+ ..+-.+++++|.+..++..++
T Consensus 227 ~a~r~~~~lk~~Fdi~~~s~----~~~~~fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~ 302 (738)
T PHA03368 227 HAERVERFLRTVFNTPLFSD----AAVRHFRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFE 302 (738)
T ss_pred HHHHHHHHHHHHcCCccccH----HHHHHhhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHH
Confidence 45567778888998876643 33344557788999999999997432 3322 358899999999999988888
Q ss_pred HHHhc----C-Cc-EEEEcCCCChHHHHHHHHcCC-ceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCC
Q 004098 232 KLSKH----G-VT-ACFLGSGQPDNKVEQKALRGM-YSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (774)
Q Consensus 232 ~l~~~----g-i~-~~~l~~~~~~~~~~~~~~~~~-~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~ 304 (774)
++... . -. +..+. |... .-...++. ..|.+.+-. . .+...-..++++|||||+-+.+
T Consensus 303 eI~~~le~~f~~~~v~~vk-Ge~I---~i~f~nG~kstI~FaSar------n--tNsiRGqtfDLLIVDEAqFIk~---- 366 (738)
T PHA03368 303 EIGARLRQWFGASRVDHVK-GETI---SFSFPDGSRSTIVFASSH------N--TNGIRGQDFNLLFVDEANFIRP---- 366 (738)
T ss_pred HHHHHHhhhcchhheeeec-CcEE---EEEecCCCccEEEEEecc------C--CCCccCCcccEEEEechhhCCH----
Confidence 87763 1 11 11111 1110 00011121 255555321 0 1222334689999999998863
Q ss_pred cHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHc
Q 004098 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSL 352 (774)
Q Consensus 305 fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L 352 (774)
..+..+. ..+.. .+.+++.+|-|-+.......+..|
T Consensus 367 --~al~~il---p~l~~-------~n~k~I~ISS~Ns~~~sTSFL~nL 402 (738)
T PHA03368 367 --DAVQTIM---GFLNQ-------TNCKIIFVSSTNTGKASTSFLYNL 402 (738)
T ss_pred --HHHHHHH---HHHhc-------cCccEEEEecCCCCccchHHHHhh
Confidence 2333332 22211 178899999886665555444444
No 340
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.17 E-value=5.7 Score=40.20 Aligned_cols=97 Identities=20% Similarity=0.230 Sum_probs=56.3
Q ss_pred CCCEEEEecCCCchHH-HHHHh--hhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEE
Q 004098 188 HHDCLVLAATGSGKSL-CFQIP--ALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (774)
Q Consensus 188 g~d~lv~apTGsGKTl-~~~lp--al~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Il 264 (774)
|.-+++.+++|+|||. +.++. .+..+..+++++-- +-..+..+.+..+|... .........++
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e-~~~~~l~~~~~~~~~~~-------------~~~~~~~l~~~ 81 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE-EREERILGYAKSKGWDL-------------EDYIDKSLYIV 81 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC-CCHHHHHHHHHHcCCCh-------------HHHHhCCeEEE
Confidence 5678889999999985 44443 34556778887664 44677777777776431 01111123333
Q ss_pred EEChHHHH----HHHHHHHHHHHhcCccEEEEeccccc
Q 004098 265 YVCPETVI----RLIKPLQRLAESRGIALFAIDEVHCV 298 (774)
Q Consensus 265 v~TPe~l~----~ll~~~~~~~~~~~i~~iVIDEaH~l 298 (774)
-..|..+. .+...+...+....++++|||=..-+
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l 119 (224)
T TIGR03880 82 RLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLL 119 (224)
T ss_pred ecCHHHHHhhHHHHHHHHHHHHHHhCCCEEEEcChHHH
Confidence 34554332 22222334444557899999965544
No 341
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=91.12 E-value=0.27 Score=57.33 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=48.0
Q ss_pred CCEEEEecCCCchHHHHHHhhhcc-CCeEEEEccchHHHHHHHHHHHhcC-CcEEEEcCC
Q 004098 189 HDCLVLAATGSGKSLCFQIPALLT-GKVVVVISPLISLMHDQCSKLSKHG-VTACFLGSG 246 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpal~~-~~~~LVvsPt~~L~~qq~~~l~~~g-i~~~~l~~~ 246 (774)
.++++.||||+|||..+.+|.++. ++-+||+=|.-++..-.....++.| .++..+.-.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~vfdP~ 271 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIVLDPT 271 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 589999999999999999998876 6789999999999877776666676 666666543
No 342
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=90.98 E-value=0.9 Score=51.96 Aligned_cols=106 Identities=19% Similarity=0.200 Sum_probs=64.8
Q ss_pred HHHHHHHc-----CCCEEEEecCCCchHHHHH---HhhhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHH
Q 004098 180 EALSAWLA-----HHDCLVLAATGSGKSLCFQ---IPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK 251 (774)
Q Consensus 180 ~ai~~il~-----g~d~lv~apTGsGKTl~~~---lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~ 251 (774)
..+..++. |.-++|.+|+|+|||...+ .-++.++.++++++ +-+-..|....+..+|+..
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~lg~~~----------- 317 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYSWGIDF----------- 317 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHHcCCCh-----------
Confidence 34555553 5678999999999996432 22334566888887 4566788888888887631
Q ss_pred HHHHHHcCCceEEEEChHHH--HHHHHHHHHHHHhcCccEEEEeccccc
Q 004098 252 VEQKALRGMYSIIYVCPETV--IRLIKPLQRLAESRGIALFAIDEVHCV 298 (774)
Q Consensus 252 ~~~~~~~~~~~Ilv~TPe~l--~~ll~~~~~~~~~~~i~~iVIDEaH~l 298 (774)
......+...|+-.-|..+ ..++..+...+...+.++||||=.--+
T Consensus 318 -~~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~ 365 (484)
T TIGR02655 318 -EEMEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSAL 365 (484)
T ss_pred -HHHhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 1112233344444333221 123344444555567899999987755
No 343
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.90 E-value=1.5 Score=46.74 Aligned_cols=53 Identities=25% Similarity=0.321 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHc-CCCEEEEecCCCchHHHH-HHh-hhc---cCCeEEEEccchHH
Q 004098 173 SLKNFQKEALSAWLA-HHDCLVLAATGSGKSLCF-QIP-ALL---TGKVVVVISPLISL 225 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~-g~d~lv~apTGsGKTl~~-~lp-al~---~~~~~LVvsPt~~L 225 (774)
.+.+.|.+.+..++. ++++++++|||||||... .+. .+. ...++++|-.+.+|
T Consensus 116 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 116 IMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 366777777777665 679999999999999652 222 222 24678888877776
No 344
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.85 E-value=1.6 Score=56.68 Aligned_cols=63 Identities=24% Similarity=0.279 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEecCCCchHHHHH--Hhhhc-----cCCeEEEEccchHHHHHHHHHHHhcCCc
Q 004098 173 SLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQ--IPALL-----TGKVVVVISPLISLMHDQCSKLSKHGVT 239 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g--~d~lv~apTGsGKTl~~~--lpal~-----~~~~~LVvsPt~~L~~qq~~~l~~~gi~ 239 (774)
.+++.|++|+..++.. +-++|.+..|+|||...- +-++. .+..++.++||---+ ..|...|+.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAA----k~L~e~Gi~ 1038 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAV----GEMRSAGVD 1038 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHH----HHHHhcCcc
Confidence 6899999999999975 458889999999997632 22221 245688899995544 344444554
No 345
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.83 E-value=3.8 Score=48.83 Aligned_cols=126 Identities=14% Similarity=0.059 Sum_probs=65.4
Q ss_pred CCCEEEEecCCCchHHHHHHhh-h---ccCC-eEEEEc-cc-hHHHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHcC
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA-L---LTGK-VVVVIS-PL-ISLMHDQCSKLSK-HGVTACFLGSGQPDNKVEQKALRG 259 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa-l---~~~~-~~LVvs-Pt-~~L~~qq~~~l~~-~gi~~~~l~~~~~~~~~~~~~~~~ 259 (774)
++=+.+++|||+|||.+....+ . ..+. ++.++. -+ +.=+.+|...+.+ .++++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv------------------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV------------------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc-------------------
Confidence 3446789999999997654333 2 2232 333333 22 2112233333322 34322
Q ss_pred CceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEecc
Q 004098 260 MYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339 (774)
Q Consensus 260 ~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT 339 (774)
.++.+|+.+...+. ...+.++|+||=+=+... -......+..+... ..+...++.++||
T Consensus 246 ---~~~~~~~~l~~al~------~~~~~D~VLIDTAGRs~~----d~~l~eel~~l~~~--------~~p~e~~LVLsAt 304 (767)
T PRK14723 246 ---HAVKDAADLRFALA------ALGDKHLVLIDTVGMSQR----DRNVSEQIAMLCGV--------GRPVRRLLLLNAA 304 (767)
T ss_pred ---cccCCHHHHHHHHH------HhcCCCEEEEeCCCCCcc----CHHHHHHHHHHhcc--------CCCCeEEEEECCC
Confidence 12235665443333 234568899997776531 12333333333221 1224558889999
Q ss_pred CCHHHHHHHHHHcC
Q 004098 340 ATIQVREDILKSLH 353 (774)
Q Consensus 340 ~~~~~~~~i~~~L~ 353 (774)
...+...++.+.+.
T Consensus 305 ~~~~~l~~i~~~f~ 318 (767)
T PRK14723 305 SHGDTLNEVVHAYR 318 (767)
T ss_pred CcHHHHHHHHHHHh
Confidence 88777777776653
No 346
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=90.81 E-value=1.1 Score=48.49 Aligned_cols=102 Identities=21% Similarity=0.202 Sum_probs=56.3
Q ss_pred HHHHHHc-----CCCEEEEecCCCchHH-HHHHhhh--c------cCCeEEEEccchHH-HHHHHHHHHhcCCcEEEEcC
Q 004098 181 ALSAWLA-----HHDCLVLAATGSGKSL-CFQIPAL--L------TGKVVVVISPLISL-MHDQCSKLSKHGVTACFLGS 245 (774)
Q Consensus 181 ai~~il~-----g~d~lv~apTGsGKTl-~~~lpal--~------~~~~~LVvsPt~~L-~~qq~~~l~~~gi~~~~l~~ 245 (774)
.+..+|. |.=+.+.+|.|+|||. |.++.+- . .++++++|.---.+ ..+..+...++|+..
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~----- 188 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDA----- 188 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCCh-----
Confidence 3455554 4567899999999995 4443321 1 13688888774433 222233333444321
Q ss_pred CCChHHHHHHHHcCCceEEEEC---hHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 004098 246 GQPDNKVEQKALRGMYSIIYVC---PETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (774)
Q Consensus 246 ~~~~~~~~~~~~~~~~~Ilv~T---Pe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l 298 (774)
. ..+. +|.|.. ++.+..++..+...+...++++||||=+-.+
T Consensus 189 ----~----~~l~---~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital 233 (344)
T PLN03187 189 ----D----AVLD---NIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIAL 233 (344)
T ss_pred ----h----hhcC---eEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHh
Confidence 0 1111 344443 4554455554444455567999999987655
No 347
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=90.77 E-value=3.8 Score=45.96 Aligned_cols=144 Identities=17% Similarity=0.193 Sum_probs=66.7
Q ss_pred CCCEEEEecCCCchHHHHHHhh----hccCCeEEEEccchHHHHHHHHHHHh--cCCcEEEEcCCCChHHHHH------H
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA----LLTGKVVVVISPLISLMHDQCSKLSK--HGVTACFLGSGQPDNKVEQ------K 255 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa----l~~~~~~LVvsPt~~L~~qq~~~l~~--~gi~~~~l~~~~~~~~~~~------~ 255 (774)
|.=+++.|+||.|||...+--+ +..+..+++++. -.=..|....+-. .++....+..+........ .
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSl-Em~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~ 272 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSL-EMSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAVD 272 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC-CCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 4557778899999997544222 234667778762 1223344444322 2444333333322211111 1
Q ss_pred HHcCCceEEEE-ChH-HHHHHHHHHHHHHHh-cCccEEEEeccccccc-CCCCcHHHHHHHHHHHHHhcccccccccCCC
Q 004098 256 ALRGMYSIIYV-CPE-TVIRLIKPLQRLAES-RGIALFAIDEVHCVSK-WGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331 (774)
Q Consensus 256 ~~~~~~~Ilv~-TPe-~l~~ll~~~~~~~~~-~~i~~iVIDEaH~l~~-~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~ 331 (774)
.+.+ ..+.|. +|. .+..+.......... ..+++||||=.+.+.. .+.+-...+..+..-...+..+ .++
T Consensus 273 ~l~~-~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke------~~i 345 (421)
T TIGR03600 273 RLSE-KDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKE------LDV 345 (421)
T ss_pred HHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHH------hCC
Confidence 1222 234442 322 122222222222222 2699999999888863 2222222233332222222211 168
Q ss_pred CEEEEecc
Q 004098 332 PLMALTAT 339 (774)
Q Consensus 332 ~il~lTAT 339 (774)
|++++|-.
T Consensus 346 ~Vi~lsQl 353 (421)
T TIGR03600 346 PVVLLAQL 353 (421)
T ss_pred cEEEeccc
Confidence 88888753
No 348
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.74 E-value=1.4 Score=52.89 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=16.2
Q ss_pred CCCEEEEecCCCchHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~ 206 (774)
..++|+++|+|+|||....
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4589999999999998754
No 349
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.73 E-value=3 Score=44.53 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=52.0
Q ss_pred CCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEEEEC
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVC 267 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~T 267 (774)
-+-+|+.+|+|+||||++=..|-......|=|+- -+|++. ..-.++
T Consensus 185 PKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvg-SElVqK---------------------------YiGEGa------ 230 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVG-SELVQK---------------------------YIGEGA------ 230 (406)
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCceEEEecc-HHHHHH---------------------------Hhccch------
Confidence 3679999999999999875555444444333332 233321 111111
Q ss_pred hHHHHHHHHHHHHHHHhcCccEEEEeccccccc------CCCCcHHHHHHHHHHHHHh
Q 004098 268 PETVIRLIKPLQRLAESRGIALFAIDEVHCVSK------WGHDFRPDYRRLSVLRENF 319 (774)
Q Consensus 268 Pe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~------~g~~fr~~~~~l~~l~~~~ 319 (774)
+| ...+..+..-+.-+.|.|||.|.+.. -|. =|..-+-+..|...+
T Consensus 231 --Rl---VRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~g-DrEVQRTmleLL~ql 282 (406)
T COG1222 231 --RL---VRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSG-DREVQRTMLELLNQL 282 (406)
T ss_pred --HH---HHHHHHHHhhcCCeEEEEechhhhhcccccCCCCc-hHHHHHHHHHHHHhc
Confidence 22 22233444556689999999998842 122 255555555555543
No 350
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=90.63 E-value=0.27 Score=57.77 Aligned_cols=56 Identities=21% Similarity=0.228 Sum_probs=46.2
Q ss_pred CCCEEEEecCCCchHHHHHHhhhcc-CCeEEEEccchHHHHHHHHHHHhcCCcEEEEc
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALLT-GKVVVVISPLISLMHDQCSKLSKHGVTACFLG 244 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~~-~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~ 244 (774)
.++++++||||||||..+++|.|+. .+.+||+=|.-+|........+++| ++..+.
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~~~S~VV~D~KGEl~~~Ta~~R~~~G-~V~~Fd 200 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTWPGSAIVHDIKGENWQLTAGFRARFG-RVLLFD 200 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhCCCCEEEEeCcchHHHHHHHHHHhCC-eEEEEe
Confidence 3689999999999999999999875 6789999999999887777766676 454443
No 351
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=90.62 E-value=1.1 Score=47.79 Aligned_cols=89 Identities=18% Similarity=0.162 Sum_probs=56.5
Q ss_pred CCCEEEEecCCCchHHHHHH---hhhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEE
Q 004098 188 HHDCLVLAATGSGKSLCFQI---PALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~l---pal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Il 264 (774)
|+=+.+.+|+|+|||...+- -+...++.+++|..--++-.+ .+.++|+.. -+++
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~---~a~~lGvd~--------------------~~l~ 111 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YARKLGVDI--------------------DNLL 111 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH---HHHHcCCCH--------------------HHeE
Confidence 56788999999999965332 223457788888665444432 344445421 1456
Q ss_pred EEChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 265 v~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
+..|......+.....++....+++||||-+-.+.
T Consensus 112 v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 112 VSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred EecCCCHHHHHHHHHHHhhccCCcEEEEcchhhhc
Confidence 66666555555444455555789999999988764
No 352
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.60 E-value=2.2 Score=47.52 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=15.7
Q ss_pred CEEEEecCCCchHHHHHHhh
Q 004098 190 DCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa 209 (774)
..|+.+|.|+|||.++.+.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 37889999999998765443
No 353
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.60 E-value=1.3 Score=48.56 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=17.8
Q ss_pred cCCCEEEEecCCCchHHHHHH
Q 004098 187 AHHDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~l 207 (774)
.|+-+++++|+|+|||.....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~ 187 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQK 187 (415)
T ss_pred CCCEEEEECCCCCChhHHHHH
Confidence 588999999999999975443
No 354
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.57 E-value=2.8 Score=48.82 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=16.2
Q ss_pred CEEEEecCCCchHHHHHHhh
Q 004098 190 DCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa 209 (774)
.+|+.+|.|+|||.++.+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47789999999998866554
No 355
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=90.50 E-value=0.43 Score=46.60 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=25.0
Q ss_pred cCCCEEEEecCCCchHHHHHHhh--hccCCeEEEEccchHHHHHH
Q 004098 187 AHHDCLVLAATGSGKSLCFQIPA--LLTGKVVVVISPLISLMHDQ 229 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~lpa--l~~~~~~LVvsPt~~L~~qq 229 (774)
+++++++.+|+|+|||..+...+ +...+..+..++..+|+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 47899999999999996543322 33344444445555666543
No 356
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=90.47 E-value=2.2 Score=45.78 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHH----cCC---CEEEEecCCCchHHHHH
Q 004098 174 LKNFQKEALSAWL----AHH---DCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 174 ~r~~Q~~ai~~il----~g~---d~lv~apTGsGKTl~~~ 206 (774)
++|+|...+..+. +|+ -.++.+|.|.||+..+.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~ 42 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIR 42 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHH
Confidence 3566666655544 333 46789999999996543
No 357
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=90.40 E-value=10 Score=42.25 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=31.3
Q ss_pred CEEEEecCCCchHHHHH-Hhhhc--cCCeEEEEcc--chHHHHHHHHHHHh-cCCcEEEEc
Q 004098 190 DCLVLAATGSGKSLCFQ-IPALL--TGKVVVVISP--LISLMHDQCSKLSK-HGVTACFLG 244 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~-lpal~--~~~~~LVvsP--t~~L~~qq~~~l~~-~gi~~~~l~ 244 (774)
-+++++++|+|||.+.. |...+ .+.++++|+- .|+-+.+|.+.+.+ .++++....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~ 162 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSY 162 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeec
Confidence 36778999999986543 33222 3445555542 45566666655544 455554433
No 358
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.36 E-value=1.7 Score=50.86 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=15.6
Q ss_pred EEEEecCCCchHHHHHHhh
Q 004098 191 CLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpa 209 (774)
.|+.+|.|+|||.++.+.+
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lA 59 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILA 59 (618)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999998766554
No 359
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.30 E-value=2.7 Score=50.78 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=15.6
Q ss_pred CCCEEEEecCCCchHHHH
Q 004098 188 HHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~ 205 (774)
..|+|+++|+|+|||...
T Consensus 203 ~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCceEEECCCCCCHHHHH
Confidence 358999999999999765
No 360
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.26 E-value=0.18 Score=52.42 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=19.7
Q ss_pred cCCCEEEEecCCCchHHHHHHhhh
Q 004098 187 AHHDCLVLAATGSGKSLCFQIPAL 210 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~lpal 210 (774)
...|+++++||||||||.++..|-
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk 119 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAK 119 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999998876553
No 361
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=90.26 E-value=2.2 Score=46.10 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHc--C---CCEEEEecCCCchHHHHH
Q 004098 174 LKNFQKEALSAWLA--H---HDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 174 ~r~~Q~~ai~~il~--g---~d~lv~apTGsGKTl~~~ 206 (774)
++|+|...+..+.+ + .-.++.+|.|.||+..+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~ 39 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQ 39 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHH
Confidence 35677777776653 2 257789999999997644
No 362
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.21 E-value=2.2 Score=47.70 Aligned_cols=83 Identities=23% Similarity=0.271 Sum_probs=46.7
Q ss_pred CEEEEecCCCchHHHHHHhh-h-c--cCCeEEEEc-c-chHHHHHHHHHH-HhcCCcEEEEcCCCChHHHH----HHHHc
Q 004098 190 DCLVLAATGSGKSLCFQIPA-L-L--TGKVVVVIS-P-LISLMHDQCSKL-SKHGVTACFLGSGQPDNKVE----QKALR 258 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa-l-~--~~~~~LVvs-P-t~~L~~qq~~~l-~~~gi~~~~l~~~~~~~~~~----~~~~~ 258 (774)
-+++++++|+|||.+..-.| . . .+.++++|. - .|+-+.+|...+ ...+++......+....... .....
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~ 180 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKE 180 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHh
Confidence 46788999999997643222 2 2 344555543 2 345556666554 44677766544333332221 12234
Q ss_pred CCce-EEEEChHHHH
Q 004098 259 GMYS-IIYVCPETVI 272 (774)
Q Consensus 259 ~~~~-Ilv~TPe~l~ 272 (774)
..++ |+|=||+++.
T Consensus 181 ~~~DvVIIDTaGr~~ 195 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQ 195 (428)
T ss_pred cCCCEEEEeCCCccc
Confidence 4564 8888998763
No 363
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=90.11 E-value=1.8 Score=43.68 Aligned_cols=40 Identities=28% Similarity=0.211 Sum_probs=26.0
Q ss_pred HHHHHHc-----CCCEEEEecCCCchHHHHHHhh---hccCCeEEEEc
Q 004098 181 ALSAWLA-----HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVIS 220 (774)
Q Consensus 181 ai~~il~-----g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvs 220 (774)
.+..++. |.=+++.+++|+|||...+-.+ ...+..++++.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4555554 4568899999999996533222 23466777773
No 364
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=90.01 E-value=2.8 Score=44.94 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.3
Q ss_pred cCccEEEEecccccc
Q 004098 285 RGIALFAIDEVHCVS 299 (774)
Q Consensus 285 ~~i~~iVIDEaH~l~ 299 (774)
...++|||||+|.+.
T Consensus 99 ~~~~vliiDe~d~l~ 113 (316)
T PHA02544 99 GGGKVIIIDEFDRLG 113 (316)
T ss_pred CCCeEEEEECccccc
Confidence 356899999999983
No 365
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=89.89 E-value=4.4 Score=41.13 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=32.5
Q ss_pred cCCCEEEEecCCCchHHHHH-H--hhhccCCeEEEEccchHHHHHHHHHHHhcCC
Q 004098 187 AHHDCLVLAATGSGKSLCFQ-I--PALLTGKVVVVISPLISLMHDQCSKLSKHGV 238 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~-l--pal~~~~~~LVvsPt~~L~~qq~~~l~~~gi 238 (774)
.|..+++.+|+|+|||...+ + ..+..+..+++++- .+...+..+....+|+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~-e~~~~~i~~~~~~~g~ 72 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT-EESRESIIRQAAQFGM 72 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc-cCCHHHHHHHHHHhCC
Confidence 36788999999999986432 2 23445667777764 3344555555555554
No 366
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=89.69 E-value=2.3 Score=46.87 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=34.0
Q ss_pred CCCChHHHHHHHHHHhcCCC--CCCHHHH-H----HHHHHHcCCCEEEEecCCCchHHHHH
Q 004098 153 IGSDWEVKVNSLLKKHFGHS--SLKNFQK-E----ALSAWLAHHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 153 ~~~~~~~~l~~~L~~~~g~~--~~r~~Q~-~----ai~~il~g~d~lv~apTGsGKTl~~~ 206 (774)
..|..++++.-.|+ ..|+. .+..-|+ . .++.+-++.|++..+|+|+|||..|.
T Consensus 168 ~~FT~dEWid~Llr-SiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 168 KEFTLEEWIDVLIR-SIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred hhcCHHHHHHHHHH-hcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 35666666666666 67885 2332221 1 12455568899999999999997663
No 367
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=89.64 E-value=3.4 Score=48.14 Aligned_cols=157 Identities=8% Similarity=0.002 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHH---cCCCEEEEecCCCchHHHHHHh---hhc-cCCeEEEEccchHHHHHHHHHHHhc----CCcEEEE
Q 004098 175 KNFQKEALSAWL---AHHDCLVLAATGSGKSLCFQIP---ALL-TGKVVVVISPLISLMHDQCSKLSKH----GVTACFL 243 (774)
Q Consensus 175 r~~Q~~ai~~il---~g~d~lv~apTGsGKTl~~~lp---al~-~~~~~LVvsPt~~L~~qq~~~l~~~----gi~~~~l 243 (774)
.|.-.+=|..++ +.+-.++.+|=|-|||.+-.+. ++. .+..++|.+|...-+++.++.+.+. +.. -+
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~--~~ 248 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHK--PW 248 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccc--cc
Confidence 444444455444 4567888999999999753322 222 5789999999888877777665542 200 00
Q ss_pred cCCCChHHHHHHHHcCCceEEEEChHHHH------HHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHH
Q 004098 244 GSGQPDNKVEQKALRGMYSIIYVCPETVI------RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRE 317 (774)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~------~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~ 317 (774)
...... .. ....+.-.|.|..|.... .+...-.+...-..++++|||||.-+.. +.+..+.-+..
T Consensus 249 fp~~~~--iv-~vkgg~E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~------~~l~aIlP~l~ 319 (752)
T PHA03333 249 FPEEFK--IV-TLKGTDENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNP------GALLSVLPLMA 319 (752)
T ss_pred cCCCce--EE-EeeCCeeEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCH------HHHHHHHHHHc
Confidence 000000 00 000111234444432111 0000001112223579999999998853 44444433322
Q ss_pred HhcccccccccCCCCEEEEeccCCHHHHHHHHHHc
Q 004098 318 NFGANNLKSLKFDIPLMALTATATIQVREDILKSL 352 (774)
Q Consensus 318 ~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L 352 (774)
. .+.+++.+|-+-+....-..+..|
T Consensus 320 ~----------~~~k~IiISS~~~~~s~tS~L~nL 344 (752)
T PHA03333 320 V----------KGTKQIHISSPVDADSWISRVGEV 344 (752)
T ss_pred c----------CCCceEEEeCCCCcchHHHHhhhh
Confidence 1 167888888776555444444443
No 368
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=89.59 E-value=4.3 Score=48.15 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=15.5
Q ss_pred EEEEecCCCchHHHHHHhh
Q 004098 191 CLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpa 209 (774)
.|+.+|.|.|||.++.+.+
T Consensus 43 YLF~GP~GtGKTt~AriLA 61 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIFA 61 (725)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 5889999999998765544
No 369
>PRK06904 replicative DNA helicase; Validated
Probab=89.59 E-value=5.3 Score=45.41 Aligned_cols=140 Identities=14% Similarity=0.179 Sum_probs=67.1
Q ss_pred CCEEEEecCCCchHHHHHHhh----hccCCeEEEEccchHHHHHHHHHHHhc--CCcEEEEcCC--CChHHHHH-----H
Q 004098 189 HDCLVLAATGSGKSLCFQIPA----LLTGKVVVVISPLISLMHDQCSKLSKH--GVTACFLGSG--QPDNKVEQ-----K 255 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa----l~~~~~~LVvsPt~~L~~qq~~~l~~~--gi~~~~l~~~--~~~~~~~~-----~ 255 (774)
.=+++.|.||.|||...+-.+ ...+..++|++.= .=..|.+.++-.. ++....+..+ .+..+... .
T Consensus 222 ~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~a~~ 300 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLE-MPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISSTVG 300 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHHHHHH
Confidence 335667799999997543222 2235667777542 2245555554332 4443333333 22221110 1
Q ss_pred HHcCCceEEE-----EChHHHHHHHHHHHHHHHh-cCccEEEEecccccccCCC--CcHHHHHHHHHHHHHhcccccccc
Q 004098 256 ALRGMYSIIY-----VCPETVIRLIKPLQRLAES-RGIALFAIDEVHCVSKWGH--DFRPDYRRLSVLRENFGANNLKSL 327 (774)
Q Consensus 256 ~~~~~~~Ilv-----~TPe~l~~ll~~~~~~~~~-~~i~~iVIDEaH~l~~~g~--~fr~~~~~l~~l~~~~~~~~~~~l 327 (774)
.+.....+.| .|+..+...+ ..+... ..+++||||=.+.|...+. +-...+..+..-...+..+
T Consensus 301 ~l~~~~~l~I~d~~~~t~~~i~~~~---r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAke----- 372 (472)
T PRK06904 301 MFKQKPNLYIDDSSGLTPTELRSRA---RRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKE----- 372 (472)
T ss_pred HHhcCCCEEEECCCCCCHHHHHHHH---HHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHH-----
Confidence 1222233444 2444443222 222222 3689999999998864331 1122334443333333221
Q ss_pred cCCCCEEEEec
Q 004098 328 KFDIPLMALTA 338 (774)
Q Consensus 328 ~~~~~il~lTA 338 (774)
.++|+++||-
T Consensus 373 -l~ipVi~lsQ 382 (472)
T PRK06904 373 -LKVPVVALSQ 382 (472)
T ss_pred -hCCeEEEEEe
Confidence 1788888883
No 370
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=89.51 E-value=3.4 Score=46.59 Aligned_cols=110 Identities=20% Similarity=0.186 Sum_probs=53.6
Q ss_pred CCCEEEEecCCCchHHHHHHhh---h-ccCCeEEEEccchHHHHHHHHHHHh--cCCcEEEEcCCCChHHHHH------H
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA---L-LTGKVVVVISPLISLMHDQCSKLSK--HGVTACFLGSGQPDNKVEQ------K 255 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa---l-~~~~~~LVvsPt~~L~~qq~~~l~~--~gi~~~~l~~~~~~~~~~~------~ 255 (774)
|.=++|.|+||+|||...+--+ . ..+..+++++.- .=..+....+.. .++....+..+........ .
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlE-m~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a~~ 273 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLE-MSAEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSAAG 273 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCc-CCHHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHHHHH
Confidence 4456778899999996543222 1 235567777542 223444444433 2343222222222211111 1
Q ss_pred HHcCCceEEE-EChH-HHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 256 ALRGMYSIIY-VCPE-TVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 256 ~~~~~~~Ilv-~TPe-~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
.+... .+.| -+|. .+..+............+++||||=.+.+.
T Consensus 274 ~l~~~-~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 274 KLSEA-PLYIDDTPGLTITELRAKARRLKREHGLGLIVIDYLQLMS 318 (434)
T ss_pred HHhcC-CEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcC
Confidence 12222 3333 2332 222333333334444569999999888875
No 371
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=89.49 E-value=0.73 Score=48.95 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=44.7
Q ss_pred hcCCCCCCHHHHHHHHHHHcCC-CEEEEecCCCchHHH-HHHhhhc-cCCeEEEEccchHHH
Q 004098 168 HFGHSSLKNFQKEALSAWLAHH-DCLVLAATGSGKSLC-FQIPALL-TGKVVVVISPLISLM 226 (774)
Q Consensus 168 ~~g~~~~r~~Q~~ai~~il~g~-d~lv~apTGsGKTl~-~~lpal~-~~~~~LVvsPt~~L~ 226 (774)
...|..+++-|...+..+...+ |+|+++.||||||.. ..+.+.. ...++|.+--|.+|-
T Consensus 152 li~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELq 213 (355)
T COG4962 152 LIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQ 213 (355)
T ss_pred HHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhc
Confidence 4567789999999999988766 999999999999953 3333332 344888888776663
No 372
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.46 E-value=4 Score=47.07 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=15.5
Q ss_pred EEEEecCCCchHHHHHHhh
Q 004098 191 CLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpa 209 (774)
.|+.+|.|+|||..+.+.+
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6889999999998765544
No 373
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=89.40 E-value=2.5 Score=40.85 Aligned_cols=102 Identities=21% Similarity=0.214 Sum_probs=51.6
Q ss_pred EEEEecCCCchHHHHHHhhh---ccCCeEEEEccchHHH-HHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEEEE
Q 004098 191 CLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLM-HDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYV 266 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpal---~~~~~~LVvsPt~~L~-~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~ 266 (774)
+.+..++|-|||.+++--++ -.+.+++|+-=.+.-. .--...+.++++.......+..... .... -
T Consensus 8 i~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~-------~~~~---~ 77 (173)
T TIGR00708 8 IIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWET-------QNRE---A 77 (173)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecC-------CCcH---H
Confidence 56677899999987664443 4677887774333220 0111223333333332222111000 0000 0
Q ss_pred ChHHHHHHHHHHHHHHHhcCccEEEEecccccccCC
Q 004098 267 CPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWG 302 (774)
Q Consensus 267 TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g 302 (774)
......+.+......+....+++||+||+=....+|
T Consensus 78 ~~~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~g 113 (173)
T TIGR00708 78 DTAIAKAAWQHAKEMLADPELDLVLLDELTYALKYG 113 (173)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCC
Confidence 001111223333445556789999999999998888
No 374
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=89.38 E-value=0.43 Score=56.32 Aligned_cols=77 Identities=21% Similarity=0.223 Sum_probs=67.9
Q ss_pred cccCchhHhhhhccCCCCCC-cEEEEeCchHHHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 004098 494 DLLNKPAERLSMLQEPLEDG-LTIIYVPTRKETLSIAKYLCGF-GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570 (774)
Q Consensus 494 ~~~~k~~~ll~~L~~~~~~~-~~IIF~~sr~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~ 570 (774)
--+.|.+..+..+.+.+..+ .+||-++-...+..+.+.|..+ |.++..+|++|++.+|..+..+.++|+.+|+|.|.
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 34567788888887777665 8999999999999999998875 89999999999999999999999999999999995
No 375
>PHA00729 NTP-binding motif containing protein
Probab=89.34 E-value=4.6 Score=40.85 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=20.5
Q ss_pred ceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecc
Q 004098 261 YSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEV 295 (774)
Q Consensus 261 ~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEa 295 (774)
...++.+.+.+.+.+... .....+.+++||||+
T Consensus 59 ~~~~fid~~~Ll~~L~~a--~~~~~~~dlLIIDd~ 91 (226)
T PHA00729 59 QNSYFFELPDALEKIQDA--IDNDYRIPLIIFDDA 91 (226)
T ss_pred CcEEEEEHHHHHHHHHHH--HhcCCCCCEEEEeCC
Confidence 366777777776655421 112245689999993
No 376
>PRK06321 replicative DNA helicase; Provisional
Probab=89.32 E-value=3.6 Score=46.70 Aligned_cols=151 Identities=17% Similarity=0.201 Sum_probs=70.9
Q ss_pred HHHHHHcC---CC-EEEEecCCCchHHHHHHhhh----ccCCeEEEEccchHHHHHHHHHHHh--cCCcEEEEcCCCChH
Q 004098 181 ALSAWLAH---HD-CLVLAATGSGKSLCFQIPAL----LTGKVVVVISPLISLMHDQCSKLSK--HGVTACFLGSGQPDN 250 (774)
Q Consensus 181 ai~~il~g---~d-~lv~apTGsGKTl~~~lpal----~~~~~~LVvsPt~~L~~qq~~~l~~--~gi~~~~l~~~~~~~ 250 (774)
.+..++.| .+ ++|.|.+|.|||.-.+-.+. ..+..++|++.= .=..|.+..+-. .++....+..+....
T Consensus 215 ~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~ 293 (472)
T PRK06321 215 DLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLE-MTVDQLIHRIICSRSEVESKKISVGDLSG 293 (472)
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHhhcCCCHHHhhcCCCCH
Confidence 55555543 34 46677999999975432222 235567776531 123444444432 244433332222221
Q ss_pred HHHH------HHHcCCceEEEE-ChH-HHHHHHHHHHHHHHhcCccEEEEecccccccCCC-----CcHHHHHHHHHHHH
Q 004098 251 KVEQ------KALRGMYSIIYV-CPE-TVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH-----DFRPDYRRLSVLRE 317 (774)
Q Consensus 251 ~~~~------~~~~~~~~Ilv~-TPe-~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~-----~fr~~~~~l~~l~~ 317 (774)
..+. ..+.. ..+.|- +|. .+..+............+++||||=.+.|...++ +-...+..+..-.+
T Consensus 294 ~e~~~~~~a~~~l~~-~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~LK 372 (472)
T PRK06321 294 RDFQRIVSVVNEMQE-HTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRMLK 372 (472)
T ss_pred HHHHHHHHHHHHHHc-CCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHHH
Confidence 1111 11222 245443 222 2222223223333446799999999998863331 11123333333222
Q ss_pred HhcccccccccCCCCEEEEecc
Q 004098 318 NFGANNLKSLKFDIPLMALTAT 339 (774)
Q Consensus 318 ~~~~~~~~~l~~~~~il~lTAT 339 (774)
.+..+ .++|++++|-.
T Consensus 373 ~lAke------l~vpVi~lsQL 388 (472)
T PRK06321 373 NLARE------LNIPILCLSQL 388 (472)
T ss_pred HHHHH------hCCcEEEEeec
Confidence 22211 17888888864
No 377
>PRK08939 primosomal protein DnaI; Reviewed
Probab=89.29 E-value=3.2 Score=44.32 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.1
Q ss_pred CCCEEEEecCCCchHHHH
Q 004098 188 HHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~ 205 (774)
++.+++.+|+|+|||...
T Consensus 156 ~~gl~L~G~~G~GKThLa 173 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLL 173 (306)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999643
No 378
>PRK10689 transcription-repair coupling factor; Provisional
Probab=89.28 E-value=1.1 Score=56.49 Aligned_cols=75 Identities=12% Similarity=0.128 Sum_probs=63.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc-cccCcccCCcceEE
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-FGMGIDKLNVRRII 585 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a-~~~GIDip~V~~VI 585 (774)
.+.+++|-++|+.-+.++++.+.+. ++++..++++.+.+++.++++..++|..+|||+|.. +...+.+.++.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4568999999999999999888753 568889999999999999999999999999999964 44456677888777
No 379
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=89.20 E-value=1.4 Score=56.32 Aligned_cols=119 Identities=14% Similarity=0.120 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHH---hhhcc---CCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCC
Q 004098 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQI---PALLT---GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSG 246 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~l---pal~~---~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~ 246 (774)
++++-|++||.. .+++++|.|.-|||||.+-.- -.+.. ...+|||+-|+..+.+...++.+.-..... .
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~---~ 75 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQ---Q 75 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHh---c
Confidence 368899999984 588999999999999986432 22222 245999999999998887777663211110 1
Q ss_pred CChHHHHHHHHcCCceEEEEChHHHHH-HHHHHHHHHHhcCccEEEEecccc
Q 004098 247 QPDNKVEQKALRGMYSIIYVCPETVIR-LIKPLQRLAESRGIALFAIDEVHC 297 (774)
Q Consensus 247 ~~~~~~~~~~~~~~~~Ilv~TPe~l~~-ll~~~~~~~~~~~i~~iVIDEaH~ 297 (774)
.+......+.+..-...-|+|-..+.. ++..+...+.+ +-.+=|.||...
T Consensus 76 ~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~l-dP~F~i~de~e~ 126 (1232)
T TIGR02785 76 EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDL-DPSFRILTDTEQ 126 (1232)
T ss_pred CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCC-CCCceeCCHHHH
Confidence 112122222233334567888776653 33322111111 125556777765
No 380
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=89.16 E-value=0.34 Score=56.98 Aligned_cols=57 Identities=23% Similarity=0.208 Sum_probs=45.1
Q ss_pred CCEEEEecCCCchHHHHHHhhhcc-CCeEEEEccchHHHHHHHHHHHh-cCCcEEEEcC
Q 004098 189 HDCLVLAATGSGKSLCFQIPALLT-GKVVVVISPLISLMHDQCSKLSK-HGVTACFLGS 245 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpal~~-~~~~LVvsPt~~L~~qq~~~l~~-~gi~~~~l~~ 245 (774)
++++++||||||||..+++|.++. ++.+||+=|.-++..-......+ .|.++..+.-
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~~~S~VV~D~KGE~~~~Tag~R~~~~G~~V~~fdP 234 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSWGHSSVITDLKGELWALTAGWRQKHAKNKVLRFEP 234 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhCCCCEEEEeCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 689999999999999999998874 67899999999997666555544 4666665543
No 381
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=89.13 E-value=5 Score=42.98 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHH----cCC---CEEEEecCCCchHHHHH
Q 004098 173 SLKNFQKEALSAWL----AHH---DCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 173 ~~r~~Q~~ai~~il----~g~---d~lv~apTGsGKTl~~~ 206 (774)
.++|+|...+..+. +++ -.++.+|.|.||+..+.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~ 43 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVE 43 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 35666666666654 233 57889999999996543
No 382
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=89.13 E-value=2 Score=49.94 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=15.7
Q ss_pred CEEEEecCCCchHHHHHHhh
Q 004098 190 DCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa 209 (774)
-.|+.+|.|+|||.++-+.+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36789999999998765443
No 383
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=89.06 E-value=0.65 Score=55.34 Aligned_cols=62 Identities=23% Similarity=0.340 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHH--Hhhhc-----cCCeEEEEccchHHHHHHHHHHHhc
Q 004098 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPALL-----TGKVVVVISPLISLMHDQCSKLSKH 236 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~--lpal~-----~~~~~LVvsPt~~L~~qq~~~l~~~ 236 (774)
.+++-|++|+... ...++|.|..|||||.+-. +.-|. ....+|+|+.|+..+.+..+.+.+.
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 4789999998763 5689999999999997532 22222 2457999999999999988888763
No 384
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.05 E-value=4.5 Score=47.56 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=16.4
Q ss_pred CCEEEEecCCCchHHHHHHhh
Q 004098 189 HDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa 209 (774)
..+|+.+|.|+|||..+...+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred ceEEEECCCCCChHHHHHHHH
Confidence 356899999999998765444
No 385
>PRK09165 replicative DNA helicase; Provisional
Probab=89.04 E-value=4.3 Score=46.55 Aligned_cols=108 Identities=13% Similarity=0.134 Sum_probs=54.4
Q ss_pred CCEEEEecCCCchHHHHHHhhh----c--------------cCCeEEEEccchHHHHHHHHHHHh--cCCcEEEEcCCCC
Q 004098 189 HDCLVLAATGSGKSLCFQIPAL----L--------------TGKVVVVISPLISLMHDQCSKLSK--HGVTACFLGSGQP 248 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpal----~--------------~~~~~LVvsPt~~L~~qq~~~l~~--~gi~~~~l~~~~~ 248 (774)
.=++|.|+||.|||...+--+. . .+..++|++. -.=..|.+..+.. .+++.-.+..+..
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s~v~~~~i~~~~l 296 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQSEISSSKIRRGKI 296 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhcCCCHHHHhcCCC
Confidence 4467788999999965432221 1 1456777754 2224555555533 2454333333322
Q ss_pred hHHHHHHHH-----cCCceEEEE-----ChHHHHHHHHHHHHHHHhcCccEEEEeccccccc
Q 004098 249 DNKVEQKAL-----RGMYSIIYV-----CPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (774)
Q Consensus 249 ~~~~~~~~~-----~~~~~Ilv~-----TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~ 300 (774)
.......+. -....+.|- |++.+...+ ..+.....+++||||=.|.|..
T Consensus 297 ~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~i---r~l~~~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 297 SEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARA---RRLKRQHGLDLLVVDYLQLIRG 355 (497)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHH---HHHHHhcCCCEEEEcchHhccC
Confidence 221111111 112234443 334333322 3333346799999999998864
No 386
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=89.01 E-value=2 Score=49.42 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=20.8
Q ss_pred CCEEEEecCCCchHHHHHHhhhccCCe
Q 004098 189 HDCLVLAATGSGKSLCFQIPALLTGKV 215 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpal~~~~~ 215 (774)
+-+|+.+|.|+|||+.+-..+...+..
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~~~~ 303 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALESRSR 303 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhCCCe
Confidence 358999999999999887776644433
No 387
>PRK05636 replicative DNA helicase; Provisional
Probab=88.91 E-value=3.2 Score=47.55 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=50.7
Q ss_pred EEEEecCCCchHHHHH-Hh---hhccCCeEEEEccchHHHHHHHHHHHh--cCCcEEEEcCCCChHHHHHH------HHc
Q 004098 191 CLVLAATGSGKSLCFQ-IP---ALLTGKVVVVISPLISLMHDQCSKLSK--HGVTACFLGSGQPDNKVEQK------ALR 258 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~-lp---al~~~~~~LVvsPt~~L~~qq~~~l~~--~gi~~~~l~~~~~~~~~~~~------~~~ 258 (774)
+++.+.||.|||...+ +. ++..+..++|++. -.-..|.+..+-. -++....+..+......+.+ .+.
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSl-EMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~~~~a~~~l~ 346 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSL-EMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQRLGKIA 346 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEe-eCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 4668899999996433 21 1223556667633 1112333333322 13332222233222111111 122
Q ss_pred CCceEEEE-ChH-HHHHHHHHHHHHHHhcCccEEEEeccccccc
Q 004098 259 GMYSIIYV-CPE-TVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (774)
Q Consensus 259 ~~~~Ilv~-TPe-~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~ 300 (774)
. ..+.|- +|. ++..+......+.....+++||||=.|.|..
T Consensus 347 ~-~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~ 389 (505)
T PRK05636 347 Q-APIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMSS 389 (505)
T ss_pred c-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCC
Confidence 2 234442 333 2223333233333446799999999999863
No 388
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=88.89 E-value=2.8 Score=50.17 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=16.9
Q ss_pred CCEEEEecCCCchHHHHHHhh
Q 004098 189 HDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa 209 (774)
.++++.+|+|+|||..+.+.+
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA 73 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIA 73 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 379999999999998765444
No 389
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=88.86 E-value=11 Score=43.70 Aligned_cols=102 Identities=19% Similarity=0.267 Sum_probs=72.3
Q ss_pred CcEEEEeCchHHHHHHHHHHHhCCC-------ceEEecCCCCHHHHHHHHHHHh----cCCceEEEEec--ccccCcccC
Q 004098 513 GLTIIYVPTRKETLSIAKYLCGFGV-------KAAAYNASLPKSQLRRVHTEFH----ENKLEVVVATI--AFGMGIDKL 579 (774)
Q Consensus 513 ~~~IIF~~sr~~~~~l~~~L~~~g~-------~~~~~h~~l~~~~R~~~~~~F~----~g~~~vLVAT~--a~~~GIDip 579 (774)
+-+++|.++-.....+.+.+.+.|+ +...|-..-+ -..+++.|. .|.-.+|.|.. -+++|||+.
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFS 706 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccccc
Confidence 5699999999999999998887654 3344443333 345566554 56666777764 478999998
Q ss_pred C--cceEEEeCCCCC--------------------------------HHHHHHHhhccccCCCcceEEEEee
Q 004098 580 N--VRRIIHYGWPQS--------------------------------LEAYYQEAGRAGRDGHLADCVLYAN 617 (774)
Q Consensus 580 ~--V~~VI~~d~p~s--------------------------------~~~y~Qr~GRaGR~G~~g~~il~~~ 617 (774)
| .|.||..++|.. +.+--|-||||=|.-+.=-+|++++
T Consensus 707 D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLD 778 (821)
T ss_pred cccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEeh
Confidence 7 789999998742 1123489999999877666666665
No 390
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=88.83 E-value=4.7 Score=40.76 Aligned_cols=95 Identities=21% Similarity=0.312 Sum_probs=49.8
Q ss_pred CCCEEEEecCCCchHHHH-HHhhh--ccC------CeEEEEccchHHHHHHHHH-HHhcCCcEEEEcCCCChHHHHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCF-QIPAL--LTG------KVVVVISPLISLMHDQCSK-LSKHGVTACFLGSGQPDNKVEQKAL 257 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~-~lpal--~~~------~~~LVvsPt~~L~~qq~~~-l~~~gi~~~~l~~~~~~~~~~~~~~ 257 (774)
|+=+.+.+|+|+|||... ++.+. ..+ ..+++|..-..+-.+.... ...++.. . ....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~---------~----~~~~ 85 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLD---------P----EEVL 85 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccc---------h----hhhh
Confidence 566888999999999743 33322 233 6777776643322212211 1122211 0 0111
Q ss_pred cCCceEEEE---ChHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 004098 258 RGMYSIIYV---CPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (774)
Q Consensus 258 ~~~~~Ilv~---TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l 298 (774)
. +|.|. +++.+...+..+........+++||||-.-.+
T Consensus 86 ~---~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l 126 (226)
T cd01393 86 D---NIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAAL 126 (226)
T ss_pred c---cEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchh
Confidence 1 24443 45555555444333333568999999987665
No 391
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=88.70 E-value=2.4 Score=45.14 Aligned_cols=56 Identities=18% Similarity=0.270 Sum_probs=33.1
Q ss_pred CChHHHHH-HHHHHhcCCCCCCHHHHHHHHHHHc-CC--CEEEEecCCCchHHHHHHhhhc
Q 004098 155 SDWEVKVN-SLLKKHFGHSSLKNFQKEALSAWLA-HH--DCLVLAATGSGKSLCFQIPALL 211 (774)
Q Consensus 155 ~~~~~~l~-~~L~~~~g~~~~r~~Q~~ai~~il~-g~--d~lv~apTGsGKTl~~~lpal~ 211 (774)
.++.+.++ +.|..++|-..+-. |.-.+..++. ++ .+|+++|.|+|||..+-+.+..
T Consensus 126 ~PLaermRPktL~dyvGQ~hlv~-q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~t 185 (554)
T KOG2028|consen 126 KPLAERMRPKTLDDYVGQSHLVG-QDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIAST 185 (554)
T ss_pred CChhhhcCcchHHHhcchhhhcC-cchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhh
Confidence 34444432 34666666543322 3444455443 33 7899999999999876655543
No 392
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.62 E-value=12 Score=42.39 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=17.7
Q ss_pred CEEEEeccCCHHHHHHHHHHcCC
Q 004098 332 PLMALTATATIQVREDILKSLHM 354 (774)
Q Consensus 332 ~il~lTAT~~~~~~~~i~~~L~~ 354 (774)
.++.|+||.......++...+.-
T Consensus 368 ~~LVLdAt~~~~~l~~i~~~f~~ 390 (484)
T PRK06995 368 RLLLLNATSHGDTLNEVVQAYRG 390 (484)
T ss_pred eEEEEeCCCcHHHHHHHHHHhcc
Confidence 57889999888877777766643
No 393
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=88.61 E-value=0.49 Score=54.04 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=31.1
Q ss_pred cCCCCCCHHHHHHHHHHH----cCCCEEEEecCCCchHHHHHHhh
Q 004098 169 FGHSSLKNFQKEALSAWL----AHHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 169 ~g~~~~r~~Q~~ai~~il----~g~d~lv~apTGsGKTl~~~lpa 209 (774)
|.| +|+.+|.+.+..+. +|+=.|.-.|||+||||.-+-.+
T Consensus 12 fPy-~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaa 55 (821)
T KOG1133|consen 12 FPY-TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAA 55 (821)
T ss_pred CCC-CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHH
Confidence 344 68999999887765 58988999999999998644333
No 394
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=88.59 E-value=3.8 Score=40.19 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=13.9
Q ss_pred hcCccEEEEeccccccc
Q 004098 284 SRGIALFAIDEVHCVSK 300 (774)
Q Consensus 284 ~~~i~~iVIDEaH~l~~ 300 (774)
.....+|||||+|.+..
T Consensus 94 ~~~~kviiide~~~l~~ 110 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE 110 (188)
T ss_pred cCCeEEEEEechhhhCH
Confidence 35678999999999963
No 395
>PRK11054 helD DNA helicase IV; Provisional
Probab=88.55 E-value=1.2 Score=52.91 Aligned_cols=78 Identities=21% Similarity=0.253 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhh--h-----ccCCeEEEEccchHH
Q 004098 156 DWEVKVNSLLKKHFG---HSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPA--L-----LTGKVVVVISPLISL 225 (774)
Q Consensus 156 ~~~~~l~~~L~~~~g---~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpa--l-----~~~~~~LVvsPt~~L 225 (774)
.|.+.....++..|. -..+++-|++|+..- ..+++|.|..|||||.+..--+ | ..+..+|+++.++..
T Consensus 176 ~~~~~~l~~~~~~f~~~e~~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~A 253 (684)
T PRK11054 176 AWTEAMLEEYADFFSQVESSPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQA 253 (684)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHH
Confidence 344444544554553 246999999998643 3578999999999997643222 1 134589999999999
Q ss_pred HHHHHHHHHh
Q 004098 226 MHDQCSKLSK 235 (774)
Q Consensus 226 ~~qq~~~l~~ 235 (774)
+....+.+.+
T Consensus 254 A~em~eRL~~ 263 (684)
T PRK11054 254 AEEMDERIRE 263 (684)
T ss_pred HHHHHHHHHH
Confidence 9988888866
No 396
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=88.41 E-value=7.2 Score=37.18 Aligned_cols=100 Identities=19% Similarity=0.103 Sum_probs=50.8
Q ss_pred EEEEecCCCchHHHHHHhhh---ccCCeEEEEccchHH-HHHHHHHHHhcC-CcEEEEcCCCChHHHHHHHHcCCceEEE
Q 004098 191 CLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISL-MHDQCSKLSKHG-VTACFLGSGQPDNKVEQKALRGMYSIIY 265 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpal---~~~~~~LVvsPt~~L-~~qq~~~l~~~g-i~~~~l~~~~~~~~~~~~~~~~~~~Ilv 265 (774)
+.|.-++|.|||.+++--++ -.+.+++++-=.+.- -.--...+.+++ +.......+.... .. +
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~-------~~--~--- 72 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWT-------TE--N--- 72 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccC-------CC--C---
Confidence 45667889999987664443 467788885444432 111122334432 2222211110000 00 0
Q ss_pred EChHHH---HHHHHHHHHHHHhcCccEEEEecccccccCCC
Q 004098 266 VCPETV---IRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303 (774)
Q Consensus 266 ~TPe~l---~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~ 303 (774)
.++.. ...+......+.....++||+||.=....+|-
T Consensus 73 -~~~~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gl 112 (159)
T cd00561 73 -DEEDIAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGL 112 (159)
T ss_pred -hHHHHHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCC
Confidence 01111 11222234445567899999999999988883
No 397
>PRK08760 replicative DNA helicase; Provisional
Probab=88.40 E-value=3.6 Score=46.84 Aligned_cols=107 Identities=21% Similarity=0.181 Sum_probs=54.3
Q ss_pred CCEEEEecCCCchHHHHHHhh----hccCCeEEEEccchHHHHHHHHHHHhc--CCcEEEEcCCCChHHHHH------HH
Q 004098 189 HDCLVLAATGSGKSLCFQIPA----LLTGKVVVVISPLISLMHDQCSKLSKH--GVTACFLGSGQPDNKVEQ------KA 256 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa----l~~~~~~LVvsPt~~L~~qq~~~l~~~--gi~~~~l~~~~~~~~~~~------~~ 256 (774)
.=++|.|.||.|||...+-.+ ...+..++|++.= .=..|....+... ++....+..+......+. ..
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a~~~ 308 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSME-MSASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIKM 308 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEecc-CCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHHHHH
Confidence 345668899999997544322 2235567776542 2234555555443 233322333322211111 11
Q ss_pred HcCCceEEEE-----ChHHHHHHHHHHHHHHHhcCccEEEEeccccccc
Q 004098 257 LRGMYSIIYV-----CPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (774)
Q Consensus 257 ~~~~~~Ilv~-----TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~ 300 (774)
+.. ..+.|- |++.+... ...+.....+++||||=.+.|..
T Consensus 309 l~~-~~l~I~d~~~~t~~~I~~~---~r~l~~~~~~~lVvIDyLql~~~ 353 (476)
T PRK08760 309 LKE-TKIFIDDTPGVSPEVLRSK---CRRLKREHDLGLIVIDYLQLMSV 353 (476)
T ss_pred Hhc-CCEEEeCCCCCCHHHHHHH---HHHHHHhcCCCEEEEecHHhcCC
Confidence 222 344433 34444332 23333446799999999988853
No 398
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=88.39 E-value=4 Score=54.40 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEecCCCchHHHHH--Hhhh-ccCCeEEEEccchHHHH
Q 004098 173 SLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQ--IPAL-LTGKVVVVISPLISLMH 227 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g--~d~lv~apTGsGKTl~~~--lpal-~~~~~~LVvsPt~~L~~ 227 (774)
.+.+-|++|+..++.. +=.+|.++.|+|||.+.. +-++ ..+..+++++||-.-+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~ 488 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQ 488 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 5889999999999975 457889999999997532 2222 24778999999965443
No 399
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=88.32 E-value=3.1 Score=40.68 Aligned_cols=86 Identities=21% Similarity=0.223 Sum_probs=46.9
Q ss_pred EEEEecCCCchHHHHHHhhh---ccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEEEEC
Q 004098 191 CLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVC 267 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpal---~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~T 267 (774)
.++.+|+.||||.--+--+- ..+.+++|..|-+. .+++...+.-..|... .-++|-.
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD---------~R~~~~~V~Sr~G~~~-----------~A~~i~~ 66 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID---------TRYGVGKVSSRIGLSS-----------EAVVIPS 66 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc---------cccccceeeeccCCcc-----------cceecCC
Confidence 57899999999974332221 34667777777432 1122222222222221 2455556
Q ss_pred hHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 268 PETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 268 Pe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
+..+...+... .....++.|.||||+-+.
T Consensus 67 ~~~i~~~i~~~---~~~~~~~~v~IDEaQF~~ 95 (201)
T COG1435 67 DTDIFDEIAAL---HEKPPVDCVLIDEAQFFD 95 (201)
T ss_pred hHHHHHHHHhc---ccCCCcCEEEEehhHhCC
Confidence 66554444321 111227899999999764
No 400
>PRK05595 replicative DNA helicase; Provisional
Probab=88.29 E-value=3.2 Score=46.96 Aligned_cols=152 Identities=22% Similarity=0.196 Sum_probs=72.0
Q ss_pred HHHHHHc----CCCEEEEecCCCchHHHHHHhh----hccCCeEEEEccchHHHHHHHHHHHh--cCCcEEEEcCCCChH
Q 004098 181 ALSAWLA----HHDCLVLAATGSGKSLCFQIPA----LLTGKVVVVISPLISLMHDQCSKLSK--HGVTACFLGSGQPDN 250 (774)
Q Consensus 181 ai~~il~----g~d~lv~apTGsGKTl~~~lpa----l~~~~~~LVvsPt~~L~~qq~~~l~~--~gi~~~~l~~~~~~~ 250 (774)
.+..++. |.=++|.|.||.|||...+--+ ...+..+++++.= .=..|....+-. .++....+..+....
T Consensus 190 ~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlE-ms~~~l~~R~~a~~~~v~~~~~~~~~l~~ 268 (444)
T PRK05595 190 ELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLE-MSKEQLAYKLLCSEANVDMLRLRTGNLED 268 (444)
T ss_pred HHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecC-CCHHHHHHHHHHHhcCCCHHHHhcCCCCH
Confidence 5555543 3345668899999997544222 2346677777652 223444444332 244433333332221
Q ss_pred HHHHHHHc-----CCceEEEE-ChHH-HHHHHHHHHHHHHhcCccEEEEecccccccCCC-CcH-HHHHHHHHHHHHhcc
Q 004098 251 KVEQKALR-----GMYSIIYV-CPET-VIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH-DFR-PDYRRLSVLRENFGA 321 (774)
Q Consensus 251 ~~~~~~~~-----~~~~Ilv~-TPe~-l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~-~fr-~~~~~l~~l~~~~~~ 321 (774)
..+..+.. ....+.|- +|+. +..+......+....++++||||=.|.|...+. +-+ ..+..+..-.+.+..
T Consensus 269 ~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAk 348 (444)
T PRK05595 269 KDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAK 348 (444)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 11111110 11233332 3221 222333333333346799999999999864221 112 233333222222221
Q ss_pred cccccccCCCCEEEEecc
Q 004098 322 NNLKSLKFDIPLMALTAT 339 (774)
Q Consensus 322 ~~~~~l~~~~~il~lTAT 339 (774)
+ .++|++++|-.
T Consensus 349 e------~~i~vi~lsQL 360 (444)
T PRK05595 349 E------MECPVIALSQL 360 (444)
T ss_pred H------hCCeEEEeecc
Confidence 1 17888888753
No 401
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=88.18 E-value=2.7 Score=42.79 Aligned_cols=95 Identities=18% Similarity=0.239 Sum_probs=51.1
Q ss_pred CCCEEEEecCCCchHHHH-HHhhh--cc------CCeEEEEccchHH-HHHHHHHHHhcCCcEEEEcCCCChHHHHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCF-QIPAL--LT------GKVVVVISPLISL-MHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL 257 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~-~lpal--~~------~~~~LVvsPt~~L-~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~ 257 (774)
|+=+.+.+|+|+|||... ++.+. .. +..+++|.---.. .....+.+..++.. . ....
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~---------~----~~~~ 85 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLD---------P----EEVL 85 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccC---------h----HhHh
Confidence 566788999999999644 34332 22 2577777642211 11112222222321 0 1111
Q ss_pred cCCceEEEE---ChHHHHHHHHHHHHHHHhc-CccEEEEeccccc
Q 004098 258 RGMYSIIYV---CPETVIRLIKPLQRLAESR-GIALFAIDEVHCV 298 (774)
Q Consensus 258 ~~~~~Ilv~---TPe~l~~ll~~~~~~~~~~-~i~~iVIDEaH~l 298 (774)
. +|.+. +.+.+..++..+...+... ++++||||-.-.+
T Consensus 86 -~--~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~ 127 (235)
T cd01123 86 -D--NIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTAL 127 (235)
T ss_pred -c--CEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHH
Confidence 1 23333 3455555555555555555 8999999998866
No 402
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=88.13 E-value=0.72 Score=45.98 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=17.5
Q ss_pred CCEEEEecCCCchHHHHHHhh
Q 004098 189 HDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa 209 (774)
-++++.+|+|.|||.+.+..+
T Consensus 49 P~liisGpPG~GKTTsi~~LA 69 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLA 69 (333)
T ss_pred CceEeeCCCCCchhhHHHHHH
Confidence 489999999999999865444
No 403
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=88.05 E-value=1.4 Score=50.82 Aligned_cols=85 Identities=20% Similarity=0.238 Sum_probs=68.6
Q ss_pred hhhhccCCCCCCcEEEEeCchHHHHHH----HHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc-cccCc
Q 004098 502 RLSMLQEPLEDGLTIIYVPTRKETLSI----AKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-FGMGI 576 (774)
Q Consensus 502 ll~~L~~~~~~~~~IIF~~sr~~~~~l----~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a-~~~GI 576 (774)
++..+...-.+..+..-++|---|+.. .++|...|+.+..+.|.+..+.|++++++..+|+++++|.|-| +...+
T Consensus 301 ~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V 380 (677)
T COG1200 301 LLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKV 380 (677)
T ss_pred HHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcce
Confidence 344444444566899999996555554 4455557999999999999999999999999999999999987 67789
Q ss_pred ccCCcceEEE
Q 004098 577 DKLNVRRIIH 586 (774)
Q Consensus 577 Dip~V~~VI~ 586 (774)
++.+.-+||.
T Consensus 381 ~F~~LgLVIi 390 (677)
T COG1200 381 EFHNLGLVII 390 (677)
T ss_pred eecceeEEEE
Confidence 9999888883
No 404
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.03 E-value=6.2 Score=45.26 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=14.6
Q ss_pred EEEEecCCCchHHHHHHh
Q 004098 191 CLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lp 208 (774)
.|+.+|.|+|||.++.+.
T Consensus 39 ~Lf~GppGtGKTTlA~~l 56 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLI 56 (504)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 499999999999875443
No 405
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=87.97 E-value=0.92 Score=50.54 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=54.6
Q ss_pred EEEEeCchHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec-----ccccC----cccCCc
Q 004098 515 TIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFGMG----IDKLNV 581 (774)
Q Consensus 515 ~IIF~~sr~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~-----a~~~G----IDip~V 581 (774)
+||+++||+-|..+.+.|.. .+|++..+.|||....+++++++ ..+|+|||. +...+ =++.+|
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~v 341 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKKV 341 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhhc
Confidence 89999999999999999875 48999999999999999998877 678999995 22222 145567
Q ss_pred ceEEE
Q 004098 582 RRIIH 586 (774)
Q Consensus 582 ~~VI~ 586 (774)
++.|.
T Consensus 342 kcLVl 346 (731)
T KOG0347|consen 342 KCLVL 346 (731)
T ss_pred eEEEE
Confidence 77663
No 406
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=87.91 E-value=4.7 Score=39.59 Aligned_cols=107 Identities=20% Similarity=0.131 Sum_probs=57.9
Q ss_pred HcCCCEEEEecCCCchHHHHHHhh---hccCCeEEEEccchHHH-HHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHcCC
Q 004098 186 LAHHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLM-HDQCSKLSKH-GVTACFLGSGQPDNKVEQKALRGM 260 (774)
Q Consensus 186 l~g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~L~-~qq~~~l~~~-gi~~~~l~~~~~~~~~~~~~~~~~ 260 (774)
+....+++..++|-|||.+++--+ +-.+.+++|+--++.-. .--...+.+. ++.......+.... ...
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~-------~~~ 92 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWE-------TQD 92 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCccc-------CCC
Confidence 345689999999999998776444 34678888886655431 1222333332 22222211110000 000
Q ss_pred ceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCC
Q 004098 261 YSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWG 302 (774)
Q Consensus 261 ~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g 302 (774)
..- ......+.+......+.....++||+||.=...++|
T Consensus 93 ~~e---~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~g 131 (191)
T PRK05986 93 RER---DIAAAREGWEEAKRMLADESYDLVVLDELTYALKYG 131 (191)
T ss_pred cHH---HHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCC
Confidence 000 001111223333445556789999999999999888
No 407
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=87.86 E-value=1.3 Score=47.18 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=15.0
Q ss_pred CCEEEEecCCCchHHHHH
Q 004098 189 HDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~ 206 (774)
.++++.+|+|+|||....
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 468999999999996554
No 408
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.81 E-value=3.2 Score=47.94 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=15.5
Q ss_pred EEEEecCCCchHHHHHHhh
Q 004098 191 CLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpa 209 (774)
.|+.+|.|+|||.++.+.+
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lA 59 (527)
T PRK14969 41 YLFTGTRGVGKTTLARILA 59 (527)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999998765544
No 409
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=87.79 E-value=2.6 Score=44.49 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.0
Q ss_pred CCCEEEEecCCCchHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~ 206 (774)
++.+++++|||+|||.+..
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4567889999999996543
No 410
>PRK08840 replicative DNA helicase; Provisional
Probab=87.73 E-value=7.7 Score=44.00 Aligned_cols=143 Identities=16% Similarity=0.160 Sum_probs=66.2
Q ss_pred CCCEEEEecCCCchHHHHHHh----hhccCCeEEEEccchHHHHHHHHHHHh--cCCcEEEEcCCCChHHHHHH------
Q 004098 188 HHDCLVLAATGSGKSLCFQIP----ALLTGKVVVVISPLISLMHDQCSKLSK--HGVTACFLGSGQPDNKVEQK------ 255 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lp----al~~~~~~LVvsPt~~L~~qq~~~l~~--~gi~~~~l~~~~~~~~~~~~------ 255 (774)
|.=+++.|.||.|||...+-. +...+..++|++.= .=..|.+.++-. -++....+..+.-....+..
T Consensus 217 g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~ 295 (464)
T PRK08840 217 SDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLE-MPAEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMG 295 (464)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 344566889999999754322 22345667777542 224455555433 24433333333222111111
Q ss_pred HHcCCceEEEE-ChH-HHHHHHHHHHHHHHh-cCccEEEEecccccccCCCC-cH-HHHHHHHHHHHHhcccccccccCC
Q 004098 256 ALRGMYSIIYV-CPE-TVIRLIKPLQRLAES-RGIALFAIDEVHCVSKWGHD-FR-PDYRRLSVLRENFGANNLKSLKFD 330 (774)
Q Consensus 256 ~~~~~~~Ilv~-TPe-~l~~ll~~~~~~~~~-~~i~~iVIDEaH~l~~~g~~-fr-~~~~~l~~l~~~~~~~~~~~l~~~ 330 (774)
.+.....+.|- +|. ++..+......+... ..+++||||=.|.|...+.. -| ..+..+..-.+.+..+ .+
T Consensus 296 ~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAke------l~ 369 (464)
T PRK08840 296 ILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKE------LN 369 (464)
T ss_pred HHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHH------hC
Confidence 12122233332 222 222222222333222 35899999999988533321 12 2233333222222211 16
Q ss_pred CCEEEEe
Q 004098 331 IPLMALT 337 (774)
Q Consensus 331 ~~il~lT 337 (774)
+|+++||
T Consensus 370 ipVi~Ls 376 (464)
T PRK08840 370 VPVVALS 376 (464)
T ss_pred CeEEEEE
Confidence 8888887
No 411
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.71 E-value=5.1 Score=47.00 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=15.9
Q ss_pred CEEEEecCCCchHHHHHHhh
Q 004098 190 DCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa 209 (774)
-.|+.+|.|.|||.++.+.+
T Consensus 40 a~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 37899999999998765444
No 412
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=87.59 E-value=3.6 Score=44.52 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHc----CC---CEEEEecCCCchHHHHH
Q 004098 174 LKNFQKEALSAWLA----HH---DCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 174 ~r~~Q~~ai~~il~----g~---d~lv~apTGsGKTl~~~ 206 (774)
++|+|..++..+.+ |+ -.|+.+|.|.||+..+.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~ 42 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHH
Confidence 56777777776652 33 46789999999997543
No 413
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.53 E-value=0.88 Score=50.79 Aligned_cols=36 Identities=31% Similarity=0.395 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHcCCC--EEEEecCCCchHHH-HHHh
Q 004098 173 SLKNFQKEALSAWLAHHD--CLVLAATGSGKSLC-FQIP 208 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d--~lv~apTGsGKTl~-~~lp 208 (774)
.+.+.|.+.+..+++... +||.+|||||||.+ |.+.
T Consensus 241 g~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L 279 (500)
T COG2804 241 GMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAAL 279 (500)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 347889999999987655 67789999999975 4433
No 414
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=87.53 E-value=0.73 Score=55.51 Aligned_cols=63 Identities=25% Similarity=0.304 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHH--Hhhhc-----cCCeEEEEccchHHHHHHHHHHHhc
Q 004098 172 SSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPALL-----TGKVVVVISPLISLMHDQCSKLSKH 236 (774)
Q Consensus 172 ~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~--lpal~-----~~~~~LVvsPt~~L~~qq~~~l~~~ 236 (774)
..++|-|++|+... ...++|.|..|||||.+-. +.-|. ....+|+|+.|+..+.+..+.+.+.
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 35899999999753 4689999999999996522 22222 3457999999999999998888774
No 415
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=87.48 E-value=3.7 Score=46.86 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=16.1
Q ss_pred CCCEEEEecCCCchHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~ 206 (774)
.+.+|+.+|+|+|||+...
T Consensus 216 p~GILLyGPPGTGKT~LAK 234 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAK 234 (512)
T ss_pred CcceEEECCCCCcHHHHHH
Confidence 4679999999999998653
No 416
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=87.47 E-value=0.83 Score=55.05 Aligned_cols=63 Identities=25% Similarity=0.315 Sum_probs=48.6
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHH--Hhhhc-----cCCeEEEEccchHHHHHHHHHHHhc
Q 004098 172 SSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPALL-----TGKVVVVISPLISLMHDQCSKLSKH 236 (774)
Q Consensus 172 ~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~--lpal~-----~~~~~LVvsPt~~L~~qq~~~l~~~ 236 (774)
..|++-|++|+... ...++|.|..|||||.+-. +.-|. ....+|+|+.|+..+.+..+.+.+.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 46899999998753 4689999999999996522 22222 3458999999999999988888774
No 417
>CHL00176 ftsH cell division protein; Validated
Probab=87.47 E-value=1.7 Score=51.07 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=16.9
Q ss_pred CCEEEEecCCCchHHHHHHhh
Q 004098 189 HDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa 209 (774)
+.+|+.+|+|+|||+.+...+
T Consensus 217 ~gVLL~GPpGTGKT~LAralA 237 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIA 237 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 579999999999998764433
No 418
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=87.41 E-value=2.9 Score=46.77 Aligned_cols=110 Identities=22% Similarity=0.296 Sum_probs=59.6
Q ss_pred CCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEEEEC-
Q 004098 189 HDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVC- 267 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~T- 267 (774)
+-+|+++|+|+|||+.+-..+ .+.+++..+..|..-+ .++|+-
T Consensus 338 KGVLLvGPPGTGKTlLARAvA------------------------GEA~VPFF~~sGSEFd------------Em~VGvG 381 (752)
T KOG0734|consen 338 KGVLLVGPPGTGKTLLARAVA------------------------GEAGVPFFYASGSEFD------------EMFVGVG 381 (752)
T ss_pred CceEEeCCCCCchhHHHHHhh------------------------cccCCCeEeccccchh------------hhhhccc
Confidence 579999999999998642211 1234444333332211 122222
Q ss_pred hHHHHHHHHHHHHHHHhcCccEEEEecccccccC-----CCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCH
Q 004098 268 PETVIRLIKPLQRLAESRGIALFAIDEVHCVSKW-----GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATI 342 (774)
Q Consensus 268 Pe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~-----g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~ 342 (774)
.-++.+++. .....--+.|.|||.|.+..- .|.-+..+.+|..-...| .++-.||.+.||--+
T Consensus 382 ArRVRdLF~----aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF--------~qNeGiIvigATNfp 449 (752)
T KOG0734|consen 382 ARRVRDLFA----AAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGF--------KQNEGIIVIGATNFP 449 (752)
T ss_pred HHHHHHHHH----HHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCc--------CcCCceEEEeccCCh
Confidence 223334433 223345689999999998641 111122233332222333 347789999999766
Q ss_pred HHHH
Q 004098 343 QVRE 346 (774)
Q Consensus 343 ~~~~ 346 (774)
+..+
T Consensus 450 e~LD 453 (752)
T KOG0734|consen 450 EALD 453 (752)
T ss_pred hhhh
Confidence 6554
No 419
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=87.25 E-value=6.2 Score=42.53 Aligned_cols=139 Identities=15% Similarity=0.146 Sum_probs=77.4
Q ss_pred CCCHHHHHHHHHHHcCCCE------EEEecCCCchHHHHHHhhhcc--CCeEEEEcc-----chHHHHHHHHHHHhcCCc
Q 004098 173 SLKNFQKEALSAWLAHHDC------LVLAATGSGKSLCFQIPALLT--GKVVVVISP-----LISLMHDQCSKLSKHGVT 239 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d~------lv~apTGsGKTl~~~lpal~~--~~~~LVvsP-----t~~L~~qq~~~l~~~gi~ 239 (774)
-.|..|...+..++-.++. ++.+.+|+|||..- -.+++ +-..+.+.+ .+-|.+++.....
T Consensus 9 ~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~--r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~----- 81 (438)
T KOG2543|consen 9 PCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLV--RQLLRKLNLENVWLNCVECFTYAILLEKILNKSQ----- 81 (438)
T ss_pred cchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHH--HHHHhhcCCcceeeehHHhccHHHHHHHHHHHhc-----
Confidence 3677888888888865543 88899999999642 22222 334555544 2233333333322
Q ss_pred EEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHh---cCccEEEEecccccccCCCCcHHHHHHHHHHH
Q 004098 240 ACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAES---RGIALFAIDEVHCVSKWGHDFRPDYRRLSVLR 316 (774)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~---~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~ 316 (774)
..+.+. +-+=.+.+.+.+++..+...-.. ..--++|+|-|+.+-+++...-+.+-++-.+.
T Consensus 82 ----~~d~dg------------~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~ 145 (438)
T KOG2543|consen 82 ----LADKDG------------DKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELL 145 (438)
T ss_pred ----cCCCch------------hhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHh
Confidence 011111 11111234444554444332222 23578999999999988866566666654443
Q ss_pred HHhcccccccccCCCCEEEEeccCCHHHH
Q 004098 317 ENFGANNLKSLKFDIPLMALTATATIQVR 345 (774)
Q Consensus 317 ~~~~~~~~~~l~~~~~il~lTAT~~~~~~ 345 (774)
.. ..-.+.+++++.+...
T Consensus 146 ~~-----------~~i~iils~~~~e~~y 163 (438)
T KOG2543|consen 146 NE-----------PTIVIILSAPSCEKQY 163 (438)
T ss_pred CC-----------CceEEEEeccccHHHh
Confidence 21 3446788888876543
No 420
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=87.17 E-value=1.3 Score=45.68 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=25.9
Q ss_pred EecCCCCHHHHH---HHHHHHhcCCceEEEEecccccCcccCCcceE
Q 004098 541 AYNASLPKSQLR---RVHTEFHENKLEVVVATIAFGMGIDKLNVRRI 584 (774)
Q Consensus 541 ~~h~~l~~~~R~---~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~V 584 (774)
.+..|+..-+|+ .+.+.|.-| .|=+-|.+.+.|.|...+.-|
T Consensus 253 Vd~~GLd~~D~k~L~~li~~f~Gg--PVGl~tia~~lge~~~TiEdv 297 (332)
T COG2255 253 VDELGLDEIDRKYLRALIEQFGGG--PVGLDTIAAALGEDRDTIEDV 297 (332)
T ss_pred cccccccHHHHHHHHHHHHHhCCC--CccHHHHHHHhcCchhHHHHH
Confidence 456677666654 334455544 566778888888887655433
No 421
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=86.95 E-value=2.8 Score=45.85 Aligned_cols=20 Identities=20% Similarity=0.301 Sum_probs=17.0
Q ss_pred HcCCCEEEEecCCCchHHHH
Q 004098 186 LAHHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 186 l~g~d~lv~apTGsGKTl~~ 205 (774)
-.|+-.++.+|.|.|||...
T Consensus 167 GkGQR~lIvgppGvGKTTLa 186 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLL 186 (416)
T ss_pred ccCceEEEeCCCCCChhHHH
Confidence 36899999999999999543
No 422
>PRK14701 reverse gyrase; Provisional
Probab=86.94 E-value=1.5 Score=56.87 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=54.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh------CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCG------FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~------~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a 571 (774)
.+.++||.++|+.-+.++++.|+. .++.+..+||+++.+++..+++.+++|+.+|||+|..
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 345899999999999999999886 2567889999999999999999999999999999975
No 423
>PTZ00293 thymidine kinase; Provisional
Probab=86.90 E-value=5 Score=40.08 Aligned_cols=36 Identities=19% Similarity=0.071 Sum_probs=23.8
Q ss_pred CCCEEEEecCCCchHHHHHHhh---hccCCeEEEEccch
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLI 223 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~ 223 (774)
|+=.++.+|+++|||.-.+--+ ...+.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 4445789999999995322211 23577888888853
No 424
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=86.63 E-value=2.3 Score=45.99 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=16.7
Q ss_pred CCEEEEecCCCchHHHHHHhh
Q 004098 189 HDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa 209 (774)
..+++.+|+|+|||......+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia 72 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIA 72 (328)
T ss_pred CcEEEECCCCccHHHHHHHHH
Confidence 479999999999997765433
No 425
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=86.62 E-value=1.4 Score=46.20 Aligned_cols=47 Identities=23% Similarity=0.236 Sum_probs=29.0
Q ss_pred HHHHHHH-HcCCCEEEEecCCCchHHH--HHHhhhccC-CeEEEEccchHH
Q 004098 179 KEALSAW-LAHHDCLVLAATGSGKSLC--FQIPALLTG-KVVVVISPLISL 225 (774)
Q Consensus 179 ~~ai~~i-l~g~d~lv~apTGsGKTl~--~~lpal~~~-~~~LVvsPt~~L 225 (774)
.+.+... ..+.++++++|||||||.. +++-.+-.. .++++|-...++
T Consensus 117 ~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 117 AEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred HHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 3344433 2367999999999999964 333333344 677777666554
No 426
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=86.61 E-value=1.9 Score=46.29 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=16.8
Q ss_pred CCC-EEEEecCCCchHHHHHHhh
Q 004098 188 HHD-CLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 188 g~d-~lv~apTGsGKTl~~~lpa 209 (774)
... +|+.+|.|+|||.++...+
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA 45 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALA 45 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHH
Confidence 345 8999999999998754443
No 427
>PRK05748 replicative DNA helicase; Provisional
Probab=86.60 E-value=6.5 Score=44.50 Aligned_cols=118 Identities=21% Similarity=0.178 Sum_probs=56.8
Q ss_pred HHHHHHc----CCCEEEEecCCCchHHHHHHhh----hccCCeEEEEccchHHHHHHHHHHH-hc-CCcEEEEcCCCChH
Q 004098 181 ALSAWLA----HHDCLVLAATGSGKSLCFQIPA----LLTGKVVVVISPLISLMHDQCSKLS-KH-GVTACFLGSGQPDN 250 (774)
Q Consensus 181 ai~~il~----g~d~lv~apTGsGKTl~~~lpa----l~~~~~~LVvsPt~~L~~qq~~~l~-~~-gi~~~~l~~~~~~~ 250 (774)
.+..++. |.=++|.|+||.|||...+--+ ...+..+++++. -.-..|....+- .. ++....+..+....
T Consensus 192 ~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSl-Ems~~~l~~R~l~~~~~v~~~~i~~~~l~~ 270 (448)
T PRK05748 192 DLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSL-EMGAESLVMRMLCAEGNIDAQRLRTGQLTD 270 (448)
T ss_pred HHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeC-CCCHHHHHHHHHHHhcCCCHHHhhcCCCCH
Confidence 4455443 4457778899999996543222 223556767653 223445555542 22 33322222222221
Q ss_pred HHHH------HHHcCCceEEEE-ChH-HHHHHHHHHHHHHHhc-CccEEEEeccccccc
Q 004098 251 KVEQ------KALRGMYSIIYV-CPE-TVIRLIKPLQRLAESR-GIALFAIDEVHCVSK 300 (774)
Q Consensus 251 ~~~~------~~~~~~~~Ilv~-TPe-~l~~ll~~~~~~~~~~-~i~~iVIDEaH~l~~ 300 (774)
..+. ..+.. ..+.|- +|. .+..+......+.... ++++||||=.+.+..
T Consensus 271 ~e~~~~~~a~~~l~~-~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~ 328 (448)
T PRK05748 271 DDWPKLTIAMGSLSD-APIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQG 328 (448)
T ss_pred HHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCC
Confidence 1111 11222 234442 332 1222323233333333 699999999998853
No 428
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=86.48 E-value=1.9 Score=50.84 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=53.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh-----CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec-----cccc-CcccC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCG-----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFGM-GIDKL 579 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~-----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~-----a~~~-GIDip 579 (774)
...++||.|+|+.-+.++++.+.. .++.+..+||+.+...+...+ ....+|||+|. .+.+ .+++.
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~ 148 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLS 148 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchh
Confidence 345799999999999999887764 278899999998776554443 24578999994 3333 37788
Q ss_pred CcceEE
Q 004098 580 NVRRII 585 (774)
Q Consensus 580 ~V~~VI 585 (774)
++++||
T Consensus 149 ~l~~lV 154 (629)
T PRK11634 149 KLSGLV 154 (629)
T ss_pred hceEEE
Confidence 888877
No 429
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=86.41 E-value=3 Score=44.63 Aligned_cols=95 Identities=17% Similarity=0.198 Sum_probs=54.0
Q ss_pred CCCEEEEecCCCchHH-HHHHhh--hc------cCCeEEEEccchHH-HHHHHHHHHhcCCcEEEEcCCCChHHHHHHHH
Q 004098 188 HHDCLVLAATGSGKSL-CFQIPA--LL------TGKVVVVISPLISL-MHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL 257 (774)
Q Consensus 188 g~d~lv~apTGsGKTl-~~~lpa--l~------~~~~~LVvsPt~~L-~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~ 257 (774)
|.=+.+.+|+|+|||. |.++.+ .. .++++++|.---.+ ..+..+.+.++++.. . ..+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~---------~----~~l 162 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDP---------D----AVL 162 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCCh---------H----Hhc
Confidence 4668899999999995 433332 11 25688888754433 233333344444321 1 111
Q ss_pred cCCceEEEE---ChHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 004098 258 RGMYSIIYV---CPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (774)
Q Consensus 258 ~~~~~Ilv~---TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l 298 (774)
. +|.|. +.+.+..++..+...+...++++||||=+-.+
T Consensus 163 ~---~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal 203 (313)
T TIGR02238 163 D---NILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMAL 203 (313)
T ss_pred C---cEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchHh
Confidence 1 24442 45555555554444455568999999987655
No 430
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=86.32 E-value=1.4 Score=43.39 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHc-CCCEEEEecCCCchHHHH
Q 004098 172 SSLKNFQKEALSAWLA-HHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 172 ~~~r~~Q~~ai~~il~-g~d~lv~apTGsGKTl~~ 205 (774)
..+.+.|.+.+...+. |..+++++|||+|||...
T Consensus 8 g~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 8 GTFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 3578888888888775 788999999999999653
No 431
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=86.30 E-value=1.1 Score=48.54 Aligned_cols=47 Identities=26% Similarity=0.323 Sum_probs=31.0
Q ss_pred HHHHHHH-cCCCEEEEecCCCchHHHH--HHhhhccCCeEEEEccchHHH
Q 004098 180 EALSAWL-AHHDCLVLAATGSGKSLCF--QIPALLTGKVVVVISPLISLM 226 (774)
Q Consensus 180 ~ai~~il-~g~d~lv~apTGsGKTl~~--~lpal~~~~~~LVvsPt~~L~ 226 (774)
+.+..+. .+++++|++|||||||... ++-.+-...+++.|-.+.+|.
T Consensus 153 ~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 153 AFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred HHHHHHHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCcccc
Confidence 3343333 5789999999999999642 222233455777777877764
No 432
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.27 E-value=5.3 Score=46.85 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=15.7
Q ss_pred CEEEEecCCCchHHHHHHhh
Q 004098 190 DCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa 209 (774)
..|+.+|.|+|||.+..+.+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35899999999998765443
No 433
>PHA00350 putative assembly protein
Probab=86.27 E-value=3.2 Score=45.70 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=17.1
Q ss_pred EEEEecCCCchHHHHH----HhhhccCC
Q 004098 191 CLVLAATGSGKSLCFQ----IPALLTGK 214 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~----lpal~~~~ 214 (774)
.++.+..|||||+..+ +|++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR 31 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGR 31 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCC
Confidence 4788999999998643 45555553
No 434
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.27 E-value=2.6 Score=39.69 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=21.2
Q ss_pred EEEEecCCCchHHHHHHhhhccCCeEEEEccchHHH
Q 004098 191 CLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLM 226 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~ 226 (774)
.|+.+|.|+|||..|........+ .++++.+-+++
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~~~-~~~~VN~D~iA 39 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPLLP-GIVFVNADEIA 39 (187)
T ss_pred EEEecCCCCCceeeeeccchhhcC-CeEEECHHHHh
Confidence 477889999999877543332233 34444444443
No 435
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.17 E-value=6.6 Score=45.93 Aligned_cols=19 Identities=37% Similarity=0.392 Sum_probs=15.2
Q ss_pred EEEEecCCCchHHHHHHhh
Q 004098 191 CLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpa 209 (774)
.|+.+|.|+|||.++.+.+
T Consensus 41 yLf~Gp~G~GKtt~A~~la 59 (576)
T PRK14965 41 FLFTGARGVGKTSTARILA 59 (576)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5889999999998765443
No 436
>PRK08506 replicative DNA helicase; Provisional
Probab=86.13 E-value=6.5 Score=44.75 Aligned_cols=119 Identities=17% Similarity=0.105 Sum_probs=57.5
Q ss_pred HHHHHHHc----CCCEEEEecCCCchHHHHHHhh---hccCCeEEEEccchHHHHHHHHHHHh--cCCcEEEEcCCCChH
Q 004098 180 EALSAWLA----HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSK--HGVTACFLGSGQPDN 250 (774)
Q Consensus 180 ~ai~~il~----g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~L~~qq~~~l~~--~gi~~~~l~~~~~~~ 250 (774)
..+..++. |.=+++.|.||.|||...+--+ ...+..++|++.= .=..|...++-. .+++...+..+.-..
T Consensus 180 ~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~ 258 (472)
T PRK08506 180 VELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQNLRTGDLDD 258 (472)
T ss_pred HHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHhcCCCCH
Confidence 34455543 3446778899999997543222 2345667777542 224555555533 244332232222221
Q ss_pred HHHH------HHHcCCceEEE-EChH-HHHHHHHHHHHHHHh-cCccEEEEeccccccc
Q 004098 251 KVEQ------KALRGMYSIIY-VCPE-TVIRLIKPLQRLAES-RGIALFAIDEVHCVSK 300 (774)
Q Consensus 251 ~~~~------~~~~~~~~Ilv-~TPe-~l~~ll~~~~~~~~~-~~i~~iVIDEaH~l~~ 300 (774)
..+. ..+... .+.| -+|. ++..+......+... ..+++||||=.+.|..
T Consensus 259 ~e~~~~~~a~~~l~~~-~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 259 DEWERLSDACDELSKK-KLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHHHHHHHHHHHcC-CeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 1111 112222 3333 2322 222232222332222 3689999999998864
No 437
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=85.77 E-value=4 Score=45.28 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=16.9
Q ss_pred CCEEEEecCCCchHHHHHHhh
Q 004098 189 HDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa 209 (774)
+.+++.+|+|+|||+.+-..+
T Consensus 166 ~gvLL~GppGtGKT~lAkaia 186 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVA 186 (389)
T ss_pred CceEEECCCCCChHHHHHHHH
Confidence 579999999999998754433
No 438
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=85.72 E-value=12 Score=40.46 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHc--CC---CEEEEecCCCchHHHHHH
Q 004098 175 KNFQKEALSAWLA--HH---DCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 175 r~~Q~~ai~~il~--g~---d~lv~apTGsGKTl~~~l 207 (774)
+|+|...+..+.. ++ -.|+.+|.|.|||..+..
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~ 40 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF 40 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH
Confidence 5777777777663 22 478999999999976543
No 439
>PTZ00035 Rad51 protein; Provisional
Probab=85.72 E-value=4.7 Score=43.67 Aligned_cols=102 Identities=15% Similarity=0.170 Sum_probs=53.2
Q ss_pred HHHHHHc-----CCCEEEEecCCCchHHHHH-Hhhh-c-------cCCeEEEEccchHHH-HHHHHHHHhcCCcEEEEcC
Q 004098 181 ALSAWLA-----HHDCLVLAATGSGKSLCFQ-IPAL-L-------TGKVVVVISPLISLM-HDQCSKLSKHGVTACFLGS 245 (774)
Q Consensus 181 ai~~il~-----g~d~lv~apTGsGKTl~~~-lpal-~-------~~~~~LVvsPt~~L~-~qq~~~l~~~gi~~~~l~~ 245 (774)
.+..+|. |.=+.+.+|.|+|||...+ +... . .++.+++|.---.+- ......+.++++.
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~------ 179 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLD------ 179 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCC------
Confidence 4556664 4557799999999996433 3211 1 356777776322111 1122222333321
Q ss_pred CCChHHHHHHHHcCCceEEEE---ChHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 004098 246 GQPDNKVEQKALRGMYSIIYV---CPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (774)
Q Consensus 246 ~~~~~~~~~~~~~~~~~Ilv~---TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l 298 (774)
.. ..+. +|.|. +++.+..++..+...+...++++||||=.-.+
T Consensus 180 ---~~----~~l~---nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSital 225 (337)
T PTZ00035 180 ---PE----DVLD---NIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATAL 225 (337)
T ss_pred ---hH----hHhh---ceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHHh
Confidence 11 1111 24443 34555555544444444568999999987655
No 440
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=85.70 E-value=6.9 Score=44.95 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=14.5
Q ss_pred EEEEecCCCchHHHHHHh
Q 004098 191 CLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lp 208 (774)
.|+.+|.|+|||.++..-
T Consensus 39 yLf~Gp~G~GKTt~Ar~L 56 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIF 56 (535)
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 489999999999775543
No 441
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=85.56 E-value=7.9 Score=39.54 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=16.2
Q ss_pred CCCEEEEecCCCchHHHH
Q 004098 188 HHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~ 205 (774)
-+|+|..+|+|+|||+.+
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 489999999999999865
No 442
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=85.41 E-value=4.2 Score=49.22 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=17.1
Q ss_pred CCCEEEEecCCCchHHHHHHh
Q 004098 188 HHDCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lp 208 (774)
++.+++.+|+|+|||......
T Consensus 212 ~~giLL~GppGtGKT~larai 232 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAV 232 (733)
T ss_pred CceEEEECCCCCChHHHHHHH
Confidence 578999999999999765433
No 443
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=85.35 E-value=1.3 Score=46.25 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=27.5
Q ss_pred HHHHHHHcCCCEEEEecCCCchHHHHHHhhhccCCeEEEE
Q 004098 180 EALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219 (774)
Q Consensus 180 ~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~~~~~LVv 219 (774)
.++..+..|+++++.+|+|+|||.++...+-..+...+.+
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3445556689999999999999987654443334444444
No 444
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=85.14 E-value=3.7 Score=46.92 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=36.3
Q ss_pred cCCCEEEEecCCCchHHHHH-H--hhhcc-CCeEEEEccchHHHHHHHHHHHhcCC
Q 004098 187 AHHDCLVLAATGSGKSLCFQ-I--PALLT-GKVVVVISPLISLMHDQCSKLSKHGV 238 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~-l--pal~~-~~~~LVvsPt~~L~~qq~~~l~~~gi 238 (774)
.|+-++|.+|+|+|||...+ + -.+.+ +..+|+|+- -+-..+..+.+..+|+
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~-eE~~~~l~~~~~~~G~ 74 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF-EESPQDIIKNARSFGW 74 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE-ecCHHHHHHHHHHcCC
Confidence 36789999999999996433 3 22334 668888875 4666777777877775
No 445
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=85.03 E-value=4.4 Score=43.59 Aligned_cols=95 Identities=18% Similarity=0.200 Sum_probs=49.6
Q ss_pred CCCEEEEecCCCchHH-HHHHhhh--c------cCCeEEEEccchHH-HHHHHHHHHhcCCcEEEEcCCCChHHHHHHHH
Q 004098 188 HHDCLVLAATGSGKSL-CFQIPAL--L------TGKVVVVISPLISL-MHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL 257 (774)
Q Consensus 188 g~d~lv~apTGsGKTl-~~~lpal--~------~~~~~LVvsPt~~L-~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~ 257 (774)
|.=+.+.+|+|+|||. |.++.+- . .+..+++|.---.+ ..+..+.+..+|.. .. ..+
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~---------~~----~~l 168 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLD---------PD----EVL 168 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCC---------hH----hhh
Confidence 6678899999999995 4444322 1 13477887643322 22333333333321 11 111
Q ss_pred cCCceEEEECh---HHHHHHHHHHHHHHHh-cCccEEEEeccccc
Q 004098 258 RGMYSIIYVCP---ETVIRLIKPLQRLAES-RGIALFAIDEVHCV 298 (774)
Q Consensus 258 ~~~~~Ilv~TP---e~l~~ll~~~~~~~~~-~~i~~iVIDEaH~l 298 (774)
. +|.|..+ +.+..++..+...+.. ..+++||||=.-.+
T Consensus 169 ~---~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~ 210 (317)
T PRK04301 169 D---NIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTAH 210 (317)
T ss_pred c---cEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchHH
Confidence 1 2333332 3333334444444444 67999999976655
No 446
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=84.97 E-value=1.7 Score=52.08 Aligned_cols=60 Identities=27% Similarity=0.381 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHcCCCEEEEecCCCchHHHHH--Hhhhc-----cCCeEEEEccchHHHHHHHHHHHh
Q 004098 174 LKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPALL-----TGKVVVVISPLISLMHDQCSKLSK 235 (774)
Q Consensus 174 ~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~--lpal~-----~~~~~LVvsPt~~L~~qq~~~l~~ 235 (774)
+++-|++++... ..+++|.|..|||||.+-. +.-+. ....+|+|+.|+..+.+..+.+.+
T Consensus 2 Ln~~Q~~av~~~--~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~ 68 (664)
T TIGR01074 2 LNPQQQEAVEYV--TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAK 68 (664)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 788999998753 5689999999999996532 21122 345799999999999988888865
No 447
>PRK08006 replicative DNA helicase; Provisional
Probab=84.86 E-value=14 Score=42.10 Aligned_cols=140 Identities=19% Similarity=0.187 Sum_probs=65.1
Q ss_pred CCEEEEecCCCchHHHHHHhh----hccCCeEEEEccchHHHHHHHHHHHh--cCCcEEEEcCCCChHHHHHH------H
Q 004098 189 HDCLVLAATGSGKSLCFQIPA----LLTGKVVVVISPLISLMHDQCSKLSK--HGVTACFLGSGQPDNKVEQK------A 256 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa----l~~~~~~LVvsPt~~L~~qq~~~l~~--~gi~~~~l~~~~~~~~~~~~------~ 256 (774)
.=+++.|.+|.|||...+-.+ ...+..++|++.= .=..|.+.++-. -++....+..+.-....+.+ .
T Consensus 225 ~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlE-M~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~~~ 303 (471)
T PRK08006 225 DLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLE-MPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGI 303 (471)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHH
Confidence 345667799999997544222 2235667777542 223444444433 23433333323222121111 1
Q ss_pred HcCCceEEEE-----ChHHHHHHHHHHHHHHHh-cCccEEEEecccccccCCC-CcH-HHHHHHHHHHHHhccccccccc
Q 004098 257 LRGMYSIIYV-----CPETVIRLIKPLQRLAES-RGIALFAIDEVHCVSKWGH-DFR-PDYRRLSVLRENFGANNLKSLK 328 (774)
Q Consensus 257 ~~~~~~Ilv~-----TPe~l~~ll~~~~~~~~~-~~i~~iVIDEaH~l~~~g~-~fr-~~~~~l~~l~~~~~~~~~~~l~ 328 (774)
+.....+.|- |+..+.... ..+... ..+++||||=.|.|...+. +-+ ..+..+..-.+.+..+
T Consensus 304 ~~~~~~l~I~d~~~~t~~~i~~~~---r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAke------ 374 (471)
T PRK08006 304 LLEKRNMYIDDSSGLTPTEVRSRA---RRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKE------ 374 (471)
T ss_pred HHhcCCEEEECCCCCCHHHHHHHH---HHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHH------
Confidence 1122334432 344333222 233222 3699999999998853221 112 2233333222222211
Q ss_pred CCCCEEEEec
Q 004098 329 FDIPLMALTA 338 (774)
Q Consensus 329 ~~~~il~lTA 338 (774)
.++|+++||-
T Consensus 375 l~ipVi~LsQ 384 (471)
T PRK08006 375 LQVPVVALSQ 384 (471)
T ss_pred hCCeEEEEEe
Confidence 1788888883
No 448
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.80 E-value=0.62 Score=48.35 Aligned_cols=95 Identities=23% Similarity=0.212 Sum_probs=45.6
Q ss_pred EEEEecCCCchHHH--HHHhhhccC--CeEE--------EEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHc
Q 004098 191 CLVLAATGSGKSLC--FQIPALLTG--KVVV--------VISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALR 258 (774)
Q Consensus 191 ~lv~apTGsGKTl~--~~lpal~~~--~~~L--------VvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~ 258 (774)
++|.+|||||||.+ .++-.+.+. ..+| |-...++|++|-. .|-.. .+-....+..++
T Consensus 128 ILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QRE-----vG~dT------~sF~~aLraALR 196 (353)
T COG2805 128 ILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQRE-----VGRDT------LSFANALRAALR 196 (353)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHH-----hcccH------HHHHHHHHHHhh
Confidence 67889999999964 444444432 2222 2233445554421 11110 011223445566
Q ss_pred CCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 259 GMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 259 ~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
..+||+++=- + +.++...-.+....-..+|+==-|..+
T Consensus 197 eDPDVIlvGE--m-RD~ETi~~ALtAAETGHLV~~TLHT~s 234 (353)
T COG2805 197 EDPDVILVGE--M-RDLETIRLALTAAETGHLVFGTLHTNS 234 (353)
T ss_pred cCCCEEEEec--c-ccHHHHHHHHHHHhcCCEEEEeccccc
Confidence 6777776631 1 111222222333445677777667543
No 449
>PHA02542 41 41 helicase; Provisional
Probab=84.78 E-value=7.7 Score=44.07 Aligned_cols=42 Identities=33% Similarity=0.264 Sum_probs=26.0
Q ss_pred HHHHHHHHc-----CCCEEEEecCCCchHHHHHHhh---hccCCeEEEEc
Q 004098 179 KEALSAWLA-----HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVIS 220 (774)
Q Consensus 179 ~~ai~~il~-----g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvs 220 (774)
...+..++. |.=+++.+++|.|||...+--+ ...+..+++++
T Consensus 176 ~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fS 225 (473)
T PHA02542 176 LEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYIS 225 (473)
T ss_pred cHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 445666662 2335667899999997654332 23466777775
No 450
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=84.78 E-value=1.1 Score=48.36 Aligned_cols=40 Identities=8% Similarity=0.224 Sum_probs=27.4
Q ss_pred HcCCCEEEEecCCCchHHH--HHHhhhccCCeEEEEccchHH
Q 004098 186 LAHHDCLVLAATGSGKSLC--FQIPALLTGKVVVVISPLISL 225 (774)
Q Consensus 186 l~g~d~lv~apTGsGKTl~--~~lpal~~~~~~LVvsPt~~L 225 (774)
..+++++|+++||||||.. +++-.+-...++++|=-+.+|
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El 199 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREI 199 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCcc
Confidence 3578999999999999954 333333345666666555555
No 451
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=84.59 E-value=8.8 Score=41.79 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=14.0
Q ss_pred CEEEEecCCCchHHHHH
Q 004098 190 DCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~ 206 (774)
..|+.+|.|+|||....
T Consensus 38 ~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIAR 54 (355)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999997653
No 452
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=84.59 E-value=6.9 Score=48.16 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=15.6
Q ss_pred CCEEEEecCCCchHHHHH
Q 004098 189 HDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~ 206 (774)
.+.++++|+|.|||....
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 589999999999997653
No 453
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.42 E-value=2.9 Score=47.24 Aligned_cols=90 Identities=18% Similarity=0.315 Sum_probs=70.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEe-----cccccC-cccCCc
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVAT-----IAFGMG-IDKLNV 581 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT-----~a~~~G-IDip~V 581 (774)
...+||-++||+-|..+...+.+. ++++.+++||.+...+..-++ ..+.|+||| +.+.+| +|+..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~----~gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE----RGVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh----cCCcEEEeCChHHHHHHHcCCccccce
Confidence 446999999999999999888763 566899999998877665553 347899999 466666 788889
Q ss_pred ceEE--------EeCCCCCHHHHHHHhhcccc
Q 004098 582 RRII--------HYGWPQSLEAYYQEAGRAGR 605 (774)
Q Consensus 582 ~~VI--------~~d~p~s~~~y~Qr~GRaGR 605 (774)
.++| .+++-..++..+++++|.-|
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 9888 34455567888899988877
No 454
>PRK10865 protein disaggregation chaperone; Provisional
Probab=84.41 E-value=6.6 Score=48.23 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=15.5
Q ss_pred CCEEEEecCCCchHHHHH
Q 004098 189 HDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~ 206 (774)
.+.++++|+|.|||....
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 489999999999997653
No 455
>CHL00095 clpC Clp protease ATP binding subunit
Probab=84.36 E-value=7.9 Score=47.45 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHc---CCCEEEEecCCCchHHHHHH
Q 004098 175 KNFQKEALSAWLA---HHDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 175 r~~Q~~ai~~il~---g~d~lv~apTGsGKTl~~~l 207 (774)
|.-+.+-+-.+|. ..++++++|+|.|||.....
T Consensus 184 r~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 184 REKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred cHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHH
Confidence 3334444444443 35899999999999987543
No 456
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=84.31 E-value=3.5 Score=42.59 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=17.1
Q ss_pred HcCCCEEEEecCCCchHHHH
Q 004098 186 LAHHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 186 l~g~d~lv~apTGsGKTl~~ 205 (774)
-.|+.+++.+|.|+|||...
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLl 33 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLL 33 (249)
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 36899999999999999643
No 457
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=84.29 E-value=3.8 Score=40.55 Aligned_cols=71 Identities=23% Similarity=0.284 Sum_probs=50.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc-----cccC-cccCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----FGMG-IDKLN 580 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a-----~~~G-IDip~ 580 (774)
...++||.|+++..+.+.+..+... ++.+..++|+.+..+.....+ +..+|+|+|.- +..+ .++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 3458999999999999887776553 778899999988766543332 66789999942 2222 45566
Q ss_pred cceEE
Q 004098 581 VRRII 585 (774)
Q Consensus 581 V~~VI 585 (774)
+++||
T Consensus 144 l~~lI 148 (203)
T cd00268 144 VKYLV 148 (203)
T ss_pred CCEEE
Confidence 66665
No 458
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=84.21 E-value=2.2 Score=49.59 Aligned_cols=188 Identities=15% Similarity=0.120 Sum_probs=0.0
Q ss_pred CCcccccCCCcCCCCCcccCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHc----------CCCEEEEecCCCchHH
Q 004098 134 CNLKAESDSLAVSCPKEVEIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLA----------HHDCLVLAATGSGKSL 203 (774)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~----------g~d~lv~apTGsGKTl 203 (774)
.+.+++...+..-+|+.+.....++ ......+...|.++|-.+-+ .--.|+-..-|-||-.
T Consensus 234 PD~VVEtatLSSV~ppdi~YqlalP---------~i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGR 304 (1300)
T KOG1513|consen 234 PDRVVETATLSSVEPPDITYQLALP---------SIDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGR 304 (1300)
T ss_pred CccceeeeeccccCCCCceEEEecc---------cCcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCc
Q ss_pred HHHHhhhcc----CCeEEEEccchHHHHHHHHHHHhc---CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHH----
Q 004098 204 CFQIPALLT----GKVVVVISPLISLMHDQCSKLSKH---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVI---- 272 (774)
Q Consensus 204 ~~~lpal~~----~~~~LVvsPt~~L~~qq~~~l~~~---gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~---- 272 (774)
+-.-.++.. .+++|.++=...|--|-.+.|+.. +|.+..++--....-.-..--+-+--|+++|+-.|+
T Consensus 305 TvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~DigA~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~ 384 (1300)
T KOG1513|consen 305 TVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRDIGATGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQ 384 (1300)
T ss_pred eeEEEEehhhhcccceeEEEEeccccccchhhchhhcCCCCccceehhhcccccccccccCCccceeEEEeeHhhhhhcc
Q ss_pred -------HHHHHHHHHHHhcCccEEEEeccccccc----CCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEecc
Q 004098 273 -------RLIKPLQRLAESRGIALFAIDEVHCVSK----WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTAT 339 (774)
Q Consensus 273 -------~ll~~~~~~~~~~~i~~iVIDEaH~l~~----~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT 339 (774)
.-+..+..++-..-=.+||+||||.... -|..--..=..+..|-..+| +.+++.-|||
T Consensus 385 ~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP---------~ARVVYASAT 453 (1300)
T KOG1513|consen 385 GKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP---------NARVVYASAT 453 (1300)
T ss_pred ccCchHHHHHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC---------CceEEEeecc
No 459
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=84.19 E-value=15 Score=39.20 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=14.7
Q ss_pred CEEEEecCCCchHHHHH
Q 004098 190 DCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~ 206 (774)
.+++.+|+|+|||.+..
T Consensus 40 ~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 40 HLLFAGPPGTGKTTAAL 56 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58999999999997654
No 460
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=84.15 E-value=4.3 Score=40.84 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.3
Q ss_pred CCCEEEEecCCCchHHH
Q 004098 188 HHDCLVLAATGSGKSLC 204 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~ 204 (774)
.+.++|.+|.|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 36788899999999964
No 461
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=84.09 E-value=8 Score=45.00 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=15.9
Q ss_pred CEEEEecCCCchHHHHHHhh
Q 004098 190 DCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa 209 (774)
-.|+.+|.|.|||.++.+.+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lA 59 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFA 59 (563)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999998765544
No 462
>PRK12608 transcription termination factor Rho; Provisional
Probab=83.89 E-value=5.2 Score=43.55 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=22.2
Q ss_pred HHHHHHHHH---cCCCEEEEecCCCchHHHH
Q 004098 178 QKEALSAWL---AHHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 178 Q~~ai~~il---~g~d~lv~apTGsGKTl~~ 205 (774)
-..+|..+. .|+.++|.+|.|+|||...
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl 150 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLL 150 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHH
Confidence 344676665 6889999999999999754
No 463
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=83.57 E-value=7.3 Score=38.17 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=48.0
Q ss_pred cCCCEEEEecCCCchHHHH-HHhh-hc-----------cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHH
Q 004098 187 AHHDCLVLAATGSGKSLCF-QIPA-LL-----------TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVE 253 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~-~lpa-l~-----------~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~ 253 (774)
.|.=+++.+|+|+|||... ++.+ +. .+.++|++..--. ..+..+.+....... .... .
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~~~-------~~~~-~ 101 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQDY-------DDDA-N 101 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHTTS--------HHH-H
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhccc-------CCcc-c
Confidence 3566899999999999642 2222 22 3457777766433 445556665432111 1111 1
Q ss_pred HHHHc--CCceEEEEChHH----HHHHHHHHHHHHHh-cCccEEEEecccccccCCCCcHHHH
Q 004098 254 QKALR--GMYSIIYVCPET----VIRLIKPLQRLAES-RGIALFAIDEVHCVSKWGHDFRPDY 309 (774)
Q Consensus 254 ~~~~~--~~~~Ilv~TPe~----l~~ll~~~~~~~~~-~~i~~iVIDEaH~l~~~g~~fr~~~ 309 (774)
..... +.-.+-+.++.. +...+..+...+.. .++++||||=...+..-+.+....+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~ 164 (193)
T PF13481_consen 102 LFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAV 164 (193)
T ss_dssp HHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHH
T ss_pred eEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHH
Confidence 11111 101222222211 11223333444444 5699999999998876444444443
No 464
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=83.52 E-value=3.7 Score=45.58 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=18.0
Q ss_pred CCCEEEEecCCCchHHHHHHhh
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa 209 (774)
.+.+++.+|+|+|||+..-..+
T Consensus 179 pkgvLL~GppGTGKT~LAkalA 200 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVA 200 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 5789999999999998765444
No 465
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=83.40 E-value=10 Score=41.05 Aligned_cols=16 Identities=6% Similarity=0.237 Sum_probs=13.6
Q ss_pred cCccEEEEeccccccc
Q 004098 285 RGIALFAIDEVHCVSK 300 (774)
Q Consensus 285 ~~i~~iVIDEaH~l~~ 300 (774)
...+++||||||.+..
T Consensus 109 ~~~kvviI~~a~~~~~ 124 (329)
T PRK08058 109 SNKKVYIIEHADKMTA 124 (329)
T ss_pred cCceEEEeehHhhhCH
Confidence 5678999999999963
No 466
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=83.21 E-value=0.55 Score=47.86 Aligned_cols=15 Identities=40% Similarity=0.488 Sum_probs=12.5
Q ss_pred EEEEecCCCchHHHH
Q 004098 191 CLVLAATGSGKSLCF 205 (774)
Q Consensus 191 ~lv~apTGsGKTl~~ 205 (774)
++|.++.|+|||...
T Consensus 1 ~vv~G~pGsGKSt~i 15 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI 15 (234)
T ss_pred CEEEcCCCCCHHHHH
Confidence 478999999999743
No 467
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=82.91 E-value=11 Score=43.61 Aligned_cols=99 Identities=21% Similarity=0.228 Sum_probs=57.3
Q ss_pred CCCEEEEecCCCchHHHH-HH--hhhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEE
Q 004098 188 HHDCLVLAATGSGKSLCF-QI--PALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~-~l--pal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Il 264 (774)
|.-+++.+++|+|||... ++ -++..+.++++++-. +-..+..+.+..+|+... .....+...++
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e-~~~~~i~~~~~~~g~~~~------------~~~~~g~l~i~ 339 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFE-ESRAQLIRNARSWGIDLE------------KMEEKGLLKII 339 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec-CCHHHHHHHHHHcCCChH------------HHhhcCCceee
Confidence 567888999999999643 22 234567788888654 446677777777765321 11112222333
Q ss_pred EEChHH--HHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 265 YVCPET--VIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 265 v~TPe~--l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
..-|.. +..++..+...+...+.+++|||=.--+.
T Consensus 340 ~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~ 376 (509)
T PRK09302 340 CARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALA 376 (509)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 322221 22233333444455678999999877654
No 468
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.83 E-value=1.6 Score=46.80 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHH-cCCCEEEEecCCCchHHH--HHHhhhccCCeEEEEccchHH
Q 004098 171 HSSLKNFQKEALSAWL-AHHDCLVLAATGSGKSLC--FQIPALLTGKVVVVISPLISL 225 (774)
Q Consensus 171 ~~~~r~~Q~~ai~~il-~g~d~lv~apTGsGKTl~--~~lpal~~~~~~LVvsPt~~L 225 (774)
+..+.+.|..-+..++ .+++++++++||+|||.. +++..+-...+.+.+=-|.++
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~~rivtIEdt~E~ 182 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPEERIVTIEDTPEL 182 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCchhcEEEEeccccc
Confidence 3457777776655554 578999999999999964 344444456677776666554
No 469
>PRK10263 DNA translocase FtsK; Provisional
Probab=82.75 E-value=7.8 Score=48.48 Aligned_cols=18 Identities=44% Similarity=0.538 Sum_probs=15.5
Q ss_pred CCEEEEecCCCchHHHHH
Q 004098 189 HDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~ 206 (774)
-++||.+.||+|||.+..
T Consensus 1011 PHLLIAGaTGSGKSv~Ln 1028 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVN 1028 (1355)
T ss_pred CcEEEecCCCCCHHHHHH
Confidence 589999999999998743
No 470
>PRK07004 replicative DNA helicase; Provisional
Probab=82.64 E-value=8.9 Score=43.49 Aligned_cols=140 Identities=15% Similarity=0.139 Sum_probs=65.9
Q ss_pred CCCEEEEecCCCchHHHHHHhh----hccCCeEEEEccchHHHHHHHHHHHh-c-CCcEEEEcCCCChHHHHH------H
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA----LLTGKVVVVISPLISLMHDQCSKLSK-H-GVTACFLGSGQPDNKVEQ------K 255 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa----l~~~~~~LVvsPt~~L~~qq~~~l~~-~-gi~~~~l~~~~~~~~~~~------~ 255 (774)
|.=++|.|.||.|||...+--+ +..+..+++++.= .=..|.+..+-. . ++....+..+......+. .
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlE-M~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~a~~ 291 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSME-MPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHAVQ 291 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCC-CCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 4456778899999997544222 2345667776531 113344444422 1 333322322222211111 1
Q ss_pred HHcCCceEEEE-----ChHHHHHHHHHHHHHHHh-cCccEEEEecccccccCCC--CcHHHHHHHHHHHHHhcccccccc
Q 004098 256 ALRGMYSIIYV-----CPETVIRLIKPLQRLAES-RGIALFAIDEVHCVSKWGH--DFRPDYRRLSVLRENFGANNLKSL 327 (774)
Q Consensus 256 ~~~~~~~Ilv~-----TPe~l~~ll~~~~~~~~~-~~i~~iVIDEaH~l~~~g~--~fr~~~~~l~~l~~~~~~~~~~~l 327 (774)
.+.. ..+.|. |+..+.... ..+... ..+++||||=.+.|...+. +-...+..+..-.+.+..+
T Consensus 292 ~l~~-~~l~I~d~~~~~~~~i~~~~---r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAke----- 362 (460)
T PRK07004 292 KMSE-AQLFIDETGGLNPMELRSRA---RRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKE----- 362 (460)
T ss_pred HHhc-CCEEEECCCCCCHHHHHHHH---HHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHH-----
Confidence 1222 345442 333333222 222222 3589999999998864321 1222333333332322221
Q ss_pred cCCCCEEEEec
Q 004098 328 KFDIPLMALTA 338 (774)
Q Consensus 328 ~~~~~il~lTA 338 (774)
.++|++++|-
T Consensus 363 -l~ipVi~lsQ 372 (460)
T PRK07004 363 -LDVPVIALSQ 372 (460)
T ss_pred -hCCeEEEEec
Confidence 1788888874
No 471
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.62 E-value=3.7 Score=46.87 Aligned_cols=74 Identities=22% Similarity=0.287 Sum_probs=62.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEeccc-cc------Cc-ccCCcce
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF-GM------GI-DKLNVRR 583 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~-~~------GI-Dip~V~~ 583 (774)
.+.+||.++++.-+.+....|...|+.+..++++.+..++..++.....|+.+++++|.-. .. .+ ...++.+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 5679999999999999999999999999999999999999999999999999999999632 11 12 4456677
Q ss_pred EE
Q 004098 584 II 585 (774)
Q Consensus 584 VI 585 (774)
||
T Consensus 131 iV 132 (470)
T TIGR00614 131 IA 132 (470)
T ss_pred EE
Confidence 66
No 472
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=82.59 E-value=2.8 Score=48.17 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=16.9
Q ss_pred CCEEEEecCCCchHHHHHHhh
Q 004098 189 HDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa 209 (774)
+.+|+.+|+|+|||+.....+
T Consensus 89 ~giLL~GppGtGKT~la~alA 109 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVA 109 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 579999999999998754433
No 473
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=82.59 E-value=3.5 Score=46.84 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=54.0
Q ss_pred CcEEEEeCchHHHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec-----ccc-cCcccCCc
Q 004098 513 GLTIIYVPTRKETLSIAKYLCGF-----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFG-MGIDKLNV 581 (774)
Q Consensus 513 ~~~IIF~~sr~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~-----a~~-~GIDip~V 581 (774)
..+||.|+|+.-+.++++.++.. ++++..++|+.+...+...++ +..+|+|+|. .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 36999999999999999887652 678999999998876654443 5689999993 333 35778888
Q ss_pred ceEEE
Q 004098 582 RRIIH 586 (774)
Q Consensus 582 ~~VI~ 586 (774)
++||.
T Consensus 149 ~~lVi 153 (460)
T PRK11776 149 NTLVL 153 (460)
T ss_pred CEEEE
Confidence 88873
No 474
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=82.38 E-value=1.1 Score=48.64 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=19.7
Q ss_pred CCCEEEEecCCCchHHHHHHhhhc
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALL 211 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~ 211 (774)
..|+|+.+|||+||||.++-.|-.
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ 249 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARV 249 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHH
Confidence 458999999999999988766543
No 475
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.34 E-value=12 Score=44.20 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=15.6
Q ss_pred EEEEecCCCchHHHHHHhh
Q 004098 191 CLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpa 209 (774)
.|+.+|.|.|||.++.+-+
T Consensus 42 yLf~Gp~G~GKtt~A~~lA 60 (614)
T PRK14971 42 YLFCGPRGVGKTTCARIFA 60 (614)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999998765544
No 476
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=82.26 E-value=16 Score=41.43 Aligned_cols=50 Identities=18% Similarity=0.091 Sum_probs=32.9
Q ss_pred CCCEEEEecCCCchHHHHHHhh---hccCCeEEEEccchHHHHHHHHHHHhcCC
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSKHGV 238 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~L~~qq~~~l~~~gi 238 (774)
|.=+++.+++|+|||...+-.+ ...+.++++++.- +-..|......++++
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E-Es~~qi~~ra~rlg~ 146 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE-ESLQQIKMRAIRLGL 146 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc-CCHHHHHHHHHHcCC
Confidence 5678889999999996543222 2345678888864 334566666666654
No 477
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=82.20 E-value=3.2 Score=52.43 Aligned_cols=60 Identities=18% Similarity=0.402 Sum_probs=51.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCce---EEecCCCCHHHHHHHHHHHhcCCceEEEEecc
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCGF----GVKA---AAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~~----g~~~---~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a 571 (774)
+.+++|.++|+.-+.++++.+... ++.+ ..|||+++..+|....+.+.+|..+|||+|..
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 468999999999999999888753 4443 36899999999999999999999999999974
No 478
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.09 E-value=6.7 Score=46.07 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=15.7
Q ss_pred CEEEEecCCCchHHHHHHhh
Q 004098 190 DCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa 209 (774)
=+++.+|+|+|||.++.+.+
T Consensus 112 illL~GP~GsGKTTl~~~la 131 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIKILS 131 (637)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 38889999999998764443
No 479
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.02 E-value=1.7 Score=47.53 Aligned_cols=39 Identities=26% Similarity=0.587 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHHHcCC
Q 004098 9 DEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGS 47 (774)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 47 (774)
...|.+|++|||+-+|+..|+.++=-.-+-||||+++|=
T Consensus 157 e~~I~~i~eMGf~R~qV~~ALRAafNNPdRAVEYL~tGI 195 (378)
T TIGR00601 157 ETTIEEIMEMGYEREEVERALRAAFNNPDRAVEYLLTGI 195 (378)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhCCHHHHHHHHHhCC
Confidence 679999999999999999999999888888999999993
No 480
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=81.98 E-value=6.1 Score=45.09 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHh
Q 004098 171 HSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 171 ~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lp 208 (774)
+..|-.|+.-.+.. -+-+|+.+|.|+|||..+...
T Consensus 209 i~~Pe~~~~lGv~P---prGvLlHGPPGCGKT~lA~Ai 243 (802)
T KOG0733|consen 209 IKHPEVFSSLGVRP---PRGVLLHGPPGCGKTSLANAI 243 (802)
T ss_pred hcCchhHhhcCCCC---CCceeeeCCCCccHHHHHHHH
Confidence 34455555443322 467999999999999765433
No 481
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=81.98 E-value=9.6 Score=46.75 Aligned_cols=29 Identities=10% Similarity=0.369 Sum_probs=21.6
Q ss_pred HHHHHHHHHc------CCCEEEEecCCCchHHHHH
Q 004098 178 QKEALSAWLA------HHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 178 Q~~ai~~il~------g~d~lv~apTGsGKTl~~~ 206 (774)
|.+-|..++. ..+.++++|.|.|||....
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHH
Confidence 6666666552 3589999999999997653
No 482
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=81.82 E-value=5.5 Score=44.68 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=18.5
Q ss_pred CCCEEEEecCCCchHHHHHHhhh
Q 004098 188 HHDCLVLAATGSGKSLCFQIPAL 210 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal 210 (774)
.+.+++.+|+|+|||+.+-..+-
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~ 239 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVAN 239 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999988655443
No 483
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=81.81 E-value=7.1 Score=41.76 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=52.0
Q ss_pred CCCEEEEecCCCchHHHHHHhhh---ccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEE
Q 004098 188 HHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal---~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Il 264 (774)
|+=+-+.+|+|+|||..++-.+. ..++.+++|-|-.+|-..+...+ |+. --+++
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~l---Gvd--------------------l~rll 109 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESL---GVD--------------------LDRLL 109 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHT---T----------------------GGGEE
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhc---Ccc--------------------ccceE
Confidence 56677899999999976542221 24667777777666644433332 332 11678
Q ss_pred EEChHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 004098 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (774)
Q Consensus 265 v~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l 298 (774)
|+.|+.-...+.....++....+++||||=+-.+
T Consensus 110 v~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 110 VVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp EEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-
T ss_pred EecCCcHHHHHHHHHHHhhcccccEEEEecCccc
Confidence 8877765555555566667778999999987766
No 484
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=81.67 E-value=1.9 Score=45.31 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=21.0
Q ss_pred hcCccEEEEecccccc------cCCCCcHHHHHHHHHHHHH
Q 004098 284 SRGIALFAIDEVHCVS------KWGHDFRPDYRRLSVLREN 318 (774)
Q Consensus 284 ~~~i~~iVIDEaH~l~------~~g~~fr~~~~~l~~l~~~ 318 (774)
...+-++.|||+..+. ..+..-...++-+..+..+
T Consensus 248 ~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQ 288 (423)
T KOG0744|consen 248 RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQ 288 (423)
T ss_pred CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHH
Confidence 3567889999998763 1233345555555554443
No 485
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=81.56 E-value=7 Score=46.82 Aligned_cols=89 Identities=22% Similarity=0.216 Sum_probs=57.0
Q ss_pred CCCEEEEecCCCchHHHH---HHhhhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEE
Q 004098 188 HHDCLVLAATGSGKSLCF---QIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~---~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Il 264 (774)
|.-+++.+|+|+|||... +..+...++++++|..--.+-.. .++++|+... +++
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~---~A~~lGvDl~--------------------~ll 116 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPD---YAKKLGVDTD--------------------SLL 116 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHH---HHHHcCCChh--------------------HeE
Confidence 567889999999999653 23334567888888876666533 4445554310 234
Q ss_pred EEChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 265 v~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
|..|.....++......+....+++||||-+--+.
T Consensus 117 v~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 117 VSQPDTGEQALEIADMLIRSGALDIVVIDSVAALV 151 (790)
T ss_pred EecCCCHHHHHHHHHHHhhcCCCeEEEEcchhhhc
Confidence 55554444444444445555679999999988665
No 486
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=81.51 E-value=28 Score=35.62 Aligned_cols=30 Identities=33% Similarity=0.366 Sum_probs=21.1
Q ss_pred EEEEecCCCchHHHHHHhhh---------------ccCCeEEEEc
Q 004098 191 CLVLAATGSGKSLCFQIPAL---------------LTGKVVVVIS 220 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpal---------------~~~~~~LVvs 220 (774)
.++.+|.|+|||...+-.++ ..++++|+++
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 68899999999975433222 1356788887
No 487
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=81.45 E-value=22 Score=36.43 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=17.7
Q ss_pred CCEEEEecCCCchHHHHHHhh
Q 004098 189 HDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa 209 (774)
+-+++.+|.|+|||||+-..+
T Consensus 212 kgvllygppgtgktl~arava 232 (435)
T KOG0729|consen 212 KGVLLYGPPGTGKTLCARAVA 232 (435)
T ss_pred CceEEeCCCCCchhHHHHHHh
Confidence 679999999999999975444
No 488
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=81.37 E-value=5 Score=44.64 Aligned_cols=99 Identities=17% Similarity=0.234 Sum_probs=54.2
Q ss_pred EEEEecCCCchHHHHHHhhh----c--cCCeEEEEccchH-HHH----HHHHHHHhcCCcEEEEcCCCChHHHHHHHHcC
Q 004098 191 CLVLAATGSGKSLCFQIPAL----L--TGKVVVVISPLIS-LMH----DQCSKLSKHGVTACFLGSGQPDNKVEQKALRG 259 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpal----~--~~~~~LVvsPt~~-L~~----qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~ 259 (774)
.++.+..|||||.+..+-++ . .+..++|+-|+.. |.. +....+..+|+....-....+.. -.....
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~---i~~~~~ 80 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSME---IKILNT 80 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccE---EEecCC
Confidence 57789999999976554333 3 5778899999877 433 33333445565432222221100 001121
Q ss_pred CceEEEECh-HHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 260 MYSIIYVCP-ETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 260 ~~~Ilv~TP-e~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
+..|++..- +.. .+......+.++.||||..+.
T Consensus 81 g~~i~f~g~~d~~-------~~ik~~~~~~~~~idEa~~~~ 114 (396)
T TIGR01547 81 GKKFIFKGLNDKP-------NKLKSGAGIAIIWFEEASQLT 114 (396)
T ss_pred CeEEEeecccCCh-------hHhhCcceeeeehhhhhhhcC
Confidence 345555443 211 112222346999999999985
No 489
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.30 E-value=8.2 Score=42.38 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=14.2
Q ss_pred CEEEEecCCCchHHHHH
Q 004098 190 DCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~ 206 (774)
.+++.+|.|+|||....
T Consensus 41 ~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 41 ALLFCGPRGVGKTTCAR 57 (367)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999996543
No 490
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=81.11 E-value=12 Score=42.27 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=15.8
Q ss_pred CEEEEecCCCchHHHHHHhh
Q 004098 190 DCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa 209 (774)
..|+.+|.|+|||.++.+-+
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47889999999998765443
No 491
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=80.92 E-value=3 Score=45.27 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHc-CCCEEEEecCCCchHHHHH--HhhhccCCeEEEEccchHH
Q 004098 174 LKNFQKEALSAWLA-HHDCLVLAATGSGKSLCFQ--IPALLTGKVVVVISPLISL 225 (774)
Q Consensus 174 ~r~~Q~~ai~~il~-g~d~lv~apTGsGKTl~~~--lpal~~~~~~LVvsPt~~L 225 (774)
+.+.+.+.+..+.. +.+++++++||+|||.... +-.+......+++--+.||
T Consensus 163 ~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El 217 (340)
T TIGR03819 163 FPPGVARLLRAIVAARLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAEL 217 (340)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCccee
Confidence 66778888877665 5699999999999996432 2222334566777666666
No 492
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.88 E-value=22 Score=40.65 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=15.4
Q ss_pred EEEEecCCCchHHHHHHhh
Q 004098 191 CLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpa 209 (774)
.|+.+|.|+|||.++.+-+
T Consensus 41 yLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILA 59 (486)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4679999999998776554
No 493
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=80.76 E-value=15 Score=39.30 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.1
Q ss_pred CCEEEEecCCCchHHHH
Q 004098 189 HDCLVLAATGSGKSLCF 205 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~ 205 (774)
.-.|+.+|.|.||+..+
T Consensus 27 ha~Lf~G~~G~Gk~~~A 43 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAA 43 (314)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36789999999999654
No 494
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=80.72 E-value=6.4 Score=37.33 Aligned_cols=112 Identities=19% Similarity=0.198 Sum_probs=51.9
Q ss_pred CEEEEecCCCchHHHHHHhh--hccCC--eEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChH---HHHHHHHcCCce
Q 004098 190 DCLVLAATGSGKSLCFQIPA--LLTGK--VVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYS 262 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa--l~~~~--~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~---~~~~~~~~~~~~ 262 (774)
.+++.+++|+|||...+-.+ |...+ ..=|++|-.- +.=++.|++.+-+.+|.... .-.....-+.|-
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR------~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR------EGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee------cCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 57899999999997644322 32221 2234444210 11112355555555443220 000111122233
Q ss_pred EEEEChHHHHHHH-HHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHH
Q 004098 263 IIYVCPETVIRLI-KPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312 (774)
Q Consensus 263 Ilv~TPe~l~~ll-~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l 312 (774)
|. -+-+.+.. ..+++.. ..-+++||||.--|---...|+.....+
T Consensus 81 V~---v~~le~i~~~al~rA~--~~aDvIIIDEIGpMElks~~f~~~ve~v 126 (179)
T COG1618 81 VN---VEGLEEIAIPALRRAL--EEADVIIIDEIGPMELKSKKFREAVEEV 126 (179)
T ss_pred ee---HHHHHHHhHHHHHHHh--hcCCEEEEecccchhhccHHHHHHHHHH
Confidence 33 23333222 2222222 2358999999988743333366666555
No 495
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=80.70 E-value=3.4 Score=46.92 Aligned_cols=55 Identities=27% Similarity=0.281 Sum_probs=41.3
Q ss_pred CCCEEEEecCCCchHHHHH-Hhh--h------ccCCeEEEEccchHHHHHHHHHHHhcCCcEEE
Q 004098 188 HHDCLVLAATGSGKSLCFQ-IPA--L------LTGKVVVVISPLISLMHDQCSKLSKHGVTACF 242 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~-lpa--l------~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~ 242 (774)
++-++|.+..|||||.+++ -.| + +..+.+||+.|.+-++.=+.+.|-.+|...+.
T Consensus 226 ~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLGe~~V~ 289 (747)
T COG3973 226 NKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELGEEGVV 289 (747)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhccCcee
Confidence 5668999999999997654 111 1 13456999999999998888888888765443
No 496
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=80.68 E-value=2.4 Score=50.68 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=54.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHH-----HhhhccCCeEEEEccchHHHHHHHHHHHhcCC
Q 004098 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ-----IPALLTGKVVVVISPLISLMHDQCSKLSKHGV 238 (774)
Q Consensus 170 g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~-----lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi 238 (774)
++-.++|-|.++|..-.+..++.|++|+|+|||-... +-.-....+++|++....-++|-.+.+.+..+
T Consensus 735 n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~d~ 808 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMALDV 808 (1320)
T ss_pred chhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHhccc
Confidence 3446789999999998888999999999999995432 22223578999999998888888888776543
No 497
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=80.21 E-value=2.9 Score=50.53 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHH--Hhhhc-----cCCeEEEEccchHHHHHHHHHHHhc
Q 004098 172 SSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPALL-----TGKVVVVISPLISLMHDQCSKLSKH 236 (774)
Q Consensus 172 ~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~--lpal~-----~~~~~LVvsPt~~L~~qq~~~l~~~ 236 (774)
..|+|-|++|+... ...++|.|..|||||.+.. +.-+. ....+|+++-|+..+.+..+.+.+.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 46899999999753 5689999999999996532 22222 2357999999999888888887664
No 498
>PRK09183 transposase/IS protein; Provisional
Probab=80.13 E-value=2.5 Score=44.04 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=26.7
Q ss_pred HHcCCCEEEEecCCCchHHHHHHhh---hccCCeEEEEccchHHHHH
Q 004098 185 WLAHHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHD 228 (774)
Q Consensus 185 il~g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~L~~q 228 (774)
+-++.++++.+|+|+|||......+ ...+..++++. ..+|+.+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-AADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-HHHHHHH
Confidence 4458899999999999996543322 23444555543 3344443
No 499
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=80.12 E-value=4.4 Score=47.78 Aligned_cols=61 Identities=26% Similarity=0.367 Sum_probs=43.2
Q ss_pred CCCEEEEecCCCchHHHHHHhh---hccCCeEEEEccchH--HHHHHHHHHHhcCCc--EEEEcCCCC
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLIS--LMHDQCSKLSKHGVT--ACFLGSGQP 248 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~--L~~qq~~~l~~~gi~--~~~l~~~~~ 248 (774)
..+++|+++||+|||..+.+.+ +..+..++|+=|--. |.......+++.|-. ...++-+.+
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD~~l~~~~~~~~~~~G~~dd~~~f~~~~p 243 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVIDPKGDADLKRRMRAEAKRAGRPDRFYYFHPAFP 243 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHHHHHHHHHHhCCCceEEEEecCCC
Confidence 5789999999999998763322 234667777878754 777777788887765 555554443
No 500
>CHL00195 ycf46 Ycf46; Provisional
Probab=79.97 E-value=10 Score=43.29 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=15.9
Q ss_pred CCEEEEecCCCchHHHHHH
Q 004098 189 HDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~l 207 (774)
+-+|+.+|+|+|||+.+-.
T Consensus 260 kGILL~GPpGTGKTllAka 278 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKA 278 (489)
T ss_pred ceEEEECCCCCcHHHHHHH
Confidence 5699999999999987643
Done!