Query 004098
Match_columns 774
No_of_seqs 590 out of 3621
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 14:12:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004098.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004098hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1x_A ATP-dependent DNA helic 100.0 2.2E-79 7.6E-84 708.0 43.6 472 152-768 23-511 (591)
2 1oyw_A RECQ helicase, ATP-depe 100.0 1.8E-77 6.3E-82 685.3 42.2 475 154-770 6-487 (523)
3 2db3_A ATP-dependent RNA helic 100.0 1.4E-52 4.9E-57 470.3 37.5 331 154-620 60-408 (434)
4 3i5x_A ATP-dependent RNA helic 100.0 1E-51 3.5E-56 479.7 28.6 346 156-622 78-452 (563)
5 3sqw_A ATP-dependent RNA helic 100.0 1.1E-50 3.7E-55 471.9 31.5 347 155-622 26-401 (579)
6 2i4i_A ATP-dependent RNA helic 100.0 1E-49 3.5E-54 445.1 32.2 337 154-622 19-386 (417)
7 2j0s_A ATP-dependent RNA helic 100.0 1.4E-48 4.7E-53 435.2 33.4 330 155-620 42-384 (410)
8 1xti_A Probable ATP-dependent 100.0 2.5E-48 8.4E-53 430.0 31.9 330 155-618 13-356 (391)
9 3eiq_A Eukaryotic initiation f 100.0 1E-48 3.5E-53 436.5 28.2 332 154-620 44-388 (414)
10 1s2m_A Putative ATP-dependent 100.0 3.3E-47 1.1E-51 422.5 34.0 331 154-620 25-366 (400)
11 2z0m_A 337AA long hypothetical 100.0 3.9E-47 1.3E-51 411.4 32.5 316 158-617 2-321 (337)
12 3pey_A ATP-dependent RNA helic 100.0 6E-47 2.1E-51 419.0 31.9 328 154-618 9-355 (395)
13 1hv8_A Putative ATP-dependent 100.0 2.9E-46 1E-50 409.2 36.2 326 155-620 11-346 (367)
14 3fht_A ATP-dependent RNA helic 100.0 5.6E-46 1.9E-50 413.9 34.3 327 154-618 29-378 (412)
15 1fuu_A Yeast initiation factor 100.0 7.4E-48 2.5E-52 426.5 16.0 334 155-622 26-369 (394)
16 3oiy_A Reverse gyrase helicase 100.0 8.9E-47 3E-51 421.3 24.8 320 159-616 8-362 (414)
17 4gl2_A Interferon-induced heli 100.0 1.8E-47 6.1E-52 455.6 17.9 469 173-677 7-594 (699)
18 3fmp_B ATP-dependent RNA helic 100.0 1.8E-46 6E-51 426.9 16.4 332 154-620 96-447 (479)
19 2ykg_A Probable ATP-dependent 100.0 1E-46 3.4E-51 448.9 14.6 406 168-621 8-518 (696)
20 4a4z_A Antiviral helicase SKI2 100.0 2.4E-45 8.3E-50 445.8 26.9 438 167-681 34-577 (997)
21 4a2p_A RIG-I, retinoic acid in 100.0 3.8E-43 1.3E-47 406.8 27.9 402 171-621 5-510 (556)
22 3fho_A ATP-dependent RNA helic 100.0 1.1E-44 3.9E-49 413.9 13.6 327 155-620 124-471 (508)
23 4a2w_A RIG-I, retinoic acid in 100.0 2.6E-43 8.8E-48 428.5 24.3 402 168-621 243-751 (936)
24 3tbk_A RIG-I helicase domain; 100.0 8.7E-43 3E-47 403.5 22.5 402 173-621 4-509 (555)
25 3l9o_A ATP-dependent RNA helic 100.0 3.6E-42 1.2E-46 421.4 28.4 359 166-619 178-597 (1108)
26 4a2q_A RIG-I, retinoic acid in 100.0 7.2E-42 2.5E-46 411.5 29.2 405 168-621 243-751 (797)
27 4ddu_A Reverse gyrase; topoiso 100.0 8.4E-42 2.9E-46 418.0 28.3 292 160-591 66-388 (1104)
28 2p6r_A Afuhel308 helicase; pro 100.0 9.2E-42 3.2E-46 405.4 27.9 335 157-620 10-389 (702)
29 2zj8_A DNA helicase, putative 100.0 1.8E-41 6E-46 404.1 28.2 332 155-620 6-388 (720)
30 2va8_A SSO2462, SKI2-type heli 100.0 2E-40 6.7E-45 395.2 34.0 339 155-620 13-409 (715)
31 1wp9_A ATP-dependent RNA helic 100.0 1.2E-40 4E-45 378.2 30.6 391 173-622 9-478 (494)
32 2xgj_A ATP-dependent RNA helic 100.0 1.1E-40 3.7E-45 405.0 31.4 357 167-619 81-499 (1010)
33 1tf5_A Preprotein translocase 100.0 1.2E-39 4.1E-44 376.0 31.7 371 164-621 75-547 (844)
34 1gku_B Reverse gyrase, TOP-RG; 100.0 1.5E-40 5E-45 407.5 19.0 285 160-590 45-352 (1054)
35 1gm5_A RECG; helicase, replica 100.0 4.5E-39 1.5E-43 379.1 21.5 310 160-617 356-695 (780)
36 4f92_B U5 small nuclear ribonu 100.0 5.9E-38 2E-42 396.7 29.6 329 170-620 923-1309(1724)
37 4f92_B U5 small nuclear ribonu 100.0 1.5E-38 5.2E-43 402.1 24.0 330 170-622 76-476 (1724)
38 2eyq_A TRCF, transcription-rep 100.0 1.3E-37 4.3E-42 383.6 30.0 312 160-619 591-922 (1151)
39 2fsf_A Preprotein translocase 100.0 3.6E-37 1.2E-41 354.3 29.6 374 163-620 65-584 (853)
40 2fwr_A DNA repair protein RAD2 100.0 6.7E-39 2.3E-43 363.8 15.0 345 173-615 93-448 (472)
41 2oca_A DAR protein, ATP-depend 100.0 5.4E-38 1.8E-42 359.9 21.1 323 173-618 113-454 (510)
42 1nkt_A Preprotein translocase 100.0 9.4E-37 3.2E-41 350.9 27.8 376 161-620 100-618 (922)
43 2jlq_A Serine protease subunit 100.0 2.2E-37 7.4E-42 348.1 19.5 283 170-617 1-309 (451)
44 3o8b_A HCV NS3 protease/helica 100.0 2.5E-37 8.6E-42 354.5 13.7 280 173-623 217-518 (666)
45 2wv9_A Flavivirin protease NS2 100.0 9.7E-38 3.3E-42 363.6 10.0 275 173-617 215-531 (673)
46 1yks_A Genome polyprotein [con 100.0 3E-37 1E-41 345.3 12.6 262 184-617 4-297 (440)
47 2whx_A Serine protease/ntpase/ 100.0 8.8E-37 3E-41 353.4 16.3 282 171-617 169-476 (618)
48 2xau_A PRE-mRNA-splicing facto 100.0 4.7E-35 1.6E-39 347.2 21.6 325 154-621 76-445 (773)
49 3dmq_A RNA polymerase-associat 100.0 5E-35 1.7E-39 356.1 21.5 396 173-616 153-610 (968)
50 2z83_A Helicase/nucleoside tri 100.0 1.1E-35 3.7E-40 334.8 14.2 269 182-619 15-313 (459)
51 3h1t_A Type I site-specific re 100.0 1.4E-34 4.8E-39 337.2 23.7 337 173-618 178-557 (590)
52 2v6i_A RNA helicase; membrane, 100.0 3.1E-34 1.1E-38 320.3 22.1 267 187-617 1-288 (431)
53 3rc3_A ATP-dependent RNA helic 100.0 3.1E-34 1.1E-38 333.0 22.5 281 177-617 144-443 (677)
54 1z63_A Helicase of the SNF2/RA 100.0 4.3E-33 1.5E-37 318.3 21.5 355 173-615 37-447 (500)
55 3mwy_W Chromo domain-containin 100.0 5.8E-33 2E-37 333.1 15.5 405 172-615 235-678 (800)
56 1z3i_X Similar to RAD54-like; 100.0 1.6E-30 5.3E-35 304.5 28.2 105 511-615 415-522 (644)
57 3jux_A Protein translocase sub 100.0 1.7E-28 5.9E-33 276.4 31.8 122 497-620 458-588 (822)
58 3fe2_A Probable ATP-dependent 100.0 4E-29 1.4E-33 257.4 20.2 183 154-353 33-230 (242)
59 3iuy_A Probable ATP-dependent 100.0 5E-29 1.7E-33 254.2 16.9 182 155-353 25-221 (228)
60 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 3.5E-28 1.2E-32 293.6 27.1 348 159-617 251-707 (1038)
61 1q0u_A Bstdead; DEAD protein, 100.0 1.4E-28 4.8E-33 249.2 15.0 194 155-368 9-216 (219)
62 3ly5_A ATP-dependent RNA helic 100.0 3.1E-28 1.1E-32 253.6 17.7 182 156-353 60-255 (262)
63 1vec_A ATP-dependent RNA helic 100.0 1.1E-27 3.6E-32 240.2 18.9 182 155-353 8-200 (206)
64 3bor_A Human initiation factor 100.0 4.9E-28 1.7E-32 248.4 16.1 183 155-353 35-227 (237)
65 3ber_A Probable ATP-dependent 100.0 1.9E-27 6.5E-32 245.7 20.4 183 155-353 48-240 (249)
66 1c4o_A DNA nucleotide excision 100.0 1.4E-26 4.8E-31 270.7 29.2 108 511-619 438-550 (664)
67 1t6n_A Probable ATP-dependent 99.9 1.3E-27 4.4E-32 242.3 17.1 183 154-352 18-212 (220)
68 2oxc_A Probable ATP-dependent 99.9 1.6E-27 5.6E-32 243.3 17.0 181 155-352 29-220 (230)
69 2pl3_A Probable ATP-dependent 99.9 3.1E-27 1E-31 242.3 18.8 182 154-352 29-224 (236)
70 1wrb_A DJVLGB; RNA helicase, D 99.9 9.4E-28 3.2E-32 248.8 15.1 183 156-353 29-232 (253)
71 2gxq_A Heat resistant RNA depe 99.9 7.5E-27 2.6E-31 234.1 20.0 182 155-353 6-198 (207)
72 1qde_A EIF4A, translation init 99.9 4.5E-27 1.5E-31 238.9 16.7 181 155-353 19-209 (224)
73 3dkp_A Probable ATP-dependent 99.9 6.7E-28 2.3E-32 248.7 9.0 187 156-353 35-233 (245)
74 3fmo_B ATP-dependent RNA helic 99.9 9E-27 3.1E-31 247.1 16.8 181 154-353 96-290 (300)
75 2d7d_A Uvrabc system protein B 99.9 9.6E-25 3.3E-29 255.1 30.1 108 511-619 444-556 (661)
76 2ipc_A Preprotein translocase 99.9 1.4E-23 4.7E-28 240.8 32.1 152 161-320 68-247 (997)
77 3eaq_A Heat resistant RNA depe 99.9 1.4E-24 4.9E-29 218.2 14.4 124 496-620 16-139 (212)
78 2hjv_A ATP-dependent RNA helic 99.9 1.6E-24 5.3E-29 208.7 13.7 125 494-619 18-142 (163)
79 1t5i_A C_terminal domain of A 99.9 2.3E-24 8E-29 209.3 13.5 123 495-618 15-137 (172)
80 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.5E-24 5.1E-29 213.2 11.8 128 494-621 28-155 (185)
81 2p6n_A ATP-dependent RNA helic 99.9 5.2E-24 1.8E-28 210.2 13.6 124 494-619 38-161 (191)
82 2rb4_A ATP-dependent RNA helic 99.9 7.2E-24 2.5E-28 206.6 13.2 122 498-620 21-148 (175)
83 1fuk_A Eukaryotic initiation f 99.9 7.3E-24 2.5E-28 204.5 11.8 122 498-620 17-138 (165)
84 3i32_A Heat resistant RNA depe 99.9 2.4E-23 8.1E-28 219.4 13.1 124 496-620 13-136 (300)
85 2vl7_A XPD; helicase, unknown 99.9 9.5E-22 3.2E-26 225.4 20.3 129 168-299 3-188 (540)
86 2yjt_D ATP-dependent RNA helic 99.8 3.6E-24 1.2E-28 207.7 0.0 125 497-622 16-140 (170)
87 3b6e_A Interferon-induced heli 99.8 2.6E-21 8.9E-26 194.8 11.5 168 170-339 30-216 (216)
88 3crv_A XPD/RAD3 related DNA he 99.8 7.1E-18 2.4E-22 193.9 30.7 128 170-300 1-187 (551)
89 2fz4_A DNA repair protein RAD2 99.8 4.7E-19 1.6E-23 181.1 15.8 138 173-343 93-231 (237)
90 1rif_A DAR protein, DNA helica 99.8 1.5E-19 5.1E-24 190.2 11.0 145 173-343 113-265 (282)
91 1z5z_A Helicase of the SNF2/RA 99.7 1.3E-18 4.5E-23 180.9 7.7 121 495-615 94-218 (271)
92 3llm_A ATP-dependent RNA helic 99.7 3.6E-17 1.2E-21 167.0 15.8 148 173-344 61-222 (235)
93 4a15_A XPD helicase, ATP-depen 99.7 9.5E-16 3.3E-20 177.6 23.8 102 512-617 448-582 (620)
94 3aaf_A Werner syndrome ATP-dep 98.9 1.1E-09 3.8E-14 99.9 4.9 80 682-770 8-88 (134)
95 1w36_D RECD, exodeoxyribonucle 98.3 1.9E-06 6.4E-11 99.6 10.9 78 158-235 134-218 (608)
96 3hgt_A HDA1 complex subunit 3; 98.2 2.2E-06 7.5E-11 89.2 7.6 138 465-607 73-221 (328)
97 4b3f_X DNA-binding protein smu 97.8 2.3E-05 7.9E-10 91.4 7.2 74 172-245 188-265 (646)
98 2gk6_A Regulator of nonsense t 97.7 6.9E-05 2.4E-09 86.9 10.3 74 171-244 178-255 (624)
99 2xzl_A ATP-dependent helicase 97.5 0.00012 4.3E-09 86.8 8.4 74 171-244 358-435 (802)
100 2wjy_A Regulator of nonsense t 97.5 0.00013 4.5E-09 86.4 8.2 74 171-244 354-431 (800)
101 3e1s_A Exodeoxyribonuclease V, 97.2 0.00039 1.3E-08 79.5 7.6 61 173-233 189-252 (574)
102 3upu_A ATP-dependent DNA helic 97.0 0.00047 1.6E-08 76.8 5.7 66 168-233 20-94 (459)
103 2o0j_A Terminase, DNA packagin 96.5 0.05 1.7E-06 58.4 16.5 63 173-235 163-230 (385)
104 1wji_A Tudor domain containing 96.5 0.0043 1.5E-07 47.9 5.5 42 8-49 9-50 (63)
105 1vg5_A RSGI RUH-014, rhomboid 96.4 0.0063 2.1E-07 48.3 6.1 44 6-49 27-70 (73)
106 3ec2_A DNA replication protein 96.1 0.038 1.3E-06 52.5 11.2 32 175-206 16-56 (180)
107 1wiv_A UBP14, ubiquitin-specif 95.9 0.015 5.1E-07 46.3 6.1 42 8-49 29-70 (73)
108 3co5_A Putative two-component 95.9 0.084 2.9E-06 48.1 12.3 22 186-207 25-46 (143)
109 1ify_A HHR23A, UV excision rep 95.8 0.01 3.5E-07 43.3 4.5 39 8-46 8-46 (49)
110 3cpe_A Terminase, DNA packagin 95.7 0.14 4.9E-06 58.6 16.0 63 173-235 163-230 (592)
111 2g3q_A Protein YBL047C; endocy 95.7 0.015 5.1E-07 41.1 4.8 39 8-46 4-42 (43)
112 1wgn_A UBAP1, ubiquitin associ 95.4 0.014 4.7E-07 43.7 3.9 42 7-48 18-59 (63)
113 2dr3_A UPF0273 protein PH0284; 95.4 0.25 8.4E-06 49.1 14.8 51 187-238 22-75 (247)
114 2ekk_A UBA domain from E3 ubiq 95.3 0.027 9.3E-07 40.6 5.0 40 6-46 7-46 (47)
115 2zpa_A Uncharacterized protein 95.1 0.062 2.1E-06 61.5 9.9 114 173-342 175-290 (671)
116 2dag_A Ubiquitin carboxyl-term 95.0 0.054 1.8E-06 43.2 6.6 42 8-49 9-51 (74)
117 2kjq_A DNAA-related protein; s 95.0 0.078 2.7E-06 48.8 8.8 19 187-205 35-53 (149)
118 3vkw_A Replicase large subunit 95.0 0.025 8.5E-07 61.6 6.0 84 190-298 163-246 (446)
119 4a1f_A DNAB helicase, replicat 94.9 0.24 8.3E-06 52.1 13.4 139 188-338 46-204 (338)
120 3te6_A Regulatory protein SIR3 94.6 0.087 3E-06 55.0 8.9 18 188-205 45-62 (318)
121 2cos_A Serine/threonine protei 94.5 0.061 2.1E-06 39.0 5.1 43 5-48 7-50 (54)
122 3vfd_A Spastin; ATPase, microt 94.5 0.24 8.3E-06 53.3 12.7 32 188-219 148-179 (389)
123 3eie_A Vacuolar protein sortin 94.5 0.17 5.9E-06 53.0 11.0 32 188-219 51-82 (322)
124 2jy5_A Ubiquilin-1; UBA, alter 94.4 0.056 1.9E-06 39.9 4.9 38 9-46 13-51 (52)
125 1xp8_A RECA protein, recombina 94.3 0.27 9.2E-06 52.5 12.2 89 188-299 74-165 (366)
126 2bwb_A Ubiquitin-like protein 94.3 0.068 2.3E-06 38.2 5.1 38 9-46 8-46 (46)
127 2p65_A Hypothetical protein PF 94.3 0.47 1.6E-05 44.4 12.8 18 188-205 43-60 (187)
128 2knz_A Ubiquilin-4; cytoplasm, 94.3 0.059 2E-06 39.9 4.8 39 9-47 12-51 (53)
129 2z43_A DNA repair and recombin 94.3 0.28 9.5E-06 51.5 12.1 103 181-299 95-216 (324)
130 1n0w_A DNA repair protein RAD5 94.3 0.49 1.7E-05 46.8 13.4 97 188-300 24-133 (243)
131 2cpw_A CBL-interacting protein 94.2 0.045 1.5E-06 42.3 4.2 40 9-48 20-60 (64)
132 1vej_A Riken cDNA 4931431F19; 94.2 0.079 2.7E-06 42.0 5.6 41 9-49 30-71 (74)
133 2chg_A Replication factor C sm 94.1 0.32 1.1E-05 47.0 11.5 17 189-205 39-55 (226)
134 1v5w_A DMC1, meiotic recombina 94.1 0.29 1E-05 51.8 11.9 103 181-299 110-232 (343)
135 1veg_A NEDD8 ultimate buster-1 94.0 0.088 3E-06 42.7 5.7 39 8-46 29-67 (83)
136 2dak_A Ubiquitin carboxyl-term 94.0 0.044 1.5E-06 42.3 3.7 41 8-48 9-49 (63)
137 2orw_A Thymidine kinase; TMTK, 94.0 0.09 3.1E-06 50.3 6.8 36 188-223 3-41 (184)
138 2zr9_A Protein RECA, recombina 93.8 0.54 1.8E-05 49.8 13.2 89 188-299 61-152 (349)
139 1l8q_A Chromosomal replication 93.8 0.18 6E-06 52.9 9.4 19 188-206 37-55 (324)
140 2q6t_A DNAB replication FORK h 93.8 0.69 2.4E-05 50.8 14.5 117 181-300 189-324 (444)
141 3syl_A Protein CBBX; photosynt 93.8 0.34 1.2E-05 50.1 11.5 18 189-206 68-85 (309)
142 1u94_A RECA protein, recombina 93.8 0.34 1.2E-05 51.4 11.6 89 188-299 63-154 (356)
143 1a5t_A Delta prime, HOLB; zinc 93.7 0.17 5.8E-06 53.4 9.1 34 174-207 3-43 (334)
144 3n70_A Transport activator; si 93.6 0.22 7.7E-06 45.3 8.7 22 187-208 23-44 (145)
145 2r6a_A DNAB helicase, replicat 93.6 0.68 2.3E-05 51.0 14.1 118 181-300 192-327 (454)
146 2dah_A Ubiquilin-3; UBA domain 93.6 0.094 3.2E-06 38.9 4.8 41 9-49 10-51 (54)
147 2dai_A Ubadc1, ubiquitin assoc 93.6 0.099 3.4E-06 42.6 5.3 42 8-49 29-70 (83)
148 1z96_A DNA-damage, UBA-domain 93.6 0.1 3.5E-06 36.0 4.7 37 8-44 4-40 (40)
149 3h4m_A Proteasome-activating n 93.5 0.19 6.6E-06 51.3 9.0 22 188-209 51-72 (285)
150 1jbk_A CLPB protein; beta barr 93.5 1.2 4E-05 41.7 14.0 18 188-205 43-60 (195)
151 2crn_A Ubash3A protein; compac 93.4 0.13 4.4E-06 39.7 5.5 41 9-49 10-51 (64)
152 3lfu_A DNA helicase II; SF1 he 93.4 0.089 3E-06 61.0 6.8 63 172-236 8-77 (647)
153 3bos_A Putative DNA replicatio 93.3 0.084 2.9E-06 52.2 5.6 18 188-205 52-69 (242)
154 1d2n_A N-ethylmaleimide-sensit 93.3 0.2 6.8E-06 51.0 8.6 21 189-209 65-85 (272)
155 2b8t_A Thymidine kinase; deoxy 93.2 0.11 3.8E-06 51.2 6.2 36 188-223 12-50 (223)
156 1fnn_A CDC6P, cell division co 93.2 0.37 1.3E-05 51.5 11.0 17 190-206 46-62 (389)
157 3dm5_A SRP54, signal recogniti 93.1 1.9 6.4E-05 47.0 16.2 122 190-346 102-230 (443)
158 2cvh_A DNA repair and recombin 93.1 0.16 5.6E-06 49.5 7.3 34 188-221 20-53 (220)
159 2v1u_A Cell division control p 93.1 0.23 7.8E-06 53.0 9.0 19 188-206 44-62 (387)
160 1xx6_A Thymidine kinase; NESG, 93.1 0.23 7.7E-06 47.8 8.0 36 188-223 8-46 (191)
161 1gm5_A RECG; helicase, replica 92.9 0.21 7E-06 58.9 8.8 76 512-587 417-497 (780)
162 3d8b_A Fidgetin-like protein 1 92.9 0.25 8.5E-06 52.6 8.9 32 188-219 117-148 (357)
163 1wr1_B Ubiquitin-like protein 92.8 0.15 5.2E-06 38.4 4.9 39 9-47 18-57 (58)
164 3bh0_A DNAB-like replicative h 92.8 1 3.6E-05 46.8 13.4 111 188-300 68-195 (315)
165 1whc_A RSGI RUH-027, UBA/UBX 3 92.8 0.056 1.9E-06 41.8 2.6 41 9-49 10-51 (64)
166 3oiy_A Reverse gyrase helicase 92.7 0.26 8.8E-06 53.5 8.9 76 511-586 63-145 (414)
167 2qby_A CDC6 homolog 1, cell di 92.7 0.31 1.1E-05 51.9 9.5 19 188-206 45-63 (386)
168 2qp9_X Vacuolar protein sortin 92.6 0.31 1.1E-05 51.8 9.0 32 188-219 84-115 (355)
169 2w58_A DNAI, primosome compone 92.6 0.76 2.6E-05 44.1 11.2 18 189-206 55-72 (202)
170 2dna_A Unnamed protein product 92.6 0.22 7.7E-06 38.4 5.6 42 10-51 21-63 (67)
171 2w0m_A SSO2452; RECA, SSPF, un 92.4 1.8 6.1E-05 42.1 13.9 34 188-221 23-59 (235)
172 2z4s_A Chromosomal replication 92.3 0.98 3.3E-05 49.5 12.8 19 189-207 131-149 (440)
173 4b4t_J 26S protease regulatory 92.2 0.51 1.7E-05 50.7 10.1 32 188-219 182-213 (405)
174 1xwi_A SKD1 protein; VPS4B, AA 92.2 0.38 1.3E-05 50.4 9.0 21 189-209 46-66 (322)
175 2qby_B CDC6 homolog 3, cell di 91.9 0.4 1.4E-05 51.2 9.1 19 188-206 45-63 (384)
176 1njg_A DNA polymerase III subu 91.8 0.27 9.4E-06 48.2 7.1 16 190-205 47-62 (250)
177 3bgw_A DNAB-like replicative h 91.6 1.8 6.3E-05 47.3 14.0 147 181-339 186-359 (444)
178 3kl4_A SRP54, signal recogniti 91.5 1.6 5.5E-05 47.4 13.2 125 190-346 99-229 (433)
179 2qz4_A Paraplegin; AAA+, SPG7, 91.4 0.43 1.5E-05 47.9 8.2 21 188-208 39-59 (262)
180 1sxj_A Activator 1 95 kDa subu 91.4 0.35 1.2E-05 54.2 8.1 31 189-219 78-108 (516)
181 3u61_B DNA polymerase accessor 91.4 0.63 2.1E-05 48.5 9.6 14 286-299 105-118 (324)
182 1g5t_A COB(I)alamin adenosyltr 91.3 0.75 2.6E-05 44.1 9.1 100 188-303 28-137 (196)
183 3pvs_A Replication-associated 91.3 0.36 1.2E-05 53.0 7.9 21 189-209 51-71 (447)
184 2dkl_A Trinucleotide repeat co 91.2 0.29 9.9E-06 40.0 5.2 41 9-49 22-62 (85)
185 3b9p_A CG5977-PA, isoform A; A 91.2 0.59 2E-05 48.0 9.2 22 188-209 54-75 (297)
186 2i1q_A DNA repair and recombin 91.2 0.8 2.8E-05 47.7 10.2 96 188-299 98-217 (322)
187 2ehv_A Hypothetical protein PH 91.2 0.78 2.7E-05 45.5 9.7 34 187-220 29-66 (251)
188 1vek_A UBP14, ubiquitin-specif 91.0 0.37 1.3E-05 39.3 5.7 42 8-49 29-71 (84)
189 2zts_A Putative uncharacterize 90.7 2.4 8.3E-05 41.7 12.9 136 188-339 30-181 (251)
190 3t15_A Ribulose bisphosphate c 90.6 0.52 1.8E-05 48.6 7.9 21 189-209 37-57 (293)
191 3pfi_A Holliday junction ATP-d 90.6 1.5 5.2E-05 45.8 11.8 20 189-208 56-75 (338)
192 4b4t_M 26S protease regulatory 90.4 0.56 1.9E-05 51.0 8.3 32 188-219 215-246 (434)
193 1w5s_A Origin recognition comp 90.3 2.6 8.9E-05 45.1 13.7 17 189-205 51-69 (412)
194 1pjr_A PCRA; DNA repair, DNA r 90.3 0.35 1.2E-05 56.8 7.0 62 172-235 10-78 (724)
195 2bjv_A PSP operon transcriptio 90.1 1 3.6E-05 45.2 9.7 23 187-209 28-50 (265)
196 2cp8_A NEXT to BRCA1 gene 1 pr 90.0 0.27 9.4E-06 36.1 3.6 41 9-49 10-51 (54)
197 4b4t_L 26S protease subunit RP 90.0 0.9 3.1E-05 49.4 9.4 30 188-217 215-244 (437)
198 2qgz_A Helicase loader, putati 90.0 1.5 5.2E-05 45.4 10.9 19 188-206 152-170 (308)
199 4ddu_A Reverse gyrase; topoiso 89.9 0.56 1.9E-05 57.5 8.6 75 511-586 120-202 (1104)
200 3hr8_A Protein RECA; alpha and 89.7 1.2 4E-05 47.2 9.8 89 188-299 61-152 (356)
201 1sxj_D Activator 1 41 kDa subu 89.7 2 6.8E-05 45.0 11.8 17 189-205 59-75 (353)
202 1uaa_A REP helicase, protein ( 89.6 0.28 9.4E-06 57.1 5.4 62 173-236 2-70 (673)
203 3uk6_A RUVB-like 2; hexameric 89.5 0.88 3E-05 48.2 9.0 22 188-209 70-91 (368)
204 3cf0_A Transitional endoplasmi 89.5 1.1 3.8E-05 46.2 9.4 32 188-219 49-80 (301)
205 1sxj_B Activator 1 37 kDa subu 89.4 0.88 3E-05 47.0 8.7 16 190-205 44-59 (323)
206 3hu3_A Transitional endoplasmi 89.4 1.7 5.9E-05 48.1 11.3 31 188-218 238-268 (489)
207 3cmw_A Protein RECA, recombina 89.3 2 6.7E-05 54.5 12.9 96 181-299 719-823 (1706)
208 2orv_A Thymidine kinase; TP4A 89.3 0.48 1.6E-05 46.7 5.9 37 188-224 19-58 (234)
209 4b4t_I 26S protease regulatory 89.1 1.2 4E-05 48.2 9.3 26 188-213 216-241 (437)
210 2gno_A DNA polymerase III, gam 89.0 0.68 2.3E-05 48.0 7.3 18 190-207 20-37 (305)
211 3u4q_A ATP-dependent helicase/ 89.0 0.46 1.6E-05 59.2 7.1 61 173-235 10-79 (1232)
212 1q57_A DNA primase/helicase; d 88.9 3.2 0.00011 46.1 13.4 110 188-299 242-367 (503)
213 3lda_A DNA repair protein RAD5 88.7 4.5 0.00015 43.5 13.8 104 181-300 166-287 (400)
214 3e2i_A Thymidine kinase; Zn-bi 88.7 0.6 2E-05 45.5 6.1 37 188-224 28-67 (219)
215 3cmu_A Protein RECA, recombina 88.5 0.4 1.4E-05 61.5 6.0 96 181-299 1414-1518(2050)
216 4b4t_H 26S protease regulatory 88.5 1.3 4.6E-05 48.2 9.4 23 188-210 243-265 (467)
217 2zan_A Vacuolar protein sortin 88.4 0.66 2.3E-05 50.9 7.1 33 188-220 167-200 (444)
218 1t6n_A Probable ATP-dependent 88.3 2 6.7E-05 41.7 9.9 72 512-586 82-164 (220)
219 2rb4_A ATP-dependent RNA helic 88.0 1.4 4.9E-05 41.2 8.3 73 212-292 33-108 (175)
220 1iqp_A RFCS; clamp loader, ext 87.9 1 3.5E-05 46.6 8.0 17 190-206 48-64 (327)
221 2cwb_A Chimera of immunoglobul 87.9 0.6 2.1E-05 39.8 4.8 39 9-47 67-106 (108)
222 4ae4_A Ubiquitin-associated pr 87.8 0.44 1.5E-05 41.6 4.1 38 10-47 78-115 (118)
223 2j9r_A Thymidine kinase; TK1, 87.5 1.3 4.3E-05 43.2 7.6 37 188-224 28-67 (214)
224 2hjv_A ATP-dependent RNA helic 87.4 1.5 5.1E-05 40.5 7.9 73 212-292 34-109 (163)
225 2iut_A DNA translocase FTSK; n 87.3 0.75 2.6E-05 51.6 6.7 18 188-205 214-231 (574)
226 4b4t_K 26S protease regulatory 87.3 1.5 5E-05 47.6 8.8 22 188-209 206-227 (428)
227 1cr0_A DNA primase/helicase; R 87.0 7 0.00024 39.8 13.7 35 187-221 34-72 (296)
228 1vma_A Cell division protein F 87.0 9.2 0.00031 39.4 14.4 78 157-240 79-162 (306)
229 3cmu_A Protein RECA, recombina 86.9 3.4 0.00012 53.2 12.9 97 180-299 369-474 (2050)
230 1jr3_A DNA polymerase III subu 86.8 0.59 2E-05 49.6 5.3 17 190-206 40-56 (373)
231 2qen_A Walker-type ATPase; unk 86.7 7.9 0.00027 40.0 14.1 31 175-205 17-48 (350)
232 1pzn_A RAD51, DNA repair and r 86.5 4.6 0.00016 42.5 12.0 104 181-300 119-245 (349)
233 3io5_A Recombination and repai 86.0 1.6 5.6E-05 45.1 7.9 87 190-299 30-124 (333)
234 2oxc_A Probable ATP-dependent 86.0 2.1 7E-05 42.0 8.5 70 511-585 91-171 (230)
235 1nlf_A Regulatory protein REPA 85.9 3.1 0.00011 42.1 10.1 22 185-206 27-48 (279)
236 3hjh_A Transcription-repair-co 85.8 2.5 8.7E-05 46.6 9.9 85 188-273 14-115 (483)
237 2p6n_A ATP-dependent RNA helic 85.8 3.7 0.00013 39.1 9.9 85 199-292 40-128 (191)
238 2lbc_A Ubiquitin carboxyl-term 85.7 0.89 3E-05 40.3 5.0 42 7-48 77-118 (126)
239 1t5i_A C_terminal domain of A 85.7 2 6.9E-05 40.1 7.9 73 212-292 30-105 (172)
240 2eyq_A TRCF, transcription-rep 85.2 1.4 4.6E-05 54.5 8.1 75 511-585 651-730 (1151)
241 1fuk_A Eukaryotic initiation f 85.1 1.9 6.4E-05 39.9 7.3 73 212-292 29-104 (165)
242 2jgn_A DBX, DDX3, ATP-dependen 85.0 1.8 6.3E-05 41.0 7.3 73 212-292 45-120 (185)
243 2px0_A Flagellar biosynthesis 85.0 10 0.00035 38.8 13.5 46 188-233 105-156 (296)
244 1dv0_A DNA repair protein HHR2 84.9 0.33 1.1E-05 34.8 1.4 40 9-48 5-44 (47)
245 1ojl_A Transcriptional regulat 84.8 1.4 4.6E-05 45.7 6.8 21 188-208 25-45 (304)
246 3eaq_A Heat resistant RNA depe 84.7 3 0.0001 40.4 8.9 73 211-291 29-104 (212)
247 2ooa_A E3 ubiquitin-protein li 84.6 1.5 5.2E-05 31.6 4.7 30 9-38 12-41 (52)
248 2vhj_A Ntpase P4, P4; non- hyd 84.3 1.2 4.2E-05 46.1 6.0 20 187-206 122-141 (331)
249 3ber_A Probable ATP-dependent 84.1 3 0.0001 41.5 8.8 72 511-586 110-192 (249)
250 4a74_A DNA repair and recombin 84.0 7.9 0.00027 37.3 11.8 19 188-206 25-43 (231)
251 1oyw_A RECQ helicase, ATP-depe 83.8 2 6.9E-05 48.1 8.1 59 512-570 65-123 (523)
252 2v1x_A ATP-dependent DNA helic 83.7 1.8 6.1E-05 49.3 7.7 59 512-570 84-144 (591)
253 3cmw_A Protein RECA, recombina 83.5 7.3 0.00025 49.5 13.5 97 180-299 369-474 (1706)
254 1xti_A Probable ATP-dependent 82.8 3.9 0.00013 43.3 9.6 73 511-586 75-158 (391)
255 2ce7_A Cell division protein F 82.8 2.9 0.0001 46.0 8.6 21 189-209 50-70 (476)
256 3fe2_A Probable ATP-dependent 82.7 3.6 0.00012 40.6 8.7 71 511-585 101-181 (242)
257 1qvr_A CLPB protein; coiled co 82.3 3.3 0.00011 49.4 9.7 19 188-206 191-209 (854)
258 1vec_A ATP-dependent RNA helic 82.1 4.6 0.00016 38.4 9.0 56 511-570 70-130 (206)
259 3bor_A Human initiation factor 81.9 2.9 0.0001 41.1 7.6 72 511-585 97-178 (237)
260 1sxj_C Activator 1 40 kDa subu 81.8 2.7 9.1E-05 44.0 7.7 18 190-207 48-65 (340)
261 2d9s_A CBL E3 ubiquitin protei 80.9 2 6.7E-05 31.2 4.1 33 9-41 10-42 (53)
262 1w4r_A Thymidine kinase; type 80.7 3 0.0001 39.8 6.8 35 188-222 20-57 (195)
263 3i32_A Heat resistant RNA depe 80.2 5.5 0.00019 40.9 9.2 73 212-292 27-102 (300)
264 1ypw_A Transitional endoplasmi 80.1 3.4 0.00012 48.9 8.5 23 188-210 238-260 (806)
265 3cf2_A TER ATPase, transitiona 80.1 3.3 0.00011 48.7 8.2 26 189-214 239-264 (806)
266 1wj7_A Hypothetical protein (R 79.7 4.1 0.00014 34.2 6.4 41 8-48 39-80 (104)
267 2juj_A E3 ubiquitin-protein li 79.6 2.7 9.1E-05 30.6 4.4 30 9-38 8-37 (56)
268 4ae4_A Ubiquitin-associated pr 78.9 2 6.9E-05 37.4 4.5 39 7-45 7-45 (118)
269 2fna_A Conserved hypothetical 77.6 20 0.00068 37.0 12.9 28 177-205 20-47 (357)
270 1qde_A EIF4A, translation init 77.5 3.4 0.00012 40.0 6.4 55 511-570 81-139 (224)
271 1r6b_X CLPA protein; AAA+, N-t 77.1 3.8 0.00013 48.2 7.7 19 188-206 207-225 (758)
272 2yhs_A FTSY, cell division pro 76.9 20 0.00068 39.4 12.7 30 190-219 295-327 (503)
273 2gxq_A Heat resistant RNA depe 76.9 6.6 0.00023 37.2 8.2 71 511-585 71-149 (207)
274 3iuy_A Probable ATP-dependent 76.7 4.9 0.00017 39.1 7.3 71 511-585 93-172 (228)
275 2i4i_A ATP-dependent RNA helic 76.6 7.1 0.00024 41.6 9.3 73 212-292 275-350 (417)
276 2lbc_A Ubiquitin carboxyl-term 76.4 2.7 9.3E-05 37.1 4.7 39 9-47 4-43 (126)
277 2pl3_A Probable ATP-dependent 76.4 4.6 0.00016 39.5 7.0 55 511-570 96-154 (236)
278 1oqy_A HHR23A, UV excision rep 76.3 1.5 5.2E-05 46.4 3.5 41 8-48 168-208 (368)
279 3hws_A ATP-dependent CLP prote 75.7 7 0.00024 41.2 8.7 28 187-214 50-77 (363)
280 2oap_1 GSPE-2, type II secreti 75.5 3.3 0.00011 46.1 6.2 32 173-204 244-276 (511)
281 1e9r_A Conjugal transfer prote 75.2 1.6 5.6E-05 47.5 3.6 40 188-227 53-95 (437)
282 1ls1_A Signal recognition part 75.0 58 0.002 32.9 15.2 33 187-219 97-132 (295)
283 3e70_C DPA, signal recognition 75.0 36 0.0012 35.2 13.7 128 188-349 129-262 (328)
284 1q0u_A Bstdead; DEAD protein, 74.5 2.9 0.0001 40.4 4.9 71 511-585 71-155 (219)
285 2oo9_A E3 ubiquitin-protein li 74.0 5.6 0.00019 27.8 4.6 30 9-38 5-34 (46)
286 2dhr_A FTSH; AAA+ protein, hex 73.5 6.8 0.00023 43.4 8.0 21 189-209 65-85 (499)
287 3cf2_A TER ATPase, transitiona 73.1 2.7 9.2E-05 49.4 4.9 32 188-219 511-542 (806)
288 2v6i_A RNA helicase; membrane, 73.0 4.9 0.00017 43.7 6.7 55 213-268 171-225 (431)
289 1yks_A Genome polyprotein [con 72.3 3.6 0.00012 44.8 5.5 56 212-268 176-231 (440)
290 3ly5_A ATP-dependent RNA helic 71.9 12 0.00041 37.3 8.9 71 512-586 126-207 (262)
291 3gk5_A Uncharacterized rhodane 71.8 4.2 0.00014 34.6 4.7 37 511-547 54-90 (108)
292 3foj_A Uncharacterized protein 71.4 4.3 0.00015 33.9 4.6 37 511-547 55-91 (100)
293 2ffh_A Protein (FFH); SRP54, s 70.7 81 0.0028 33.8 15.6 53 188-240 98-156 (425)
294 1fuu_A Yeast initiation factor 70.5 14 0.00046 38.9 9.5 71 511-586 88-168 (394)
295 1hv8_A Putative ATP-dependent 70.4 9 0.00031 39.8 8.0 73 212-292 237-312 (367)
296 3fht_A ATP-dependent RNA helic 70.3 8.4 0.00029 40.9 7.8 73 212-292 265-340 (412)
297 2r8r_A Sensor protein; KDPD, P 70.3 31 0.0011 33.6 11.0 17 190-206 8-24 (228)
298 1wrb_A DJVLGB; RNA helicase, D 70.2 13 0.00043 36.7 8.6 55 512-570 100-158 (253)
299 3pxi_A Negative regulator of g 70.2 7.5 0.00025 45.6 7.9 18 190-207 523-540 (758)
300 1s2m_A Putative ATP-dependent 69.7 9.4 0.00032 40.4 8.0 57 212-268 257-316 (400)
301 3pey_A ATP-dependent RNA helic 68.9 9.7 0.00033 40.1 7.9 76 212-295 242-320 (395)
302 3iwh_A Rhodanese-like domain p 68.9 4.4 0.00015 34.2 4.1 36 511-546 55-90 (103)
303 1xjc_A MOBB protein homolog; s 68.5 5.5 0.00019 37.1 5.0 14 191-204 7-20 (169)
304 2j37_W Signal recognition part 67.9 19 0.00064 39.8 10.0 107 190-296 103-225 (504)
305 3eme_A Rhodanese-like domain p 67.3 4.9 0.00017 33.7 4.1 37 511-547 55-91 (103)
306 1qvr_A CLPB protein; coiled co 66.1 7.3 0.00025 46.4 6.7 17 190-206 590-606 (854)
307 3b85_A Phosphate starvation-in 66.1 6.1 0.00021 38.1 5.0 33 174-206 8-40 (208)
308 2j0s_A ATP-dependent RNA helic 65.7 12 0.0004 39.9 7.8 73 212-292 275-350 (410)
309 1wv9_A Rhodanese homolog TT165 65.4 6.6 0.00023 32.2 4.5 35 513-547 54-88 (94)
310 3nwn_A Kinesin-like protein KI 64.4 4.5 0.00016 42.6 4.0 27 180-206 95-123 (359)
311 3fmo_B ATP-dependent RNA helic 64.3 7.7 0.00026 39.7 5.7 69 511-586 161-241 (300)
312 2r44_A Uncharacterized protein 63.9 5.6 0.00019 41.2 4.6 25 183-207 41-65 (331)
313 2yjt_D ATP-dependent RNA helic 66.6 1.6 5.4E-05 40.7 0.0 55 213-267 30-87 (170)
314 3eiq_A Eukaryotic initiation f 62.5 23 0.00077 37.5 9.3 72 511-585 107-188 (414)
315 3crm_A TRNA delta(2)-isopenten 62.4 13 0.00043 38.6 6.9 21 190-210 7-27 (323)
316 2wv9_A Flavivirin protease NS2 62.4 8.3 0.00028 44.5 6.0 55 213-268 410-464 (673)
317 1rj9_A FTSY, signal recognitio 61.7 1E+02 0.0034 31.4 13.6 57 286-350 184-242 (304)
318 1tue_A Replication protein E1; 61.5 8.1 0.00028 37.2 4.7 46 156-205 26-75 (212)
319 1j8m_F SRP54, signal recogniti 61.3 32 0.0011 35.0 9.7 53 189-241 99-157 (297)
320 3dkp_A Probable ATP-dependent 61.1 4.6 0.00016 39.7 3.2 71 512-585 98-180 (245)
321 2db3_A ATP-dependent RNA helic 60.9 16 0.00055 39.5 7.8 72 213-292 300-374 (434)
322 1p9r_A General secretion pathw 60.8 6.7 0.00023 42.3 4.6 31 174-204 151-183 (418)
323 3sqw_A ATP-dependent RNA helic 60.8 16 0.00056 41.1 8.1 75 212-294 287-367 (579)
324 3a8t_A Adenylate isopentenyltr 60.5 5.1 0.00018 41.8 3.4 20 189-208 41-60 (339)
325 3i5x_A ATP-dependent RNA helic 60.4 17 0.00057 40.7 8.1 74 212-293 338-417 (563)
326 1bg2_A Kinesin; motor protein, 60.3 6 0.00021 41.1 4.0 27 180-206 68-96 (325)
327 2d7d_A Uvrabc system protein B 60.1 24 0.00081 40.6 9.3 79 212-298 444-525 (661)
328 1c4o_A DNA nucleotide excision 59.5 24 0.00084 40.5 9.3 79 212-298 438-519 (664)
329 2nr8_A Kinesin-like protein KI 59.5 6.3 0.00021 41.6 4.0 26 180-205 94-121 (358)
330 3dc4_A Kinesin-like protein NO 59.3 6 0.00021 41.4 3.7 25 181-205 86-112 (344)
331 2og2_A Putative signal recogni 59.1 1.7E+02 0.0059 30.4 15.5 33 188-220 157-192 (359)
332 3nbx_X ATPase RAVA; AAA+ ATPas 58.8 6.4 0.00022 43.6 4.1 29 181-209 34-62 (500)
333 3b6u_A Kinesin-like protein KI 58.6 6.6 0.00023 41.6 4.0 26 180-205 92-119 (372)
334 3g5j_A Putative ATP/GTP bindin 58.6 4.7 0.00016 35.4 2.4 38 511-548 87-126 (134)
335 4a14_A Kinesin, kinesin-like p 58.5 6.7 0.00023 41.1 4.0 25 181-205 75-101 (344)
336 2l82_A Designed protein OR32; 58.4 37 0.0013 28.3 7.5 51 515-565 5-55 (162)
337 2h58_A Kinesin-like protein KI 58.4 6.8 0.00023 40.8 4.0 26 180-205 71-98 (330)
338 3gbj_A KIF13B protein; kinesin 58.3 6.7 0.00023 41.3 4.0 26 180-205 83-110 (354)
339 1gvn_B Zeta; postsegregational 58.3 56 0.0019 32.9 10.9 33 189-221 34-66 (287)
340 2jlq_A Serine protease subunit 58.2 9.6 0.00033 41.6 5.4 55 213-268 188-242 (451)
341 2vvg_A Kinesin-2; motor protei 58.1 6.9 0.00024 41.1 4.0 26 180-205 80-107 (350)
342 2y65_A Kinesin, kinesin heavy 58.0 6.9 0.00023 41.4 4.0 26 180-205 75-102 (365)
343 1t5c_A CENP-E protein, centrom 57.9 6.9 0.00024 41.1 4.0 26 180-205 68-95 (349)
344 2zfi_A Kinesin-like protein KI 57.7 7 0.00024 41.4 4.0 26 180-205 80-107 (366)
345 1x88_A Kinesin-like protein KI 57.2 6.6 0.00023 41.4 3.7 27 180-206 79-107 (359)
346 1ofh_A ATP-dependent HSL prote 57.1 7.4 0.00025 39.6 4.0 22 188-209 50-71 (310)
347 1lv7_A FTSH; alpha/beta domain 57.0 7.1 0.00024 38.7 3.8 21 188-208 45-65 (257)
348 4etp_A Kinesin-like protein KA 56.8 7.6 0.00026 41.7 4.1 26 181-206 132-159 (403)
349 1v8k_A Kinesin-like protein KI 56.8 7.4 0.00025 41.7 4.0 27 180-206 145-173 (410)
350 2gza_A Type IV secretion syste 56.7 6.8 0.00023 41.4 3.7 22 185-206 172-193 (361)
351 3lre_A Kinesin-like protein KI 56.6 6.8 0.00023 41.2 3.6 26 180-205 96-123 (355)
352 3exa_A TRNA delta(2)-isopenten 56.5 6.7 0.00023 40.5 3.5 18 190-207 5-22 (322)
353 3foz_A TRNA delta(2)-isopenten 56.5 6.6 0.00023 40.4 3.4 16 191-206 13-28 (316)
354 1gku_B Reverse gyrase, TOP-RG; 56.4 15 0.00053 44.7 7.3 73 511-585 98-180 (1054)
355 2wbe_C Bipolar kinesin KRP-130 56.2 7.1 0.00024 41.4 3.7 26 180-205 91-118 (373)
356 1goj_A Kinesin, kinesin heavy 56.0 7.1 0.00024 41.1 3.7 25 181-205 72-98 (355)
357 2oca_A DAR protein, ATP-depend 55.9 21 0.00072 39.3 7.8 90 213-315 347-439 (510)
358 2xxa_A Signal recognition part 55.7 22 0.00074 38.5 7.6 42 190-231 102-149 (433)
359 4ag6_A VIRB4 ATPase, type IV s 55.6 7.7 0.00026 41.4 4.0 38 187-224 34-74 (392)
360 1wp9_A ATP-dependent RNA helic 55.4 29 0.001 37.2 8.8 74 212-293 360-444 (494)
361 3ice_A Transcription terminati 55.4 1E+02 0.0035 32.8 12.2 30 177-206 160-192 (422)
362 3flh_A Uncharacterized protein 55.3 6.5 0.00022 34.3 2.7 37 511-547 70-108 (124)
363 2whx_A Serine protease/ntpase/ 55.0 16 0.00056 41.5 6.8 55 213-268 355-409 (618)
364 2heh_A KIF2C protein; kinesin, 54.6 7.7 0.00026 41.2 3.7 26 180-205 125-152 (387)
365 4a2p_A RIG-I, retinoic acid in 54.4 16 0.00056 40.5 6.7 71 512-586 55-136 (556)
366 3u06_A Protein claret segregat 54.3 8.5 0.00029 41.4 4.0 26 180-205 129-156 (412)
367 3cob_A Kinesin heavy chain-lik 54.0 7.2 0.00025 41.2 3.3 25 181-205 71-97 (369)
368 1g41_A Heat shock protein HSLU 53.9 17 0.00059 39.3 6.4 22 188-209 50-71 (444)
369 2pt7_A CAG-ALFA; ATPase, prote 53.8 7.9 0.00027 40.3 3.6 19 187-205 170-188 (330)
370 1u0j_A DNA replication protein 53.7 10 0.00035 38.1 4.2 46 160-209 74-125 (267)
371 2owm_A Nckin3-434, related to 53.5 8.8 0.0003 41.7 4.0 25 181-205 128-154 (443)
372 1um8_A ATP-dependent CLP prote 52.9 10 0.00034 40.1 4.3 22 188-209 72-93 (376)
373 3hix_A ALR3790 protein; rhodan 52.8 11 0.00037 31.7 3.7 37 511-547 51-88 (106)
374 1kgd_A CASK, peripheral plasma 52.5 7.5 0.00026 36.3 2.9 20 187-206 4-23 (180)
375 3t0q_A AGR253WP; kinesin, alph 52.3 7.3 0.00025 40.9 3.0 26 181-206 77-104 (349)
376 4fcw_A Chaperone protein CLPB; 51.9 6.8 0.00023 40.0 2.7 19 189-207 48-66 (311)
377 1tf7_A KAIC; homohexamer, hexa 51.8 1.4E+02 0.0047 32.9 13.7 34 187-220 38-75 (525)
378 1f9v_A Kinesin-like protein KA 51.7 7.3 0.00025 40.8 2.9 26 181-206 76-103 (347)
379 2eyu_A Twitching motility prot 51.6 6.3 0.00022 39.5 2.3 20 186-205 23-42 (261)
380 3bfn_A Kinesin-like protein KI 51.3 7.4 0.00025 41.4 2.9 24 182-205 91-116 (388)
381 3vaa_A Shikimate kinase, SK; s 50.8 8.1 0.00028 36.6 2.9 23 187-209 24-46 (199)
382 2z0m_A 337AA long hypothetical 50.7 29 0.00099 35.3 7.4 70 512-586 56-135 (337)
383 3trf_A Shikimate kinase, SK; a 50.4 8.2 0.00028 35.9 2.8 22 188-209 5-26 (185)
384 3dr5_A Putative O-methyltransf 50.0 96 0.0033 29.7 10.7 126 168-297 31-166 (221)
385 2fsf_A Preprotein translocase 49.8 25 0.00084 41.2 7.1 55 511-571 114-172 (853)
386 3b6e_A Interferon-induced heli 49.7 13 0.00046 35.2 4.3 56 511-570 81-140 (216)
387 2rep_A Kinesin-like protein KI 49.4 8.6 0.00029 40.8 3.0 26 181-206 107-134 (376)
388 1ex7_A Guanylate kinase; subst 49.3 11 0.00038 35.6 3.5 17 189-205 2-18 (186)
389 2ze6_A Isopentenyl transferase 49.3 9.3 0.00032 38.0 3.2 16 191-206 4-19 (253)
390 2l8b_A Protein TRAI, DNA helic 49.0 14 0.00049 34.6 4.1 52 176-227 37-94 (189)
391 1c9k_A COBU, adenosylcobinamid 48.2 11 0.00036 35.5 3.1 33 191-224 2-34 (180)
392 2z83_A Helicase/nucleoside tri 48.2 9.8 0.00034 41.6 3.4 55 213-268 190-244 (459)
393 3nhv_A BH2092 protein; alpha-b 48.1 12 0.00042 33.5 3.5 37 511-547 71-109 (144)
394 1tf7_A KAIC; homohexamer, hexa 48.0 1.1E+02 0.0036 33.9 12.0 51 187-238 280-333 (525)
395 1gmx_A GLPE protein; transfera 47.9 10 0.00035 31.9 2.8 37 511-547 57-94 (108)
396 1kag_A SKI, shikimate kinase I 47.8 15 0.00051 33.6 4.1 22 188-209 4-25 (173)
397 2ykg_A Probable ATP-dependent 47.5 20 0.00067 41.4 6.0 71 512-586 61-142 (696)
398 3tau_A Guanylate kinase, GMP k 47.4 9.8 0.00034 36.4 2.9 20 188-207 8-27 (208)
399 1ry6_A Internal kinesin; kines 47.4 12 0.00041 39.4 3.7 25 182-206 76-103 (360)
400 1lvg_A Guanylate kinase, GMP k 47.4 10 0.00035 36.0 3.0 19 187-205 3-21 (198)
401 3o8b_A HCV NS3 protease/helica 47.3 21 0.00071 40.9 5.9 53 212-268 395-447 (666)
402 1tf5_A Preprotein translocase 47.3 31 0.001 40.4 7.4 54 511-570 123-180 (844)
403 1hqc_A RUVB; extended AAA-ATPa 47.0 11 0.00038 38.6 3.4 20 188-207 38-57 (324)
404 1qhx_A CPT, protein (chloramph 46.9 14 0.00049 33.8 3.9 22 188-209 3-24 (178)
405 2r62_A Cell division protease 46.2 7.5 0.00026 38.8 1.9 21 188-208 44-64 (268)
406 3d3q_A TRNA delta(2)-isopenten 46.0 12 0.0004 39.1 3.4 17 190-206 9-25 (340)
407 1tq1_A AT5G66040, senescence-a 46.0 14 0.00048 32.3 3.5 37 511-547 81-118 (129)
408 3tbk_A RIG-I helicase domain; 45.8 15 0.00053 40.6 4.7 70 512-585 52-132 (555)
409 2qmh_A HPR kinase/phosphorylas 45.7 9 0.00031 36.7 2.2 18 188-205 34-51 (205)
410 2k0z_A Uncharacterized protein 45.7 20 0.00069 30.2 4.3 37 511-547 55-91 (110)
411 4akg_A Glutathione S-transfera 45.7 23 0.00079 47.3 6.7 52 156-209 889-944 (2695)
412 3iij_A Coilin-interacting nucl 45.6 12 0.00042 34.6 3.2 23 187-209 10-32 (180)
413 4a2q_A RIG-I, retinoic acid in 45.2 23 0.00079 41.6 6.2 70 512-585 296-376 (797)
414 3nwj_A ATSK2; P loop, shikimat 44.9 13 0.00046 36.8 3.5 24 186-209 46-69 (250)
415 1zp6_A Hypothetical protein AT 44.6 15 0.00051 34.2 3.7 22 187-208 8-29 (191)
416 3eph_A TRNA isopentenyltransfe 43.7 12 0.00042 39.9 3.1 16 191-206 5-20 (409)
417 2fsx_A RV0390, COG0607: rhodan 43.5 17 0.00059 32.6 3.8 37 511-547 79-116 (148)
418 3cbg_A O-methyltransferase; cy 43.0 2.2E+02 0.0076 27.0 12.2 121 173-297 55-185 (232)
419 2ewv_A Twitching motility prot 43.0 10 0.00034 40.3 2.3 19 187-205 135-153 (372)
420 1y63_A LMAJ004144AAA protein; 42.9 13 0.00044 34.7 2.8 23 187-209 9-31 (184)
421 3b9q_A Chloroplast SRP recepto 42.9 2.8E+02 0.0094 28.0 16.0 33 188-220 100-135 (302)
422 2v9p_A Replication protein E1; 42.7 12 0.00042 38.4 2.8 34 187-221 125-159 (305)
423 1ixz_A ATP-dependent metallopr 42.7 17 0.00059 35.8 3.9 19 189-207 50-68 (254)
424 3ipz_A Monothiol glutaredoxin- 42.4 47 0.0016 27.9 6.2 59 508-566 13-77 (109)
425 3ney_A 55 kDa erythrocyte memb 42.2 14 0.00046 35.3 2.9 20 187-206 18-37 (197)
426 2jtq_A Phage shock protein E; 42.1 23 0.00078 28.1 3.9 36 511-547 40-76 (85)
427 3lw7_A Adenylate kinase relate 42.0 11 0.00038 34.3 2.2 19 190-208 3-21 (179)
428 1nkt_A Preprotein translocase 42.0 43 0.0015 39.4 7.4 54 511-570 151-208 (922)
429 3jux_A Protein translocase sub 41.9 34 0.0012 39.5 6.5 56 213-268 474-530 (822)
430 2x8a_A Nuclear valosin-contain 41.7 19 0.00066 36.1 4.2 20 189-208 45-64 (274)
431 2hhg_A Hypothetical protein RP 41.6 15 0.00051 32.5 2.9 37 511-547 85-122 (139)
432 1sky_E F1-ATPase, F1-ATP synth 41.5 1.1E+02 0.0037 33.3 10.2 25 181-205 141-168 (473)
433 2qor_A Guanylate kinase; phosp 41.4 15 0.00052 34.8 3.2 20 187-206 11-30 (204)
434 2j41_A Guanylate kinase; GMP, 41.4 12 0.00042 35.3 2.5 21 187-207 5-25 (207)
435 3d1p_A Putative thiosulfate su 41.3 17 0.00059 32.1 3.3 37 511-547 90-127 (139)
436 3rc3_A ATP-dependent RNA helic 41.3 42 0.0014 38.5 7.3 74 216-298 323-401 (677)
437 3tr0_A Guanylate kinase, GMP k 41.1 14 0.00048 34.8 2.9 20 187-206 6-25 (205)
438 3jvv_A Twitching mobility prot 41.0 13 0.00043 39.2 2.7 17 188-204 123-139 (356)
439 2c9o_A RUVB-like 1; hexameric 40.9 13 0.00043 40.7 2.8 20 188-207 63-82 (456)
440 3zyw_A Glutaredoxin-3; metal b 40.8 42 0.0014 28.4 5.6 59 509-567 12-76 (111)
441 1qxn_A SUD, sulfide dehydrogen 40.7 14 0.00049 32.7 2.7 37 511-547 81-118 (137)
442 3b8x_A WBDK, pyridoxamine 5-ph 40.6 2.4E+02 0.0081 29.1 12.9 82 213-299 80-167 (390)
443 2r2a_A Uncharacterized protein 40.0 13 0.00044 35.6 2.3 17 190-206 7-23 (199)
444 2p5t_B PEZT; postsegregational 39.9 27 0.00094 34.4 4.9 21 189-209 33-53 (253)
445 3a00_A Guanylate kinase, GMP k 39.5 17 0.00057 34.0 3.1 18 189-206 2-19 (186)
446 3ilm_A ALR3790 protein; rhodan 39.4 22 0.00075 31.7 3.7 37 511-547 55-92 (141)
447 1z6g_A Guanylate kinase; struc 39.2 17 0.00059 35.0 3.2 19 187-205 22-40 (218)
448 2ipc_A Preprotein translocase 38.7 41 0.0014 39.7 6.6 55 511-571 119-177 (997)
449 1iy2_A ATP-dependent metallopr 38.6 21 0.00073 35.7 3.9 20 189-208 74-93 (278)
450 2bdt_A BH3686; alpha-beta prot 38.6 23 0.0008 32.8 4.0 20 190-209 4-23 (189)
451 1g8p_A Magnesium-chelatase 38 38.4 19 0.00067 37.1 3.7 21 188-208 45-65 (350)
452 1kht_A Adenylate kinase; phosp 38.4 16 0.00056 33.8 2.8 20 188-207 3-22 (192)
453 3kb2_A SPBC2 prophage-derived 38.0 16 0.00056 33.1 2.7 18 190-207 3-20 (173)
454 4eun_A Thermoresistant glucoki 37.7 17 0.00059 34.3 2.9 21 187-207 28-48 (200)
455 3vkg_A Dynein heavy chain, cyt 37.4 39 0.0013 45.8 6.9 64 156-221 872-945 (3245)
456 4h1g_A Maltose binding protein 37.4 20 0.00067 41.7 3.8 26 180-205 453-480 (715)
457 1ly1_A Polynucleotide kinase; 36.5 18 0.00061 33.2 2.7 19 190-208 4-22 (181)
458 1knq_A Gluconate kinase; ALFA/ 36.2 16 0.00055 33.5 2.3 20 188-207 8-27 (175)
459 1nij_A Hypothetical protein YJ 36.2 24 0.00083 36.3 3.9 32 191-222 7-39 (318)
460 2yan_A Glutaredoxin-3; oxidore 35.8 52 0.0018 27.2 5.4 57 511-567 15-77 (105)
461 4a2w_A RIG-I, retinoic acid in 35.5 33 0.0011 41.1 5.5 70 512-585 296-376 (936)
462 1in4_A RUVB, holliday junction 35.4 19 0.00064 37.4 2.9 21 189-209 52-72 (334)
463 4gl2_A Interferon-induced heli 34.9 23 0.00077 40.8 3.8 71 213-291 400-487 (699)
464 4akg_A Glutathione S-transfera 34.7 33 0.0011 45.9 5.6 25 181-205 1259-1284(2695)
465 3m6a_A ATP-dependent protease 34.7 26 0.00088 39.2 4.1 23 187-209 107-129 (543)
466 1f2t_A RAD50 ABC-ATPase; DNA d 34.6 17 0.00059 32.7 2.2 14 191-204 26-39 (149)
467 2fz4_A DNA repair protein RAD2 34.5 52 0.0018 32.0 5.9 46 512-570 133-179 (237)
468 3k1j_A LON protease, ATP-depen 34.5 29 0.00098 39.4 4.5 25 185-209 57-81 (604)
469 4fn4_A Short chain dehydrogena 34.4 1.2E+02 0.0042 29.8 8.7 82 186-269 5-93 (254)
470 4gp7_A Metallophosphoesterase; 34.4 15 0.00052 33.8 1.8 20 188-207 9-28 (171)
471 2qxy_A Response regulator; reg 34.3 2.1E+02 0.0072 24.1 10.9 49 284-349 46-94 (142)
472 1znw_A Guanylate kinase, GMP k 34.3 21 0.00072 33.9 2.9 23 184-206 16-38 (207)
473 3tqc_A Pantothenate kinase; bi 34.3 42 0.0014 34.6 5.4 15 191-205 95-109 (321)
474 1via_A Shikimate kinase; struc 34.2 22 0.00076 32.6 3.0 21 189-209 5-25 (175)
475 3kta_A Chromosome segregation 34.1 23 0.0008 32.6 3.1 18 190-207 28-45 (182)
476 3cm0_A Adenylate kinase; ATP-b 34.0 16 0.00053 33.9 1.9 22 188-209 4-25 (186)
477 3uie_A Adenylyl-sulfate kinase 33.9 18 0.00063 34.1 2.4 32 174-206 12-43 (200)
478 3f9v_A Minichromosome maintena 33.9 16 0.00055 41.4 2.3 20 190-209 329-348 (595)
479 3pxg_A Negative regulator of g 33.6 33 0.0011 37.4 4.7 20 188-207 201-220 (468)
480 1vee_A Proline-rich protein fa 33.4 22 0.00076 31.2 2.7 37 511-547 73-110 (134)
481 4dzz_A Plasmid partitioning pr 33.1 63 0.0022 30.1 6.2 31 261-296 55-85 (206)
482 2qt1_A Nicotinamide riboside k 32.8 34 0.0012 32.3 4.1 21 188-208 21-41 (207)
483 2ius_A DNA translocase FTSK; n 32.7 22 0.00075 39.3 3.0 19 187-205 166-184 (512)
484 1zuh_A Shikimate kinase; alpha 32.6 22 0.00075 32.3 2.6 21 189-209 8-28 (168)
485 3nnk_A Ureidoglycine-glyoxylat 32.4 93 0.0032 32.4 8.0 103 194-299 67-180 (411)
486 1zd8_A GTP:AMP phosphotransfer 32.4 32 0.0011 33.0 4.0 22 188-209 7-28 (227)
487 3l9o_A ATP-dependent RNA helic 32.2 41 0.0014 41.1 5.6 64 511-585 226-295 (1108)
488 3eod_A Protein HNR; response r 32.2 2.1E+02 0.0073 23.6 9.9 20 330-349 79-98 (130)
489 2va8_A SSO2462, SKI2-type heli 32.1 1.1E+02 0.0039 35.0 9.2 60 209-268 248-346 (715)
490 3ele_A Amino transferase; RER0 32.1 4.3E+02 0.015 27.0 14.1 135 157-301 53-225 (398)
491 3t61_A Gluconokinase; PSI-biol 32.0 23 0.00078 33.4 2.7 19 189-207 19-37 (202)
492 1tev_A UMP-CMP kinase; ploop, 32.0 26 0.00087 32.5 3.1 20 188-207 3-22 (196)
493 3a4m_A L-seryl-tRNA(SEC) kinas 31.9 34 0.0012 33.9 4.1 19 189-207 5-23 (260)
494 2cb1_A O-acetyl homoserine sul 31.7 4.1E+02 0.014 27.6 13.1 98 197-299 77-182 (412)
495 3hv2_A Response regulator/HD d 31.4 2.4E+02 0.0083 24.2 9.6 49 285-349 57-105 (153)
496 4fn4_A Short chain dehydrogena 31.4 1.2E+02 0.004 30.0 7.9 60 511-570 30-92 (254)
497 3lvm_A Cysteine desulfurase; s 31.2 1.2E+02 0.0041 31.8 8.7 86 212-299 112-205 (423)
498 3qf7_A RAD50; ABC-ATPase, ATPa 31.0 20 0.00067 37.8 2.2 16 190-205 25-40 (365)
499 2l82_A Designed protein OR32; 31.0 2E+02 0.0068 23.9 7.7 51 515-565 82-132 (162)
500 3lnc_A Guanylate kinase, GMP k 31.0 19 0.00065 34.9 2.0 20 187-206 26-45 (231)
No 1
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.2e-79 Score=707.95 Aligned_cols=472 Identities=32% Similarity=0.536 Sum_probs=397.5
Q ss_pred cCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHH
Q 004098 152 EIGSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCS 231 (774)
Q Consensus 152 ~~~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~ 231 (774)
...++|...+.+.|++.|||..|||+|.++|+.+++|+|++++||||+|||+||++|++...+.+|||+|+++||.||++
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~~ 102 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLM 102 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEcCCCChHHHHHH---H--HcCCceEEEEChHHHH---HHHHHHHHHHHhcCccEEEEecccccccCCC
Q 004098 232 KLSKHGVTACFLGSGQPDNKVEQK---A--LRGMYSIIYVCPETVI---RLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303 (774)
Q Consensus 232 ~l~~~gi~~~~l~~~~~~~~~~~~---~--~~~~~~Ilv~TPe~l~---~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~ 303 (774)
.+.++|+.+..++++......... + ..+.++|+|+|||+|. .++..+.....+.++++||||||||+++|||
T Consensus 103 ~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~ 182 (591)
T 2v1x_A 103 VLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGH 182 (591)
T ss_dssp HHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCT
T ss_pred HHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccccccc
Confidence 999999999999998876543222 2 2567899999999985 4555556666778999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccch
Q 004098 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRA 383 (774)
Q Consensus 304 ~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~ 383 (774)
+|++.|..|..++..++ ++|+++||||+++.+..++...|++. .+..+..++.++++.|.+........
T Consensus 183 dfr~~~~~l~~l~~~~~---------~~~ii~lSAT~~~~v~~~i~~~l~~~-~~~~~~~~~~r~nl~~~v~~~~~~~~- 251 (591)
T 2v1x_A 183 DFRPDYKALGILKRQFP---------NASLIGLTATATNHVLTDAQKILCIE-KCFTFTASFNRPNLYYEVRQKPSNTE- 251 (591)
T ss_dssp TCCGGGGGGGHHHHHCT---------TSEEEEEESSCCHHHHHHHHHHTTCC-SCEEEECCCCCTTEEEEEEECCSSHH-
T ss_pred ccHHHHHHHHHHHHhCC---------CCcEEEEecCCCHHHHHHHHHHhCCC-CcEEEecCCCCcccEEEEEeCCCcHH-
Confidence 99999999988888776 78999999999999999999999987 56778889999999999876432110
Q ss_pred hhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcC
Q 004098 384 SYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEND 463 (774)
Q Consensus 384 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (774)
..+..
T Consensus 252 ---~~~~~------------------------------------------------------------------------ 256 (591)
T 2v1x_A 252 ---DFIED------------------------------------------------------------------------ 256 (591)
T ss_dssp ---HHHHH------------------------------------------------------------------------
T ss_pred ---HHHHH------------------------------------------------------------------------
Confidence 11111
Q ss_pred CCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEec
Q 004098 464 SVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYN 543 (774)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h 543 (774)
+++++.....+.++||||+|++.++.+++.|...|+.+..||
T Consensus 257 --------------------------------------l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h 298 (591)
T 2v1x_A 257 --------------------------------------IVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYH 298 (591)
T ss_dssp --------------------------------------HHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred --------------------------------------HHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEec
Confidence 122222222467899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCCCc
Q 004098 544 ASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT 623 (774)
Q Consensus 544 ~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~~ 623 (774)
|+|++++|..++++|++|+++|||||++++||||+|+|++||||++|.|+++|+||+|||||+|++|.|++||++.|...
T Consensus 299 ~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~ 378 (591)
T 2v1x_A 299 ANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFR 378 (591)
T ss_dssp TTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998776543
Q ss_pred ---cCCCCCCHHHHHHHHHHHHHHHHhccccchhHHHHHHHHcCCCCCCcCCC-CCCCCCCCC-CcccchHHHHHHHHHH
Q 004098 624 ---LLPSRRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQ-LCDVCVDGP-PEMKNLKEEANILMQV 698 (774)
Q Consensus 624 ---~~~~~~~~~~~~~~~~~l~~~~~y~~~~~~Crr~~l~~~f~~~~~~~~c~-~Cd~C~~~~-~~~~~~~~~~~~~~~~ 698 (774)
++.... .....+..|..||.++..|||++|++||||.+....|+ +||+|...+ ++.+|+|++|++++++
T Consensus 379 ~~~~~~~~~------~~~~~l~~~~~~~~~~~~Crr~~ll~~f~e~~~~~~c~~~Cd~C~~~~~~~~~d~~~~~~~~l~~ 452 (591)
T 2v1x_A 379 ISSMVVMEN------VGQQKLYEMVSYCQNISKCRRVLMAQHFDEVWNSEACNKMCDNCCKDSAFERKNITEYCRDLIKI 452 (591)
T ss_dssp HHHHTTTST------THHHHHHHHHHHHTCSSSCHHHHHHHHHTCCC---CCCSCBHHHHCCCCEEEEECHHHHHHHHHH
T ss_pred HHHHHhhhh------hhHHHHHHHHHHHhcccccHHHHHHHHcCCCCCccccCCCCCCCCCCCcccccchHHHHHHHHHH
Confidence 222211 12345667778888899999999999999998767895 799999854 4788999999999999
Q ss_pred HHHH---hccCCccc-ceeeeccCcccccccCCCCccchhhhhhhhhhccccCCHHHHHHHHHHHHHcCCceec
Q 004098 699 IAAY---NEQSNSMD-DDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREG 768 (774)
Q Consensus 699 ~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (774)
|.+. +++++... +|+++|+.+++.+..+++ +++.+..+|+.++++|+.+|||.++
T Consensus 453 v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~~~~~l~~~ 511 (591)
T 2v1x_A 453 LKQAEELNEKLTPLKLIDSWMGKGAAKLRVAGVV---------------APTLPREDLEKIIAHFLIQQYLKED 511 (591)
T ss_dssp HHHHHHTTCCCCHHHHHHHHTTCSCGGGCCTTCC---------------CCSCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhcCCcccHHHHHHHHhCCCchHHHhcCCC---------------cCcCCHHHHHHHHHHHHHcCCcEEe
Confidence 9983 33433333 899999766554433322 2567899999999999999999985
No 2
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.8e-77 Score=685.32 Aligned_cols=475 Identities=34% Similarity=0.559 Sum_probs=403.6
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHH
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKL 233 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l 233 (774)
...+++.+.+.|++.|||..|||+|.++|+.+++|+|++++||||+|||+||++|++...+.+|||+|+++|+.||++.+
T Consensus 6 ~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~~~~l 85 (523)
T 1oyw_A 6 VLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQL 85 (523)
T ss_dssp CSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEcCCCChHHH---HHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHH
Q 004098 234 SKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYR 310 (774)
Q Consensus 234 ~~~gi~~~~l~~~~~~~~~---~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~ 310 (774)
.++|+.+..++++...... ...+..+.++|+|+|||+|.... +...+...++++||||||||+++|||+|++.|.
T Consensus 86 ~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~--~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~ 163 (523)
T 1oyw_A 86 QANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDN--FLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYA 163 (523)
T ss_dssp HHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTT--HHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHH
T ss_pred HHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChH--HHHHHhhCCCCEEEEeCccccCcCCCccHHHHH
Confidence 9999999999988776432 34455678999999999986321 234455578999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHH
Q 004098 311 RLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFC 390 (774)
Q Consensus 311 ~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~ 390 (774)
.|..++..++ +.|+++||||+++.+..++...|++. .+.++..++.++++.+.+...... +.
T Consensus 164 ~l~~l~~~~~---------~~~~i~lSAT~~~~~~~~i~~~l~~~-~~~~~~~~~~r~~l~~~v~~~~~~--------~~ 225 (523)
T 1oyw_A 164 ALGQLRQRFP---------TLPFMALTATADDTTRQDIVRLLGLN-DPLIQISSFDRPNIRYMLMEKFKP--------LD 225 (523)
T ss_dssp GGGGHHHHCT---------TSCEEEEESCCCHHHHHHHHHHHTCC-SCEEEECCCCCTTEEEEEEECSSH--------HH
T ss_pred HHHHHHHhCC---------CCCEEEEeCCCCHHHHHHHHHHhCCC-CCeEEeCCCCCCceEEEEEeCCCH--------HH
Confidence 9998888876 79999999999999999999999987 567788899999999988763211 11
Q ss_pred HHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCccccc
Q 004098 391 QLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDV 470 (774)
Q Consensus 391 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 470 (774)
.+.+
T Consensus 226 ~l~~---------------------------------------------------------------------------- 229 (523)
T 1oyw_A 226 QLMR---------------------------------------------------------------------------- 229 (523)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1111
Q ss_pred ccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHH
Q 004098 471 ACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQ 550 (774)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~ 550 (774)
.+... .+.++||||+|++.++.+++.|...|+.+..|||+|++++
T Consensus 230 ----------------------------------~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~ 274 (523)
T 1oyw_A 230 ----------------------------------YVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNV 274 (523)
T ss_dssp ----------------------------------HHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHH
T ss_pred ----------------------------------HHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHH
Confidence 11111 4568999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCCCc---cCCC
Q 004098 551 LRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT---LLPS 627 (774)
Q Consensus 551 R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~~---~~~~ 627 (774)
|..++++|++|+.+|||||++++||||+|+|++||||++|+|+++|+||+|||||+|++|.|++|+++.+... ++..
T Consensus 275 R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 275 RADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp HHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998776542 2322
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccchhHHHHHHHHcCCCCCCcCCCCCCCCCCCCCcccchHHHHHHHHHHHHHHhccCC
Q 004098 628 RRSEDQTKQAYRMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDGPPEMKNLKEEANILMQVIAAYNEQSN 707 (774)
Q Consensus 628 ~~~~~~~~~~~~~l~~~~~y~~~~~~Crr~~l~~~f~~~~~~~~c~~Cd~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (774)
....+........+..|..|| ++..|||++|++||||.+. ..|++||+|.. +++.+|+|.+|+++++++.+.++.++
T Consensus 355 ~~~~~~~~~~~~~l~~m~~~~-~~~~crr~~l~~~f~e~~~-~~c~~cd~c~~-~~~~~d~~~~~~~~l~~~~~~~~~~~ 431 (523)
T 1oyw_A 355 KPQGQLQDIERHKLNAMGAFA-EAQTCRRLVLLNYFGEGRQ-EPCGNCDICLD-PPKQYDGSTDAQIALSTIGRVNQRFG 431 (523)
T ss_dssp SCCSHHHHHHHHHHHHHHHHH-TCSSCHHHHHHHHTTCCCC-SCCSCBHHHHS-CCCEEECHHHHHHHHHHHHHTTTCCC
T ss_pred cCcHHHHHHHHHHHHHHHHHH-hccccHhhhhHhhcCCCCC-CCCCCCCCCCC-CcccccchHHHHHHHHHHHHhccCcC
Confidence 223333344566778888898 6789999999999999874 68999999997 57789999999999999999766655
Q ss_pred ccc-ceeeeccCcccccccCCCCccchhhhhhhhhhccccCCHHHHHHHHHHHHHcCCceecCC
Q 004098 708 SMD-DDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIMENKGYIREGDD 770 (774)
Q Consensus 708 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (774)
... .|+++|+.+++.+..+++.+++| +.|...+..+|+.++++|+..|||.+..+
T Consensus 432 ~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 487 (523)
T 1oyw_A 432 MGYVVEVIRGANNQRIRDYGHDKLKVY--------GMGRDKSHEHWVSVIRQLIHLGLVTQNIA 487 (523)
T ss_dssp HHHHHHHHHTCCCHHHHHHTGGGSTTT--------TTTTTSCHHHHHHHHHHHHHTTSEEEEGG
T ss_pred cchhHHHhcCCCcHhHHhhcccccccc--------cccCCCCHHHHHHHHHHHHHCCCceeccC
Confidence 433 78999977665554455667766 34467899999999999999999987643
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-52 Score=470.27 Aligned_cols=331 Identities=18% Similarity=0.285 Sum_probs=267.1
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc-----------CCeEEEEccc
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT-----------GKVVVVISPL 222 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~-----------~~~~LVvsPt 222 (774)
...+++.+.+.|+ .+||..|+|+|.++|+.+++|+|++++||||+|||++|++|++.. ++.+|||+||
T Consensus 60 ~~~l~~~l~~~l~-~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~Pt 138 (434)
T 2db3_A 60 SADLRDIIIDNVN-KSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPT 138 (434)
T ss_dssp GSCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSS
T ss_pred hcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecC
Confidence 4567889999998 579999999999999999999999999999999999999999742 5689999999
Q ss_pred hHHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 004098 223 ISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (774)
Q Consensus 223 ~~L~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l 298 (774)
++|+.|+++.+.++ ++++..++++..... +...+..+++|+|+||++|.+++. .....+.++++|||||||++
T Consensus 139 reLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~-~~~~l~~~~~Ivv~Tp~~l~~~l~--~~~~~l~~~~~lVlDEah~~ 215 (434)
T 2db3_A 139 RELAIQIFNEARKFAFESYLKIGIVYGGTSFRH-QNECITRGCHVVIATPGRLLDFVD--RTFITFEDTRFVVLDEADRM 215 (434)
T ss_dssp HHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHH-HHHHHTTCCSEEEECHHHHHHHHH--TTSCCCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcEEEEEECCCCHHH-HHHHhhcCCCEEEEChHHHHHHHH--hCCcccccCCeEEEccHhhh
Confidence 99999999999986 467788888877644 334455678999999999988776 44455788999999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEE-ccCC--CCCcEEEEe
Q 004098 299 SKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVL-TSFF--RPNLRFSVK 375 (774)
Q Consensus 299 ~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~-~~~~--r~~l~~~v~ 375 (774)
++|| |++.+..+..... .++..|++++|||++..+...+...+. .+..+. .... ..++...+.
T Consensus 216 ~~~g--f~~~~~~i~~~~~---------~~~~~q~l~~SAT~~~~~~~~~~~~l~---~~~~i~~~~~~~~~~~i~~~~~ 281 (434)
T 2db3_A 216 LDMG--FSEDMRRIMTHVT---------MRPEHQTLMFSATFPEEIQRMAGEFLK---NYVFVAIGIVGGACSDVKQTIY 281 (434)
T ss_dssp TSTT--THHHHHHHHHCTT---------SCSSCEEEEEESCCCHHHHHHHHTTCS---SCEEEEESSTTCCCTTEEEEEE
T ss_pred hccC--cHHHHHHHHHhcC---------CCCCceEEEEeccCCHHHHHHHHHhcc---CCEEEEeccccccccccceEEE
Confidence 9998 9999988843221 234789999999999888776555443 121111 1000 011111100
Q ss_pred ecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccch
Q 004098 376 HSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEM 455 (774)
Q Consensus 376 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (774)
T Consensus 282 -------------------------------------------------------------------------------- 281 (434)
T 2db3_A 282 -------------------------------------------------------------------------------- 281 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhC
Q 004098 456 SVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF 535 (774)
Q Consensus 456 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~ 535 (774)
......+...++++|... ..++||||++++.++.+++.|...
T Consensus 282 ------------------------------------~~~~~~k~~~l~~~l~~~--~~~~lVF~~t~~~a~~l~~~L~~~ 323 (434)
T 2db3_A 282 ------------------------------------EVNKYAKRSKLIEILSEQ--ADGTIVFVETKRGADFLASFLSEK 323 (434)
T ss_dssp ------------------------------------ECCGGGHHHHHHHHHHHC--CTTEEEECSSHHHHHHHHHHHHHT
T ss_pred ------------------------------------EeCcHHHHHHHHHHHHhC--CCCEEEEEeCcHHHHHHHHHHHhC
Confidence 011122334444445443 234999999999999999999999
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEE
Q 004098 536 GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (774)
Q Consensus 536 g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~ 615 (774)
|+.+..+||++++++|.+++++|++|+.+|||||+++++|||+|+|++||+||+|.++++|+||+|||||.|+.|.|++|
T Consensus 324 ~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~ 403 (434)
T 2db3_A 324 EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSF 403 (434)
T ss_dssp TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCC
Q 004098 616 ANLSS 620 (774)
Q Consensus 616 ~~~~~ 620 (774)
+++.+
T Consensus 404 ~~~~~ 408 (434)
T 2db3_A 404 FDPEK 408 (434)
T ss_dssp ECTTT
T ss_pred Eeccc
Confidence 98543
No 4
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1e-51 Score=479.68 Aligned_cols=346 Identities=19% Similarity=0.260 Sum_probs=269.2
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEecCCCchHHHHHHhhhcc----------CCeEEEEccch
Q 004098 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWL--AHHDCLVLAATGSGKSLCFQIPALLT----------GKVVVVISPLI 223 (774)
Q Consensus 156 ~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il--~g~d~lv~apTGsGKTl~~~lpal~~----------~~~~LVvsPt~ 223 (774)
.+++.+.+.|. .+||..|+|+|.++|+.++ .++|+|++||||+|||++|++|++.. ++++|||+||+
T Consensus 78 ~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr 156 (563)
T 3i5x_A 78 VLDKEIHKAIT-RMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 156 (563)
T ss_dssp SSCHHHHHHHH-TTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcH
Confidence 36778888887 6799999999999999999 67899999999999999999999842 34899999999
Q ss_pred HHHHHHHHHHHhc--------CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecc
Q 004098 224 SLMHDQCSKLSKH--------GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEV 295 (774)
Q Consensus 224 ~L~~qq~~~l~~~--------gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEa 295 (774)
+|+.|+++.+.++ ++.+..+.++.........+....++|+|+||++|.+++... ....+..+++||||||
T Consensus 157 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEa 235 (563)
T 3i5x_A 157 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDEA 235 (563)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhc-cccccccceEEEEeCH
Confidence 9999999999874 355777888877666566666667899999999998877642 2335678999999999
Q ss_pred cccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccC--CCC----C
Q 004098 296 HCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSF--FRP----N 369 (774)
Q Consensus 296 H~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~--~r~----~ 369 (774)
|++++|| |++.+..+......... ..++++|+++||||++..+...+...++.. ..++.... ..+ .
T Consensus 236 h~l~~~~--f~~~~~~i~~~l~~~~~----~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 307 (563)
T 3i5x_A 236 DRLLEIG--FRDDLETISGILNEKNS----KSADNIKTLLFSATLDDKVQKLANNIMNKK--ECLFLDTVDKNEPEAHER 307 (563)
T ss_dssp HHHTSTT--THHHHHHHHHHHHHHCS----SCTTCCEEEEEESSCCTHHHHHTTTTCCSS--EEEEEESSCSSSCSSCTT
T ss_pred HHHhccc--hHHHHHHHHHhhhhccc----cCccCceEEEEEccCCHHHHHHHHHhcCCC--ceEEEeccCCCCcccccc
Confidence 9999999 99999998776655431 223468899999999988877655554422 12221111 111 1
Q ss_pred cEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCC
Q 004098 370 LRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNS 449 (774)
Q Consensus 370 l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (774)
+...+..... ....+...
T Consensus 308 ~~~~~~~~~~-----~~~~~~~~--------------------------------------------------------- 325 (563)
T 3i5x_A 308 IDQSVVISEK-----FANSIFAA--------------------------------------------------------- 325 (563)
T ss_dssp EEEEEEEESS-----TTHHHHHH---------------------------------------------------------
T ss_pred CceEEEECch-----hHhhHHHH---------------------------------------------------------
Confidence 1111111000 00000000
Q ss_pred CCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHH
Q 004098 450 PMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIA 529 (774)
Q Consensus 450 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~ 529 (774)
...+...+.......++||||+|++.++.++
T Consensus 326 -------------------------------------------------~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~ 356 (563)
T 3i5x_A 326 -------------------------------------------------VEHIKKQIKERDSNYKAIIFAPTVKFTSFLC 356 (563)
T ss_dssp -------------------------------------------------HHHHHHHHHHTTTCCEEEEECSCHHHHHHHH
T ss_pred -------------------------------------------------HHHHHHHHhhcCCCCcEEEEcCcHHHHHHHH
Confidence 0111122222235679999999999999999
Q ss_pred HHHHhC---CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccC
Q 004098 530 KYLCGF---GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRD 606 (774)
Q Consensus 530 ~~L~~~---g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~ 606 (774)
+.|... ++.+..|||+|++.+|..++++|++|+.+|||||+++++|||+|+|++||+||+|.+++.|+||+|||||.
T Consensus 357 ~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~ 436 (563)
T 3i5x_A 357 SILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARS 436 (563)
T ss_dssp HHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCT
T ss_pred HHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccC
Confidence 999986 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEeeCCCCC
Q 004098 607 GHLADCVLYANLSSMP 622 (774)
Q Consensus 607 G~~g~~il~~~~~~~~ 622 (774)
|+.|.|++|+...+..
T Consensus 437 g~~g~~i~~~~~~e~~ 452 (563)
T 3i5x_A 437 GKEGSSVLFICKDELP 452 (563)
T ss_dssp TCCEEEEEEEEGGGHH
T ss_pred CCCceEEEEEchhHHH
Confidence 9999999999876643
No 5
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.1e-50 Score=471.85 Aligned_cols=347 Identities=19% Similarity=0.250 Sum_probs=270.7
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEecCCCchHHHHHHhhhcc----------CCeEEEEccc
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWL--AHHDCLVLAATGSGKSLCFQIPALLT----------GKVVVVISPL 222 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il--~g~d~lv~apTGsGKTl~~~lpal~~----------~~~~LVvsPt 222 (774)
..+++.+.+.|+ .+||..|||+|.++|+.++ .++|+|+.||||+|||++|++|++.. ++++|||+||
T Consensus 26 ~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Pt 104 (579)
T 3sqw_A 26 GVLDKEIHKAIT-RMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT 104 (579)
T ss_dssp TSSCHHHHHHHH-TTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSS
T ss_pred CCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcch
Confidence 346778889997 6799999999999999999 78999999999999999999999842 3589999999
Q ss_pred hHHHHHHHHHHHhc--------CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEec
Q 004098 223 ISLMHDQCSKLSKH--------GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDE 294 (774)
Q Consensus 223 ~~L~~qq~~~l~~~--------gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDE 294 (774)
++|+.|+.+.+.++ .+.+..+.++.........+....++|+|+||++|.+++... ....+..+++|||||
T Consensus 105 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~~~~~lViDE 183 (579)
T 3sqw_A 105 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDE 183 (579)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEET
T ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc-cccccccCCEEEEEC
Confidence 99999999999874 255777888877666666666667899999999998877632 234567899999999
Q ss_pred ccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEcc--CCCC----
Q 004098 295 VHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTS--FFRP---- 368 (774)
Q Consensus 295 aH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~--~~r~---- 368 (774)
||++++|| |++.+..|......... ..+..+|+++||||+++.+...+...+... ..+.... ...+
T Consensus 184 ah~l~~~g--f~~~~~~i~~~l~~~~~----~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~--~~~~~~~~~~~~~~~~~ 255 (579)
T 3sqw_A 184 ADRLLEIG--FRDDLETISGILNEKNS----KSADNIKTLLFSATLDDKVQKLANNIMNKK--ECLFLDTVDKNEPEAHE 255 (579)
T ss_dssp HHHHTSTT--THHHHHHHHHHHHHHCS----SCTTCCEEEEEESSCCTHHHHHTTTTCCSS--EEEEEESSCSSSCSSCT
T ss_pred hHHhhcCC--CHHHHHHHHHHhhhhhc----ccccCceEEEEeccCChHHHHHHHHHcCCC--ceEEEeecCcccccccc
Confidence 99999999 99999999777665431 223367999999999988877655555432 1111111 1111
Q ss_pred CcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCC
Q 004098 369 NLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGN 448 (774)
Q Consensus 369 ~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (774)
.+...+...... ...+..
T Consensus 256 ~i~~~~~~~~~~-----~~~~~~--------------------------------------------------------- 273 (579)
T 3sqw_A 256 RIDQSVVISEKF-----ANSIFA--------------------------------------------------------- 273 (579)
T ss_dssp TEEEEEEEESST-----THHHHH---------------------------------------------------------
T ss_pred ccceEEEEecch-----hhhHHH---------------------------------------------------------
Confidence 111111110000 000000
Q ss_pred CCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHH
Q 004098 449 SPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSI 528 (774)
Q Consensus 449 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l 528 (774)
....+...+.......++||||+|++.++.+
T Consensus 274 -------------------------------------------------~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l 304 (579)
T 3sqw_A 274 -------------------------------------------------AVEHIKKQIKERDSNYKAIIFAPTVKFTSFL 304 (579)
T ss_dssp -------------------------------------------------HHHHHHHHHHHTTTCCEEEEECSSHHHHHHH
T ss_pred -------------------------------------------------HHHHHHHHHhhcCCCCcEEEECCcHHHHHHH
Confidence 0111122222223567999999999999999
Q ss_pred HHHHHhC---CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhcccc
Q 004098 529 AKYLCGF---GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGR 605 (774)
Q Consensus 529 ~~~L~~~---g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR 605 (774)
++.|... ++.+..|||+|++++|..++++|++|+.+|||||+++++|||+|+|++||+||+|.+++.|+||+|||||
T Consensus 305 ~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR 384 (579)
T 3sqw_A 305 CSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTAR 384 (579)
T ss_dssp HHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSC
T ss_pred HHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhcccccc
Confidence 9999986 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEeeCCCCC
Q 004098 606 DGHLADCVLYANLSSMP 622 (774)
Q Consensus 606 ~G~~g~~il~~~~~~~~ 622 (774)
+|+.|.|++|+...+..
T Consensus 385 ~g~~g~~i~~~~~~e~~ 401 (579)
T 3sqw_A 385 SGKEGSSVLFICKDELP 401 (579)
T ss_dssp TTCCEEEEEEEEGGGHH
T ss_pred CCCCceEEEEEcccHHH
Confidence 99999999999876643
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1e-49 Score=445.14 Aligned_cols=337 Identities=20% Similarity=0.267 Sum_probs=265.2
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc---------------------
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT--------------------- 212 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~--------------------- 212 (774)
...+++.+.+.|. .+||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++..
T Consensus 19 ~~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (417)
T 2i4i_A 19 DVEMGEIIMGNIE-LTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGR 97 (417)
T ss_dssp GSCCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBS
T ss_pred hCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccccccc
Confidence 3467889999998 579999999999999999999999999999999999999999742
Q ss_pred ---CCeEEEEccchHHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhc
Q 004098 213 ---GKVVVVISPLISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESR 285 (774)
Q Consensus 213 ---~~~~LVvsPt~~L~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~ 285 (774)
.+++|||+||++|+.|+++.+.++ ++.++.+.++........ ....+++|+|+||++|.+++. .....+.
T Consensus 98 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~I~v~Tp~~l~~~l~--~~~~~~~ 174 (417)
T 2i4i_A 98 RKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR-DLERGCHLLVATPGRLVDMME--RGKIGLD 174 (417)
T ss_dssp CSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH-HHTTCCSEEEECHHHHHHHHH--TTSBCCT
T ss_pred ccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH-HhhCCCCEEEEChHHHHHHHH--cCCcChh
Confidence 257999999999999999999875 578888888876654333 345568999999999988766 3334567
Q ss_pred CccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEc--
Q 004098 286 GIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT-- 363 (774)
Q Consensus 286 ~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~-- 363 (774)
.+++|||||||++.+|+ |++.+..+...... + .....+++++|||++..+...+...+.- +..+..
T Consensus 175 ~~~~iViDEah~~~~~~--~~~~~~~i~~~~~~-~------~~~~~~~i~~SAT~~~~~~~~~~~~~~~---~~~~~~~~ 242 (417)
T 2i4i_A 175 FCKYLVLDEADRMLDMG--FEPQIRRIVEQDTM-P------PKGVRHTMMFSATFPKEIQMLARDFLDE---YIFLAVGR 242 (417)
T ss_dssp TCCEEEESSHHHHHHTT--CHHHHHHHHTSSSC-C------CBTTBEEEEEESCCCHHHHHHHHHHCSS---CEEEEEC-
T ss_pred hCcEEEEEChhHhhccC--cHHHHHHHHHhccC-C------CcCCcEEEEEEEeCCHHHHHHHHHHcCC---CEEEEeCC
Confidence 89999999999999998 89988887431110 0 0115789999999998877766665542 111111
Q ss_pred -cCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCC
Q 004098 364 -SFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYD 442 (774)
Q Consensus 364 -~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (774)
....+++...+...
T Consensus 243 ~~~~~~~i~~~~~~~----------------------------------------------------------------- 257 (417)
T 2i4i_A 243 VGSTSENITQKVVWV----------------------------------------------------------------- 257 (417)
T ss_dssp ---CCSSEEEEEEEC-----------------------------------------------------------------
T ss_pred CCCCccCceEEEEEe-----------------------------------------------------------------
Confidence 11112222211110
Q ss_pred CccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCch
Q 004098 443 DEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTR 522 (774)
Q Consensus 443 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr 522 (774)
....+...+.+++......+++||||+++
T Consensus 258 ---------------------------------------------------~~~~~~~~l~~~l~~~~~~~~~lVf~~~~ 286 (417)
T 2i4i_A 258 ---------------------------------------------------EESDKRSFLLDLLNATGKDSLTLVFVETK 286 (417)
T ss_dssp ---------------------------------------------------CGGGHHHHHHHHHHTCCTTCEEEEECSSH
T ss_pred ---------------------------------------------------ccHhHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 01122233344444443567899999999
Q ss_pred HHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhc
Q 004098 523 KETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGR 602 (774)
Q Consensus 523 ~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GR 602 (774)
+.++.+++.|.+.|+.+..+||++++++|.+++++|++|+.+|||||+++++|||+|++++||+||+|.|+..|+||+||
T Consensus 287 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR 366 (417)
T 2i4i_A 287 KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGR 366 (417)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceEEEEeeCCCCC
Q 004098 603 AGRDGHLADCVLYANLSSMP 622 (774)
Q Consensus 603 aGR~G~~g~~il~~~~~~~~ 622 (774)
|||.|+.|.|++|++..+..
T Consensus 367 ~gR~g~~g~~~~~~~~~~~~ 386 (417)
T 2i4i_A 367 TGRVGNLGLATSFFNERNIN 386 (417)
T ss_dssp BCC--CCEEEEEEECGGGGG
T ss_pred cccCCCCceEEEEEccccHH
Confidence 99999999999999866543
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.4e-48 Score=435.19 Aligned_cols=330 Identities=17% Similarity=0.236 Sum_probs=258.1
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc------cCCeEEEEccchHHHHH
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHD 228 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~------~~~~~LVvsPt~~L~~q 228 (774)
..+.+.+.+.|. .+||..|+|+|.++++.+++|+|+++++|||+|||++|++|++. .++++|||+||++|+.|
T Consensus 42 ~~l~~~l~~~l~-~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q 120 (410)
T 2j0s_A 42 MGLREDLLRGIY-AYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQ 120 (410)
T ss_dssp GCCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHH
T ss_pred cCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHH
Confidence 457788899997 57999999999999999999999999999999999999999984 46799999999999999
Q ss_pred HHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCC
Q 004098 229 QCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (774)
Q Consensus 229 q~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~ 304 (774)
+.+.+.++ ++.+..+.++......... ....++|+|+||++|.+++. .....+..+++|||||||++.+++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~ivv~Tp~~l~~~l~--~~~~~~~~~~~vViDEah~~~~~~-- 195 (410)
T 2j0s_A 121 IQKGLLALGDYMNVQCHACIGGTNVGEDIRK-LDYGQHVVAGTPGRVFDMIR--RRSLRTRAIKMLVLDEADEMLNKG-- 195 (410)
T ss_dssp HHHHHHHHTTTTTCCEEEECTTSCHHHHHHH-HHHCCSEEEECHHHHHHHHH--TTSSCCTTCCEEEEETHHHHTSTT--
T ss_pred HHHHHHHHhccCCeEEEEEECCCCHHHHHHH-hhcCCCEEEcCHHHHHHHHH--hCCccHhheeEEEEccHHHHHhhh--
Confidence 99999886 4777777777766443333 33457999999999987766 344456779999999999999988
Q ss_pred cHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEc---cCCCCCcEEEEeecCCcc
Q 004098 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT---SFFRPNLRFSVKHSKTSS 381 (774)
Q Consensus 305 fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~---~~~r~~l~~~v~~~~~~~ 381 (774)
|...+..+ +..+++..+++++|||++..+.+.+...+. .+..+.. ....+++.........
T Consensus 196 ~~~~~~~i-----------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-- 259 (410)
T 2j0s_A 196 FKEQIYDV-----------YRYLPPATQVVLISATLPHEILEMTNKFMT---DPIRILVKRDELTLEGIKQFFVAVER-- 259 (410)
T ss_dssp THHHHHHH-----------HTTSCTTCEEEEEESCCCHHHHTTGGGTCS---SCEEECCCGGGCSCTTEEEEEEEESS--
T ss_pred hHHHHHHH-----------HHhCccCceEEEEEcCCCHHHHHHHHHHcC---CCEEEEecCccccCCCceEEEEEeCc--
Confidence 78777666 233445789999999998876553333222 1111100 0001111110000000
Q ss_pred chhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhh
Q 004098 382 RASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLE 461 (774)
Q Consensus 382 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 461 (774)
T Consensus 260 -------------------------------------------------------------------------------- 259 (410)
T 2j0s_A 260 -------------------------------------------------------------------------------- 259 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEE
Q 004098 462 NDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541 (774)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~ 541 (774)
...+...+.+++.. ...+++||||++++.++.+++.|...|+.+..
T Consensus 260 ---------------------------------~~~k~~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ 305 (410)
T 2j0s_A 260 ---------------------------------EEWKFDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMREANFTVSS 305 (410)
T ss_dssp ---------------------------------TTHHHHHHHHHHHH-HTSSEEEEECSSHHHHHHHHHHHHHTTCCCEE
T ss_pred ---------------------------------HHhHHHHHHHHHHh-cCCCcEEEEEcCHHHHHHHHHHHHhCCCceEE
Confidence 00011222222222 24568999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 542 YNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 542 ~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
+||++++++|..++++|++|+.+|||||+++++|||+|++++||+||+|++...|+||+|||||.|+.|.|++|++..+
T Consensus 306 ~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 384 (410)
T 2j0s_A 306 MHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDD 384 (410)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGG
T ss_pred eeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997544
No 8
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.5e-48 Score=430.02 Aligned_cols=330 Identities=18% Similarity=0.238 Sum_probs=263.7
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc------CCeEEEEccchHHHHH
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLISLMHD 228 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~------~~~~LVvsPt~~L~~q 228 (774)
..+++.+.+.|. .+||..|+|+|.++++.+++++|+++.+|||+|||++|++|++.. ++++|||+|+++|+.|
T Consensus 13 ~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q 91 (391)
T 1xti_A 13 FLLKPELLRAIV-DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQ 91 (391)
T ss_dssp GCCCHHHHHHHH-HHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHH
T ss_pred cCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHH
Confidence 356788899998 479999999999999999999999999999999999999999853 5699999999999999
Q ss_pred HHHHHHhc-----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCC
Q 004098 229 QCSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303 (774)
Q Consensus 229 q~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~ 303 (774)
+.+.+.++ ++.+..+.++.........+..+.++|+|+||++|..++. .....+.++++|||||||++.+| +
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~--~~~~~~~~~~~vViDEaH~~~~~-~ 168 (391)
T 1xti_A 92 ISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALAR--NKSLNLKHIKHFILDECDKMLEQ-L 168 (391)
T ss_dssp HHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHH--TTSSCCTTCSEEEECSHHHHTSS-H
T ss_pred HHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHH--cCCccccccCEEEEeCHHHHhhc-c
Confidence 99999886 7888889888877665555666778999999999987665 33345678999999999999876 2
Q ss_pred CcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCC---CCCcEEEEeecCCc
Q 004098 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFF---RPNLRFSVKHSKTS 380 (774)
Q Consensus 304 ~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~---r~~l~~~v~~~~~~ 380 (774)
.|+..+..+. ...+...+++++|||++......+...+..+ ..+...... ..++......
T Consensus 169 ~~~~~~~~~~-----------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---- 231 (391)
T 1xti_A 169 DMRRDVQEIF-----------RMTPHEKQVMMFSATLSKEIRPVCRKFMQDP--MEIFVDDETKLTLHGLQQYYVK---- 231 (391)
T ss_dssp HHHHHHHHHH-----------HTSCSSSEEEEEESSCCSTHHHHHHHHCSSC--EEEECCCCCCCCCTTCEEEEEE----
T ss_pred chHHHHHHHH-----------hhCCCCceEEEEEeeCCHHHHHHHHHHcCCC--eEEEecCccccCcccceEEEEE----
Confidence 2666666552 2233478999999999988877666666421 111111100 0111111000
Q ss_pred cchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhh
Q 004098 381 SRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFL 460 (774)
Q Consensus 381 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 460 (774)
T Consensus 232 -------------------------------------------------------------------------------- 231 (391)
T 1xti_A 232 -------------------------------------------------------------------------------- 231 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceE
Q 004098 461 ENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAA 540 (774)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~ 540 (774)
.....+...+.+++... ..+++||||++++.++.+++.|...|+.+.
T Consensus 232 --------------------------------~~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~ 278 (391)
T 1xti_A 232 --------------------------------LKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAI 278 (391)
T ss_dssp --------------------------------CCGGGHHHHHHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEE
T ss_pred --------------------------------cCchhHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEE
Confidence 00111222333333332 567999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeC
Q 004098 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL 618 (774)
Q Consensus 541 ~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~ 618 (774)
.+||++++++|..++++|++|+.+|||||+++++|||+|++++||+|++|+|+..|+||+||+||.|+.|.|++|++.
T Consensus 279 ~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~ 356 (391)
T 1xti_A 279 AIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 356 (391)
T ss_dssp EECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECS
T ss_pred EEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999864
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1e-48 Score=436.52 Aligned_cols=332 Identities=19% Similarity=0.237 Sum_probs=249.1
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc------cCCeEEEEccchHHHH
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMH 227 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~------~~~~~LVvsPt~~L~~ 227 (774)
...+.+.+.+.|+ .+|+..|+++|.++|+.+++|+|+++.+|||+|||++|++|++. .++++|||+||++|+.
T Consensus 44 ~~~l~~~~~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 122 (414)
T 3eiq_A 44 DMNLSESLLRGIY-AYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQ 122 (414)
T ss_dssp GGCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHH
T ss_pred hCCCCHHHHHHHH-HcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHH
Confidence 3467788889998 57999999999999999999999999999999999999999975 4678999999999999
Q ss_pred HHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCC
Q 004098 228 DQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303 (774)
Q Consensus 228 qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~ 303 (774)
|+.+.+.++ ++.+..+.++.........+..+.++|+|+||++|.+++. ........+++|||||||++.+|+
T Consensus 123 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~--~~~~~~~~~~~vViDEah~~~~~~- 199 (414)
T 3eiq_A 123 QIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLN--RRYLSPKYIKMFVLDEADEMLSRG- 199 (414)
T ss_dssp HHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHH--HTSSCSTTCCEEEECSHHHHHHTT-
T ss_pred HHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHH--cCCcccccCcEEEEECHHHhhccC-
Confidence 999999886 5677777777766555555555788999999999988776 444556779999999999999888
Q ss_pred CcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEcc---CCCCCcEEEEeecCCc
Q 004098 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTS---FFRPNLRFSVKHSKTS 380 (774)
Q Consensus 304 ~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~---~~r~~l~~~v~~~~~~ 380 (774)
|...+..+ +..++++.++++||||++..+...+...+.- +..+... ...+.+.......
T Consensus 200 -~~~~~~~~-----------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--- 261 (414)
T 3eiq_A 200 -FKDQIYDI-----------FQKLNSNTQVVLLSATMPSDVLEVTKKFMRD---PIRILVKKEELTLEGIRQFYINV--- 261 (414)
T ss_dssp -THHHHHHH-----------HTTSCTTCEEEEECSCCCHHHHHHHTTTCSS---CEEECCCCCCCCTTSCCEEEEEC---
T ss_pred -cHHHHHHH-----------HHhCCCCCeEEEEEEecCHHHHHHHHHHcCC---CEEEEecCCccCCCCceEEEEEe---
Confidence 77776665 3334558899999999998877655444421 1111100 0000000000000
Q ss_pred cchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhh
Q 004098 381 SRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFL 460 (774)
Q Consensus 381 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 460 (774)
T Consensus 262 -------------------------------------------------------------------------------- 261 (414)
T 3eiq_A 262 -------------------------------------------------------------------------------- 261 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceE
Q 004098 461 ENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAA 540 (774)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~ 540 (774)
.....+...+..++.. ...+++||||++++.++.+++.|...++.+.
T Consensus 262 --------------------------------~~~~~~~~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~ 308 (414)
T 3eiq_A 262 --------------------------------EREEWKLDTLCDLYET-LTITQAVIFINTRRKVDWLTEKMHARDFTVS 308 (414)
T ss_dssp --------------------------------SSSTTHHHHHHHHHHS-SCCSSCEEECSCHHHHHHHHHHHHTTTCCCE
T ss_pred --------------------------------ChHHhHHHHHHHHHHh-CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEE
Confidence 0000122222333322 3567899999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 541 ~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
.+||+|++++|..+++.|++|+.+|||||+++++|||+|++++||+|+.|.|...|+||+|||||.|+.|.|++|++..+
T Consensus 309 ~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 388 (414)
T 3eiq_A 309 AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 388 (414)
T ss_dssp EC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTH
T ss_pred EecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997543
No 10
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.3e-47 Score=422.53 Aligned_cols=331 Identities=20% Similarity=0.289 Sum_probs=260.4
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc------cCCeEEEEccchHHHH
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMH 227 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~------~~~~~LVvsPt~~L~~ 227 (774)
...+.+.+.+.|. .+||..|+|+|.++++.+++++|+++.+|||+|||++|++|++. .+.++|||+|+++|+.
T Consensus 25 ~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 103 (400)
T 1s2m_A 25 DFYLKRELLMGIF-EAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELAL 103 (400)
T ss_dssp GGCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHH
T ss_pred hcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHH
Confidence 3457788889998 57999999999999999999999999999999999999999985 3568999999999999
Q ss_pred HHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCC
Q 004098 228 DQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303 (774)
Q Consensus 228 qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~ 303 (774)
|+.+.+.++ ++.+..+.++..... ........++|+|+||++|.+++. .....+.++++|||||||++.+.+
T Consensus 104 q~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~Ivv~T~~~l~~~~~--~~~~~~~~~~~vIiDEaH~~~~~~- 179 (400)
T 1s2m_A 104 QTSQVVRTLGKHCGISCMVTTGGTNLRD-DILRLNETVHILVGTPGRVLDLAS--RKVADLSDCSLFIMDEADKMLSRD- 179 (400)
T ss_dssp HHHHHHHHHTTTTTCCEEEECSSSCHHH-HHHHTTSCCSEEEECHHHHHHHHH--TTCSCCTTCCEEEEESHHHHSSHH-
T ss_pred HHHHHHHHHhcccCceEEEEeCCcchHH-HHHHhcCCCCEEEEchHHHHHHHH--hCCcccccCCEEEEeCchHhhhhc-
Confidence 999999885 677888877766543 223345678999999999987665 333456789999999999997654
Q ss_pred CcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceE-EEccCCCCCcEEEEeecCCccc
Q 004098 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKF-VLTSFFRPNLRFSVKHSKTSSR 382 (774)
Q Consensus 304 ~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~-~~~~~~r~~l~~~v~~~~~~~~ 382 (774)
|...+..+ +..+++..+++++|||++..+.+.+...+..+ ..+ .......+++........
T Consensus 180 -~~~~~~~i-----------~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---- 241 (400)
T 1s2m_A 180 -FKTIIEQI-----------LSFLPPTHQSLLFSATFPLTVKEFMVKHLHKP--YEINLMEELTLKGITQYYAFVE---- 241 (400)
T ss_dssp -HHHHHHHH-----------HTTSCSSCEEEEEESCCCHHHHHHHHHHCSSC--EEESCCSSCBCTTEEEEEEECC----
T ss_pred -hHHHHHHH-----------HHhCCcCceEEEEEecCCHHHHHHHHHHcCCC--eEEEeccccccCCceeEEEEec----
Confidence 66665555 22334578999999999998888777776532 110 001111111111111000
Q ss_pred hhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhc
Q 004098 383 ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (774)
Q Consensus 383 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (774)
T Consensus 242 -------------------------------------------------------------------------------- 241 (400)
T 1s2m_A 242 -------------------------------------------------------------------------------- 241 (400)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEe
Q 004098 463 DSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAY 542 (774)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~ 542 (774)
...+...+..++.. ...+++||||++++.++.+++.|...|+.+..+
T Consensus 242 --------------------------------~~~k~~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~ 288 (400)
T 1s2m_A 242 --------------------------------ERQKLHCLNTLFSK-LQINQAIIFCNSTNRVELLAKKITDLGYSCYYS 288 (400)
T ss_dssp --------------------------------GGGHHHHHHHHHHH-SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEE
T ss_pred --------------------------------hhhHHHHHHHHHhh-cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEe
Confidence 00111112222222 256799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 543 NASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 543 h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
||+|++++|..+++.|++|+.+|||||+++++|||+|++++||+|++|+|+..|+||+|||||.|+.|.|++|++..+
T Consensus 289 ~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~ 366 (400)
T 1s2m_A 289 HARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWND 366 (400)
T ss_dssp CTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGG
T ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997544
No 11
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.9e-47 Score=411.36 Aligned_cols=316 Identities=20% Similarity=0.312 Sum_probs=252.6
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhc-
Q 004098 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKH- 236 (774)
Q Consensus 158 ~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~- 236 (774)
++.+.+.|+ .+||..|+|+|.++++.+++++++++.+|||+|||++|++|++..+.++|||+|+++|+.|+++.+.++
T Consensus 2 ~~~i~~~l~-~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 2 NEKIEQAIR-EMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIG 80 (337)
T ss_dssp CHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 467788888 689999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ---CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHH
Q 004098 237 ---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLS 313 (774)
Q Consensus 237 ---gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~ 313 (774)
++.+..+.++.........+ ..++|+|+||++|.+++. .....+.++++|||||||++.+|+ |...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~v~T~~~l~~~~~--~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~~~ 154 (337)
T 2z0m_A 81 RYMDTKVAEVYGGMPYKAQINRV--RNADIVVATPGRLLDLWS--KGVIDLSSFEIVIIDEADLMFEMG--FIDDIKIIL 154 (337)
T ss_dssp TTSCCCEEEECTTSCHHHHHHHH--TTCSEEEECHHHHHHHHH--TTSCCGGGCSEEEEESHHHHHHTT--CHHHHHHHH
T ss_pred hhcCCcEEEEECCcchHHHHhhc--CCCCEEEECHHHHHHHHH--cCCcchhhCcEEEEEChHHhhccc--cHHHHHHHH
Confidence 47788888877665433333 237999999999987665 334456789999999999999988 777666552
Q ss_pred HHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHH
Q 004098 314 VLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLI 393 (774)
Q Consensus 314 ~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~ 393 (774)
..+ +...+++++|||++....+.+...+.. ...+......+++.........
T Consensus 155 ---~~~--------~~~~~~~~~SAT~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-------------- 206 (337)
T 2z0m_A 155 ---AQT--------SNRKITGLFSATIPEEIRKVVKDFITN---YEEIEACIGLANVEHKFVHVKD-------------- 206 (337)
T ss_dssp ---HHC--------TTCSEEEEEESCCCHHHHHHHHHHSCS---CEEEECSGGGGGEEEEEEECSS--------------
T ss_pred ---hhC--------CcccEEEEEeCcCCHHHHHHHHHhcCC---ceeeecccccCCceEEEEEeCh--------------
Confidence 222 236778899999999888777766642 2222222222222221111100
Q ss_pred HHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccc
Q 004098 394 DIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACG 473 (774)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 473 (774)
T Consensus 207 -------------------------------------------------------------------------------- 206 (337)
T 2z0m_A 207 -------------------------------------------------------------------------------- 206 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHH
Q 004098 474 EFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRR 553 (774)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~ 553 (774)
.....+..+.. ...+++||||++++.++.+++.|. .+..+||++++.+|.+
T Consensus 207 ------------------------~~~~~~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~ 257 (337)
T 2z0m_A 207 ------------------------DWRSKVQALRE-NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNR 257 (337)
T ss_dssp ------------------------SSHHHHHHHHT-CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHH
T ss_pred ------------------------HHHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHH
Confidence 00011111111 256789999999999999999886 6889999999999999
Q ss_pred HHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEee
Q 004098 554 VHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617 (774)
Q Consensus 554 ~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~ 617 (774)
++++|++|+.+|||||+++++|||+|++++||+|++|+|+..|+||+|||||.|+.|.|++|+.
T Consensus 258 ~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 258 NIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp HHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred HHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999987
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=6e-47 Score=418.97 Aligned_cols=328 Identities=19% Similarity=0.258 Sum_probs=255.1
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEecCCCchHHHHHHhhhc------cCCeEEEEccchHH
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISL 225 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g--~d~lv~apTGsGKTl~~~lpal~------~~~~~LVvsPt~~L 225 (774)
..++++.+.+.|. .+|+..|+|+|.++++.++++ +|+++++|||+|||++|++|++. .++++|||+|+++|
T Consensus 9 ~~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 87 (395)
T 3pey_A 9 ELGLAPELLKGIY-AMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSREL 87 (395)
T ss_dssp TSCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHH
T ss_pred hCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHH
Confidence 4567888999998 579999999999999999998 99999999999999999999875 36799999999999
Q ss_pred HHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc-
Q 004098 226 MHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK- 300 (774)
Q Consensus 226 ~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~- 300 (774)
+.|+.+.+.++ ++.+....++..... ....++|+|+||++|.+++. .....+.++++|||||||++.+
T Consensus 88 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~iiv~T~~~l~~~~~--~~~~~~~~~~~iIiDEah~~~~~ 160 (395)
T 3pey_A 88 ARQTLEVVQEMGKFTKITSQLIVPDSFEKN-----KQINAQVIVGTPGTVLDLMR--RKLMQLQKIKIFVLDEADNMLDQ 160 (395)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEESTTSSCTT-----SCBCCSEEEECHHHHHHHHH--TTCBCCTTCCEEEEETHHHHHHS
T ss_pred HHHHHHHHHHHhcccCeeEEEEecCchhhh-----ccCCCCEEEEcHHHHHHHHH--cCCcccccCCEEEEEChhhhcCc
Confidence 99999999985 456666666543321 12357999999999987765 3444567899999999999987
Q ss_pred CCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCc
Q 004098 301 WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTS 380 (774)
Q Consensus 301 ~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~ 380 (774)
++ |...+..+.. .++.+.+++++|||++..+...+...+...............+.+.........
T Consensus 161 ~~--~~~~~~~~~~-----------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 226 (395)
T 3pey_A 161 QG--LGDQCIRVKR-----------FLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKN- 226 (395)
T ss_dssp TT--HHHHHHHHHH-----------TSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSS-
T ss_pred cc--cHHHHHHHHH-----------hCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCc-
Confidence 55 6766666522 233478999999999988777666555422100000111111222111111000
Q ss_pred cchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhh
Q 004098 381 SRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFL 460 (774)
Q Consensus 381 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 460 (774)
T Consensus 227 -------------------------------------------------------------------------------- 226 (395)
T 3pey_A 227 -------------------------------------------------------------------------------- 226 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceE
Q 004098 461 ENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAA 540 (774)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~ 540 (774)
.......+..+......+++||||++++.++.+++.|...++.+.
T Consensus 227 -----------------------------------~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~ 271 (395)
T 3pey_A 227 -----------------------------------EADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVS 271 (395)
T ss_dssp -----------------------------------HHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCE
T ss_pred -----------------------------------hHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEE
Confidence 000111122222233567999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCC------CHHHHHHHhhccccCCCcceEEE
Q 004098 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ------SLEAYYQEAGRAGRDGHLADCVL 614 (774)
Q Consensus 541 ~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~------s~~~y~Qr~GRaGR~G~~g~~il 614 (774)
.+||+|++++|.+++++|++|+.+|||||+++++|||+|++++||+||+|+ |+..|+||+|||||.|+.|.|++
T Consensus 272 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~ 351 (395)
T 3pey_A 272 ILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAIS 351 (395)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEE
T ss_pred EeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEE
Confidence 999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred EeeC
Q 004098 615 YANL 618 (774)
Q Consensus 615 ~~~~ 618 (774)
|++.
T Consensus 352 ~~~~ 355 (395)
T 3pey_A 352 FVHD 355 (395)
T ss_dssp EECS
T ss_pred EEec
Confidence 9863
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.9e-46 Score=409.21 Aligned_cols=326 Identities=20% Similarity=0.305 Sum_probs=260.8
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC-CCEEEEecCCCchHHHHHHhhhc-----cCCeEEEEccchHHHHH
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAH-HDCLVLAATGSGKSLCFQIPALL-----TGKVVVVISPLISLMHD 228 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g-~d~lv~apTGsGKTl~~~lpal~-----~~~~~LVvsPt~~L~~q 228 (774)
.++.+.+.+.|+ .+||..|+|+|.++++.++++ +++++.+|||+|||++|++|++. .+.++|||+|+++|+.|
T Consensus 11 ~~l~~~~~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 89 (367)
T 1hv8_A 11 LNLSDNILNAIR-NKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQ 89 (367)
T ss_dssp SSCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHH
T ss_pred cCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHH
Confidence 457788999998 569999999999999999988 69999999999999999999875 36799999999999999
Q ss_pred HHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCC
Q 004098 229 QCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (774)
Q Consensus 229 q~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~ 304 (774)
+.+.+.++ ++.+..+.++.........+. .++|+|+||++|.+.+. .....+.++++|||||||++.+|+
T Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~iiv~T~~~l~~~~~--~~~~~~~~~~~iIiDEah~~~~~~-- 163 (367)
T 1hv8_A 90 VADEIESLKGNKNLKIAKIYGGKAIYPQIKALK--NANIVVGTPGRILDHIN--RGTLNLKNVKYFILDEADEMLNMG-- 163 (367)
T ss_dssp HHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH--TCSEEEECHHHHHHHHH--TTCSCTTSCCEEEEETHHHHHTTT--
T ss_pred HHHHHHHHhCCCCceEEEEECCcchHHHHhhcC--CCCEEEecHHHHHHHHH--cCCcccccCCEEEEeCchHhhhhc--
Confidence 99999885 577888887776644333333 57999999999987665 333446789999999999999888
Q ss_pred cHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchh
Q 004098 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRAS 384 (774)
Q Consensus 305 fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~ 384 (774)
|...+..+.. .+++..+++++|||++......+...++. ...... ....++.......
T Consensus 164 ~~~~~~~~~~-----------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~------- 221 (367)
T 1hv8_A 164 FIKDVEKILN-----------ACNKDKRILLFSATMPREILNLAKKYMGD---YSFIKA-KINANIEQSYVEV------- 221 (367)
T ss_dssp THHHHHHHHH-----------TSCSSCEEEEECSSCCHHHHHHHHHHCCS---EEEEEC-CSSSSSEEEEEEC-------
T ss_pred hHHHHHHHHH-----------hCCCCceEEEEeeccCHHHHHHHHHHcCC---CeEEEe-cCCCCceEEEEEe-------
Confidence 7776666522 22347899999999999887777666642 121111 1111221111110
Q ss_pred hhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCC
Q 004098 385 YKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDS 464 (774)
Q Consensus 385 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (774)
T Consensus 222 -------------------------------------------------------------------------------- 221 (367)
T 1hv8_A 222 -------------------------------------------------------------------------------- 221 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecC
Q 004098 465 VDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544 (774)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~ 544 (774)
....+...+...+.. ...++||||++++.++.+++.|...|+.+..+||
T Consensus 222 -----------------------------~~~~~~~~l~~~l~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~ 270 (367)
T 1hv8_A 222 -----------------------------NENERFEALCRLLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHG 270 (367)
T ss_dssp -----------------------------CGGGHHHHHHHHHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECS
T ss_pred -----------------------------ChHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeC
Confidence 001122223333332 4568999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 545 ~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
++++++|..+++.|++|+.+|||||+++++|+|+|++++||+|+.|+|+..|+||+|||||.|++|.|++|++..+
T Consensus 271 ~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 346 (367)
T 1hv8_A 271 DLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRRE 346 (367)
T ss_dssp SSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTS
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997554
No 14
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=5.6e-46 Score=413.91 Aligned_cols=327 Identities=19% Similarity=0.208 Sum_probs=252.0
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEecCCCchHHHHHHhhhc------cCCeEEEEccchHH
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISL 225 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g--~d~lv~apTGsGKTl~~~lpal~------~~~~~LVvsPt~~L 225 (774)
...+++.+.+.|+ .+||..|+|+|.++++.++++ +|++++||||+|||++|++|++. .++++|||+||++|
T Consensus 29 ~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 107 (412)
T 3fht_A 29 ELRLKPQLLQGVY-AMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYEL 107 (412)
T ss_dssp GGTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred hCCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHH
Confidence 3467788999998 579999999999999999987 99999999999999999999874 24589999999999
Q ss_pred HHHHHHHHHhc-----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc
Q 004098 226 MHDQCSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (774)
Q Consensus 226 ~~qq~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~ 300 (774)
+.|+.+.+.++ ++.+....++...... ....++|+|+||++|.+++.. .+...+.++++|||||||++.+
T Consensus 108 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~~iViDEah~~~~ 182 (412)
T 3fht_A 108 ALQTGKVIEQMGKFYPELKLAYAVRGNKLERG----QKISEQIVIGTPGTVLDWCSK-LKFIDPKKIKVFVLDEADVMIA 182 (412)
T ss_dssp HHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT----CCCCCSEEEECHHHHHHHHTT-SCSSCGGGCCEEEEETHHHHHS
T ss_pred HHHHHHHHHHHHhhcccceEEEeecCcchhhh----hcCCCCEEEECchHHHHHHHh-cCCcChhhCcEEEEeCHHHHhh
Confidence 99999888875 3566666665543211 134579999999999876642 1334457899999999999987
Q ss_pred -CCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEc---cCCCCCcEEEEee
Q 004098 301 -WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT---SFFRPNLRFSVKH 376 (774)
Q Consensus 301 -~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~---~~~r~~l~~~v~~ 376 (774)
++ |...+..+.. .++.+.+++++|||++..+...+...+... ..+.. ....+++......
T Consensus 183 ~~~--~~~~~~~~~~-----------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 246 (412)
T 3fht_A 183 TQG--HQDQSIRIQR-----------MLPRNCQMLLFSATFEDSVWKFAQKVVPDP---NVIKLKREEETLDTIKQYYVL 246 (412)
T ss_dssp TTT--THHHHHHHHH-----------TSCTTCEEEEEESCCCHHHHHHHHHHSSSC---EEECCCGGGSSCTTEEEEEEE
T ss_pred cCC--cHHHHHHHHh-----------hCCCCceEEEEEeecCHHHHHHHHHhcCCC---eEEeeccccccccCceEEEEE
Confidence 55 6666665522 233478999999999998887776666422 11111 1111111111111
Q ss_pred cCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchh
Q 004098 377 SKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMS 456 (774)
Q Consensus 377 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (774)
...
T Consensus 247 ~~~----------------------------------------------------------------------------- 249 (412)
T 3fht_A 247 CSS----------------------------------------------------------------------------- 249 (412)
T ss_dssp CSS-----------------------------------------------------------------------------
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 000
Q ss_pred hhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCC
Q 004098 457 VEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG 536 (774)
Q Consensus 457 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g 536 (774)
...+...+..++. ....+++||||++++.++.+++.|...+
T Consensus 250 --------------------------------------~~~~~~~l~~~~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~ 290 (412)
T 3fht_A 250 --------------------------------------RDEKFQALCNLYG-AITIAQAMIFCHTRKTASWLAAELSKEG 290 (412)
T ss_dssp --------------------------------------HHHHHHHHHHHHH-HHSSSEEEEECSSHHHHHHHHHHHHHTT
T ss_pred --------------------------------------hHHHHHHHHHHHh-hcCCCCEEEEeCCHHHHHHHHHHHHhCC
Confidence 0001111111111 1245689999999999999999999999
Q ss_pred CceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCC------CCHHHHHHHhhccccCCCcc
Q 004098 537 VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWP------QSLEAYYQEAGRAGRDGHLA 610 (774)
Q Consensus 537 ~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p------~s~~~y~Qr~GRaGR~G~~g 610 (774)
+.+..+||+|++++|..+++.|++|+.+|||||+++++|||+|++++||+||+| .+...|+||+|||||.|+.|
T Consensus 291 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g 370 (412)
T 3fht_A 291 HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRG 370 (412)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCE
T ss_pred CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999 57899999999999999999
Q ss_pred eEEEEeeC
Q 004098 611 DCVLYANL 618 (774)
Q Consensus 611 ~~il~~~~ 618 (774)
.|++|++.
T Consensus 371 ~~~~~~~~ 378 (412)
T 3fht_A 371 LAVNMVDS 378 (412)
T ss_dssp EEEEEECS
T ss_pred eEEEEEcC
Confidence 99999864
No 15
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=7.4e-48 Score=426.51 Aligned_cols=334 Identities=19% Similarity=0.259 Sum_probs=149.9
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc------cCCeEEEEccchHHHHH
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHD 228 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~------~~~~~LVvsPt~~L~~q 228 (774)
.++++.+.+.|. .+||..|+|+|.++++.+++|+|+++.+|||+|||++|++|++. .++++|||+|+++|+.|
T Consensus 26 ~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q 104 (394)
T 1fuu_A 26 MELDENLLRGVF-GYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQ 104 (394)
T ss_dssp GCCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHH
T ss_pred cCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHH
Confidence 467889999998 57999999999999999999999999999999999999999984 36799999999999999
Q ss_pred HHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCC
Q 004098 229 QCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (774)
Q Consensus 229 q~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~ 304 (774)
+.+.+.++ ++.+..+.++.........+. .++|+|+||++|.+.+. .......++++|||||||++.+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~i~v~T~~~l~~~~~--~~~~~~~~~~~vIiDEah~~~~~~-- 178 (394)
T 1fuu_A 105 IQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR--DAQIVVGTPGRVFDNIQ--RRRFRTDKIKMFILDEADEMLSSG-- 178 (394)
T ss_dssp HHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH--HCSEEEECHHHHHHHHH--TTSSCCTTCCEEEEETHHHHHHTT--
T ss_pred HHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC--CCCEEEECHHHHHHHHH--hCCcchhhCcEEEEEChHHhhCCC--
Confidence 99999875 578888888777644333333 46999999999987665 333445789999999999999888
Q ss_pred cHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchh
Q 004098 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRAS 384 (774)
Q Consensus 305 fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~ 384 (774)
|+..+..+... +++..+++++|||++..+.+.+...+..+ ..+. +......
T Consensus 179 ~~~~~~~~~~~-----------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~~~------------~~~~~~~---- 229 (394)
T 1fuu_A 179 FKEQIYQIFTL-----------LPPTTQVVLLSATMPNDVLEVTTKFMRNP--VRIL------------VKKDELT---- 229 (394)
T ss_dssp CHHHHHHHHHH-----------SCTTCEEEEECSSCCHHHHHHHHHHCCSC--EEEE------------ECC--------
T ss_pred cHHHHHHHHHh-----------CCCCceEEEEEEecCHHHHHHHHHhcCCC--eEEE------------ecCcccc----
Confidence 88877766322 23478999999999988777666665421 1111 1000000
Q ss_pred hhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCC
Q 004098 385 YKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDS 464 (774)
Q Consensus 385 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (774)
...+.+. +....
T Consensus 230 -~~~~~~~------------------------------------------------------------------~~~~~- 241 (394)
T 1fuu_A 230 -LEGIKQF------------------------------------------------------------------YVNVE- 241 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CCCceEE------------------------------------------------------------------EEEcC-
Confidence 0000000 00000
Q ss_pred CcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecC
Q 004098 465 VDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA 544 (774)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~ 544 (774)
....+...+.+ +......+++||||++++.++.+++.|...++.+..+||
T Consensus 242 -----------------------------~~~~~~~~l~~-~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~ 291 (394)
T 1fuu_A 242 -----------------------------EEEYKYECLTD-LYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYS 291 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------chhhHHHHHHH-HHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeC
Confidence 00000011111 111224568999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCCC
Q 004098 545 SLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622 (774)
Q Consensus 545 ~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~ 622 (774)
++++++|..+++.|++|+.+|||||+++++|||+|++++||+|++|+++..|+||+||+||.|++|.|++|++..+..
T Consensus 292 ~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 369 (394)
T 1fuu_A 292 DLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVG 369 (394)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876654
No 16
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=8.9e-47 Score=421.26 Aligned_cols=320 Identities=19% Similarity=0.246 Sum_probs=245.2
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHh
Q 004098 159 VKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSK 235 (774)
Q Consensus 159 ~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~ 235 (774)
+++.+.+++.+|+ +|+|+|.++++.+++|+|+++++|||+|||++|++|++. .++++|||+||++|+.|+++.+.+
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 86 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK 86 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHH
Confidence 4567788888999 799999999999999999999999999999999999876 688999999999999999999999
Q ss_pred c---CCcEEEEcCCCCh---HHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCC-------
Q 004098 236 H---GVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWG------- 302 (774)
Q Consensus 236 ~---gi~~~~l~~~~~~---~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g------- 302 (774)
+ ++++..++++... ......+..+.++|+|+||++|.+++. .+...++++|||||||++.+|+
T Consensus 87 ~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~----~~~~~~~~~iViDEaH~~~~~~~~~d~~l 162 (414)
T 3oiy_A 87 LADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNRE----KLSQKRFDFVFVDDVDAVLKASRNIDTLL 162 (414)
T ss_dssp HCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHH----HHTTCCCSEEEESCHHHHHHCHHHHHHHH
T ss_pred HccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHH----HhccccccEEEEeChHhhhhccchhhhHH
Confidence 4 7899999998877 333445556668999999999987765 2566789999999999998877
Q ss_pred --CCcHHH-HHHHHHHHHHhccccccccc--CCCCEEEEeccC-CHHHHHHHHHH-cCCCCCceEEEccCCCCCcEEEEe
Q 004098 303 --HDFRPD-YRRLSVLRENFGANNLKSLK--FDIPLMALTATA-TIQVREDILKS-LHMSKGTKFVLTSFFRPNLRFSVK 375 (774)
Q Consensus 303 --~~fr~~-~~~l~~l~~~~~~~~~~~l~--~~~~il~lTAT~-~~~~~~~i~~~-L~~~~~~~~~~~~~~r~~l~~~v~ 375 (774)
+.|.+. +..+......- ..+..++ +..|++++|||+ +..+...+... +++... ......+++.....
T Consensus 163 ~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~ 236 (414)
T 3oiy_A 163 MMVGIPEEIIRKAFSTIKQG--KIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVG----RLVSVARNITHVRI 236 (414)
T ss_dssp HHTTCCHHHHHHHHHHHHHT--CCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSS----CCCCCCCSEEEEEE
T ss_pred hhcCCcHHHHHHHHHhcccc--hhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcC----ccccccccchheee
Confidence 568877 55553332100 0111222 478999999995 43333233222 221100 00011111111111
Q ss_pred ecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccch
Q 004098 376 HSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEM 455 (774)
Q Consensus 376 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (774)
T Consensus 237 -------------------------------------------------------------------------------- 236 (414)
T 3oiy_A 237 -------------------------------------------------------------------------------- 236 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhC
Q 004098 456 SVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF 535 (774)
Q Consensus 456 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~ 535 (774)
...+...+.++|.. .+.++||||++++.++.+++.|...
T Consensus 237 ---------------------------------------~~~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~ 275 (414)
T 3oiy_A 237 ---------------------------------------SSRSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRF 275 (414)
T ss_dssp ---------------------------------------SSCCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHT
T ss_pred ---------------------------------------ccCHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHc
Confidence 00123333444433 2478999999999999999999999
Q ss_pred CCceE-EecCCCCHHHHHHHHHHHhcCCceEEEE----ecccccCcccCC-cceEEEeCCC--CCHHHHHHHhhccccCC
Q 004098 536 GVKAA-AYNASLPKSQLRRVHTEFHENKLEVVVA----TIAFGMGIDKLN-VRRIIHYGWP--QSLEAYYQEAGRAGRDG 607 (774)
Q Consensus 536 g~~~~-~~h~~l~~~~R~~~~~~F~~g~~~vLVA----T~a~~~GIDip~-V~~VI~~d~p--~s~~~y~Qr~GRaGR~G 607 (774)
|+.+. .|||. +|+ +++|++|+++|||| |+++++|||+|+ |++||+||+| .++..|+||+|||||.|
T Consensus 276 ~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g 349 (414)
T 3oiy_A 276 KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRIL 349 (414)
T ss_dssp TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEE
T ss_pred CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCC
Confidence 99998 99984 444 99999999999999 999999999999 9999999999 99999999999999998
Q ss_pred ----CcceEEEEe
Q 004098 608 ----HLADCVLYA 616 (774)
Q Consensus 608 ----~~g~~il~~ 616 (774)
+.|.|++|+
T Consensus 350 ~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 350 NGVLVKGVSVIFE 362 (414)
T ss_dssp TTEECCEEEEEEC
T ss_pred CCCCcceEEEEEE
Confidence 589999997
No 17
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.8e-47 Score=455.59 Aligned_cols=469 Identities=17% Similarity=0.180 Sum_probs=256.0
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc-----cC----CeEEEEccchHHHHHH-HHHHHhcC---Cc
Q 004098 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----TG----KVVVVISPLISLMHDQ-CSKLSKHG---VT 239 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~-----~~----~~~LVvsPt~~L~~qq-~~~l~~~g---i~ 239 (774)
.|||+|.++++++++|+|+|+++|||+|||++|++|++. .. +++|||+|+++|+.|| ++++.+++ +.
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 699999999999999999999999999999999999975 22 8999999999999999 99999864 78
Q ss_pred EEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHH----HHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHH
Q 004098 240 ACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKP----LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVL 315 (774)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~----~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l 315 (774)
+..++++......... ..+.++|+|+||++|.+.+.. ....+.+..+++|||||||++.. ++.+......+...
T Consensus 87 v~~~~g~~~~~~~~~~-~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~-~~~~~~i~~~~l~~ 164 (699)
T 4gl2_A 87 VIGLSGDTQLKISFPE-VVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK-EAVYNNIMRHYLMQ 164 (699)
T ss_dssp EEEEC----CCCCHHH-HHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT-TBSSCSHHHHHHHH
T ss_pred EEEEeCCcchhhHHHh-hhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc-cchHHHHHHHHHHh
Confidence 8888887655332222 235689999999999876631 13334567899999999999953 33344444433211
Q ss_pred H--HHhcccccccccCCCCEEEEeccCCHH-------HHHHH---HHHcCCCCCc------eEEEccCCCCCcEEEEeec
Q 004098 316 R--ENFGANNLKSLKFDIPLMALTATATIQ-------VREDI---LKSLHMSKGT------KFVLTSFFRPNLRFSVKHS 377 (774)
Q Consensus 316 ~--~~~~~~~~~~l~~~~~il~lTAT~~~~-------~~~~i---~~~L~~~~~~------~~~~~~~~r~~l~~~v~~~ 377 (774)
+ ..-....-....+.+++++||||+... ..+.+ ...|....-. ..+.....+|+..+.....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~ 244 (699)
T 4gl2_A 165 KLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADA 244 (699)
T ss_dssp HHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-
T ss_pred hhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEccc
Confidence 1 110000000011367899999999873 33333 3444321000 0111223455555544432
Q ss_pred CCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCcc-------CCCCC
Q 004098 378 KTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDED-------VGNSP 450 (774)
Q Consensus 378 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 450 (774)
.. ...+...+..+...+.......+. .... ...|.... .....
T Consensus 245 ~~--~~~~~~~l~~l~~~i~~~~~~~~~---------~~~g-------------------~~~~~~~~~~~~~~~~~~~~ 294 (699)
T 4gl2_A 245 TR--EDPFKEKLLEIMTRIQTYCQMSPM---------SDFG-------------------TQPYEQWAIQMEKKAAKEGN 294 (699)
T ss_dssp ------CHHHHHHHHHHHHHHHHTCCCC---------SCSS-------------------SHHHHHHHHHHHHHHHHHTC
T ss_pred cc--CChHHHHHHHHHHHHHHHhccCcc---------hhcc-------------------chHHHHHHHHHHHHHHHhhh
Confidence 21 123334444444333321100000 0000 00000000 00000
Q ss_pred CccchhhhhhhcC--------CCcccc--cccccccC--------------CCCCCCCCCccch---------------h
Q 004098 451 MGKEMSVEFLEND--------SVDDWD--VACGEFYG--------------HSPHRDRDTDRSF---------------E 491 (774)
Q Consensus 451 ~~~~~~~~~l~~~--------~~~~~~--~~~~~~~~--------------~~~~~~~~~~~~~---------------~ 491 (774)
.........+... ....+. .....++. ..+..-....... .
T Consensus 295 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 374 (699)
T 4gl2_A 295 RKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAE 374 (699)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 0000000000000 000000 00000000 0000000000000 0
Q ss_pred -hccccCchhHhhhhccCCC---C-CCcEEEEeCchHHHHHHHHHHHhC------CCceEEecCC--------CCHHHHH
Q 004098 492 -RTDLLNKPAERLSMLQEPL---E-DGLTIIYVPTRKETLSIAKYLCGF------GVKAAAYNAS--------LPKSQLR 552 (774)
Q Consensus 492 -~~~~~~k~~~ll~~L~~~~---~-~~~~IIF~~sr~~~~~l~~~L~~~------g~~~~~~h~~--------l~~~~R~ 552 (774)
......|...++++|.+.. + .+++||||++++.++.|+++|... |+++..|||+ |++.+|.
T Consensus 375 ~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~ 454 (699)
T 4gl2_A 375 NPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQK 454 (699)
T ss_dssp CCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHH
Confidence 0002234444444444322 2 679999999999999999999987 8999999999 9999999
Q ss_pred HHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCCCcc--------
Q 004098 553 RVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPTL-------- 624 (774)
Q Consensus 553 ~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~~~-------- 624 (774)
+++++|++|+++|||||+++++|||+|+|++|||||+|+|++.|+||+|||||.| +.+++++........
T Consensus 455 ~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~~~~~~~~~~~~~ 532 (699)
T 4gl2_A 455 EVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGSGVIERETVNDFR 532 (699)
T ss_dssp HHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSSCSHHHHHHHHHH
T ss_pred HHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988776 444555443332110
Q ss_pred -------CC--CCCCHHHHH-HHH-HHHHHHHHhccccchhHHHHHHHHcCCCCCCcCCCCCCC
Q 004098 625 -------LP--SRRSEDQTK-QAY-RMLSDCFRYGMNTSCCRAKILVEYFGEDFSHEKCQLCDV 677 (774)
Q Consensus 625 -------~~--~~~~~~~~~-~~~-~~l~~~~~y~~~~~~Crr~~l~~~f~~~~~~~~c~~Cd~ 677 (774)
++ .....+... +.. ..+..+..++ ....|+++..+.||++.. ...|++||+
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~i~~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~c~~c~~ 594 (699)
T 4gl2_A 533 EKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKK-MKTKRNIAKHYKNNPSLI-TFLCKNCSV 594 (699)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHCC-SCCC----------CCSE-EEEESSSCC
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH-HHHhhhHHhhhhcCccee-EEECCCCCc
Confidence 00 011111111 111 1234455565 677899999999999876 357888885
No 18
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.8e-46 Score=426.90 Aligned_cols=332 Identities=19% Similarity=0.225 Sum_probs=142.4
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEecCCCchHHHHHHhhhcc------CCeEEEEccchHH
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLISL 225 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g--~d~lv~apTGsGKTl~~~lpal~~------~~~~LVvsPt~~L 225 (774)
...+.+.+.+.|. .+||..|+|+|.++++.++++ +|+|++||||+|||++|++|++.. ++++|||+||++|
T Consensus 96 ~~~l~~~l~~~l~-~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~L 174 (479)
T 3fmp_B 96 ELRLKPQLLQGVY-AMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYEL 174 (479)
T ss_dssp GGTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHH
T ss_pred HcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHH
Confidence 3467788999998 489999999999999999987 999999999999999999999742 3489999999999
Q ss_pred HHHHHHHHHhc-----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc
Q 004098 226 MHDQCSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (774)
Q Consensus 226 ~~qq~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~ 300 (774)
+.|+.+.+.++ ++.+....++...... .....+|+|+||++|.+++.. .+.+.+.++++|||||||++++
T Consensus 175 a~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~~iViDEah~~~~ 249 (479)
T 3fmp_B 175 ALQTGKVIEQMGKFYPELKLAYAVRGNKLERG----QKISEQIVIGTPGTVLDWCSK-LKFIDPKKIKVFVLDEADVMIA 249 (479)
T ss_dssp HHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT----CCCCCSEEEECHHHHHHHHTT-SCCCCGGGCCEEEECCHHHHHT
T ss_pred HHHHHHHHHHHHhhCCCceEEEEeCCcccccc----ccCCCCEEEECchHHHHHHHh-cCCcCcccCCEEEEECHHHHhh
Confidence 99998888774 3556666655443211 133568999999999877642 1234567899999999999986
Q ss_pred -CCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCC
Q 004098 301 -WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKT 379 (774)
Q Consensus 301 -~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~ 379 (774)
++ |...+..+ +..++.+.|++++|||++..+.......+. .+..+........
T Consensus 250 ~~~--~~~~~~~i-----------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~---~~~~i~~~~~~~~---------- 303 (479)
T 3fmp_B 250 TQG--HQDQSIRI-----------QRMLPRNCQMLLFSATFEDSVWKFAQKVVP---DPNVIKLKREEET---------- 303 (479)
T ss_dssp STT--HHHHHHHH-----------HTTSCTTSEEEEEESCCCHHHHHHHHHHSS---SEEEEEEC---------------
T ss_pred cCC--cHHHHHHH-----------HhhCCccceEEEEeCCCCHHHHHHHHHHcC---CCeEEeccccccC----------
Confidence 55 66666655 223345789999999999988776665553 1221111000000
Q ss_pred ccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhh
Q 004098 380 SSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEF 459 (774)
Q Consensus 380 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (774)
...+.+..
T Consensus 304 ------~~~~~~~~------------------------------------------------------------------ 311 (479)
T 3fmp_B 304 ------LDTIKQYY------------------------------------------------------------------ 311 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------cCCceEEE------------------------------------------------------------------
Confidence 00000000
Q ss_pred hhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCce
Q 004098 460 LENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539 (774)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~ 539 (774)
+. | .....+...+..++ .....+++||||++++.++.+++.|...++.+
T Consensus 312 ~~----------~--------------------~~~~~~~~~l~~~~-~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v 360 (479)
T 3fmp_B 312 VL----------C--------------------SSRDEKFQALCNLY-GAITIAQAMIFCHTRKTASWLAAELSKEGHQV 360 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EE----------e--------------------CCHHHHHHHHHHHH-hhccCCceEEEeCcHHHHHHHHHHHHhCCccE
Confidence 00 0 00000111111111 11245689999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCC------CCHHHHHHHhhccccCCCcceEE
Q 004098 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWP------QSLEAYYQEAGRAGRDGHLADCV 613 (774)
Q Consensus 540 ~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p------~s~~~y~Qr~GRaGR~G~~g~~i 613 (774)
..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+||+| .+.+.|+||+|||||.|+.|.|+
T Consensus 361 ~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i 440 (479)
T 3fmp_B 361 ALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAV 440 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEE
Confidence 999999999999999999999999999999999999999999999999999 46789999999999999999999
Q ss_pred EEeeCCC
Q 004098 614 LYANLSS 620 (774)
Q Consensus 614 l~~~~~~ 620 (774)
+|++..+
T Consensus 441 ~~~~~~~ 447 (479)
T 3fmp_B 441 NMVDSKH 447 (479)
T ss_dssp -------
T ss_pred EEEcCcc
Confidence 9997654
No 19
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1e-46 Score=448.87 Aligned_cols=406 Identities=18% Similarity=0.234 Sum_probs=220.4
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc--------CCeEEEEccchHHHHHHHHHHHhc---
Q 004098 168 HFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT--------GKVVVVISPLISLMHDQCSKLSKH--- 236 (774)
Q Consensus 168 ~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~--------~~~~LVvsPt~~L~~qq~~~l~~~--- 236 (774)
.+|+..|||+|.++++++++|+|+|+++|||+|||++|++|++.. ++++|||+||++|+.||.+.+.++
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp TTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred ccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 679999999999999999999999999999999999999999732 279999999999999999999986
Q ss_pred -CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHH-HhcCccEEEEecccccccCCCCcHHHHHHHHH
Q 004098 237 -GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLA-ESRGIALFAIDEVHCVSKWGHDFRPDYRRLSV 314 (774)
Q Consensus 237 -gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~-~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~ 314 (774)
++.+..++++.........+. ..++|+|+||++|.+.+. ...+ .+.++++|||||||++.++. .+...+..+
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~L~~~l~--~~~~~~l~~~~~vViDEaH~~~~~~-~~~~i~~~~-- 161 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQIV-ENNDIIILTPQILVNNLK--KGTIPSLSIFTLMIFDECHNTSKQH-PYNMIMFNY-- 161 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHHHH-HTCSEEEECHHHHHHHHH--TTSSCCGGGCSEEEEETGGGCSTTC-HHHHHHHHH--
T ss_pred CCceEEEEeCCccccccHHHhc-cCCCEEEECHHHHHHHHh--cCcccccccccEEEEeCCCcccCcc-cHHHHHHHH--
Confidence 788999988875432222222 357999999999988765 3333 46789999999999998653 233222211
Q ss_pred HHHHhcccccccccCCCCEEEEeccCC-------HHHHHHHHHHcCCCCCceEEEcc----------CCCCCcEEEEeec
Q 004098 315 LRENFGANNLKSLKFDIPLMALTATAT-------IQVREDILKSLHMSKGTKFVLTS----------FFRPNLRFSVKHS 377 (774)
Q Consensus 315 l~~~~~~~~~~~l~~~~~il~lTAT~~-------~~~~~~i~~~L~~~~~~~~~~~~----------~~r~~l~~~v~~~ 377 (774)
+...+. ...++..++++||||+. .+..+.+...+...... ++... ...|...+....
T Consensus 162 l~~~~~----~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~-~~~~~~~~~~~l~~~~~~p~~~~~~~~- 235 (696)
T 2ykg_A 162 LDQKLG----GSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDAS-VIATVKHNLEELEQVVYKPQKFFRKVE- 235 (696)
T ss_dssp HHHHHT----TCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCC-EEECCCTTHHHHHHHSCCCEEEEEECC-
T ss_pred HHHhhc----ccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCc-eEeecccchHHHHhhcCCCceeEEecC-
Confidence 222221 11234688999999998 56666666555322111 11110 111222221111
Q ss_pred CCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhh
Q 004098 378 KTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSV 457 (774)
Q Consensus 378 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (774)
......+...+..+................. +. .............
T Consensus 236 -~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~----~~-----------------------------~~~~~~~~~~~~~ 281 (696)
T 2ykg_A 236 -SRISDKFKYIIAQLMRDTESLAKRICKDLEN----LS-----------------------------QIQNREFGTQKYE 281 (696)
T ss_dssp -CCSCCHHHHHHHHHHHHHHHHHHHHSTTGGG----SS-----------------------------SCCSCCSSSHHHH
T ss_pred -cccCChHHHHHHHHHHHHHHHHHHHHHHHHH----hh-----------------------------ccccccccchhHH
Confidence 1111122222221111111000000000000 00 0000000000001
Q ss_pred hhhhc----CCCccc------ccccc--------------------------------cccCC-CCCCCCCCccchhh--
Q 004098 458 EFLEN----DSVDDW------DVACG--------------------------------EFYGH-SPHRDRDTDRSFER-- 492 (774)
Q Consensus 458 ~~l~~----~~~~~~------~~~~~--------------------------------~~~~~-~~~~~~~~~~~~~~-- 492 (774)
.++.. ....+. ...|. .++.. .........+....
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 361 (696)
T 2ykg_A 282 QWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRF 361 (696)
T ss_dssp HHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 11000 000000 00000 00000 00000000000000
Q ss_pred --------------ccccCchhHhhhhccCC---CCCCcEEEEeCchHHHHHHHHHHHhCC----CceEEe--------c
Q 004098 493 --------------TDLLNKPAERLSMLQEP---LEDGLTIIYVPTRKETLSIAKYLCGFG----VKAAAY--------N 543 (774)
Q Consensus 493 --------------~~~~~k~~~ll~~L~~~---~~~~~~IIF~~sr~~~~~l~~~L~~~g----~~~~~~--------h 543 (774)
.....+...+.++|.+. ..++++||||+++..++.+++.|...+ +++..+ |
T Consensus 362 ~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h 441 (696)
T 2ykg_A 362 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 441 (696)
T ss_dssp HTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC----------
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccc
Confidence 01334555566666544 256799999999999999999999988 889888 5
Q ss_pred CCCCHHHHHHHHHHHhc-CCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCC
Q 004098 544 ASLPKSQLRRVHTEFHE-NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (774)
Q Consensus 544 ~~l~~~~R~~~~~~F~~-g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~ 621 (774)
|+|++++|.+++++|++ |+++|||||+++++|||+|+|++|||||+|+|++.|+||+|| ||. +.|.|+++++..+.
T Consensus 442 ~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 442 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGV 518 (696)
T ss_dssp -------------------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHH
T ss_pred cCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCH
Confidence 59999999999999998 999999999999999999999999999999999999999999 998 78999999876554
No 20
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.4e-45 Score=445.78 Aligned_cols=438 Identities=17% Similarity=0.215 Sum_probs=270.3
Q ss_pred HhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHhc--CCcEE
Q 004098 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKH--GVTAC 241 (774)
Q Consensus 167 ~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~~--gi~~~ 241 (774)
..|+|. |+|+|.++|+.+++|+|++|+||||+|||++|++|+.. .++++||++|+++|+.|+++.+.++ ++.+.
T Consensus 34 ~~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~ 112 (997)
T 4a4z_A 34 RSWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIG 112 (997)
T ss_dssp CCCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEE
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEE
Confidence 467884 99999999999999999999999999999998888763 5788999999999999999999985 67888
Q ss_pred EEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcc
Q 004098 242 FLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGA 321 (774)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~ 321 (774)
.++|+... .+..+|+|+||++|.+++. .....+.++++|||||||++.+|+ |...+..+.
T Consensus 113 ~l~G~~~~--------~~~~~IlV~Tpe~L~~~l~--~~~~~l~~l~lvViDEaH~l~d~~--~g~~~e~ii-------- 172 (997)
T 4a4z_A 113 LITGDVQI--------NPDANCLIMTTEILRSMLY--RGADLIRDVEFVIFDEVHYVNDQD--RGVVWEEVI-------- 172 (997)
T ss_dssp EECSSCEE--------CTTSSEEEEEHHHHHHHHH--HTCSGGGGEEEEEECCTTCCCTTC--TTCCHHHHH--------
T ss_pred EEeCCCcc--------CCCCCEEEECHHHHHHHHH--hCchhhcCCCEEEEECcccccccc--hHHHHHHHH--------
Confidence 88887643 2457999999999987765 333446789999999999999988 555555552
Q ss_pred cccccccCCCCEEEEeccCCHHHHHHHHHHcCCC--CCceEEEccCCCCCcEEEEeecCCcc------chhhhHhHHHHH
Q 004098 322 NNLKSLKFDIPLMALTATATIQVREDILKSLHMS--KGTKFVLTSFFRPNLRFSVKHSKTSS------RASYKKDFCQLI 393 (774)
Q Consensus 322 ~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~--~~~~~~~~~~~r~~l~~~v~~~~~~~------~~~~~~~l~~l~ 393 (774)
..+++++++++||||++... ++..+++.. ....++...+...++...+....... .......+....
T Consensus 173 ---~~l~~~v~iIlLSAT~~n~~--ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (997)
T 4a4z_A 173 ---IMLPQHVKFILLSATVPNTY--EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHK 247 (997)
T ss_dssp ---HHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHH
T ss_pred ---HhcccCCCEEEEcCCCCChH--HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHH
Confidence 22345899999999987543 455555421 23455556666666665554321110 001111122211
Q ss_pred HHHHhhhcccccccc----------cC-----CCcC----CC-ccCccCCCcccccccCCCCCCCCCCCCccCCCCCCcc
Q 004098 394 DIYTKKKKTGEKEKS----------AI-----PQDL----DD-QSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGK 453 (774)
Q Consensus 394 ~~~~~~~~~~~~~~~----------~~-----~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (774)
..+............ -- .... .. .................... ..++
T Consensus 248 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~------------ 314 (997)
T 4a4z_A 248 EILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNK-RKFF------------ 314 (997)
T ss_dssp HHHC----------------------------------------------------------------------------
T ss_pred HHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc------------
Confidence 111110000000000 00 0000 00 00000000000000000000 0000
Q ss_pred chhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHH
Q 004098 454 EMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLC 533 (774)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~ 533 (774)
. .......+...++..|... ...++||||++++.|+.++..|.
T Consensus 315 ------~------------------------------~~~~~~~~~~~li~~l~~~-~~~~~IVF~~sr~~~e~la~~L~ 357 (997)
T 4a4z_A 315 ------T------------------------------QDGPSKKTWPEIVNYLRKR-ELLPMVVFVFSKKRCEEYADWLE 357 (997)
T ss_dssp --------------------------------------CCCCTTHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHTTT
T ss_pred ------c------------------------------ccccchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHh
Confidence 0 0001112233444444443 45699999999999999999998
Q ss_pred hCCC---------------------------------------ceEEecCCCCHHHHHHHHHHHhcCCceEEEEeccccc
Q 004098 534 GFGV---------------------------------------KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574 (774)
Q Consensus 534 ~~g~---------------------------------------~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~ 574 (774)
..++ .+..|||+|++.+|..+++.|++|.++|||||+++++
T Consensus 358 ~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~ 437 (997)
T 4a4z_A 358 GINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAM 437 (997)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhC
Confidence 7665 5799999999999999999999999999999999999
Q ss_pred CcccCCcceEEEeCCCC---------CHHHHHHHhhccccCC--CcceEEEEeeCCCCC-----cc-------CCCC--C
Q 004098 575 GIDKLNVRRIIHYGWPQ---------SLEAYYQEAGRAGRDG--HLADCVLYANLSSMP-----TL-------LPSR--R 629 (774)
Q Consensus 575 GIDip~V~~VI~~d~p~---------s~~~y~Qr~GRaGR~G--~~g~~il~~~~~~~~-----~~-------~~~~--~ 629 (774)
|||+|+ +.||++++|+ |+.+|+||+|||||.| ..|.|++++...... .+ +.+. .
T Consensus 438 GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~ 516 (997)
T 4a4z_A 438 GLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRL 516 (997)
T ss_dssp SCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCC
T ss_pred CCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHhcCCCccccccccc
Confidence 999999 7777777766 9999999999999999 567788877321111 11 0110 0
Q ss_pred CHHHHHH--------HHHHHHHHH-HhccccchhHHHHHHHHcCCCCCCcCCCCCCCCCCC
Q 004098 630 SEDQTKQ--------AYRMLSDCF-RYGMNTSCCRAKILVEYFGEDFSHEKCQLCDVCVDG 681 (774)
Q Consensus 630 ~~~~~~~--------~~~~l~~~~-~y~~~~~~Crr~~l~~~f~~~~~~~~c~~Cd~C~~~ 681 (774)
......+ ...|+..+| .|..+...|++...++||++......|..||+|...
T Consensus 517 ~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~c~~c~~~ 577 (997)
T 4a4z_A 517 TYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEYKSCEICDND 577 (997)
T ss_dssp CHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 1111111 112232221 233367789999999999988655679999999753
No 21
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.8e-43 Score=406.82 Aligned_cols=402 Identities=16% Similarity=0.185 Sum_probs=204.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc--------CCeEEEEccchHHHHHHHHHHHhc----CC
Q 004098 171 HSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT--------GKVVVVISPLISLMHDQCSKLSKH----GV 238 (774)
Q Consensus 171 ~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~--------~~~~LVvsPt~~L~~qq~~~l~~~----gi 238 (774)
.-+|||+|.++++.+++|+|+++++|||+|||++|++|++.. ++++|||+||++|+.||.+.+.++ ++
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 84 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 84 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 347999999999999999999999999999999999999753 789999999999999999999986 88
Q ss_pred cEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHH-HhcCccEEEEecccccccCCCCcHHHHHHHHHHHH
Q 004098 239 TACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLA-ESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRE 317 (774)
Q Consensus 239 ~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~-~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~ 317 (774)
.+..++++.........+ ...++|+|+||++|.+++. .+.+ .+.++++|||||||++.+|+. +......+ +..
T Consensus 85 ~~~~~~g~~~~~~~~~~~-~~~~~i~v~T~~~l~~~~~--~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~--~~~ 158 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKV-IEDSDIIVVTPQILVNSFE--DGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRY--LEQ 158 (556)
T ss_dssp CEEECCCC-----CHHHH-HHHCSEEEECHHHHHHHHH--SSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHHHH--HHH
T ss_pred eEEEEeCCCCcchhHHHh-hCCCCEEEECHHHHHHHHH--hCcccccccCCEEEEECCcccCCcch-HHHHHHHH--HHh
Confidence 999888877554322222 2347999999999987765 3333 467899999999999998872 22222121 111
Q ss_pred HhcccccccccCCCCEEEEeccCCH----------HHHHHHHHHcCCCC------CceEEEccCCCCCcEEEEeecCCcc
Q 004098 318 NFGANNLKSLKFDIPLMALTATATI----------QVREDILKSLHMSK------GTKFVLTSFFRPNLRFSVKHSKTSS 381 (774)
Q Consensus 318 ~~~~~~~~~l~~~~~il~lTAT~~~----------~~~~~i~~~L~~~~------~~~~~~~~~~r~~l~~~v~~~~~~~ 381 (774)
.+. ...+..++++||||+.. +....++..|+... ....+.....++...+..... ..
T Consensus 159 ~~~-----~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 231 (556)
T 4a2p_A 159 KFN-----SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR--RI 231 (556)
T ss_dssp HHC-----C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCC--CS
T ss_pred hhc-----ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCC--Cc
Confidence 111 11236889999999964 23334455554220 000011112344443333221 11
Q ss_pred chhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhh
Q 004098 382 RASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLE 461 (774)
Q Consensus 382 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 461 (774)
...+...+..++..+.......-....+ .. ......+......++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--------------------------~~~~~~g~~~~~~~~~ 277 (556)
T 4a2p_A 232 HNPFAAIISNLMSETEALMRTIYSVDTL--------SQ--------------------------NSKKDFGTQNYEHWIV 277 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCC-------------------------------------------CCCSSHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHhhhhhh--------hc--------------------------ccccccchhhHHHHHH
Confidence 1223333333332222110000000000 00 0000000000000000
Q ss_pred cC----CCc--------------------------------------c----cccccccccCCCCCC---------CCCC
Q 004098 462 ND----SVD--------------------------------------D----WDVACGEFYGHSPHR---------DRDT 486 (774)
Q Consensus 462 ~~----~~~--------------------------------------~----~~~~~~~~~~~~~~~---------~~~~ 486 (774)
.- ... . ....+.......... ....
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (556)
T 4a2p_A 278 VTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKE 357 (556)
T ss_dssp HHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTH
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHH
Confidence 00 000 0 000000000000000 0000
Q ss_pred c----cchhhccccCchhHhhhhccCC---CCCCcEEEEeCchHHHHHHHHHHHhC------------CCceEEecCCCC
Q 004098 487 D----RSFERTDLLNKPAERLSMLQEP---LEDGLTIIYVPTRKETLSIAKYLCGF------------GVKAAAYNASLP 547 (774)
Q Consensus 487 ~----~~~~~~~~~~k~~~ll~~L~~~---~~~~~~IIF~~sr~~~~~l~~~L~~~------------g~~~~~~h~~l~ 547 (774)
. ..........|...+.++|.+. ....++||||+++..++.+++.|... |..+..+||+|+
T Consensus 358 ~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~ 437 (556)
T 4a2p_A 358 PELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMT 437 (556)
T ss_dssp HHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------
T ss_pred HHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccC
Confidence 0 0000001244666666666543 35679999999999999999999875 566677788999
Q ss_pred HHHHHHHHHHHhc-CCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCC
Q 004098 548 KSQLRRVHTEFHE-NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (774)
Q Consensus 548 ~~~R~~~~~~F~~-g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~ 621 (774)
+++|.+++++|++ |+++|||||+++++|||+|+|++|||||+|+|+..|+||+|| ||. ++|.|++|++..+.
T Consensus 438 ~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 438 LPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp ----------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred HHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 9999999999999 999999999999999999999999999999999999999999 999 88999999875543
No 22
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-44 Score=413.94 Aligned_cols=327 Identities=19% Similarity=0.269 Sum_probs=212.1
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEecCCCchHHHHHHhhhcc------CCeEEEEccchHHH
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLISLM 226 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g--~d~lv~apTGsGKTl~~~lpal~~------~~~~LVvsPt~~L~ 226 (774)
..+.+.+.+.|. ..|+..|+++|.++|+.++++ +|++++||||+|||++|++|++.. ++++|||+|+++|+
T Consensus 124 ~~l~~~~~~~l~-~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~ 202 (508)
T 3fho_A 124 XXXXXXXXXXXX-XXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELA 202 (508)
T ss_dssp ----------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHH
T ss_pred cccccccccccc-cccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHH
Confidence 345566777776 459999999999999999998 999999999999999999998742 45899999999999
Q ss_pred HHHHHHHHhcC----CcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc-C
Q 004098 227 HDQCSKLSKHG----VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK-W 301 (774)
Q Consensus 227 ~qq~~~l~~~g----i~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~-~ 301 (774)
.|+++.+.+++ +......++... ......++|+|+||++|.+.+. .....+.++++|||||||++++ +
T Consensus 203 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Ivv~T~~~l~~~l~--~~~~~~~~~~lIIiDEaH~~~~~~ 275 (508)
T 3fho_A 203 RQIMDVVTEMGKYTEVKTAFGIKDSVP-----KGAKIDAQIVIGTPGTVMDLMK--RRQLDARDIKVFVLDEADNMLDQQ 275 (508)
T ss_dssp HHHHHHHHHHSTTSSCCEEC---------------CCCCSEEEECHHHHHHHHH--TTCSCCTTCCEEEECCHHHHTTC-
T ss_pred HHHHHHHHHhCCccCeeEEEEeCCccc-----ccccCCCCEEEECHHHHHHHHH--cCCccccCCCEEEEechhhhcccC
Confidence 99999999863 333333332221 1123467999999999987665 3444567899999999999987 4
Q ss_pred CCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEc--cCCCCCcEEEEeecCC
Q 004098 302 GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT--SFFRPNLRFSVKHSKT 379 (774)
Q Consensus 302 g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~--~~~r~~l~~~v~~~~~ 379 (774)
+ |...+..+... ++.+.|++++|||++..+.......+... ..+... ....+++........
T Consensus 276 ~--~~~~~~~i~~~-----------~~~~~~~i~lSAT~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~- 339 (508)
T 3fho_A 276 G--LGDQSMRIKHL-----------LPRNTQIVLFSATFSERVEKYAERFAPNA--NEIRLKTEELSVEGIKQLYMDCQ- 339 (508)
T ss_dssp ---CHHHHHHHHHH-----------SCTTCEEEEEESCCSTHHHHHHHHHSTTC--EEECCCCCC----CCCCEEEEC--
T ss_pred C--cHHHHHHHHHh-----------CCcCCeEEEEeCCCCHHHHHHHHHhcCCC--eEEEeccccCCcccceEEEEECC-
Confidence 5 77777666322 23378999999999877766555444321 111000 000000000000000
Q ss_pred ccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhh
Q 004098 380 SSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEF 459 (774)
Q Consensus 380 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (774)
T Consensus 340 -------------------------------------------------------------------------------- 339 (508)
T 3fho_A 340 -------------------------------------------------------------------------------- 339 (508)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCce
Q 004098 460 LENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKA 539 (774)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~ 539 (774)
....+...+..++ .....+++||||++++.++.+++.|.+.++.+
T Consensus 340 ----------------------------------~~~~k~~~l~~ll-~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v 384 (508)
T 3fho_A 340 ----------------------------------SEEHKYNVLVELY-GLLTIGQSIIFCKKKDTAEEIARRMTADGHTV 384 (508)
T ss_dssp -----------------------------------CHHHHHHHHHHH-C---CCCEEEBCSSTTTTTHHHHHHTTTTCCC
T ss_pred ----------------------------------chHHHHHHHHHHH-HhcCCCcEEEEECCHHHHHHHHHHHHhCCCcE
Confidence 0001111122222 22356799999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCC------CCHHHHHHHhhccccCCCcceEE
Q 004098 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWP------QSLEAYYQEAGRAGRDGHLADCV 613 (774)
Q Consensus 540 ~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p------~s~~~y~Qr~GRaGR~G~~g~~i 613 (774)
..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+||.| .|+..|+||+|||||.|+.|.|+
T Consensus 385 ~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i 464 (508)
T 3fho_A 385 ACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSI 464 (508)
T ss_dssp CEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEE
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEE
Confidence 999999999999999999999999999999999999999999999999999 88999999999999999999999
Q ss_pred EEeeCCC
Q 004098 614 LYANLSS 620 (774)
Q Consensus 614 l~~~~~~ 620 (774)
+|+...+
T Consensus 465 ~l~~~~~ 471 (508)
T 3fho_A 465 NFVHDKK 471 (508)
T ss_dssp EEECTTT
T ss_pred EEEeChH
Confidence 9997543
No 23
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.6e-43 Score=428.47 Aligned_cols=402 Identities=16% Similarity=0.196 Sum_probs=213.9
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc--------CCeEEEEccchHHHHHHHHHHHhc---
Q 004098 168 HFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT--------GKVVVVISPLISLMHDQCSKLSKH--- 236 (774)
Q Consensus 168 ~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~--------~~~~LVvsPt~~L~~qq~~~l~~~--- 236 (774)
.+|+..|||+|.++|+++++|+|+|+++|||+|||++|++|++.. ++++|||+||++|+.||+..+.++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 446889999999999999999999999999999999999999764 789999999999999999999986
Q ss_pred -CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHH-HhcCccEEEEecccccccCCCCcHHHHHHHHH
Q 004098 237 -GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLA-ESRGIALFAIDEVHCVSKWGHDFRPDYRRLSV 314 (774)
Q Consensus 237 -gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~-~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~ 314 (774)
++++..++++.........+ ...++|+|+||++|.+++. ...+ .+.++++|||||||++...+. +...+..+..
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~-~~~~~IvI~Tp~~L~~~l~--~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~~~~~~ 398 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKV-IEDSDIIVVTPQILVNSFE--DGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLE 398 (936)
T ss_dssp TTCCEEEECCC-----CCHHH-HHHCSEEEECHHHHHHHHH--SSSCCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHHH
T ss_pred cCceEEEEECCcchhhHHHHh-ccCCCEEEecHHHHHHHHH--cCccccccCCCEEEEECccccCCCcc-HHHHHHHHHH
Confidence 89999999887543322222 2347999999999987765 3333 456789999999999987552 3333222211
Q ss_pred HHHHhcccccccccCCCCEEEEeccCCH----------HHHHHHHHHcCCCCCceEEE---------ccCCCCCcEEEEe
Q 004098 315 LRENFGANNLKSLKFDIPLMALTATATI----------QVREDILKSLHMSKGTKFVL---------TSFFRPNLRFSVK 375 (774)
Q Consensus 315 l~~~~~~~~~~~l~~~~~il~lTAT~~~----------~~~~~i~~~L~~~~~~~~~~---------~~~~r~~l~~~v~ 375 (774)
. . +....+..++++||||+.. +....++..|+.. .+.. ..+.++...+...
T Consensus 399 ~--~-----~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~---~i~~~~~~~~~l~~~~~~p~~~~~~~ 468 (936)
T 4a2w_A 399 Q--K-----FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ---AISTVRENIQELQRFMNKPEIDVRLV 468 (936)
T ss_dssp H--H-----HTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS---EEECCCSSHHHHHHHSCCCCEEEEEC
T ss_pred H--h-----hccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCc---eeecccccHHHHHHhccCCcceEEec
Confidence 1 1 1111236789999999964 3334455555432 1111 1224454444333
Q ss_pred ecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccch
Q 004098 376 HSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEM 455 (774)
Q Consensus 376 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (774)
... ....+...+..++..+....+..-....+ .. ......+...
T Consensus 469 ~~~--~~~~~~~~l~~l~~~i~~~~~~~l~~~~l-----~~-----------------------------~~~~~~g~~~ 512 (936)
T 4a2w_A 469 KRR--IHNPFAAIISNLMSETEALMRTIAYVDTL-----SQ-----------------------------NSKKDFGTQN 512 (936)
T ss_dssp CCC--SCCHHHHHHHHHHHHHHHHHHHC----------------------------------------------CCSSHH
T ss_pred ccc--cCcHHHHHHHHHHHHHHHHHHHHHhhhhh-----hh-----------------------------ccccccchHH
Confidence 221 11233333333333221110000000000 00 0000000000
Q ss_pred hhhhhhc---C-C----Cc----------------------------------ccccccccccCCCCCCC-CCCcc----
Q 004098 456 SVEFLEN---D-S----VD----------------------------------DWDVACGEFYGHSPHRD-RDTDR---- 488 (774)
Q Consensus 456 ~~~~l~~---~-~----~~----------------------------------~~~~~~~~~~~~~~~~~-~~~~~---- 488 (774)
...++.. . . .. ........++....... .....
T Consensus 513 y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~ 592 (936)
T 4a2w_A 513 YEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTA 592 (936)
T ss_dssp HHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 0001000 0 0 00 00000000000000000 00000
Q ss_pred ------------chhhccccCchhHhhhhccCC---CCCCcEEEEeCchHHHHHHHHHHHhC------------CCceEE
Q 004098 489 ------------SFERTDLLNKPAERLSMLQEP---LEDGLTIIYVPTRKETLSIAKYLCGF------------GVKAAA 541 (774)
Q Consensus 489 ------------~~~~~~~~~k~~~ll~~L~~~---~~~~~~IIF~~sr~~~~~l~~~L~~~------------g~~~~~ 541 (774)
.........|...+.++|.+. ..+.++||||++++.++.|+++|... |..+..
T Consensus 593 ~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~ 672 (936)
T 4a2w_A 593 KFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRD 672 (936)
T ss_dssp HHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------
T ss_pred HHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcc
Confidence 000001245666677777654 35679999999999999999999986 666777
Q ss_pred ecCCCCHHHHHHHHHHHhc-CCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 542 YNASLPKSQLRRVHTEFHE-NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 542 ~h~~l~~~~R~~~~~~F~~-g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
+||+|++.+|.+++++|++ |+++|||||+++++|||+|+|++|||||+|+|+..|+||+|| ||. +.|.+++|++..+
T Consensus 673 ~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t 750 (936)
T 4a2w_A 673 QTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (936)
T ss_dssp ---------------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHH
T ss_pred cCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCC
Confidence 7999999999999999999 999999999999999999999999999999999999999999 999 7899999987654
Q ss_pred C
Q 004098 621 M 621 (774)
Q Consensus 621 ~ 621 (774)
.
T Consensus 751 ~ 751 (936)
T 4a2w_A 751 V 751 (936)
T ss_dssp H
T ss_pred H
Confidence 3
No 24
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=8.7e-43 Score=403.50 Aligned_cols=402 Identities=19% Similarity=0.200 Sum_probs=229.4
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc--------CCeEEEEccchHHHHHHHHHHHhc----CCcE
Q 004098 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT--------GKVVVVISPLISLMHDQCSKLSKH----GVTA 240 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~--------~~~~LVvsPt~~L~~qq~~~l~~~----gi~~ 240 (774)
+|||+|.++++++++|+|+++++|||+|||++|++|++.. ++++|||+||++|+.||.+.+.++ ++.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 6999999999999999999999999999999999999753 789999999999999999999986 8999
Q ss_pred EEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHH-HhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHh
Q 004098 241 CFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLA-ESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENF 319 (774)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~-~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~ 319 (774)
..++++.........+ ...++|+|+||++|.+++. .... .+.++++|||||||++.+++. +......+ +...+
T Consensus 84 ~~~~g~~~~~~~~~~~-~~~~~i~v~T~~~l~~~~~--~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~--~~~~~ 157 (555)
T 3tbk_A 84 ASISGATSDSVSVQHI-IEDNDIIILTPQILVNNLN--NGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFRY--LDHKL 157 (555)
T ss_dssp EEECTTTGGGSCHHHH-HHHCSEEEECHHHHHHHHH--TSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHHH--HHHHT
T ss_pred EEEcCCCcchhhHHHH-hcCCCEEEECHHHHHHHHh--cCcccccccCCEEEEECccccCCcch-HHHHHHHH--HHhhh
Confidence 9998887554322222 2347999999999987765 3333 467799999999999987652 33332222 11111
Q ss_pred cccccccccCCCCEEEEeccCCH----------HHHHHHHHHcCCCC------CceEEEccCCCCCcEEEEeecCCccch
Q 004098 320 GANNLKSLKFDIPLMALTATATI----------QVREDILKSLHMSK------GTKFVLTSFFRPNLRFSVKHSKTSSRA 383 (774)
Q Consensus 320 ~~~~~~~l~~~~~il~lTAT~~~----------~~~~~i~~~L~~~~------~~~~~~~~~~r~~l~~~v~~~~~~~~~ 383 (774)
. ....+..++++||||+.. +....+...|+... ....+.....++...+...... ...
T Consensus 158 ~----~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~ 231 (555)
T 3tbk_A 158 G----ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASR--TSN 231 (555)
T ss_dssp S----SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCC--SCC
T ss_pred c----cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCc--ccC
Confidence 1 111236789999999965 23334555554320 0000112233444444333221 122
Q ss_pred hhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhc-
Q 004098 384 SYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN- 462 (774)
Q Consensus 384 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 462 (774)
.+...+..++..+....+..-... ..... ......+......++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~--------------------------~~~~~~g~~~~~~~~~~~ 278 (555)
T 3tbk_A 232 TFKCIISQLMKETEKLAKDVSEEL-------GKLFQ--------------------------IQNREFGTQKYEQWIVGV 278 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHH-------HGGGG--------------------------CCSCCSSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh-------hhhhh--------------------------cccccccchhhhHHHHHH
Confidence 333333333332221100000000 00000 00000000000000000
Q ss_pred --C-CCccc------------ccccc--------------------------cccCCC-CCCCCCC-c------------
Q 004098 463 --D-SVDDW------------DVACG--------------------------EFYGHS-PHRDRDT-D------------ 487 (774)
Q Consensus 463 --~-~~~~~------------~~~~~--------------------------~~~~~~-~~~~~~~-~------------ 487 (774)
. ..... ...|. .++... ....... .
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (555)
T 3tbk_A 279 HKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEE 358 (555)
T ss_dssp HHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHH
T ss_pred HHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhh
Confidence 0 00000 00000 000000 0000000 0
Q ss_pred ---cchhhccccCchhHhhhhccCC---CCCCcEEEEeCchHHHHHHHHHHHhCC------------CceEEecCCCCHH
Q 004098 488 ---RSFERTDLLNKPAERLSMLQEP---LEDGLTIIYVPTRKETLSIAKYLCGFG------------VKAAAYNASLPKS 549 (774)
Q Consensus 488 ---~~~~~~~~~~k~~~ll~~L~~~---~~~~~~IIF~~sr~~~~~l~~~L~~~g------------~~~~~~h~~l~~~ 549 (774)
..........|...+.++|.+. ....++||||+++..++.+++.|...+ .....+||+|+++
T Consensus 359 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 438 (555)
T 3tbk_A 359 LEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLP 438 (555)
T ss_dssp HHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-------------
T ss_pred hhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHH
Confidence 0000001234556666666543 356799999999999999999999864 3455666799999
Q ss_pred HHHHHHHHHhc-CCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCC
Q 004098 550 QLRRVHTEFHE-NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (774)
Q Consensus 550 ~R~~~~~~F~~-g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~ 621 (774)
+|.+++++|++ |+++|||||+++++|||+|+|++|||||+|+|+..|+||+|| ||. +.|.+++|++..+.
T Consensus 439 ~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 439 AQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADV 509 (555)
T ss_dssp -------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHH
T ss_pred HHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCH
Confidence 99999999999 999999999999999999999999999999999999999999 999 89999999875543
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-42 Score=421.43 Aligned_cols=359 Identities=15% Similarity=0.161 Sum_probs=242.2
Q ss_pred HHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHhcCCcEEE
Q 004098 166 KKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKHGVTACF 242 (774)
Q Consensus 166 ~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~ 242 (774)
...++| .|+|+|.++|+.+++|+|+||+||||+|||++|++|++. .++++||++||++|+.|+++.+.++...+..
T Consensus 178 ~~~~~f-~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~Vgl 256 (1108)
T 3l9o_A 178 ARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGL 256 (1108)
T ss_dssp SSCCSS-CCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEE
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccE
Confidence 334455 699999999999999999999999999999999999875 4889999999999999999999997667888
Q ss_pred EcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhccc
Q 004098 243 LGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGAN 322 (774)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~ 322 (774)
++++... .+.++|+|+||++|.+++. .....+.++++|||||||++.+|+ |...+..+..
T Consensus 257 ltGd~~~--------~~~~~IlV~Tpe~L~~~L~--~~~~~l~~l~lVVIDEaH~l~d~~--rg~~~e~ii~-------- 316 (1108)
T 3l9o_A 257 MTGDITI--------NPDAGCLVMTTEILRSMLY--RGSEVMREVAWVIFDEVHYMRDKE--RGVVWEETII-------- 316 (1108)
T ss_dssp ECSSCBC--------CCSCSEEEEEHHHHHHHHH--HCSSHHHHEEEEEEETGGGTTSHH--HHHHHHHHHH--------
T ss_pred EeCcccc--------CCCCCEEEeChHHHHHHHH--cCccccccCCEEEEhhhhhccccc--hHHHHHHHHH--------
Confidence 8877653 3568999999999988776 333345679999999999999987 7777766632
Q ss_pred ccccccCCCCEEEEeccCCHHH-HHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCcc--------chhhhHhHHHHH
Q 004098 323 NLKSLKFDIPLMALTATATIQV-REDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSS--------RASYKKDFCQLI 393 (774)
Q Consensus 323 ~~~~l~~~~~il~lTAT~~~~~-~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~--------~~~~~~~l~~l~ 393 (774)
.+++++++++||||++... ..+.+..+.. .+..++.......++...+....... .......+...+
T Consensus 317 ---~l~~~~qvl~lSATipn~~e~a~~l~~~~~-~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~ 392 (1108)
T 3l9o_A 317 ---LLPDKVRYVFLSATIPNAMEFAEWICKIHS-QPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAM 392 (1108)
T ss_dssp ---HSCTTSEEEEEECSCSSCHHHHHHHHHHTC-SCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHH
T ss_pred ---hcCCCceEEEEcCCCCCHHHHHHHHHhhcC-CCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHH
Confidence 2345899999999986542 2222222221 13444444444444444433211100 000011111111
Q ss_pred HHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccc
Q 004098 394 DIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACG 473 (774)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 473 (774)
..+......... . ... ....... +..
T Consensus 393 ~~l~~~~~~~~~-------------~----~~~-------~~~~~~~------------------~~~------------ 418 (1108)
T 3l9o_A 393 ASISNQIGDDPN-------------S----TDS-------RGKKGQT------------------YKG------------ 418 (1108)
T ss_dssp TTC-----------------------------------------------------------------------------
T ss_pred HHHHhhhccccc-------------c----ccc-------ccccccc------------------ccc------------
Confidence 110000000000 0 000 0000000 000
Q ss_pred cccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCc---------------
Q 004098 474 EFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVK--------------- 538 (774)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~--------------- 538 (774)
.........+...++..+... ...++||||++++.|+.++..|...++.
T Consensus 419 ---------------~~~~~~~~~~l~~li~~l~~~-~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~ 482 (1108)
T 3l9o_A 419 ---------------GSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNA 482 (1108)
T ss_dssp ---------------------CHHHHHHHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGS
T ss_pred ---------------ccccccchhHHHHHHHHHHhc-CCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 000000011222233333332 4568999999999999999998653332
Q ss_pred ------------------------eEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCC-----
Q 004098 539 ------------------------AAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW----- 589 (774)
Q Consensus 539 ------------------------~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~----- 589 (774)
+..|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++.
T Consensus 483 ~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~ 562 (1108)
T 3l9o_A 483 IALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQ 562 (1108)
T ss_dssp CTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSS
T ss_pred HhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCcc
Confidence 789999999999999999999999999999999999999999999997776
Q ss_pred ---CCCHHHHHHHhhccccCC--CcceEEEEeeCC
Q 004098 590 ---PQSLEAYYQEAGRAGRDG--HLADCVLYANLS 619 (774)
Q Consensus 590 ---p~s~~~y~Qr~GRaGR~G--~~g~~il~~~~~ 619 (774)
|.|+.+|+||+|||||.| ..|.|+++++..
T Consensus 563 ~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 563 QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 347888999999999999 789999998755
No 26
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7.2e-42 Score=411.49 Aligned_cols=405 Identities=16% Similarity=0.209 Sum_probs=212.7
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc--------CCeEEEEccchHHHHHHHHHHHhc---
Q 004098 168 HFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT--------GKVVVVISPLISLMHDQCSKLSKH--- 236 (774)
Q Consensus 168 ~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~--------~~~~LVvsPt~~L~~qq~~~l~~~--- 236 (774)
.+|+..|||||.++|+.+++|+|+|+++|||+|||++|++|++.. ++++|||+||++|+.||++.+.++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 568889999999999999999999999999999999999999753 789999999999999999999986
Q ss_pred -CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHH-HhcCccEEEEecccccccCCCCcHHHHHHHHH
Q 004098 237 -GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLA-ESRGIALFAIDEVHCVSKWGHDFRPDYRRLSV 314 (774)
Q Consensus 237 -gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~-~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~ 314 (774)
++++..++++......... ....++|+|+||++|.+.+. ...+ .+.++++|||||||++...+ .+...+..+..
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~-~~~~~~Ivv~Tp~~l~~~l~--~~~~~~~~~~~~iViDEaH~~~~~~-~~~~i~~~~~~ 398 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEK-VIEDSDIIVVTPQILVNSFE--DGTLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLE 398 (797)
T ss_dssp GTCCEEEECCC-----CHHH-HHHTCSEEEECHHHHHHHHH--SSSCCCGGGCSEEEETTGGGCSTTS-HHHHHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHH-hhCCCCEEEEchHHHHHHHH--hccccccccCCEEEEECccccCCCc-cHHHHHHHHHH
Confidence 8999999988765432223 33457999999999987765 3333 46778999999999998744 13332222211
Q ss_pred HHHHhcccccccccCCCCEEEEeccCCH----------HHHHHHHHHcCCCCCc------eEEEccCCCCCcEEEEeecC
Q 004098 315 LRENFGANNLKSLKFDIPLMALTATATI----------QVREDILKSLHMSKGT------KFVLTSFFRPNLRFSVKHSK 378 (774)
Q Consensus 315 l~~~~~~~~~~~l~~~~~il~lTAT~~~----------~~~~~i~~~L~~~~~~------~~~~~~~~r~~l~~~v~~~~ 378 (774)
..+ ....+..++++||||+.. +....++..|+..... ..+...+.++...+......
T Consensus 399 --~~~-----~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~ 471 (797)
T 4a2q_A 399 --QKF-----NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR 471 (797)
T ss_dssp --HHH-----TTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCC
T ss_pred --Hhh-----ccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCC
Confidence 111 111236789999999964 3444555566432100 00111223444444333211
Q ss_pred CccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhh
Q 004098 379 TSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVE 458 (774)
Q Consensus 379 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (774)
....+...+..++..+.......-....+ ... .....+......
T Consensus 472 --~~~~~~~~~~~l~~~i~~~~~~~~~l~~l-----~~~-----------------------------~~~~~g~~~~~~ 515 (797)
T 4a2q_A 472 --IHNPFAAIISNLMSETEALMRTIYSVDTL-----SQN-----------------------------SKKDFGTQNYEH 515 (797)
T ss_dssp --SCCHHHHHHHHHHHHHHHHHHHC----------------------------------------------CCSSHHHHH
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHHhhHHh-----hhh-----------------------------ccccccchhHHH
Confidence 11233333333332221110000000000 000 000000000000
Q ss_pred hhhcC-------C-Cc-------------------cc---------------ccccccccCC---CCCCC----------
Q 004098 459 FLEND-------S-VD-------------------DW---------------DVACGEFYGH---SPHRD---------- 483 (774)
Q Consensus 459 ~l~~~-------~-~~-------------------~~---------------~~~~~~~~~~---~~~~~---------- 483 (774)
++..- . .. .+ ......++.. .....
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 595 (797)
T 4a2q_A 516 WIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQ 595 (797)
T ss_dssp HHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHH
Confidence 11000 0 00 00 0000000000 00000
Q ss_pred CCCcc----chhhccccCchhHhhhhccCC---CCCCcEEEEeCchHHHHHHHHHHHhC------------CCceEEecC
Q 004098 484 RDTDR----SFERTDLLNKPAERLSMLQEP---LEDGLTIIYVPTRKETLSIAKYLCGF------------GVKAAAYNA 544 (774)
Q Consensus 484 ~~~~~----~~~~~~~~~k~~~ll~~L~~~---~~~~~~IIF~~sr~~~~~l~~~L~~~------------g~~~~~~h~ 544 (774)
..... .........|...+..+|.+. ..+.++||||++++.++.|+++|... |..+..+||
T Consensus 596 ~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg 675 (797)
T 4a2q_A 596 EKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTT 675 (797)
T ss_dssp TTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------
T ss_pred HHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCC
Confidence 00000 000001244666666666542 35679999999999999999999873 566778899
Q ss_pred CCCHHHHHHHHHHHhc-CCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCC
Q 004098 545 SLPKSQLRRVHTEFHE-NKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (774)
Q Consensus 545 ~l~~~~R~~~~~~F~~-g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~ 621 (774)
+|++++|..++++|++ |+++|||||+++++|||+|+|++|||||+|+|+..|+||+|| ||. ++|.|++|++..+.
T Consensus 676 ~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 676 GMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp ------------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred CCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 9999999999999999 999999999999999999999999999999999999999999 999 89999999875543
No 27
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=8.4e-42 Score=418.01 Aligned_cols=292 Identities=19% Similarity=0.248 Sum_probs=218.5
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHhc
Q 004098 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKH 236 (774)
Q Consensus 160 ~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~~ 236 (774)
.+.+.++..+|| +|+|+|.++|+.+++|+|++++||||+|||++|++|++. .++++|||+||++|+.|+++.+.++
T Consensus 66 ~~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 66 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHh
Confidence 455667778899 699999999999999999999999999999999888765 6889999999999999999999994
Q ss_pred ---CCcEEEEcCCCCh---HHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc----------
Q 004098 237 ---GVTACFLGSGQPD---NKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK---------- 300 (774)
Q Consensus 237 ---gi~~~~l~~~~~~---~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~---------- 300 (774)
++++..++++.+. ......+..+.++|+|+||++|.+++.. +.+.++++|||||||++++
T Consensus 145 ~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~----l~~~~l~~lViDEaH~l~~~~r~~Dr~L~ 220 (1104)
T 4ddu_A 145 ADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKASRNIDTLLM 220 (1104)
T ss_dssp SCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH----HHTSCCSEEEESCHHHHTTSSHHHHHHHH
T ss_pred hCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh----hcccCcCEEEEeCCCccccccccchhhhH
Confidence 6789999998876 4444555566699999999999887662 5678999999999998776
Q ss_pred -CCCCcHHH-HHHHHHHHHHhccccccccc--CCCCEEEEeccCCH-HHHHHHHHH-cCCCCCceEEEccCCCCCcEEEE
Q 004098 301 -WGHDFRPD-YRRLSVLRENFGANNLKSLK--FDIPLMALTATATI-QVREDILKS-LHMSKGTKFVLTSFFRPNLRFSV 374 (774)
Q Consensus 301 -~g~~fr~~-~~~l~~l~~~~~~~~~~~l~--~~~~il~lTAT~~~-~~~~~i~~~-L~~~~~~~~~~~~~~r~~l~~~v 374 (774)
|| |.+. +..+......- ..+..++ .+.|++++|||+.+ .+...+... +.+. +.......+++...+
T Consensus 221 ~~g--f~~~~i~~il~~l~~~--~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~----v~~~~~~~~~i~~~~ 292 (1104)
T 4ddu_A 221 MVG--IPEEIIRKAFSTIKQG--KIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFT----VGRLVSVARNITHVR 292 (1104)
T ss_dssp TSS--CCHHHHHHHHHHHHHT--SCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCC----CCBCCCCCCCEEEEE
T ss_pred hcC--CCHHHHHHHHHhcccc--hhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEE----eccCCCCcCCceeEE
Confidence 56 7766 55554332200 1111222 47899999999543 333222222 2211 011111122222111
Q ss_pred eecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccc
Q 004098 375 KHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKE 454 (774)
Q Consensus 375 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (774)
..
T Consensus 293 ~~------------------------------------------------------------------------------ 294 (1104)
T 4ddu_A 293 IS------------------------------------------------------------------------------ 294 (1104)
T ss_dssp ES------------------------------------------------------------------------------
T ss_pred Ee------------------------------------------------------------------------------
Confidence 11
Q ss_pred hhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHh
Q 004098 455 MSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG 534 (774)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~ 534 (774)
..+...+..+|.. .++++||||++++.++.++..|..
T Consensus 295 -----------------------------------------~~k~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~ 331 (1104)
T 4ddu_A 295 -----------------------------------------SRSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKR 331 (1104)
T ss_dssp -----------------------------------------CCCHHHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHH
T ss_pred -----------------------------------------cCHHHHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHh
Confidence 0122333333333 237899999999999999999999
Q ss_pred CCCceE-EecCCCCHHHHHHHHHHHhcCCceEEEE----ecccccCcccCC-cceEEEeCCCC
Q 004098 535 FGVKAA-AYNASLPKSQLRRVHTEFHENKLEVVVA----TIAFGMGIDKLN-VRRIIHYGWPQ 591 (774)
Q Consensus 535 ~g~~~~-~~h~~l~~~~R~~~~~~F~~g~~~vLVA----T~a~~~GIDip~-V~~VI~~d~p~ 591 (774)
.|+.+. .+|| +|++ +++|++|+++|||| |++++||||+|+ |++|||||+|.
T Consensus 332 ~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 332 FKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999998 9999 2555 99999999999999 999999999999 99999999998
No 28
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=9.2e-42 Score=405.39 Aligned_cols=335 Identities=21% Similarity=0.257 Sum_probs=247.4
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhh---ccCCeEEEEccchHHHHHHHHHH
Q 004098 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKL 233 (774)
Q Consensus 157 ~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal---~~~~~~LVvsPt~~L~~qq~~~l 233 (774)
+++.+.+.|+ .+||..|+|+|.++++.+++++|+++++|||+|||++|.+|++ ..++++||++|+++|+.|+++.+
T Consensus 10 l~~~~~~~l~-~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~ 88 (702)
T 2p6r_A 10 ISSYAVGILK-EEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESF 88 (702)
T ss_dssp HHHHHHHHHH-CC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred cCHHHHHHHH-hCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHH
Confidence 5667788887 4799999999999999999999999999999999999999987 45889999999999999999999
Q ss_pred Hh---cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHH
Q 004098 234 SK---HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYR 310 (774)
Q Consensus 234 ~~---~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~ 310 (774)
++ +|+++..++|+...... ..+.++|+|+|||++..++. .....+.++++|||||||++.+|+ +.+.+.
T Consensus 89 ~~~~~~g~~v~~~~G~~~~~~~----~~~~~~Iiv~Tpe~l~~~l~--~~~~~l~~~~~vIiDE~H~l~~~~--r~~~~~ 160 (702)
T 2p6r_A 89 KKWEKIGLRIGISTGDYESRDE----HLGDCDIIVTTSEKADSLIR--NRASWIKAVSCLVVDEIHLLDSEK--RGATLE 160 (702)
T ss_dssp TTTTTTTCCEEEECSSCBCCSS----CSTTCSEEEEEHHHHHHHHH--TTCSGGGGCCEEEETTGGGGGCTT--THHHHH
T ss_pred HHHHhcCCEEEEEeCCCCcchh----hccCCCEEEECHHHHHHHHH--cChhHHhhcCEEEEeeeeecCCCC--cccHHH
Confidence 65 37888888887654221 12368999999999987765 222235789999999999999877 555555
Q ss_pred HHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHH
Q 004098 311 RLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFC 390 (774)
Q Consensus 311 ~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~ 390 (774)
.+....... +++.++++||||++. .+++..+|+. ..+......-++...+..... . .
T Consensus 161 ~ll~~l~~~--------~~~~~ii~lSATl~n--~~~~~~~l~~----~~~~~~~r~~~l~~~~~~~~~-~--~------ 217 (702)
T 2p6r_A 161 ILVTKMRRM--------NKALRVIGLSATAPN--VTEIAEWLDA----DYYVSDWRPVPLVEGVLCEGT-L--E------ 217 (702)
T ss_dssp HHHHHHHHH--------CTTCEEEEEECCCTT--HHHHHHHTTC----EEEECCCCSSCEEEEEECSSE-E--E------
T ss_pred HHHHHHHhc--------CcCceEEEECCCcCC--HHHHHHHhCC----CcccCCCCCccceEEEeeCCe-e--e------
Confidence 553332222 237899999999974 5677888862 233333322233222211000 0 0
Q ss_pred HHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCccccc
Q 004098 391 QLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDV 470 (774)
Q Consensus 391 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 470 (774)
+....
T Consensus 218 --------------------------------------------------------------------~~~~~------- 222 (702)
T 2p6r_A 218 --------------------------------------------------------------------LFDGA------- 222 (702)
T ss_dssp --------------------------------------------------------------------EEETT-------
T ss_pred --------------------------------------------------------------------ccCcc-------
Confidence 00000
Q ss_pred ccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhC---------------
Q 004098 471 ACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF--------------- 535 (774)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~--------------- 535 (774)
............+.+.+. .++++||||++++.++.++..|.+.
T Consensus 223 -------------------~~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~ 280 (702)
T 2p6r_A 223 -------------------FSTSRRVKFEELVEECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAIL 280 (702)
T ss_dssp -------------------EEEEEECCHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHH
T ss_pred -------------------hhhhhhhhHHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHH
Confidence 000000001111111111 4678999999999999999998753
Q ss_pred ---------------CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEE----eC---CCCCH
Q 004098 536 ---------------GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH----YG---WPQSL 593 (774)
Q Consensus 536 ---------------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~----~d---~p~s~ 593 (774)
+..+..+||+|++++|..+++.|++|+++|||||+++++|||+|++++||+ || .|.|.
T Consensus 281 ~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~ 360 (702)
T 2p6r_A 281 EENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKV 360 (702)
T ss_dssp TTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCH
T ss_pred hhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCH
Confidence 235888999999999999999999999999999999999999999999999 77 79999
Q ss_pred HHHHHHhhccccCC--CcceEEEEeeCCC
Q 004098 594 EAYYQEAGRAGRDG--HLADCVLYANLSS 620 (774)
Q Consensus 594 ~~y~Qr~GRaGR~G--~~g~~il~~~~~~ 620 (774)
.+|+||+|||||.| .+|.|+++++..+
T Consensus 361 ~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 361 SEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp HHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred HHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 99999999999998 5899999987665
No 29
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.8e-41 Score=404.13 Aligned_cols=332 Identities=20% Similarity=0.251 Sum_probs=248.7
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEecCCCchHHHHHHhhhc----cCCeEEEEccchHHHHHH
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSA-WLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQ 229 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~-il~g~d~lv~apTGsGKTl~~~lpal~----~~~~~LVvsPt~~L~~qq 229 (774)
.++++.+.+.+++ +||..|+|+|.++++. +++++|+++++|||+|||++|.+|++. .++++||++|+++|+.|+
T Consensus 6 l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~ 84 (720)
T 2zj8_A 6 LRVDERIKSTLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEK 84 (720)
T ss_dssp CCSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHH
T ss_pred cCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHH
Confidence 3567788899984 8999999999999998 788999999999999999999999872 588999999999999999
Q ss_pred HHHHHh---cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcH
Q 004098 230 CSKLSK---HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFR 306 (774)
Q Consensus 230 ~~~l~~---~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr 306 (774)
++.+.+ +|+++..++|+...... ..+.++|+|+|||++..++. .....+.++++|||||||++.+++ +.
T Consensus 85 ~~~~~~l~~~g~~v~~~~G~~~~~~~----~~~~~~Iiv~Tpe~l~~~~~--~~~~~l~~~~~vIiDE~H~l~~~~--r~ 156 (720)
T 2zj8_A 85 FQEFQDWEKIGLRVAMATGDYDSKDE----WLGKYDIIIATAEKFDSLLR--HGSSWIKDVKILVADEIHLIGSRD--RG 156 (720)
T ss_dssp HHHTGGGGGGTCCEEEECSCSSCCCG----GGGGCSEEEECHHHHHHHHH--HTCTTGGGEEEEEEETGGGGGCTT--TH
T ss_pred HHHHHHHHhcCCEEEEecCCCCcccc----ccCCCCEEEECHHHHHHHHH--cChhhhhcCCEEEEECCcccCCCc--cc
Confidence 999965 48899998886554221 12357999999999987765 333335789999999999998776 55
Q ss_pred HHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhh
Q 004098 307 PDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYK 386 (774)
Q Consensus 307 ~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~ 386 (774)
+.+..+.. .+. .+.++++||||++. .+++..+|+. ..+...+...++...+..... .
T Consensus 157 ~~~~~ll~---~l~--------~~~~ii~lSATl~n--~~~~~~~l~~----~~~~~~~rp~~l~~~~~~~~~-~----- 213 (720)
T 2zj8_A 157 ATLEVILA---HML--------GKAQIIGLSATIGN--PEELAEWLNA----ELIVSDWRPVKLRRGVFYQGF-V----- 213 (720)
T ss_dssp HHHHHHHH---HHB--------TTBEEEEEECCCSC--HHHHHHHTTE----EEEECCCCSSEEEEEEEETTE-E-----
T ss_pred HHHHHHHH---Hhh--------cCCeEEEEcCCcCC--HHHHHHHhCC----cccCCCCCCCcceEEEEeCCe-e-----
Confidence 55555422 221 26899999999975 4677778752 223222222222211111000 0
Q ss_pred HhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCc
Q 004098 387 KDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVD 466 (774)
Q Consensus 387 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 466 (774)
.+....
T Consensus 214 -----------------------------------------------------------------------~~~~~~--- 219 (720)
T 2zj8_A 214 -----------------------------------------------------------------------TWEDGS--- 219 (720)
T ss_dssp -----------------------------------------------------------------------EETTSC---
T ss_pred -----------------------------------------------------------------------eccccc---
Confidence 000000
Q ss_pred ccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhC-----------
Q 004098 467 DWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF----------- 535 (774)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~----------- 535 (774)
. .........+.+.+. .++++||||++++.++.++..|.+.
T Consensus 220 ----------------------~---~~~~~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~ 271 (720)
T 2zj8_A 220 ----------------------I---DRFSSWEELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIR 271 (720)
T ss_dssp ----------------------E---EECSSTTHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHH
T ss_pred ----------------------h---hhhhHHHHHHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHH
Confidence 0 000001111111121 4578999999999999999999753
Q ss_pred -------C---------------CceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEE----eC-
Q 004098 536 -------G---------------VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH----YG- 588 (774)
Q Consensus 536 -------g---------------~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~----~d- 588 (774)
+ ..+..|||+|++++|..+++.|++|+++|||||+++++|||+|++++||+ ||
T Consensus 272 ~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~ 351 (720)
T 2zj8_A 272 ALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSD 351 (720)
T ss_dssp HHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCS
T ss_pred HHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecC
Confidence 1 24899999999999999999999999999999999999999999999999 77
Q ss_pred ---CCCCHHHHHHHhhccccCC--CcceEEEEeeCCC
Q 004098 589 ---WPQSLEAYYQEAGRAGRDG--HLADCVLYANLSS 620 (774)
Q Consensus 589 ---~p~s~~~y~Qr~GRaGR~G--~~g~~il~~~~~~ 620 (774)
.|.|..+|+||+|||||.| ..|.|+++++..+
T Consensus 352 ~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 352 FGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp SSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred CCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 5999999999999999998 5899999998766
No 30
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2e-40 Score=395.17 Aligned_cols=339 Identities=22% Similarity=0.273 Sum_probs=246.4
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEecCCCchHHHHHHhhhc----cCCeEEEEccchHHHHHH
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSA-WLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQ 229 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~-il~g~d~lv~apTGsGKTl~~~lpal~----~~~~~LVvsPt~~L~~qq 229 (774)
.++++.+.+.++ .+||..|+|+|.++++. +++++|+++++|||+|||++|.+|++. .++++||++|+++|+.|+
T Consensus 13 l~l~~~~~~~l~-~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~ 91 (715)
T 2va8_A 13 LKLPSNVIEIIK-KRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEK 91 (715)
T ss_dssp SSSCHHHHHHHH-TTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHH
T ss_pred cCCCHHHHHHHH-hCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHH
Confidence 356788888888 48999999999999999 778999999999999999999999872 588999999999999999
Q ss_pred HHHHHh---cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcH
Q 004098 230 CSKLSK---HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFR 306 (774)
Q Consensus 230 ~~~l~~---~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr 306 (774)
++.++. +|+++..++|+...... .. +.++|+|+|||++..++. .....+.++++|||||||++.+++ +.
T Consensus 92 ~~~~~~~~~~g~~v~~~~G~~~~~~~---~~-~~~~Iiv~Tpe~l~~~~~--~~~~~l~~~~~vIiDE~H~l~~~~--~~ 163 (715)
T 2va8_A 92 YLTFKDWELIGFKVAMTSGDYDTDDA---WL-KNYDIIITTYEKLDSLWR--HRPEWLNEVNYFVLDELHYLNDPE--RG 163 (715)
T ss_dssp HHHHGGGGGGTCCEEECCSCSSSCCG---GG-GGCSEEEECHHHHHHHHH--HCCGGGGGEEEEEECSGGGGGCTT--TH
T ss_pred HHHHHHhhcCCCEEEEEeCCCCCchh---hc-CCCCEEEEcHHHHHHHHh--CChhHhhccCEEEEechhhcCCcc--cc
Confidence 999854 47888888877654321 12 357999999999988766 333336789999999999998766 56
Q ss_pred HHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhh
Q 004098 307 PDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYK 386 (774)
Q Consensus 307 ~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~ 386 (774)
+.+..+.. .++ +.++++||||++. .+++..+|+. ..+...+..-++...+........
T Consensus 164 ~~l~~i~~---~~~---------~~~ii~lSATl~n--~~~~~~~l~~----~~~~~~~r~~~l~~~~~~~~~~~~---- 221 (715)
T 2va8_A 164 PVVESVTI---RAK---------RRNLLALSATISN--YKQIAKWLGA----EPVATNWRPVPLIEGVIYPERKKK---- 221 (715)
T ss_dssp HHHHHHHH---HHH---------TSEEEEEESCCTT--HHHHHHHHTC----EEEECCCCSSCEEEEEEEECSSTT----
T ss_pred hHHHHHHH---hcc---------cCcEEEEcCCCCC--HHHHHHHhCC----CccCCCCCCCCceEEEEecCCccc----
Confidence 66655432 222 6899999999974 3677778852 233333333333322221100000
Q ss_pred HhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCc
Q 004098 387 KDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVD 466 (774)
Q Consensus 387 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 466 (774)
...+ .|...
T Consensus 222 -------------------~~~~------------------------------------------------~~~~~---- 230 (715)
T 2va8_A 222 -------------------EYNV------------------------------------------------IFKDN---- 230 (715)
T ss_dssp -------------------EEEE------------------------------------------------EETTS----
T ss_pred -------------------ceee------------------------------------------------ecCcc----
Confidence 0000 00000
Q ss_pred ccccccccccCCCCCCCCCCccchhhcc-ccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCC---------
Q 004098 467 DWDVACGEFYGHSPHRDRDTDRSFERTD-LLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFG--------- 536 (774)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g--------- 536 (774)
...... .......+.+.+. .++++||||++++.++.++..|.+..
T Consensus 231 ----------------------~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~ 285 (715)
T 2va8_A 231 ----------------------TTKKVHGDDAIIAYTLDSLS---KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENA 285 (715)
T ss_dssp ----------------------CEEEEESSSHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHH
T ss_pred ----------------------hhhhcccchHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHH
Confidence 000000 0001111112221 45799999999999999999998642
Q ss_pred ---------------------------CceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEE---
Q 004098 537 ---------------------------VKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH--- 586 (774)
Q Consensus 537 ---------------------------~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~--- 586 (774)
..+..+||+|++++|..+++.|++|+++|||||+++++|||+|++++||+
T Consensus 286 ~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~ 365 (715)
T 2va8_A 286 LSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIY 365 (715)
T ss_dssp HHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC-
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCe
Confidence 24899999999999999999999999999999999999999999999999
Q ss_pred -eC-------CCCCHHHHHHHhhccccCC--CcceEEEEeeCCC
Q 004098 587 -YG-------WPQSLEAYYQEAGRAGRDG--HLADCVLYANLSS 620 (774)
Q Consensus 587 -~d-------~p~s~~~y~Qr~GRaGR~G--~~g~~il~~~~~~ 620 (774)
|| .|.|..+|+||+|||||.| .+|.|+++++..+
T Consensus 366 ~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 366 RFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp -------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred eccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 99 8999999999999999998 4899999997655
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-40 Score=378.21 Aligned_cols=391 Identities=15% Similarity=0.164 Sum_probs=248.4
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc----cCCeEEEEccchHHHHHHHHHHHhc-CC---cEEEEc
Q 004098 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSKH-GV---TACFLG 244 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~----~~~~~LVvsPt~~L~~qq~~~l~~~-gi---~~~~l~ 244 (774)
.|+|+|.+++++++++ ++|+.+|||+|||++++++++. .++++|||+|+++|+.||.+++.++ ++ .+..++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 87 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALT 87 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEEC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEee
Confidence 6999999999999998 9999999999999999999875 4889999999999999999999996 66 788888
Q ss_pred CCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhccccc
Q 004098 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324 (774)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~ 324 (774)
++.........+ ..++|+|+||++|.+.+. ...+...++++|||||||++.+.. .+..+.......
T Consensus 88 g~~~~~~~~~~~--~~~~ivv~T~~~l~~~~~--~~~~~~~~~~~vIiDEaH~~~~~~-----~~~~~~~~~~~~----- 153 (494)
T 1wp9_A 88 GEKSPEERSKAW--ARAKVIVATPQTIENDLL--AGRISLEDVSLIVFDEAHRAVGNY-----AYVFIAREYKRQ----- 153 (494)
T ss_dssp SCSCHHHHHHHH--HHCSEEEECHHHHHHHHH--TTSCCTTSCSEEEEETGGGCSTTC-----HHHHHHHHHHHH-----
T ss_pred CCcchhhhhhhc--cCCCEEEecHHHHHHHHh--cCCcchhhceEEEEECCcccCCCC-----cHHHHHHHHHhc-----
Confidence 777654332222 246999999999987655 334456789999999999997532 222332222221
Q ss_pred ccccCCCCEEEEeccCC--HHHHHHHHHHcCCCCCceEEEcc--------CCCCCcEEEEeecCCccchhhhHhHHHHHH
Q 004098 325 KSLKFDIPLMALTATAT--IQVREDILKSLHMSKGTKFVLTS--------FFRPNLRFSVKHSKTSSRASYKKDFCQLID 394 (774)
Q Consensus 325 ~~l~~~~~il~lTAT~~--~~~~~~i~~~L~~~~~~~~~~~~--------~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~ 394 (774)
.+..++++||||+. .....+++..++... ...... +......+.... ... . ...+...+.
T Consensus 154 ---~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~-~~~~~~~~~ 223 (494)
T 1wp9_A 154 ---AKNPLVIGLTASPGSTPEKIMEVINNLGIEH--IEYRSENSPDVRPYVKGIRFEWVRVD-LPE---I-YKEVRKLLR 223 (494)
T ss_dssp ---CSSCCEEEEESCSCSSHHHHHHHHHHTTCCE--EEECCTTSTTTGGGCCCCCEEEEEEC-CCH---H-HHHHHHHHH
T ss_pred ---CCCCeEEEEecCCCCCcHHHHHHHHhcChhe--eeccCCCcHHHHHhcCCCceeEEecC-CcH---H-HHHHHHHHH
Confidence 22688999999997 345566777776542 111111 111111111111 110 1 111111111
Q ss_pred HHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCcc------chhhhhhhcCCCccc
Q 004098 395 IYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGK------EMSVEFLENDSVDDW 468 (774)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~ 468 (774)
..............++.... . ..... .....++.+.....|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~-------------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (494)
T 1wp9_A 224 EMLRDALKPLAETGLLESSS-------------------------------P--DIPKKEVLRAGQIINEEMAKGNHDLR 270 (494)
T ss_dssp HHHHHHHHHHHHHTSSSCCC-------------------------------T--TSCHHHHHHHHHHHHHHHTTTCCSTT
T ss_pred HHHHHHHHHHHHhccccccC-------------------------------C--CcchhHHHHHHHHHHHHhhccccchh
Confidence 11100000000000000000 0 00000 000111111000000
Q ss_pred cccc-----------------------ccccC-------CCC-------CCCCCCccc-------hhhccccCchhHhhh
Q 004098 469 DVAC-----------------------GEFYG-------HSP-------HRDRDTDRS-------FERTDLLNKPAERLS 504 (774)
Q Consensus 469 ~~~~-----------------------~~~~~-------~~~-------~~~~~~~~~-------~~~~~~~~k~~~ll~ 504 (774)
.... ..+.. ... .......+. ........|...+.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 350 (494)
T 1wp9_A 271 GLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKE 350 (494)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 0000 00000 000 000000000 000023445666666
Q ss_pred hccCC---CCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecC--------CCCHHHHHHHHHHHhcCCceEEEEecccc
Q 004098 505 MLQEP---LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNA--------SLPKSQLRRVHTEFHENKLEVVVATIAFG 573 (774)
Q Consensus 505 ~L~~~---~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~--------~l~~~~R~~~~~~F~~g~~~vLVAT~a~~ 573 (774)
+|.+. ..+.++||||++++.++.+++.|...|+.+..+|| +|+.++|.+++++|++|+.+|||||++++
T Consensus 351 ~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~ 430 (494)
T 1wp9_A 351 IIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGE 430 (494)
T ss_dssp HHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGG
T ss_pred HHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccc
Confidence 66654 35779999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCCC
Q 004098 574 MGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622 (774)
Q Consensus 574 ~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~ 622 (774)
+|||+|++++||+||+|+|+..|+||+||+||.|+ |.++.|+...+.+
T Consensus 431 ~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 431 EGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp GGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred cCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 99999999999999999999999999999999998 9999998876543
No 32
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-40 Score=405.00 Aligned_cols=357 Identities=17% Similarity=0.179 Sum_probs=242.5
Q ss_pred HhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHhcCCcEEEE
Q 004098 167 KHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKHGVTACFL 243 (774)
Q Consensus 167 ~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l 243 (774)
..|+|. |+|+|.++|+.+++|++++|++|||+|||++|+++++. .++++||++||++|+.|+++.+.++...+..+
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgll 159 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLM 159 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEE
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEE
Confidence 367885 99999999999999999999999999999999988864 58899999999999999999999864477777
Q ss_pred cCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccc
Q 004098 244 GSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANN 323 (774)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~ 323 (774)
+|+.... ...+|+|+|||+|.+++. .....+.++++|||||||++.+|+ +...+..+. ..
T Consensus 160 tGd~~~~--------~~~~IvV~Tpe~L~~~L~--~~~~~l~~l~lVViDEaH~l~d~~--rg~~~e~il---~~----- 219 (1010)
T 2xgj_A 160 TGDITIN--------PDAGCLVMTTEILRSMLY--RGSEVMREVAWVIFDEVHYMRDKE--RGVVWEETI---IL----- 219 (1010)
T ss_dssp CSSCEEC--------TTCSEEEEEHHHHHHHHH--HTCTTGGGEEEEEEETGGGGGCTT--THHHHHHHH---HH-----
T ss_pred eCCCccC--------CCCCEEEEcHHHHHHHHH--cCcchhhcCCEEEEechhhhcccc--hhHHHHHHH---Hh-----
Confidence 7765432 357999999999987765 333456789999999999999887 444444442 22
Q ss_pred cccccCCCCEEEEeccCCHHHHHHHHHHcC--CCCCceEEEccCCCCCcEEEEeecCCc--------cchhhhHhHHHHH
Q 004098 324 LKSLKFDIPLMALTATATIQVREDILKSLH--MSKGTKFVLTSFFRPNLRFSVKHSKTS--------SRASYKKDFCQLI 393 (774)
Q Consensus 324 ~~~l~~~~~il~lTAT~~~~~~~~i~~~L~--~~~~~~~~~~~~~r~~l~~~v~~~~~~--------~~~~~~~~l~~l~ 393 (774)
++.++++++||||++.. .++..+++ ...+..++.......++...+...... ........+...+
T Consensus 220 ---l~~~~~il~LSATi~n~--~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (1010)
T 2xgj_A 220 ---LPDKVRYVFLSATIPNA--MEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAM 294 (1010)
T ss_dssp ---SCTTCEEEEEECCCTTH--HHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHH
T ss_pred ---cCCCCeEEEEcCCCCCH--HHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHH
Confidence 34489999999998753 23333332 111334444444444444433321100 0000011122211
Q ss_pred HHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccc
Q 004098 394 DIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACG 473 (774)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 473 (774)
..+... ..+ ... ... . .+....... .
T Consensus 295 ~~l~~~--------------~~~---~~~-~~~------~------------~g~~~~~~k-------~----------- 320 (1010)
T 2xgj_A 295 ASISNQ--------------IGD---DPN-STD------S------------RGKKGQTYK-------G----------- 320 (1010)
T ss_dssp HTCC----------------------------------------------------------------------------
T ss_pred HHHhhh--------------hcc---ccc-ccc------c------------ccccccccc-------c-----------
Confidence 110000 000 000 000 0 000000000 0
Q ss_pred cccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCc---------------
Q 004098 474 EFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVK--------------- 538 (774)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~--------------- 538 (774)
. . ...........++..+... ...++||||++++.|+.++..|...++.
T Consensus 321 ----------~----~-~~~~~~~~l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~ 384 (1010)
T 2xgj_A 321 ----------G----S-AKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNA 384 (1010)
T ss_dssp -----------------------CHHHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHH
T ss_pred ----------c----c-ccccchHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 0 0 0000011122233333221 3458999999999999999999775442
Q ss_pred ------------------------eEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEE----eCC-
Q 004098 539 ------------------------AAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH----YGW- 589 (774)
Q Consensus 539 ------------------------~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~----~d~- 589 (774)
+..|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||.
T Consensus 385 ~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~ 464 (1010)
T 2xgj_A 385 IALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQ 464 (1010)
T ss_dssp HTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSS
T ss_pred HHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCc
Confidence 788999999999999999999999999999999999999999999999 999
Q ss_pred ---CCCHHHHHHHhhccccCCC--cceEEEEeeCC
Q 004098 590 ---PQSLEAYYQEAGRAGRDGH--LADCVLYANLS 619 (774)
Q Consensus 590 ---p~s~~~y~Qr~GRaGR~G~--~g~~il~~~~~ 619 (774)
|.|+.+|+||+|||||.|. .|.|+++++..
T Consensus 465 ~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 465 QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp CEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred CCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 9999999999999999997 59999998754
No 33
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.2e-39 Score=376.05 Aligned_cols=371 Identities=16% Similarity=0.162 Sum_probs=243.4
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHhc----
Q 004098 164 LLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKH---- 236 (774)
Q Consensus 164 ~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~~---- 236 (774)
+.++.+|| .|+|+|..+++.+++|+ |+.|+||+|||++|.||+++ .+..++||+||++|+.|..+++..+
T Consensus 75 a~~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~l 151 (844)
T 1tf5_A 75 ASRRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFL 151 (844)
T ss_dssp HHHHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 34457899 99999999999999998 99999999999999999983 5788999999999999988887763
Q ss_pred CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHH-HHHHHHH----HHHHHhcCccEEEEecccccc-cCCCC------
Q 004098 237 GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV-IRLIKPL----QRLAESRGIALFAIDEVHCVS-KWGHD------ 304 (774)
Q Consensus 237 gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l-~~ll~~~----~~~~~~~~i~~iVIDEaH~l~-~~g~~------ 304 (774)
|+++..+.+|.+.... . ....++|+|+||++| .+++... .+...+..+.++||||||+|+ +.+..
T Consensus 152 gl~v~~i~gg~~~~~r--~-~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg 228 (844)
T 1tf5_A 152 GLTVGLNLNSMSKDEK--R-EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISG 228 (844)
T ss_dssp TCCEEECCTTSCHHHH--H-HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEE
T ss_pred CCeEEEEeCCCCHHHH--H-HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcC
Confidence 8999999998875432 2 222479999999999 5655421 112345789999999999997 66521
Q ss_pred ----cHHHHHHHHHHHHHhccc-ccccccCCCCEE-----------------EEeccCCH---HHHHHHHHHcCCCCC-c
Q 004098 305 ----FRPDYRRLSVLRENFGAN-NLKSLKFDIPLM-----------------ALTATATI---QVREDILKSLHMSKG-T 358 (774)
Q Consensus 305 ----fr~~~~~l~~l~~~~~~~-~~~~l~~~~~il-----------------~lTAT~~~---~~~~~i~~~L~~~~~-~ 358 (774)
-...|..+..+...++.. ...--+...+++ ++|||.+. .+...+....-+..+ .
T Consensus 229 ~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~d 308 (844)
T 1tf5_A 229 QAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVD 308 (844)
T ss_dssp EEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTT
T ss_pred CcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCc
Confidence 012344454444444310 000001256666 88999653 222222111111100 1
Q ss_pred eEE-------Ec-----------------------------------------cCCCCCcEEEEeecCCccchhhhHhHH
Q 004098 359 KFV-------LT-----------------------------------------SFFRPNLRFSVKHSKTSSRASYKKDFC 390 (774)
Q Consensus 359 ~~~-------~~-----------------------------------------~~~r~~l~~~v~~~~~~~~~~~~~~l~ 390 (774)
.++ .. .+.+-.-...-. +.....-...|
T Consensus 309 Yiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~Gm---TGTa~te~~e~- 384 (844)
T 1tf5_A 309 YVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGM---TGTAKTEEEEF- 384 (844)
T ss_dssp EEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEE---ESCCGGGHHHH-
T ss_pred eEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccC---CcccchhHHHH-
Confidence 110 00 000000011111 11111222333
Q ss_pred HHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCccccc
Q 004098 391 QLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDV 470 (774)
Q Consensus 391 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 470 (774)
.+.|......-+.......
T Consensus 385 --~~iY~l~vv~IPtn~p~~r----------------------------------------------------------- 403 (844)
T 1tf5_A 385 --RNIYNMQVVTIPTNRPVVR----------------------------------------------------------- 403 (844)
T ss_dssp --HHHHCCCEEECCCSSCCCC-----------------------------------------------------------
T ss_pred --HHHhCCceEEecCCCCccc-----------------------------------------------------------
Confidence 3333321100000000000
Q ss_pred ccccccCCCCCCCCCCccchhhccccCchhHhhhhccCC-CCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHH
Q 004098 471 ACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-LEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKS 549 (774)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~-~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~ 549 (774)
.............|...++..+.+. ..+.++||||+|++.++.|+..|...|+++..+||++.+.
T Consensus 404 --------------~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~r 469 (844)
T 1tf5_A 404 --------------DDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHER 469 (844)
T ss_dssp --------------EECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHH
T ss_pred --------------ccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHH
Confidence 0000000011223444555555432 2456899999999999999999999999999999999888
Q ss_pred HHHHHHHHHhcCCceEEEEecccccCcccC--------CcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCC
Q 004098 550 QLRRVHTEFHENKLEVVVATIAFGMGIDKL--------NVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (774)
Q Consensus 550 ~R~~~~~~F~~g~~~vLVAT~a~~~GIDip--------~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~ 621 (774)
+|..+.+.|+.| .|+|||+++|||+|++ ++.+||+|++|.|.+.|+||+|||||.|.+|.+++|++..|.
T Consensus 470 Er~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 470 EAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp HHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 887777777766 6999999999999999 788999999999999999999999999999999999987763
No 34
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.5e-40 Score=407.45 Aligned_cols=285 Identities=19% Similarity=0.198 Sum_probs=206.4
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc----cCCeEEEEccchHHHHHHHHHHHh
Q 004098 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSK 235 (774)
Q Consensus 160 ~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~----~~~~~LVvsPt~~L~~qq~~~l~~ 235 (774)
.+.+.+.+.+||. | |+|.++|+.+++|+|++++||||+|||+ |++|++. .++++|||+||++|+.|+++.+.+
T Consensus 45 ~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~ 121 (1054)
T 1gku_B 45 EFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRK 121 (1054)
T ss_dssp HHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHH
Confidence 4556677789999 9 9999999999999999999999999998 8888875 478999999999999999999987
Q ss_pred c----CC----cEEEEcCCCChHHH--HHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCc
Q 004098 236 H----GV----TACFLGSGQPDNKV--EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDF 305 (774)
Q Consensus 236 ~----gi----~~~~l~~~~~~~~~--~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~f 305 (774)
+ ++ .+..++|+...... ....+.. ++|+|+||++|.+++.. +.++++|||||||++++||+++
T Consensus 122 l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~------L~~l~~lViDEah~~l~~~~~~ 194 (1054)
T 1gku_B 122 YAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE------LGHFDFIFVDDVDAILKASKNV 194 (1054)
T ss_dssp HHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT------SCCCSEEEESCHHHHHTSTHHH
T ss_pred HHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH------hccCCEEEEeChhhhhhccccH
Confidence 5 56 78888888776542 1222334 89999999999876652 5689999999999999999888
Q ss_pred HHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHH---HHHHH-cCCCCCceEEEccCCCCCcEEEEeecCCcc
Q 004098 306 RPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVRE---DILKS-LHMSKGTKFVLTSFFRPNLRFSVKHSKTSS 381 (774)
Q Consensus 306 r~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~---~i~~~-L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~ 381 (774)
++.+..++..... ....++...|++++|||++.. .. .+... +.+. +.......+++...+.
T Consensus 195 ~~i~~~lgf~~~~----~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~----v~~~~~~~~~i~~~~~------ 259 (1054)
T 1gku_B 195 DKLLHLLGFHYDL----KTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFD----IGSSRITVRNVEDVAV------ 259 (1054)
T ss_dssp HHHHHHTTEEEET----TTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCC----CSCCEECCCCEEEEEE------
T ss_pred HHHHHHhCcchhh----hhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEE----ccCcccCcCCceEEEe------
Confidence 7777765311000 012234478999999999875 21 11111 1110 0000000111111110
Q ss_pred chhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhh
Q 004098 382 RASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLE 461 (774)
Q Consensus 382 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 461 (774)
T Consensus 260 -------------------------------------------------------------------------------- 259 (1054)
T 1gku_B 260 -------------------------------------------------------------------------------- 259 (1054)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEE
Q 004098 462 NDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAA 541 (774)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~ 541 (774)
...+...+..++... ++++||||++++.++.+++.|... +++..
T Consensus 260 ---------------------------------~~~k~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~ 303 (1054)
T 1gku_B 260 ---------------------------------NDESISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGI 303 (1054)
T ss_dssp ---------------------------------SCCCTTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEE
T ss_pred ---------------------------------chhHHHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeE
Confidence 011222223333332 468999999999999999999988 99999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEE----ecccccCcccCCc-ceEEEeCCC
Q 004098 542 YNASLPKSQLRRVHTEFHENKLEVVVA----TIAFGMGIDKLNV-RRIIHYGWP 590 (774)
Q Consensus 542 ~h~~l~~~~R~~~~~~F~~g~~~vLVA----T~a~~~GIDip~V-~~VI~~d~p 590 (774)
+||++ .+++++|++|+++|||| |+++++|||+|+| ++|||||+|
T Consensus 304 lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 304 VTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp CTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred EeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 99998 47889999999999999 8999999999996 999999999
No 35
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.5e-39 Score=379.10 Aligned_cols=310 Identities=19% Similarity=0.228 Sum_probs=228.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHH
Q 004098 160 KVNSLLKKHFGHSSLKNFQKEALSAWLAH------HDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQC 230 (774)
Q Consensus 160 ~l~~~L~~~~g~~~~r~~Q~~ai~~il~g------~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~ 230 (774)
.+.+.+.+.++| .||++|.++|+.++++ +|+++++|||+|||++|++|++. .+..++|++||++|+.|++
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~ 434 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHY 434 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHH
Confidence 344444457899 8999999999999875 69999999999999999999875 4889999999999999999
Q ss_pred HHHHhc----CCcEEEEcCCCChHHH---HHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCC
Q 004098 231 SKLSKH----GVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303 (774)
Q Consensus 231 ~~l~~~----gi~~~~l~~~~~~~~~---~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~ 303 (774)
+.+.++ ++++..++++...... ...+..+.++|+|+||+.+.+ ...+.++++|||||||++ |.
T Consensus 435 ~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------~~~~~~l~lVVIDEaHr~---g~ 504 (780)
T 1gm5_A 435 RRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-------DVHFKNLGLVIIDEQHRF---GV 504 (780)
T ss_dssp HHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-------CCCCSCCCEEEEESCCCC-----
T ss_pred HHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-------hhhccCCceEEecccchh---hH
Confidence 999875 7899999988876442 234456779999999987632 234678999999999996 32
Q ss_pred CcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEc-cCCCCCcEEEEeecCCccc
Q 004098 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLT-SFFRPNLRFSVKHSKTSSR 382 (774)
Q Consensus 304 ~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~-~~~r~~l~~~v~~~~~~~~ 382 (774)
..+. .+.......++++||||+.+....... .+.. +..++.. ...+.++...+...
T Consensus 505 ~qr~---------------~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~-~~s~i~~~p~~r~~i~~~~~~~----- 561 (780)
T 1gm5_A 505 KQRE---------------ALMNKGKMVDTLVMSATPIPRSMALAF--YGDL-DVTVIDEMPPGRKEVQTMLVPM----- 561 (780)
T ss_dssp ---C---------------CCCSSSSCCCEEEEESSCCCHHHHHHH--TCCS-SCEEECCCCSSCCCCEECCCCS-----
T ss_pred HHHH---------------HHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCc-ceeeeeccCCCCcceEEEEecc-----
Confidence 2211 022223478999999999887655332 2211 1111110 11112221111100
Q ss_pred hhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhc
Q 004098 383 ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (774)
Q Consensus 383 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (774)
T Consensus 562 -------------------------------------------------------------------------------- 561 (780)
T 1gm5_A 562 -------------------------------------------------------------------------------- 561 (780)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCC-CCCCcEEEEeCch--------HHHHHHHHHHH
Q 004098 463 DSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-LEDGLTIIYVPTR--------KETLSIAKYLC 533 (774)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~-~~~~~~IIF~~sr--------~~~~~l~~~L~ 533 (774)
.+...++..+.+. ..+.+++|||++. ..++.+++.|.
T Consensus 562 ----------------------------------~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~ 607 (780)
T 1gm5_A 562 ----------------------------------DRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLS 607 (780)
T ss_dssp ----------------------------------STHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGG
T ss_pred ----------------------------------chHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHH
Confidence 0011111111111 1355789999865 45788899998
Q ss_pred h---CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCC-CHHHHHHHhhccccCCCc
Q 004098 534 G---FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQ-SLEAYYQEAGRAGRDGHL 609 (774)
Q Consensus 534 ~---~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~-s~~~y~Qr~GRaGR~G~~ 609 (774)
+ .++.+..+||+|++++|..++++|++|+++|||||+++++|||+|++++||+++.|. +...|.||+||+||.|+.
T Consensus 608 ~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~ 687 (780)
T 1gm5_A 608 KEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQE 687 (780)
T ss_dssp GSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTT
T ss_pred hhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCC
Confidence 8 478999999999999999999999999999999999999999999999999999996 788999999999999999
Q ss_pred ceEEEEee
Q 004098 610 ADCVLYAN 617 (774)
Q Consensus 610 g~~il~~~ 617 (774)
|.|+++++
T Consensus 688 g~~ill~~ 695 (780)
T 1gm5_A 688 AYCFLVVG 695 (780)
T ss_dssp CEEECCCC
T ss_pred CEEEEEEC
Confidence 99999986
No 36
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5.9e-38 Score=396.74 Aligned_cols=329 Identities=20% Similarity=0.231 Sum_probs=238.7
Q ss_pred CCCCCCHHHHHHHHHHHc-CCCEEEEecCCCchHHHHHHhhhc-----cCCeEEEEccchHHHHHHHHHHHh-----cCC
Q 004098 170 GHSSLKNFQKEALSAWLA-HHDCLVLAATGSGKSLCFQIPALL-----TGKVVVVISPLISLMHDQCSKLSK-----HGV 238 (774)
Q Consensus 170 g~~~~r~~Q~~ai~~il~-g~d~lv~apTGsGKTl~~~lpal~-----~~~~~LVvsPt~~L~~qq~~~l~~-----~gi 238 (774)
+|..|+|+|.++++.++. ++|++|+||||||||++|.+|++. .++++|||+|+++|+.|+++.+.+ .|+
T Consensus 923 ~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~ 1002 (1724)
T 4f92_B 923 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNK 1002 (1724)
T ss_dssp TCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCC
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCC
Confidence 688899999999999986 568999999999999999999874 367999999999999999998865 367
Q ss_pred cEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHH
Q 004098 239 TACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLREN 318 (774)
Q Consensus 239 ~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~ 318 (774)
++..++|+..... .. ...++|+|+|||++..++........+.++++|||||+|++.+. ..+.+..+......
T Consensus 1003 ~V~~ltGd~~~~~---~~-~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~---rg~~le~il~rl~~ 1075 (1724)
T 4f92_B 1003 KVVLLTGETSTDL---KL-LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE---NGPVLEVICSRMRY 1075 (1724)
T ss_dssp CEEECCSCHHHHH---HH-HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST---THHHHHHHHHHHHH
T ss_pred EEEEEECCCCcch---hh-cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC---CCccHHHHHHHHHH
Confidence 8888777643221 11 23469999999998766653333334678999999999999763 24444333221111
Q ss_pred hcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCC-CcEEEEeecCCccchhhhHhHHHHHHHHH
Q 004098 319 FGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP-NLRFSVKHSKTSSRASYKKDFCQLIDIYT 397 (774)
Q Consensus 319 ~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~-~l~~~v~~~~~~~~~~~~~~l~~l~~~~~ 397 (774)
. ....+.++|+++||||.+. .+++.++|+.............|| ++...+........ ...+..+
T Consensus 1076 i----~~~~~~~~riI~lSATl~N--~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~---~~~~~~~----- 1141 (1724)
T 4f92_B 1076 I----SSQIERPIRIVALSSSLSN--AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHT---QTRLLSM----- 1141 (1724)
T ss_dssp H----HHTTSSCCEEEEEESCBTT--HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSH---HHHHHTT-----
T ss_pred H----HhhcCCCceEEEEeCCCCC--HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCc---hhhhhhh-----
Confidence 1 1123347899999999974 578999998775544444444455 34444432221110 0000000
Q ss_pred hhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccC
Q 004098 398 KKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYG 477 (774)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 477 (774)
T Consensus 1142 -------------------------------------------------------------------------------- 1141 (1724)
T 4f92_B 1142 -------------------------------------------------------------------------------- 1141 (1724)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhC----------------------
Q 004098 478 HSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF---------------------- 535 (774)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~---------------------- 535 (774)
...+...+.+....+++||||+||+.|+.++..|...
T Consensus 1142 ---------------------~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l 1200 (1724)
T 4f92_B 1142 ---------------------AKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYL 1200 (1724)
T ss_dssp ---------------------HHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHH
T ss_pred ---------------------cchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHH
Confidence 0001111122225678999999999999998876431
Q ss_pred ------------CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEE----------eCCCCCH
Q 004098 536 ------------GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH----------YGWPQSL 593 (774)
Q Consensus 536 ------------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~----------~d~p~s~ 593 (774)
...+..|||||++++|..+++.|++|.++|||||+++++|||+|.+++||. ...|.++
T Consensus 1201 ~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~ 1280 (1724)
T 4f92_B 1201 EKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPI 1280 (1724)
T ss_dssp TTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCH
T ss_pred hhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCH
Confidence 235889999999999999999999999999999999999999999999982 3347799
Q ss_pred HHHHHHhhccccCCC--cceEEEEeeCCC
Q 004098 594 EAYYQEAGRAGRDGH--LADCVLYANLSS 620 (774)
Q Consensus 594 ~~y~Qr~GRaGR~G~--~g~~il~~~~~~ 620 (774)
.+|+||+|||||.|. .|.|++++...+
T Consensus 1281 ~~~~Qm~GRAGR~g~d~~G~avll~~~~~ 1309 (1724)
T 4f92_B 1281 YDVLQMVGHANRPLQDDEGRCVIMCQGSK 1309 (1724)
T ss_dssp HHHHHHHTTBCCTTTCSCEEEEEEEEGGG
T ss_pred HHHHHhhccccCCCCCCceEEEEEecchH
Confidence 999999999999997 799999987554
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.5e-38 Score=402.15 Aligned_cols=330 Identities=22% Similarity=0.245 Sum_probs=237.5
Q ss_pred CCCCCCHHHHHHHHHHHc-CCCEEEEecCCCchHHHHHHhhhc--------------cCCeEEEEccchHHHHHHHHHHH
Q 004098 170 GHSSLKNFQKEALSAWLA-HHDCLVLAATGSGKSLCFQIPALL--------------TGKVVVVISPLISLMHDQCSKLS 234 (774)
Q Consensus 170 g~~~~r~~Q~~ai~~il~-g~d~lv~apTGsGKTl~~~lpal~--------------~~~~~LVvsPt~~L~~qq~~~l~ 234 (774)
||.+|+++|.++++.++. ++|++|+||||||||++|.++++. .+.++|+|+|+++|++|+++.|.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999999885 789999999999999999999873 25689999999999999999987
Q ss_pred h----cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc-CCCCcHHHH
Q 004098 235 K----HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK-WGHDFRPDY 309 (774)
Q Consensus 235 ~----~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~-~g~~fr~~~ 309 (774)
+ +|+++..++|+...... ....++|+|+|||++..++........+.++++|||||+|.+.+ .|..+...+
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~----~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE----EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT----TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc----ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHH
Confidence 6 48899988887654221 12357999999999865544211122357899999999998864 332222223
Q ss_pred HHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCc-eEEEccCCCC-CcEEEEeecCCccchhhhH
Q 004098 310 RRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGT-KFVLTSFFRP-NLRFSVKHSKTSSRASYKK 387 (774)
Q Consensus 310 ~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~-~~~~~~~~r~-~l~~~v~~~~~~~~~~~~~ 387 (774)
.++...... +++.+|+|+||||.++ .+++.++|+..... ..+..+..|| ++...+........ ..
T Consensus 232 ~rl~~~~~~--------~~~~~riI~LSATl~N--~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~---~~ 298 (1724)
T 4f92_B 232 ARAIRNIEM--------TQEDVRLIGLSATLPN--YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKA---IK 298 (1724)
T ss_dssp HHHHHHHHH--------HTCCCEEEEEECSCTT--HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCH---HH
T ss_pred HHHHHHHHh--------CCCCCcEEEEecccCC--HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcch---hh
Confidence 333222222 2347899999999864 57788899754221 2233333344 33332221111100 00
Q ss_pred hHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcc
Q 004098 388 DFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDD 467 (774)
Q Consensus 388 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (774)
.+..+-
T Consensus 299 ~~~~~~-------------------------------------------------------------------------- 304 (1724)
T 4f92_B 299 RFQIMN-------------------------------------------------------------------------- 304 (1724)
T ss_dssp HHHHHH--------------------------------------------------------------------------
T ss_pred hhHHHH--------------------------------------------------------------------------
Confidence 000000
Q ss_pred cccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhC------------
Q 004098 468 WDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF------------ 535 (774)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~------------ 535 (774)
..+.+.+.+....+++||||+||+.|+.+|+.|.+.
T Consensus 305 --------------------------------~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~ 352 (1724)
T 4f92_B 305 --------------------------------EIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLR 352 (1724)
T ss_dssp --------------------------------HHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSS
T ss_pred --------------------------------HHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcc
Confidence 011122223335668999999999999999888641
Q ss_pred -------------------------CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEE----
Q 004098 536 -------------------------GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH---- 586 (774)
Q Consensus 536 -------------------------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~---- 586 (774)
...++.|||||++++|..+++.|++|.++|||||+++++|||+|.+++||+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~ 432 (1724)
T 4f92_B 353 EGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV 432 (1724)
T ss_dssp CCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEE
T ss_pred cchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEE
Confidence 234789999999999999999999999999999999999999999999996
Q ss_pred eC------CCCCHHHHHHHhhccccCC--CcceEEEEeeCCCCC
Q 004098 587 YG------WPQSLEAYYQEAGRAGRDG--HLADCVLYANLSSMP 622 (774)
Q Consensus 587 ~d------~p~s~~~y~Qr~GRaGR~G--~~g~~il~~~~~~~~ 622 (774)
|+ .|-++.+|.||+|||||.| ..|.++++.+..+..
T Consensus 433 ~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~ 476 (1724)
T 4f92_B 433 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQ 476 (1724)
T ss_dssp EETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCC
T ss_pred ecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHH
Confidence 44 3568999999999999987 479999998877654
No 38
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.3e-37 Score=383.58 Aligned_cols=312 Identities=20% Similarity=0.230 Sum_probs=234.2
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHc----CC--CEEEEecCCCchHHHHHHhhh---ccCCeEEEEccchHHHHHHH
Q 004098 160 KVNSLLKKHFGHSSLKNFQKEALSAWLA----HH--DCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQC 230 (774)
Q Consensus 160 ~l~~~L~~~~g~~~~r~~Q~~ai~~il~----g~--d~lv~apTGsGKTl~~~lpal---~~~~~~LVvsPt~~L~~qq~ 230 (774)
...+.+...|+|. +||+|.++|+.+++ ++ |+|+++|||+|||++|+++++ ..++.++||+||++|+.|++
T Consensus 591 ~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~ 669 (1151)
T 2eyq_A 591 EQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHY 669 (1151)
T ss_dssp HHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHH
T ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHH
Confidence 3444555678995 79999999999986 66 999999999999999988875 46789999999999999999
Q ss_pred HHHHhc----CCcEEEEcCCCChHHH---HHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCC
Q 004098 231 SKLSKH----GVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303 (774)
Q Consensus 231 ~~l~~~----gi~~~~l~~~~~~~~~---~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~ 303 (774)
+.+.++ ++.+..+++....... ...+..+.++|+|+||+.+.. .+.+.++++|||||||++ |.
T Consensus 670 ~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~-------~~~~~~l~lvIiDEaH~~---g~ 739 (1151)
T 2eyq_A 670 DNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS-------DVKFKDLGLLIVDEEHRF---GV 739 (1151)
T ss_dssp HHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS-------CCCCSSEEEEEEESGGGS---CH
T ss_pred HHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC-------CccccccceEEEechHhc---Ch
Confidence 999863 5788888776655332 233456779999999986632 234678999999999995 42
Q ss_pred CcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEE-ccCCCCCcEEEEeecCCccc
Q 004098 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVL-TSFFRPNLRFSVKHSKTSSR 382 (774)
Q Consensus 304 ~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~-~~~~r~~l~~~v~~~~~~~~ 382 (774)
.. ...+..+ +.++++++||||+.+.........+ . +..++. ....+.++...+....
T Consensus 740 ~~---~~~l~~l------------~~~~~vl~lSATp~p~~l~~~~~~~--~-~~~~i~~~~~~r~~i~~~~~~~~---- 797 (1151)
T 2eyq_A 740 RH---KERIKAM------------RANVDILTLTATPIPRTLNMAMSGM--R-DLSIIATPPARRLAVKTFVREYD---- 797 (1151)
T ss_dssp HH---HHHHHHH------------HTTSEEEEEESSCCCHHHHHHHTTT--S-EEEECCCCCCBCBCEEEEEEECC----
T ss_pred HH---HHHHHHh------------cCCCCEEEEcCCCChhhHHHHHhcC--C-CceEEecCCCCccccEEEEecCC----
Confidence 22 2222221 1268899999999888766544322 2 111111 1111122222111100
Q ss_pred hhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhc
Q 004098 383 ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (774)
Q Consensus 383 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (774)
T Consensus 798 -------------------------------------------------------------------------------- 797 (1151)
T 2eyq_A 798 -------------------------------------------------------------------------------- 797 (1151)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhC--CCceE
Q 004098 463 DSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGF--GVKAA 540 (774)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~--g~~~~ 540 (774)
+......++.+...+++++|||++++.++.+++.|.+. ++++.
T Consensus 798 -----------------------------------~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~ 842 (1151)
T 2eyq_A 798 -----------------------------------SMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIA 842 (1151)
T ss_dssp -----------------------------------HHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEE
T ss_pred -----------------------------------HHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEE
Confidence 00000001111124678999999999999999999987 88999
Q ss_pred EecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCC-CCCHHHHHHHhhccccCCCcceEEEEeeCC
Q 004098 541 AYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW-PQSLEAYYQEAGRAGRDGHLADCVLYANLS 619 (774)
Q Consensus 541 ~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~-p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~ 619 (774)
.+||+|++++|++++++|++|+++|||||+++++|||+|++++||.++. +.++..|+||+||+||.|+.|.|++++...
T Consensus 843 ~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 843 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp ECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred EEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999999999999999999999999999999999999999999999998 579999999999999999999999998654
No 39
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=3.6e-37 Score=354.29 Aligned_cols=374 Identities=16% Similarity=0.159 Sum_probs=225.5
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHhc---
Q 004098 163 SLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKH--- 236 (774)
Q Consensus 163 ~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~~--- 236 (774)
++-++.+|. .|+|+|..+++.+++|+ |+.|+||+|||++|.+|++. .+..++||+||++|+.|..+.+..+
T Consensus 65 ea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 65 EASKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 444556787 79999999999999998 99999999999999999974 5778999999999999988888764
Q ss_pred -CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHH-HHHHHHH----HHHHHhcCccEEEEecccccc-cCCCC-----
Q 004098 237 -GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV-IRLIKPL----QRLAESRGIALFAIDEVHCVS-KWGHD----- 304 (774)
Q Consensus 237 -gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l-~~ll~~~----~~~~~~~~i~~iVIDEaH~l~-~~g~~----- 304 (774)
|+++..+++|.+... +.. ..+++|+|+||++| .+++... .+...+.++.++||||||+|+ +.|..
T Consensus 142 lgl~v~~i~GG~~~~~--r~~-~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiS 218 (853)
T 2fsf_A 142 LGLTVGINLPGMPAPA--KRE-AYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIIS 218 (853)
T ss_dssp TTCCEEECCTTCCHHH--HHH-HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEE
T ss_pred cCCeEEEEeCCCCHHH--HHH-hcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccccc
Confidence 899999999887532 222 22479999999998 5766521 112345789999999999998 55410
Q ss_pred -----cHHHHHHHHHHHHHhccc------------ccccccCCCCEE------------------------EEeccCCH-
Q 004098 305 -----FRPDYRRLSVLRENFGAN------------NLKSLKFDIPLM------------------------ALTATATI- 342 (774)
Q Consensus 305 -----fr~~~~~l~~l~~~~~~~------------~~~~l~~~~~il------------------------~lTAT~~~- 342 (774)
-...|..+..+...++.. .+.--+...+++ ++|||.+.
T Consensus 219 g~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~ 298 (853)
T 2fsf_A 219 GPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIML 298 (853)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred CCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchH
Confidence 001233333333333210 000000123332 78888643
Q ss_pred --HHHHHHHHHcCCCCC--------ceEEEcc--------------------------CCCCCcEEE-Ee----------
Q 004098 343 --QVREDILKSLHMSKG--------TKFVLTS--------------------------FFRPNLRFS-VK---------- 375 (774)
Q Consensus 343 --~~~~~i~~~L~~~~~--------~~~~~~~--------------------------~~r~~l~~~-v~---------- 375 (774)
.+...+....-+..+ ..++... ....+.... +.
T Consensus 299 ~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~k 378 (853)
T 2fsf_A 299 MHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEK 378 (853)
T ss_dssp ----------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSE
T ss_pred HHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhh
Confidence 111111000000000 0000000 000010000 00
Q ss_pred -ecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccc
Q 004098 376 -HSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKE 454 (774)
Q Consensus 376 -~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (774)
...+.....-...|.++.. ..... +|....
T Consensus 379 l~GmTGTa~te~~ef~~iY~---l~vv~-------IPtn~p--------------------------------------- 409 (853)
T 2fsf_A 379 LAGMTGTADTEAFEFSSIYK---LDTVV-------VPTNRP--------------------------------------- 409 (853)
T ss_dssp EEEEECTTCCCHHHHHHHHC---CEEEE-------CCCSSC---------------------------------------
T ss_pred hhcCCCCchhHHHHHHHHhC---CcEEE-------cCCCCC---------------------------------------
Confidence 0011111122233444433 21100 000000
Q ss_pred hhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCC-CCCCcEEEEeCchHHHHHHHHHHH
Q 004098 455 MSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEP-LEDGLTIIYVPTRKETLSIAKYLC 533 (774)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~-~~~~~~IIF~~sr~~~~~l~~~L~ 533 (774)
.... ............|...+...+.+. ..+.++||||+|+..++.|++.|.
T Consensus 410 --------------------------~~R~-d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~ 462 (853)
T 2fsf_A 410 --------------------------MIRK-DLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELT 462 (853)
T ss_dssp --------------------------CCCE-ECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred --------------------------ceee-cCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHH
Confidence 0000 000000111223555556655443 245689999999999999999999
Q ss_pred hCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCC--------------------------------c
Q 004098 534 GFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLN--------------------------------V 581 (774)
Q Consensus 534 ~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~--------------------------------V 581 (774)
+.|+++..+||++.+.++..+.++|+.| .|+|||+++|||+||+. |
T Consensus 463 ~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 540 (853)
T 2fsf_A 463 KAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAV 540 (853)
T ss_dssp HTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHH
Confidence 9999999999999988888888999988 69999999999999987 4
Q ss_pred -----ceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 582 -----RRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 582 -----~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
.+||+|+.|.|...|.||+|||||.|.+|.+++|++..|
T Consensus 541 ~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 541 LEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 599999999999999999999999999999999998776
No 40
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=6.7e-39 Score=363.77 Aligned_cols=345 Identities=15% Similarity=0.148 Sum_probs=223.8
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcCCc-EEEEcCCCChHH
Q 004098 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVT-ACFLGSGQPDNK 251 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~-~~~l~~~~~~~~ 251 (774)
.|+|+|.++++.+++++++++++|||+|||++|++++...++.+|||+|+++|+.||.+++.++++. +..++++...
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-- 170 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-- 170 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC--
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC--
Confidence 6999999999999999999999999999999999999888999999999999999999999999999 8777776543
Q ss_pred HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCC
Q 004098 252 VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331 (774)
Q Consensus 252 ~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~ 331 (774)
..+|+|+||+++...+..+ ..++++|||||||++...+ |+. +...++ ..
T Consensus 171 --------~~~Ivv~T~~~l~~~~~~~-----~~~~~liIvDEaH~~~~~~--~~~-------~~~~~~---------~~ 219 (472)
T 2fwr_A 171 --------LKPLTVSTYDSAYVNAEKL-----GNRFMLLIFDEVHHLPAES--YVQ-------IAQMSI---------AP 219 (472)
T ss_dssp --------CCSEEEEEHHHHHHTHHHH-----TTTCSEEEEETGGGTTSTT--THH-------HHHTCC---------CS
T ss_pred --------cCCEEEEEcHHHHHHHHHh-----cCCCCEEEEECCcCCCChH--HHH-------HHHhcC---------CC
Confidence 4689999999887654421 2469999999999998765 543 222232 57
Q ss_pred CEEEEeccCCHHHH--HHHHHHcCCCCCceEEEc-------cCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcc
Q 004098 332 PLMALTATATIQVR--EDILKSLHMSKGTKFVLT-------SFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKT 402 (774)
Q Consensus 332 ~il~lTAT~~~~~~--~~i~~~L~~~~~~~~~~~-------~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 402 (774)
++++|||||..... ..+...++ +.++.. .+..+.....+....... ....+..+...+......
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~ 292 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVG----GKVFELFPDSLAGKHLAKYTIKRIFVPLAED---ERVEYEKREKVYKQFLRA 292 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTC----CEEEECCHHHHTSCCCCSEEECCEEECCCHH---HHHHTTTTTHHHHSCSSS
T ss_pred eEEEEecCccCCCCHHHHHHHHhC----CeEeecCHHHHhcCcCCCeEEEEEEcCCCHH---HHHHHHHHHHHHHHHHHh
Confidence 89999999973211 11222221 111110 011111111111100000 000000000000000000
Q ss_pred cccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCC
Q 004098 403 GEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHR 482 (774)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 482 (774)
..+. .........++...... ...........
T Consensus 293 ----~~~~--------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------------------- 324 (472)
T 2fwr_A 293 ----RGIT--------------------LRRAEDFNKIVMASGYD--ERAYEALRAWE---------------------- 324 (472)
T ss_dssp ----CCCT--------------------TTCCSSSTTTTTTTCCS--SSSSTTTHHHH----------------------
T ss_pred ----cCcc--------------------ccchhhHHHHHHHhccC--HHHHHHHHHHH----------------------
Confidence 0000 00000000000000000 00000000000
Q ss_pred CCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC
Q 004098 483 DRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENK 562 (774)
Q Consensus 483 ~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~ 562 (774)
...........+...+.++|.. ..+.++||||++++.++.+++.|. +..+||+++..+|++++++|++|+
T Consensus 325 ----~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~ 394 (472)
T 2fwr_A 325 ----EARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGR 394 (472)
T ss_dssp ----HHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSS
T ss_pred ----HHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCC
Confidence 0000011223445555555655 467799999999999999999983 678999999999999999999999
Q ss_pred ceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCc-ceEEEE
Q 004098 563 LEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL-ADCVLY 615 (774)
Q Consensus 563 ~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~-g~~il~ 615 (774)
++|||||+++++|||+|++++||+|+.|+|+..|+||+||+||.|+. +.+++|
T Consensus 395 ~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 395 FRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp CSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred CCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999965 455543
No 41
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=5.4e-38 Score=359.87 Aligned_cols=323 Identities=14% Similarity=0.078 Sum_probs=220.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc----cCCeEEEEccchHHHHHHHHHHHhcC----CcEEEEc
Q 004098 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSKHG----VTACFLG 244 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~----~~~~~LVvsPt~~L~~qq~~~l~~~g----i~~~~l~ 244 (774)
.|||+|.++++.+++++|+++++|||+|||++|++++.. ..+++|||+|+++|+.|+++.+.+++ +.+..+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~ 192 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEe
Confidence 799999999999999999999999999999999998875 34599999999999999999999873 4677777
Q ss_pred CCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhccccc
Q 004098 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324 (774)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~ 324 (774)
++...... ..+..+|+|+||+.|.+. ....+.++++|||||||++.. +.+..+ +
T Consensus 193 ~~~~~~~~----~~~~~~I~i~T~~~l~~~-----~~~~~~~~~liIiDE~H~~~~------~~~~~i-----------l 246 (510)
T 2oca_A 193 GGASKDDK----YKNDAPVVVGTWQTVVKQ-----PKEWFSQFGMMMNDECHLATG------KSISSI-----------I 246 (510)
T ss_dssp GGCCTTGG----GCTTCSEEEEEHHHHTTS-----CGGGGGGEEEEEEETGGGCCH------HHHHHH-----------G
T ss_pred cCCccccc----cccCCcEEEEeHHHHhhc-----hhhhhhcCCEEEEECCcCCCc------ccHHHH-----------H
Confidence 77655321 456789999999977542 112356799999999999964 334433 2
Q ss_pred ccccCCCCEEEEeccCCHHHHH--HHHHHcCCCC----CceEEEccCCCCCcEEEEeecCCccchhhh--HhHHHHHHHH
Q 004098 325 KSLKFDIPLMALTATATIQVRE--DILKSLHMSK----GTKFVLTSFFRPNLRFSVKHSKTSSRASYK--KDFCQLIDIY 396 (774)
Q Consensus 325 ~~l~~~~~il~lTAT~~~~~~~--~i~~~L~~~~----~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~--~~l~~l~~~~ 396 (774)
..++...++++|||||+..... .+...++... ........+..+.....+............ ..+......+
T Consensus 247 ~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (510)
T 2oca_A 247 SGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKII 326 (510)
T ss_dssp GGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHH
T ss_pred HhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHH
Confidence 2333477899999999654322 1122222100 000000011111111111100000000000 0000000000
Q ss_pred HhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCccccccccccc
Q 004098 397 TKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFY 476 (774)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 476 (774)
T Consensus 327 -------------------------------------------------------------------------------- 326 (510)
T 2oca_A 327 -------------------------------------------------------------------------------- 326 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCccchhhccccCchhHhhhhccCCC--CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHH
Q 004098 477 GHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL--EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRV 554 (774)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~--~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~ 554 (774)
.....+...+.+.+.+.. ...++||||+ ++.++.+++.|.+.+.++..+||+|++++|.++
T Consensus 327 ----------------~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i 389 (510)
T 2oca_A 327 ----------------TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIM 389 (510)
T ss_dssp ----------------HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHH
T ss_pred ----------------hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHH
Confidence 000011111222222211 2346677777 889999999999998899999999999999999
Q ss_pred HHHHhcCCceEEEEe-cccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeC
Q 004098 555 HTEFHENKLEVVVAT-IAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL 618 (774)
Q Consensus 555 ~~~F~~g~~~vLVAT-~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~ 618 (774)
+++|++|+.+||||| +++++|||+|++++||+++.|+|+..|+|++||+||.|+.+.++++++.
T Consensus 390 ~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~ 454 (510)
T 2oca_A 390 KTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDL 454 (510)
T ss_dssp HHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEE
T ss_pred HHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEe
Confidence 999999999999999 9999999999999999999999999999999999999998866666653
No 42
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=9.4e-37 Score=350.89 Aligned_cols=376 Identities=14% Similarity=0.125 Sum_probs=246.2
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---cCCeEEEEccchHHHHHHHHHHHhc-
Q 004098 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---TGKVVVVISPLISLMHDQCSKLSKH- 236 (774)
Q Consensus 161 l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---~~~~~LVvsPt~~L~~qq~~~l~~~- 236 (774)
+.++.++.+|+ .|+++|..+++.+++|+ |+.|+||+|||++|.+|+++ .+..++||+||++|+.|..+++..+
T Consensus 100 vrEa~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 100 AREAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp HHHHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 34455567899 89999999999999998 99999999999999999964 5778999999999999888887763
Q ss_pred ---CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHH-HHHHHHH----HHHHHhcCccEEEEecccccc-cCCC----
Q 004098 237 ---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV-IRLIKPL----QRLAESRGIALFAIDEVHCVS-KWGH---- 303 (774)
Q Consensus 237 ---gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l-~~ll~~~----~~~~~~~~i~~iVIDEaH~l~-~~g~---- 303 (774)
|+++.++.+|.+.... .. ...++|+|+||++| .+++... .+...+..+.++||||||+|+ +.+.
T Consensus 177 ~~lGLsv~~i~gg~~~~~r--~~-~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 177 RFLGLQVGVILATMTPDER--RV-AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHTTCCEEECCTTCCHHHH--HH-HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred hhcCCeEEEEeCCCCHHHH--HH-hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 8999999998875322 22 22479999999999 5666521 112445789999999999997 4331
Q ss_pred ------CcHHHHHHHHHHHHHhccc-ccccccCCCCEE-----------------EEeccCCH---HHHHHHHHHcCCCC
Q 004098 304 ------DFRPDYRRLSVLRENFGAN-NLKSLKFDIPLM-----------------ALTATATI---QVREDILKSLHMSK 356 (774)
Q Consensus 304 ------~fr~~~~~l~~l~~~~~~~-~~~~l~~~~~il-----------------~lTAT~~~---~~~~~i~~~L~~~~ 356 (774)
+-...|..+..+...++.. ...--+...+++ ++|||.+. .+...+....-+..
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 0123455555555555410 000001356777 88899753 23222222111111
Q ss_pred C-ceE-------EEccCCC---C----------------Cc-------EEE-Ee-----------ecCCccchhhhHhHH
Q 004098 357 G-TKF-------VLTSFFR---P----------------NL-------RFS-VK-----------HSKTSSRASYKKDFC 390 (774)
Q Consensus 357 ~-~~~-------~~~~~~r---~----------------~l-------~~~-v~-----------~~~~~~~~~~~~~l~ 390 (774)
+ ..+ +...+.. + .+ ... +. ...+... ...-.
T Consensus 334 d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa---~te~~ 410 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTA---QTEAA 410 (922)
T ss_dssp TTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCC---GGGHH
T ss_pred ccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCc---hhHHH
Confidence 1 111 1111100 0 00 000 00 0000000 01112
Q ss_pred HHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCccccc
Q 004098 391 QLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDV 470 (774)
Q Consensus 391 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 470 (774)
.+.+.|......-+...... +
T Consensus 411 Ef~~iY~l~vv~IPtn~p~~------------------------------------------R----------------- 431 (922)
T 1nkt_A 411 ELHEIYKLGVVSIPTNMPMI------------------------------------------R----------------- 431 (922)
T ss_dssp HHHHHHCCEEEECCCSSCCC------------------------------------------C-----------------
T ss_pred HHHHHhCCCeEEeCCCCCcc------------------------------------------c-----------------
Confidence 23333333211000000000 0
Q ss_pred ccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCC-CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHH
Q 004098 471 ACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKS 549 (774)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~-~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~ 549 (774)
.+ ...........|...++..+.+.. .+.++||||.|+..++.|++.|.+.|+++..+||++.+.
T Consensus 432 -------------~d-~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~r 497 (922)
T 1nkt_A 432 -------------ED-QSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQ 497 (922)
T ss_dssp -------------EE-CCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHH
T ss_pred -------------cc-CCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHH
Confidence 00 000000112234555555554432 456899999999999999999999999999999999888
Q ss_pred HHHHHHHHHhcCCceEEEEecccccCcccCCc------------------------------------------------
Q 004098 550 QLRRVHTEFHENKLEVVVATIAFGMGIDKLNV------------------------------------------------ 581 (774)
Q Consensus 550 ~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V------------------------------------------------ 581 (774)
++..+.++|+.| .|+|||+++|||+||+.+
T Consensus 498 Ea~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 575 (922)
T 1nkt_A 498 EATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVI 575 (922)
T ss_dssp HHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 888888888888 699999999999999975
Q ss_pred ----ceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 582 ----RRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 582 ----~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
.+||+|+.|.|...|.|++|||||.|.+|.+++|++..|
T Consensus 576 ~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD 618 (922)
T 1nkt_A 576 EAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGD 618 (922)
T ss_dssp HTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTS
T ss_pred hcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhH
Confidence 599999999999999999999999999999999998776
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2.2e-37 Score=348.05 Aligned_cols=283 Identities=16% Similarity=0.123 Sum_probs=204.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCE-EEEecCCCchHHHHHHhhhc----cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEc
Q 004098 170 GHSSLKNFQKEALSAWLAHHDC-LVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSKHGVTACFLG 244 (774)
Q Consensus 170 g~~~~r~~Q~~ai~~il~g~d~-lv~apTGsGKTl~~~lpal~----~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~ 244 (774)
|+.+++|+|. +|+.+++++|+ ++++|||||||++|++|++. .++++||++||++|+.|+.+.+... .+....
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~ 77 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL--PIRYQT 77 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS--CEEECC
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc--eeeeee
Confidence 6788999985 79999999887 88999999999999999864 4779999999999999999998643 332222
Q ss_pred CCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhccccc
Q 004098 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324 (774)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~ 324 (774)
..... .......|.++|++.+.+.+. ....+.++++|||||||++ +++ +......+. .+..
T Consensus 78 ~~~~~------~~~~~~~i~~~t~~~l~~~l~---~~~~l~~~~~iViDEah~~-~~~--~~~~~~~~~-~~~~------ 138 (451)
T 2jlq_A 78 PAVKS------DHTGREIVDLMCHATFTTRLL---SSTRVPNYNLIVMDEAHFT-DPC--SVAARGYIS-TRVE------ 138 (451)
T ss_dssp TTCSC------CCCSSCCEEEEEHHHHHHHHH---HCSCCCCCSEEEEETTTCC-SHH--HHHHHHHHH-HHHH------
T ss_pred ccccc------cCCCCceEEEEChHHHHHHhh---CcccccCCCEEEEeCCccC-Ccc--hHHHHHHHH-Hhhc------
Confidence 21111 112345799999998865443 2234678999999999988 322 233222221 1111
Q ss_pred ccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccc
Q 004098 325 KSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGE 404 (774)
Q Consensus 325 ~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 404 (774)
+++.++++||||++..+... + .. .+. ...+..... .. .
T Consensus 139 ---~~~~~~i~~SAT~~~~~~~~----~-~~-----------~~~-~~~~~~~~p-~~-~-------------------- 176 (451)
T 2jlq_A 139 ---MGEAAAIFMTATPPGSTDPF----P-QS-----------NSP-IEDIEREIP-ER-S-------------------- 176 (451)
T ss_dssp ---TTSCEEEEECSSCTTCCCSS----C-CC-----------SSC-EEEEECCCC-SS-C--------------------
T ss_pred ---CCCceEEEEccCCCccchhh----h-cC-----------CCc-eEecCccCC-ch-h--------------------
Confidence 22789999999997643210 0 00 011 011100000 00 0
Q ss_pred cccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCC
Q 004098 405 KEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDR 484 (774)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 484 (774)
|
T Consensus 177 ------------------------------------~------------------------------------------- 177 (451)
T 2jlq_A 177 ------------------------------------W------------------------------------------- 177 (451)
T ss_dssp ------------------------------------C-------------------------------------------
T ss_pred ------------------------------------h-------------------------------------------
Confidence 0
Q ss_pred CCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCce
Q 004098 485 DTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLE 564 (774)
Q Consensus 485 ~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~ 564 (774)
..++..+.+ ..+++||||++++.++.+++.|.+.|+.+..+|+++. +++++.|++|+.+
T Consensus 178 ---------------~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~ 236 (451)
T 2jlq_A 178 ---------------NTGFDWITD--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWD 236 (451)
T ss_dssp ---------------SSSCHHHHH--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCS
T ss_pred ---------------HHHHHHHHh--CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCce
Confidence 000011111 2458999999999999999999999999999999754 5789999999999
Q ss_pred EEEEecccccCcccCCcceEEEeC--------------------CCCCHHHHHHHhhccccCCC-cceEEEEee
Q 004098 565 VVVATIAFGMGIDKLNVRRIIHYG--------------------WPQSLEAYYQEAGRAGRDGH-LADCVLYAN 617 (774)
Q Consensus 565 vLVAT~a~~~GIDip~V~~VI~~d--------------------~p~s~~~y~Qr~GRaGR~G~-~g~~il~~~ 617 (774)
|||||+++++|||+|+ ++||||| .|.|.++|+||+|||||.|. +|.|++|+.
T Consensus 237 vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 237 FVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp EEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred EEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 9999999999999999 9999999 99999999999999999998 899988864
No 44
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.5e-37 Score=354.46 Aligned_cols=280 Identities=21% Similarity=0.211 Sum_probs=207.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHh-cCCcEEEEcCCCChHH
Q 004098 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSK-HGVTACFLGSGQPDNK 251 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~-~gi~~~~l~~~~~~~~ 251 (774)
.++++|.++++.+..++|++++||||+|||++|.+|++..+.++||++|||+|+.|+.+.+.+ ++..+....++..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~--- 293 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT--- 293 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE---
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe---
Confidence 466778777777778899999999999999999999999888999999999999999998876 5777766666543
Q ss_pred HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCC
Q 004098 252 VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331 (774)
Q Consensus 252 ~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~ 331 (774)
..+..+|+|+||++|. . ...+.+.++++|||||||++. .+ |...+..|... ++.. ...
T Consensus 294 -----~~~~~~IlV~TPGrLl---~--~~~l~l~~l~~lVlDEAH~l~-~~--~~~~l~~Il~~---l~~~------~~~ 351 (666)
T 3o8b_A 294 -----ITTGAPVTYSTYGKFL---A--DGGCSGGAYDIIICDECHSTD-ST--TILGIGTVLDQ---AETA------GAR 351 (666)
T ss_dssp -----ECCCCSEEEEEHHHHH---H--TTSCCTTSCSEEEETTTTCCS-HH--HHHHHHHHHHH---TTTT------TCS
T ss_pred -----ccCCCCEEEECcHHHH---h--CCCcccCcccEEEEccchhcC-cc--HHHHHHHHHHh---hhhc------CCc
Confidence 3467899999999873 2 333456779999999998764 23 66666665333 2210 022
Q ss_pred CEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCC
Q 004098 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIP 411 (774)
Q Consensus 332 ~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 411 (774)
.++++|||++..+ . ...+++. .+.......
T Consensus 352 llil~SAT~~~~i--------~-----------~~~p~i~-~v~~~~~~~------------------------------ 381 (666)
T 3o8b_A 352 LVVLATATPPGSV--------T-----------VPHPNIE-EVALSNTGE------------------------------ 381 (666)
T ss_dssp EEEEEESSCTTCC--------C-----------CCCTTEE-EEECBSCSS------------------------------
T ss_pred eEEEECCCCCccc--------c-----------cCCcceE-EEeecccch------------------------------
Confidence 3677899987621 0 1112211 111000000
Q ss_pred CcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchh
Q 004098 412 QDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFE 491 (774)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (774)
..++..
T Consensus 382 ---------------------------------------------i~~~~~----------------------------- 387 (666)
T 3o8b_A 382 ---------------------------------------------IPFYGK----------------------------- 387 (666)
T ss_dssp ---------------------------------------------EEETTE-----------------------------
T ss_pred ---------------------------------------------hHHHHh-----------------------------
Confidence 000000
Q ss_pred hccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc
Q 004098 492 RTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571 (774)
Q Consensus 492 ~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a 571 (774)
. + . .+....+++||||++++.++.+++.|++.++.+..+||+|++++ |.++..+|||||++
T Consensus 388 -------~---~-~-l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdV 448 (666)
T 3o8b_A 388 -------A---I-P-IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDA 448 (666)
T ss_dssp -------E---E-C-GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTT
T ss_pred -------h---h-h-hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECCh
Confidence 0 0 0 00114679999999999999999999999999999999999875 55666799999999
Q ss_pred cccCcccCCcceEE----------EeC-----------CCCCHHHHHHHhhccccCCCcceEEEEeeCCCCCc
Q 004098 572 FGMGIDKLNVRRII----------HYG-----------WPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMPT 623 (774)
Q Consensus 572 ~~~GIDip~V~~VI----------~~d-----------~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~~ 623 (774)
++||||+| |++|| ||| +|.+.++|+||+||||| |++|. ++|++..+.+.
T Consensus 449 aerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 449 LMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp HHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred HHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 99999997 99999 677 89999999999999999 99999 99988776653
No 45
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=9.7e-38 Score=363.56 Aligned_cols=275 Identities=15% Similarity=0.134 Sum_probs=195.2
Q ss_pred CCCHHHH-----HHHHHHH------cCCCEEEEecCCCchHHHHHHhhhc----cCCeEEEEccchHHHHHHHHHHHhcC
Q 004098 173 SLKNFQK-----EALSAWL------AHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSKHG 237 (774)
Q Consensus 173 ~~r~~Q~-----~ai~~il------~g~d~lv~apTGsGKTl~~~lpal~----~~~~~LVvsPt~~L~~qq~~~l~~~g 237 (774)
.|+++|. ++|+.++ +++|+|+++|||+|||++|++|++. .++++||++||++|+.|+++.+..++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC
Confidence 8999999 9999988 8999999999999999999999874 46799999999999999999998876
Q ss_pred CcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHH------HHHHHHHhcCccEEEEecccccccCCCCcHHHHHH
Q 004098 238 VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIK------PLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRR 311 (774)
Q Consensus 238 i~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~------~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~ 311 (774)
+. ...+... .++||+++..++. .+.....+.++++|||||||++ +..+...+..
T Consensus 295 i~---~~~~~l~--------------~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~---~~~~~~~~~~ 354 (673)
T 2wv9_A 295 VR---YLTPAVQ--------------REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFT---DPASIAARGY 354 (673)
T ss_dssp CE---ECCC-----------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCC---CHHHHHHHHH
T ss_pred ee---eeccccc--------------ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCccc---CccHHHHHHH
Confidence 54 1111000 1444444332111 1111124578999999999998 2112333333
Q ss_pred HHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHH
Q 004098 312 LSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQ 391 (774)
Q Consensus 312 l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~ 391 (774)
+..+ .+ +.+.++++||||+++.+.. +.. .+.++. .+......
T Consensus 355 l~~~---~~-------~~~~~vl~~SAT~~~~i~~-------~~~---------~~~~i~-~v~~~~~~----------- 396 (673)
T 2wv9_A 355 IATR---VE-------AGEAAAIFMTATPPGTSDP-------FPD---------TNSPVH-DVSSEIPD----------- 396 (673)
T ss_dssp HHHH---HH-------TTSCEEEEECSSCTTCCCS-------SCC---------CSSCEE-EEECCCCS-----------
T ss_pred HHHh---cc-------ccCCcEEEEcCCCChhhhh-------hcc---------cCCceE-EEeeecCH-----------
Confidence 3222 21 1278999999999754211 000 011111 00000000
Q ss_pred HHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccc
Q 004098 392 LIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVA 471 (774)
Q Consensus 392 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 471 (774)
T Consensus 397 -------------------------------------------------------------------------------- 396 (673)
T 2wv9_A 397 -------------------------------------------------------------------------------- 396 (673)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHH
Q 004098 472 CGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQL 551 (774)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R 551 (774)
.....++..+.+ ..+++||||++++.++.+++.|...++++..+|| ++|
T Consensus 397 -------------------------~~~~~~l~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR 445 (673)
T 2wv9_A 397 -------------------------RAWSSGFEWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSY 445 (673)
T ss_dssp -------------------------SCCSSCCHHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSH
T ss_pred -------------------------HHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHH
Confidence 000001111222 3568999999999999999999999999999999 379
Q ss_pred HHHHHHHhcCCceEEEEecccccCcccCCcceEEE--------------------eCCCCCHHHHHHHhhccccC-CCcc
Q 004098 552 RRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIH--------------------YGWPQSLEAYYQEAGRAGRD-GHLA 610 (774)
Q Consensus 552 ~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~--------------------~d~p~s~~~y~Qr~GRaGR~-G~~g 610 (774)
.+++++|++|+++|||||+++++|||+| +++||| |++|.+.++|+||+|||||. |+.|
T Consensus 446 ~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G 524 (673)
T 2wv9_A 446 DTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIG 524 (673)
T ss_dssp HHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCC
T ss_pred HHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCC
Confidence 9999999999999999999999999999 999998 67999999999999999999 7999
Q ss_pred eEEEEee
Q 004098 611 DCVLYAN 617 (774)
Q Consensus 611 ~~il~~~ 617 (774)
.|++|+.
T Consensus 525 ~ai~l~~ 531 (673)
T 2wv9_A 525 DEYHYGG 531 (673)
T ss_dssp EEEEECS
T ss_pred EEEEEEe
Confidence 9999974
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=3e-37 Score=345.34 Aligned_cols=262 Identities=16% Similarity=0.139 Sum_probs=182.4
Q ss_pred HHHcCCCEEEEecCCCchHHHHHHhhhc----cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcC
Q 004098 184 AWLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRG 259 (774)
Q Consensus 184 ~il~g~d~lv~apTGsGKTl~~~lpal~----~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~ 259 (774)
++++|+|+++++|||||||++|++|++. .++.+||++||++|+.|+++.+..+++. ......
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v~--~~~~~~------------ 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVK--FHTQAF------------ 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEE--EESSCC------------
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCeE--Eecccc------------
Confidence 3567999999999999999999999875 4679999999999999999999876543 211110
Q ss_pred CceEEEEChHHHHHHHHHHHHHH--------HhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCC
Q 004098 260 MYSIIYVCPETVIRLIKPLQRLA--------ESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331 (774)
Q Consensus 260 ~~~Ilv~TPe~l~~ll~~~~~~~--------~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~ 331 (774)
. .++||+++..++. .+.+ .+.++++|||||||++ +.+ |...+..+..+.. +.+.
T Consensus 70 --~-~v~Tp~~l~~~l~--~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~--~~~~~~~~~~~~~----------~~~~ 131 (440)
T 1yks_A 70 --S-AHGSGREVIDAMC--HATLTYRMLEPTRVVNWEVIIMDEAHFL-DPA--SIAARGWAAHRAR----------ANES 131 (440)
T ss_dssp --C-CCCCSSCCEEEEE--HHHHHHHHTSSSCCCCCSEEEETTTTCC-SHH--HHHHHHHHHHHHH----------TTSC
T ss_pred --e-eccCCccceeeec--ccchhHhhhCcccccCccEEEEECcccc-Ccc--hHHHHHHHHHHhc----------cCCc
Confidence 0 3777776654333 1111 2578999999999998 222 4444444433321 1278
Q ss_pred CEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCC
Q 004098 332 PLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIP 411 (774)
Q Consensus 332 ~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 411 (774)
++++||||+++.+.. +. ..+............
T Consensus 132 ~~l~~SAT~~~~~~~-------~~-----------~~~~~~~~~~~~~~~------------------------------ 163 (440)
T 1yks_A 132 ATILMTATPPGTSDE-------FP-----------HSNGEIEDVQTDIPS------------------------------ 163 (440)
T ss_dssp EEEEECSSCTTCCCS-------SC-----------CCSSCEEEEECCCCS------------------------------
T ss_pred eEEEEeCCCCchhhh-------hh-----------hcCCCeeEeeeccCh------------------------------
Confidence 999999999765321 10 000000000000000
Q ss_pred CcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchh
Q 004098 412 QDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFE 491 (774)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (774)
T Consensus 164 -------------------------------------------------------------------------------- 163 (440)
T 1yks_A 164 -------------------------------------------------------------------------------- 163 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc
Q 004098 492 RTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571 (774)
Q Consensus 492 ~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a 571 (774)
.....++..+.+ ..+++||||++++.++.+++.|...++++..+|| ++|.+++++|++|+++|||||++
T Consensus 164 -----~~~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v 232 (440)
T 1yks_A 164 -----EPWNTGHDWILA--DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDI 232 (440)
T ss_dssp -----SCCSSSCHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSS
T ss_pred -----HHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECCh
Confidence 000000111111 2568999999999999999999999999999999 46889999999999999999999
Q ss_pred cccCcccCCcceEEE-------------------eCCCCCHHHHHHHhhccccC-CCcceEEEEee
Q 004098 572 FGMGIDKLNVRRIIH-------------------YGWPQSLEAYYQEAGRAGRD-GHLADCVLYAN 617 (774)
Q Consensus 572 ~~~GIDip~V~~VI~-------------------~d~p~s~~~y~Qr~GRaGR~-G~~g~~il~~~ 617 (774)
+++|||+| |++||| |+.|.++++|+||+|||||. |++|.|++|++
T Consensus 233 ~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 233 AEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp TTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred hheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 99999999 999997 89999999999999999998 68999999974
No 47
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=8.8e-37 Score=353.43 Aligned_cols=282 Identities=14% Similarity=0.095 Sum_probs=207.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc----cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCC
Q 004098 171 HSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSG 246 (774)
Q Consensus 171 ~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~----~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~ 246 (774)
...++|+|..+++.+++|+|+|++||||||||++|++|++. .++++|||+||++|+.|+.+.+.... +. +...
T Consensus 169 ~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~~~--v~-~~~~ 245 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLP--IR-YQTP 245 (618)
T ss_dssp CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC--EE-ECCT
T ss_pred cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcCCc--ee-Eecc
Confidence 46788888888999999999999999999999999999884 46799999999999999999987443 22 2222
Q ss_pred CChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhccccccc
Q 004098 247 QPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKS 326 (774)
Q Consensus 247 ~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~ 326 (774)
... .....+..+.++|.+.+.+.+. ....+.++++|||||||++ +.+ |...+..+......
T Consensus 246 ~l~-----~~~tp~~~i~~~t~~~l~~~l~---~~~~l~~~~~iViDEah~~-~~~--~~~~~~~i~~~l~~-------- 306 (618)
T 2whx_A 246 AVK-----SDHTGREIVDLMCHATFTTRLL---SSTRVPNYNLIVMDEAHFT-DPC--SVAARGYISTRVEM-------- 306 (618)
T ss_dssp TSS-----CCCCSSSCEEEEEHHHHHHHHH---HCSSCCCCSEEEEESTTCC-SHH--HHHHHHHHHHHHHH--------
T ss_pred cce-----eccCCCceEEEEChHHHHHHHh---ccccccCCeEEEEECCCCC-Ccc--HHHHHHHHHHHhcc--------
Confidence 110 0112334677788887664322 1123688999999999998 333 66666665433211
Q ss_pred ccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCC-CCcEEEEeecCCccchhhhHhHHHHHHHHHhhhccccc
Q 004098 327 LKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFR-PNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEK 405 (774)
Q Consensus 327 l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r-~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 405 (774)
++.|+++||||++..+.. +.. ....+.+......
T Consensus 307 --~~~q~il~SAT~~~~~~~------------------~~~~~~~~~~v~~~~~~------------------------- 341 (618)
T 2whx_A 307 --GEAAAIFMTATPPGSTDP------------------FPQSNSPIEDIEREIPE------------------------- 341 (618)
T ss_dssp --TSCEEEEECSSCTTCCCS------------------SCCCSSCEEEEECCCCS-------------------------
T ss_pred --cCccEEEEECCCchhhhh------------------hhccCCceeeecccCCH-------------------------
Confidence 278999999999765321 001 0111111100000
Q ss_pred ccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCC
Q 004098 406 EKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRD 485 (774)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (774)
T Consensus 342 -------------------------------------------------------------------------------- 341 (618)
T 2whx_A 342 -------------------------------------------------------------------------------- 341 (618)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceE
Q 004098 486 TDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEV 565 (774)
Q Consensus 486 ~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~v 565 (774)
.+...++..|.+ ..+++||||+|++.++.+++.|.+.++.+..+||+ +|.+++++|++|+.+|
T Consensus 342 -----------~~~~~ll~~l~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~V 404 (618)
T 2whx_A 342 -----------RSWNTGFDWITD--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDF 404 (618)
T ss_dssp -----------SCCSSSCHHHHH--CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSE
T ss_pred -----------HHHHHHHHHHHh--CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEE
Confidence 000001111111 25689999999999999999999999999999984 7888999999999999
Q ss_pred EEEecccccCcccCCcceE--------------------EEeCCCCCHHHHHHHhhccccCCC-cceEEEEee
Q 004098 566 VVATIAFGMGIDKLNVRRI--------------------IHYGWPQSLEAYYQEAGRAGRDGH-LADCVLYAN 617 (774)
Q Consensus 566 LVAT~a~~~GIDip~V~~V--------------------I~~d~p~s~~~y~Qr~GRaGR~G~-~g~~il~~~ 617 (774)
||||+++++|||+| |++| |+|+.|.+.++|+||+|||||.|. +|.|++|++
T Consensus 405 LVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 405 VVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp EEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred EEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 99999999999997 9888 788889999999999999999975 999999986
No 48
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=4.7e-35 Score=347.24 Aligned_cols=325 Identities=15% Similarity=0.156 Sum_probs=223.9
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHc-CCCEEEEecCCCchHHHHHHhhhc------c--CCeEEEEccchH
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLA-HHDCLVLAATGSGKSLCFQIPALL------T--GKVVVVISPLIS 224 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~-g~d~lv~apTGsGKTl~~~lpal~------~--~~~~LVvsPt~~ 224 (774)
...+++.+.+.|+.. + ..|.+.|+++|+.++. ++++++++|||+|||+ ++|++. . ++.++|++|+++
T Consensus 76 ~~~l~~~~~~~l~~r-~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl~P~r~ 151 (773)
T 2xau_A 76 GREFTPKYVDILKIR-R-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACTQPRRV 151 (773)
T ss_dssp CSBCCHHHHHHHHHH-T-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEEESCHH
T ss_pred ccCCCHHHHHHHHHh-h-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEecCchHH
Confidence 345677888888855 4 5789999999998886 5689999999999999 455442 1 567999999999
Q ss_pred HHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccc-cccCC
Q 004098 225 LMHDQCSKLSK-HGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHC-VSKWG 302 (774)
Q Consensus 225 L~~qq~~~l~~-~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~-l~~~g 302 (774)
|+.|+.+.+.. +++.+....+..... ........+|+|+||+++.+.+.. ...+.++++|||||||. .++
T Consensus 152 La~q~~~~l~~~~~~~v~~~vG~~i~~---~~~~~~~~~I~v~T~G~l~r~l~~---~~~l~~~~~lIlDEah~R~ld-- 223 (773)
T 2xau_A 152 AAMSVAQRVAEEMDVKLGEEVGYSIRF---ENKTSNKTILKYMTDGMLLREAME---DHDLSRYSCIILDEAHERTLA-- 223 (773)
T ss_dssp HHHHHHHHHHHHTTCCBTTTEEEEETT---EEECCTTCSEEEEEHHHHHHHHHH---STTCTTEEEEEECSGGGCCHH--
T ss_pred HHHHHHHHHHHHhCCchhheecceecc---ccccCCCCCEEEECHHHHHHHHhh---CccccCCCEEEecCccccccc--
Confidence 99999988765 343321111110000 000124579999999998875542 23467899999999996 432
Q ss_pred CCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccc
Q 004098 303 HDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSR 382 (774)
Q Consensus 303 ~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~ 382 (774)
....+..+..+....+ +.+++++|||++.+ .+...++- .+.+..... ..++..... .....
T Consensus 224 --~d~~~~~l~~l~~~~~---------~~~iIl~SAT~~~~---~l~~~~~~--~~vi~v~gr-~~pv~~~~~--~~~~~ 284 (773)
T 2xau_A 224 --TDILMGLLKQVVKRRP---------DLKIIIMSATLDAE---KFQRYFND--APLLAVPGR-TYPVELYYT--PEFQR 284 (773)
T ss_dssp --HHHHHHHHHHHHHHCT---------TCEEEEEESCSCCH---HHHHHTTS--CCEEECCCC-CCCEEEECC--SSCCS
T ss_pred --hHHHHHHHHHHHHhCC---------CceEEEEeccccHH---HHHHHhcC--CCcccccCc-ccceEEEEe--cCCch
Confidence 1111223333333322 78999999999754 34445532 222221111 111111100 00000
Q ss_pred hhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhc
Q 004098 383 ASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLEN 462 (774)
Q Consensus 383 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (774)
.+.. ..
T Consensus 285 -~~~~---~~---------------------------------------------------------------------- 290 (773)
T 2xau_A 285 -DYLD---SA---------------------------------------------------------------------- 290 (773)
T ss_dssp -CHHH---HH----------------------------------------------------------------------
T ss_pred -hHHH---HH----------------------------------------------------------------------
Confidence 0000 00
Q ss_pred CCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHh--------
Q 004098 463 DSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCG-------- 534 (774)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~-------- 534 (774)
...++..+.. ...+++||||+++++++.+++.|.+
T Consensus 291 ------------------------------------l~~l~~~~~~-~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~ 333 (773)
T 2xau_A 291 ------------------------------------IRTVLQIHAT-EEAGDILLFLTGEDEIEDAVRKISLEGDQLVRE 333 (773)
T ss_dssp ------------------------------------HHHHHHHHHH-SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHh-cCCCCEEEECCCHHHHHHHHHHHHHHHHhhccc
Confidence 0001111111 1467999999999999999999985
Q ss_pred ---CCCceEEecCCCCHHHHHHHHHHHh-----cCCceEEEEecccccCcccCCcceEEEeCC-----------------
Q 004098 535 ---FGVKAAAYNASLPKSQLRRVHTEFH-----ENKLEVVVATIAFGMGIDKLNVRRIIHYGW----------------- 589 (774)
Q Consensus 535 ---~g~~~~~~h~~l~~~~R~~~~~~F~-----~g~~~vLVAT~a~~~GIDip~V~~VI~~d~----------------- 589 (774)
.++.+..+||+|++++|.++++.|. +|+.+|||||+++++|||+|+|++||++|+
T Consensus 334 ~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~ 413 (773)
T 2xau_A 334 EGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLV 413 (773)
T ss_dssp HCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEE
T ss_pred ccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCcccccc
Confidence 5889999999999999999999999 999999999999999999999999999888
Q ss_pred -CCCHHHHHHHhhccccCCCcceEEEEeeCCCC
Q 004098 590 -PQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (774)
Q Consensus 590 -p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~ 621 (774)
|.|..+|+||+|||||. .+|.|+.||+..+.
T Consensus 414 ~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 414 SPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred ccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 89999999999999999 89999999875544
No 49
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=5e-35 Score=356.11 Aligned_cols=396 Identities=13% Similarity=0.121 Sum_probs=237.9
Q ss_pred CCCHHHHHHHHHHHc--CCCEEEEecCCCchHHHHHHhhhc---c--CCeEEEEccchHHHHHHHHHHHh-cCCcEEEEc
Q 004098 173 SLKNFQKEALSAWLA--HHDCLVLAATGSGKSLCFQIPALL---T--GKVVVVISPLISLMHDQCSKLSK-HGVTACFLG 244 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~--g~d~lv~apTGsGKTl~~~lpal~---~--~~~~LVvsPt~~L~~qq~~~l~~-~gi~~~~l~ 244 (774)
+|+|||.+++.+++. +.++|++++||+|||++++..+.. . .+++|||+|+ +|+.||..++.+ +++++..+.
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~~ 231 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALFD 231 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEECC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEEc
Confidence 689999999999887 448999999999999998766642 2 3489999999 999999999954 788877665
Q ss_pred CCCChHHHHH-HHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccc
Q 004098 245 SGQPDNKVEQ-KALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANN 323 (774)
Q Consensus 245 ~~~~~~~~~~-~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~ 323 (774)
++........ .......+|+|+|++.+.+.... ...+...++++|||||||++..++......|..+..+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~-~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~----- 305 (968)
T 3dmq_A 232 DERYAEAQHDAYNPFDTEQLVICSLDFARRSKQR-LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEH----- 305 (968)
T ss_dssp HHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTT-THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTT-----
T ss_pred cchhhhhhhhcccccccCCEEEEcHHHHhhCHHH-HHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhc-----
Confidence 4321110000 01112469999999988642211 1234456899999999999987665555556666554321
Q ss_pred cccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHH---HHHHHhhh
Q 004098 324 LKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQL---IDIYTKKK 400 (774)
Q Consensus 324 ~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l---~~~~~~~~ 400 (774)
...+++|||||.++...+++..+.+.. |.... ....|....... .+......
T Consensus 306 ------~~~~L~LTATPi~n~~~el~sll~~L~-----------p~~~~--------~~~~f~~~~~~~~~i~~~~~~l~ 360 (968)
T 3dmq_A 306 ------VPGVLLLTATPEQLGMESHFARLRLLD-----------PNRFH--------DFAQFVEEQKNYCPVADAVAMLL 360 (968)
T ss_dssp ------CSSEEESCSSCSSSCSSCTHHHHHHHC-----------TTTCS--------STHHHHHHHHHHHHHHHHHHTTT
T ss_pred ------CCcEEEEEcCCccCCHHHHHHHHHhcC-----------ccccC--------CHHHHHHHHHhHHHHHHHHHHHh
Confidence 456999999997766665555554321 11100 001122221111 11111000
Q ss_pred ---cccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCccccc-----cc
Q 004098 401 ---KTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDV-----AC 472 (774)
Q Consensus 401 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~ 472 (774)
.........+...+.. .............. .............++..++...... ..
T Consensus 361 ~~~~~~~~~~~~L~~~l~~-------~~~~~l~~~~~~~~--------~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i 425 (968)
T 3dmq_A 361 AGNKLSNDELNMLGEMIGE-------QDIEPLLQAANSDS--------EDAQSARQELVSMLMDRHGTSRVLFRNTRNGV 425 (968)
T ss_dssp TSCCCCGGGTTSSTTTTCT-------TCSSTTGGGTCCCS--------SCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC
T ss_pred ccCCCCHHHHHHHHHHhcc-------hhhHHHHhcccchh--------hhhHHHHHHHHHHHHHhhCcchhhhhhhhhhh
Confidence 0000000000000000 00000000000000 0000000011111111110000000 00
Q ss_pred ccccCCC-------------------------------------CC--CCCCCccchhhccccCchhHhhhhccCCCCCC
Q 004098 473 GEFYGHS-------------------------------------PH--RDRDTDRSFERTDLLNKPAERLSMLQEPLEDG 513 (774)
Q Consensus 473 ~~~~~~~-------------------------------------~~--~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~ 513 (774)
..+.... +. ................|...+..++.. ..+.
T Consensus 426 ~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~ 504 (968)
T 3dmq_A 426 KGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQ 504 (968)
T ss_dssp CCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSS
T ss_pred cccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCC
Confidence 0000000 00 000000000112233455566666655 4677
Q ss_pred cEEEEeCchHHHHHHHHHHHh-CCCceEEecCCCCHHHHHHHHHHHhcCC--ceEEEEecccccCcccCCcceEEEeCCC
Q 004098 514 LTIIYVPTRKETLSIAKYLCG-FGVKAAAYNASLPKSQLRRVHTEFHENK--LEVVVATIAFGMGIDKLNVRRIIHYGWP 590 (774)
Q Consensus 514 ~~IIF~~sr~~~~~l~~~L~~-~g~~~~~~h~~l~~~~R~~~~~~F~~g~--~~vLVAT~a~~~GIDip~V~~VI~~d~p 590 (774)
++||||+++..++.++..|.. .|+++..+||+|++.+|.+++++|++|+ ++|||||+++++|||+|++++||+||+|
T Consensus 505 k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p 584 (968)
T 3dmq_A 505 KVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLP 584 (968)
T ss_dssp CCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCC
T ss_pred CEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCC
Confidence 999999999999999999995 5999999999999999999999999998 9999999999999999999999999999
Q ss_pred CCHHHHHHHhhccccCCCcceEEEEe
Q 004098 591 QSLEAYYQEAGRAGRDGHLADCVLYA 616 (774)
Q Consensus 591 ~s~~~y~Qr~GRaGR~G~~g~~il~~ 616 (774)
+++..|+|++||+||.|+.+.|++|+
T Consensus 585 ~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 585 FNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp SSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred CCHHHHHHHhhccccCCCCceEEEEE
Confidence 99999999999999999999877764
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.1e-35 Score=334.78 Aligned_cols=269 Identities=17% Similarity=0.170 Sum_probs=187.2
Q ss_pred HHHHHcCCCEEEEecCCCchHHHHHHhhhc----cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHH
Q 004098 182 LSAWLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL 257 (774)
Q Consensus 182 i~~il~g~d~lv~apTGsGKTl~~~lpal~----~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~ 257 (774)
...+.+++|+++++|||+|||++|++|++. .++++||++||++|+.|+.+.+... .+......... ..
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~~~~~~------~~ 86 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL--PVRYQTSAVQR------EH 86 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS--CEEECC-------------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc--eEeEEeccccc------CC
Confidence 334556899999999999999999999985 5789999999999999999999743 33222211110 01
Q ss_pred cCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccc-----ccCCCCcHHHHHHHHHHHHHhcccccccccCCCC
Q 004098 258 RGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV-----SKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIP 332 (774)
Q Consensus 258 ~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l-----~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~ 332 (774)
.....+.++|.+.+.+.+. ....+.++++|||||||++ ..+| | +..... +++.+
T Consensus 87 t~~~~i~~~~~~~l~~~l~---~~~~l~~~~~iViDEaH~~~~~~~~~~~--~---------~~~~~~-------~~~~~ 145 (459)
T 2z83_A 87 QGNEIVDVMCHATLTHRLM---SPNRVPNYNLFVMDEAHFTDPASIAARG--Y---------IATKVE-------LGEAA 145 (459)
T ss_dssp -CCCSEEEEEHHHHHHHHH---SCC-CCCCSEEEESSTTCCSHHHHHHHH--H---------HHHHHH-------TTSCE
T ss_pred CCCcEEEEEchHHHHHHhh---ccccccCCcEEEEECCccCCchhhHHHH--H---------HHHHhc-------cCCcc
Confidence 2344677888887654322 1234678999999999984 2222 1 111111 12789
Q ss_pred EEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCC
Q 004098 333 LMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQ 412 (774)
Q Consensus 333 il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 412 (774)
+++||||++..+.. +.. ...++.. +...... .
T Consensus 146 ~il~SAT~~~~~~~-----~~~-----------~~~pi~~-~~~~~~~-~------------------------------ 177 (459)
T 2z83_A 146 AIFMTATPPGTTDP-----FPD-----------SNAPIHD-LQDEIPD-R------------------------------ 177 (459)
T ss_dssp EEEECSSCTTCCCS-----SCC-----------CSSCEEE-EECCCCS-S------------------------------
T ss_pred EEEEEcCCCcchhh-----hcc-----------CCCCeEE-ecccCCc-c------------------------------
Confidence 99999999754211 000 0111111 0000000 0
Q ss_pred cCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhh
Q 004098 413 DLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFER 492 (774)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (774)
T Consensus 178 -------------------------------------------------------------------------------- 177 (459)
T 2z83_A 178 -------------------------------------------------------------------------------- 177 (459)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEeccc
Q 004098 493 TDLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF 572 (774)
Q Consensus 493 ~~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~ 572 (774)
....++..|.+ ..+++||||++++.++.+++.|...++.+..+|+. +|..++++|++|+.+|||||+++
T Consensus 178 -----~~~~~~~~l~~--~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~ 246 (459)
T 2z83_A 178 -----AWSSGYEWITE--YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDIS 246 (459)
T ss_dssp -----CCSSCCHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC
T ss_pred -----hhHHHHHHHHh--cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChH
Confidence 00000111111 25689999999999999999999999999999984 68889999999999999999999
Q ss_pred ccCcccCCcceEEE--------------------eCCCCCHHHHHHHhhccccCCC-cceEEEEeeCC
Q 004098 573 GMGIDKLNVRRIIH--------------------YGWPQSLEAYYQEAGRAGRDGH-LADCVLYANLS 619 (774)
Q Consensus 573 ~~GIDip~V~~VI~--------------------~d~p~s~~~y~Qr~GRaGR~G~-~g~~il~~~~~ 619 (774)
++|||+|+ ++||+ |+.|.|..+|+||+|||||.|. +|.|++|+...
T Consensus 247 ~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 247 EMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 99999999 99999 7799999999999999999997 99999998765
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.4e-34 Score=337.20 Aligned_cols=337 Identities=15% Similarity=0.174 Sum_probs=198.6
Q ss_pred CCCHHHHHHHHHHHc----C-CCEEEEecCCCchHHHHHHhhhc------------cCCeEEEEccchHHHHHHH-HHHH
Q 004098 173 SLKNFQKEALSAWLA----H-HDCLVLAATGSGKSLCFQIPALL------------TGKVVVVISPLISLMHDQC-SKLS 234 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~----g-~d~lv~apTGsGKTl~~~lpal~------------~~~~~LVvsPt~~L~~qq~-~~l~ 234 (774)
.|||+|.++++++++ + +++++++|||+|||++++..+.. ..+++|||+|+++|+.|+. +.+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999999886 4 56999999999999997655421 4589999999999999999 8888
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHH--HHHHHHhcCccEEEEecccccccCCCCcHHHHHHH
Q 004098 235 KHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKP--LQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312 (774)
Q Consensus 235 ~~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~--~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l 312 (774)
.++.....+.++. .....+|+|+||++|...... ....+....+++|||||||++...+ ...+..
T Consensus 258 ~~~~~~~~~~~~~---------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~---~~~~~~- 324 (590)
T 3h1t_A 258 PFGDARHKIEGGK---------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD---NSNWRE- 324 (590)
T ss_dssp TTCSSEEECCC-----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHH-
T ss_pred hcchhhhhhhccC---------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc---hHHHHH-
Confidence 8887766665432 234679999999998765431 0112234568999999999997542 122222
Q ss_pred HHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEE------EccCCCCCcEEEEeecCCccchhhh
Q 004098 313 SVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFV------LTSFFRPNLRFSVKHSKTSSRASYK 386 (774)
Q Consensus 313 ~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~------~~~~~r~~l~~~v~~~~~~~~~~~~ 386 (774)
+...++ ..++++|||||......+....++.. ...+ ...+..|...+.+........ +.
T Consensus 325 --il~~~~---------~~~~l~lTATP~~~~~~~~~~~f~~~--~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~--~~ 389 (590)
T 3h1t_A 325 --ILEYFE---------PAFQIGMTATPLREDNRDTYRYFGNP--IYTYSLRQGIDDGFLAPYRVHRVISEVDAAG--WR 389 (590)
T ss_dssp --HHHHST---------TSEEEEEESSCSCTTTHHHHHHSCSC--SEEECHHHHHHHTSSCCEEEEEEEETTCC------
T ss_pred --HHHhCC---------cceEEEeccccccccchhHHHHcCCc--eEecCHHHHhhCCccCCcEEEEeeeeeeccc--cc
Confidence 334443 57899999999876666666666432 1111 011222322222222111000 00
Q ss_pred HhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCc
Q 004098 387 KDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVD 466 (774)
Q Consensus 387 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 466 (774)
.. ....+... ..+ .+ ..|.. ..+ ...+
T Consensus 390 ~~-~~~~~~~~----------~~~-------~~-------------------~~~~~---------~~~-~~~~------ 416 (590)
T 3h1t_A 390 PS-KGDVDRFG----------REI-------PD-------------------GEYQT---------KDF-ERVI------ 416 (590)
T ss_dssp --------------------------------------------------------C---------CSH-HHHH------
T ss_pred cc-cccccccc----------ccc-------cc-------------------ccCCH---------HHh-hhHh------
Confidence 00 00000000 000 00 00000 000 0000
Q ss_pred ccccccccccCCCCCCCCCCccchhhccccCchh----HhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCc----
Q 004098 467 DWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPA----ERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVK---- 538 (774)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~----~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~---- 538 (774)
....+.. .+.+.+......+++||||++++.++.+++.|.+.+..
T Consensus 417 ---------------------------~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~ 469 (590)
T 3h1t_A 417 ---------------------------ALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRK 469 (590)
T ss_dssp ---------------------------HHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTT
T ss_pred ---------------------------cChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhcc
Confidence 0000111 12222222234579999999999999999999875433
Q ss_pred ----eEEecCCCCHHHHHHHHHHHhcCCce---EEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCC--c
Q 004098 539 ----AAAYNASLPKSQLRRVHTEFHENKLE---VVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGH--L 609 (774)
Q Consensus 539 ----~~~~h~~l~~~~R~~~~~~F~~g~~~---vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~--~ 609 (774)
+..+||.+++ +|++++++|++|+.+ |||||+++++|||+|+|++||+++.|+|+..|+||+||+||.|. .
T Consensus 470 ~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~ 548 (590)
T 3h1t_A 470 HPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYG 548 (590)
T ss_dssp CTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGT
T ss_pred CCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCC
Confidence 7788998764 799999999998766 88999999999999999999999999999999999999999885 4
Q ss_pred ceEEEEeeC
Q 004098 610 ADCVLYANL 618 (774)
Q Consensus 610 g~~il~~~~ 618 (774)
+...++++.
T Consensus 549 k~~~~I~D~ 557 (590)
T 3h1t_A 549 KLWFNIIDY 557 (590)
T ss_dssp BSCEEEEEC
T ss_pred CCEEEEEec
Confidence 444445553
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=3.1e-34 Score=320.30 Aligned_cols=267 Identities=15% Similarity=0.122 Sum_probs=184.9
Q ss_pred cCCCEEEEecCCCchHHHHHHhhh----ccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCce
Q 004098 187 AHHDCLVLAATGSGKSLCFQIPAL----LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYS 262 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~lpal----~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~ 262 (774)
+|+|+++++|||+|||++|++|++ ..++++||++||++|+.|+.+.+. ++.+..+.++... .......
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~~~~------~~~~~~~ 72 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR--GEPIRYMTPAVQS------ERTGNEI 72 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEEC---------------CCCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC--CCeEEEEecCccc------cCCCCce
Confidence 478999999999999999998887 357799999999999999998887 4555544433211 1223446
Q ss_pred EEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCH
Q 004098 263 IIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATI 342 (774)
Q Consensus 263 Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~ 342 (774)
+.++|.+.+.+.+. ....+.++++|||||||++..+ +......+..+.. ++++++++||||+++
T Consensus 73 ~~~~~~~~l~~~l~---~~~~~~~l~~vViDEaH~~~~~---~~~~~~~l~~~~~----------~~~~~~l~~SAT~~~ 136 (431)
T 2v6i_A 73 VDFMCHSTFTMKLL---QGVRVPNYNLYIMDEAHFLDPA---SVAARGYIETRVS----------MGDAGAIFMTATPPG 136 (431)
T ss_dssp EEEEEHHHHHHHHH---HTCCCCCCSEEEEESTTCCSHH---HHHHHHHHHHHHH----------TTSCEEEEEESSCTT
T ss_pred EEEEchHHHHHHHh---cCccccCCCEEEEeCCccCCcc---HHHHHHHHHHHhh----------CCCCcEEEEeCCCCc
Confidence 77788887754322 2233678999999999997321 3333333333221 227899999999986
Q ss_pred HHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccC
Q 004098 343 QVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSS 422 (774)
Q Consensus 343 ~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (774)
.+. .+.. .++++. .+......
T Consensus 137 ~~~-------~~~~---------~~~~i~-~~~~~~~~------------------------------------------ 157 (431)
T 2v6i_A 137 TTE-------AFPP---------SNSPII-DEETRIPD------------------------------------------ 157 (431)
T ss_dssp CCC-------SSCC---------CSSCCE-EEECCCCS------------------------------------------
T ss_pred chh-------hhcC---------CCCcee-eccccCCH------------------------------------------
Confidence 321 0100 011111 00000000
Q ss_pred CCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHh
Q 004098 423 SSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAER 502 (774)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 502 (774)
.+...+
T Consensus 158 --------------------------------------------------------------------------~~~~~~ 163 (431)
T 2v6i_A 158 --------------------------------------------------------------------------KAWNSG 163 (431)
T ss_dssp --------------------------------------------------------------------------SCCSSC
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 000001
Q ss_pred hhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcc
Q 004098 503 LSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVR 582 (774)
Q Consensus 503 l~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~ 582 (774)
+..+.+ ..+++||||++++.++.+++.|++.++++..+||+ +|.+++++|++|+++|||||+++++|||+| +.
T Consensus 164 ~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~ 236 (431)
T 2v6i_A 164 YEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-AD 236 (431)
T ss_dssp CHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CS
T ss_pred HHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-Cc
Confidence 111222 25689999999999999999999999999999997 578899999999999999999999999999 54
Q ss_pred e-----------------EEEeCCCCCHHHHHHHhhccccCCCcceEEEEee
Q 004098 583 R-----------------IIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYAN 617 (774)
Q Consensus 583 ~-----------------VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~ 617 (774)
+ ||+++.|.+..+|+||+||+||.|..+.|++++.
T Consensus 237 ~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 237 RVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred EEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 4 6889999999999999999999996554544443
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3.1e-34 Score=332.98 Aligned_cols=281 Identities=20% Similarity=0.201 Sum_probs=203.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHH
Q 004098 177 FQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKA 256 (774)
Q Consensus 177 ~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~ 256 (774)
.|.......++|++++++||||+|||+ +++..+...+..+|++||++|+.|+++.+.+.|+++..++++..... .-
T Consensus 144 ~~~~p~ar~l~rk~vlv~apTGSGKT~-~al~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~iv---~T 219 (677)
T 3rc3_A 144 PNWYPDARAMQRKIIFHSGPTNSGKTY-HAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTV---QP 219 (677)
T ss_dssp GGGCHHHHTSCCEEEEEECCTTSSHHH-HHHHHHHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEECC---ST
T ss_pred hhhCHHHHhcCCCEEEEEcCCCCCHHH-HHHHHHHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeEEe---cC
Confidence 344444556789999999999999999 44555555567799999999999999999999999998888754310 00
Q ss_pred HcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEE
Q 004098 257 LRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMAL 336 (774)
Q Consensus 257 ~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~l 336 (774)
.....+++++|+|.+. ....+++|||||||++.+.+ |...+..+.. .++ ....+++++
T Consensus 220 pGr~~~il~~T~e~~~----------l~~~v~lvVIDEaH~l~d~~--~g~~~~~~l~---~l~-------~~~i~il~~ 277 (677)
T 3rc3_A 220 NGKQASHVSCTVEMCS----------VTTPYEVAVIDEIQMIRDPA--RGWAWTRALL---GLC-------AEEVHLCGE 277 (677)
T ss_dssp TCCCCSEEEEEGGGCC----------SSSCEEEEEECSGGGGGCTT--THHHHHHHHH---HCC-------EEEEEEEEC
T ss_pred CCcccceeEecHhHhh----------hcccCCEEEEecceecCCcc--chHHHHHHHH---ccC-------ccceEEEec
Confidence 0113678999988553 13568999999999998766 6666654421 111 126788888
Q ss_pred eccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCC
Q 004098 337 TATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDD 416 (774)
Q Consensus 337 TAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 416 (774)
|||. .....+....+.. ..+ ..+.+..- ..+..
T Consensus 278 SAT~--~~i~~l~~~~~~~---~~v-~~~~r~~~-l~~~~---------------------------------------- 310 (677)
T 3rc3_A 278 PAAI--DLVMELMYTTGEE---VEV-RDYKRLTP-ISVLD---------------------------------------- 310 (677)
T ss_dssp GGGH--HHHHHHHHHHTCC---EEE-EECCCSSC-EEECS----------------------------------------
T ss_pred cchH--HHHHHHHHhcCCc---eEE-EEeeecch-HHHHH----------------------------------------
Confidence 8883 4444455444311 111 11111100 00000
Q ss_pred ccCccCCCcccccccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhcccc
Q 004098 417 QSDTSSSSSMSEESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLL 496 (774)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (774)
.
T Consensus 311 ----------------------------------------------~--------------------------------- 311 (677)
T 3rc3_A 311 ----------------------------------------------H--------------------------------- 311 (677)
T ss_dssp ----------------------------------------------S---------------------------------
T ss_pred ----------------------------------------------H---------------------------------
Confidence 0
Q ss_pred CchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc--CCceEEEEeccccc
Q 004098 497 NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHE--NKLEVVVATIAFGM 574 (774)
Q Consensus 497 ~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~--g~~~vLVAT~a~~~ 574 (774)
.+..+.. .....||||++++.++.+++.|.+.++.+..+||+|++++|.++++.|++ |+.+|||||+++++
T Consensus 312 -----~l~~l~~--~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~ 384 (677)
T 3rc3_A 312 -----ALESLDN--LRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGM 384 (677)
T ss_dssp -----CCCSGGG--CCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGS
T ss_pred -----HHHHHHh--cCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHC
Confidence 0000000 12345899999999999999999999999999999999999999999999 89999999999999
Q ss_pred CcccCCcceEEEeCC--------------CCCHHHHHHHhhccccCCCc---ceEEEEee
Q 004098 575 GIDKLNVRRIIHYGW--------------PQSLEAYYQEAGRAGRDGHL---ADCVLYAN 617 (774)
Q Consensus 575 GIDip~V~~VI~~d~--------------p~s~~~y~Qr~GRaGR~G~~---g~~il~~~ 617 (774)
|||+ +|++||++|+ |.|..+|+||+|||||.|.. |.|++++.
T Consensus 385 GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 385 GLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp SCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred CcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 9999 8999999999 78999999999999999964 77776654
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4.3e-33 Score=318.31 Aligned_cols=355 Identities=15% Similarity=0.123 Sum_probs=219.1
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEecCCCchHHHHHHhhhc-----cCCeEEEEccchHHHHHHHHHHHhc--CCcEE
Q 004098 173 SLKNFQKEALSAWL----AHHDCLVLAATGSGKSLCFQIPALL-----TGKVVVVISPLISLMHDQCSKLSKH--GVTAC 241 (774)
Q Consensus 173 ~~r~~Q~~ai~~il----~g~d~lv~apTGsGKTl~~~lpal~-----~~~~~LVvsPt~~L~~qq~~~l~~~--gi~~~ 241 (774)
.|+|||.+++++++ .++++|++++||+|||++++..+.. ..+++|||+| .+|+.||.+++.++ +.++.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v~ 115 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRFA 115 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCEE
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceEE
Confidence 69999999998874 4789999999999999987554432 2468999999 57999999999997 35565
Q ss_pred EEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcc
Q 004098 242 FLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGA 321 (774)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~ 321 (774)
.+.++... .....++|+|+||+++.+... +....+++|||||||++...+.. .+..+ ..+.
T Consensus 116 ~~~g~~~~------~~~~~~~ivi~t~~~l~~~~~-----l~~~~~~~vIvDEaH~~kn~~~~---~~~~l----~~l~- 176 (500)
T 1z63_A 116 VFHEDRSK------IKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQTK---IFKAV----KELK- 176 (500)
T ss_dssp ECSSSTTS------CCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTTSH---HHHHH----HTSC-
T ss_pred EEecCchh------ccccCCcEEEeeHHHHhccch-----hcCCCcCEEEEeCccccCCHhHH---HHHHH----Hhhc-
Confidence 55554422 112357999999999875432 34567999999999999765421 22222 1222
Q ss_pred cccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCC---------------------------------ceEEEcc----
Q 004098 322 NNLKSLKFDIPLMALTATATIQVREDILKSLHMSKG---------------------------------TKFVLTS---- 364 (774)
Q Consensus 322 ~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~---------------------------------~~~~~~~---- 364 (774)
...+++|||||..+...+++..+.+..+ +.++...
T Consensus 177 --------~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~ 248 (500)
T 1z63_A 177 --------SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDK 248 (500)
T ss_dssp --------EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCH
T ss_pred --------cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeeccccc
Confidence 3568999999988766666554432111 1111110
Q ss_pred ---CCCCCcEEEEeecCCccchhhhHhHHHHHHHHHhhhcccccccccCCCcCCCccCccCCCc-ccccccCCCCCCCCC
Q 004098 365 ---FFRPNLRFSVKHSKTSSRASYKKDFCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSS-MSEESRISPNIGDGY 440 (774)
Q Consensus 365 ---~~r~~l~~~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 440 (774)
..-|+....+........ -......+............. ......... +..-...+
T Consensus 249 ~~~~~lp~~~~~~v~~~l~~~--~~~~y~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~lr~~~------- 308 (500)
T 1z63_A 249 AIINDLPDKIETNVYCNLTPE--QAAMYKAEVENLFNNIDSVTG-----------IKRKGMILSTLLKLKQIV------- 308 (500)
T ss_dssp HHHTTSCSEEEEEEEECCCHH--HHHHHHHHHHHHTTTTTTCCT-----------HHHHHHHHHHHHHHHHHT-------
T ss_pred chhhcCCCCeEEEEEcCCCHH--HHHHHHHHHHHHHHHHHhhhc-----------ccchHHHHHHHHHHHHHh-------
Confidence 011222222211111100 000111111111000000000 000000000 00000000
Q ss_pred CCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCC-CCCcEEEEe
Q 004098 441 YDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPL-EDGLTIIYV 519 (774)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~-~~~~~IIF~ 519 (774)
....+.... ........|...+.++|.+.. .+.++||||
T Consensus 309 ---------------~~p~l~~~~-------------------------~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~ 348 (500)
T 1z63_A 309 ---------------DHPALLKGG-------------------------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFT 348 (500)
T ss_dssp ---------------TCTHHHHCS-------------------------CCCSTTCHHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred ---------------CCHHHhcCc-------------------------cchhhcchhHHHHHHHHHHHHccCCcEEEEE
Confidence 000000000 000112234444455554432 456999999
Q ss_pred CchHHHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHhcC-Cce-EEEEecccccCcccCCcceEEEeCCCCCHHHH
Q 004098 520 PTRKETLSIAKYLCGF-GVKAAAYNASLPKSQLRRVHTEFHEN-KLE-VVVATIAFGMGIDKLNVRRIIHYGWPQSLEAY 596 (774)
Q Consensus 520 ~sr~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~F~~g-~~~-vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y 596 (774)
+++..++.+++.|... |+.+..+||++++++|.+++++|++| ..+ +||+|+++++|||++.+++||+||+|+|+..|
T Consensus 349 ~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~ 428 (500)
T 1z63_A 349 QFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVE 428 (500)
T ss_dssp SCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---
T ss_pred ehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchH
Confidence 9999999999999885 99999999999999999999999988 555 89999999999999999999999999999999
Q ss_pred HHHhhccccCCCcceEEEE
Q 004098 597 YQEAGRAGRDGHLADCVLY 615 (774)
Q Consensus 597 ~Qr~GRaGR~G~~g~~il~ 615 (774)
.|++||++|.|+...+.+|
T Consensus 429 ~Q~~gR~~R~Gq~~~v~v~ 447 (500)
T 1z63_A 429 DQATDRVYRIGQTRNVIVH 447 (500)
T ss_dssp CHHHHTTTTTTTTSCEEEE
T ss_pred HHHHHHHHHcCCCCeeEEE
Confidence 9999999999998887554
No 55
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.8e-33 Score=333.14 Aligned_cols=405 Identities=15% Similarity=0.181 Sum_probs=238.4
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEecCCCchHHHHHHhhh------ccCCeEEEEccchHHHHHHHHHHHhc--CCc
Q 004098 172 SSLKNFQKEALSAWL----AHHDCLVLAATGSGKSLCFQIPAL------LTGKVVVVISPLISLMHDQCSKLSKH--GVT 239 (774)
Q Consensus 172 ~~~r~~Q~~ai~~il----~g~d~lv~apTGsGKTl~~~lpal------~~~~~~LVvsPt~~L~~qq~~~l~~~--gi~ 239 (774)
..+||||.+++.+++ .++++|++++||+|||+.++..+. ...+.+|||+| .+|+.||.+++.++ ++.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 379999999999887 689999999999999997655443 23678999999 79999999999997 456
Q ss_pred EEEEcCCCChHHHHHH-----------HHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHH
Q 004098 240 ACFLGSGQPDNKVEQK-----------ALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPD 308 (774)
Q Consensus 240 ~~~l~~~~~~~~~~~~-----------~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~ 308 (774)
+..++++......... .....++|+|+|++++..... .+....|++|||||||++...+.. .
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~----~l~~~~w~~vIvDEaH~lkn~~s~---~ 386 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA----ELGSIKWQFMAVDEAHRLKNAESS---L 386 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH----HHHTSEEEEEEETTGGGGCCSSSH---H
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH----HHhcCCcceeehhhhhhhcCchhH---H
Confidence 6655554433222221 123457899999999876433 233457999999999999764421 2
Q ss_pred HHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCCCcEEEEeecCCccchhhhHh
Q 004098 309 YRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRPNLRFSVKHSKTSSRASYKKD 388 (774)
Q Consensus 309 ~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~~~~~~ 388 (774)
+..+ ..+. ....++|||||.++...+++..|.+..+..+... -.+.... ...........
T Consensus 387 ~~~l----~~l~---------~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~------~~~~~~~-~~~~~~~~~~~ 446 (800)
T 3mwy_W 387 YESL----NSFK---------VANRMLITGTPLQNNIKELAALVNFLMPGRFTID------QEIDFEN-QDEEQEEYIHD 446 (800)
T ss_dssp HHHH----TTSE---------EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------------C-CTTHHHHHHHH
T ss_pred HHHH----HHhh---------hccEEEeeCCcCCCCHHHHHHHHHHhCccccCch------hhhcccc-cchhHHHHHHH
Confidence 2222 2222 3457999999988888888887765422211100 0001100 00001111222
Q ss_pred HHHHHHHHHhhhcccccccccCCCcCCCccCccCCCcccc-cccCCCCCCCCCCCCccCCCCCCccchhhhhhhcCCCcc
Q 004098 389 FCQLIDIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSE-ESRISPNIGDGYYDDEDVGNSPMGKEMSVEFLENDSVDD 467 (774)
Q Consensus 389 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (774)
+..++..+..++........ +++..... ....++. ....+..+....+.....+....... ....+ ..
T Consensus 447 L~~~l~p~~lRR~k~dv~~~-LP~k~~~~----v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~-~l~~l-----~~ 515 (800)
T 3mwy_W 447 LHRRIQPFILRRLKKDVEKS-LPSKTERI----LRVELSDVQTEYYKNILTKNYSALTAGAKGGHFS-LLNIM-----NE 515 (800)
T ss_dssp HHHTTGGGEEECCGGGGTTT-SCCEEEEE----EEECCCHHHHHHHHHHHHHCCC----------CT-HHHHH-----HH
T ss_pred HHHHHhHHHhhhhHHhhhhc-cCCcEEEE----EEeCCCHHHHHHHHHHHHHHHHHHhhccccchhh-HHHHH-----HH
Confidence 22222222111111111000 00000000 0000000 00000000000000000000000000 00000 11
Q ss_pred cccccccccCCCCCCC--------C--CCcc-chhhccccCchhHhhhhccCCC-CCCcEEEEeCchHHHHHHHHHHHhC
Q 004098 468 WDVACGEFYGHSPHRD--------R--DTDR-SFERTDLLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGF 535 (774)
Q Consensus 468 ~~~~~~~~~~~~~~~~--------~--~~~~-~~~~~~~~~k~~~ll~~L~~~~-~~~~~IIF~~sr~~~~~l~~~L~~~ 535 (774)
....|.+.+....... . .... .......+.|...+..+|.+.. .+.++||||+.+..++.|..+|...
T Consensus 516 Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~ 595 (800)
T 3mwy_W 516 LKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK 595 (800)
T ss_dssp HHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhC
Confidence 2223333322111000 0 0000 0111223455555666665543 3459999999999999999999999
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCc---eEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceE
Q 004098 536 GVKAAAYNASLPKSQLRRVHTEFHENKL---EVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADC 612 (774)
Q Consensus 536 g~~~~~~h~~l~~~~R~~~~~~F~~g~~---~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~ 612 (774)
|+.+..+||+++.++|.+++++|+++.. .+|++|.+++.|||++.+++||+||+|||+..+.|++||++|.|+...+
T Consensus 596 g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V 675 (800)
T 3mwy_W 596 GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHV 675 (800)
T ss_dssp TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceE
Confidence 9999999999999999999999998654 5999999999999999999999999999999999999999999998877
Q ss_pred EEE
Q 004098 613 VLY 615 (774)
Q Consensus 613 il~ 615 (774)
.+|
T Consensus 676 ~Vy 678 (800)
T 3mwy_W 676 MVY 678 (800)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 56
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.6e-30 Score=304.52 Aligned_cols=105 Identities=12% Similarity=0.172 Sum_probs=99.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCc---eEEEEecccccCcccCCcceEEEe
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKL---EVVVATIAFGMGIDKLNVRRIIHY 587 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~---~vLVAT~a~~~GIDip~V~~VI~~ 587 (774)
.+.++||||+++..++.++..|...|+.+..+||+++.++|.+++++|++|+. .+||+|.++++|||++.+++||+|
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~ 494 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMF 494 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEEC
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEE
Confidence 46799999999999999999999999999999999999999999999999865 489999999999999999999999
Q ss_pred CCCCCHHHHHHHhhccccCCCcceEEEE
Q 004098 588 GWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (774)
Q Consensus 588 d~p~s~~~y~Qr~GRaGR~G~~g~~il~ 615 (774)
|+|||+..|.|++||++|.|+...+.+|
T Consensus 495 d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~ 522 (644)
T 1z3i_X 495 DPDWNPANDEQAMARVWRDGQKKTCYIY 522 (644)
T ss_dssp SCCSSHHHHHHHHTTSSSTTCCSCEEEE
T ss_pred CCCCCccHHHHHHHhhhhcCCCCceEEE
Confidence 9999999999999999999998877665
No 57
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=1.7e-28 Score=276.38 Aligned_cols=122 Identities=19% Similarity=0.195 Sum_probs=104.9
Q ss_pred CchhHhhhhccCCC-CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccC
Q 004098 497 NKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575 (774)
Q Consensus 497 ~k~~~ll~~L~~~~-~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~G 575 (774)
.|...++..+.+.. .+.|+||||+|++.++.|++.|.+.|+++..+||+..+.++..+.+.|+.| .|+|||+++|||
T Consensus 458 eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRG 535 (822)
T 3jux_A 458 EKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRG 535 (822)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTT
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCC
Confidence 34555555555432 456999999999999999999999999999999996666666666677766 699999999999
Q ss_pred cccC--------CcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 576 IDKL--------NVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 576 IDip--------~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
+||+ ++.+||+|++|.|...|+||+|||||.|.+|.+++|++..|
T Consensus 536 tDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 536 TDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp CCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred cCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 9997 55699999999999999999999999999999999998876
No 58
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.96 E-value=4e-29 Score=257.37 Aligned_cols=183 Identities=19% Similarity=0.307 Sum_probs=156.5
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc-----------cCCeEEEEccc
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-----------TGKVVVVISPL 222 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~-----------~~~~~LVvsPt 222 (774)
...+++.+.+.|+ .+||..|+|+|.++|+.+++|+|++++||||+|||++|++|++. .++++|||+||
T Consensus 33 ~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt 111 (242)
T 3fe2_A 33 EANFPANVMDVIA-RQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPT 111 (242)
T ss_dssp TTTCCHHHHHHHH-TTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSS
T ss_pred hcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCc
Confidence 4568889999998 57999999999999999999999999999999999999999984 36789999999
Q ss_pred hHHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 004098 223 ISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (774)
Q Consensus 223 ~~L~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l 298 (774)
++|+.|+.+.+.++ ++.+..++++.........+ ..+++|+|+||++|.+++. .....+.++++|||||||++
T Consensus 112 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~I~v~Tp~~l~~~l~--~~~~~~~~~~~lViDEah~l 188 (242)
T 3fe2_A 112 RELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL-ERGVEICIATPGRLIDFLE--CGKTNLRRTTYLVLDEADRM 188 (242)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH-HHCCSEEEECHHHHHHHHH--HTSCCCTTCCEEEETTHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHh-cCCCCEEEECHHHHHHHHH--cCCCCcccccEEEEeCHHHH
Confidence 99999999988875 78899998888765544443 3458999999999988776 44445678999999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcC
Q 004098 299 SKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (774)
Q Consensus 299 ~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~ 353 (774)
.+|| |++.+..+ +..++++.|+++||||+++.+.+.+...+.
T Consensus 189 ~~~~--~~~~~~~i-----------~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~ 230 (242)
T 3fe2_A 189 LDMG--FEPQIRKI-----------VDQIRPDRQTLMWSATWPKEVRQLAEDFLK 230 (242)
T ss_dssp HHTT--CHHHHHHH-----------HTTSCSSCEEEEEESCCCHHHHHHHHHHCS
T ss_pred hhhC--cHHHHHHH-----------HHhCCccceEEEEEeecCHHHHHHHHHHCC
Confidence 9999 99999887 334455889999999999999888777774
No 59
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.96 E-value=5e-29 Score=254.19 Aligned_cols=182 Identities=23% Similarity=0.279 Sum_probs=148.3
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc------------cCCeEEEEccc
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------------TGKVVVVISPL 222 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~------------~~~~~LVvsPt 222 (774)
+.+.+.+.+.|. .+||..|+|+|.++++.+++|+|+++++|||+|||++|++|++. .++++|||+||
T Consensus 25 ~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt 103 (228)
T 3iuy_A 25 FQQYPDLLKSII-RVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPT 103 (228)
T ss_dssp HTTCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSS
T ss_pred hccCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCC
Confidence 456678888998 46999999999999999999999999999999999999999875 56789999999
Q ss_pred hHHHHHHHHHHHhc---CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 223 ISLMHDQCSKLSKH---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 223 ~~L~~qq~~~l~~~---gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
++|+.|+.+.+.++ ++.+..+.++........ ....+++|+|+||+++.+++. .....+.++++|||||||++.
T Consensus 104 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~Tp~~l~~~~~--~~~~~~~~~~~lViDEah~~~ 180 (228)
T 3iuy_A 104 RELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE-DISKGVDIIIATPGRLNDLQM--NNSVNLRSITYLVIDEADKML 180 (228)
T ss_dssp HHHHHHHHHHHHHHCCTTCCEEEECC------CHH-HHHSCCSEEEECHHHHHHHHH--TTCCCCTTCCEEEECCHHHHH
T ss_pred HHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH-HhcCCCCEEEECHHHHHHHHH--cCCcCcccceEEEEECHHHHh
Confidence 99999999999986 678888888766543333 334568999999999987665 344456789999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcC
Q 004098 300 KWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (774)
Q Consensus 300 ~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~ 353 (774)
+|| |++.+..+.. .++++.|++++|||+++.+.+.+...+.
T Consensus 181 ~~~--~~~~~~~i~~-----------~~~~~~~~l~~SAT~~~~~~~~~~~~l~ 221 (228)
T 3iuy_A 181 DME--FEPQIRKILL-----------DVRPDRQTVMTSATWPDTVRQLALSYLK 221 (228)
T ss_dssp HTT--CHHHHHHHHH-----------HSCSSCEEEEEESCCCHHHHHHHHTTCS
T ss_pred ccc--hHHHHHHHHH-----------hCCcCCeEEEEEeeCCHHHHHHHHHHCC
Confidence 998 8999888732 2334789999999999998887766664
No 60
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.96 E-value=3.5e-28 Score=293.58 Aligned_cols=348 Identities=12% Similarity=0.125 Sum_probs=210.2
Q ss_pred HHHHHHHHHhcC------CCCCCHHHHHHHHHHHc--------------CCCEEEEecCCCchHHHHHHhhhc------c
Q 004098 159 VKVNSLLKKHFG------HSSLKNFQKEALSAWLA--------------HHDCLVLAATGSGKSLCFQIPALL------T 212 (774)
Q Consensus 159 ~~l~~~L~~~~g------~~~~r~~Q~~ai~~il~--------------g~d~lv~apTGsGKTl~~~lpal~------~ 212 (774)
..+...+.++.- ...|||+|.+|++.++. +++++++++||||||+++ ++++. .
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~ 329 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDF 329 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTT
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCC
Confidence 445566664321 22599999999999886 378999999999999997 33321 1
Q ss_pred CCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEE
Q 004098 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAI 292 (774)
Q Consensus 213 ~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVI 292 (774)
..++|||+|+++|+.|+.+.+.+++... +.++.........+.....+|+|+||++|..++........+..+.+|||
T Consensus 330 ~~rvLvlvpr~eL~~Q~~~~f~~f~~~~--v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIi 407 (1038)
T 2w00_A 330 IDKVFFVVDRKDLDYQTMKEYQRFSPDS--VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIF 407 (1038)
T ss_dssp CCEEEEEECGGGCCHHHHHHHHTTSTTC--SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEE
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhcccc--cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEE
Confidence 3599999999999999999999976431 22333333333334346689999999999876552111123457899999
Q ss_pred ecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHH----HHHHHHcCCCCCceEEEc-----
Q 004098 293 DEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVR----EDILKSLHMSKGTKFVLT----- 363 (774)
Q Consensus 293 DEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~----~~i~~~L~~~~~~~~~~~----- 363 (774)
||||++.. ...+.. ++..++ +.++++|||||..... ......++- .+..-
T Consensus 408 DEAHrs~~-----~~~~~~---I~~~~p---------~a~~lgfTATP~~~~~~~~~~~t~~~FG~----~i~~Y~l~~A 466 (1038)
T 2w00_A 408 DECHRSQF-----GEAQKN---LKKKFK---------RYYQFGFTGTPIFPENALGSETTASVFGR----ELHSYVITDA 466 (1038)
T ss_dssp ESCCTTHH-----HHHHHH---HHHHCS---------SEEEEEEESSCCCSTTCTTSCCHHHHHCS----EEEEECHHHH
T ss_pred Eccchhcc-----hHHHHH---HHHhCC---------cccEEEEeCCccccccchhhhHHHHHhCC----eeEeecHHHH
Confidence 99999752 222333 345554 6789999999975321 112222221 11110
Q ss_pred ---cCCCCCcEEEEeecCCccchhhhHhHHHHH-----HHHHhhhcccccccccCCCcCCCccCccCCCcccccccCCCC
Q 004098 364 ---SFFRPNLRFSVKHSKTSSRASYKKDFCQLI-----DIYTKKKKTGEKEKSAIPQDLDDQSDTSSSSSMSEESRISPN 435 (774)
Q Consensus 364 ---~~~r~~l~~~v~~~~~~~~~~~~~~l~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (774)
.+..| +.+....... . +..+. ..+... . ...++
T Consensus 467 I~dg~l~p-~~v~y~~v~~----~----~~~~~~e~d~~~~~~i----~-~~~~l------------------------- 507 (1038)
T 2w00_A 467 IRDEKVLK-FKVDYNDVRP----Q----FKSLETETDEKKLSAA----E-NQQAF------------------------- 507 (1038)
T ss_dssp HHHTSSCC-EEEEECCCCG----G----GHHHHTCCCHHHHHHT----C-STTTT-------------------------
T ss_pred HhCCCcCC-eEEEEEeccc----h----hhhccccccHHHHHHH----H-HHHHh-------------------------
Confidence 11111 1111110000 0 00000 000000 0 00000
Q ss_pred CCCCCCCCccCCCCCCccchhhhhhhcCCCcccccccccccCCCCCCCCCCccchhhccccCchhHhhhhccCCCCCCcE
Q 004098 436 IGDGYYDDEDVGNSPMGKEMSVEFLENDSVDDWDVACGEFYGHSPHRDRDTDRSFERTDLLNKPAERLSMLQEPLEDGLT 515 (774)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~L~~~~~~~~~ 515 (774)
............+.. .|.. ..........+.++
T Consensus 508 ------------~~~~ri~~I~~~Il~----~~~~-------------------------------~~~~~~~~~~g~ka 540 (1038)
T 2w00_A 508 ------------LHPMRIQEITQYILN----NFRQ-------------------------------KTHRTFPGSKGFNA 540 (1038)
T ss_dssp ------------TCHHHHHHHHHHHHH----HHHH-------------------------------HTTCSSSSCCCCEE
T ss_pred ------------cCHHHHHHHHHHHHH----HHHH-------------------------------hhhhhcccCCCCcE
Confidence 000000000000000 0000 00000001134589
Q ss_pred EEEeCchHHHHHHHHHHHhCC------------Cce-EEecCC----------C----------CH--------------
Q 004098 516 IIYVPTRKETLSIAKYLCGFG------------VKA-AAYNAS----------L----------PK-------------- 548 (774)
Q Consensus 516 IIF~~sr~~~~~l~~~L~~~g------------~~~-~~~h~~----------l----------~~-------------- 548 (774)
||||+++..|..+++.|.+.+ +++ ..+|++ + ++
T Consensus 541 mVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn 620 (1038)
T 2w00_A 541 MLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYN 620 (1038)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 999999999999999998754 455 456642 2 22
Q ss_pred ---------------HHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCc----
Q 004098 549 ---------------SQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHL---- 609 (774)
Q Consensus 549 ---------------~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~---- 609 (774)
.+|..++++|++|+++|||+|+++.+|+|+|.+ .|+++|.|.+...|+|++||++|.+..
T Consensus 621 ~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~ 699 (1038)
T 2w00_A 621 SHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTF 699 (1038)
T ss_dssp HHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCS
T ss_pred HHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCc
Confidence 147889999999999999999999999999999 788999999999999999999998764
Q ss_pred ceEEEEee
Q 004098 610 ADCVLYAN 617 (774)
Q Consensus 610 g~~il~~~ 617 (774)
|.++.|.+
T Consensus 700 G~IVdf~~ 707 (1038)
T 2w00_A 700 GNIVTFRD 707 (1038)
T ss_dssp EEEEESSC
T ss_pred EEEEEccc
Confidence 66666654
No 61
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.96 E-value=1.4e-28 Score=249.24 Aligned_cols=194 Identities=16% Similarity=0.220 Sum_probs=151.4
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc------CCeEEEEccchHHHHH
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLISLMHD 228 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~------~~~~LVvsPt~~L~~q 228 (774)
.++.+.+.+.|+ .+||..|+++|.++++.+++|+|+++++|||+|||++|++|++.. ++++|||+||++|+.|
T Consensus 9 ~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q 87 (219)
T 1q0u_A 9 FPFQPFIIEAIK-TLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQ 87 (219)
T ss_dssp SCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHH
Confidence 457788999998 579999999999999999999999999999999999999999853 5689999999999999
Q ss_pred HHHHHHhc--------CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc
Q 004098 229 QCSKLSKH--------GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (774)
Q Consensus 229 q~~~l~~~--------gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~ 300 (774)
+.+.+.++ ++.+..+.++..... ........++|+|+||+++.+++. .+...+.++++|||||||++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~Iiv~Tp~~l~~~l~--~~~~~~~~~~~lViDEah~~~~ 164 (219)
T 1q0u_A 88 IYHETLKITKFCPKDRMIVARCLIGGTDKQK-ALEKLNVQPHIVIGTPGRINDFIR--EQALDVHTAHILVVDEADLMLD 164 (219)
T ss_dssp HHHHHHHHHTTSCGGGCCCEEEECCCSHHHH-TTCCCSSCCSEEEECHHHHHHHHH--TTCCCGGGCCEEEECSHHHHHH
T ss_pred HHHHHHHHhhhcccccceEEEEEeCCCCHHH-HHHHcCCCCCEEEeCHHHHHHHHH--cCCCCcCcceEEEEcCchHHhh
Confidence 99998875 567777777654322 112223468999999999987765 3444567899999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcCCCCCceEEEccCCCC
Q 004098 301 WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLHMSKGTKFVLTSFFRP 368 (774)
Q Consensus 301 ~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~~~~~~~~~~~~~~r~ 368 (774)
|| |...+..+ ... ++.+.|++++|||++.++.+.+...+. ++..+.....++
T Consensus 165 ~~--~~~~l~~i---~~~--------~~~~~~~l~~SAT~~~~~~~~~~~~~~---~p~~~~~~~~~~ 216 (219)
T 1q0u_A 165 MG--FITDVDQI---AAR--------MPKDLQMLVFSATIPEKLKPFLKKYME---NPTFVHVLEHHH 216 (219)
T ss_dssp TT--CHHHHHHH---HHT--------SCTTCEEEEEESCCCGGGHHHHHHHCS---SCEEEECC----
T ss_pred hC--hHHHHHHH---HHh--------CCcccEEEEEecCCCHHHHHHHHHHcC---CCeEEEeecccc
Confidence 98 77766665 222 334789999999999988887777664 344444444433
No 62
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.95 E-value=3.1e-28 Score=253.63 Aligned_cols=182 Identities=24% Similarity=0.279 Sum_probs=150.9
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc----------cCCeEEEEccchHH
Q 004098 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----------TGKVVVVISPLISL 225 (774)
Q Consensus 156 ~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~----------~~~~~LVvsPt~~L 225 (774)
.+.+.+.+.|+ .+||..|+++|.++++.++.|+|++++||||+|||++|++|++. .+.++|||+||++|
T Consensus 60 ~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~L 138 (262)
T 3ly5_A 60 LVNENTLKAIK-EMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTREL 138 (262)
T ss_dssp CCCHHHHHHHH-HTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHH
T ss_pred ccCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHH
Confidence 37788999998 48999999999999999999999999999999999999999984 47789999999999
Q ss_pred HHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccC
Q 004098 226 MHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKW 301 (774)
Q Consensus 226 ~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~ 301 (774)
+.|+++.++++ ++.+..+.++.........+.. +++|+|+||+++.+.+.. .....+.++++|||||||++.+|
T Consensus 139 a~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~-~~~~~~~~l~~lViDEah~l~~~ 216 (262)
T 3ly5_A 139 AMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN-GINIIVATPGRLLDHMQN-TPGFMYKNLQCLVIDEADRILDV 216 (262)
T ss_dssp HHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH-CCSEEEECHHHHHHHHHH-CTTCCCTTCCEEEECSHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC-CCCEEEEcHHHHHHHHHc-cCCcccccCCEEEEcChHHHhhh
Confidence 99999999885 5677778887766544444433 489999999999876652 11234578999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcC
Q 004098 302 GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (774)
Q Consensus 302 g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~ 353 (774)
| |++.+..+.. .++...|+++||||++..+.+.+...|.
T Consensus 217 ~--~~~~l~~i~~-----------~~~~~~q~l~~SAT~~~~v~~~~~~~l~ 255 (262)
T 3ly5_A 217 G--FEEELKQIIK-----------LLPTRRQTMLFSATQTRKVEDLARISLK 255 (262)
T ss_dssp T--CHHHHHHHHH-----------HSCSSSEEEEECSSCCHHHHHHHHHHCS
T ss_pred h--HHHHHHHHHH-----------hCCCCCeEEEEEecCCHHHHHHHHHHcC
Confidence 8 9998888733 2334789999999999999887766664
No 63
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=1.1e-27 Score=240.19 Aligned_cols=182 Identities=19% Similarity=0.208 Sum_probs=150.3
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc------CCeEEEEccchHHHHH
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLISLMHD 228 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~------~~~~LVvsPt~~L~~q 228 (774)
.++++.+.+.|. .+||..|+|+|.++++.+++++|+++.+|||+|||++|++|++.. ++++||++||++|+.|
T Consensus 8 ~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 86 (206)
T 1vec_A 8 YCLKRELLMGIF-EMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQ 86 (206)
T ss_dssp SCCCHHHHHHHH-TTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHH
T ss_pred cCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHH
Confidence 457788999998 579999999999999999999999999999999999999999853 4689999999999999
Q ss_pred HHHHHHhc-----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCC
Q 004098 229 QCSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303 (774)
Q Consensus 229 q~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~ 303 (774)
+.+.+.++ ++.+..+.++...... .......++|+|+||+++.+++. .+...+.++++|||||||++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~i~v~T~~~l~~~~~--~~~~~~~~~~~lViDEah~~~~~~- 162 (206)
T 1vec_A 87 VSQICIQVSKHMGGAKVMATTGGTNLRDD-IMRLDDTVHVVIATPGRILDLIK--KGVAKVDHVQMIVLDEADKLLSQD- 162 (206)
T ss_dssp HHHHHHHHTTTSSSCCEEEECSSSCHHHH-HHHTTSCCSEEEECHHHHHHHHH--TTCSCCTTCCEEEEETHHHHTSTT-
T ss_pred HHHHHHHHHhhcCCceEEEEeCCccHHHH-HHhcCCCCCEEEeCHHHHHHHHH--cCCcCcccCCEEEEEChHHhHhhC-
Confidence 99999875 5677778877665433 33345678999999999987665 334456789999999999998876
Q ss_pred CcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcC
Q 004098 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (774)
Q Consensus 304 ~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~ 353 (774)
|...+..+.. . ++.+.|++++|||++..+.+.+...++
T Consensus 163 -~~~~l~~i~~---~--------~~~~~~~l~~SAT~~~~~~~~~~~~l~ 200 (206)
T 1vec_A 163 -FVQIMEDIIL---T--------LPKNRQILLYSATFPLSVQKFMNSHLE 200 (206)
T ss_dssp -THHHHHHHHH---H--------SCTTCEEEEEESCCCHHHHHHHHHHCS
T ss_pred -cHHHHHHHHH---h--------CCccceEEEEEeeCCHHHHHHHHHHcC
Confidence 8877777632 2 234789999999999998888877774
No 64
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.95 E-value=4.9e-28 Score=248.40 Aligned_cols=183 Identities=20% Similarity=0.257 Sum_probs=144.8
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc------cCCeEEEEccchHHHHH
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHD 228 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~------~~~~~LVvsPt~~L~~q 228 (774)
..+.+.+.+.|. .+||..|+++|.++++.+++|+|+++++|||+|||++|++|++. .++++|||+||++|+.|
T Consensus 35 l~l~~~l~~~l~-~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q 113 (237)
T 3bor_A 35 MNLKESLLRGIY-AYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQ 113 (237)
T ss_dssp SCCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHH
T ss_pred cCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHH
Confidence 457788899997 57999999999999999999999999999999999999999975 35699999999999999
Q ss_pred HHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCC
Q 004098 229 QCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (774)
Q Consensus 229 q~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~ 304 (774)
+.+.+.++ ++.+..+.++.........+..+.++|+|+||++|.+++. .+...+..+++|||||||++.+|+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~--~~~~~~~~~~~lViDEah~~~~~~-- 189 (237)
T 3bor_A 114 IQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLN--RRYLSPKWIKMFVLDEADEMLSRG-- 189 (237)
T ss_dssp HHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHH--TTSSCSTTCCEEEEESHHHHHHTT--
T ss_pred HHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHH--hCCcCcccCcEEEECCchHhhccC--
Confidence 99999886 4677777777665444444555568999999999988765 344456789999999999999988
Q ss_pred cHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcC
Q 004098 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (774)
Q Consensus 305 fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~ 353 (774)
|...+..+. .. ++...|++++|||+++++.+.+...+.
T Consensus 190 ~~~~l~~i~---~~--------~~~~~~~i~~SAT~~~~~~~~~~~~l~ 227 (237)
T 3bor_A 190 FKDQIYEIF---QK--------LNTSIQVVLLSATMPTDVLEVTKKFMR 227 (237)
T ss_dssp CHHHHHHHH---HH--------SCTTCEEEEECSSCCHHHHHHHHHHCS
T ss_pred cHHHHHHHH---Hh--------CCCCCeEEEEEEecCHHHHHHHHHHCC
Confidence 787776652 22 234789999999999998887777764
No 65
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=245.69 Aligned_cols=183 Identities=21% Similarity=0.254 Sum_probs=152.0
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc------CCeEEEEccchHHHHH
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLISLMHD 228 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~------~~~~LVvsPt~~L~~q 228 (774)
..+.+.+.+.|+ .+||..|+++|.++++.+++|+|+++++|||+|||++|++|++.. ++++|||+||++|+.|
T Consensus 48 l~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q 126 (249)
T 3ber_A 48 LGVTDVLCEACD-QLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQ 126 (249)
T ss_dssp GTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHH
T ss_pred cCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHH
Confidence 457788899998 689999999999999999999999999999999999999999752 5689999999999999
Q ss_pred HHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCC
Q 004098 229 QCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (774)
Q Consensus 229 q~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~ 304 (774)
+.+.+.++ ++.+..+.++....... ......++|+|+||++|.+++... ....+.++++|||||||++.+|+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~l~~~~~lViDEah~l~~~~-- 202 (249)
T 3ber_A 127 ISEQFEALGSSIGVQSAVIVGGIDSMSQS-LALAKKPHIIIATPGRLIDHLENT-KGFNLRALKYLVMDEADRILNMD-- 202 (249)
T ss_dssp HHHHHHHHHGGGTCCEEEECTTSCHHHHH-HHHHTCCSEEEECHHHHHHHHHHS-TTCCCTTCCEEEECSHHHHHHTT--
T ss_pred HHHHHHHHhccCCeeEEEEECCCChHHHH-HHhcCCCCEEEECHHHHHHHHHcC-CCcCccccCEEEEcChhhhhccC--
Confidence 99998876 78888888887664433 334567899999999998776521 22346779999999999999987
Q ss_pred cHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcC
Q 004098 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (774)
Q Consensus 305 fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~ 353 (774)
|++.+..+. ..++.+.++++||||++..+.+.+...|.
T Consensus 203 ~~~~l~~i~-----------~~~~~~~~~l~~SAT~~~~v~~~~~~~l~ 240 (249)
T 3ber_A 203 FETEVDKIL-----------KVIPRDRKTFLFSATMTKKVQKLQRAALK 240 (249)
T ss_dssp CHHHHHHHH-----------HSSCSSSEEEEEESSCCHHHHHHHHHHCS
T ss_pred hHHHHHHHH-----------HhCCCCCeEEEEeccCCHHHHHHHHHHCC
Confidence 899888773 23345789999999999998886666664
No 66
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=1.4e-26 Score=270.75 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=102.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCC-
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW- 589 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~- 589 (774)
.+.++||||+|++.++.++++|.+.|+++..+||++++.+|.+++++|+.|+++|||||+++++|+|+|+|++||++|.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----CCCHHHHHHHhhccccCCCcceEEEEeeCC
Q 004098 590 ----PQSLEAYYQEAGRAGRDGHLADCVLYANLS 619 (774)
Q Consensus 590 ----p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~ 619 (774)
|.|..+|+||+|||||.| .|.|++|++..
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~ 550 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRV 550 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSC
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCC
Confidence 999999999999999995 89999998644
No 67
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=1.3e-27 Score=242.29 Aligned_cols=183 Identities=17% Similarity=0.209 Sum_probs=150.7
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc------CCeEEEEccchHHHH
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT------GKVVVVISPLISLMH 227 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~------~~~~LVvsPt~~L~~ 227 (774)
...+.+.+.+.|. .+||..|+|+|.++++.+++++|+++++|||+|||++|++|++.. +.++|||+||++|+.
T Consensus 18 ~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 96 (220)
T 1t6n_A 18 DFLLKPELLRAIV-DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAF 96 (220)
T ss_dssp TSCCCHHHHHHHH-HTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHH
T ss_pred hcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHH
Confidence 3467789999998 579999999999999999999999999999999999999999853 458999999999999
Q ss_pred HHHHHHHhc-----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccC-
Q 004098 228 DQCSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKW- 301 (774)
Q Consensus 228 qq~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~- 301 (774)
|+.+.+.++ ++++..+.++.........+..+.++|+|+||+++.+++. .....+.++++|||||||++.++
T Consensus 97 q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~--~~~~~~~~~~~lViDEah~~~~~~ 174 (220)
T 1t6n_A 97 QISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALAR--NKSLNLKHIKHFILDECDKMLEQL 174 (220)
T ss_dssp HHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHH--TTSSCCTTCCEEEEESHHHHHSSH
T ss_pred HHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHH--hCCCCcccCCEEEEcCHHHHhccc
Confidence 999999886 6888888888776655555666678999999999987766 33345678999999999999874
Q ss_pred CCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHc
Q 004098 302 GHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSL 352 (774)
Q Consensus 302 g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L 352 (774)
+ |+..+..+. . .++.+.|++++|||++.++.+.+...+
T Consensus 175 ~--~~~~~~~i~---~--------~~~~~~~~i~~SAT~~~~~~~~~~~~~ 212 (220)
T 1t6n_A 175 D--MRRDVQEIF---R--------MTPHEKQVMMFSATLSKEIRPVCRKFM 212 (220)
T ss_dssp H--HHHHHHHHH---H--------TSCSSSEEEEEESCCCTTTHHHHHTTC
T ss_pred C--cHHHHHHHH---H--------hCCCcCeEEEEEeecCHHHHHHHHHHc
Confidence 4 666666552 2 233478999999999988877555544
No 68
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.95 E-value=1.6e-27 Score=243.30 Aligned_cols=181 Identities=19% Similarity=0.221 Sum_probs=147.1
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc------cCCeEEEEccchHHHHH
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHD 228 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~------~~~~~LVvsPt~~L~~q 228 (774)
..+.+.+.+.|+ .+||..|+++|.++++.+++|+|+++++|||+|||++|++|++. .++++|||+||++|+.|
T Consensus 29 l~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q 107 (230)
T 2oxc_A 29 LLLSRPVLEGLR-AAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQ 107 (230)
T ss_dssp GTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHH
T ss_pred cCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHH
Confidence 356788899998 57999999999999999999999999999999999999999874 24699999999999999
Q ss_pred HHHHHHhc-----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCC
Q 004098 229 QCSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303 (774)
Q Consensus 229 q~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~ 303 (774)
+.+.+.++ ++++..+.++......... ...++|+|+||+++.+++. .....+.++++|||||||++.+||.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~Iiv~Tp~~l~~~~~--~~~~~~~~~~~lViDEah~~~~~~~ 183 (230)
T 2oxc_A 108 IHSVITAIGIKMEGLECHVFIGGTPLSQDKTR--LKKCHIAVGSPGRIKQLIE--LDYLNPGSIRLFILDEADKLLEEGS 183 (230)
T ss_dssp HHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH--TTSCSEEEECHHHHHHHHH--TTSSCGGGCCEEEESSHHHHHSTTS
T ss_pred HHHHHHHHhcccCCceEEEEeCCCCHHHHHHh--ccCCCEEEECHHHHHHHHh--cCCcccccCCEEEeCCchHhhcCcc
Confidence 99999886 5778888887765433222 2468999999999988765 3444567899999999999999873
Q ss_pred CcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHc
Q 004098 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSL 352 (774)
Q Consensus 304 ~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L 352 (774)
|++.+..+. .. ++...|+++||||++.++.+.+...+
T Consensus 184 -~~~~~~~i~---~~--------~~~~~~~l~lSAT~~~~~~~~~~~~~ 220 (230)
T 2oxc_A 184 -FQEQINWIY---SS--------LPASKQMLAVSATYPEFLANALTKYM 220 (230)
T ss_dssp -SHHHHHHHH---HH--------SCSSCEEEEEESCCCHHHHHHHTTTC
T ss_pred -hHHHHHHHH---Hh--------CCCCCeEEEEEeccCHHHHHHHHHHc
Confidence 788877663 22 23478899999999988766554444
No 69
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.95 E-value=3.1e-27 Score=242.25 Aligned_cols=182 Identities=23% Similarity=0.279 Sum_probs=145.6
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc----------cCCeEEEEccch
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----------TGKVVVVISPLI 223 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~----------~~~~~LVvsPt~ 223 (774)
..++++.+.+.|+ .+||..|+++|.++++.+++|+|+++++|||+|||++|++|++. .++++|||+||+
T Consensus 29 ~~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~ 107 (236)
T 2pl3_A 29 DFPLSKKTLKGLQ-EAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTR 107 (236)
T ss_dssp GSCCCHHHHHHHH-HTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSH
T ss_pred hcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCH
Confidence 3467889999998 57999999999999999999999999999999999999999874 367899999999
Q ss_pred HHHHHHHHHHHhcC----CcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 224 SLMHDQCSKLSKHG----VTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 224 ~L~~qq~~~l~~~g----i~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
+|+.|+.+.+.+++ +.+..+.++.........+ ..++|+|+||++|.+.+.. .....+.++++|||||||++.
T Consensus 108 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~iiv~Tp~~l~~~l~~-~~~~~~~~~~~lViDEah~~~ 184 (236)
T 2pl3_A 108 ELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI--NNINILVCTPGRLLQHMDE-TVSFHATDLQMLVLDEADRIL 184 (236)
T ss_dssp HHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH--TTCSEEEECHHHHHHHHHH-CSSCCCTTCCEEEETTHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC--CCCCEEEECHHHHHHHHHh-cCCcccccccEEEEeChHHHh
Confidence 99999999999864 7788888877654433322 4689999999999876552 112345689999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHc
Q 004098 300 KWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSL 352 (774)
Q Consensus 300 ~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L 352 (774)
+|| |.+.+..+. . .++...|+++||||++..+.+.....+
T Consensus 185 ~~~--~~~~~~~i~---~--------~~~~~~~~l~~SAT~~~~~~~~~~~~~ 224 (236)
T 2pl3_A 185 DMG--FADTMNAVI---E--------NLPKKRQTLLFSATQTKSVKDLARLSL 224 (236)
T ss_dssp HTT--THHHHHHHH---H--------TSCTTSEEEEEESSCCHHHHHHHHHSC
T ss_pred cCC--cHHHHHHHH---H--------hCCCCCeEEEEEeeCCHHHHHHHHHhC
Confidence 998 787776662 2 234478899999999998877444433
No 70
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.95 E-value=9.4e-28 Score=248.82 Aligned_cols=183 Identities=18% Similarity=0.254 Sum_probs=146.9
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc---------------CCeEEEEc
Q 004098 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT---------------GKVVVVIS 220 (774)
Q Consensus 156 ~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~---------------~~~~LVvs 220 (774)
.+++.+.+.|+ .+||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.. ++++|||+
T Consensus 29 ~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~ 107 (253)
T 1wrb_A 29 KLDPTIRNNIL-LASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILA 107 (253)
T ss_dssp SCCCSTTTTTT-TTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEEC
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEE
Confidence 34455566665 579999999999999999999999999999999999999999742 35899999
Q ss_pred cchHHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 004098 221 PLISLMHDQCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVH 296 (774)
Q Consensus 221 Pt~~L~~qq~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH 296 (774)
||++|+.|+.+.+.++ ++.++.+.++....... .....+++|+|+||++|.+++. .....+.++++|||||||
T Consensus 108 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~Ivv~Tp~~l~~~l~--~~~~~~~~~~~lViDEah 184 (253)
T 1wrb_A 108 PTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQI-REVQMGCHLLVATPGRLVDFIE--KNKISLEFCKYIVLDEAD 184 (253)
T ss_dssp SSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHH-HHHSSCCSEEEECHHHHHHHHH--TTSBCCTTCCEEEEETHH
T ss_pred CCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHH-HHhCCCCCEEEECHHHHHHHHH--cCCCChhhCCEEEEeCHH
Confidence 9999999999999885 46778888877664433 3345678999999999988766 333456788999999999
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhcccccccccC--CCCEEEEeccCCHHHHHHHHHHcC
Q 004098 297 CVSKWGHDFRPDYRRLSVLRENFGANNLKSLKF--DIPLMALTATATIQVREDILKSLH 353 (774)
Q Consensus 297 ~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~--~~~il~lTAT~~~~~~~~i~~~L~ 353 (774)
++.+|| |.+.+..+.... .++. +.|+++||||+++++.+.+...+.
T Consensus 185 ~~~~~~--~~~~~~~i~~~~---------~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~ 232 (253)
T 1wrb_A 185 RMLDMG--FEPQIRKIIEES---------NMPSGINRQTLMFSATFPKEIQKLAADFLY 232 (253)
T ss_dssp HHHHTT--CHHHHHHHHHSS---------CCCCGGGCEEEEEESSCCHHHHHHHHHHCS
T ss_pred HHHhCc--hHHHHHHHHhhc---------cCCCCCCcEEEEEEEeCCHHHHHHHHHHcC
Confidence 999998 898888774311 1122 578999999999998877766664
No 71
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.95 E-value=7.5e-27 Score=234.12 Aligned_cols=182 Identities=17% Similarity=0.188 Sum_probs=149.3
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc---------cCCeEEEEccchHH
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL---------TGKVVVVISPLISL 225 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~---------~~~~~LVvsPt~~L 225 (774)
.++.+.+.+.|+ .+|+..|+|+|.++++.+++|+|+++.+|||+|||++|++|++. .++++||++|+++|
T Consensus 6 ~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L 84 (207)
T 2gxq_A 6 FPLKPEILEALH-GRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTREL 84 (207)
T ss_dssp SCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHH
T ss_pred cCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHH
Confidence 457788999998 57999999999999999999999999999999999999999874 35689999999999
Q ss_pred HHHHHHHHHhc--CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCC
Q 004098 226 MHDQCSKLSKH--GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303 (774)
Q Consensus 226 ~~qq~~~l~~~--gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~ 303 (774)
+.|+.+.+.++ .+.+..+.++.........+ ...++|+|+||+++.+++. .+...+.++++|||||||++.+++
T Consensus 85 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~T~~~l~~~~~--~~~~~~~~~~~iViDEah~~~~~~- 160 (207)
T 2gxq_A 85 ALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL-LRGADAVVATPGRALDYLR--QGVLDLSRVEVAVLDEADEMLSMG- 160 (207)
T ss_dssp HHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH-HHCCSEEEECHHHHHHHHH--HTSSCCTTCSEEEEESHHHHHHTT-
T ss_pred HHHHHHHHHHHhhcceEEEEECCCChHHHHHHh-hCCCCEEEECHHHHHHHHH--cCCcchhhceEEEEEChhHhhccc-
Confidence 99999999997 46778888777654433333 3458999999999988776 344456789999999999999887
Q ss_pred CcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcC
Q 004098 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (774)
Q Consensus 304 ~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~ 353 (774)
|...+..+. ..++.+.|++++|||+++.+.+.+...++
T Consensus 161 -~~~~~~~i~-----------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 198 (207)
T 2gxq_A 161 -FEEEVEALL-----------SATPPSRQTLLFSATLPSWAKRLAERYMK 198 (207)
T ss_dssp -CHHHHHHHH-----------HTSCTTSEEEEECSSCCHHHHHHHHHHCS
T ss_pred -hHHHHHHHH-----------HhCCccCeEEEEEEecCHHHHHHHHHHcC
Confidence 888877762 22344789999999999887776655553
No 72
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.94 E-value=4.5e-27 Score=238.93 Aligned_cols=181 Identities=20% Similarity=0.216 Sum_probs=143.9
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc------cCCeEEEEccchHHHHH
Q 004098 155 SDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISLMHD 228 (774)
Q Consensus 155 ~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~------~~~~~LVvsPt~~L~~q 228 (774)
..+.+.+.+.|+ .+||..|+|+|.++++.+++|+|+++++|||+|||++|++|++. .++++||++|+++|+.|
T Consensus 19 l~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q 97 (224)
T 1qde_A 19 MELDENLLRGVF-GYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQ 97 (224)
T ss_dssp GTCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHH
T ss_pred cCCCHHHHHHHH-HCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHH
Confidence 457788999998 57999999999999999999999999999999999999999984 35699999999999999
Q ss_pred HHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCC
Q 004098 229 QCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHD 304 (774)
Q Consensus 229 q~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~ 304 (774)
+.+.+.++ ++.+..+.++......... . ..++|+|+||++|.+.+. .....+.++++|||||||++.+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~-~~~~iiv~Tp~~l~~~~~--~~~~~~~~~~~iViDEah~~~~~~-- 171 (224)
T 1qde_A 98 IQKVVMALAFHMDIKVHACIGGTSFVEDAEG-L-RDAQIVVGTPGRVFDNIQ--RRRFRTDKIKMFILDEADEMLSSG-- 171 (224)
T ss_dssp HHHHHHHHTTTSCCCEEEECC-----------C-TTCSEEEECHHHHHHHHH--TTSSCCTTCCEEEEETHHHHHHTT--
T ss_pred HHHHHHHHhcccCceEEEEeCCcchHHHHhc-C-CCCCEEEECHHHHHHHHH--hCCcchhhCcEEEEcChhHHhhhh--
Confidence 99999875 5778888877654332222 2 237999999999987665 334456789999999999999988
Q ss_pred cHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcC
Q 004098 305 FRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (774)
Q Consensus 305 fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~ 353 (774)
|...+..+.. . +++..|+++||||+++.+.+.+...++
T Consensus 172 ~~~~l~~i~~---~--------~~~~~~~i~lSAT~~~~~~~~~~~~~~ 209 (224)
T 1qde_A 172 FKEQIYQIFT---L--------LPPTTQVVLLSATMPNDVLEVTTKFMR 209 (224)
T ss_dssp CHHHHHHHHH---H--------SCTTCEEEEEESSCCHHHHHHHHHHCS
T ss_pred hHHHHHHHHH---h--------CCccCeEEEEEeecCHHHHHHHHHHCC
Confidence 8877776632 2 234789999999999998887776664
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.94 E-value=6.7e-28 Score=248.66 Aligned_cols=187 Identities=21% Similarity=0.241 Sum_probs=144.6
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc-------cCCeEEEEccchHHHHH
Q 004098 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL-------TGKVVVVISPLISLMHD 228 (774)
Q Consensus 156 ~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~-------~~~~~LVvsPt~~L~~q 228 (774)
.+.+.+.+.|. .+||..|+|+|.++++.+++|+|+++.+|||+|||++|++|++. .+.++|||+||++|+.|
T Consensus 35 ~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q 113 (245)
T 3dkp_A 35 KINSRLLQNIL-DAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQ 113 (245)
T ss_dssp CCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHH
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHH
Confidence 56778888888 46999999999999999999999999999999999999999974 35689999999999999
Q ss_pred HHHHHHhc----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCC-C
Q 004098 229 QCSKLSKH----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWG-H 303 (774)
Q Consensus 229 q~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g-~ 303 (774)
+.+.+.++ ++.+..+.++..............++|+|+||++|..++........+.++++|||||||++.+|+ .
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~ 193 (245)
T 3dkp_A 114 IHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKT 193 (245)
T ss_dssp HHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--
T ss_pred HHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccc
Confidence 99999986 566655544322211111223456899999999998776521113456789999999999999876 3
Q ss_pred CcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcC
Q 004098 304 DFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (774)
Q Consensus 304 ~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~ 353 (774)
.|++.+..+. ..+. +++.|+++||||++.++.+.+...++
T Consensus 194 ~~~~~~~~i~---~~~~-------~~~~~~~~~SAT~~~~v~~~~~~~l~ 233 (245)
T 3dkp_A 194 GFRDQLASIF---LACT-------SHKVRRAMFSATFAYDVEQWCKLNLD 233 (245)
T ss_dssp CHHHHHHHHH---HHCC-------CTTCEEEEEESSCCHHHHHHHHHHSS
T ss_pred cHHHHHHHHH---HhcC-------CCCcEEEEEeccCCHHHHHHHHHhCC
Confidence 4787777762 2221 23689999999999988886666664
No 74
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.94 E-value=9e-27 Score=247.14 Aligned_cols=181 Identities=17% Similarity=0.215 Sum_probs=147.8
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEecCCCchHHHHHHhhhc------cCCeEEEEccchHH
Q 004098 154 GSDWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAH--HDCLVLAATGSGKSLCFQIPALL------TGKVVVVISPLISL 225 (774)
Q Consensus 154 ~~~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g--~d~lv~apTGsGKTl~~~lpal~------~~~~~LVvsPt~~L 225 (774)
...+.+.+.+.|. .+||..|+++|.++|+.++.| +|+++++|||+|||++|++|++. .++.+|||+||++|
T Consensus 96 ~l~l~~~l~~~l~-~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreL 174 (300)
T 3fmo_B 96 ELRLKPQLLQGVY-AMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYEL 174 (300)
T ss_dssp GGTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred hcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHH
Confidence 3467788999998 479999999999999999987 99999999999999999999985 24589999999999
Q ss_pred HHHHHHHHHhc-----CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccccc
Q 004098 226 MHDQCSKLSKH-----GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (774)
Q Consensus 226 ~~qq~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~ 300 (774)
+.|+++.+.++ ++.+..+.++...... ....++|+|+||++|.+++.. .+.+.+.++++|||||||++++
T Consensus 175 a~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~IlV~TP~~l~~~l~~-~~~~~l~~l~~lVlDEad~l~~ 249 (300)
T 3fmo_B 175 ALQTGKVIEQMGKFYPELKLAYAVRGNKLERG----QKISEQIVIGTPGTVLDWCSK-LKFIDPKKIKVFVLDEADVMIA 249 (300)
T ss_dssp HHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT----CCCCCSEEEECHHHHHHHHTT-TCCCCGGGCSEEEETTHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh----hcCCCCEEEECHHHHHHHHHh-cCCCChhhceEEEEeCHHHHhh
Confidence 99999988875 4667777766554221 145679999999999887742 1344567899999999999997
Q ss_pred -CCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHHHHcC
Q 004098 301 -WGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDILKSLH 353 (774)
Q Consensus 301 -~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~~~L~ 353 (774)
+| |...+..+ +..++.+.|+++||||++..+...+...+.
T Consensus 250 ~~~--~~~~~~~i-----------~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~ 290 (300)
T 3fmo_B 250 TQG--HQDQSIRI-----------QRMLPRNCQMLLFSATFEDSVWKFAQKVVP 290 (300)
T ss_dssp STT--HHHHHHHH-----------HTTSCTTCEEEEEESCCCHHHHHHHHHHSS
T ss_pred ccC--cHHHHHHH-----------HHhCCCCCEEEEEeccCCHHHHHHHHHHCC
Confidence 66 88887777 333455899999999999999887777764
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=9.6e-25 Score=255.13 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=103.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcccCCcceEEEeCC-
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGIDKLNVRRIIHYGW- 589 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GIDip~V~~VI~~d~- 589 (774)
.+.++||||+|++.++.+++.|...|+++..+||++++.+|..++++|++|+++|||||+++++|+|+|+|++||++|.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----CCCHHHHHHHhhccccCCCcceEEEEeeCC
Q 004098 590 ----PQSLEAYYQEAGRAGRDGHLADCVLYANLS 619 (774)
Q Consensus 590 ----p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~ 619 (774)
|.|..+|+||+|||||. ..|.|++|++..
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~ 556 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKI 556 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSC
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCC
Confidence 99999999999999998 789999998754
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=1.4e-23 Score=240.76 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=117.1
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhh---ccCCeEEEEccchHHHHHHHHHHHhc-
Q 004098 161 VNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLISLMHDQCSKLSKH- 236 (774)
Q Consensus 161 l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal---~~~~~~LVvsPt~~L~~qq~~~l~~~- 236 (774)
+.++-++.+|+ .|+++|..+++.+++|+ |+.|+||+|||++|.+|++ ..+..++||+||++|+.|....+..+
T Consensus 68 vREAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 68 TRESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp HHHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 44555678899 89999999999999998 9999999999999999995 35778999999999999998888774
Q ss_pred ---CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHH-HHHHHHHHHH------HHhc---CccEEEEecccccc-cCC
Q 004098 237 ---GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETV-IRLIKPLQRL------AESR---GIALFAIDEVHCVS-KWG 302 (774)
Q Consensus 237 ---gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l-~~ll~~~~~~------~~~~---~i~~iVIDEaH~l~-~~g 302 (774)
|+++..+.++.+... +... ..++|+|+||++| .+++. .+. ..+. .+.++||||||.|+ +.+
T Consensus 145 ~~lGLsv~~i~Gg~~~~~--r~~a-y~~DIvyGTpgrlgfDyLr--d~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDea 219 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAE--RRKA-YLADVTYVTNSELGFDYLR--DNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEA 219 (997)
T ss_dssp HTTTCCEEECCTTCCHHH--HHHH-HTSSEEEEEHHHHHHHHHH--HTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSST
T ss_pred HhcCCeEEEEeCCCCHHH--HHHH-cCCCEEEECchhhhhHHHH--HhhhcchhhcccccCCCcceEEEechHHHHHhCC
Confidence 899999998877532 2222 2479999999999 67666 321 2356 79999999999986 333
Q ss_pred C----------CcHHHHHHHHHHHHHhc
Q 004098 303 H----------DFRPDYRRLSVLRENFG 320 (774)
Q Consensus 303 ~----------~fr~~~~~l~~l~~~~~ 320 (774)
. .-...|..+..+...++
T Consensus 220 rtPLIISgp~~~~~~lY~~~~~~i~~L~ 247 (997)
T 2ipc_A 220 RTPLIISGPAEKATDLYYKMAEIAKKLE 247 (997)
T ss_dssp TSCEEEEESCSSCHHHHHHHHHHHHHSC
T ss_pred CCCeeeeCCCccchHHHHHHHHHHHHhh
Confidence 1 11344555555555554
No 77
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=1.4e-24 Score=218.23 Aligned_cols=124 Identities=27% Similarity=0.379 Sum_probs=112.7
Q ss_pred cCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccC
Q 004098 496 LNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575 (774)
Q Consensus 496 ~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~G 575 (774)
..|...+.+++.. ...+++||||++++.++.+++.|...|+.+..+||+|++++|..+++.|++|+.+|||||+++++|
T Consensus 16 ~~k~~~l~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 16 RGRLEVLSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TSHHHHHHHHHHH-HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 4455556655553 357799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 576 IDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
||+|+|++||+||+|++.+.|+||+|||||.|++|.|++|++..+
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~ 139 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRE 139 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGG
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhH
Confidence 999999999999999999999999999999999999999998765
No 78
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.91 E-value=1.6e-24 Score=208.71 Aligned_cols=125 Identities=22% Similarity=0.311 Sum_probs=114.9
Q ss_pred cccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccc
Q 004098 494 DLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFG 573 (774)
Q Consensus 494 ~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~ 573 (774)
....|...+.++|... ..+++||||++++.++.+++.|...|+.+..+||+|++.+|..++++|++|+++|||||++++
T Consensus 18 ~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 96 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAA 96 (163)
T ss_dssp CGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGT
T ss_pred ChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhh
Confidence 3445666666666553 567999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCC
Q 004098 574 MGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619 (774)
Q Consensus 574 ~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~ 619 (774)
+|||+|++++||+||+|+++..|+||+||+||.|++|.|++|+...
T Consensus 97 ~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 142 (163)
T 2hjv_A 97 RGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAF 142 (163)
T ss_dssp TTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGG
T ss_pred cCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHH
Confidence 9999999999999999999999999999999999999999998744
No 79
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=2.3e-24 Score=209.30 Aligned_cols=123 Identities=22% Similarity=0.336 Sum_probs=114.2
Q ss_pred ccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEeccccc
Q 004098 495 LLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGM 574 (774)
Q Consensus 495 ~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~ 574 (774)
...|...+.++|... ..+++||||++++.++.+++.|...|+.+..+||+|++.+|..++++|++|+.+|||||+++++
T Consensus 15 ~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 93 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 93 (172)
T ss_dssp GGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCST
T ss_pred hHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhc
Confidence 345666666666554 6679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeC
Q 004098 575 GIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANL 618 (774)
Q Consensus 575 GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~ 618 (774)
|||+|++++||+||+|+|+..|+||+|||||.|+.|.+++|++.
T Consensus 94 Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~ 137 (172)
T 1t5i_A 94 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 137 (172)
T ss_dssp TCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECS
T ss_pred CcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcC
Confidence 99999999999999999999999999999999999999999864
No 80
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.91 E-value=1.5e-24 Score=213.17 Aligned_cols=128 Identities=25% Similarity=0.416 Sum_probs=104.5
Q ss_pred cccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccc
Q 004098 494 DLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFG 573 (774)
Q Consensus 494 ~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~ 573 (774)
....|...++++|.......++||||++++.++.+++.|...|+.+..+||+|++.+|..++++|++|+++|||||++++
T Consensus 28 ~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 107 (185)
T 2jgn_A 28 EESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAA 107 (185)
T ss_dssp CGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC---
T ss_pred CcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhh
Confidence 34567777788787765678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCC
Q 004098 574 MGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSM 621 (774)
Q Consensus 574 ~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~ 621 (774)
+|||+|++++||+||+|+++..|+||+|||||.|+.|.|++|++..+.
T Consensus 108 ~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 155 (185)
T 2jgn_A 108 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 155 (185)
T ss_dssp ---CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGG
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhH
Confidence 999999999999999999999999999999999999999999986554
No 81
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.90 E-value=5.2e-24 Score=210.22 Aligned_cols=124 Identities=25% Similarity=0.362 Sum_probs=112.1
Q ss_pred cccCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccc
Q 004098 494 DLLNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFG 573 (774)
Q Consensus 494 ~~~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~ 573 (774)
....|...++++|... .+++||||+++..++.+++.|...|+.+..+||+|++++|.+++++|++|+++|||||++++
T Consensus 38 ~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~ 115 (191)
T 2p6n_A 38 KEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVAS 115 (191)
T ss_dssp CGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHH
T ss_pred ChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchh
Confidence 3446777777777663 46899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCC
Q 004098 574 MGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLS 619 (774)
Q Consensus 574 ~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~ 619 (774)
+|||+|++++||+||+|++++.|+||+|||||.|+.|.|++|++..
T Consensus 116 ~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 116 KGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp TTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 9999999999999999999999999999999999999999998754
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=7.2e-24 Score=206.60 Aligned_cols=122 Identities=20% Similarity=0.312 Sum_probs=108.5
Q ss_pred chhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcc
Q 004098 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGID 577 (774)
Q Consensus 498 k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GID 577 (774)
|...+..++.. ...+++||||++++.++.++..|...|+.+..+||+|++.+|..++++|++|+++|||||+++++|||
T Consensus 21 K~~~L~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid 99 (175)
T 2rb4_A 21 KYQALCNIYGS-ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGID 99 (175)
T ss_dssp HHHHHHHHHTT-SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTC
T ss_pred HHHHHHHHHHh-CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCC
Confidence 55555555554 36779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEEeCCC------CCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 578 KLNVRRIIHYGWP------QSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 578 ip~V~~VI~~d~p------~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
+|++++||+||+| .+...|+||+|||||.|+.|.|++|++..+
T Consensus 100 ~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 148 (175)
T 2rb4_A 100 VKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDE 148 (175)
T ss_dssp CTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGG
T ss_pred cccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccch
Confidence 9999999999999 999999999999999999999999987543
No 83
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.90 E-value=7.3e-24 Score=204.46 Aligned_cols=122 Identities=20% Similarity=0.317 Sum_probs=108.5
Q ss_pred chhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcc
Q 004098 498 KPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGID 577 (774)
Q Consensus 498 k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GID 577 (774)
|...+.+++... ..+++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 17 K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d 95 (165)
T 1fuk_A 17 KYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGID 95 (165)
T ss_dssp HHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCC
T ss_pred HHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCC
Confidence 555566655553 6689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 578 KLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 578 ip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
+|++++||+||+|+++..|+||+|||||.|+.|.|++|++..+
T Consensus 96 ~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 138 (165)
T 1fuk_A 96 VQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 138 (165)
T ss_dssp CCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTT
T ss_pred cccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchH
Confidence 9999999999999999999999999999999999999998554
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.89 E-value=2.4e-23 Score=219.35 Aligned_cols=124 Identities=27% Similarity=0.381 Sum_probs=110.1
Q ss_pred cCchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccC
Q 004098 496 LNKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMG 575 (774)
Q Consensus 496 ~~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~G 575 (774)
..|...+..++... ..+++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 13 ~~K~~~L~~ll~~~-~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~G 91 (300)
T 3i32_A 13 RGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARG 91 (300)
T ss_dssp SSHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCS
T ss_pred HHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcC
Confidence 34555566665543 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCC
Q 004098 576 IDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSS 620 (774)
Q Consensus 576 IDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~ 620 (774)
||+|+|++||+||+|++.+.|+||+|||||.|++|.|++|++..+
T Consensus 92 idi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e 136 (300)
T 3i32_A 92 LDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRE 136 (300)
T ss_dssp TTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSST
T ss_pred ccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHH
Confidence 999999999999999999999999999999999999999998776
No 85
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.87 E-value=9.5e-22 Score=225.37 Aligned_cols=129 Identities=18% Similarity=0.155 Sum_probs=91.7
Q ss_pred hcCCCCCCHHHHHHHHH----HHcCCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEE
Q 004098 168 HFGHSSLKNFQKEALSA----WLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFL 243 (774)
Q Consensus 168 ~~g~~~~r~~Q~~ai~~----il~g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l 243 (774)
..|| .|||+|.+++.. +..|+++++.||||+|||++|++|++..++++||++||++|+.|+++.+.+++++++.+
T Consensus 3 ~~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l 81 (540)
T 2vl7_A 3 VLKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFL 81 (540)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC
T ss_pred CCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEe
Confidence 3477 799999998755 45789999999999999999999999999999999999999999999999988877776
Q ss_pred cCCCCh--------H------------------------HHHHH--------------HHcCCceEEEEChHHHHHHHHH
Q 004098 244 GSGQPD--------N------------------------KVEQK--------------ALRGMYSIIYVCPETVIRLIKP 277 (774)
Q Consensus 244 ~~~~~~--------~------------------------~~~~~--------------~~~~~~~Ilv~TPe~l~~ll~~ 277 (774)
.+.... . ..... .....++|+|+|+..|.+...
T Consensus 82 ~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~- 160 (540)
T 2vl7_A 82 IGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPI- 160 (540)
T ss_dssp ---------------------------------------------------------CTTGGGCSEEEEETHHHHSHHH-
T ss_pred cCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHH-
Confidence 543210 0 00000 012346999999999876433
Q ss_pred HHHHHH-------hcCccEEEEecccccc
Q 004098 278 LQRLAE-------SRGIALFAIDEVHCVS 299 (774)
Q Consensus 278 ~~~~~~-------~~~i~~iVIDEaH~l~ 299 (774)
.+... .....++||||||.+.
T Consensus 161 -~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 161 -RNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp -HHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred -HHhhCcccccccCcCCCEEEEEccccHH
Confidence 22221 2456899999999994
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.79 E-value=3.6e-24 Score=207.68 Aligned_cols=125 Identities=21% Similarity=0.362 Sum_probs=113.3
Q ss_pred CchhHhhhhccCCCCCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCc
Q 004098 497 NKPAERLSMLQEPLEDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGI 576 (774)
Q Consensus 497 ~k~~~ll~~L~~~~~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GI 576 (774)
.|...+.+++.. ...+++||||++++.++.+++.|...|+.+..+||+|++.+|..++++|++|+.+|||||+++++||
T Consensus 16 ~k~~~l~~ll~~-~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 94 (170)
T 2yjt_D 16 HKTALLVHLLKQ-PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGI 94 (170)
Confidence 344445555544 3567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEEeeCCCCC
Q 004098 577 DKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLYANLSSMP 622 (774)
Q Consensus 577 Dip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~~~~~~~~ 622 (774)
|+|++++||+||+|+|+..|+||+|||||.|+.|.|++|++..+..
T Consensus 95 d~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 140 (170)
T 2yjt_D 95 DIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 140 (170)
Confidence 9999999999999999999999999999999999999998766543
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.85 E-value=2.6e-21 Score=194.77 Aligned_cols=168 Identities=17% Similarity=0.120 Sum_probs=109.0
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc---------CCeEEEEccchHHHHH-HHHHHHhc---
Q 004098 170 GHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT---------GKVVVVISPLISLMHD-QCSKLSKH--- 236 (774)
Q Consensus 170 g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~---------~~~~LVvsPt~~L~~q-q~~~l~~~--- 236 (774)
....|+++|.++++.+++++++++.+|||+|||++|+++++.. ++++||++|+++|+.| +.+.+.++
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 109 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 109 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 4447999999999999999999999999999999999998742 6799999999999999 66666665
Q ss_pred CCcEEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHH----HHHhcCccEEEEecccccccCCCCcHHHHHHH
Q 004098 237 GVTACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQR----LAESRGIALFAIDEVHCVSKWGHDFRPDYRRL 312 (774)
Q Consensus 237 gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~----~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l 312 (774)
++.+..+.++........... ..++|+|+||++|.+.+..... ...+.++++|||||||++...+ .+...+..+
T Consensus 110 ~~~v~~~~g~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~-~~~~~~~~~ 187 (216)
T 3b6e_A 110 WYRVIGLSGDTQLKISFPEVV-KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEA-VYNNIMRHY 187 (216)
T ss_dssp TSCEEECCC---CCCCHHHHH-HHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHHHHH
T ss_pred CceEEEEeCCcccchhHHhhc-cCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCC-cHHHHHHHH
Confidence 577777776654322111222 2479999999999876653211 1335788999999999997543 234443333
Q ss_pred HHHH-HHhcc-cccccccCCCCEEEEecc
Q 004098 313 SVLR-ENFGA-NNLKSLKFDIPLMALTAT 339 (774)
Q Consensus 313 ~~l~-~~~~~-~~~~~l~~~~~il~lTAT 339 (774)
...+ ..... ..-....+.+++|+||||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 2211 00000 000001136889999998
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.81 E-value=7.1e-18 Score=193.92 Aligned_cols=128 Identities=17% Similarity=0.092 Sum_probs=97.0
Q ss_pred CCCCCCHHHHHHHHHH----HcCCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhc----CCcEE
Q 004098 170 GHSSLKNFQKEALSAW----LAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKH----GVTAC 241 (774)
Q Consensus 170 g~~~~r~~Q~~ai~~i----l~g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~----gi~~~ 241 (774)
|| .+||+|.+++..+ ..|+|+++.||||+|||++|++|++..++++||++||++|+.|+.+++..+ +++++
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~ 79 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFS 79 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEE
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEE
Confidence 45 6999999977754 468999999999999999999999999999999999999999999999886 67777
Q ss_pred EEcCCCC---------------------------------hHHHHH-----------------HHHcCCceEEEEChHHH
Q 004098 242 FLGSGQP---------------------------------DNKVEQ-----------------KALRGMYSIIYVCPETV 271 (774)
Q Consensus 242 ~l~~~~~---------------------------------~~~~~~-----------------~~~~~~~~Ilv~TPe~l 271 (774)
.+.|... ...... +.....++|||+|+..|
T Consensus 80 ~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l 159 (551)
T 3crv_A 80 FLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYF 159 (551)
T ss_dssp ECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHH
T ss_pred EEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHh
Confidence 7665211 001110 11234579999999998
Q ss_pred HHHHHHHHHHHHh-cCccEEEEeccccccc
Q 004098 272 IRLIKPLQRLAES-RGIALFAIDEVHCVSK 300 (774)
Q Consensus 272 ~~ll~~~~~~~~~-~~i~~iVIDEaH~l~~ 300 (774)
.+... ...... ....++||||||.+.+
T Consensus 160 ~~~~~--~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 160 FIDRY--REFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HCHHH--HTTSCCCSTTEEEEETTGGGGGG
T ss_pred cCHHH--HHhcCCCcCCeEEEEecccchHH
Confidence 76432 211111 3567899999999876
No 89
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.80 E-value=4.7e-19 Score=181.08 Aligned_cols=138 Identities=19% Similarity=0.241 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcCCc-EEEEcCCCChHH
Q 004098 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVT-ACFLGSGQPDNK 251 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~-~~~l~~~~~~~~ 251 (774)
.|+++|.++++.+++++++++++|||+|||++++.++...++.+||++|+++|+.|+.+.+.++++. +..+.++...
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~-- 170 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-- 170 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBC--
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCC--
Confidence 7999999999999999999999999999999999998888899999999999999999999999998 7777766532
Q ss_pred HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCC
Q 004098 252 VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDI 331 (774)
Q Consensus 252 ~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~ 331 (774)
..+|+|+||+.+......+ ...+++|||||||++.... |+ .+ .+.++ ..
T Consensus 171 --------~~~i~v~T~~~l~~~~~~~-----~~~~~llIiDEaH~l~~~~--~~----~i---~~~~~---------~~ 219 (237)
T 2fz4_A 171 --------LKPLTVSTYDSAYVNAEKL-----GNRFMLLIFDEVHHLPAES--YV----QI---AQMSI---------AP 219 (237)
T ss_dssp --------CCSEEEEEHHHHHHTHHHH-----TTTCSEEEEECSSCCCTTT--HH----HH---HHTCC---------CS
T ss_pred --------cCCEEEEeHHHHHhhHHHh-----cccCCEEEEECCccCCChH--HH----HH---HHhcc---------CC
Confidence 4689999999887544321 2469999999999997644 33 22 22232 56
Q ss_pred CEEEEeccCCHH
Q 004098 332 PLMALTATATIQ 343 (774)
Q Consensus 332 ~il~lTAT~~~~ 343 (774)
++++||||+...
T Consensus 220 ~~l~LSATp~r~ 231 (237)
T 2fz4_A 220 FRLGLTATFERE 231 (237)
T ss_dssp EEEEEEESCC--
T ss_pred EEEEEecCCCCC
Confidence 799999999754
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.79 E-value=1.5e-19 Score=190.19 Aligned_cols=145 Identities=15% Similarity=0.170 Sum_probs=112.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhc----cCCeEEEEccchHHHHHHHHHHHhcCC----cEEEEc
Q 004098 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALL----TGKVVVVISPLISLMHDQCSKLSKHGV----TACFLG 244 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~----~~~~~LVvsPt~~L~~qq~~~l~~~gi----~~~~l~ 244 (774)
.|+++|.++++.++++++.++++|||+|||+++++++.. ..+++|||+|+++|+.|+.+++.+++. .+..+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~ 192 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe
Confidence 799999999999999899999999999999999887763 245999999999999999999999753 556666
Q ss_pred CCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhccccc
Q 004098 245 SGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNL 324 (774)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~ 324 (774)
++..... ......+|+|+||+++.+... ....++++|||||||++.. +.+..+ +
T Consensus 193 ~~~~~~~----~~~~~~~I~v~T~~~l~~~~~-----~~~~~~~~vIiDEaH~~~~------~~~~~i-----------l 246 (282)
T 1rif_A 193 GGASKDD----KYKNDAPVVVGTWQTVVKQPK-----EWFSQFGMMMNDECHLATG------KSISSI-----------I 246 (282)
T ss_dssp TTCSSTT----CCCTTCSEEEECHHHHTTSCG-----GGGGGEEEEEEETGGGCCH------HHHHHH-----------T
T ss_pred CCCcchh----hhccCCcEEEEchHHHHhhHH-----HHHhhCCEEEEECCccCCc------ccHHHH-----------H
Confidence 6654421 122457999999998764321 2346789999999999962 344444 3
Q ss_pred ccccCCCCEEEEeccCCHH
Q 004098 325 KSLKFDIPLMALTATATIQ 343 (774)
Q Consensus 325 ~~l~~~~~il~lTAT~~~~ 343 (774)
..++...++++||||++..
T Consensus 247 ~~~~~~~~~l~lSATp~~~ 265 (282)
T 1rif_A 247 SGLNNCMFKFGLSGSLRDG 265 (282)
T ss_dssp TTCTTCCEEEEECSSCCTT
T ss_pred HHhhcCCeEEEEeCCCCCc
Confidence 3344478999999999654
No 91
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.74 E-value=1.3e-18 Score=180.92 Aligned_cols=121 Identities=18% Similarity=0.229 Sum_probs=94.4
Q ss_pred ccCchhHhhhhccCCC-CCCcEEEEeCchHHHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHhcC-Cce-EEEEec
Q 004098 495 LLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGF-GVKAAAYNASLPKSQLRRVHTEFHEN-KLE-VVVATI 570 (774)
Q Consensus 495 ~~~k~~~ll~~L~~~~-~~~~~IIF~~sr~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~F~~g-~~~-vLVAT~ 570 (774)
...|...+.++|.+.. .+.++||||+++..++.|...|... |+.+..+||++++++|.+++++|++| +.+ +|++|+
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 3456666666665543 4569999999999999999999885 99999999999999999999999998 777 799999
Q ss_pred ccccCcccCCcceEEEeCCCCCHHHHHHHhhccccCCCcceEEEE
Q 004098 571 AFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGHLADCVLY 615 (774)
Q Consensus 571 a~~~GIDip~V~~VI~~d~p~s~~~y~Qr~GRaGR~G~~g~~il~ 615 (774)
++++|||++.+++||+||+|||+..|.|++||++|.|+.+.+.+|
T Consensus 174 ~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~ 218 (271)
T 1z5z_A 174 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 218 (271)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEE
T ss_pred hhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEE
Confidence 999999999999999999999999999999999999998877554
No 92
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.73 E-value=3.6e-17 Score=167.05 Aligned_cols=148 Identities=20% Similarity=0.225 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhhcc--------CCeEEEEccchHHHHHHHHHHHhc-C----Cc
Q 004098 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPALLT--------GKVVVVISPLISLMHDQCSKLSKH-G----VT 239 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal~~--------~~~~LVvsPt~~L~~qq~~~l~~~-g----i~ 239 (774)
.++++|.++++.+.+|+++++++|||+|||+++.++++.. ...+|+++|+++|+.|+.+.+... + ..
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 5799999999999999999999999999999888777531 348999999999999999888753 2 22
Q ss_pred EEEEcCCCChHHHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccccc-ccCCCCcHHHHHHHHHHHHH
Q 004098 240 ACFLGSGQPDNKVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCV-SKWGHDFRPDYRRLSVLREN 318 (774)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l-~~~g~~fr~~~~~l~~l~~~ 318 (774)
+..-.... ........+|+|+||++|.+++.. .+.++++|||||||++ .+.+ |.. ..+..+...
T Consensus 141 ~g~~~~~~------~~~~~~~~~Ivv~Tpg~l~~~l~~-----~l~~~~~lVlDEah~~~~~~~--~~~--~~l~~i~~~ 205 (235)
T 3llm_A 141 CGYSVRFE------SILPRPHASIMFCTVGVLLRKLEA-----GIRGISHVIVDEIHERDINTD--FLL--VVLRDVVQA 205 (235)
T ss_dssp EEEEETTE------EECCCSSSEEEEEEHHHHHHHHHH-----CCTTCCEEEECCTTSCCHHHH--HHH--HHHHHHHHH
T ss_pred EEEeechh------hccCCCCCeEEEECHHHHHHHHHh-----hhcCCcEEEEECCccCCcchH--HHH--HHHHHHHhh
Confidence 22211100 001124578999999999887652 4788999999999985 3322 321 223333333
Q ss_pred hcccccccccCCCCEEEEeccCCHHH
Q 004098 319 FGANNLKSLKFDIPLMALTATATIQV 344 (774)
Q Consensus 319 ~~~~~~~~l~~~~~il~lTAT~~~~~ 344 (774)
.+ +.+++++|||++.+.
T Consensus 206 ~~---------~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 206 YP---------EVRIVLMSATIDTSM 222 (235)
T ss_dssp CT---------TSEEEEEECSSCCHH
T ss_pred CC---------CCeEEEEecCCCHHH
Confidence 33 789999999998776
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.69 E-value=9.5e-16 Score=177.64 Aligned_cols=102 Identities=18% Similarity=0.176 Sum_probs=70.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec--ccccCcccCC--cceEEEe
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI--AFGMGIDKLN--VRRIIHY 587 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~--a~~~GIDip~--V~~VI~~ 587 (774)
++.++||++|....+.+++.|.. +... ..-+++..+|..++++|+ ++-.||++|. .|.+|||+|+ .+.||..
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~ 523 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILA 523 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEES
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEE
Confidence 56799999999999999998862 2222 445566678999999999 8889999985 9999999986 6789999
Q ss_pred CCCCC-------------------H----------HHHHHHhhccccCCCcceEEEEee
Q 004098 588 GWPQS-------------------L----------EAYYQEAGRAGRDGHLADCVLYAN 617 (774)
Q Consensus 588 d~p~s-------------------~----------~~y~Qr~GRaGR~G~~g~~il~~~ 617 (774)
++|.. . ....|.+||+=|.-..--++++++
T Consensus 524 ~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD 582 (620)
T 4a15_A 524 GLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILD 582 (620)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEEC
T ss_pred cCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEc
Confidence 98732 1 122599999999765444555554
No 94
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=98.87 E-value=1.1e-09 Score=99.86 Aligned_cols=80 Identities=13% Similarity=0.079 Sum_probs=62.9
Q ss_pred CCcccchHHHHHHHHHHHHHHhccCCccc-ceeeeccCcccccccCCCCccchhhhhhhhhhccccCCHHHHHHHHHHHH
Q 004098 682 PPEMKNLKEEANILMQVIAAYNEQSNSMD-DDDGIYSGIKKQKFMDRPNLKMFVSKIREQSQKYLATDLLWWRGLARIME 760 (774)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (774)
+++.+|+|++|+++|+||.+++++++... +|+|+|+.+++.+.. +..+++| |.+++.+..||+.++|+|+
T Consensus 8 ~~e~~D~T~~AqkiLs~V~r~~~rfG~~~iidvLrGs~~~ki~~~-~~~l~tf--------Gigk~~s~~~w~~lirqLi 78 (134)
T 3aaf_A 8 EDTSWDFGPQAFKLLSAVDILGEKFGIGLPILFLRGSNSQRLADQ-YRRHSLF--------GTGKDQTESWWKAFSRQLI 78 (134)
T ss_dssp ---CEECHHHHHHHHHHHHHTTTCSCTHHHHHHHTTCCCTTSCGG-GGGSTTT--------TTTTTSCHHHHHHHHHHHH
T ss_pred cccccCchHHHHHHHHHHHHHcCcccccchhhhhcCCcHHHHHHH-hCCCCcc--------CCCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999876666543 899999877654443 5677777 3346789999999999999
Q ss_pred HcCCceecCC
Q 004098 761 NKGYIREGDD 770 (774)
Q Consensus 761 ~~~~~~~~~~ 770 (774)
++|||.++.+
T Consensus 79 ~~G~L~~~~~ 88 (134)
T 3aaf_A 79 TEGFLVEVSR 88 (134)
T ss_dssp HTTSEEEEEC
T ss_pred HcCCceeecC
Confidence 9999998654
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.28 E-value=1.9e-06 Score=99.64 Aligned_cols=78 Identities=23% Similarity=0.242 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchH--HHHHHhhhc-----cCCeEEEEccchHHHHHHH
Q 004098 158 EVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKS--LCFQIPALL-----TGKVVVVISPLISLMHDQC 230 (774)
Q Consensus 158 ~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKT--l~~~lpal~-----~~~~~LVvsPt~~L~~qq~ 230 (774)
...+...|...|.-..-.+.|++|++.++.++++++.+++|+||| ++++++++. .+.++++++||..++.+..
T Consensus 134 ~~~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~ 213 (608)
T 1w36_D 134 EALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 (608)
T ss_dssp HHHHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHH
Confidence 345667777666433337899999999999999999999999999 677888775 3458999999999999887
Q ss_pred HHHHh
Q 004098 231 SKLSK 235 (774)
Q Consensus 231 ~~l~~ 235 (774)
+.+..
T Consensus 214 e~~~~ 218 (608)
T 1w36_D 214 ESLGK 218 (608)
T ss_dssp HHHTH
T ss_pred HHHHH
Confidence 77654
No 96
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.18 E-value=2.2e-06 Score=89.22 Aligned_cols=138 Identities=11% Similarity=-0.083 Sum_probs=91.8
Q ss_pred CcccccccccccCCC-CCCCCCCcc---chhhccccCchhHhhhhccCCC-CCCcEEEEeCchHHHHHHHHHHHhCCCce
Q 004098 465 VDDWDVACGEFYGHS-PHRDRDTDR---SFERTDLLNKPAERLSMLQEPL-EDGLTIIYVPTRKETLSIAKYLCGFGVKA 539 (774)
Q Consensus 465 ~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~k~~~ll~~L~~~~-~~~~~IIF~~sr~~~~~l~~~L~~~g~~~ 539 (774)
+++.+..|.+.+... +..+..... .......+.|...+-.+|.... .+.+++||+++.+..+.+.++|..+++++
T Consensus 73 i~qLRkicnHP~L~~d~~~p~~~~~~~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y 152 (328)
T 3hgt_A 73 CLNGSLVATHPYLLIDHYMPKSLITRDVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHI 152 (328)
T ss_dssp HHHHHHHHHCGGGTCCTTCCSCSCSTTHHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEE
T ss_pred HHHHHHHcCChhhhccccCCccccccchhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCce
Confidence 356777888877653 222222111 1122234444443333333322 34599999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCceEEEEecccccCcc-----cCCcceEEEeCCCCCHHHH-HHHhhccccCC
Q 004098 540 AAYNASLPKSQLRRVHTEFHENKLEVVVATIAFGMGID-----KLNVRRIIHYGWPQSLEAY-YQEAGRAGRDG 607 (774)
Q Consensus 540 ~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~~GID-----ip~V~~VI~~d~p~s~~~y-~Qr~GRaGR~G 607 (774)
..+.|.....++. -.+..+.+.+.|.+++-|+| ....+.||.||..|++..- +|.+-|+.|.|
T Consensus 153 ~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~ 221 (328)
T 3hgt_A 153 KRYDGHSIKSAAA-----ANDFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRER 221 (328)
T ss_dssp EESSSCCC------------CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---
T ss_pred EeCCCCchhhhhh-----cccCCceEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhc
Confidence 9999985543221 12455666666888888887 6788999999999999986 99999999984
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.78 E-value=2.3e-05 Score=91.45 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=59.9
Q ss_pred CCCCHHHHHHHHHHHcCCC-EEEEecCCCchHHHHH--H-hhhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcC
Q 004098 172 SSLKNFQKEALSAWLAHHD-CLVLAATGSGKSLCFQ--I-PALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGS 245 (774)
Q Consensus 172 ~~~r~~Q~~ai~~il~g~d-~lv~apTGsGKTl~~~--l-pal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~ 245 (774)
..+.+-|.+||..++..++ .||.+|.|+|||.+.. + -++..+.++||++||..-+.+.++.|...+.++.-++.
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG~ 265 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGH 265 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECSC
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEecc
Confidence 3688999999999997776 6889999999996522 2 22346889999999999999999999988877766543
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.73 E-value=6.9e-05 Score=86.91 Aligned_cols=74 Identities=20% Similarity=0.220 Sum_probs=60.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHH--Hhhhc--cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEc
Q 004098 171 HSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPALL--TGKVVVVISPLISLMHDQCSKLSKHGVTACFLG 244 (774)
Q Consensus 171 ~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~--lpal~--~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~ 244 (774)
+..+.+.|.+|+..++.+.-++|.+|+|+|||.+.. +-.+. .+.++||++||...+.+....+.+.|++++-+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~ 255 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLC 255 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECC
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEeec
Confidence 457899999999999987788999999999997532 32333 467999999999999999999988887765544
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00012 Score=86.77 Aligned_cols=74 Identities=22% Similarity=0.261 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHH--Hhhhc--cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEc
Q 004098 171 HSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPALL--TGKVVVVISPLISLMHDQCSKLSKHGVTACFLG 244 (774)
Q Consensus 171 ~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~--lpal~--~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~ 244 (774)
+..+.+.|.+|+..++.+.-++|.+|.|+|||.+.. +-.+. .+.++||++||...+.+..+.+.+.+++..-++
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~g 435 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLT 435 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCEEECC
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccEEeec
Confidence 456899999999999987778999999999996532 22222 578999999999999999999998887665543
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.50 E-value=0.00013 Score=86.43 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHH--HHhhhc--cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEc
Q 004098 171 HSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCF--QIPALL--TGKVVVVISPLISLMHDQCSKLSKHGVTACFLG 244 (774)
Q Consensus 171 ~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~--~lpal~--~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~ 244 (774)
...+.+.|.+|+..++.+.-++|.+|+|+|||.+. ++-.+. .+.++++++||...+.+..+.+.+.|++++-+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRlg 431 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLC 431 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCEEECC
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcceEeec
Confidence 44689999999999998777899999999999653 233333 467999999999999999999988887765554
No 101
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.23 E-value=0.00039 Score=79.48 Aligned_cols=61 Identities=18% Similarity=0.104 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCCchHHHH--HHhhh-ccCCeEEEEccchHHHHHHHHHH
Q 004098 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCF--QIPAL-LTGKVVVVISPLISLMHDQCSKL 233 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~--~lpal-~~~~~~LVvsPt~~L~~qq~~~l 233 (774)
.+++.|.+++..++.++.+++.+|.|+|||.+. ++-.+ ..+..+++++||...+....+.+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhh
Confidence 588999999999999899999999999999653 22222 35778999999988877655543
No 102
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.03 E-value=0.00047 Score=76.80 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=47.9
Q ss_pred hcCCCCCCHHHHHHHHHHHcC----C-CEEEEecCCCchHHHHH--Hhhhc-cCC-eEEEEccchHHHHHHHHHH
Q 004098 168 HFGHSSLKNFQKEALSAWLAH----H-DCLVLAATGSGKSLCFQ--IPALL-TGK-VVVVISPLISLMHDQCSKL 233 (774)
Q Consensus 168 ~~g~~~~r~~Q~~ai~~il~g----~-d~lv~apTGsGKTl~~~--lpal~-~~~-~~LVvsPt~~L~~qq~~~l 233 (774)
...|..+++-|++|+..++.. + .++|.++.|+|||.+.. +-.+. .+. .+++++||...+......+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 356889999999999987642 3 89999999999996532 22232 333 7999999987776555444
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.53 E-value=0.05 Score=58.44 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhh----c-cCCeEEEEccchHHHHHHHHHHHh
Q 004098 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL----L-TGKVVVVISPLISLMHDQCSKLSK 235 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal----~-~~~~~LVvsPt~~L~~qq~~~l~~ 235 (774)
.+.|+|...+..+-..+-+++..+-+.|||.+....++ . .+..+++++|++.-+....+.+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 68999999998875566789999999999976544333 2 356899999999988877766654
No 104
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.46 E-value=0.0043 Score=47.87 Aligned_cols=42 Identities=19% Similarity=0.427 Sum_probs=38.1
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHHHcCCcc
Q 004098 8 RDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVR 49 (774)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 49 (774)
+++.|..|++|||+-+++..|+..++-....|+++++++...
T Consensus 9 ~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 9 DEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQ 50 (63)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 378899999999999999999999998899999999998654
No 105
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.38 E-value=0.0063 Score=48.27 Aligned_cols=44 Identities=27% Similarity=0.474 Sum_probs=39.4
Q ss_pred CChHHHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHHHcCCcc
Q 004098 6 TSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVR 49 (774)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 49 (774)
...++.|..|++|||+-+++..|+...+-....|++++++|...
T Consensus 27 ~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 27 AASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSGP 70 (73)
T ss_dssp CCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSCS
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 33488999999999999999999999998899999999998654
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.06 E-value=0.038 Score=52.53 Aligned_cols=32 Identities=19% Similarity=0.111 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHH---------cCCCEEEEecCCCchHHHHH
Q 004098 175 KNFQKEALSAWL---------AHHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 175 r~~Q~~ai~~il---------~g~d~lv~apTGsGKTl~~~ 206 (774)
.+.|.+++..+. .|+.+++.+|+|+|||....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 345666666554 37889999999999997543
No 107
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.89 E-value=0.015 Score=46.30 Aligned_cols=42 Identities=19% Similarity=0.429 Sum_probs=37.6
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHHHcCCcc
Q 004098 8 RDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVR 49 (774)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 49 (774)
+.+.|..|++|||+-.++..|+..++-....|+++++++...
T Consensus 29 ~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 29 DQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGP 70 (73)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 367889999999999999999999998899999999987643
No 108
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.89 E-value=0.084 Score=48.09 Aligned_cols=22 Identities=9% Similarity=0.018 Sum_probs=18.0
Q ss_pred HcCCCEEEEecCCCchHHHHHH
Q 004098 186 LAHHDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 186 l~g~d~lv~apTGsGKTl~~~l 207 (774)
..+.++++.+|+|+|||..+..
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGG
T ss_pred CCCCcEEEECCCCccHHHHHHH
Confidence 3467899999999999987543
No 109
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.82 E-value=0.01 Score=43.27 Aligned_cols=39 Identities=21% Similarity=0.531 Sum_probs=35.9
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHHHcC
Q 004098 8 RDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNG 46 (774)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 46 (774)
.++.|..|++|||+-+++..|+..++-....|++++++|
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 367889999999999999999999998889999999986
No 110
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.71 E-value=0.14 Score=58.57 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHHHhhh----c-cCCeEEEEccchHHHHHHHHHHHh
Q 004098 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQIPAL----L-TGKVVVVISPLISLMHDQCSKLSK 235 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~lpal----~-~~~~~LVvsPt~~L~~qq~~~l~~ 235 (774)
.|.|+|...+..+-..+-+++..+-|.|||.+....++ . .+..+++++|+...+.+....+..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 58999999998875567899999999999976443222 2 245899999999998888777665
No 111
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=95.68 E-value=0.015 Score=41.12 Aligned_cols=39 Identities=21% Similarity=0.455 Sum_probs=35.4
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHHHcC
Q 004098 8 RDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNG 46 (774)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 46 (774)
+.+.|..|++|||+-+++..|+...+-....|+++++++
T Consensus 4 ~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 4 KSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 357899999999999999999999998899999999876
No 112
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.45 E-value=0.014 Score=43.66 Aligned_cols=42 Identities=17% Similarity=0.428 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHHHcCCc
Q 004098 7 SRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSV 48 (774)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 48 (774)
|..+-|+-|+.|||...|+..|++++|-....|++++++-.+
T Consensus 18 se~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 18 SERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSG 59 (63)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 346779999999999999999999999999999999987554
No 113
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.39 E-value=0.25 Score=49.13 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=32.0
Q ss_pred cCCCEEEEecCCCchHHHH-HHhh--hccCCeEEEEccchHHHHHHHHHHHhcCC
Q 004098 187 AHHDCLVLAATGSGKSLCF-QIPA--LLTGKVVVVISPLISLMHDQCSKLSKHGV 238 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~-~lpa--l~~~~~~LVvsPt~~L~~qq~~~l~~~gi 238 (774)
.|.-+++.+|+|+|||... ++.. +..+..+++++--. -..+..+.+..+|+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~~~g~ 75 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMAQFGW 75 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHHTTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHHHcCC
Confidence 3677899999999999753 3322 23466777776432 24455555555543
No 114
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.25 E-value=0.027 Score=40.62 Aligned_cols=40 Identities=25% Similarity=0.495 Sum_probs=35.2
Q ss_pred CChHHHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHHHcC
Q 004098 6 TSRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNG 46 (774)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 46 (774)
...++.|..|++|||+-.++..|+..+| ....|++++++.
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h 46 (47)
T 2ekk_A 7 GVNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTH 46 (47)
T ss_dssp SSCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence 3347889999999999999999999998 888899999863
No 115
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.05 E-value=0.062 Score=61.48 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=76.9
Q ss_pred CCCHHHHHHHHHHHc--CCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChH
Q 004098 173 SLKNFQKEALSAWLA--HHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN 250 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~--g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~ 250 (774)
.++.-|.+++..++. ..-.++.|+-|.|||.+..+.+-.-...++|.+|+.+=++...+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~~l~~~~~~--------------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTDVLAQFAGE--------------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCHHHHHHHGG---------------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHHHHHHHhhC---------------
Confidence 689999999999886 234688999999999765554433345679999997755432222111
Q ss_pred HHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCC
Q 004098 251 KVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFD 330 (774)
Q Consensus 251 ~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~ 330 (774)
.|-|..|+.+. ......+++|||||=.+. -|.+.++. . .
T Consensus 240 -----------~i~~~~Pd~~~---------~~~~~~dlliVDEAAaIp------~pll~~ll---~------------~ 278 (671)
T 2zpa_A 240 -----------KFRFIAPDALL---------ASDEQADWLVVDEAAAIP------APLLHQLV---S------------R 278 (671)
T ss_dssp -----------GCCBCCHHHHH---------HSCCCCSEEEEETGGGSC------HHHHHHHH---T------------T
T ss_pred -----------CeEEeCchhhh---------hCcccCCEEEEEchhcCC------HHHHHHHH---h------------h
Confidence 25667787432 123458999999999984 45555552 1 4
Q ss_pred CCEEEEeccCCH
Q 004098 331 IPLMALTATATI 342 (774)
Q Consensus 331 ~~il~lTAT~~~ 342 (774)
.+.++||-|...
T Consensus 279 ~~~v~~~tTv~G 290 (671)
T 2zpa_A 279 FPRTLLTTTVQG 290 (671)
T ss_dssp SSEEEEEEEBSS
T ss_pred CCeEEEEecCCc
Confidence 567899989743
No 116
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.03 E-value=0.054 Score=43.20 Aligned_cols=42 Identities=26% Similarity=0.414 Sum_probs=37.6
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhCC-ChhHHHHHHHcCCcc
Q 004098 8 RDEVIAKLIEMGFDDSDITEAVETVGP-SFNDAIEYILNGSVR 49 (774)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~ 49 (774)
..+.|..|++|||+..++..|+..++- ....|+++++++...
T Consensus 9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 9 DESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDD 51 (74)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 478899999999999999999999994 799999999997654
No 117
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.00 E-value=0.078 Score=48.80 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.5
Q ss_pred cCCCEEEEecCCCchHHHH
Q 004098 187 AHHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~ 205 (774)
.|+.+++.+|+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5888999999999999653
No 118
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.97 E-value=0.025 Score=61.62 Aligned_cols=84 Identities=12% Similarity=0.016 Sum_probs=53.3
Q ss_pred CEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEEEEChH
Q 004098 190 DCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCPE 269 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe 269 (774)
=.++.++.|+|||...+--+ .....+|++||++++.++.+.+.+.+.. .....-+.|-+
T Consensus 163 v~~I~G~aGsGKTt~I~~~~--~~~~~lVlTpT~~aa~~l~~kl~~~~~~-------------------~~~~~~V~T~d 221 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRV--NFEEDLILVPGRQAAEMIRRRANASGII-------------------VATKDNVRTVD 221 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHC--CTTTCEEEESCHHHHHHHHHHHTTTSCC-------------------CCCTTTEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHh--ccCCeEEEeCCHHHHHHHHHHhhhcCcc-------------------ccccceEEEeH
Confidence 36789999999998654322 2356799999999999999988654321 00122356666
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEeccccc
Q 004098 270 TVIRLIKPLQRLAESRGIALFAIDEVHCV 298 (774)
Q Consensus 270 ~l~~ll~~~~~~~~~~~i~~iVIDEaH~l 298 (774)
.++ +. .........+++|||||-.+
T Consensus 222 sfL--~~--~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 222 SFL--MN--YGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp HHH--HT--TTSSCCCCCSEEEEETGGGS
T ss_pred Hhh--cC--CCCCCCCcCCEEEEeCcccC
Confidence 432 11 00000123799999999865
No 119
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.93 E-value=0.24 Score=52.07 Aligned_cols=139 Identities=17% Similarity=0.176 Sum_probs=69.2
Q ss_pred CCCEEEEecCCCchHHHHHHhh---hccCCeEEEEccchHHHHHHHHHHHh--cCCcEEEEc-CCCChHHHHH-----HH
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSK--HGVTACFLG-SGQPDNKVEQ-----KA 256 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~L~~qq~~~l~~--~gi~~~~l~-~~~~~~~~~~-----~~ 256 (774)
|.=+++.+++|.|||...+-.+ ...+..++|++.--+ ..|....+.. .++....+. +.....+... ..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms-~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~ 124 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS-AEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCFDH 124 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC-HHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC-HHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4557888899999996433222 236778888865322 2333333322 122221111 2222211110 11
Q ss_pred HcCCceEEE-EChH-HHHHHHHHHHHHHHhc-CccEEEEecccccccCC------CCcHHHHHHHHHHHHHhcccccccc
Q 004098 257 LRGMYSIIY-VCPE-TVIRLIKPLQRLAESR-GIALFAIDEVHCVSKWG------HDFRPDYRRLSVLRENFGANNLKSL 327 (774)
Q Consensus 257 ~~~~~~Ilv-~TPe-~l~~ll~~~~~~~~~~-~i~~iVIDEaH~l~~~g------~~fr~~~~~l~~l~~~~~~~~~~~l 327 (774)
+.. ..+.| -+|. .+..+......+.... .+++||||-.+.|...+ .......+.|..+...+
T Consensus 125 l~~-~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel-------- 195 (338)
T 4a1f_A 125 LSQ-KKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLAREL-------- 195 (338)
T ss_dssp HHH-SCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHH--------
T ss_pred Hhc-CCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHc--------
Confidence 111 23443 3443 2323333334444444 79999999999885311 12334445555554444
Q ss_pred cCCCCEEEEec
Q 004098 328 KFDIPLMALTA 338 (774)
Q Consensus 328 ~~~~~il~lTA 338 (774)
++|++++|-
T Consensus 196 --~vpVi~lsQ 204 (338)
T 4a1f_A 196 --EIPIIALVQ 204 (338)
T ss_dssp --TSCEEEEEE
T ss_pred --CCeEEEEEe
Confidence 688888775
No 120
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.087 Score=55.01 Aligned_cols=18 Identities=17% Similarity=-0.007 Sum_probs=15.8
Q ss_pred CCCEEEEecCCCchHHHH
Q 004098 188 HHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~ 205 (774)
+.++++.+|+|+|||.+.
T Consensus 45 ~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCEEEEECCCSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999864
No 121
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.54 E-value=0.061 Score=39.04 Aligned_cols=43 Identities=28% Similarity=0.453 Sum_probs=36.2
Q ss_pred CCChHHHHHHHHHcCCCchHHHHHHHHhC-CChhHHHHHHHcCCc
Q 004098 5 GTSRDEVIAKLIEMGFDDSDITEAVETVG-PSFNDAIEYILNGSV 48 (774)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~ 48 (774)
++. -+-++.|+||||+-.-+..|++++| .....|++++..=+.
T Consensus 7 ~vn-~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~~ 50 (54)
T 2cos_A 7 GVN-RQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMSG 50 (54)
T ss_dssp SCC-HHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHSC
T ss_pred hhH-HHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 455 4558999999999999999999999 689999999976443
No 122
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.53 E-value=0.24 Score=53.34 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=22.1
Q ss_pred CCCEEEEecCCCchHHHHHHhhhccCCeEEEE
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~~~~~~LVv 219 (774)
.+.+|+.+|+|+|||..+...+-..+...+.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 47899999999999987654444334333333
No 123
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.48 E-value=0.17 Score=52.98 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=21.1
Q ss_pred CCCEEEEecCCCchHHHHHHhhhccCCeEEEE
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~~~~~~LVv 219 (774)
.+.+++.+|+|+|||+.+...+-..+...+.+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 35799999999999987654443333333333
No 124
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=94.44 E-value=0.056 Score=39.87 Aligned_cols=38 Identities=29% Similarity=0.464 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCC-CchHHHHHHHHhCCChhHHHHHHHcC
Q 004098 9 DEVIAKLIEMGF-DDSDITEAVETVGPSFNDAIEYILNG 46 (774)
Q Consensus 9 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g 46 (774)
+.-|..|++||| +-.++..|+..++=....|+++++++
T Consensus 13 ~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 13 QQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 678999999999 88889999999988899999999875
No 125
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.35 E-value=0.27 Score=52.46 Aligned_cols=89 Identities=17% Similarity=0.184 Sum_probs=50.9
Q ss_pred CCCEEEEecCCCchHHHHH-Hhh--hccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEE
Q 004098 188 HHDCLVLAATGSGKSLCFQ-IPA--LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~-lpa--l~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Il 264 (774)
|+-+++.+|+|+|||...+ +.+ ...+..++++..-.++- +.. +.++|+.. -+++
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~-~~~--a~~~g~d~--------------------~~l~ 130 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD-PVY--ARALGVNT--------------------DELL 130 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-HHH--HHHTTCCG--------------------GGCE
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh-HHH--HHHcCCCH--------------------HHce
Confidence 4668889999999996433 221 22456777776543321 111 23333320 1344
Q ss_pred EEChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 265 v~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
|..|..+..++..+..+.....+++||||....+.
T Consensus 131 i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 131 VSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp EECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred eecCCcHHHHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 54444444444444444445679999999999886
No 126
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=94.34 E-value=0.068 Score=38.24 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCC-chHHHHHHHHhCCChhHHHHHHHcC
Q 004098 9 DEVIAKLIEMGFD-DSDITEAVETVGPSFNDAIEYILNG 46 (774)
Q Consensus 9 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g 46 (774)
+.-|+.|++|||. -.++..|+..++=....|++++++|
T Consensus 8 ~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 5678999999995 4557999999998899999999875
No 127
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.30 E-value=0.47 Score=44.44 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=15.3
Q ss_pred CCCEEEEecCCCchHHHH
Q 004098 188 HHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~ 205 (774)
.+.+++.+|+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 457999999999999754
No 128
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=94.29 E-value=0.059 Score=39.91 Aligned_cols=39 Identities=28% Similarity=0.447 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCC-CchHHHHHHHHhCCChhHHHHHHHcCC
Q 004098 9 DEVIAKLIEMGF-DDSDITEAVETVGPSFNDAIEYILNGS 47 (774)
Q Consensus 9 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~ 47 (774)
+.-|+.|++||| +-+++..|+..++=....|+++++++.
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 566899999999 888899999999988999999999864
No 129
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.27 E-value=0.28 Score=51.46 Aligned_cols=103 Identities=22% Similarity=0.266 Sum_probs=60.3
Q ss_pred HHHHHHc-----CCCEEEEecCCCchHHHH-HHhhh--cc------CCeEEEEccchHH-HHHHHHHHHhcCCcEEEEcC
Q 004098 181 ALSAWLA-----HHDCLVLAATGSGKSLCF-QIPAL--LT------GKVVVVISPLISL-MHDQCSKLSKHGVTACFLGS 245 (774)
Q Consensus 181 ai~~il~-----g~d~lv~apTGsGKTl~~-~lpal--~~------~~~~LVvsPt~~L-~~qq~~~l~~~gi~~~~l~~ 245 (774)
.+..++. |.-+++.+|+|+|||... ++..- .. ++.+++++--..+ ..+..+.+.++|+.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~------ 168 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLD------ 168 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCC------
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCC------
Confidence 4556663 567899999999999643 33322 22 5688888765433 33444445555542
Q ss_pred CCChHHHHHHHHcCCceEEEEC---hHHHHHHHHHHHHHHHh-cCccEEEEecccccc
Q 004098 246 GQPDNKVEQKALRGMYSIIYVC---PETVIRLIKPLQRLAES-RGIALFAIDEVHCVS 299 (774)
Q Consensus 246 ~~~~~~~~~~~~~~~~~Ilv~T---Pe~l~~ll~~~~~~~~~-~~i~~iVIDEaH~l~ 299 (774)
... +.. ++.|.. .+.+..++..+...+.. ..+++||||+...+.
T Consensus 169 ---~~~----~~~---~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 169 ---IDN----VMN---NIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp ---HHH----HHH---TEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred ---HHH----Hhc---cEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 111 111 344443 44444445544555555 679999999999874
No 130
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.25 E-value=0.49 Score=46.79 Aligned_cols=97 Identities=12% Similarity=0.155 Sum_probs=53.1
Q ss_pred CCCEEEEecCCCchHHHHHHhhh---c------cCCeEEEEccchHH-HHHHHHHHHhcCCcEEEEcCCCChHHHHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQIPAL---L------TGKVVVVISPLISL-MHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL 257 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal---~------~~~~~LVvsPt~~L-~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~ 257 (774)
|.-+++.+|+|+|||......+. . .+..++++.-...+ ..+....+..+++. ... ..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~---------~~~----~~ 90 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLS---------GSD----VL 90 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCC---------HHH----HH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCC---------HHH----Hh
Confidence 56788999999999975443332 2 14567776543221 12222333444431 111 11
Q ss_pred cCCceEEEE---ChHHHHHHHHHHHHHHHhcCccEEEEeccccccc
Q 004098 258 RGMYSIIYV---CPETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (774)
Q Consensus 258 ~~~~~Ilv~---TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~ 300 (774)
. ++.+. +++.+...+..+...+...+.++|||||...+..
T Consensus 91 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 91 D---NVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp H---TEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred h---CeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 1 23332 3444444444444555556899999999998864
No 131
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.22 E-value=0.045 Score=42.32 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhCC-ChhHHHHHHHcCCc
Q 004098 9 DEVIAKLIEMGFDDSDITEAVETVGP-SFNDAIEYILNGSV 48 (774)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~ 48 (774)
.+.|+.|++|||+-.++..|+..++- ....|+++++++..
T Consensus 20 e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 20 GSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 46789999999999999999999995 89999999998754
No 132
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.20 E-value=0.079 Score=42.00 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCC-CchHHHHHHHHhCCChhHHHHHHHcCCcc
Q 004098 9 DEVIAKLIEMGF-DDSDITEAVETVGPSFNDAIEYILNGSVR 49 (774)
Q Consensus 9 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 49 (774)
+.-|+.|+|||| +..++..|+..++=....|++++++|...
T Consensus 30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~ 71 (74)
T 1vej_A 30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGP 71 (74)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 567899999999 56677999999998899999999998543
No 133
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.13 E-value=0.32 Score=47.02 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.4
Q ss_pred CCEEEEecCCCchHHHH
Q 004098 189 HDCLVLAATGSGKSLCF 205 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~ 205 (774)
..+++.+|+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 36999999999999753
No 134
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.13 E-value=0.29 Score=51.77 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=60.4
Q ss_pred HHHHHHc-----CCCEEEEecCCCchHHHHH-Hhhh--c------cCCeEEEEccchHH-HHHHHHHHHhcCCcEEEEcC
Q 004098 181 ALSAWLA-----HHDCLVLAATGSGKSLCFQ-IPAL--L------TGKVVVVISPLISL-MHDQCSKLSKHGVTACFLGS 245 (774)
Q Consensus 181 ai~~il~-----g~d~lv~apTGsGKTl~~~-lpal--~------~~~~~LVvsPt~~L-~~qq~~~l~~~gi~~~~l~~ 245 (774)
.+..++. |.-+++.+|+|+|||...+ +..- . .++.++++.--..+ ..+....+.++|+.
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~------ 183 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVD------ 183 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCC------
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCC------
Confidence 4566663 4668899999999996543 3321 2 36688888765432 23333444455542
Q ss_pred CCChHHHHHHHHcCCceEEEE---ChHHHHHHHHHHHHHHHh--cCccEEEEecccccc
Q 004098 246 GQPDNKVEQKALRGMYSIIYV---CPETVIRLIKPLQRLAES--RGIALFAIDEVHCVS 299 (774)
Q Consensus 246 ~~~~~~~~~~~~~~~~~Ilv~---TPe~l~~ll~~~~~~~~~--~~i~~iVIDEaH~l~ 299 (774)
.. ..+. ++.|. +.+.+..++..+...+.. ..+++||||+...+.
T Consensus 184 ---~~----~~l~---~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 184 ---HD----AVLD---NVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF 232 (343)
T ss_dssp ---HH----HHHH---TEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGH
T ss_pred ---HH----HHHh---ceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHH
Confidence 11 1122 24443 345555555544555555 789999999999875
No 135
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.02 E-value=0.088 Score=42.66 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=35.9
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHHHcC
Q 004098 8 RDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNG 46 (774)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 46 (774)
.++.|+.|++|||+-.++..|+..++=....|++++++.
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 368899999999999999999999998889999999984
No 136
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.99 E-value=0.044 Score=42.30 Aligned_cols=41 Identities=17% Similarity=0.453 Sum_probs=37.2
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHHHcCCc
Q 004098 8 RDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSV 48 (774)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 48 (774)
.++.+..|++|||+..++..|+..++-....|+++++++..
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~ 49 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHID 49 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 47889999999999999999999999888999999998654
No 137
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.97 E-value=0.09 Score=50.32 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=25.6
Q ss_pred CCCEEEEecCCCchHHHHH-Hhh--hccCCeEEEEccch
Q 004098 188 HHDCLVLAATGSGKSLCFQ-IPA--LLTGKVVVVISPLI 223 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~-lpa--l~~~~~~LVvsPt~ 223 (774)
|+=.++.+|+|+|||...+ +.. ...+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 5557889999999998753 222 23577899998874
No 138
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.80 E-value=0.54 Score=49.81 Aligned_cols=89 Identities=20% Similarity=0.208 Sum_probs=49.6
Q ss_pred CCCEEEEecCCCchHHHHH-Hhh--hccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEE
Q 004098 188 HHDCLVLAATGSGKSLCFQ-IPA--LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~-lpa--l~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Il 264 (774)
|+-+++.+|.|+|||...+ +.. ...++.++++.--..+-. . ...++|+.. -++.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~-~--~a~~lG~~~--------------------~~l~ 117 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDP-E--YAKKLGVDT--------------------DSLL 117 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH-H--HHHHTTCCG--------------------GGCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCH-H--HHHHcCCCH--------------------HHeE
Confidence 5678999999999996533 322 234667777764322211 1 123334320 1233
Q ss_pred EEChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 265 v~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
+..|..+..++.....+.....+++|||||...+.
T Consensus 118 i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 118 VSQPDTGEQALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp EECCSSHHHHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred EecCCCHHHHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 44443333333333334444568999999999886
No 139
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.80 E-value=0.18 Score=52.85 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=16.0
Q ss_pred CCCEEEEecCCCchHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~ 206 (774)
+..+++.+|+|+|||....
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3589999999999997654
No 140
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.77 E-value=0.69 Score=50.76 Aligned_cols=117 Identities=18% Similarity=0.179 Sum_probs=57.2
Q ss_pred HHHHHHc----CCCEEEEecCCCchHHHHH-Hh--hhc-cCCeEEEEccchHHHHHHHHHHH--hcCCcEEEE-cCCCCh
Q 004098 181 ALSAWLA----HHDCLVLAATGSGKSLCFQ-IP--ALL-TGKVVVVISPLISLMHDQCSKLS--KHGVTACFL-GSGQPD 249 (774)
Q Consensus 181 ai~~il~----g~d~lv~apTGsGKTl~~~-lp--al~-~~~~~LVvsPt~~L~~qq~~~l~--~~gi~~~~l-~~~~~~ 249 (774)
.+..++. |.=+++.+++|+|||...+ +. +.. .+..+++++.--+ ..|....+. ..++....+ .+....
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~~~~~~i~~~~l~~g~l~~ 267 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMMCSEARIDMNRVRLGQLTD 267 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHHHHHTTCCTTTCCGGGCCH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhCCCCCH
Confidence 3555553 4557889999999996433 22 122 3557888765322 233333332 123322111 111222
Q ss_pred HHHHHH------HHcCCceEEEE-ChH-HHHHHHHHHHHHHHhcCccEEEEeccccccc
Q 004098 250 NKVEQK------ALRGMYSIIYV-CPE-TVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (774)
Q Consensus 250 ~~~~~~------~~~~~~~Ilv~-TPe-~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~ 300 (774)
.. +.. .+.. ..+.+. +|. .+..+...+..+....++++||||..+.+..
T Consensus 268 ~~-~~~~~~a~~~l~~-~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 268 RD-FSRLVDVASRLSE-APIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HH-HHHHHHHHHHHHT-SCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBC
T ss_pred HH-HHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCC
Confidence 11 111 1122 244443 221 2223333334444456799999999999864
No 141
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.77 E-value=0.34 Score=50.09 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=15.4
Q ss_pred CCEEEEecCCCchHHHHH
Q 004098 189 HDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~ 206 (774)
.++++.+|+|+|||....
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999998653
No 142
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.76 E-value=0.34 Score=51.44 Aligned_cols=89 Identities=19% Similarity=0.172 Sum_probs=50.6
Q ss_pred CCCEEEEecCCCchHHHHHHhh---hccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEE
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Il 264 (774)
|+-+++.+++|+|||...+-.+ ...+..++++..-.++-... ..++|+.. -++.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~---a~~~g~~~--------------------~~l~ 119 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDI--------------------DNLL 119 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH---HHHTTCCG--------------------GGCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH---HHHcCCCh--------------------hhee
Confidence 5678999999999996543222 23456777776533222111 33444321 0233
Q ss_pred EEChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 265 v~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
+..|.....++..+..+.....+++||||....+.
T Consensus 120 i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 120 CSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCC
T ss_pred eeCCCCHHHHHHHHHHHHhccCCCEEEEcCHHHhc
Confidence 44443333333333334445679999999999875
No 143
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.72 E-value=0.17 Score=53.36 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHH----cCC---CEEEEecCCCchHHHHHH
Q 004098 174 LKNFQKEALSAWL----AHH---DCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 174 ~r~~Q~~ai~~il----~g~---d~lv~apTGsGKTl~~~l 207 (774)
+.|+|.+++..+. +|+ -+++.+|.|+|||.....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 3566776665544 333 389999999999976543
No 144
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.63 E-value=0.22 Score=45.27 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=18.3
Q ss_pred cCCCEEEEecCCCchHHHHHHh
Q 004098 187 AHHDCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~lp 208 (774)
.+.++++.+|+|+|||..+...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHH
Confidence 4678999999999999876543
No 145
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.61 E-value=0.68 Score=50.95 Aligned_cols=118 Identities=19% Similarity=0.155 Sum_probs=57.6
Q ss_pred HHHHHHc----CCCEEEEecCCCchHHHHHHhhh---c-cCCeEEEEccchHHHHHHHHHHH--hcCCcEEEEcCCCChH
Q 004098 181 ALSAWLA----HHDCLVLAATGSGKSLCFQIPAL---L-TGKVVVVISPLISLMHDQCSKLS--KHGVTACFLGSGQPDN 250 (774)
Q Consensus 181 ai~~il~----g~d~lv~apTGsGKTl~~~lpal---~-~~~~~LVvsPt~~L~~qq~~~l~--~~gi~~~~l~~~~~~~ 250 (774)
.+..++. |.=+++.+++|+|||...+-.+. . .+..+++++.-.+ ..+....+. ..++....+..+....
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s-~~~l~~r~~~~~~~~~~~~l~~g~l~~ 270 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS-AQQLVMRMLCAEGNINAQNLRTGKLTP 270 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC-HHHHHHHHHHHHHTCCHHHHHTSCCCH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhcCCCCH
Confidence 4555553 45678889999999965432221 2 3457888764322 133333332 2333321122222111
Q ss_pred HHHHH------HHcCCceEEEEChH--HHHHHHHHHHHHHHhcCccEEEEeccccccc
Q 004098 251 KVEQK------ALRGMYSIIYVCPE--TVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (774)
Q Consensus 251 ~~~~~------~~~~~~~Ilv~TPe--~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~ 300 (774)
..+.. .+. ...+.+..+. .+..+......+....++++||||+.+.+..
T Consensus 271 ~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 271 EDWGKLTMAMGSLS-NAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHHHHHHHHHH-SSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 11111 111 2245543221 2222223233344445799999999999874
No 146
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.60 E-value=0.094 Score=38.94 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCCchH-HHHHHHHhCCChhHHHHHHHcCCcc
Q 004098 9 DEVIAKLIEMGFDDSD-ITEAVETVGPSFNDAIEYILNGSVR 49 (774)
Q Consensus 9 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~ 49 (774)
+.-|+.|++|||.-.+ +..|+..++=....|+++++++...
T Consensus 10 ~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 10 QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 6678999999996655 6999999999899999999987543
No 147
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.59 E-value=0.099 Score=42.62 Aligned_cols=42 Identities=24% Similarity=0.430 Sum_probs=38.0
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHHHcCCcc
Q 004098 8 RDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVR 49 (774)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 49 (774)
..+.|..|++|||.-.++..|+..++-....|+++++++...
T Consensus 29 ~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d 70 (83)
T 2dai_A 29 DEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAED 70 (83)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 478899999999999999999999988899999999987653
No 148
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=93.56 E-value=0.1 Score=36.02 Aligned_cols=37 Identities=27% Similarity=0.538 Sum_probs=32.1
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHHH
Q 004098 8 RDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYIL 44 (774)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (774)
.++.|..|++|||+-+++..|+..++-....|+++++
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 4678999999999999999999999877788887763
No 149
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.53 E-value=0.19 Score=51.33 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=17.7
Q ss_pred CCCEEEEecCCCchHHHHHHhh
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa 209 (774)
.+.+++.+|+|+|||......+
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 5679999999999998755443
No 150
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.48 E-value=1.2 Score=41.69 Aligned_cols=18 Identities=17% Similarity=0.420 Sum_probs=15.3
Q ss_pred CCCEEEEecCCCchHHHH
Q 004098 188 HHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~ 205 (774)
.+.+++.+|+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 367999999999999764
No 151
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.45 E-value=0.13 Score=39.71 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhCC-ChhHHHHHHHcCCcc
Q 004098 9 DEVIAKLIEMGFDDSDITEAVETVGP-SFNDAIEYILNGSVR 49 (774)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~ 49 (774)
...+..|++|||+..++..|+..+|- ....|+++++.+...
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 10 PSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCND 51 (64)
T ss_dssp CSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 45789999999999999999999985 899999999987653
No 152
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=93.38 E-value=0.089 Score=60.98 Aligned_cols=63 Identities=25% Similarity=0.342 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHH--Hhhhc-c----CCeEEEEccchHHHHHHHHHHHhc
Q 004098 172 SSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPALL-T----GKVVVVISPLISLMHDQCSKLSKH 236 (774)
Q Consensus 172 ~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~--lpal~-~----~~~~LVvsPt~~L~~qq~~~l~~~ 236 (774)
..+++-|.+|+.. ....++|.|+.|||||.+.. +..+. . ...+|+|++|+..+.+..+.+.+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 3689999999973 35689999999999997533 22222 2 358999999999999998888763
No 153
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.30 E-value=0.084 Score=52.24 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=15.7
Q ss_pred CCCEEEEecCCCchHHHH
Q 004098 188 HHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~ 205 (774)
++.+++.+|+|+|||...
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999754
No 154
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.29 E-value=0.2 Score=50.95 Aligned_cols=21 Identities=24% Similarity=0.113 Sum_probs=16.8
Q ss_pred CCEEEEecCCCchHHHHHHhh
Q 004098 189 HDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa 209 (774)
..+++.+|+|+|||..+...+
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 479999999999998764433
No 155
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.23 E-value=0.11 Score=51.25 Aligned_cols=36 Identities=14% Similarity=0.028 Sum_probs=25.3
Q ss_pred CCCEEEEecCCCchHHHHHHhh---hccCCeEEEEccch
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLI 223 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~ 223 (774)
|.=.++.+|+|+|||...+--+ ...+.+++++.|..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 4557788999999997543222 23567888888765
No 156
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.22 E-value=0.37 Score=51.46 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=14.7
Q ss_pred CEEEEecCCCchHHHHH
Q 004098 190 DCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~ 206 (774)
.+++.+|+|+|||....
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999997643
No 157
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.11 E-value=1.9 Score=46.97 Aligned_cols=122 Identities=12% Similarity=0.092 Sum_probs=64.9
Q ss_pred CEEEEecCCCchHHHHH-Hhh-h-ccCCeEEEEc--cchHHHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHcCCceE
Q 004098 190 DCLVLAATGSGKSLCFQ-IPA-L-LTGKVVVVIS--PLISLMHDQCSKLSK-HGVTACFLGSGQPDNKVEQKALRGMYSI 263 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~-lpa-l-~~~~~~LVvs--Pt~~L~~qq~~~l~~-~gi~~~~l~~~~~~~~~~~~~~~~~~~I 263 (774)
-+++++++|+|||.+.. |.. + ..+.+++++. |.++-+.+|...+.. .++++.....+..
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~d--------------- 166 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKD--------------- 166 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCC---------------
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCC---------------
Confidence 46778899999997643 222 2 2455666665 556656666665554 4665443322221
Q ss_pred EEEChHHHH-HHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCH
Q 004098 264 IYVCPETVI-RLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATI 342 (774)
Q Consensus 264 lv~TPe~l~-~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~ 342 (774)
|..+. +.+. .......+++|||.+=+... -...+..+..+..... ++.-++.+.||...
T Consensus 167 ----p~~i~~~al~----~a~~~~~DvVIIDTaGrl~~----d~~lm~el~~i~~~~~--------pd~vlLVvDA~~gq 226 (443)
T 3dm5_A 167 ----AIKLAKEGVD----YFKSKGVDIIIVDTAGRHKE----DKALIEEMKQISNVIH--------PHEVILVIDGTIGQ 226 (443)
T ss_dssp ----HHHHHHHHHH----HHHHTTCSEEEEECCCCSSC----CHHHHHHHHHHHHHHC--------CSEEEEEEEGGGGG
T ss_pred ----HHHHHHHHHH----HHHhCCCCEEEEECCCcccc----hHHHHHHHHHHHHhhc--------CceEEEEEeCCCch
Confidence 22211 1111 22234578999998854421 2334444444433332 24457778888765
Q ss_pred HHHH
Q 004098 343 QVRE 346 (774)
Q Consensus 343 ~~~~ 346 (774)
....
T Consensus 227 ~a~~ 230 (443)
T 3dm5_A 227 QAYN 230 (443)
T ss_dssp GHHH
T ss_pred hHHH
Confidence 5444
No 158
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.10 E-value=0.16 Score=49.47 Aligned_cols=34 Identities=26% Similarity=0.222 Sum_probs=23.7
Q ss_pred CCCEEEEecCCCchHHHHHHhhhccCCeEEEEcc
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsP 221 (774)
|.-+++.+|+|+|||......+...+..++++.-
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 5668899999999996543333355667777753
No 159
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.08 E-value=0.23 Score=53.04 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=16.0
Q ss_pred CCCEEEEecCCCchHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~ 206 (774)
+..+++.+|+|+|||....
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 5689999999999997643
No 160
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.07 E-value=0.23 Score=47.79 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=25.5
Q ss_pred CCCEEEEecCCCchHHHHHHhhh---ccCCeEEEEccch
Q 004098 188 HHDCLVLAATGSGKSLCFQIPAL---LTGKVVVVISPLI 223 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal---~~~~~~LVvsPt~ 223 (774)
|+=.++.+|+|+|||...+--+. ..+.+++++-|.+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 44467899999999976543332 3678899998874
No 161
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.90 E-value=0.21 Score=58.90 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=65.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc-cccCcccCCcceEEE
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-FGMGIDKLNVRRIIH 586 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a-~~~GIDip~V~~VI~ 586 (774)
+.+++|.++|+.-+.++++.+.+ .++++..+||+++..+|...++.+.+|+.+|+|+|.. +...+++.++++||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 56899999999999888887765 3799999999999999999999999999999999975 445678888998884
Q ss_pred e
Q 004098 587 Y 587 (774)
Q Consensus 587 ~ 587 (774)
=
T Consensus 497 D 497 (780)
T 1gm5_A 497 D 497 (780)
T ss_dssp E
T ss_pred c
Confidence 3
No 162
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.89 E-value=0.25 Score=52.63 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=21.8
Q ss_pred CCCEEEEecCCCchHHHHHHhhhccCCeEEEE
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~~~~~~LVv 219 (774)
.+.+++.+|+|+|||..+...+-..+...+.+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 46799999999999987654443334333333
No 163
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=92.83 E-value=0.15 Score=38.37 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCC-chHHHHHHHHhCCChhHHHHHHHcCC
Q 004098 9 DEVIAKLIEMGFD-DSDITEAVETVGPSFNDAIEYILNGS 47 (774)
Q Consensus 9 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~ 47 (774)
+.-|+.|++|||. -+++..|+..++=....|++++++|.
T Consensus 18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 4578999999995 55679999999988999999999874
No 164
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.81 E-value=1 Score=46.78 Aligned_cols=111 Identities=13% Similarity=0.028 Sum_probs=53.7
Q ss_pred CCCEEEEecCCCchHHHHH-Hh--hhccCCeEEEEccchHHHHHHHHHHHh--cCCcEEEEcCC------CChHHHH--H
Q 004098 188 HHDCLVLAATGSGKSLCFQ-IP--ALLTGKVVVVISPLISLMHDQCSKLSK--HGVTACFLGSG------QPDNKVE--Q 254 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~-lp--al~~~~~~LVvsPt~~L~~qq~~~l~~--~gi~~~~l~~~------~~~~~~~--~ 254 (774)
|.=+++.+++|+|||...+ +. +...+..+++++-- .-..|....+.. .++....+..+ ....... .
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~ 146 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAI 146 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHH
Confidence 5568889999999995432 22 22345678888643 223333333332 13321111111 1111100 1
Q ss_pred HHHcCCceEEEEC-hH-HHHHHHHHHHHHHHhcCcc--EEEEeccccccc
Q 004098 255 KALRGMYSIIYVC-PE-TVIRLIKPLQRLAESRGIA--LFAIDEVHCVSK 300 (774)
Q Consensus 255 ~~~~~~~~Ilv~T-Pe-~l~~ll~~~~~~~~~~~i~--~iVIDEaH~l~~ 300 (774)
..+.. ..|.+.. |. .+..+...+..+.....++ +||||-...+..
T Consensus 147 ~~l~~-~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~ 195 (315)
T 3bh0_A 147 GEISN-SNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEP 195 (315)
T ss_dssp HHHHT-SCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBC
T ss_pred HHHhC-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCC
Confidence 11112 2454432 21 2223333334444445789 999999998853
No 165
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.80 E-value=0.056 Score=41.80 Aligned_cols=41 Identities=22% Similarity=0.431 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhC-CChhHHHHHHHcCCcc
Q 004098 9 DEVIAKLIEMGFDDSDITEAVETVG-PSFNDAIEYILNGSVR 49 (774)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~ 49 (774)
.+.|..|++|||+-.++..|+..+| .....|+++++++...
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 10 LTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp CCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence 5678999999999999999999996 7899999999987543
No 166
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.74 E-value=0.26 Score=53.49 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=64.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecccc----cCcccCCcce
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCG---FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAFG----MGIDKLNVRR 583 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~~----~GIDip~V~~ 583 (774)
.+.++||.++++.-+.++++.+.. .++++..+||+.+..++....+.+..|+.+|+|+|.-.- .-++..++++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 456899999999999999999988 588999999999999999999999999999999996321 1155567888
Q ss_pred EEE
Q 004098 584 IIH 586 (774)
Q Consensus 584 VI~ 586 (774)
||.
T Consensus 143 iVi 145 (414)
T 3oiy_A 143 VFV 145 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 873
No 167
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.73 E-value=0.31 Score=51.90 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=16.0
Q ss_pred CCCEEEEecCCCchHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~ 206 (774)
++.+++.+|+|+|||....
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5689999999999997643
No 168
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.56 E-value=0.31 Score=51.83 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=21.2
Q ss_pred CCCEEEEecCCCchHHHHHHhhhccCCeEEEE
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~~~~~~LVv 219 (774)
.+.+|+.+|+|+|||+.+...+-..+...+.+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 35799999999999987654443333333333
No 169
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.56 E-value=0.76 Score=44.08 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=15.5
Q ss_pred CCEEEEecCCCchHHHHH
Q 004098 189 HDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~ 206 (774)
+.+++.+|+|+|||....
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 789999999999997643
No 170
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.55 E-value=0.22 Score=38.45 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCCchHH-HHHHHHhCCChhHHHHHHHcCCccCC
Q 004098 10 EVIAKLIEMGFDDSDI-TEAVETVGPSFNDAIEYILNGSVRNS 51 (774)
Q Consensus 10 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~ 51 (774)
.-++.|.+|||.-.++ .+|+..++=....|+++++++....+
T Consensus 21 ~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 21 KEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCccC
Confidence 4688999999966665 99999999989999999999866443
No 171
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.37 E-value=1.8 Score=42.15 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCchHHH-HHHhhh--ccCCeEEEEcc
Q 004098 188 HHDCLVLAATGSGKSLC-FQIPAL--LTGKVVVVISP 221 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~-~~lpal--~~~~~~LVvsP 221 (774)
|.-+++.+|+|+|||.. .++... ..++.++++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 67788999999999954 333322 23566766653
No 172
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.26 E-value=0.98 Score=49.46 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=15.9
Q ss_pred CCEEEEecCCCchHHHHHH
Q 004098 189 HDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~l 207 (774)
..+++.+|+|+|||.....
T Consensus 131 ~~lll~Gp~G~GKTtLa~a 149 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQS 149 (440)
T ss_dssp CCEEEECSSSSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5799999999999976543
No 173
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.22 E-value=0.51 Score=50.68 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCchHHHHHHhhhccCCeEEEE
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~~~~~~LVv 219 (774)
.+-+|+.+|+|+|||+.+-..|-..+...+.|
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 47899999999999987644443333333333
No 174
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.18 E-value=0.38 Score=50.40 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=17.1
Q ss_pred CCEEEEecCCCchHHHHHHhh
Q 004098 189 HDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa 209 (774)
+.+++.+|+|+|||+.....+
T Consensus 46 ~~iLL~GppGtGKT~la~ala 66 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVA 66 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 679999999999998765444
No 175
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.90 E-value=0.4 Score=51.16 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=15.5
Q ss_pred CCCEEEEecCCCchHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~ 206 (774)
.+.+++.+|+|+|||....
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3569999999999997643
No 176
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.81 E-value=0.27 Score=48.18 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=13.8
Q ss_pred CEEEEecCCCchHHHH
Q 004098 190 DCLVLAATGSGKSLCF 205 (774)
Q Consensus 190 d~lv~apTGsGKTl~~ 205 (774)
.+++.+|+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999654
No 177
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.60 E-value=1.8 Score=47.28 Aligned_cols=147 Identities=15% Similarity=0.110 Sum_probs=70.4
Q ss_pred HHHHHHc----CCCEEEEecCCCchHHHHHHh---hhccCCeEEEEccchHHHHHHHHHHHh--cCCcEEEEcCCC----
Q 004098 181 ALSAWLA----HHDCLVLAATGSGKSLCFQIP---ALLTGKVVVVISPLISLMHDQCSKLSK--HGVTACFLGSGQ---- 247 (774)
Q Consensus 181 ai~~il~----g~d~lv~apTGsGKTl~~~lp---al~~~~~~LVvsPt~~L~~qq~~~l~~--~gi~~~~l~~~~---- 247 (774)
.+..++. |.=+++.+++|+|||...+-. +...+..+++++---+ ..|....+.. .++....+..+.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms-~~ql~~R~~~~~~~i~~~~l~~g~~~l~ 264 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG-KKENIKRLIVTAGSINAQKIKAARRDFA 264 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC-TTHHHHHHHHHHSCCCHHHHHHTGGGTC
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhcccCCCC
Confidence 4555553 455788899999999643322 2234678888865321 2233333322 233221111111
Q ss_pred --ChHHHH--HHHHcCCceEEEE-ChH-HHHHHHHHHHHHHHhcCcc--EEEEecccccccCC-CCcH-HHH----HHHH
Q 004098 248 --PDNKVE--QKALRGMYSIIYV-CPE-TVIRLIKPLQRLAESRGIA--LFAIDEVHCVSKWG-HDFR-PDY----RRLS 313 (774)
Q Consensus 248 --~~~~~~--~~~~~~~~~Ilv~-TPe-~l~~ll~~~~~~~~~~~i~--~iVIDEaH~l~~~g-~~fr-~~~----~~l~ 313 (774)
...... ...+.. ..|.|. +|+ .+..+...+..+....+++ +||||=...+..-+ ..-+ ..+ +.|.
T Consensus 265 ~~~~~~l~~a~~~l~~-~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk 343 (444)
T 3bgw_A 265 SEDWGKLSMAIGEISN-SNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLK 343 (444)
T ss_dssp CSCHHHHHHHHHHHHT-SCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHH
Confidence 111110 111222 345442 222 1223333334444445799 99999999886322 1112 122 3333
Q ss_pred HHHHHhcccccccccCCCCEEEEecc
Q 004098 314 VLRENFGANNLKSLKFDIPLMALTAT 339 (774)
Q Consensus 314 ~l~~~~~~~~~~~l~~~~~il~lTAT 339 (774)
.+.+.+ ++++++++-.
T Consensus 344 ~lAke~----------~v~vi~lsql 359 (444)
T 3bgw_A 344 KMAREL----------DVVVIALSQL 359 (444)
T ss_dssp HHHHHH----------TCEEEEEEEC
T ss_pred HHHHHh----------CCeEEEEecC
Confidence 333333 6888888764
No 178
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.51 E-value=1.6 Score=47.40 Aligned_cols=125 Identities=15% Similarity=0.117 Sum_probs=63.2
Q ss_pred CEEEEecCCCchHHHHHHhh-h--ccCCeEEEEc--cchHHHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHcCCceE
Q 004098 190 DCLVLAATGSGKSLCFQIPA-L--LTGKVVVVIS--PLISLMHDQCSKLSK-HGVTACFLGSGQPDNKVEQKALRGMYSI 263 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa-l--~~~~~~LVvs--Pt~~L~~qq~~~l~~-~gi~~~~l~~~~~~~~~~~~~~~~~~~I 263 (774)
-+++++|+|+|||......+ . ..+.+++++. +.+.-+.+|...+.. .++++.....+..
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~d--------------- 163 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQN--------------- 163 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSC---------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCC---------------
Confidence 46778899999997543222 2 2466666655 445545555555544 4665443322221
Q ss_pred EEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHH
Q 004098 264 IYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQ 343 (774)
Q Consensus 264 lv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~ 343 (774)
|..+. ......+.....++++||++-+..- +. -......+..+..... +..-++.+.|+....
T Consensus 164 ----p~~i~---~~al~~a~~~~~DvvIIDTaGr~~~-~~-d~~lm~el~~i~~~~~--------pd~vlLVlDa~~gq~ 226 (433)
T 3kl4_A 164 ----PIEIA---KKGVDIFVKNKMDIIIVDTAGRHGY-GE-ETKLLEEMKEMYDVLK--------PDDVILVIDASIGQK 226 (433)
T ss_dssp ----HHHHH---HHHHHHTTTTTCSEEEEEECCCSSS-CC-TTHHHHHHHHHHHHHC--------CSEEEEEEEGGGGGG
T ss_pred ----HHHHH---HHHHHHHHhcCCCEEEEECCCCccc-cC-CHHHHHHHHHHHHhhC--------CcceEEEEeCccchH
Confidence 22111 1001112224689999999976530 01 1223333433333322 244567788887654
Q ss_pred HHH
Q 004098 344 VRE 346 (774)
Q Consensus 344 ~~~ 346 (774)
...
T Consensus 227 a~~ 229 (433)
T 3kl4_A 227 AYD 229 (433)
T ss_dssp GHH
T ss_pred HHH
Confidence 433
No 179
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.44 E-value=0.43 Score=47.88 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=16.8
Q ss_pred CCCEEEEecCCCchHHHHHHh
Q 004098 188 HHDCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lp 208 (774)
.+.+++.+|+|+|||......
T Consensus 39 ~~~vll~G~~GtGKT~la~~l 59 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAV 59 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 467899999999999865433
No 180
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.36 E-value=0.35 Score=54.24 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=21.1
Q ss_pred CCEEEEecCCCchHHHHHHhhhccCCeEEEE
Q 004098 189 HDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpal~~~~~~LVv 219 (774)
+.+++.+|+|+|||.+....+-..+..++.+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 5799999999999987654443334344433
No 181
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.35 E-value=0.63 Score=48.50 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=12.5
Q ss_pred CccEEEEecccccc
Q 004098 286 GIALFAIDEVHCVS 299 (774)
Q Consensus 286 ~i~~iVIDEaH~l~ 299 (774)
...+++|||+|.+.
T Consensus 105 ~~~vliiDEi~~l~ 118 (324)
T 3u61_B 105 RQKVIVIDEFDRSG 118 (324)
T ss_dssp CEEEEEEESCCCGG
T ss_pred CCeEEEEECCcccC
Confidence 57899999999995
No 182
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.29 E-value=0.75 Score=44.12 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=53.9
Q ss_pred CCCEEEEecCCCchHHHHHHhh---hccCCeEEEEccchH-HHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceE
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLIS-LMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSI 263 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~-L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~I 263 (774)
.-.++|..++|-|||.+++-.+ +-.+.+++|+.-.+. .-..-...+.++++.......+-..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~-------------- 93 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTW-------------- 93 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCC--------------
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEccccccc--------------
Confidence 3479999999999998766444 356888998854442 1111122233344333222221110
Q ss_pred EEEChH------HHHHHHHHHHHHHHhcCccEEEEecccccccCCC
Q 004098 264 IYVCPE------TVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGH 303 (774)
Q Consensus 264 lv~TPe------~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~ 303 (774)
.+++ .....+......+....+++||+||.-....+|.
T Consensus 94 --~~~~~~~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~ 137 (196)
T 1g5t_A 94 --ETQNREADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDY 137 (196)
T ss_dssp --CGGGHHHHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTS
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCC
Confidence 1111 0111222223333346799999999987766663
No 183
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.28 E-value=0.36 Score=53.00 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=17.0
Q ss_pred CCEEEEecCCCchHHHHHHhh
Q 004098 189 HDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa 209 (774)
..+|+.+|+|+|||......+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia 71 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIA 71 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 368999999999998765444
No 184
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.24 E-value=0.29 Score=40.02 Aligned_cols=41 Identities=24% Similarity=0.443 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHHHcCCcc
Q 004098 9 DEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSVR 49 (774)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 49 (774)
...|..|++|||+-.++..|+...+-....|+++++.....
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 67889999999999999999977777899999999987654
No 185
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.22 E-value=0.59 Score=47.97 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=17.7
Q ss_pred CCCEEEEecCCCchHHHHHHhh
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa 209 (774)
.+.+++.+|+|+|||..+...+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la 75 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVA 75 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 5789999999999998764433
No 186
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.18 E-value=0.8 Score=47.75 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=55.0
Q ss_pred CCCEEEEecCCCchHHH-HHHhhh--c------------cC----CeEEEEccchHH-HHHHHHHHHhcCCcEEEEcCCC
Q 004098 188 HHDCLVLAATGSGKSLC-FQIPAL--L------------TG----KVVVVISPLISL-MHDQCSKLSKHGVTACFLGSGQ 247 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~-~~lpal--~------------~~----~~~LVvsPt~~L-~~qq~~~l~~~gi~~~~l~~~~ 247 (774)
|.-+++.+|+|+|||.. .++.+- . .+ +.+++++--..+ ..+..+.+.++|+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~-------- 169 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGID-------- 169 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCC--------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCC--------
Confidence 56789999999999954 333321 1 13 578888755433 34444445555542
Q ss_pred ChHHHHHHHHcCCceEEEE---ChHHHHHHHHHHHHHHHh-cCccEEEEecccccc
Q 004098 248 PDNKVEQKALRGMYSIIYV---CPETVIRLIKPLQRLAES-RGIALFAIDEVHCVS 299 (774)
Q Consensus 248 ~~~~~~~~~~~~~~~Ilv~---TPe~l~~ll~~~~~~~~~-~~i~~iVIDEaH~l~ 299 (774)
... +.. ++.|. +++.+..++..+...+.. .++++||||....+.
T Consensus 170 -~~~----~~~---~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 217 (322)
T 2i1q_A 170 -GQT----VLD---NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTF 217 (322)
T ss_dssp -HHH----HHH---TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHH
T ss_pred -HHH----Hhc---CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHH
Confidence 111 111 24444 344444444444455544 679999999998774
No 187
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.16 E-value=0.78 Score=45.49 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=22.5
Q ss_pred cCCCEEEEecCCCchHHHHHHhh---h-ccCCeEEEEc
Q 004098 187 AHHDCLVLAATGSGKSLCFQIPA---L-LTGKVVVVIS 220 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~lpa---l-~~~~~~LVvs 220 (774)
.|.-+.+.+|+|+|||......+ + ..+..++++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 47788999999999997543322 2 3444555554
No 188
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=90.99 E-value=0.37 Score=39.34 Aligned_cols=42 Identities=21% Similarity=0.465 Sum_probs=37.3
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhC-CChhHHHHHHHcCCcc
Q 004098 8 RDEVIAKLIEMGFDDSDITEAVETVG-PSFNDAIEYILNGSVR 49 (774)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~ 49 (774)
+...|+.|++|||.-.++..|+..++ -....|+++++++...
T Consensus 29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d 71 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDD 71 (84)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 47899999999999999999999997 5889999999987543
No 189
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.68 E-value=2.4 Score=41.71 Aligned_cols=136 Identities=13% Similarity=0.124 Sum_probs=65.3
Q ss_pred CCCEEEEecCCCchHH-HHHHhh---hccCCeEEEEccchHHHHHHHHHHHhcCCc---------EEEEcCCCChHHHHH
Q 004098 188 HHDCLVLAATGSGKSL-CFQIPA---LLTGKVVVVISPLISLMHDQCSKLSKHGVT---------ACFLGSGQPDNKVEQ 254 (774)
Q Consensus 188 g~d~lv~apTGsGKTl-~~~lpa---l~~~~~~LVvsPt~~L~~qq~~~l~~~gi~---------~~~l~~~~~~~~~~~ 254 (774)
|.-+++.+++|+|||. |.++.+ ...+..+++++-- .-..+..+.+...+.. ........ . ....
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~ 106 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE-ERARDLRREMASFGWDFEKYEKEGKIAIVDGVS-S-VVGL 106 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS-SCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----------
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc-CCHHHHHHHHHHcCCChHHHHhcCcchhhhhHH-H-Hhhc
Confidence 5678999999999995 444332 2335677777643 2244555555544321 11110000 0 0000
Q ss_pred HHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccC---CCCcHHHHHHHHHHHHHhcccccccccCCC
Q 004098 255 KALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKW---GHDFRPDYRRLSVLRENFGANNLKSLKFDI 331 (774)
Q Consensus 255 ~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~---g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~ 331 (774)
..........-.+++. ++............+++|||-...+... ...++.....|..+...+ ++
T Consensus 107 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~----------~i 173 (251)
T 2zts_A 107 PSEEKFVLEDRFNVDN---FLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM----------GV 173 (251)
T ss_dssp -----------CCHHH---HHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH----------CC
T ss_pred ccchhccccccccHHH---HHHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHc----------CC
Confidence 0000000111122333 3333445556677899999998876421 112344455555554444 67
Q ss_pred CEEEEecc
Q 004098 332 PLMALTAT 339 (774)
Q Consensus 332 ~il~lTAT 339 (774)
++++++-.
T Consensus 174 ~vi~~~q~ 181 (251)
T 2zts_A 174 TTILTTEA 181 (251)
T ss_dssp EEEEEECC
T ss_pred CeEEEEEE
Confidence 77776643
No 190
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.61 E-value=0.52 Score=48.57 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=16.2
Q ss_pred CCEEEEecCCCchHHHHHHhh
Q 004098 189 HDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa 209 (774)
+-+++.+|+|+|||......+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA 57 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVF 57 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457888999999998654433
No 191
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.57 E-value=1.5 Score=45.81 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=16.5
Q ss_pred CCEEEEecCCCchHHHHHHh
Q 004098 189 HDCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lp 208 (774)
..+++.+|+|+|||......
T Consensus 56 ~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 57999999999999875443
No 192
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.42 E-value=0.56 Score=51.00 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=21.4
Q ss_pred CCCEEEEecCCCchHHHHHHhhhccCCeEEEE
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~~~~~~LVv 219 (774)
.+-+|+.+|+|+|||+.+-..|-..+...+.|
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 46799999999999987644443333333333
No 193
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.33 E-value=2.6 Score=45.13 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=13.6
Q ss_pred CCEEE--EecCCCchHHHH
Q 004098 189 HDCLV--LAATGSGKSLCF 205 (774)
Q Consensus 189 ~d~lv--~apTGsGKTl~~ 205 (774)
..+++ .+|.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35777 799999999764
No 194
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=90.29 E-value=0.35 Score=56.80 Aligned_cols=62 Identities=21% Similarity=0.291 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHH--Hhhhc-----cCCeEEEEccchHHHHHHHHHHHh
Q 004098 172 SSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPALL-----TGKVVVVISPLISLMHDQCSKLSK 235 (774)
Q Consensus 172 ~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~--lpal~-----~~~~~LVvsPt~~L~~qq~~~l~~ 235 (774)
..+++-|++|+.. ....++|.|+.|||||.+.. +.-+. ....+|+|+.|+..+.+..+.+.+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 3689999999976 35689999999999996532 22222 235899999999998888877765
No 195
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.13 E-value=1 Score=45.25 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=18.3
Q ss_pred cCCCEEEEecCCCchHHHHHHhh
Q 004098 187 AHHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~lpa 209 (774)
.+..+++.+|+|+|||..+...+
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHHHHH
Confidence 36789999999999998764433
No 196
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.03 E-value=0.27 Score=36.10 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCC-CchHHHHHHHHhCCChhHHHHHHHcCCcc
Q 004098 9 DEVIAKLIEMGF-DDSDITEAVETVGPSFNDAIEYILNGSVR 49 (774)
Q Consensus 9 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 49 (774)
.-.+++|.|||| +.+.-.+|+...+=+...||+.++.....
T Consensus 10 a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~ 51 (54)
T 2cp8_A 10 AALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSGP 51 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence 347889999999 66668889999998999999999987543
No 197
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.00 E-value=0.9 Score=49.44 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=20.7
Q ss_pred CCCEEEEecCCCchHHHHHHhhhccCCeEE
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALLTGKVVV 217 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~~~~~~L 217 (774)
.+-+|+.+|+|+|||+.+-..|-..+...+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~~~~ 244 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGANFI 244 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 367999999999999876544433333333
No 198
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.99 E-value=1.5 Score=45.39 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=16.2
Q ss_pred CCCEEEEecCCCchHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~ 206 (774)
++++++.+|||+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997543
No 199
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.87 E-value=0.56 Score=57.55 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=64.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc-----cccCcccCCcc
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCG---FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----FGMGIDKLNVR 582 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a-----~~~GIDip~V~ 582 (774)
.+.++||.++|+.-+.++++.|.. .++++..+||+++..+|....+.+..|..+|||+|.- +.. ++..+++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~ 198 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFD 198 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCS
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcC
Confidence 456899999999999999999998 5789999999999999999999999999999999953 222 5667888
Q ss_pred eEEE
Q 004098 583 RIIH 586 (774)
Q Consensus 583 ~VI~ 586 (774)
+||.
T Consensus 199 ~lVi 202 (1104)
T 4ddu_A 199 FVFV 202 (1104)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8884
No 200
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.74 E-value=1.2 Score=47.23 Aligned_cols=89 Identities=19% Similarity=0.162 Sum_probs=51.8
Q ss_pred CCCEEEEecCCCchHHHHH-Hhhh--ccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEE
Q 004098 188 HHDCLVLAATGSGKSLCFQ-IPAL--LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~-lpal--~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Il 264 (774)
|.-+++.+|+|+|||...+ +... ..++.+++|..-.++-.. .+.++|+.. -+++
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~---ra~rlgv~~--------------------~~l~ 117 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV---YAKNLGVDL--------------------KSLL 117 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHHTCCG--------------------GGCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH---HHHHcCCch--------------------hhhh
Confidence 5678899999999996433 2221 246677777664433222 233334320 1345
Q ss_pred EEChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 265 YVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 265 v~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
+..|..+...+...........++++|||.+-.+.
T Consensus 118 i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 118 ISQPDHGEQALEIVDELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp EECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCC
T ss_pred hhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhhc
Confidence 55555444444444444445678999999987664
No 201
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.68 E-value=2 Score=45.02 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=14.7
Q ss_pred CCEEEEecCCCchHHHH
Q 004098 189 HDCLVLAATGSGKSLCF 205 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~ 205 (774)
.++++.+|+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999764
No 202
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=89.64 E-value=0.28 Score=57.14 Aligned_cols=62 Identities=23% Similarity=0.336 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHH--Hhhhc-----cCCeEEEEccchHHHHHHHHHHHhc
Q 004098 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ--IPALL-----TGKVVVVISPLISLMHDQCSKLSKH 236 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~--lpal~-----~~~~~LVvsPt~~L~~qq~~~l~~~ 236 (774)
.+++-|++|+... +..++|.|+.|||||.+.. +.-+. ....+|+|++|+..+.+..+.+.+.
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 5789999999753 6789999999999997533 22121 3468999999999999988888763
No 203
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.52 E-value=0.88 Score=48.21 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=17.4
Q ss_pred CCCEEEEecCCCchHHHHHHhh
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa 209 (774)
++.+++.+|+|+|||......+
T Consensus 70 ~~~vLl~GppGtGKT~la~~la 91 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMA 91 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999998755433
No 204
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.45 E-value=1.1 Score=46.17 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=21.8
Q ss_pred CCCEEEEecCCCchHHHHHHhhhccCCeEEEE
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~~~~~~LVv 219 (774)
++.+++.+|+|+|||+.....+-..+...+.+
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v 80 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQANFISI 80 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhCCCEEEE
Confidence 56799999999999987654443334333333
No 205
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.38 E-value=0.88 Score=47.03 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=14.1
Q ss_pred CEEEEecCCCchHHHH
Q 004098 190 DCLVLAATGSGKSLCF 205 (774)
Q Consensus 190 d~lv~apTGsGKTl~~ 205 (774)
++++.+|+|+|||...
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 5999999999999764
No 206
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=89.37 E-value=1.7 Score=48.15 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=21.1
Q ss_pred CCCEEEEecCCCchHHHHHHhhhccCCeEEE
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALLTGKVVVV 218 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~~~~~~LV 218 (774)
.+.+|+.+|+|+|||+.+...+-..+...+.
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~ 268 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFL 268 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCSSEEEE
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 3579999999999998765444333333333
No 207
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.33 E-value=2 Score=54.54 Aligned_cols=96 Identities=20% Similarity=0.203 Sum_probs=58.2
Q ss_pred HHHHHHc------CCCEEEEecCCCchHHHHHHhh---hccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHH
Q 004098 181 ALSAWLA------HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK 251 (774)
Q Consensus 181 ai~~il~------g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~ 251 (774)
.+..++. |.-+++.+|+|+|||...+-.+ ...+..+++++--.++ .|.. ...+|+..
T Consensus 719 eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~-~ql~--A~~lGvd~----------- 784 (1706)
T 3cmw_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-DPIY--ARKLGVDI----------- 784 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC-CHHH--HHHTTCCG-----------
T ss_pred HHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH-HHHH--HHHcCCCh-----------
Confidence 4555553 5678999999999996543222 2345567777643322 2221 33344321
Q ss_pred HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 252 VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 252 ~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
-+++|..+..+..++..+........+++||||+...+.
T Consensus 785 ---------~~L~i~~~~~leei~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 785 ---------DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp ---------GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ---------hheEEecCCcHHHHHHHHHHHHHccCCCEEEEechhhhc
Confidence 135666666665555555555555789999999999886
No 208
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=89.27 E-value=0.48 Score=46.70 Aligned_cols=37 Identities=19% Similarity=0.053 Sum_probs=26.7
Q ss_pred CCCEEEEecCCCchHHHHHHhh---hccCCeEEEEccchH
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLIS 224 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~ 224 (774)
|+=.++.+|+|+|||...+--+ ...+.+++|+-|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 5556788999999997644333 346788999988753
No 209
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.11 E-value=1.2 Score=48.17 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=19.2
Q ss_pred CCCEEEEecCCCchHHHHHHhhhccC
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALLTG 213 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~~~ 213 (774)
.+-+|+.+|+|+|||+.+-..|-..+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCCceECCCCchHHHHHHHHHHHhC
Confidence 36799999999999987644443333
No 210
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.03 E-value=0.68 Score=48.00 Aligned_cols=18 Identities=11% Similarity=-0.236 Sum_probs=14.6
Q ss_pred CEEEEecCCCchHHHHHH
Q 004098 190 DCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~l 207 (774)
..|+.+|.|+|||.+...
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 20 SILINGEDLSYPREVSLE 37 (305)
T ss_dssp EEEEECSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 588899999999976533
No 211
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=89.01 E-value=0.46 Score=59.23 Aligned_cols=61 Identities=21% Similarity=0.235 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHH---Hhhhcc------CCeEEEEccchHHHHHHHHHHHh
Q 004098 173 SLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ---IPALLT------GKVVVVISPLISLMHDQCSKLSK 235 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~---lpal~~------~~~~LVvsPt~~L~~qq~~~l~~ 235 (774)
.+++-|.++|..- +++++|.|.-|||||.+-. +-.+.. ...+|+|++|++.+....+.+..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 6899999999764 8899999999999997643 222222 24799999999999888888765
No 212
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=88.91 E-value=3.2 Score=46.11 Aligned_cols=110 Identities=15% Similarity=0.075 Sum_probs=53.6
Q ss_pred CCCEEEEecCCCchHHHHH-Hh--hhcc-CCeEEEEccchHHHHHHHHHHHh--cCCcEEE---EcCCC-Ch---HHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQ-IP--ALLT-GKVVVVISPLISLMHDQCSKLSK--HGVTACF---LGSGQ-PD---NKVEQ 254 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~-lp--al~~-~~~~LVvsPt~~L~~qq~~~l~~--~gi~~~~---l~~~~-~~---~~~~~ 254 (774)
|.=+++.+++|+|||...+ +. +... +..+++++---+ ..|....+.. .++.... +..+. .. .....
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 320 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFD 320 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHH
Confidence 5568889999999996433 22 2223 567888765322 3344444322 2332100 00000 00 00111
Q ss_pred HHHcCCceEEEE-Ch--HHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 255 KALRGMYSIIYV-CP--ETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 255 ~~~~~~~~Ilv~-TP--e~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
.++.. ..+.+. +| ..+..++..+.......++++||||=...+.
T Consensus 321 ~~~~~-~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~ 367 (503)
T 1q57_A 321 ELFGN-DTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVV 367 (503)
T ss_dssp HHHTT-TCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCC
T ss_pred HHhcc-CCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcC
Confidence 11122 244443 33 2333444444445555679999999888774
No 213
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=88.75 E-value=4.5 Score=43.47 Aligned_cols=104 Identities=15% Similarity=0.240 Sum_probs=54.2
Q ss_pred HHHHHHc-----CCCEEEEecCCCchHHHHH-Hh--hhc------cCCeEEEEccchHHHH-HHHHHHHhcCCcEEEEcC
Q 004098 181 ALSAWLA-----HHDCLVLAATGSGKSLCFQ-IP--ALL------TGKVVVVISPLISLMH-DQCSKLSKHGVTACFLGS 245 (774)
Q Consensus 181 ai~~il~-----g~d~lv~apTGsGKTl~~~-lp--al~------~~~~~LVvsPt~~L~~-qq~~~l~~~gi~~~~l~~ 245 (774)
.+..+|. |.-+++.+|.|+|||.... +. .+. .++.++++.-...+-. ......+++|+.
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~------ 239 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLD------ 239 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCC------
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCC------
Confidence 4556663 5678899999999996543 22 222 2456787764332211 122223344432
Q ss_pred CCChHHHHHHHHcCCceEEEEC---hHHHHHHHHHHHHHHHhcCccEEEEeccccccc
Q 004098 246 GQPDNKVEQKALRGMYSIIYVC---PETVIRLIKPLQRLAESRGIALFAIDEVHCVSK 300 (774)
Q Consensus 246 ~~~~~~~~~~~~~~~~~Ilv~T---Pe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~ 300 (774)
.. ..+. +|.+.. .+....++......+....+++|||||.-.+..
T Consensus 240 ---~~----~vle---ni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 240 ---PD----DALN---NVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp ---HH----HHHH---TEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred ---hH----hHhh---cEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 11 1111 233332 223333333333444456799999999877653
No 214
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=88.74 E-value=0.6 Score=45.47 Aligned_cols=37 Identities=24% Similarity=0.141 Sum_probs=24.6
Q ss_pred CCCEEEEecCCCchHHHHHHhh---hccCCeEEEEccchH
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLIS 224 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~ 224 (774)
|.=.++.+|.|+|||...+--+ ...+.+++|+-|.+.
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 5556889999999996433222 234678888888643
No 215
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.51 E-value=0.4 Score=61.49 Aligned_cols=96 Identities=21% Similarity=0.200 Sum_probs=60.4
Q ss_pred HHHHHHc------CCCEEEEecCCCchHHHHH---HhhhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHH
Q 004098 181 ALSAWLA------HHDCLVLAATGSGKSLCFQ---IPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK 251 (774)
Q Consensus 181 ai~~il~------g~d~lv~apTGsGKTl~~~---lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~ 251 (774)
.+..++. ++++++.+|+|+|||..+. ..+...+.+++++..--++.... ++++|+..-
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~---------- 1480 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDID---------- 1480 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTT----------
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCch----------
Confidence 3666775 6899999999999997543 23344677888888754433322 444453210
Q ss_pred HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 252 VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 252 ~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
.+.|..|+....++.....+.....+++|||||..-+.
T Consensus 1481 ----------~l~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1481 ----------NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp ----------TCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ----------hceeecCChHHHHHHHHHHHHhcCCCCEEEEcChhHhc
Confidence 13444554333444444555666789999999997554
No 216
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.51 E-value=1.3 Score=48.20 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=18.1
Q ss_pred CCCEEEEecCCCchHHHHHHhhh
Q 004098 188 HHDCLVLAATGSGKSLCFQIPAL 210 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal 210 (774)
-+-+|+.+|+|+|||+.+-..|-
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHh
Confidence 46799999999999987644443
No 217
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.43 E-value=0.66 Score=50.90 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCchHHHHHHhhhcc-CCeEEEEc
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALLT-GKVVVVIS 220 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~~-~~~~LVvs 220 (774)
.+.+|+.+|+|+|||+.+...+-.. +...+.+.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~ 200 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 4679999999999998765444332 33444443
No 218
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=88.30 E-value=2 Score=41.68 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=53.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEeccc------ccCcccCC
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCGF-----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF------GMGIDKLN 580 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~------~~GIDip~ 580 (774)
..++||.|+++.-+.++++.+.+. ++++..++|+.+..++.. .+..+..+|+|+|.-. ...++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999998887764 789999999988766543 3455678999999521 22355666
Q ss_pred cceEEE
Q 004098 581 VRRIIH 586 (774)
Q Consensus 581 V~~VI~ 586 (774)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 776663
No 219
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=87.99 E-value=1.4 Score=41.18 Aligned_cols=73 Identities=8% Similarity=0.035 Sum_probs=55.3
Q ss_pred cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHH---HHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCcc
Q 004098 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (774)
Q Consensus 212 ~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~---~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~ 288 (774)
..+++||.++++..+......|.+.|+.+..++++.+.... ...+..+..+|+|+|.- + ..-+++..++
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-~-------~~Gid~~~~~ 104 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-C-------ARGIDVKQVT 104 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-C-------CTTTCCTTEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-h-------hcCCCcccCC
Confidence 46789999999999999999999999999999999877443 34455788899999932 1 1122445567
Q ss_pred EEEE
Q 004098 289 LFAI 292 (774)
Q Consensus 289 ~iVI 292 (774)
+||.
T Consensus 105 ~Vi~ 108 (175)
T 2rb4_A 105 IVVN 108 (175)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 220
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=87.92 E-value=1 Score=46.60 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.7
Q ss_pred CEEEEecCCCchHHHHH
Q 004098 190 DCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~ 206 (774)
.+++.+|+|+|||....
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 69999999999997643
No 221
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=87.86 E-value=0.6 Score=39.83 Aligned_cols=39 Identities=26% Similarity=0.456 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCCc-hHHHHHHHHhCCChhHHHHHHHcCC
Q 004098 9 DEVIAKLIEMGFDD-SDITEAVETVGPSFNDAIEYILNGS 47 (774)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~ 47 (774)
+.-|+.|.||||.- +++..|+..++=....|++.+++|.
T Consensus 67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 66789999999954 6899999999988999999999874
No 222
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=87.77 E-value=0.44 Score=41.60 Aligned_cols=38 Identities=26% Similarity=0.456 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHHHcCC
Q 004098 10 EVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGS 47 (774)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 47 (774)
+.+..|.||||+-++|..|+...+-..+.|+++++.+.
T Consensus 78 ~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~~ 115 (118)
T 4ae4_A 78 QLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARA 115 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 45899999999999999999999999999999998764
No 223
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=87.50 E-value=1.3 Score=43.16 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=25.2
Q ss_pred CCCEEEEecCCCchHHHHHHhh---hccCCeEEEEccchH
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLIS 224 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~ 224 (774)
|+=.++.+|.|+|||...+--+ ...+.+++|+-|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 3435678999999997654333 246788999998753
No 224
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=87.39 E-value=1.5 Score=40.51 Aligned_cols=73 Identities=12% Similarity=0.130 Sum_probs=55.2
Q ss_pred cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHH---HHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCcc
Q 004098 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (774)
Q Consensus 212 ~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~---~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~ 288 (774)
.++++||.++++.-+......|.+.|+.+..++++.+.... ...+..+..+|+|+|.- + ..-+++..++
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~-~-------~~Gld~~~~~ 105 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDV-A-------ARGIDIENIS 105 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-G-------TTTCCCSCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCh-h-------hcCCchhcCC
Confidence 46789999999999999999999999999999998876433 34455788899999932 2 1222445677
Q ss_pred EEEE
Q 004098 289 LFAI 292 (774)
Q Consensus 289 ~iVI 292 (774)
+||.
T Consensus 106 ~Vi~ 109 (163)
T 2hjv_A 106 LVIN 109 (163)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 225
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=87.33 E-value=0.75 Score=51.62 Aligned_cols=18 Identities=44% Similarity=0.501 Sum_probs=15.8
Q ss_pred CCCEEEEecCCCchHHHH
Q 004098 188 HHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~ 205 (774)
..+++|.+.||||||.+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L 231 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGV 231 (574)
T ss_dssp SCCEEEECCTTSSHHHHH
T ss_pred CCeeEEECCCCCCHHHHH
Confidence 468999999999999763
No 226
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.27 E-value=1.5 Score=47.64 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=17.3
Q ss_pred CCCEEEEecCCCchHHHHHHhh
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa 209 (774)
.+-+|+.+|+|+|||+.+-..|
T Consensus 206 prGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3569999999999998764433
No 227
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.04 E-value=7 Score=39.76 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=22.6
Q ss_pred cCCCEEEEecCCCchHHHHHHhh-hc--c-CCeEEEEcc
Q 004098 187 AHHDCLVLAATGSGKSLCFQIPA-LL--T-GKVVVVISP 221 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~lpa-l~--~-~~~~LVvsP 221 (774)
.|.=+++.+|+|+|||......+ .. . +..++++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 36678899999999996543322 21 2 436767653
No 228
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=86.95 E-value=9.2 Score=39.35 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEecCCCchHHHHH-Hhhhc--cCCeEEEEc--cchHHHHHHHH
Q 004098 157 WEVKVNSLLKKHFGHSSLKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ-IPALL--TGKVVVVIS--PLISLMHDQCS 231 (774)
Q Consensus 157 ~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~-lpal~--~~~~~LVvs--Pt~~L~~qq~~ 231 (774)
+...+.+.|.+.++...+-.+. .-.++-+++++|+|+|||.... +..++ .+++++++. +.+.-+.+|..
T Consensus 79 ~~~~~~~~l~~~l~~~~~~~~~------~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~ 152 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKLNVP------PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLK 152 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCCCCC------SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCccc------CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHH
Confidence 5556666776666543211000 1124457789999999996533 33222 355555553 33433444433
Q ss_pred -HHHhcCCcE
Q 004098 232 -KLSKHGVTA 240 (774)
Q Consensus 232 -~l~~~gi~~ 240 (774)
.+...++..
T Consensus 153 ~~~~~~gl~~ 162 (306)
T 1vma_A 153 IWGERVGATV 162 (306)
T ss_dssp HHHHHHTCEE
T ss_pred HHHHHcCCcE
Confidence 333456654
No 229
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.86 E-value=3.4 Score=53.16 Aligned_cols=97 Identities=20% Similarity=0.179 Sum_probs=58.8
Q ss_pred HHHHHHHc------CCCEEEEecCCCchHHHHHHhh---hccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChH
Q 004098 180 EALSAWLA------HHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN 250 (774)
Q Consensus 180 ~ai~~il~------g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~ 250 (774)
..+..++. |+=+++.+|+|+|||...+-.+ ...+..+++++---++-. .. ..++|+..
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~-~~--a~~lGvd~---------- 435 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP-IY--ARKLGVDI---------- 435 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCH-HH--HHHTTCCT----------
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHH-HH--HHHcCCCH----------
Confidence 35666664 4668889999999996543222 234567777765433321 11 33344321
Q ss_pred HHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 251 KVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 251 ~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
-+++|..|..+..++..+..+.....+++||||....+.
T Consensus 436 ----------~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 436 ----------DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp ----------TTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ----------HHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 134556565555555544555556789999999999886
No 230
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=86.76 E-value=0.59 Score=49.63 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.1
Q ss_pred CEEEEecCCCchHHHHH
Q 004098 190 DCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~ 206 (774)
-+++.+|+|+|||....
T Consensus 40 ~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999997643
No 231
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=86.70 E-value=7.9 Score=40.04 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHH-cCCCEEEEecCCCchHHHH
Q 004098 175 KNFQKEALSAWL-AHHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 175 r~~Q~~ai~~il-~g~d~lv~apTGsGKTl~~ 205 (774)
|.-+.+.+..++ .++.++|.+|.|.|||...
T Consensus 17 R~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 17 REEESRKLEESLENYPLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp CHHHHHHHHHHHHHCSEEEEECCTTSSHHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEECCCcCCHHHHH
Confidence 333444444433 3678999999999999653
No 232
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.47 E-value=4.6 Score=42.51 Aligned_cols=104 Identities=15% Similarity=0.230 Sum_probs=54.2
Q ss_pred HHHHHHc-----CCCEEEEecCCCchHHH-HHHhhhc--c------CCeEEEEccchHH-HHHHHHHHHhcCCcEEEEcC
Q 004098 181 ALSAWLA-----HHDCLVLAATGSGKSLC-FQIPALL--T------GKVVVVISPLISL-MHDQCSKLSKHGVTACFLGS 245 (774)
Q Consensus 181 ai~~il~-----g~d~lv~apTGsGKTl~-~~lpal~--~------~~~~LVvsPt~~L-~~qq~~~l~~~gi~~~~l~~ 245 (774)
.+..+|. |+-+.+.+|.|+|||.. .++.... . ++.+|+|.-.-.+ ..+....+..+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~------ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLD------ 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCC------
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCC------
Confidence 5566663 56788999999999964 4443333 1 3576777543221 22222233333321
Q ss_pred CCChHHHHHHHHcCCceEEEE---ChHHHHHHHHHHHHHHHh-----cCccEEEEeccccccc
Q 004098 246 GQPDNKVEQKALRGMYSIIYV---CPETVIRLIKPLQRLAES-----RGIALFAIDEVHCVSK 300 (774)
Q Consensus 246 ~~~~~~~~~~~~~~~~~Ilv~---TPe~l~~ll~~~~~~~~~-----~~i~~iVIDEaH~l~~ 300 (774)
.. .... .|.+. +++....++......+.. .+.++|||||.-.+.+
T Consensus 193 ---~~----~v~~---ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld 245 (349)
T 1pzn_A 193 ---PD----EVLK---HIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 245 (349)
T ss_dssp ---HH----HHGG---GEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHH
T ss_pred ---HH----HHhh---CEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhh
Confidence 10 1111 22222 233333333333444433 5799999999987753
No 233
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.04 E-value=1.6 Score=45.09 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=53.0
Q ss_pred CEEEEecCCCchHHHHH-Hhh--hcc--CCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEE
Q 004098 190 DCLVLAATGSGKSLCFQ-IPA--LLT--GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSII 264 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~-lpa--l~~--~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Il 264 (774)
-+++.+|+|+|||...+ +.+ ... ++++++|..--++-.. .++++|+.. -+++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~lGvd~--------------------d~ll 86 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRSMGVDP--------------------ERVI 86 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHHTTCCG--------------------GGEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHHhCCCH--------------------HHeE
Confidence 47889999999996432 221 222 6788888776555322 345555431 1466
Q ss_pred EEChHHHHHH-HHHHHHH--HHhcCccEEEEecccccc
Q 004098 265 YVCPETVIRL-IKPLQRL--AESRGIALFAIDEVHCVS 299 (774)
Q Consensus 265 v~TPe~l~~l-l~~~~~~--~~~~~i~~iVIDEaH~l~ 299 (774)
+..|..+... +.....+ +....+++||||=+-.+.
T Consensus 87 v~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 87 HTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp EEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred EEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 6666655444 3322222 334578999999998874
No 234
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=85.97 E-value=2.1 Score=42.00 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=50.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEeccc------ccCcccC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGF-----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF------GMGIDKL 579 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~------~~GIDip 579 (774)
...++||.|+++.-+.++++.+... ++++..++|+.+..++...+ ...+|+|+|.-- ...++..
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 4568999999999999999988763 67899999999877654433 257899999531 1234555
Q ss_pred CcceEE
Q 004098 580 NVRRII 585 (774)
Q Consensus 580 ~V~~VI 585 (774)
++++||
T Consensus 166 ~~~~lV 171 (230)
T 2oxc_A 166 SIRLFI 171 (230)
T ss_dssp GCCEEE
T ss_pred cCCEEE
Confidence 565555
No 235
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.95 E-value=3.1 Score=42.12 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=17.5
Q ss_pred HHcCCCEEEEecCCCchHHHHH
Q 004098 185 WLAHHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 185 il~g~d~lv~apTGsGKTl~~~ 206 (774)
+..|+-+++.+|+|+|||....
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHH
Confidence 3457889999999999996543
No 236
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=85.84 E-value=2.5 Score=46.61 Aligned_cols=85 Identities=14% Similarity=0.053 Sum_probs=58.2
Q ss_pred CCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhc-CCcEEEEcCCC---------ChHH------
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKH-GVTACFLGSGQ---------PDNK------ 251 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~-gi~~~~l~~~~---------~~~~------ 251 (774)
+....+.+-||||||++..-.+-..+..+|||+|+..++.+.+..|+.+ +-. +.+.-.. +...
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp~~e~lpyd~~~p~~~~~~~Rl 92 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDIISSRL 92 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECCCCCSCTTCSSCCCHHHHHHHH
T ss_pred CCeEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEeCcccccccccCCChHHHHHHH
Confidence 5567889999999998654444345678999999999999999999986 334 4433221 1111
Q ss_pred -HHHHHHcCCceEEEEChHHHHH
Q 004098 252 -VEQKALRGMYSIIYVCPETVIR 273 (774)
Q Consensus 252 -~~~~~~~~~~~Ilv~TPe~l~~ 273 (774)
....+..+...|+|+|...+..
T Consensus 93 ~~l~~L~~~~~~ivv~sv~al~~ 115 (483)
T 3hjh_A 93 STLYQLPTMQRGVLIVPVNTLMQ 115 (483)
T ss_dssp HHHHHGGGCCSSEEEEEHHHHHB
T ss_pred HHHHHHHhCCCCEEEEEHHHHhh
Confidence 1223334556799999887764
No 237
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=85.78 E-value=3.7 Score=39.06 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=60.2
Q ss_pred CchHHHHHHhhhc-cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHH---HHHHHcCCceEEEEChHHHHHH
Q 004098 199 SGKSLCFQIPALL-TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRL 274 (774)
Q Consensus 199 sGKTl~~~lpal~-~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~---~~~~~~~~~~Ilv~TPe~l~~l 274 (774)
..|.. +++-.+. .++++||.++++.-+......|...|+.+..++++.+.... ...+..+..+|+|+|.- +
T Consensus 40 ~~K~~-~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~-~--- 114 (191)
T 2p6n_A 40 EAKMV-YLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDV-A--- 114 (191)
T ss_dssp GGHHH-HHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHH-H---
T ss_pred HHHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCc-h---
Confidence 45543 3333332 36689999999999999999999999999999998876443 34455788999999932 1
Q ss_pred HHHHHHHHHhcCccEEEE
Q 004098 275 IKPLQRLAESRGIALFAI 292 (774)
Q Consensus 275 l~~~~~~~~~~~i~~iVI 292 (774)
..-++...+++||.
T Consensus 115 ----~~Gldi~~v~~VI~ 128 (191)
T 2p6n_A 115 ----SKGLDFPAIQHVIN 128 (191)
T ss_dssp ----HTTCCCCCCSEEEE
T ss_pred ----hcCCCcccCCEEEE
Confidence 22234556777765
No 238
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=85.67 E-value=0.89 Score=40.31 Aligned_cols=42 Identities=19% Similarity=0.473 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHHHcCCc
Q 004098 7 SRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSV 48 (774)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 48 (774)
.....|..|++|||+..++..|+..++-....|+++++++..
T Consensus 77 ~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 77 PPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 457889999999999999999999999889999999998754
No 239
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=85.66 E-value=2 Score=40.08 Aligned_cols=73 Identities=12% Similarity=0.019 Sum_probs=55.5
Q ss_pred cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHH---HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCcc
Q 004098 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (774)
Q Consensus 212 ~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~---~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~ 288 (774)
...++||.++++.-+......|...|+.+..++++.+... ....+..+..+|+|+|.- + ..-++...++
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-------~~Gldi~~~~ 101 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-F-------GRGMDIERVN 101 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-C-------STTCCGGGCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-h-------hcCcchhhCC
Confidence 4678999999999999999999999999999999887644 334456788999999932 2 1122345567
Q ss_pred EEEE
Q 004098 289 LFAI 292 (774)
Q Consensus 289 ~iVI 292 (774)
+||.
T Consensus 102 ~Vi~ 105 (172)
T 1t5i_A 102 IAFN 105 (172)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 240
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=85.22 E-value=1.4 Score=54.49 Aligned_cols=75 Identities=12% Similarity=0.163 Sum_probs=64.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec-ccccCcccCCcceEE
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-AFGMGIDKLNVRRII 585 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~-a~~~GIDip~V~~VI 585 (774)
.+.+++|.|+|+.-+.+.++.+.+ .++++..+++..+..++...++.+..|+.+|+|+|. .+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 456899999999999998888875 367899999999999999999999999999999995 455567888888877
No 241
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=85.10 E-value=1.9 Score=39.88 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=54.8
Q ss_pred cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHH---HHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCcc
Q 004098 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (774)
Q Consensus 212 ~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~---~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~ 288 (774)
..+++||.++++.-+......|.+.++.+..++++.+.... ...+..+..+|+|+|.- + ..-++...++
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~-------~~G~d~~~~~ 100 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-L-------ARGIDVQQVS 100 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG-G-------TTTCCCCSCS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh-h-------hcCCCcccCC
Confidence 46789999999999999999999999999999998876433 34455678899999932 1 1122345566
Q ss_pred EEEE
Q 004098 289 LFAI 292 (774)
Q Consensus 289 ~iVI 292 (774)
+||.
T Consensus 101 ~Vi~ 104 (165)
T 1fuk_A 101 LVIN 104 (165)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 242
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=84.98 E-value=1.8 Score=40.95 Aligned_cols=73 Identities=8% Similarity=0.023 Sum_probs=50.1
Q ss_pred cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChH---HHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCcc
Q 004098 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (774)
Q Consensus 212 ~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~---~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~ 288 (774)
.+.++||.++++.-+......|...|+.+..++++.+.. .....+..+..+|+|+|.- + ..-++...++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-------~~Gldi~~~~ 116 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV-A-------ARGLDISNVK 116 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC--------------CCCSBS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcCh-h-------hcCCCcccCC
Confidence 467899999999999999999999999999999887653 3344566788999999922 2 2233556677
Q ss_pred EEEE
Q 004098 289 LFAI 292 (774)
Q Consensus 289 ~iVI 292 (774)
+||.
T Consensus 117 ~VI~ 120 (185)
T 2jgn_A 117 HVIN 120 (185)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 243
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=84.96 E-value=10 Score=38.81 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=26.1
Q ss_pred CCCEEEEecCCCchHHHHH-Hhhhc---cCCeEEEEc--cchHHHHHHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQ-IPALL---TGKVVVVIS--PLISLMHDQCSKL 233 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~-lpal~---~~~~~LVvs--Pt~~L~~qq~~~l 233 (774)
++-+++++|+|+|||.... |.... .+.+++++. |.+..+.++...+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~ 156 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTY 156 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHH
Confidence 5568889999999996543 33222 343555543 3333444444443
No 244
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=84.86 E-value=0.33 Score=34.82 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHHHcCCc
Q 004098 9 DEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSV 48 (774)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 48 (774)
.+.|+.|++|||+-.++.+|..+.+-....|..+++.+..
T Consensus 5 ~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~ 44 (47)
T 1dv0_A 5 KEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNF 44 (47)
T ss_dssp HHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcC
Confidence 6778999999999999999999999888889999987643
No 245
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=84.82 E-value=1.4 Score=45.66 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=17.5
Q ss_pred CCCEEEEecCCCchHHHHHHh
Q 004098 188 HHDCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lp 208 (774)
...+++.+|||+|||+.+...
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i 45 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARAL 45 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHH
T ss_pred CCcEEEECCCCchHHHHHHHH
Confidence 568999999999999876443
No 246
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=84.67 E-value=3 Score=40.38 Aligned_cols=73 Identities=11% Similarity=0.045 Sum_probs=55.5
Q ss_pred ccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHH---HHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCc
Q 004098 211 LTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGI 287 (774)
Q Consensus 211 ~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~---~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i 287 (774)
..++.+||.+|++.-+......|.+.|+.+..++++.+.... ...+..+..+|+|+|.- + ..-++...+
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~-~-------~~Gidi~~v 100 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV-A-------ARGLDIPQV 100 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT-T-------TCSSSCCCB
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh-h-------hcCCCCccC
Confidence 357899999999999999999999999999999999887543 34456788999999932 1 112334566
Q ss_pred cEEE
Q 004098 288 ALFA 291 (774)
Q Consensus 288 ~~iV 291 (774)
++||
T Consensus 101 ~~Vi 104 (212)
T 3eaq_A 101 DLVV 104 (212)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 7666
No 247
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=84.62 E-value=1.5 Score=31.59 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=25.1
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhCCChhH
Q 004098 9 DEVIAKLIEMGFDDSDITEAVETVGPSFND 38 (774)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (774)
++-|+.|++|||+.+++.+|+..+.-...-
T Consensus 12 ~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~ 41 (52)
T 2ooa_A 12 DAKIAKLMGEGYAFEEVKRALEIAQNNVEV 41 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHH
Confidence 478999999999999999999987754433
No 248
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=84.27 E-value=1.2 Score=46.14 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=15.8
Q ss_pred cCCCEEEEecCCCchHHHHH
Q 004098 187 AHHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~ 206 (774)
.|+-+++.+|+|+|||...+
T Consensus 122 ~gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45667999999999996543
No 249
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=84.05 E-value=3 Score=41.47 Aligned_cols=72 Identities=15% Similarity=0.290 Sum_probs=52.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc-----cc--cCcccC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----FG--MGIDKL 579 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a-----~~--~GIDip 579 (774)
...++||.++++.-+.++++.+... ++.+..++|+.+...+...+ .+..+|+|+|.- +. .+++..
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3457999999999999998877654 78899999998876554333 346799999952 11 345666
Q ss_pred CcceEEE
Q 004098 580 NVRRIIH 586 (774)
Q Consensus 580 ~V~~VI~ 586 (774)
++++||.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 6776663
No 250
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=84.01 E-value=7.9 Score=37.35 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=15.5
Q ss_pred CCCEEEEecCCCchHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~ 206 (774)
|.-+.+++|+|+|||....
T Consensus 25 G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5668889999999996544
No 251
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=83.82 E-value=2 Score=48.07 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=55.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~ 570 (774)
.+.+||.++++.-+....+.|...|+.+..+|++.+..++..+...+..|..+|+++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 46899999999999999999999999999999999999999999999999999999995
No 252
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=83.72 E-value=1.8 Score=49.34 Aligned_cols=59 Identities=27% Similarity=0.397 Sum_probs=54.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHH--hcCCceEEEEec
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEF--HENKLEVVVATI 570 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F--~~g~~~vLVAT~ 570 (774)
.+.+||.++++.-+....+.|...|+.+..++|+++..++..+...+ ..+..+|||+|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 56899999999999999999999999999999999999999998888 578999999997
No 253
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.49 E-value=7.3 Score=49.49 Aligned_cols=97 Identities=21% Similarity=0.178 Sum_probs=58.0
Q ss_pred HHHHHHHc------CCCEEEEecCCCchHHHHHHh---hhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChH
Q 004098 180 EALSAWLA------HHDCLVLAATGSGKSLCFQIP---ALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN 250 (774)
Q Consensus 180 ~ai~~il~------g~d~lv~apTGsGKTl~~~lp---al~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~ 250 (774)
..+..++. |+-+++.+|+|+|||...+-. +...+..+++++---++-.. .+..+|+..
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~---~a~~lGvd~---------- 435 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDI---------- 435 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH---HHHHTTCCG----------
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHH---HHHHcCCCH----------
Confidence 45777774 566889999999999643322 22356677777654333221 133444321
Q ss_pred HHHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 251 KVEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 251 ~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
-++.+..|..+..++..+..+.....+++||||....+.
T Consensus 436 ----------~~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 436 ----------DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp ----------GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ----------HHeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHhh
Confidence 123444444444444444445556789999999999885
No 254
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=82.79 E-value=3.9 Score=43.30 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=55.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEeccc------ccCcccC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGF-----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF------GMGIDKL 579 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~------~~GIDip 579 (774)
...++||.|+++.-+.++++.+.+. ++++..++|+.+..++.. .+..+..+|+|+|.-. ...++..
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~ 151 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLK 151 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcccc
Confidence 3458999999999999998888764 789999999998766544 3455778999999521 2335677
Q ss_pred CcceEEE
Q 004098 580 NVRRIIH 586 (774)
Q Consensus 580 ~V~~VI~ 586 (774)
++++||.
T Consensus 152 ~~~~vVi 158 (391)
T 1xti_A 152 HIKHFIL 158 (391)
T ss_dssp TCSEEEE
T ss_pred ccCEEEE
Confidence 8888773
No 255
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=82.75 E-value=2.9 Score=46.02 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=16.8
Q ss_pred CCEEEEecCCCchHHHHHHhh
Q 004098 189 HDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa 209 (774)
+.+++.+|+|+|||+.....+
T Consensus 50 ~gvLL~GppGtGKT~Laraia 70 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVA 70 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 569999999999998764433
No 256
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=82.67 E-value=3.6 Score=40.57 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=51.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec-----ccc-cCcccCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFG-MGIDKLN 580 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~-----a~~-~GIDip~ 580 (774)
.+.++||.++++.-+.++.+.+.. .++.+..++|+.+...+...+.. ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 345799999999999998887765 48899999999988766554432 478999994 222 2345666
Q ss_pred cceEE
Q 004098 581 VRRII 585 (774)
Q Consensus 581 V~~VI 585 (774)
+++||
T Consensus 177 ~~~lV 181 (242)
T 3fe2_A 177 TTYLV 181 (242)
T ss_dssp CCEEE
T ss_pred ccEEE
Confidence 66665
No 257
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.33 E-value=3.3 Score=49.38 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=15.7
Q ss_pred CCCEEEEecCCCchHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~ 206 (774)
..++++++|+|+|||....
T Consensus 191 ~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCCEEEECTTSCHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3579999999999997643
No 258
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=82.09 E-value=4.6 Score=38.38 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=42.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGF-----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~ 570 (774)
...++||.++++.-+.++++.+... ++.+..++|+.+..+.... + .+..+|+|+|.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~ 130 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATP 130 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECH
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCH
Confidence 3458999999999999998888653 6788999999876654322 2 35678999995
No 259
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=81.90 E-value=2.9 Score=41.11 Aligned_cols=72 Identities=14% Similarity=0.207 Sum_probs=43.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec-----cccc-CcccCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFGM-GIDKLN 580 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~-----a~~~-GIDip~ 580 (774)
...++||.++++.-+..+++.+... ++.+..++|+..... ..+.+..+..+|+|+|. .+.. .++..+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4558999999999999999988763 567888888765433 23345567789999993 2222 244555
Q ss_pred cceEE
Q 004098 581 VRRII 585 (774)
Q Consensus 581 V~~VI 585 (774)
+++||
T Consensus 174 ~~~lV 178 (237)
T 3bor_A 174 IKMFV 178 (237)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 66555
No 260
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.83 E-value=2.7 Score=44.04 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=14.8
Q ss_pred CEEEEecCCCchHHHHHH
Q 004098 190 DCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~l 207 (774)
++++.+|.|+|||.....
T Consensus 48 ~~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp CEEEECSSSSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 389999999999976543
No 261
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=80.91 E-value=2 Score=31.21 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhCCChhHHHH
Q 004098 9 DEVIAKLIEMGFDDSDITEAVETVGPSFNDAIE 41 (774)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (774)
+.-|+.|++|||+.+++.+|+..+.-...-|-.
T Consensus 10 e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~ 42 (53)
T 2d9s_A 10 SSEIERLMSQGYSYQDIQKALVIAHNNIEMAKN 42 (53)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHH
Confidence 455999999999999999999988865554433
No 262
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=80.67 E-value=3 Score=39.79 Aligned_cols=35 Identities=20% Similarity=0.063 Sum_probs=23.5
Q ss_pred CCCEEEEecCCCchHHHH-HHh--hhccCCeEEEEccc
Q 004098 188 HHDCLVLAATGSGKSLCF-QIP--ALLTGKVVVVISPL 222 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~-~lp--al~~~~~~LVvsPt 222 (774)
|+=.++.+|+|+|||.-. +.. ....+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 566788999999999321 111 12346788888775
No 263
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=80.17 E-value=5.5 Score=40.95 Aligned_cols=73 Identities=11% Similarity=0.043 Sum_probs=56.1
Q ss_pred cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHH---HHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCcc
Q 004098 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (774)
Q Consensus 212 ~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~---~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~ 288 (774)
.++.+||.++++.-+......|.+.|+.+..++++.+.... ...+..+..+|+|+|-- + ..-++...++
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v-----a---~~Gidi~~v~ 98 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV-----A---ARGLDIPQVD 98 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST-----T---TCSTTCCCCS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech-----h---hcCcccccee
Confidence 47899999999999999999999999999999999876443 34456788999999932 1 2223455677
Q ss_pred EEEE
Q 004098 289 LFAI 292 (774)
Q Consensus 289 ~iVI 292 (774)
+||.
T Consensus 99 ~VI~ 102 (300)
T 3i32_A 99 LVVH 102 (300)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7763
No 264
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=80.14 E-value=3.4 Score=48.91 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=18.3
Q ss_pred CCCEEEEecCCCchHHHHHHhhh
Q 004098 188 HHDCLVLAATGSGKSLCFQIPAL 210 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal 210 (774)
++.+++++|+|+|||......+-
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 56799999999999987654443
No 265
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=80.07 E-value=3.3 Score=48.66 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=19.0
Q ss_pred CCEEEEecCCCchHHHHHHhhhccCC
Q 004098 189 HDCLVLAATGSGKSLCFQIPALLTGK 214 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpal~~~~ 214 (774)
+-+|+.+|.|+|||+.+-..+-..+.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~elg~ 264 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999876544433333
No 266
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=79.69 E-value=4.1 Score=34.22 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=37.2
Q ss_pred hHHHHHHHHHc-CCCchHHHHHHHHhCCChhHHHHHHHcCCc
Q 004098 8 RDEVIAKLIEM-GFDDSDITEAVETVGPSFNDAIEYILNGSV 48 (774)
Q Consensus 8 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 48 (774)
.++-|..|+|| ||.-++|..|+...+=-...|++++++|..
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~ 80 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNP 80 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 36778999999 999999999999999889999999998863
No 267
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=79.57 E-value=2.7 Score=30.56 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhCCChhH
Q 004098 9 DEVIAKLIEMGFDDSDITEAVETVGPSFND 38 (774)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (774)
++-|+.|++|||+.+++.+|+..+.--..-
T Consensus 8 e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~ 37 (56)
T 2juj_A 8 SSEIENLMSQGYSYQDIQKALVIAQNNIEM 37 (56)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCSHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHhcccHHH
Confidence 567899999999999999999988765444
No 268
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=78.91 E-value=2 Score=37.40 Aligned_cols=39 Identities=15% Similarity=0.509 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHHHc
Q 004098 7 SRDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILN 45 (774)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (774)
+.-+++..|++|||+...+..|+..+|.....++++++.
T Consensus 7 ~e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~ 45 (118)
T 4ae4_A 7 SERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFA 45 (118)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 345789999999999999999999999988889999974
No 269
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=77.57 E-value=20 Score=36.97 Aligned_cols=28 Identities=32% Similarity=0.265 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCchHHHH
Q 004098 177 FQKEALSAWLAHHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 177 ~Q~~ai~~il~g~d~lv~apTGsGKTl~~ 205 (774)
-+.+.+.. +..+.++|.+|.|.|||...
T Consensus 20 ~el~~L~~-l~~~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 20 KEIEKLKG-LRAPITLVLGLRRTGKSSII 47 (357)
T ss_dssp HHHHHHHH-TCSSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHH-hcCCcEEEECCCCCCHHHHH
Confidence 33344444 43357899999999999653
No 270
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=77.47 E-value=3.4 Score=39.98 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=36.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~ 570 (774)
...++||.++++.-+.++++.+.. .++.+..++|+.+..++... +. ..+|+|+|.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp 139 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTP 139 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECH
Confidence 456899999999999999888765 37788999998765544332 22 278999984
No 271
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=77.12 E-value=3.8 Score=48.16 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=16.1
Q ss_pred CCCEEEEecCCCchHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~ 206 (774)
+.++++.+|+|+|||....
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 5689999999999997643
No 272
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=76.94 E-value=20 Score=39.41 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=19.5
Q ss_pred CEEEEecCCCchHHHHHHhh-hc--cCCeEEEE
Q 004098 190 DCLVLAATGSGKSLCFQIPA-LL--TGKVVVVI 219 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa-l~--~~~~~LVv 219 (774)
-+.+++|+|+|||......+ ++ .++.+++.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 46788999999997543322 22 35666665
No 273
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=76.88 E-value=6.6 Score=37.23 Aligned_cols=71 Identities=20% Similarity=0.193 Sum_probs=49.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc-----cc-cCcccCCcc
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGF--GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----FG-MGIDKLNVR 582 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a-----~~-~GIDip~V~ 582 (774)
...++||.|+++.-+.++++.+... .+++..++|+.+...+...+. ...+|+|+|.- +. ..++..+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3458999999999999999999875 467888999887654433332 24789999952 11 234455666
Q ss_pred eEE
Q 004098 583 RII 585 (774)
Q Consensus 583 ~VI 585 (774)
+||
T Consensus 147 ~iV 149 (207)
T 2gxq_A 147 VAV 149 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 274
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=76.65 E-value=4.9 Score=39.07 Aligned_cols=71 Identities=11% Similarity=0.186 Sum_probs=46.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc------cccCcccCCc
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCG---FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA------FGMGIDKLNV 581 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a------~~~GIDip~V 581 (774)
.+.++||.++++.-+.++++.+.. .++.+..++|+.+...+...+ . ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 455799999999999999998887 478888999987765443332 2 34789999952 2224456666
Q ss_pred ceEE
Q 004098 582 RRII 585 (774)
Q Consensus 582 ~~VI 585 (774)
++||
T Consensus 169 ~~lV 172 (228)
T 3iuy_A 169 TYLV 172 (228)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 6665
No 275
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=76.60 E-value=7.1 Score=41.63 Aligned_cols=73 Identities=8% Similarity=0.016 Sum_probs=56.1
Q ss_pred cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHH---HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCcc
Q 004098 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (774)
Q Consensus 212 ~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~---~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~ 288 (774)
.++++||.++++.-+....+.|.+.|+.+..++++.+... ....+..+..+|+|+|.- + ..-++...++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~---~~Gidip~v~ 346 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV-----A---ARGLDISNVK 346 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHH-----H---HTTSCCCCEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECCh-----h---hcCCCcccCC
Confidence 4678999999999999999999999999999999887643 334556788999999942 1 2223455667
Q ss_pred EEEE
Q 004098 289 LFAI 292 (774)
Q Consensus 289 ~iVI 292 (774)
+||.
T Consensus 347 ~Vi~ 350 (417)
T 2i4i_A 347 HVIN 350 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 276
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=76.41 E-value=2.7 Score=37.09 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhCC-ChhHHHHHHHcCC
Q 004098 9 DEVIAKLIEMGFDDSDITEAVETVGP-SFNDAIEYILNGS 47 (774)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 47 (774)
.+.+..|++|||....+..|+..+|- ....|+++++.-.
T Consensus 4 ~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~ 43 (126)
T 2lbc_A 4 ESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHM 43 (126)
T ss_dssp THHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 57889999999999999999999975 7999999998754
No 277
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=76.36 E-value=4.6 Score=39.48 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=41.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~ 570 (774)
.+.++||.++++.-+..+++.+... ++.+..++|+.+.......+ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 3457999999999999999988764 47889999987755443332 4678999995
No 278
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=76.31 E-value=1.5 Score=46.37 Aligned_cols=41 Identities=20% Similarity=0.476 Sum_probs=37.6
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhCCChhHHHHHHHcCCc
Q 004098 8 RDEVIAKLIEMGFDDSDITEAVETVGPSFNDAIEYILNGSV 48 (774)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 48 (774)
.++.|.+|++|||+-.++..|+.+++-....|++++++|-.
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip 208 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIP 208 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSST
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 47889999999999999999999999888899999999844
No 279
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=75.67 E-value=7 Score=41.20 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=20.5
Q ss_pred cCCCEEEEecCCCchHHHHHHhhhccCC
Q 004098 187 AHHDCLVLAATGSGKSLCFQIPALLTGK 214 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~lpal~~~~ 214 (774)
....+++.+|+|+|||.++...+-..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~ 77 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDV 77 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3568999999999999876554433333
No 280
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=75.52 E-value=3.3 Score=46.12 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHH-cCCCEEEEecCCCchHHH
Q 004098 173 SLKNFQKEALSAWL-AHHDCLVLAATGSGKSLC 204 (774)
Q Consensus 173 ~~r~~Q~~ai~~il-~g~d~lv~apTGsGKTl~ 204 (774)
.+.+.+..-+...+ .|..+++++|||||||..
T Consensus 244 ~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 244 TVPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 35566666665544 588899999999999964
No 281
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=75.23 E-value=1.6 Score=47.52 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=31.6
Q ss_pred CCCEEEEecCCCchHHHH--HHhhh-ccCCeEEEEccchHHHH
Q 004098 188 HHDCLVLAATGSGKSLCF--QIPAL-LTGKVVVVISPLISLMH 227 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~--~lpal-~~~~~~LVvsPt~~L~~ 227 (774)
..+++|+++||+|||... +++-+ ..+..++|+=|.-++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 579999999999999875 44443 35778889999888764
No 282
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=75.04 E-value=58 Score=32.95 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=20.7
Q ss_pred cCCCEEEEecCCCchHHHHH-Hhhhc--cCCeEEEE
Q 004098 187 AHHDCLVLAATGSGKSLCFQ-IPALL--TGKVVVVI 219 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~-lpal~--~~~~~LVv 219 (774)
.++-+.+++++|+|||.... +..+. .+++++++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 35556778999999996533 33332 35566665
No 283
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=75.02 E-value=36 Score=35.21 Aligned_cols=128 Identities=19% Similarity=0.157 Sum_probs=62.9
Q ss_pred CCCEEEEecCCCchHHHHHH-hhhc--cCCeEEEE-ccch-HHHHHHHHHH-HhcCCcEEEEcCCCChHHHHHHHHcCCc
Q 004098 188 HHDCLVLAATGSGKSLCFQI-PALL--TGKVVVVI-SPLI-SLMHDQCSKL-SKHGVTACFLGSGQPDNKVEQKALRGMY 261 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~l-pal~--~~~~~LVv-sPt~-~L~~qq~~~l-~~~gi~~~~l~~~~~~~~~~~~~~~~~~ 261 (774)
|.-+.+++|+|+|||...-. ..++ .++.+++. .++. .-..+|...+ .+.|+....-..+.....
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~---------- 198 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAA---------- 198 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHH----------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHH----------
Confidence 45678899999999965332 2222 34444443 3432 2233444433 345655443222222111
Q ss_pred eEEEEChHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCC
Q 004098 262 SIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATAT 341 (774)
Q Consensus 262 ~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~ 341 (774)
.+.+.+. .......++++||.+-+... . ......|..+.+.+. ++.+++.+.+|..
T Consensus 199 --------~v~e~l~----~~~~~~~d~vliDtaG~~~~-~---~~l~~eL~~i~ral~--------~de~llvLDa~t~ 254 (328)
T 3e70_C 199 --------VAYDAIQ----HAKARGIDVVLIDTAGRSET-N---RNLMDEMKKIARVTK--------PNLVIFVGDALAG 254 (328)
T ss_dssp --------HHHHHHH----HHHHHTCSEEEEEECCSCCT-T---TCHHHHHHHHHHHHC--------CSEEEEEEEGGGT
T ss_pred --------HHHHHHH----HHHhccchhhHHhhccchhH-H---HHHHHHHHHHHHHhc--------CCCCEEEEecHHH
Confidence 0111111 01123567888999876532 1 122333333333322 3678889999987
Q ss_pred HHHHHHHH
Q 004098 342 IQVREDIL 349 (774)
Q Consensus 342 ~~~~~~i~ 349 (774)
....+.+.
T Consensus 255 ~~~~~~~~ 262 (328)
T 3e70_C 255 NAIVEQAR 262 (328)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 76665443
No 284
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=74.47 E-value=2.9 Score=40.43 Aligned_cols=71 Identities=14% Similarity=0.132 Sum_probs=47.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC--------CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec-----cccc-Cc
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGF--------GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFGM-GI 576 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~--------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~-----a~~~-GI 576 (774)
...++||.++++.-+.++++.+.+. ++.+..++|+.+..+..+ .+ ....+|+|+|. .+.. .+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCC
Confidence 3558999999999999998877653 678888999875443211 11 34578999994 2222 24
Q ss_pred ccCCcceEE
Q 004098 577 DKLNVRRII 585 (774)
Q Consensus 577 Dip~V~~VI 585 (774)
+..++++||
T Consensus 147 ~~~~~~~lV 155 (219)
T 1q0u_A 147 DVHTAHILV 155 (219)
T ss_dssp CGGGCCEEE
T ss_pred CcCcceEEE
Confidence 455566555
No 285
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=74.05 E-value=5.6 Score=27.77 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhCCChhH
Q 004098 9 DEVIAKLIEMGFDDSDITEAVETVGPSFND 38 (774)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (774)
+.-|+.|+.|||+++++.+|+..+.-...-
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~ 34 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQNNIEM 34 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhccHHH
Confidence 456899999999999999999988765443
No 286
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=73.51 E-value=6.8 Score=43.38 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=16.6
Q ss_pred CCEEEEecCCCchHHHHHHhh
Q 004098 189 HDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa 209 (774)
+.+++.+|+|+|||+.....+
T Consensus 65 ~GvLL~GppGtGKTtLaraIa 85 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVA 85 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 458999999999998765443
No 287
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=73.11 E-value=2.7 Score=49.36 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=22.2
Q ss_pred CCCEEEEecCCCchHHHHHHhhhccCCeEEEE
Q 004098 188 HHDCLVLAATGSGKSLCFQIPALLTGKVVVVI 219 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpal~~~~~~LVv 219 (774)
.+-+|+.+|.|+|||+.+-..+-..+...+.+
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v 542 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCEEEEC
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCceEEe
Confidence 35789999999999987755554444443333
No 288
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=72.99 E-value=4.9 Score=43.66 Aligned_cols=55 Identities=13% Similarity=0.042 Sum_probs=47.0
Q ss_pred CCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEEEECh
Q 004098 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCP 268 (774)
Q Consensus 213 ~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TP 268 (774)
++.+||++|++.-++..++.|.+.++++..+++. ........+..+..+|+|+|-
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~-~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK-TFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT-THHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc-cHHHHHHhhcCCCCeEEEECc
Confidence 6789999999999999999999999999999876 344556667788999999994
No 289
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=72.30 E-value=3.6 Score=44.83 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=42.1
Q ss_pred cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEEEECh
Q 004098 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCP 268 (774)
Q Consensus 212 ~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TP 268 (774)
.++.+||++|++.-+...++.|.+.++++..+++. ........+..+..+|+|+|.
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT~ 231 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK-TFEREYPTIKQKKPDFILATD 231 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS-SCC--------CCCSEEEESS
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch-hHHHHHhhhcCCCceEEEECC
Confidence 36789999999999999999999999999999884 344556667788899999994
No 290
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=71.91 E-value=12 Score=37.31 Aligned_cols=71 Identities=15% Similarity=0.097 Sum_probs=50.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec------cc-ccCcccCC
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI------AF-GMGIDKLN 580 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~------a~-~~GIDip~ 580 (774)
+.++||.++++.-+.++++.+.+ .++.+..++|+.....+... +..+ .+|+|+|. +. ..+++..+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 45799999999999999988876 36778889998876654433 3334 78999994 21 12456677
Q ss_pred cceEEE
Q 004098 581 VRRIIH 586 (774)
Q Consensus 581 V~~VI~ 586 (774)
+++||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777663
No 291
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=71.77 E-value=4.2 Score=34.59 Aligned_cols=37 Identities=8% Similarity=0.231 Sum_probs=33.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLP 547 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~ 547 (774)
+..+++|||.+-..+...+..|...|+.+..+.||+.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 5568999999988899999999999999999999864
No 292
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=71.40 E-value=4.3 Score=33.87 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=32.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLP 547 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~ 547 (774)
+..+++|||.+-..+...+..|...|+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4568999999999999999999999999999998864
No 293
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=70.68 E-value=81 Score=33.84 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=29.7
Q ss_pred CCCEEEEecCCCchHHHHHHhh-hc--cCCeEEEEc--cchHHHHHHHHHHHh-cCCcE
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA-LL--TGKVVVVIS--PLISLMHDQCSKLSK-HGVTA 240 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa-l~--~~~~~LVvs--Pt~~L~~qq~~~l~~-~gi~~ 240 (774)
++-+++++++|+|||.+....+ .+ .+++++++. +.+..+.+|...+.. .++.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v 156 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV 156 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE
Confidence 3456778999999996543322 22 355666654 444555555444432 45544
No 294
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=70.46 E-value=14 Score=38.95 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=52.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc-----c-ccCcccCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----F-GMGIDKLN 580 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a-----~-~~GIDip~ 580 (774)
...++||.|+++.-+.++++.+.+ .++.+..++|+.+..+....+. ..+|+|+|.- + ...++..+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456899999999999998888765 4788999999998776555443 4679999942 1 22355667
Q ss_pred cceEEE
Q 004098 581 VRRIIH 586 (774)
Q Consensus 581 V~~VI~ 586 (774)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777773
No 295
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=70.43 E-value=9 Score=39.82 Aligned_cols=73 Identities=11% Similarity=0.011 Sum_probs=56.3
Q ss_pred cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHH---HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCcc
Q 004098 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (774)
Q Consensus 212 ~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~---~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~ 288 (774)
.+.++||.++++.-+....+.|.+.++.+..++++.+... ....+..+..+|+|+|.- + ..-++...++
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~---~~Gid~~~~~ 308 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV-----M---SRGIDVNDLN 308 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT-----H---HHHCCCSCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----h---hcCCCcccCC
Confidence 4678999999999999999999999999999999887643 334556788899999932 1 2233456677
Q ss_pred EEEE
Q 004098 289 LFAI 292 (774)
Q Consensus 289 ~iVI 292 (774)
+||.
T Consensus 309 ~Vi~ 312 (367)
T 1hv8_A 309 CVIN 312 (367)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7775
No 296
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=70.26 E-value=8.4 Score=40.90 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=55.8
Q ss_pred cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHH---HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCcc
Q 004098 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (774)
Q Consensus 212 ~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~---~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~ 288 (774)
.++++||.++++.-+......|.+.++.+..++++.+... ....+..+..+|+|+|.- + ..-++...++
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~---~~Gidip~~~ 336 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV-----C---ARGIDVEQVS 336 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-----G---TSSCCCTTEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc-----c---ccCCCccCCC
Confidence 4689999999999999999999999999999999987643 334556788899999942 1 1223445677
Q ss_pred EEEE
Q 004098 289 LFAI 292 (774)
Q Consensus 289 ~iVI 292 (774)
+||.
T Consensus 337 ~Vi~ 340 (412)
T 3fht_A 337 VVIN 340 (412)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7663
No 297
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=70.25 E-value=31 Score=33.59 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.3
Q ss_pred CEEEEecCCCchHHHHH
Q 004098 190 DCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~ 206 (774)
++++.++.|.|||...+
T Consensus 8 ~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 58889999999997644
No 298
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=70.17 E-value=13 Score=36.68 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=41.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~ 570 (774)
..++||.|+++.-+.++++.+.. .++.+..++|+.+.......+ ....+|+|+|.
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp 158 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATP 158 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECH
Confidence 35899999999999998888765 357788899988765543322 34678999995
No 299
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=70.16 E-value=7.5 Score=45.62 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.1
Q ss_pred CEEEEecCCCchHHHHHH
Q 004098 190 DCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~l 207 (774)
.+++.+|||+|||..+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~a 540 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARA 540 (758)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 499999999999987543
No 300
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=69.68 E-value=9.4 Score=40.44 Aligned_cols=57 Identities=7% Similarity=0.082 Sum_probs=48.0
Q ss_pred cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHH---HHHHHHcCCceEEEECh
Q 004098 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCP 268 (774)
Q Consensus 212 ~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~---~~~~~~~~~~~Ilv~TP 268 (774)
..+++||.++++.-+....+.|.+.|+.+..++++.+... ....+..+..+|+|+|.
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD 316 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Confidence 4679999999999999999999999999999999887643 34455678889999993
No 301
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=68.89 E-value=9.7 Score=40.05 Aligned_cols=76 Identities=9% Similarity=0.081 Sum_probs=57.3
Q ss_pred cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHH---HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCcc
Q 004098 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (774)
Q Consensus 212 ~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~---~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~ 288 (774)
..+++||.++++.-+....+.|.+.++.+..++++.+... ....+..+..+|+|+|.- + ..-++...++
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~---~~Gidip~~~ 313 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV-----L---ARGIDIPTVS 313 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG-----G---SSSCCCTTEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh-----h---hcCCCcccCC
Confidence 4689999999999999999999999999999999887643 344556788899999942 1 1223445677
Q ss_pred EEEEecc
Q 004098 289 LFAIDEV 295 (774)
Q Consensus 289 ~iVIDEa 295 (774)
+||.-..
T Consensus 314 ~Vi~~~~ 320 (395)
T 3pey_A 314 MVVNYDL 320 (395)
T ss_dssp EEEESSC
T ss_pred EEEEcCC
Confidence 7776443
No 302
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=68.86 E-value=4.4 Score=34.24 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=31.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASL 546 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l 546 (774)
++.+++|||.+-..+...+..|.+.|+.+..+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 466899999998889999999999999988888876
No 303
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=68.46 E-value=5.5 Score=37.08 Aligned_cols=14 Identities=29% Similarity=0.247 Sum_probs=11.6
Q ss_pred EEEEecCCCchHHH
Q 004098 191 CLVLAATGSGKSLC 204 (774)
Q Consensus 191 ~lv~apTGsGKTl~ 204 (774)
+.+.++.|+|||..
T Consensus 7 i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 7 WQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56788999999964
No 304
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=67.88 E-value=19 Score=39.84 Aligned_cols=107 Identities=15% Similarity=0.097 Sum_probs=54.3
Q ss_pred CEEEEecCCCchHHHHHHhh--h-ccCCeEEEEcc--chHHHHHHHHHH-HhcCCcEEEEcCCCChHHH----HHHHHcC
Q 004098 190 DCLVLAATGSGKSLCFQIPA--L-LTGKVVVVISP--LISLMHDQCSKL-SKHGVTACFLGSGQPDNKV----EQKALRG 259 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa--l-~~~~~~LVvsP--t~~L~~qq~~~l-~~~gi~~~~l~~~~~~~~~----~~~~~~~ 259 (774)
.+++++++|+|||....-.+ + ..+.++++|.. .++.+.+|.... ...++.+.....+...... ...+...
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~~ 182 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNE 182 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHHC
Confidence 47778999999996543222 2 23566666654 345555554443 3356765543333332211 1222224
Q ss_pred Cce-EEEEChHHHH---HHHHHHHHHHH--hcCccEEEEeccc
Q 004098 260 MYS-IIYVCPETVI---RLIKPLQRLAE--SRGIALFAIDEVH 296 (774)
Q Consensus 260 ~~~-Ilv~TPe~l~---~ll~~~~~~~~--~~~i~~iVIDEaH 296 (774)
+++ |+|=||+++. .+...+..... .....++|+|=.+
T Consensus 183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~ 225 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASI 225 (504)
T ss_dssp TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTC
T ss_pred CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccc
Confidence 455 5666888663 23322222221 2344577887433
No 305
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=67.32 E-value=4.9 Score=33.68 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=32.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLP 547 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~ 547 (774)
+..++||||.+-..+...+..|...|+.+..+.||+.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4568999999988899999999999999999988854
No 306
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=66.06 E-value=7.3 Score=46.40 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=14.7
Q ss_pred CEEEEecCCCchHHHHH
Q 004098 190 DCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~ 206 (774)
.+++.+|||+|||..+.
T Consensus 590 ~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEBSCSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999998754
No 307
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=66.06 E-value=6.1 Score=38.15 Aligned_cols=33 Identities=24% Similarity=0.102 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHcCCCEEEEecCCCchHHHHH
Q 004098 174 LKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 174 ~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~ 206 (774)
-+..|..++..+-.|.-+.+++|.|+|||...-
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHHH
Confidence 344577888888889989999999999997543
No 308
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=65.74 E-value=12 Score=39.89 Aligned_cols=73 Identities=11% Similarity=0.080 Sum_probs=55.2
Q ss_pred cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHH---HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCcc
Q 004098 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (774)
Q Consensus 212 ~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~---~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~ 288 (774)
..+++||.++++.-+....+.|.+.|+.+..++++.+..+ ....+..+..+|+|+|.- + ..-++...++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~---~~Gidi~~v~ 346 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV-----W---ARGLDVPQVS 346 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG-----G---SSSCCCTTEE
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh-----h---hCcCCcccCC
Confidence 4579999999999999999999999999999999887643 334556788899999942 1 1122345566
Q ss_pred EEEE
Q 004098 289 LFAI 292 (774)
Q Consensus 289 ~iVI 292 (774)
+||.
T Consensus 347 ~Vi~ 350 (410)
T 2j0s_A 347 LIIN 350 (410)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 309
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=65.44 E-value=6.6 Score=32.22 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=31.3
Q ss_pred CcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCC
Q 004098 513 GLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLP 547 (774)
Q Consensus 513 ~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~ 547 (774)
.+++|||.+-..+...+..|...|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988899999999999999888888864
No 310
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=64.39 E-value=4.5 Score=42.64 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=20.7
Q ss_pred HHHHHHHcCCCEEE--EecCCCchHHHHH
Q 004098 180 EALSAWLAHHDCLV--LAATGSGKSLCFQ 206 (774)
Q Consensus 180 ~ai~~il~g~d~lv--~apTGsGKTl~~~ 206 (774)
..+..+++|.|+.| -++||||||.+..
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 35677888998554 5699999998753
No 311
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=64.33 E-value=7.7 Score=39.73 Aligned_cols=69 Identities=14% Similarity=0.059 Sum_probs=47.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEeccc------c-cCccc
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGF-----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF------G-MGIDK 578 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~------~-~GIDi 578 (774)
...++||.++|+.-+.++++.+... ++.+..++++.....+. ....+|||+|.-- . ..+++
T Consensus 161 ~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l 233 (300)
T 3fmo_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDP 233 (300)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCG
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCCh
Confidence 3447999999999999988887753 56777777776533211 4556899999532 1 24677
Q ss_pred CCcceEEE
Q 004098 579 LNVRRIIH 586 (774)
Q Consensus 579 p~V~~VI~ 586 (774)
.++++||.
T Consensus 234 ~~l~~lVl 241 (300)
T 3fmo_B 234 KKIKVFVL 241 (300)
T ss_dssp GGCSEEEE
T ss_pred hhceEEEE
Confidence 77887773
No 312
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=63.94 E-value=5.6 Score=41.24 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=19.6
Q ss_pred HHHHcCCCEEEEecCCCchHHHHHH
Q 004098 183 SAWLAHHDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 183 ~~il~g~d~lv~apTGsGKTl~~~l 207 (774)
..+..+.++++.+|+|+|||.....
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~~ 65 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVNT 65 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHHH
Confidence 3344688999999999999976543
No 313
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=66.55 E-value=1.6 Score=40.66 Aligned_cols=55 Identities=15% Similarity=0.287 Sum_probs=44.1
Q ss_pred CCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHH---HHHHHHcCCceEEEEC
Q 004098 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVC 267 (774)
Q Consensus 213 ~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~---~~~~~~~~~~~Ilv~T 267 (774)
++++||.++++.-+......|.+.|+.+..++++.+... ....+..+..+|+|+|
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT 87 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 87 (170)
Confidence 467899999999999999999999999999998876533 2334456778899998
No 314
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=62.49 E-value=23 Score=37.51 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=52.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec-----cccc-CcccCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFGM-GIDKLN 580 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~-----a~~~-GIDip~ 580 (774)
...++||.++++.-+.++++.+... +..+..++|+.....+ .+.+..+..+|+|+|. .+.. .++..+
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 5568999999999999998888763 6778888887765443 3455667889999994 2222 355666
Q ss_pred cceEE
Q 004098 581 VRRII 585 (774)
Q Consensus 581 V~~VI 585 (774)
+++||
T Consensus 184 ~~~vV 188 (414)
T 3eiq_A 184 IKMFV 188 (414)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 77776
No 315
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=62.45 E-value=13 Score=38.56 Aligned_cols=21 Identities=19% Similarity=0.127 Sum_probs=16.2
Q ss_pred CEEEEecCCCchHHHHHHhhh
Q 004098 190 DCLVLAATGSGKSLCFQIPAL 210 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpal 210 (774)
-+++++|||+|||......+-
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999987654443
No 316
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=62.41 E-value=8.3 Score=44.46 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=46.2
Q ss_pred CCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEEEECh
Q 004098 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCP 268 (774)
Q Consensus 213 ~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TP 268 (774)
++.+||++|++.-++..+..|.+.++++..+++. ........+..+..+|+|+|-
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd 464 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD 464 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS-SHHHHGGGGGTCCCSEEEECG
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH-HHHHHHHHHHCCCceEEEECc
Confidence 6789999999999999999999999999999884 344445556678899999993
No 317
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=61.69 E-value=1e+02 Score=31.36 Aligned_cols=57 Identities=16% Similarity=0.089 Sum_probs=30.0
Q ss_pred CccEEEEecccccccCCCCcHHHHHHHHHHHHHhccccccccc--CCCCEEEEeccCCHHHHHHHHH
Q 004098 286 GIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLK--FDIPLMALTATATIQVREDILK 350 (774)
Q Consensus 286 ~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~--~~~~il~lTAT~~~~~~~~i~~ 350 (774)
..+.+++|-+.+... ....+..+...+..+. ..+. |...++.|.||....+.+.+..
T Consensus 184 ~~d~~llDt~G~~~~----~~~~~~eLs~~r~~ia----Ral~~~P~~~lLvLDa~t~~~~~~~~~~ 242 (304)
T 1rj9_A 184 GYDLLFVDTAGRLHT----KHNLMEELKKVKRAIA----KADPEEPKEVWLVLDAVTGQNGLEQAKK 242 (304)
T ss_dssp TCSEEEECCCCCCTT----CHHHHHHHHHHHHHHH----HHCTTCCSEEEEEEETTBCTHHHHHHHH
T ss_pred CCCEEEecCCCCCCc----hHHHHHHHHHHHHHHH----HhhcCCCCeEEEEEcHHHHHHHHHHHHH
Confidence 467889998876521 2333344443332211 0111 1223678888887776665543
No 318
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=61.45 E-value=8.1 Score=37.24 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC----CCEEEEecCCCchHHHH
Q 004098 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSAWLAH----HDCLVLAATGSGKSLCF 205 (774)
Q Consensus 156 ~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~il~g----~d~lv~apTGsGKTl~~ 205 (774)
.|. .+.+.|+ +-|+ .+..+ ..++..++.+ +.+++.+|.|+|||..+
T Consensus 26 ~w~-~I~~~l~-yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 26 DWR-PIVQFLR-YQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp CSH-HHHHHHH-HTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred CHH-HHHHHHH-HcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 444 5677777 4354 35555 5666677765 24888999999999654
No 319
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=61.35 E-value=32 Score=35.02 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=28.9
Q ss_pred CCEEEEecCCCchHHHHH-Hhhhc--cCCeEEEEc--cchHHHHHHHHHHH-hcCCcEE
Q 004098 189 HDCLVLAATGSGKSLCFQ-IPALL--TGKVVVVIS--PLISLMHDQCSKLS-KHGVTAC 241 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~-lpal~--~~~~~LVvs--Pt~~L~~qq~~~l~-~~gi~~~ 241 (774)
+-+++++++|+|||.... +.... .+++++++. |.++.+.+|...+. ..++.+.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~ 157 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVY 157 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEE
Confidence 346678899999996543 32222 355565553 23444444444333 3566543
No 320
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=61.05 E-value=4.6 Score=39.72 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=46.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc-----ccc---CcccC
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----FGM---GIDKL 579 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a-----~~~---GIDip 579 (774)
+.++||.++++.-+.++++.+.+. ++.+..++++..... .......+..+|+|+|.- +.. .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 447999999999999999988764 677777776532211 112233567789999932 111 35566
Q ss_pred CcceEE
Q 004098 580 NVRRII 585 (774)
Q Consensus 580 ~V~~VI 585 (774)
++++||
T Consensus 175 ~~~~lV 180 (245)
T 3dkp_A 175 SVEWLV 180 (245)
T ss_dssp TCCEEE
T ss_pred cCcEEE
Confidence 666655
No 321
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=60.92 E-value=16 Score=39.46 Aligned_cols=72 Identities=10% Similarity=0.012 Sum_probs=54.2
Q ss_pred CCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHH---HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccE
Q 004098 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIAL 289 (774)
Q Consensus 213 ~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~---~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~ 289 (774)
...+||.++++.-+....+.|.+.|+.+..++++.+..+ ....+..+..+|+|+|.- + ..-++..++++
T Consensus 300 ~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v-----~---~rGlDi~~v~~ 371 (434)
T 2db3_A 300 ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV-----A---SRGLDIKNIKH 371 (434)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGG-----G---TSSCCCTTCCE
T ss_pred CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchh-----h---hCCCCcccCCE
Confidence 345999999999999999999999999999999887643 334556788999999952 1 12234455676
Q ss_pred EEE
Q 004098 290 FAI 292 (774)
Q Consensus 290 iVI 292 (774)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 322
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=60.83 E-value=6.7 Score=42.33 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHc--CCCEEEEecCCCchHHH
Q 004098 174 LKNFQKEALSAWLA--HHDCLVLAATGSGKSLC 204 (774)
Q Consensus 174 ~r~~Q~~ai~~il~--g~d~lv~apTGsGKTl~ 204 (774)
+.+-+..++..++. |.-++|++|||||||..
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 34556677777664 34578999999999964
No 323
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=60.80 E-value=16 Score=41.09 Aligned_cols=75 Identities=11% Similarity=0.080 Sum_probs=56.8
Q ss_pred cCCeEEEEccchHHHHHHHHHHHhc---CCcEEEEcCCCChHH---HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhc
Q 004098 212 TGKVVVVISPLISLMHDQCSKLSKH---GVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESR 285 (774)
Q Consensus 212 ~~~~~LVvsPt~~L~~qq~~~l~~~---gi~~~~l~~~~~~~~---~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~ 285 (774)
.+.++||.++++.-+...+..|.+. ++.+..++++.+... ....+..+..+|+|+|-- + ..-++..
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~-----~---~~GiDip 358 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----G---ARGMDFP 358 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----G---TSSCCCT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch-----h---hcCCCcc
Confidence 3679999999999999999999886 899999999887643 345566788999999943 1 1223455
Q ss_pred CccEEEEec
Q 004098 286 GIALFAIDE 294 (774)
Q Consensus 286 ~i~~iVIDE 294 (774)
.+++||.-.
T Consensus 359 ~v~~VI~~~ 367 (579)
T 3sqw_A 359 NVHEVLQIG 367 (579)
T ss_dssp TCCEEEEES
T ss_pred cCCEEEEcC
Confidence 677877543
No 324
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=60.46 E-value=5.1 Score=41.78 Aligned_cols=20 Identities=30% Similarity=0.210 Sum_probs=15.4
Q ss_pred CCEEEEecCCCchHHHHHHh
Q 004098 189 HDCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lp 208 (774)
+-++|++|||+|||......
T Consensus 41 ~lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 45788999999999765433
No 325
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=60.37 E-value=17 Score=40.68 Aligned_cols=74 Identities=11% Similarity=0.085 Sum_probs=56.0
Q ss_pred cCCeEEEEccchHHHHHHHHHHHhc---CCcEEEEcCCCChHH---HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhc
Q 004098 212 TGKVVVVISPLISLMHDQCSKLSKH---GVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESR 285 (774)
Q Consensus 212 ~~~~~LVvsPt~~L~~qq~~~l~~~---gi~~~~l~~~~~~~~---~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~ 285 (774)
.+..+||.++++.-+...+..|.+. ++.+..++++.+... ....+..+..+|+|+|.- + ..-++..
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~---~~GiDip 409 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----G---ARGMDFP 409 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----G---TSSCCCT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch-----h---hcCCCcc
Confidence 4679999999999999999999886 899999999887643 345566788999999953 1 1223445
Q ss_pred CccEEEEe
Q 004098 286 GIALFAID 293 (774)
Q Consensus 286 ~i~~iVID 293 (774)
.+++||.-
T Consensus 410 ~v~~VI~~ 417 (563)
T 3i5x_A 410 NVHEVLQI 417 (563)
T ss_dssp TCCEEEEE
T ss_pred cCCEEEEE
Confidence 57777753
No 326
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=60.28 E-value=6 Score=41.09 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCE--EEEecCCCchHHHHH
Q 004098 180 EALSAWLAHHDC--LVLAATGSGKSLCFQ 206 (774)
Q Consensus 180 ~ai~~il~g~d~--lv~apTGsGKTl~~~ 206 (774)
..+..+++|.|+ ++.++||||||.+..
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 68 KIVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred hhHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 355667789985 446699999998754
No 327
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=60.09 E-value=24 Score=40.57 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=60.8
Q ss_pred cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHH---HHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCcc
Q 004098 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (774)
Q Consensus 212 ~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~---~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~ 288 (774)
.+.++||.++|+.-+......|.+.|+++..++++.+.... ...+..+..+|+|+|-- + ..-++...++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~-----l---~~GlDip~v~ 515 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL-----L---REGLDIPEVS 515 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC-----C---STTCCCTTEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch-----h---hCCcccCCCC
Confidence 57799999999999999999999999999999987765433 33355688999999842 1 2223456788
Q ss_pred EEEEeccccc
Q 004098 289 LFAIDEVHCV 298 (774)
Q Consensus 289 ~iVIDEaH~l 298 (774)
+||+=+++..
T Consensus 516 lVi~~d~d~~ 525 (661)
T 2d7d_A 516 LVAILDADKE 525 (661)
T ss_dssp EEEETTTTCC
T ss_pred EEEEeCcccc
Confidence 9999888764
No 328
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=59.53 E-value=24 Score=40.46 Aligned_cols=79 Identities=18% Similarity=0.170 Sum_probs=59.9
Q ss_pred cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHH---HHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCcc
Q 004098 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKV---EQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIA 288 (774)
Q Consensus 212 ~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~---~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~ 288 (774)
.+.++||.++|+.-+......|.+.|+++..++++.+.... ...+..+.++|+|+|-- + ..-++...++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~-----l---~~GlDip~v~ 509 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-----L---REGLDIPEVS 509 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-----C---CTTCCCTTEE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh-----h---hcCccCCCCC
Confidence 57899999999999999999999999999999987765433 33456688999999832 1 1223455688
Q ss_pred EEEEeccccc
Q 004098 289 LFAIDEVHCV 298 (774)
Q Consensus 289 ~iVIDEaH~l 298 (774)
+||+=+++..
T Consensus 510 lVI~~d~d~~ 519 (664)
T 1c4o_A 510 LVAILDADKE 519 (664)
T ss_dssp EEEETTTTSC
T ss_pred EEEEeCCccc
Confidence 8888777654
No 329
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=59.50 E-value=6.3 Score=41.55 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=20.2
Q ss_pred HHHHHHHcCCCEEE--EecCCCchHHHH
Q 004098 180 EALSAWLAHHDCLV--LAATGSGKSLCF 205 (774)
Q Consensus 180 ~ai~~il~g~d~lv--~apTGsGKTl~~ 205 (774)
..+..+++|.|+.| .++||+|||.+.
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 45667788998654 569999999875
No 330
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=59.26 E-value=6 Score=41.45 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=19.3
Q ss_pred HHHHHHcCCCEE--EEecCCCchHHHH
Q 004098 181 ALSAWLAHHDCL--VLAATGSGKSLCF 205 (774)
Q Consensus 181 ai~~il~g~d~l--v~apTGsGKTl~~ 205 (774)
.|..+++|.|+. +.++||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 556677899864 4569999999875
No 331
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=59.09 E-value=1.7e+02 Score=30.40 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=20.7
Q ss_pred CCCEEEEecCCCchHHHHH-Hhhhc--cCCeEEEEc
Q 004098 188 HHDCLVLAATGSGKSLCFQ-IPALL--TGKVVVVIS 220 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~-lpal~--~~~~~LVvs 220 (774)
|.-+.+++|+|+|||...- |..++ .++.+++..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 4557789999999997543 22222 355555553
No 332
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=58.84 E-value=6.4 Score=43.61 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=22.3
Q ss_pred HHHHHHcCCCEEEEecCCCchHHHHHHhh
Q 004098 181 ALSAWLAHHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 181 ai~~il~g~d~lv~apTGsGKTl~~~lpa 209 (774)
++..+..+.++++.+|+|+|||..+...+
T Consensus 34 l~~al~~~~~VLL~GpPGtGKT~LAraLa 62 (500)
T 3nbx_X 34 CLLAALSGESVFLLGPPGIAKSLIARRLK 62 (500)
T ss_dssp HHHHHHHTCEEEEECCSSSSHHHHHHHGG
T ss_pred HHHHHhcCCeeEeecCchHHHHHHHHHHH
Confidence 44445568999999999999998765444
No 333
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=58.57 E-value=6.6 Score=41.55 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCEEE--EecCCCchHHHH
Q 004098 180 EALSAWLAHHDCLV--LAATGSGKSLCF 205 (774)
Q Consensus 180 ~ai~~il~g~d~lv--~apTGsGKTl~~ 205 (774)
..+..+++|.|+.| .++||||||.+.
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 34566778998554 569999999875
No 334
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=58.56 E-value=4.7 Score=35.41 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=32.3
Q ss_pred CC-CcEEEEe-CchHHHHHHHHHHHhCCCceEEecCCCCH
Q 004098 511 ED-GLTIIYV-PTRKETLSIAKYLCGFGVKAAAYNASLPK 548 (774)
Q Consensus 511 ~~-~~~IIF~-~sr~~~~~l~~~L~~~g~~~~~~h~~l~~ 548 (774)
+. .++|||| .+-..+...+..|...|+.+..|.||+..
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 44 7899999 57777889999999999999999998753
No 335
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=58.49 E-value=6.7 Score=41.13 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=19.4
Q ss_pred HHHHHHcCCCEEE--EecCCCchHHHH
Q 004098 181 ALSAWLAHHDCLV--LAATGSGKSLCF 205 (774)
Q Consensus 181 ai~~il~g~d~lv--~apTGsGKTl~~ 205 (774)
.+..+++|.|+.| .++||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 5566778998644 569999999874
No 336
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=58.40 E-value=37 Score=28.26 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=45.1
Q ss_pred EEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceE
Q 004098 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEV 565 (774)
Q Consensus 515 ~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~v 565 (774)
.+||...-.-..++...++..|.++..++++...+.|...++.|....+.|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 578888888899999999999999999999999999999999998765544
No 337
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=58.36 E-value=6.8 Score=40.80 Aligned_cols=26 Identities=15% Similarity=0.384 Sum_probs=20.9
Q ss_pred HHHHHHHcCCCEEE--EecCCCchHHHH
Q 004098 180 EALSAWLAHHDCLV--LAATGSGKSLCF 205 (774)
Q Consensus 180 ~ai~~il~g~d~lv--~apTGsGKTl~~ 205 (774)
..+..+++|.|+.| .++||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 47788889998544 669999999875
No 338
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=58.34 E-value=6.7 Score=41.27 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCE--EEEecCCCchHHHH
Q 004098 180 EALSAWLAHHDC--LVLAATGSGKSLCF 205 (774)
Q Consensus 180 ~ai~~il~g~d~--lv~apTGsGKTl~~ 205 (774)
..+..+++|.|+ ++.++||+|||.+.
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 356677889986 44669999999875
No 339
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=58.33 E-value=56 Score=32.92 Aligned_cols=33 Identities=27% Similarity=0.146 Sum_probs=20.4
Q ss_pred CCEEEEecCCCchHHHHHHhhhccCCeEEEEcc
Q 004098 189 HDCLVLAATGSGKSLCFQIPALLTGKVVVVISP 221 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsP 221 (774)
.-+++++|.|+|||......+-......++|+.
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 347889999999997654333222224455654
No 340
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=58.16 E-value=9.6 Score=41.56 Aligned_cols=55 Identities=16% Similarity=0.069 Sum_probs=45.9
Q ss_pred CCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEEEECh
Q 004098 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCP 268 (774)
Q Consensus 213 ~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TP 268 (774)
.+.+||.+|++.-++.....|.+.|+.+..+++... ......+..+..+|+|+|-
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~ 242 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD 242 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH-HHHGGGGGSSCCSEEEECG
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH-HHHHHhhccCCceEEEECC
Confidence 678999999999999999999999999998887654 3444555678899999994
No 341
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=58.08 E-value=6.9 Score=41.09 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCEEE--EecCCCchHHHH
Q 004098 180 EALSAWLAHHDCLV--LAATGSGKSLCF 205 (774)
Q Consensus 180 ~ai~~il~g~d~lv--~apTGsGKTl~~ 205 (774)
..+..+++|.|+.| .++||||||.+.
T Consensus 80 plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 80 PLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 34566778988554 569999999875
No 342
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=58.03 E-value=6.9 Score=41.36 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCEE--EEecCCCchHHHH
Q 004098 180 EALSAWLAHHDCL--VLAATGSGKSLCF 205 (774)
Q Consensus 180 ~ai~~il~g~d~l--v~apTGsGKTl~~ 205 (774)
..+..+++|.|+. +.++||||||.+.
T Consensus 75 plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 75 SIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3556677899854 4669999999875
No 343
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=57.89 E-value=6.9 Score=41.06 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=20.2
Q ss_pred HHHHHHHcCCCEEE--EecCCCchHHHH
Q 004098 180 EALSAWLAHHDCLV--LAATGSGKSLCF 205 (774)
Q Consensus 180 ~ai~~il~g~d~lv--~apTGsGKTl~~ 205 (774)
..+..+++|.|+.| .++||+|||.+.
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 68 PIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 45677788998544 669999999875
No 344
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=57.69 E-value=7 Score=41.36 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=20.1
Q ss_pred HHHHHHHcCCCEEE--EecCCCchHHHH
Q 004098 180 EALSAWLAHHDCLV--LAATGSGKSLCF 205 (774)
Q Consensus 180 ~ai~~il~g~d~lv--~apTGsGKTl~~ 205 (774)
..+..+++|.|+.| .++||||||.+.
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 45667788998554 569999999875
No 345
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=57.23 E-value=6.6 Score=41.42 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=20.1
Q ss_pred HHHHHHHcCCCEE--EEecCCCchHHHHH
Q 004098 180 EALSAWLAHHDCL--VLAATGSGKSLCFQ 206 (774)
Q Consensus 180 ~ai~~il~g~d~l--v~apTGsGKTl~~~ 206 (774)
..+..+++|.|+. +.++||||||.+..
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 3556677899854 46699999998753
No 346
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=57.14 E-value=7.4 Score=39.58 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=17.6
Q ss_pred CCCEEEEecCCCchHHHHHHhh
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa 209 (774)
...+++.+|+|+|||......+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la 71 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLA 71 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 5789999999999997654333
No 347
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=56.98 E-value=7.1 Score=38.71 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=16.7
Q ss_pred CCCEEEEecCCCchHHHHHHh
Q 004098 188 HHDCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lp 208 (774)
.+.+++.+|+|+|||......
T Consensus 45 ~~~vll~G~~GtGKT~la~~l 65 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAI 65 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHH
Confidence 356999999999999865443
No 348
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=56.84 E-value=7.6 Score=41.67 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=20.9
Q ss_pred HHHHHHcCCCEEE--EecCCCchHHHHH
Q 004098 181 ALSAWLAHHDCLV--LAATGSGKSLCFQ 206 (774)
Q Consensus 181 ai~~il~g~d~lv--~apTGsGKTl~~~ 206 (774)
.|..+++|.|+.| .++||||||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 6778889998654 5699999998753
No 349
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=56.80 E-value=7.4 Score=41.71 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=20.1
Q ss_pred HHHHHHHcCCCEE--EEecCCCchHHHHH
Q 004098 180 EALSAWLAHHDCL--VLAATGSGKSLCFQ 206 (774)
Q Consensus 180 ~ai~~il~g~d~l--v~apTGsGKTl~~~ 206 (774)
..|..+++|.|+. +.++||||||.+..
T Consensus 145 plV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 145 PLVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 3556678898854 46699999998753
No 350
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=56.66 E-value=6.8 Score=41.38 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=17.9
Q ss_pred HHcCCCEEEEecCCCchHHHHH
Q 004098 185 WLAHHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 185 il~g~d~lv~apTGsGKTl~~~ 206 (774)
+-.|+.+++++|||+|||...-
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMK 193 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHHH
Confidence 3468899999999999996543
No 351
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=56.61 E-value=6.8 Score=41.24 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCEEE--EecCCCchHHHH
Q 004098 180 EALSAWLAHHDCLV--LAATGSGKSLCF 205 (774)
Q Consensus 180 ~ai~~il~g~d~lv--~apTGsGKTl~~ 205 (774)
..+..+++|.|+.| .++||||||.+.
T Consensus 96 plv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 96 PILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEeCCCCCCceeee
Confidence 35566778998644 569999999875
No 352
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=56.51 E-value=6.7 Score=40.45 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=14.0
Q ss_pred CEEEEecCCCchHHHHHH
Q 004098 190 DCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~l 207 (774)
-++|.+|||+|||....-
T Consensus 5 ~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHH
Confidence 367789999999976543
No 353
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=56.50 E-value=6.6 Score=40.43 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=13.1
Q ss_pred EEEEecCCCchHHHHH
Q 004098 191 CLVLAATGSGKSLCFQ 206 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~ 206 (774)
++|++|||+|||..+.
T Consensus 13 i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 13 IFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCccCHHHHHH
Confidence 5778999999997653
No 354
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=56.39 E-value=15 Score=44.66 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=55.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh----CCC----ceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc-cccCcc-cCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCG----FGV----KAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-FGMGID-KLN 580 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~----~g~----~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a-~~~GID-ip~ 580 (774)
.+.++||.++|+.-+.++++.+.. .++ .+..+||+.+..++.+..+.+.+ .+|+|+|.- +-.-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 356899999999999999888875 356 89999999999988888887777 899999952 111111 446
Q ss_pred cceEE
Q 004098 581 VRRII 585 (774)
Q Consensus 581 V~~VI 585 (774)
+++||
T Consensus 176 l~~lV 180 (1054)
T 1gku_B 176 FDFIF 180 (1054)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 66666
No 355
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=56.21 E-value=7.1 Score=41.38 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCEEE--EecCCCchHHHH
Q 004098 180 EALSAWLAHHDCLV--LAATGSGKSLCF 205 (774)
Q Consensus 180 ~ai~~il~g~d~lv--~apTGsGKTl~~ 205 (774)
..+..+++|.|+.| .++||||||.+.
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEeecCCCCCcceec
Confidence 34556778998554 569999999875
No 356
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=55.97 E-value=7.1 Score=41.09 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=19.0
Q ss_pred HHHHHHcCCCEE--EEecCCCchHHHH
Q 004098 181 ALSAWLAHHDCL--VLAATGSGKSLCF 205 (774)
Q Consensus 181 ai~~il~g~d~l--v~apTGsGKTl~~ 205 (774)
.|..+++|.|+. +.++||+|||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 455677898854 4669999999875
No 357
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=55.91 E-value=21 Score=39.27 Aligned_cols=90 Identities=7% Similarity=-0.054 Sum_probs=62.1
Q ss_pred CCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHH---HHHHHHcCCceEEEEChHHHHHHHHHHHHHHHhcCccE
Q 004098 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNK---VEQKALRGMYSIIYVCPETVIRLIKPLQRLAESRGIAL 289 (774)
Q Consensus 213 ~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~---~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~ 289 (774)
++..+||...+.-+....+.|.+.+.++..++++.+... ....+..+..+|+|+|+..+.. -++...+++
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-------GiDip~v~~ 419 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-------GISVKNLHH 419 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-------SCCCCSEEE
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-------ccccccCcE
Confidence 455555555577777788888888888999998887643 3345567889999999886632 235677899
Q ss_pred EEEecccccccCCCCcHHHHHHHHHH
Q 004098 290 FAIDEVHCVSKWGHDFRPDYRRLSVL 315 (774)
Q Consensus 290 iVIDEaH~l~~~g~~fr~~~~~l~~l 315 (774)
||+..+. |+ ....+..+++.
T Consensus 420 vi~~~~~----~s--~~~~~Q~~GR~ 439 (510)
T 2oca_A 420 VVLAHGV----KS--KIIVLQTIGRV 439 (510)
T ss_dssp EEESSCC----CS--CCHHHHHHHHH
T ss_pred EEEeCCC----CC--HHHHHHHHhcc
Confidence 9987665 33 34445555554
No 358
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=55.65 E-value=22 Score=38.52 Aligned_cols=42 Identities=24% Similarity=0.188 Sum_probs=25.2
Q ss_pred CEEEEecCCCchHHHHHHhh--h-cc-CCeEEEEc--cchHHHHHHHH
Q 004098 190 DCLVLAATGSGKSLCFQIPA--L-LT-GKVVVVIS--PLISLMHDQCS 231 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa--l-~~-~~~~LVvs--Pt~~L~~qq~~ 231 (774)
-+++++++|+|||.+..-.+ + .. +.+++++. |.+..+.+|..
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~ 149 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLE 149 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHH
Confidence 56677899999997543222 2 23 66666654 44555555544
No 359
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=55.57 E-value=7.7 Score=41.39 Aligned_cols=38 Identities=26% Similarity=0.477 Sum_probs=27.4
Q ss_pred cCCCEEEEecCCCchHHHHHHhh---hccCCeEEEEccchH
Q 004098 187 AHHDCLVLAATGSGKSLCFQIPA---LLTGKVVVVISPLIS 224 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~lpa---l~~~~~~LVvsPt~~ 224 (774)
.+.+++|++|||+|||......+ ...+..++|+=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 47799999999999997533222 235677888877655
No 360
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=55.38 E-value=29 Score=37.21 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=53.7
Q ss_pred cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcC--------CCChH---HHHHHHHcCCceEEEEChHHHHHHHHHHHH
Q 004098 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGS--------GQPDN---KVEQKALRGMYSIIYVCPETVIRLIKPLQR 280 (774)
Q Consensus 212 ~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~--------~~~~~---~~~~~~~~~~~~Ilv~TPe~l~~ll~~~~~ 280 (774)
.+.++||.++++.-+....+.|.+.|+.+..++| +.+.. .....+..+..+|+|+|. .+ ..
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-~~-------~~ 431 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-VG-------EE 431 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-GG-------GG
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-cc-------cc
Confidence 5789999999999999999999999999999998 54442 234455678889999993 22 22
Q ss_pred HHHhcCccEEEEe
Q 004098 281 LAESRGIALFAID 293 (774)
Q Consensus 281 ~~~~~~i~~iVID 293 (774)
-+++..+++||+-
T Consensus 432 Gldl~~~~~Vi~~ 444 (494)
T 1wp9_A 432 GLDVPEVDLVVFY 444 (494)
T ss_dssp GGGSTTCCEEEES
T ss_pred CCCchhCCEEEEe
Confidence 2345567777753
No 361
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=55.35 E-value=1e+02 Score=32.76 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=22.8
Q ss_pred HHHHHHHHHH---cCCCEEEEecCCCchHHHHH
Q 004098 177 FQKEALSAWL---AHHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 177 ~Q~~ai~~il---~g~d~lv~apTGsGKTl~~~ 206 (774)
.=..+|...+ .|+-+.+.+|+|+|||....
T Consensus 160 tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 160 LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp HHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred ccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 3345666655 58999999999999997654
No 362
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=55.26 E-value=6.5 Score=34.29 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=31.6
Q ss_pred CCCcEEEEeCchHH--HHHHHHHHHhCCCceEEecCCCC
Q 004098 511 EDGLTIIYVPTRKE--TLSIAKYLCGFGVKAAAYNASLP 547 (774)
Q Consensus 511 ~~~~~IIF~~sr~~--~~~l~~~L~~~g~~~~~~h~~l~ 547 (774)
++.++||||.+-.. +...+..|...|+.+..+.||+.
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 46689999998766 78899999999999888889864
No 363
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=54.96 E-value=16 Score=41.50 Aligned_cols=55 Identities=16% Similarity=0.065 Sum_probs=46.8
Q ss_pred CCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEEEECh
Q 004098 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCP 268 (774)
Q Consensus 213 ~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TP 268 (774)
.+.+||.++++.-++..++.|.+.++++..+++. ........+..+..+|+|+|.
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd 409 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD 409 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT-THHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH-HHHHHHHhhcCCCcEEEEECc
Confidence 6789999999999999999999999999999874 334455566778899999995
No 364
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=54.65 E-value=7.7 Score=41.24 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCEEE--EecCCCchHHHH
Q 004098 180 EALSAWLAHHDCLV--LAATGSGKSLCF 205 (774)
Q Consensus 180 ~ai~~il~g~d~lv--~apTGsGKTl~~ 205 (774)
..|..+++|.|+.| .++||||||.+.
T Consensus 125 plv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 125 PLVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 35566788988544 569999999875
No 365
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=54.35 E-value=16 Score=40.46 Aligned_cols=71 Identities=8% Similarity=0.015 Sum_probs=48.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc-----cccC-c-ccCC
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----FGMG-I-DKLN 580 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a-----~~~G-I-Dip~ 580 (774)
..++||.|+++.-+..+.+.+... ++.+..+||+.+...+...+. ...+|+|+|.- +..+ + ++.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 568999999999999888887764 899999999987665433221 13689999942 2222 3 5677
Q ss_pred cceEEE
Q 004098 581 VRRIIH 586 (774)
Q Consensus 581 V~~VI~ 586 (774)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888773
No 366
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=54.27 E-value=8.5 Score=41.36 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=21.3
Q ss_pred HHHHHHHcCCCEEE--EecCCCchHHHH
Q 004098 180 EALSAWLAHHDCLV--LAATGSGKSLCF 205 (774)
Q Consensus 180 ~ai~~il~g~d~lv--~apTGsGKTl~~ 205 (774)
..|..+++|.|+.| .++||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 47888899998655 559999999875
No 367
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=54.01 E-value=7.2 Score=41.24 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=20.2
Q ss_pred HHHHHHcCCCEEE--EecCCCchHHHH
Q 004098 181 ALSAWLAHHDCLV--LAATGSGKSLCF 205 (774)
Q Consensus 181 ai~~il~g~d~lv--~apTGsGKTl~~ 205 (774)
.+..+++|.|+.| .++||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 6778889998554 569999999875
No 368
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=53.89 E-value=17 Score=39.35 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=17.7
Q ss_pred CCCEEEEecCCCchHHHHHHhh
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa 209 (774)
.+++++.+|+|+|||......+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA 71 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLA 71 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHH
Confidence 4689999999999998765443
No 369
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=53.81 E-value=7.9 Score=40.32 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=16.7
Q ss_pred cCCCEEEEecCCCchHHHH
Q 004098 187 AHHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~ 205 (774)
.|+.+++++|||+|||...
T Consensus 170 ~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTCCEEEEESTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5899999999999999753
No 370
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=53.72 E-value=10 Score=38.07 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCCCCHHHH-HHHHHHHcCC----C-EEEEecCCCchHHHHHHhh
Q 004098 160 KVNSLLKKHFGHSSLKNFQK-EALSAWLAHH----D-CLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 160 ~l~~~L~~~~g~~~~r~~Q~-~ai~~il~g~----d-~lv~apTGsGKTl~~~lpa 209 (774)
.+.+.|+ +-|+. |.+. .++..+++++ + +++.+|.|+|||+.+...+
T Consensus 74 ~i~~~l~-~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala 125 (267)
T 1u0j_A 74 RIYKILE-LNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIA 125 (267)
T ss_dssp HHHHHHH-HTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHH-HcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 5667776 55654 5553 3466677654 3 8889999999998765433
No 371
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=53.49 E-value=8.8 Score=41.67 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=19.1
Q ss_pred HHHHHHcCCCEEE--EecCCCchHHHH
Q 004098 181 ALSAWLAHHDCLV--LAATGSGKSLCF 205 (774)
Q Consensus 181 ai~~il~g~d~lv--~apTGsGKTl~~ 205 (774)
.+..+++|.|+.| .+.||+|||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 4556678998554 569999999875
No 372
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=52.85 E-value=10 Score=40.14 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=17.8
Q ss_pred CCCEEEEecCCCchHHHHHHhh
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa 209 (774)
..++++.+|+|+|||..+...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la 93 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLA 93 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
Confidence 4589999999999998765444
No 373
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=52.78 E-value=11 Score=31.71 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=31.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCc-eEEecCCCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVK-AAAYNASLP 547 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~-~~~~h~~l~ 547 (774)
+..++||||.+-..+...+..|...|+. +..+.||+.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 4568999999988899999999999995 888888864
No 374
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=52.45 E-value=7.5 Score=36.27 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=16.2
Q ss_pred cCCCEEEEecCCCchHHHHH
Q 004098 187 AHHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~ 206 (774)
.|+-+++++|+|+|||...-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46678899999999997643
No 375
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=52.33 E-value=7.3 Score=40.92 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=20.3
Q ss_pred HHHHHHcCCCEEE--EecCCCchHHHHH
Q 004098 181 ALSAWLAHHDCLV--LAATGSGKSLCFQ 206 (774)
Q Consensus 181 ai~~il~g~d~lv--~apTGsGKTl~~~ 206 (774)
.+..+++|.|+.| .++||||||.+..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 6677788998644 5699999998753
No 376
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=51.86 E-value=6.8 Score=40.00 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=15.6
Q ss_pred CCEEEEecCCCchHHHHHH
Q 004098 189 HDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~l 207 (774)
..+++.+|+|+|||..+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~ 66 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKT 66 (311)
T ss_dssp EEEEEESCSSSSHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHH
Confidence 3689999999999986543
No 377
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=51.84 E-value=1.4e+02 Score=32.95 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=22.2
Q ss_pred cCCCEEEEecCCCchHHHHHH---hhhcc-CCeEEEEc
Q 004098 187 AHHDCLVLAATGSGKSLCFQI---PALLT-GKVVVVIS 220 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~l---pal~~-~~~~LVvs 220 (774)
.|+-+++++|.|+|||..... .-+.. +...|++.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 467899999999999965433 22333 33455554
No 378
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=51.68 E-value=7.3 Score=40.85 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=19.8
Q ss_pred HHHHHHcCCCEE--EEecCCCchHHHHH
Q 004098 181 ALSAWLAHHDCL--VLAATGSGKSLCFQ 206 (774)
Q Consensus 181 ai~~il~g~d~l--v~apTGsGKTl~~~ 206 (774)
.+..+++|.|+. +.++||||||.+..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 566677899854 46699999998753
No 379
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=51.57 E-value=6.3 Score=39.55 Aligned_cols=20 Identities=40% Similarity=0.318 Sum_probs=16.2
Q ss_pred HcCCCEEEEecCCCchHHHH
Q 004098 186 LAHHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 186 l~g~d~lv~apTGsGKTl~~ 205 (774)
-.|.-+++++|||+|||...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 34677899999999999653
No 380
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=51.29 E-value=7.4 Score=41.40 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=18.1
Q ss_pred HHHHHcCCCEEE--EecCCCchHHHH
Q 004098 182 LSAWLAHHDCLV--LAATGSGKSLCF 205 (774)
Q Consensus 182 i~~il~g~d~lv--~apTGsGKTl~~ 205 (774)
+..+++|.|+.| .++||||||.+.
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 345678988554 569999999875
No 381
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=50.82 E-value=8.1 Score=36.65 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=18.4
Q ss_pred cCCCEEEEecCCCchHHHHHHhh
Q 004098 187 AHHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~lpa 209 (774)
.++.+++++|+|+|||......+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 47789999999999998765443
No 382
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=50.73 E-value=29 Score=35.31 Aligned_cols=70 Identities=21% Similarity=0.199 Sum_probs=51.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEeccc-----c-cCcccCCc
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIAF-----G-MGIDKLNV 581 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a~-----~-~GIDip~V 581 (774)
..++||.++++.-+.++++.+.+ .+..+..+||+.+...+... +. ..+|+|+|.-. . ..++..++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 56899999999999999998875 35789999999887654433 22 37899999421 2 23456677
Q ss_pred ceEEE
Q 004098 582 RRIIH 586 (774)
Q Consensus 582 ~~VI~ 586 (774)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77773
No 383
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=50.43 E-value=8.2 Score=35.90 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=17.4
Q ss_pred CCCEEEEecCCCchHHHHHHhh
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa 209 (774)
++.+++++++|+|||......+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999998765433
No 384
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=49.97 E-value=96 Score=29.67 Aligned_cols=126 Identities=13% Similarity=0.177 Sum_probs=78.9
Q ss_pred hcCCCCCCHHHHHHHHHHHc--CCC---EEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcCCc---
Q 004098 168 HFGHSSLKNFQKEALSAWLA--HHD---CLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVT--- 239 (774)
Q Consensus 168 ~~g~~~~r~~Q~~ai~~il~--g~d---~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~--- 239 (774)
..|+..+.|.+.+.+..+.. +.. .++-.-||+|-+..++...+-.++.++-|=.....+....+.+.+.|+.
T Consensus 31 ~~~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~ 110 (221)
T 3dr5_A 31 EFGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSR 110 (221)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGG
T ss_pred HcCCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCc
Confidence 45888889999998888764 222 6778899999888777666555677777777666666666667777764
Q ss_pred EEEEcCCCChHHHHHHHHcCCceEEEEChHH--HHHHHHHHHHHHHhcCccEEEEecccc
Q 004098 240 ACFLGSGQPDNKVEQKALRGMYSIIYVCPET--VIRLIKPLQRLAESRGIALFAIDEVHC 297 (774)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~~~~Ilv~TPe~--l~~ll~~~~~~~~~~~i~~iVIDEaH~ 297 (774)
+.++.++.. .....+..+.+|++++.... ...++......+ +.=.+||+|.+..
T Consensus 111 i~~~~gda~--~~l~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~L--kpGG~lv~dn~~~ 166 (221)
T 3dr5_A 111 VRFLLSRPL--DVMSRLANDSYQLVFGQVSPMDLKALVDAAWPLL--RRGGALVLADALL 166 (221)
T ss_dssp EEEECSCHH--HHGGGSCTTCEEEEEECCCTTTHHHHHHHHHHHE--EEEEEEEETTTTG
T ss_pred EEEEEcCHH--HHHHHhcCCCcCeEEEcCcHHHHHHHHHHHHHHc--CCCcEEEEeCCCC
Confidence 555544321 11111114679999986432 223333322222 3337899988764
No 385
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=49.78 E-value=25 Score=41.17 Aligned_cols=55 Identities=9% Similarity=-0.004 Sum_probs=44.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a 571 (774)
.+..++|.++|+.-|..+++.+.. .|+++..+.||++.+.|.... ..+|+|+|..
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpg 172 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNN 172 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCc
Confidence 455899999999999888877654 589999999999987655433 3799999963
No 386
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=49.70 E-value=13 Score=35.17 Aligned_cols=56 Identities=11% Similarity=0.010 Sum_probs=35.2
Q ss_pred CCCcEEEEeCchHHHHH-HHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 004098 511 EDGLTIIYVPTRKETLS-IAKYLCG---FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~-l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~ 570 (774)
...++||.|+++..+++ +.+.+.. .++.+..++|+.....+...+. ...+|+|+|.
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 35689999999998887 5555543 4778889998765433221111 1467888884
No 387
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=49.41 E-value=8.6 Score=40.77 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=19.6
Q ss_pred HHHHHHcCCCEEE--EecCCCchHHHHH
Q 004098 181 ALSAWLAHHDCLV--LAATGSGKSLCFQ 206 (774)
Q Consensus 181 ai~~il~g~d~lv--~apTGsGKTl~~~ 206 (774)
.+..+++|.|+.| .++||+|||.+..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 4566678988555 5699999998753
No 388
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=49.30 E-value=11 Score=35.57 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=14.0
Q ss_pred CCEEEEecCCCchHHHH
Q 004098 189 HDCLVLAATGSGKSLCF 205 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~ 205 (774)
|-+++++|+|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999653
No 389
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=49.28 E-value=9.3 Score=37.99 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=13.2
Q ss_pred EEEEecCCCchHHHHH
Q 004098 191 CLVLAATGSGKSLCFQ 206 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~ 206 (774)
+++++|||||||..+.
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 5789999999997654
No 390
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=49.04 E-value=14 Score=34.63 Aligned_cols=52 Identities=13% Similarity=0.009 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCC--CEEEEecCCCchHHHHH---Hhhh-ccCCeEEEEccchHHHH
Q 004098 176 NFQKEALSAWLAHH--DCLVLAATGSGKSLCFQ---IPAL-LTGKVVVVISPLISLMH 227 (774)
Q Consensus 176 ~~Q~~ai~~il~g~--d~lv~apTGsGKTl~~~---lpal-~~~~~~LVvsPt~~L~~ 227 (774)
+-|..++..++..+ =.+|.++-|++|+...+ +.+- ..+..+.||+|+..-..
T Consensus 37 ~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~ 94 (189)
T 2l8b_A 37 AGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQM 94 (189)
T ss_dssp HHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHH
T ss_pred ccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHH
Confidence 56899999988644 46667899999997632 2222 35789999999865433
No 391
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=48.24 E-value=11 Score=35.52 Aligned_cols=33 Identities=24% Similarity=0.056 Sum_probs=23.1
Q ss_pred EEEEecCCCchHHHHHHhhhccCCeEEEEccchH
Q 004098 191 CLVLAATGSGKSLCFQIPALLTGKVVVVISPLIS 224 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~ 224 (774)
++|.+++|||||.-+.-.+.. +..+++|+.-..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 689999999999655433333 566788877443
No 392
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=48.20 E-value=9.8 Score=41.59 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=44.9
Q ss_pred CCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEEEECh
Q 004098 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCP 268 (774)
Q Consensus 213 ~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TP 268 (774)
++.+||.+|++.-++...+.|.+.++.+..+++.... .....+..+..+|+|+|-
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~R~-~~~~~f~~g~~~iLVaT~ 244 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYD-TEYPKCKNGDWDFVITTD 244 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCCC-CCGGGSSSCCCSEEEESS
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHHHH-HHHhhccCCCceEEEECC
Confidence 6789999999999999999999999999999885322 233445567889999994
No 393
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=48.11 E-value=12 Score=33.48 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=32.2
Q ss_pred CCCcEEEEeCch--HHHHHHHHHHHhCCCceEEecCCCC
Q 004098 511 EDGLTIIYVPTR--KETLSIAKYLCGFGVKAAAYNASLP 547 (774)
Q Consensus 511 ~~~~~IIF~~sr--~~~~~l~~~L~~~g~~~~~~h~~l~ 547 (774)
+..++||||.+- ..+...+..|...|+++..+.||+.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 456899999987 5888999999999999999999864
No 394
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=47.98 E-value=1.1e+02 Score=33.85 Aligned_cols=51 Identities=18% Similarity=0.132 Sum_probs=30.0
Q ss_pred cCCCEEEEecCCCchHHHHH-Hhhh--ccCCeEEEEccchHHHHHHHHHHHhcCC
Q 004098 187 AHHDCLVLAATGSGKSLCFQ-IPAL--LTGKVVVVISPLISLMHDQCSKLSKHGV 238 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~-lpal--~~~~~~LVvsPt~~L~~qq~~~l~~~gi 238 (774)
.|.-+++.+|+|+|||.... +..+ ..+.+++++++-.. ..+....+..+|+
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~-~~~l~~~~~~~g~ 333 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES-RAQLLRNAYSWGM 333 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-HHHHHHHHHTTSC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCC
Confidence 46778899999999996433 2212 13556777766433 2344444444443
No 395
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=47.93 E-value=10 Score=31.90 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=32.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCc-eEEecCCCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVK-AAAYNASLP 547 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~-~~~~h~~l~ 547 (774)
+..+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 4568999999988899999999999995 888899864
No 396
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=47.78 E-value=15 Score=33.58 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=17.3
Q ss_pred CCCEEEEecCCCchHHHHHHhh
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa 209 (774)
++.+++.+|.|+|||...-+.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La 25 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLA 25 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 5678999999999997655444
No 397
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=47.50 E-value=20 Score=41.36 Aligned_cols=71 Identities=8% Similarity=0.124 Sum_probs=50.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec-----ccccC-c-ccCC
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI-----AFGMG-I-DKLN 580 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~-----a~~~G-I-Dip~ 580 (774)
.+++||.++++.-+....+.+.+. ++++..++|+.+...+...+. ...+|+|+|. .+..| + ++.+
T Consensus 61 ~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~ 136 (696)
T 2ykg_A 61 KGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSI 136 (696)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGG
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 368999999999998888887764 889999999986543322221 2479999995 22333 3 5677
Q ss_pred cceEEE
Q 004098 581 VRRIIH 586 (774)
Q Consensus 581 V~~VI~ 586 (774)
+++||.
T Consensus 137 ~~~vVi 142 (696)
T 2ykg_A 137 FTLMIF 142 (696)
T ss_dssp CSEEEE
T ss_pred ccEEEE
Confidence 888873
No 398
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=47.43 E-value=9.8 Score=36.43 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=15.8
Q ss_pred CCCEEEEecCCCchHHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~l 207 (774)
|+=+++++|+|+|||.....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~ 27 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREA 27 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHH
Confidence 56678899999999976543
No 399
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=47.41 E-value=12 Score=39.44 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=18.3
Q ss_pred HHHHH-cCCCE--EEEecCCCchHHHHH
Q 004098 182 LSAWL-AHHDC--LVLAATGSGKSLCFQ 206 (774)
Q Consensus 182 i~~il-~g~d~--lv~apTGsGKTl~~~ 206 (774)
|..++ .|.++ ++.++||||||.+..
T Consensus 76 v~~~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 76 IIDLYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HHHHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred hhhhccCCceeEEEeeCCCCCCCCEEEe
Confidence 33445 48884 778899999998753
No 400
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=47.36 E-value=10 Score=36.04 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=14.9
Q ss_pred cCCCEEEEecCCCchHHHH
Q 004098 187 AHHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~ 205 (774)
.|+-+.+++|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3677899999999999754
No 401
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=47.31 E-value=21 Score=40.92 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=44.9
Q ss_pred cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHcCCceEEEECh
Q 004098 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYVCP 268 (774)
Q Consensus 212 ~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~TP 268 (774)
.++.+||.+|++.-++...+.|.+.++.+..++++.+... ..+++.+|+|+|.
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e----r~~~~~~VLVATd 447 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV----IPTIGDVVVVATD 447 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG----SCSSSCEEEEECT
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH----HHhCCCcEEEECC
Confidence 3678999999999999999999999999999999887653 2345569999994
No 402
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=47.26 E-value=31 Score=40.41 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=44.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~ 570 (774)
.+..++|.++|+.-|...++.+.. .|+++..+.|+++.++|.... ..+|+|+|+
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 455799999999999988887654 589999999999987765543 268999996
No 403
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=47.02 E-value=11 Score=38.60 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=16.5
Q ss_pred CCCEEEEecCCCchHHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~l 207 (774)
...+++.+|+|+|||.....
T Consensus 38 ~~~vll~G~~GtGKT~la~~ 57 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHV 57 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 36899999999999976543
No 404
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=46.94 E-value=14 Score=33.85 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=17.1
Q ss_pred CCCEEEEecCCCchHHHHHHhh
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa 209 (774)
++-+++.+++|+|||.+....+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999998765444
No 405
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=46.15 E-value=7.5 Score=38.76 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=16.6
Q ss_pred CCCEEEEecCCCchHHHHHHh
Q 004098 188 HHDCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lp 208 (774)
.+.+++.+|+|+|||......
T Consensus 44 ~~~vll~G~~GtGKT~la~~l 64 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAV 64 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHH
Confidence 456899999999999875433
No 406
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=46.04 E-value=12 Score=39.10 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=13.8
Q ss_pred CEEEEecCCCchHHHHH
Q 004098 190 DCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~ 206 (774)
-++|++|||+|||....
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 46788999999997654
No 407
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=46.00 E-value=14 Score=32.30 Aligned_cols=37 Identities=8% Similarity=0.059 Sum_probs=32.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCc-eEEecCCCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVK-AAAYNASLP 547 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~-~~~~h~~l~ 547 (774)
+..++||||.+-..+...+..|...|+. +..|.||+.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999988899999999999985 888999974
No 408
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=45.84 E-value=15 Score=40.57 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=50.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc-----cccC-c-ccCC
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----FGMG-I-DKLN 580 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a-----~~~G-I-Dip~ 580 (774)
..++||.|+++.-+..+.+.+... ++.+..+||+.+...+...+. +..+|+|+|.- +..+ + +..+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 568999999999988888877764 899999999987655432221 23789999942 2222 3 5667
Q ss_pred cceEE
Q 004098 581 VRRII 585 (774)
Q Consensus 581 V~~VI 585 (774)
+++||
T Consensus 128 ~~~vV 132 (555)
T 3tbk_A 128 FTLMI 132 (555)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 78877
No 409
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=45.73 E-value=9 Score=36.71 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=14.6
Q ss_pred CCCEEEEecCCCchHHHH
Q 004098 188 HHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~ 205 (774)
++-+++.+|||+|||...
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 566889999999998543
No 410
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=45.67 E-value=20 Score=30.23 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=32.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLP 547 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~ 547 (774)
+..++||||.+-..+...+..|...|+....+.||+.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 4568999999998999999999999996677889864
No 411
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=45.66 E-value=23 Score=47.27 Aligned_cols=52 Identities=10% Similarity=0.072 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHH----HHHHcCCCEEEEecCCCchHHHHHHhh
Q 004098 156 DWEVKVNSLLKKHFGHSSLKNFQKEAL----SAWLAHHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 156 ~~~~~l~~~L~~~~g~~~~r~~Q~~ai----~~il~g~d~lv~apTGsGKTl~~~lpa 209 (774)
.+...+.+.+. ..|+ .+.+.+..=+ ..+..+.-+++++|||+|||.++.+.+
T Consensus 889 ~l~~~i~~~~~-~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La 944 (2695)
T 4akg_A 889 AIVQCLKDAGQ-RSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVI 944 (2695)
T ss_dssp HHHHHHHHHHH-HHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHH
Confidence 45555666666 3466 4666653322 233346789999999999999977554
No 412
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=45.56 E-value=12 Score=34.55 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=18.3
Q ss_pred cCCCEEEEecCCCchHHHHHHhh
Q 004098 187 AHHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~lpa 209 (774)
.++.+++.+++|+|||......+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 46789999999999998755433
No 413
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=45.16 E-value=23 Score=41.63 Aligned_cols=70 Identities=9% Similarity=0.015 Sum_probs=47.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc-----cccC-c-ccCC
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----FGMG-I-DKLN 580 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a-----~~~G-I-Dip~ 580 (774)
.+++||.|+++.-+..+.+.+.+. ++++..+||+.+...+...+. +..+|+|+|.- +..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 668999999999999988877764 899999999987665433221 25789999942 2222 3 5667
Q ss_pred cceEE
Q 004098 581 VRRII 585 (774)
Q Consensus 581 V~~VI 585 (774)
+++||
T Consensus 372 ~~~iV 376 (797)
T 4a2q_A 372 FTLMI 376 (797)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 78877
No 414
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=44.87 E-value=13 Score=36.85 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=19.9
Q ss_pred HcCCCEEEEecCCCchHHHHHHhh
Q 004098 186 LAHHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 186 l~g~d~lv~apTGsGKTl~~~lpa 209 (774)
+.|+.+++++++|+|||....+.+
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 448999999999999998765544
No 415
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=44.63 E-value=15 Score=34.19 Aligned_cols=22 Identities=27% Similarity=0.202 Sum_probs=17.1
Q ss_pred cCCCEEEEecCCCchHHHHHHh
Q 004098 187 AHHDCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~lp 208 (774)
.|+-+++++|.|+|||...-+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~L 29 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEAL 29 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4667889999999999765433
No 416
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=43.73 E-value=12 Score=39.89 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=13.0
Q ss_pred EEEEecCCCchHHHHH
Q 004098 191 CLVLAATGSGKSLCFQ 206 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~ 206 (774)
++|.+|||+|||....
T Consensus 5 i~i~GptgsGKttla~ 20 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEECcchhhHHHHHH
Confidence 5778999999996543
No 417
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=43.55 E-value=17 Score=32.55 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=31.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-ceEEecCCCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGV-KAAAYNASLP 547 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~-~~~~~h~~l~ 547 (774)
+..++||||.+-..+...+..|...|+ .+..|.||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 456899999997778899999999999 5899999984
No 418
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=43.03 E-value=2.2e+02 Score=27.04 Aligned_cols=121 Identities=13% Similarity=0.038 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHc--CCCEEEEecCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcCCc--EEEEcCCCC
Q 004098 173 SLKNFQKEALSAWLA--HHDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVT--ACFLGSGQP 248 (774)
Q Consensus 173 ~~r~~Q~~ai~~il~--g~d~lv~apTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~--~~~l~~~~~ 248 (774)
...+.+.+.+..++. ....++-.-||+|-+..++...+-.+..++.+=+....+....+.+.+.|+. +.++.+...
T Consensus 55 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~ 134 (232)
T 3cbg_A 55 QISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPAL 134 (232)
T ss_dssp SCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 457788877776553 4457778889999988777666544566666666655555555556666652 444444321
Q ss_pred hHHHHHHHHc----CCceEEEEChH--HHHHHHHHHHHHHHhcCccEEEEecccc
Q 004098 249 DNKVEQKALR----GMYSIIYVCPE--TVIRLIKPLQRLAESRGIALFAIDEVHC 297 (774)
Q Consensus 249 ~~~~~~~~~~----~~~~Ilv~TPe--~l~~ll~~~~~~~~~~~i~~iVIDEaH~ 297 (774)
.....+.. +.++++++... ....++...... ++.=.+||+|++..
T Consensus 135 --~~l~~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~--LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 135 --ATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNL--LRRGGLMVIDNVLW 185 (232)
T ss_dssp --HHHHHHHTSSSCCCEEEEEECSCGGGHHHHHHHHHHT--EEEEEEEEEECTTG
T ss_pred --HHHHHHHhcCCCCCcCEEEECCCHHHHHHHHHHHHHH--cCCCeEEEEeCCCc
Confidence 11122221 57899987632 223333322222 23347899998754
No 419
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=42.97 E-value=10 Score=40.27 Aligned_cols=19 Identities=42% Similarity=0.373 Sum_probs=15.8
Q ss_pred cCCCEEEEecCCCchHHHH
Q 004098 187 AHHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~ 205 (774)
.|..+++++|||+|||...
T Consensus 135 ~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999653
No 420
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=42.91 E-value=13 Score=34.74 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=18.0
Q ss_pred cCCCEEEEecCCCchHHHHHHhh
Q 004098 187 AHHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~lpa 209 (774)
.+..+++.+++|+|||.+....+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999998755443
No 421
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=42.87 E-value=2.8e+02 Score=27.95 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=20.7
Q ss_pred CCCEEEEecCCCchHHHHH-Hhhhc--cCCeEEEEc
Q 004098 188 HHDCLVLAATGSGKSLCFQ-IPALL--TGKVVVVIS 220 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~-lpal~--~~~~~LVvs 220 (774)
|.-+.+++|+|+|||...- +..+. .++.+++..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4557789999999997533 22222 355555553
No 422
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=42.70 E-value=12 Score=38.39 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=23.6
Q ss_pred cCCCEEEEecCCCchHHHHH-HhhhccCCeEEEEcc
Q 004098 187 AHHDCLVLAATGSGKSLCFQ-IPALLTGKVVVVISP 221 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~-lpal~~~~~~LVvsP 221 (774)
.|+-+.+++|+|+|||...- |.-+. .+.+++.+|
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~ 159 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFAN 159 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGG
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEec
Confidence 47788899999999996543 33344 667665544
No 423
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=42.66 E-value=17 Score=35.76 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=15.4
Q ss_pred CCEEEEecCCCchHHHHHH
Q 004098 189 HDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~l 207 (774)
+.+++.+|+|+|||.....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~ 68 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARA 68 (254)
T ss_dssp SEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3489999999999976543
No 424
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=42.40 E-value=47 Score=27.88 Aligned_cols=59 Identities=5% Similarity=-0.004 Sum_probs=40.4
Q ss_pred CCCCCCcEEEEeC------chHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEE
Q 004098 508 EPLEDGLTIIYVP------TRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVV 566 (774)
Q Consensus 508 ~~~~~~~~IIF~~------sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vL 566 (774)
+.....+++||.. ....|..+.++|.+.|+....++=...++.+..+.+......+..+
T Consensus 13 ~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~i 77 (109)
T 3ipz_A 13 KLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQL 77 (109)
T ss_dssp HHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEE
T ss_pred HHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 3345678999998 4899999999999999887776644455555555444333344444
No 425
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=42.23 E-value=14 Score=35.35 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=16.4
Q ss_pred cCCCEEEEecCCCchHHHHH
Q 004098 187 AHHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~ 206 (774)
.|+=+++++|+|+|||....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHH
Confidence 47778899999999997543
No 426
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=42.12 E-value=23 Score=28.13 Aligned_cols=36 Identities=11% Similarity=0.216 Sum_probs=29.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCc-eEEecCCCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVK-AAAYNASLP 547 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~-~~~~h~~l~ 547 (774)
+..+++|||.+-..+...+..|...|+. +..+ ||+.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4568999999988899999999999986 5455 7754
No 427
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=42.04 E-value=11 Score=34.26 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=14.6
Q ss_pred CEEEEecCCCchHHHHHHh
Q 004098 190 DCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lp 208 (774)
-+++.+|+|+|||......
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3678999999999765433
No 428
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=42.02 E-value=43 Score=39.44 Aligned_cols=54 Identities=9% Similarity=0.071 Sum_probs=44.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~ 570 (774)
.+..++|.++|+.-|...++.+.. .|+++..+.|+++.++|.... ..+|+++|+
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 456899999999999888877654 599999999999987766544 268999996
No 429
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=41.85 E-value=34 Score=39.48 Aligned_cols=56 Identities=20% Similarity=0.122 Sum_probs=41.7
Q ss_pred CCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHH-HcCCceEEEECh
Q 004098 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKA-LRGMYSIIYVCP 268 (774)
Q Consensus 213 ~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~-~~~~~~Ilv~TP 268 (774)
+..+||.+.++.-++.....|.+.|+++..+++++...+..... ......|+|+|.
T Consensus 474 gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g~VtVATd 530 (822)
T 3jux_A 474 GQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGMVTIATN 530 (822)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTTCEEEEET
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCCeEEEEcc
Confidence 56899999999999999999999999999999874332211111 112347999994
No 430
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=41.73 E-value=19 Score=36.14 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=15.8
Q ss_pred CCEEEEecCCCchHHHHHHh
Q 004098 189 HDCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lp 208 (774)
+.+++.+|.|+|||+..-..
T Consensus 45 ~GvlL~Gp~GtGKTtLakal 64 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAV 64 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 34999999999999865433
No 431
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=41.57 E-value=15 Score=32.47 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=32.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCc-eEEecCCCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVK-AAAYNASLP 547 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~-~~~~h~~l~ 547 (774)
...++||||.+-..+...+..|...|+. +..+.||+.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4568999999988888999999999995 889999864
No 432
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=41.49 E-value=1.1e+02 Score=33.30 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=19.5
Q ss_pred HHHHH---HcCCCEEEEecCCCchHHHH
Q 004098 181 ALSAW---LAHHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 181 ai~~i---l~g~d~lv~apTGsGKTl~~ 205 (774)
+|..+ .+|+-+++.+|.|.|||...
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHH
Confidence 44444 46889999999999999654
No 433
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=41.43 E-value=15 Score=34.84 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=16.5
Q ss_pred cCCCEEEEecCCCchHHHHH
Q 004098 187 AHHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~ 206 (774)
.|+-+++++|+|+|||....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 46788999999999997543
No 434
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=41.42 E-value=12 Score=35.27 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=16.7
Q ss_pred cCCCEEEEecCCCchHHHHHH
Q 004098 187 AHHDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~l 207 (774)
.|+-+++++|+|+|||...-+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKR 25 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467788999999999976443
No 435
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=41.33 E-value=17 Score=32.10 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=32.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCc-eEEecCCCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVK-AAAYNASLP 547 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~-~~~~h~~l~ 547 (774)
+..++||||.+-..+...+..|...|+. +..|.||+.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999988899999999999995 888899864
No 436
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=41.30 E-value=42 Score=38.53 Aligned_cols=74 Identities=8% Similarity=-0.004 Sum_probs=53.9
Q ss_pred EEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChH---HHHHHHHc--CCceEEEEChHHHHHHHHHHHHHHHhcCccEE
Q 004098 216 VVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDN---KVEQKALR--GMYSIIYVCPETVIRLIKPLQRLAESRGIALF 290 (774)
Q Consensus 216 ~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~---~~~~~~~~--~~~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~i 290 (774)
.+|+++++.-+....+.|.+.++.+..++++.+.. .....+.. +..+|+|+|-- +. .-++. ++++|
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi-----~e---~GlDi-~v~~V 393 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDA-----IG---MGLNL-SIRRI 393 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGG-----GG---SSCCC-CBSEE
T ss_pred CEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcH-----HH---CCcCc-CccEE
Confidence 35668888889999999999999999999999875 34445555 77899999953 11 22344 67888
Q ss_pred EEeccccc
Q 004098 291 AIDEVHCV 298 (774)
Q Consensus 291 VIDEaH~l 298 (774)
|+-.....
T Consensus 394 I~~~~~k~ 401 (677)
T 3rc3_A 394 IFYSLIKP 401 (677)
T ss_dssp EESCSBC-
T ss_pred EECCcccc
Confidence 77666543
No 437
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=41.11 E-value=14 Score=34.82 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=15.9
Q ss_pred cCCCEEEEecCCCchHHHHH
Q 004098 187 AHHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~ 206 (774)
.|+-+.+++|+|+|||...-
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 46667889999999997643
No 438
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=41.04 E-value=13 Score=39.22 Aligned_cols=17 Identities=47% Similarity=0.464 Sum_probs=14.4
Q ss_pred CCCEEEEecCCCchHHH
Q 004098 188 HHDCLVLAATGSGKSLC 204 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~ 204 (774)
+.-+++++|||||||..
T Consensus 123 ~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45688999999999965
No 439
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=40.94 E-value=13 Score=40.66 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=16.7
Q ss_pred CCCEEEEecCCCchHHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~l 207 (774)
++.+|+.+|+|+|||..+..
T Consensus 63 ~~~iLl~GppGtGKT~la~a 82 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALA 82 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHH
Confidence 46899999999999987643
No 440
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=40.75 E-value=42 Score=28.39 Aligned_cols=59 Identities=3% Similarity=0.034 Sum_probs=40.3
Q ss_pred CCCCCcEEEEe------CchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEE
Q 004098 509 PLEDGLTIIYV------PTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVV 567 (774)
Q Consensus 509 ~~~~~~~IIF~------~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLV 567 (774)
.....+++||. ++...|..+.++|.+.|+....++=...++.+..+.+.-....++.++
T Consensus 12 ~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~if 76 (111)
T 3zyw_A 12 LTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLY 76 (111)
T ss_dssp HHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEE
Confidence 33567899999 578899999999999998877776544555555554433333444443
No 441
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=40.69 E-value=14 Score=32.71 Aligned_cols=37 Identities=11% Similarity=0.194 Sum_probs=32.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-ceEEecCCCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGV-KAAAYNASLP 547 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~-~~~~~h~~l~ 547 (774)
+..++||||.+-..+...+..|...|+ .+..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 466899999998888899999999999 5889999964
No 442
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=40.63 E-value=2.4e+02 Score=29.07 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=42.9
Q ss_pred CCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCC----hHHHHHHHHcCCceEEEEC--hHHHHHHHHHHHHHHHhcC
Q 004098 213 GKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQP----DNKVEQKALRGMYSIIYVC--PETVIRLIKPLQRLAESRG 286 (774)
Q Consensus 213 ~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~----~~~~~~~~~~~~~~Ilv~T--Pe~l~~ll~~~~~~~~~~~ 286 (774)
+..+|+..|+-.-... .+...|..+..+..... +.+.....+.....+++++ ++... .+..+..+....+
T Consensus 80 g~~Vi~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~g~~~-~~~~i~~l~~~~~ 155 (390)
T 3b8x_A 80 GDEIIVPAVSWSTTYY---PLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVNLLGNPN-NFDEINKIIGGRD 155 (390)
T ss_dssp TCEEEEESSSCHHHHH---HHHHTTCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEECGGGCCC-CHHHHHHHHTTSC
T ss_pred cCEEEECCCCcHHHHH---HHHHcCCEEEEEecCccccCcCHHHHHHHhCcCCeEEEEECCccChh-hHHHHHHHHHHcC
Confidence 4467777776554433 34456777766643321 2233334444556666664 33321 2233333443333
Q ss_pred ccEEEEecccccc
Q 004098 287 IALFAIDEVHCVS 299 (774)
Q Consensus 287 i~~iVIDEaH~l~ 299 (774)
-+||+||||...
T Consensus 156 -~~li~D~a~~~g 167 (390)
T 3b8x_A 156 -IILLEDNCESMG 167 (390)
T ss_dssp -CEEEEECTTCTT
T ss_pred -CEEEEECcCccc
Confidence 478999999863
No 443
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=40.00 E-value=13 Score=35.56 Aligned_cols=17 Identities=41% Similarity=0.708 Sum_probs=14.0
Q ss_pred CEEEEecCCCchHHHHH
Q 004098 190 DCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~ 206 (774)
-.++.++.|+|||+...
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 36899999999998643
No 444
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=39.90 E-value=27 Score=34.39 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=15.9
Q ss_pred CCEEEEecCCCchHHHHHHhh
Q 004098 189 HDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa 209 (774)
.-+++++++|+|||......+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457889999999997654433
No 445
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=39.47 E-value=17 Score=33.98 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=14.1
Q ss_pred CCEEEEecCCCchHHHHH
Q 004098 189 HDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~ 206 (774)
+=+.+++|+|+|||...-
T Consensus 2 ~ii~l~GpsGaGKsTl~~ 19 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEESSSSSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 446789999999997543
No 446
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=39.35 E-value=22 Score=31.69 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=31.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCc-eEEecCCCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVK-AAAYNASLP 547 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~-~~~~h~~l~ 547 (774)
+..++||||.+-..+...+..|...|+. +..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 4568999999988999999999999995 888888854
No 447
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=39.20 E-value=17 Score=35.04 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=16.3
Q ss_pred cCCCEEEEecCCCchHHHH
Q 004098 187 AHHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~ 205 (774)
.|+-+.+++|+|+|||...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5788899999999999654
No 448
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=38.72 E-value=41 Score=39.66 Aligned_cols=55 Identities=9% Similarity=0.042 Sum_probs=44.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCG----FGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA 571 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a 571 (774)
.+..++|.++|+.-|...++.+.. .|+++..+.|+++.++|.... ..+|+|+|..
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 455799999999998888877654 599999999999987776654 3789999964
No 449
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=38.59 E-value=21 Score=35.69 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=15.8
Q ss_pred CCEEEEecCCCchHHHHHHh
Q 004098 189 HDCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lp 208 (774)
+.+++.+|+|+|||......
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i 93 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAV 93 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHH
Confidence 34899999999999765433
No 450
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=38.56 E-value=23 Score=32.84 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=15.2
Q ss_pred CEEEEecCCCchHHHHHHhh
Q 004098 190 DCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa 209 (774)
-+++++|.|+|||...-+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 46789999999998654443
No 451
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=38.44 E-value=19 Score=37.14 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=17.0
Q ss_pred CCCEEEEecCCCchHHHHHHh
Q 004098 188 HHDCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lp 208 (774)
..++++.+|+|+|||......
T Consensus 45 ~~~vLl~G~~GtGKT~la~~l 65 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRAL 65 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHH
Confidence 457999999999999865433
No 452
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=38.40 E-value=16 Score=33.80 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=16.0
Q ss_pred CCCEEEEecCCCchHHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~l 207 (774)
+.-+++.++.|+|||.....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 56688999999999976543
No 453
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=38.02 E-value=16 Score=33.12 Aligned_cols=18 Identities=11% Similarity=-0.184 Sum_probs=14.4
Q ss_pred CEEEEecCCCchHHHHHH
Q 004098 190 DCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~l 207 (774)
-+++.++.|+|||.....
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468899999999976543
No 454
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=37.69 E-value=17 Score=34.31 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=16.9
Q ss_pred cCCCEEEEecCCCchHHHHHH
Q 004098 187 AHHDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~l 207 (774)
.|+-+++++|.|+|||...-+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~ 48 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHG 48 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 367789999999999976543
No 455
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=37.43 E-value=39 Score=45.82 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHH----HHcCCCEEEEecCCCchHHHHHHhh--hcc----CCeEEEEcc
Q 004098 156 DWEVKVNSLLKKHFGHSSLKNFQKEALSA----WLAHHDCLVLAATGSGKSLCFQIPA--LLT----GKVVVVISP 221 (774)
Q Consensus 156 ~~~~~l~~~L~~~~g~~~~r~~Q~~ai~~----il~g~d~lv~apTGsGKTl~~~lpa--l~~----~~~~LVvsP 221 (774)
.+...+.+.++ ..|+ .+.+.|..=+-. +..+.-+++++|||+|||.|+...+ +.. .....+|-|
T Consensus 872 ~l~~ai~~~~~-~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNP 945 (3245)
T 3vkg_A 872 QLRKKIQEIAK-QRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDP 945 (3245)
T ss_dssp HHHHHHHHHHH-HTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECT
T ss_pred HHHHHHHHHHH-HcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECC
Confidence 35556666666 3477 466655433222 2235568999999999999986543 221 224456667
No 456
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=37.41 E-value=20 Score=41.70 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=20.8
Q ss_pred HHHHHHHcCCCEEE--EecCCCchHHHH
Q 004098 180 EALSAWLAHHDCLV--LAATGSGKSLCF 205 (774)
Q Consensus 180 ~ai~~il~g~d~lv--~apTGsGKTl~~ 205 (774)
..|..+++|.|+.| -++||||||.+.
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 36788899998655 469999999874
No 457
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=36.47 E-value=18 Score=33.16 Aligned_cols=19 Identities=32% Similarity=0.251 Sum_probs=14.6
Q ss_pred CEEEEecCCCchHHHHHHh
Q 004098 190 DCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lp 208 (774)
-+++.+++|+|||......
T Consensus 4 ~I~i~G~~GsGKST~a~~L 22 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREF 22 (181)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHH
Confidence 3678999999999765443
No 458
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=36.19 E-value=16 Score=33.51 Aligned_cols=20 Identities=35% Similarity=0.517 Sum_probs=16.0
Q ss_pred CCCEEEEecCCCchHHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~l 207 (774)
|+-+++++|.|+|||...-.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 55688899999999976544
No 459
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=36.17 E-value=24 Score=36.26 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=22.7
Q ss_pred EEEEecCCCchHHHHHHh-hhccCCeEEEEccc
Q 004098 191 CLVLAATGSGKSLCFQIP-ALLTGKVVVVISPL 222 (774)
Q Consensus 191 ~lv~apTGsGKTl~~~lp-al~~~~~~LVvsPt 222 (774)
+++.++.|+|||...-.. -+..+.++.||.|.
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE 39 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec
Confidence 678999999999764332 23456677888874
No 460
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=35.81 E-value=52 Score=27.21 Aligned_cols=57 Identities=7% Similarity=0.057 Sum_probs=40.2
Q ss_pred CCCcEEEEe------CchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEE
Q 004098 511 EDGLTIIYV------PTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVV 567 (774)
Q Consensus 511 ~~~~~IIF~------~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLV 567 (774)
...+++||. ++...|..+..+|.+.++....+.-...+..+..+.+.+....++.|+
T Consensus 15 ~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 15 NKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp TSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred ccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 345799998 567889999999999888877777665666666665555444555443
No 461
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=35.45 E-value=33 Score=41.13 Aligned_cols=70 Identities=9% Similarity=0.015 Sum_probs=46.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCceEEEEecc-----cccC-c-ccCC
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCGF----GVKAAAYNASLPKSQLRRVHTEFHENKLEVVVATIA-----FGMG-I-DKLN 580 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~a-----~~~G-I-Dip~ 580 (774)
..++||.|+++.-+..+.+.+... ++++..+||+.+...+...+. ...+|+|+|.- +..+ + .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 568999999999998888877764 899999999987655332221 13689999942 2222 3 5667
Q ss_pred cceEE
Q 004098 581 VRRII 585 (774)
Q Consensus 581 V~~VI 585 (774)
+++||
T Consensus 372 ~~liV 376 (936)
T 4a2w_A 372 FTLMI 376 (936)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 78877
No 462
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=35.38 E-value=19 Score=37.38 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=16.9
Q ss_pred CCEEEEecCCCchHHHHHHhh
Q 004098 189 HDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa 209 (774)
..+++.+|+|+|||....+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia 72 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIA 72 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 679999999999998655433
No 463
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=34.85 E-value=23 Score=40.85 Aligned_cols=71 Identities=11% Similarity=0.092 Sum_probs=47.5
Q ss_pred CCeEEEEccchHHHHHHHHHHHhc------CCcEEEEcCC--------CChHH---HHHHHHcCCceEEEEChHHHHHHH
Q 004098 213 GKVVVVISPLISLMHDQCSKLSKH------GVTACFLGSG--------QPDNK---VEQKALRGMYSIIYVCPETVIRLI 275 (774)
Q Consensus 213 ~~~~LVvsPt~~L~~qq~~~l~~~------gi~~~~l~~~--------~~~~~---~~~~~~~~~~~Ilv~TPe~l~~ll 275 (774)
+.++||.++++..+....+.|... |+++..++++ .+... ....+..+..+|+|+|-- +
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~-----~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTV-----A 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECS-----C
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccc-----c
Confidence 689999999999999999999986 8999999888 55533 334455678899999832 1
Q ss_pred HHHHHHHHhcCccEEE
Q 004098 276 KPLQRLAESRGIALFA 291 (774)
Q Consensus 276 ~~~~~~~~~~~i~~iV 291 (774)
..-+++..+++||
T Consensus 475 ---~~GIDip~v~~VI 487 (699)
T 4gl2_A 475 ---EEGLDIKECNIVI 487 (699)
T ss_dssp ---CTTSCCCSCCCCE
T ss_pred ---ccCCccccCCEEE
Confidence 1223455667766
No 464
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=34.75 E-value=33 Score=45.88 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=19.4
Q ss_pred HHHHHH-cCCCEEEEecCCCchHHHH
Q 004098 181 ALSAWL-AHHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 181 ai~~il-~g~d~lv~apTGsGKTl~~ 205 (774)
.+..++ .++.+|+++|||+|||...
T Consensus 1259 ll~~~l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1259 IFYDLLNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHHHHHHTCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCCeEEEECCCCCCHHHHH
Confidence 334433 4889999999999999865
No 465
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=34.69 E-value=26 Score=39.19 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=18.4
Q ss_pred cCCCEEEEecCCCchHHHHHHhh
Q 004098 187 AHHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~lpa 209 (774)
.+..+++.+|+|+|||..+...+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia 129 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIA 129 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 36789999999999998765443
No 466
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=34.61 E-value=17 Score=32.68 Aligned_cols=14 Identities=43% Similarity=0.622 Sum_probs=12.3
Q ss_pred EEEEecCCCchHHH
Q 004098 191 CLVLAATGSGKSLC 204 (774)
Q Consensus 191 ~lv~apTGsGKTl~ 204 (774)
.++++|+|+|||..
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999975
No 467
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=34.53 E-value=52 Score=31.99 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=38.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCc-eEEecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 004098 512 DGLTIIYVPTRKETLSIAKYLCGFGVK-AAAYNASLPKSQLRRVHTEFHENKLEVVVATI 570 (774)
Q Consensus 512 ~~~~IIF~~sr~~~~~l~~~L~~~g~~-~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT~ 570 (774)
..+++|+|+++.-+.++.+.+.+.++. +..++|+.. ...+|+|+|.
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 568999999999999999999888888 889998764 2457888883
No 468
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=34.49 E-value=29 Score=39.36 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=20.0
Q ss_pred HHcCCCEEEEecCCCchHHHHHHhh
Q 004098 185 WLAHHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 185 il~g~d~lv~apTGsGKTl~~~lpa 209 (774)
+..|+.+++.+|+|+|||..+...+
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia 81 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMA 81 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHh
Confidence 4468899999999999998765443
No 469
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=34.44 E-value=1.2e+02 Score=29.78 Aligned_cols=82 Identities=13% Similarity=0.190 Sum_probs=53.2
Q ss_pred HcCCCEEEEe-cCCCchHHHHHHhhhccCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHH------c
Q 004098 186 LAHHDCLVLA-ATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQPDNKVEQKAL------R 258 (774)
Q Consensus 186 l~g~d~lv~a-pTGsGKTl~~~lpal~~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~~~~~~~~~~~------~ 258 (774)
|+||-+||.+ ..|-|+..+-.+ ...+..++++.-..+-+++..++++..|.++..+..+..+......+. -
T Consensus 5 L~gKvalVTGas~GIG~aiA~~l--a~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKF--ALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHH--HHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHH--HHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5688778765 345566555333 235667777766677788888899888888888877776644332222 2
Q ss_pred CCceEEEEChH
Q 004098 259 GMYSIIYVCPE 269 (774)
Q Consensus 259 ~~~~Ilv~TPe 269 (774)
+..||+|-..+
T Consensus 83 G~iDiLVNNAG 93 (254)
T 4fn4_A 83 SRIDVLCNNAG 93 (254)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCc
Confidence 56677776544
No 470
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=34.37 E-value=15 Score=33.79 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=15.8
Q ss_pred CCCEEEEecCCCchHHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~l 207 (774)
|.=+.+++|.|+|||..+-.
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 55578899999999976554
No 471
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=34.33 E-value=2.1e+02 Score=24.10 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=30.8
Q ss_pred hcCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHH
Q 004098 284 SRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDIL 349 (774)
Q Consensus 284 ~~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~ 349 (774)
....++||+|- +.+ ...+.-+..++...+ ..|++++|+...........
T Consensus 46 ~~~~dlvi~d~---~~~-----~~g~~~~~~l~~~~~---------~~pii~ls~~~~~~~~~~~~ 94 (142)
T 2qxy_A 46 REKIDLVFVDV---FEG-----EESLNLIRRIREEFP---------DTKVAVLSAYVDKDLIINSV 94 (142)
T ss_dssp TSCCSEEEEEC---TTT-----HHHHHHHHHHHHHCT---------TCEEEEEESCCCHHHHHHHH
T ss_pred ccCCCEEEEeC---CCC-----CcHHHHHHHHHHHCC---------CCCEEEEECCCCHHHHHHHH
Confidence 35689999995 321 233444455555443 78999999988765554443
No 472
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=34.33 E-value=21 Score=33.94 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=16.9
Q ss_pred HHHcCCCEEEEecCCCchHHHHH
Q 004098 184 AWLAHHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 184 ~il~g~d~lv~apTGsGKTl~~~ 206 (774)
.+-.|+=+.+++|.|+|||...-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHH
Confidence 45568888899999999997543
No 473
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=34.30 E-value=42 Score=34.56 Aligned_cols=15 Identities=20% Similarity=0.111 Sum_probs=12.2
Q ss_pred EEEEecCCCchHHHH
Q 004098 191 CLVLAATGSGKSLCF 205 (774)
Q Consensus 191 ~lv~apTGsGKTl~~ 205 (774)
+.+.+|+|+|||...
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566889999999654
No 474
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=34.20 E-value=22 Score=32.58 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=16.4
Q ss_pred CCEEEEecCCCchHHHHHHhh
Q 004098 189 HDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa 209 (774)
+.+++.++.|+|||......+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 368899999999998765443
No 475
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=34.07 E-value=23 Score=32.57 Aligned_cols=18 Identities=33% Similarity=0.255 Sum_probs=14.1
Q ss_pred CEEEEecCCCchHHHHHH
Q 004098 190 DCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~l 207 (774)
=.++++|+|+|||...-.
T Consensus 28 ~~~i~G~NGsGKStll~a 45 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDA 45 (182)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 457899999999976443
No 476
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=33.98 E-value=16 Score=33.90 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=17.0
Q ss_pred CCCEEEEecCCCchHHHHHHhh
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa 209 (774)
|..+++.++.|||||......+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5568899999999998655443
No 477
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=33.94 E-value=18 Score=34.12 Aligned_cols=32 Identities=22% Similarity=0.128 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHcCCCEEEEecCCCchHHHHH
Q 004098 174 LKNFQKEALSAWLAHHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 174 ~r~~Q~~ai~~il~g~d~lv~apTGsGKTl~~~ 206 (774)
.+..+...+. .-.|.-+.+.+|.|+|||....
T Consensus 12 ~~~~~~~~~~-~~~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 12 VEKVDRQRLL-DQKGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCHHHHHHHH-TSCCEEEEEECSTTSSHHHHHH
T ss_pred cCHHHHHHhc-CCCCeEEEEECCCCCCHHHHHH
Confidence 4444543331 1235678889999999997654
No 478
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=33.94 E-value=16 Score=41.35 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=16.6
Q ss_pred CEEEEecCCCchHHHHHHhh
Q 004098 190 DCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 190 d~lv~apTGsGKTl~~~lpa 209 (774)
++|+.+|+|+|||..+...+
T Consensus 329 ~vLL~GppGtGKT~LAr~la 348 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFIS 348 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSS
T ss_pred ceEEECCCchHHHHHHHHHH
Confidence 89999999999998655433
No 479
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=33.58 E-value=33 Score=37.43 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=16.4
Q ss_pred CCCEEEEecCCCchHHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~l 207 (774)
..++|+.+|+|+|||.....
T Consensus 201 ~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 45899999999999976543
No 480
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=33.45 E-value=22 Score=31.19 Aligned_cols=37 Identities=19% Similarity=0.077 Sum_probs=31.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCc-eEEecCCCC
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVK-AAAYNASLP 547 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~-~~~~h~~l~ 547 (774)
++.++||||.+=..+...+..|...|+. +..+.||+.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 4568999999987788889999999995 888889984
No 481
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=33.05 E-value=63 Score=30.05 Aligned_cols=31 Identities=10% Similarity=0.105 Sum_probs=20.3
Q ss_pred ceEEEEChHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 004098 261 YSIIYVCPETVIRLIKPLQRLAESRGIALFAIDEVH 296 (774)
Q Consensus 261 ~~Ilv~TPe~l~~ll~~~~~~~~~~~i~~iVIDEaH 296 (774)
.+++-+.++.+...+..+ ....++||||=.-
T Consensus 55 ~~~~~~~~~~l~~~l~~l-----~~~yD~viiD~~~ 85 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD-----LADYDFAIVDGAG 85 (206)
T ss_dssp SEEEECCSHHHHHTHHHH-----TTTSSEEEEECCS
T ss_pred CcEEecCcHHHHHHHHHh-----cCCCCEEEEECCC
Confidence 577777777666655532 1357999999543
No 482
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=32.78 E-value=34 Score=32.28 Aligned_cols=21 Identities=19% Similarity=-0.004 Sum_probs=16.0
Q ss_pred CCCEEEEecCCCchHHHHHHh
Q 004098 188 HHDCLVLAATGSGKSLCFQIP 208 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lp 208 (774)
+.-+.+.+++|+|||....+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L 41 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNL 41 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 455778999999999765443
No 483
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=32.66 E-value=22 Score=39.30 Aligned_cols=19 Identities=37% Similarity=0.405 Sum_probs=16.5
Q ss_pred cCCCEEEEecCCCchHHHH
Q 004098 187 AHHDCLVLAATGSGKSLCF 205 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~ 205 (774)
.+.+++|.++||||||.+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GSCSEEEECCTTSSHHHHH
T ss_pred cCceEEEECCCCCCHHHHH
Confidence 3679999999999999764
No 484
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=32.64 E-value=22 Score=32.30 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=17.3
Q ss_pred CCEEEEecCCCchHHHHHHhh
Q 004098 189 HDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~lpa 209 (774)
+++++.++.|||||.+..+.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 578999999999998765544
No 485
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=32.38 E-value=93 Score=32.39 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=47.9
Q ss_pred EecCCCchHHH-HHHhhhc-cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCC---C-ChHHHHHHHHcCCceEEEEC
Q 004098 194 LAATGSGKSLC-FQIPALL-TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSG---Q-PDNKVEQKALRGMYSIIYVC 267 (774)
Q Consensus 194 ~apTGsGKTl~-~~lpal~-~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~---~-~~~~~~~~~~~~~~~Ilv~T 267 (774)
+.-||+|-... ..+-++. .+..+|+..|+-.= ......+...|..+..+-.. . +....+..+......+++.+
T Consensus 67 v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 145 (411)
T 3nnk_A 67 MLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFG-HLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTV 145 (411)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHH-HHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEE
T ss_pred EEECCCcHHHHHHHHHHhcCCCCEEEEecCCchH-HHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEe
Confidence 33466665433 2233333 45567777775411 11344455667776665432 1 22333333332244554444
Q ss_pred h-HH----HHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 268 P-ET----VIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 268 P-e~----l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
+ .. +.. +..+..+....+ -++|+||+|...
T Consensus 146 ~~~nptG~~~~-l~~i~~l~~~~~-~~li~Dea~~~~ 180 (411)
T 3nnk_A 146 QGDTSTTMLQP-LAELGEICRRYD-ALFYTDATASLG 180 (411)
T ss_dssp SEETTTTEECC-CTTHHHHHHHHT-CEEEEECTTTBT
T ss_pred CCCCCcceecc-HHHHHHHHHHcC-CEEEEECCcccC
Confidence 3 21 111 111222222233 489999998764
No 486
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=32.35 E-value=32 Score=33.05 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=17.2
Q ss_pred CCCEEEEecCCCchHHHHHHhh
Q 004098 188 HHDCLVLAATGSGKSLCFQIPA 209 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~lpa 209 (774)
+.-+++.+++|+|||......+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999998765443
No 487
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=32.24 E-value=41 Score=41.08 Aligned_cols=64 Identities=13% Similarity=-0.008 Sum_probs=49.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceEEEEe-----cccccC-cccCCcceE
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEVVVAT-----IAFGMG-IDKLNVRRI 584 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVAT-----~a~~~G-IDip~V~~V 584 (774)
.+.++||-++++.-+.+.++.|.+....+..++|+++ .++..+|+|+| +.+..+ ..+.++++|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 4668999999999999999999987668889999886 34678999999 333333 335566666
Q ss_pred E
Q 004098 585 I 585 (774)
Q Consensus 585 I 585 (774)
|
T Consensus 295 V 295 (1108)
T 3l9o_A 295 I 295 (1108)
T ss_dssp E
T ss_pred E
Confidence 6
No 488
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=32.17 E-value=2.1e+02 Score=23.56 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=15.5
Q ss_pred CCCEEEEeccCCHHHHHHHH
Q 004098 330 DIPLMALTATATIQVREDIL 349 (774)
Q Consensus 330 ~~~il~lTAT~~~~~~~~i~ 349 (774)
..|++++|+...........
T Consensus 79 ~~~ii~~t~~~~~~~~~~~~ 98 (130)
T 3eod_A 79 QTPVLVISATENMADIAKAL 98 (130)
T ss_dssp CCCEEEEECCCCHHHHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHH
Confidence 78999999998776655444
No 489
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=32.08 E-value=1.1e+02 Score=35.04 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=45.2
Q ss_pred hhccCCeEEEEccchHHHHHHHHHHHhcC------------------------------------CcEEEEcCCCChHH-
Q 004098 209 ALLTGKVVVVISPLISLMHDQCSKLSKHG------------------------------------VTACFLGSGQPDNK- 251 (774)
Q Consensus 209 al~~~~~~LVvsPt~~L~~qq~~~l~~~g------------------------------------i~~~~l~~~~~~~~- 251 (774)
.+..++.+||.+|++.-+...+..|.+.. ..+..++++.+..+
T Consensus 248 ~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r 327 (715)
T 2va8_A 248 SLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALR 327 (715)
T ss_dssp HHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred HHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHH
Confidence 34567899999999999998888887642 23777888877643
Q ss_pred --HHHHHHcCCceEEEECh
Q 004098 252 --VEQKALRGMYSIIYVCP 268 (774)
Q Consensus 252 --~~~~~~~~~~~Ilv~TP 268 (774)
.+..+..+..+|+|+|.
T Consensus 328 ~~v~~~f~~g~~~vlvaT~ 346 (715)
T 2va8_A 328 DLIEEGFRQRKIKVIVATP 346 (715)
T ss_dssp HHHHHHHHTTCSCEEEECG
T ss_pred HHHHHHHHcCCCeEEEECh
Confidence 33445678899999994
No 490
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=32.06 E-value=4.3e+02 Score=27.00 Aligned_cols=135 Identities=17% Similarity=0.179 Sum_probs=65.7
Q ss_pred hHHHHHHHHHH-----hcCCCCCC--HHHHHHHHHHHc-------CCCEEEEecCCCchHHHHH-Hhhhc-cC-CeEEEE
Q 004098 157 WEVKVNSLLKK-----HFGHSSLK--NFQKEALSAWLA-------HHDCLVLAATGSGKSLCFQ-IPALL-TG-KVVVVI 219 (774)
Q Consensus 157 ~~~~l~~~L~~-----~~g~~~~r--~~Q~~ai~~il~-------g~d~lv~apTGsGKTl~~~-lpal~-~~-~~~LVv 219 (774)
+.+.+.+.+.+ .++|.... +--++++...+. ..+-++. |.+|-...+. +-++. .+ ..+|+.
T Consensus 53 v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~--~~g~~~al~~~~~~l~~~g~d~vl~~ 130 (398)
T 3ele_A 53 VNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYM--TMGAAASLSICFRALTSDAYDEFITI 130 (398)
T ss_dssp HHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESSHHHHHHHHHHHHCCSTTCEEEEE
T ss_pred HHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEE--ccCHHHHHHHHHHHHcCCCCCEEEEe
Confidence 44455555554 34554332 334455555542 2233333 3344443333 33333 45 578888
Q ss_pred ccchHHHHHHHHHHHhcCCcEEEEcCCC----ChHHHHHHHHcCCceEEEE-Ch----------HHHHHHHHHHHHHHHh
Q 004098 220 SPLISLMHDQCSKLSKHGVTACFLGSGQ----PDNKVEQKALRGMYSIIYV-CP----------ETVIRLIKPLQRLAES 284 (774)
Q Consensus 220 sPt~~L~~qq~~~l~~~gi~~~~l~~~~----~~~~~~~~~~~~~~~Ilv~-TP----------e~l~~ll~~~~~~~~~ 284 (774)
.|+-.-..+ .+...|..+..+.... .+.+.....+....+++++ +| +.+..+. .....
T Consensus 131 ~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~----~~~~~ 203 (398)
T 3ele_A 131 APYFPEYKV---FVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLS----DLLEK 203 (398)
T ss_dssp SSCCTHHHH---HHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHH----HHHHH
T ss_pred CCCchhhHH---HHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHH----HHHHh
Confidence 898654433 3445677777664331 1222233333445666555 44 2222222 22221
Q ss_pred ------cCccEEEEecccccccC
Q 004098 285 ------RGIALFAIDEVHCVSKW 301 (774)
Q Consensus 285 ------~~i~~iVIDEaH~l~~~ 301 (774)
.+ -+||+||+|....+
T Consensus 204 ~~~~~~~~-~~li~De~~~~~~~ 225 (398)
T 3ele_A 204 KSKEIGRP-IFIIADEPYREIVY 225 (398)
T ss_dssp HHHHHTSC-CEEEEECTTTTCBC
T ss_pred hhhccCCC-eEEEEecccccccc
Confidence 22 48899999987543
No 491
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=32.01 E-value=23 Score=33.40 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=15.4
Q ss_pred CCEEEEecCCCchHHHHHH
Q 004098 189 HDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~l 207 (774)
+-++++++.|+|||.....
T Consensus 19 ~~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp SCEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999976543
No 492
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=32.00 E-value=26 Score=32.48 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=15.7
Q ss_pred CCCEEEEecCCCchHHHHHH
Q 004098 188 HHDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 188 g~d~lv~apTGsGKTl~~~l 207 (774)
+.-+++.+++|||||.....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34578899999999986544
No 493
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=31.91 E-value=34 Score=33.86 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=14.9
Q ss_pred CCEEEEecCCCchHHHHHH
Q 004098 189 HDCLVLAATGSGKSLCFQI 207 (774)
Q Consensus 189 ~d~lv~apTGsGKTl~~~l 207 (774)
.-++++++.|+|||.....
T Consensus 5 ~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHH
Confidence 4578899999999976543
No 494
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=31.70 E-value=4.1e+02 Score=27.63 Aligned_cols=98 Identities=26% Similarity=0.343 Sum_probs=48.9
Q ss_pred CCCchHHHHHH-hhhc-cCCeEEEEccchHHHHHHHHH-HHhcCCcEEEEcCCCChHHHHHHHHcCCceEEEE-ChHH--
Q 004098 197 TGSGKSLCFQI-PALL-TGKVVVVISPLISLMHDQCSK-LSKHGVTACFLGSGQPDNKVEQKALRGMYSIIYV-CPET-- 270 (774)
Q Consensus 197 TGsGKTl~~~l-pal~-~~~~~LVvsPt~~L~~qq~~~-l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~Ilv~-TPe~-- 270 (774)
|++|-...+.+ .++. .+..+|+..|.-.-....... +...|+.+..+... . +.....+.....++++ +|..
T Consensus 77 ~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~-~~l~~~i~~~~~~v~~~~~~n~~ 153 (412)
T 2cb1_A 77 LASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE--P-EAVREALSAKTRAVFVETVANPA 153 (412)
T ss_dssp ESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS--H-HHHHHHCCTTEEEEEEESSCTTT
T ss_pred ECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC--H-HHHHHHhccCCeEEEEeCCCCCC
Confidence 45565544332 2333 455677777765433333322 44568877777543 2 2233344445565554 3321
Q ss_pred --HHHHHHHHHHHHHhcCccEEEEecccccc
Q 004098 271 --VIRLIKPLQRLAESRGIALFAIDEVHCVS 299 (774)
Q Consensus 271 --l~~ll~~~~~~~~~~~i~~iVIDEaH~l~ 299 (774)
+.. +..+..+....+ -++|+||+|...
T Consensus 154 G~~~~-l~~i~~l~~~~~-~~li~D~~~~~~ 182 (412)
T 2cb1_A 154 LLVPD-LEALATLAEEAG-VALVVDNTFGAA 182 (412)
T ss_dssp CCCCC-HHHHHHHHHHHT-CEEEEECGGGTT
T ss_pred ccccc-HHHHHHHHHHcC-CEEEEECCCccc
Confidence 111 222233333333 478999999765
No 495
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=31.36 E-value=2.4e+02 Score=24.21 Aligned_cols=49 Identities=10% Similarity=0.189 Sum_probs=29.2
Q ss_pred cCccEEEEecccccccCCCCcHHHHHHHHHHHHHhcccccccccCCCCEEEEeccCCHHHHHHHH
Q 004098 285 RGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFGANNLKSLKFDIPLMALTATATIQVREDIL 349 (774)
Q Consensus 285 ~~i~~iVIDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~~~l~~~~~il~lTAT~~~~~~~~i~ 349 (774)
..+++||+|-. +.+. ..+.-+..++...+ ..|++++|+...........
T Consensus 57 ~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~---------~~~ii~~s~~~~~~~~~~~~ 105 (153)
T 3hv2_A 57 REVDLVISAAH--LPQM-----DGPTLLARIHQQYP---------STTRILLTGDPDLKLIAKAI 105 (153)
T ss_dssp SCCSEEEEESC--CSSS-----CHHHHHHHHHHHCT---------TSEEEEECCCCCHHHHHHHH
T ss_pred CCCCEEEEeCC--CCcC-----cHHHHHHHHHhHCC---------CCeEEEEECCCCHHHHHHHH
Confidence 46899999842 2221 12333334444443 78999999988766554443
No 496
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=31.36 E-value=1.2e+02 Score=29.98 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=45.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHH-HHHHHHHh--cCCceEEEEec
Q 004098 511 EDGLTIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQL-RRVHTEFH--ENKLEVVVATI 570 (774)
Q Consensus 511 ~~~~~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R-~~~~~~F~--~g~~~vLVAT~ 570 (774)
.+.++++.-.+.+.++++++.|...|.++..+..+++..+. ++..+... -|.++|||..-
T Consensus 30 ~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 30 NDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 45578887788889999999999999999999999976653 22222221 38899999754
No 497
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=31.17 E-value=1.2e+02 Score=31.79 Aligned_cols=86 Identities=20% Similarity=0.376 Sum_probs=46.2
Q ss_pred cCCeEEEEccchHHHHHHHHHHHhcCCcEEEEcCCC---ChHHHHHHHHcCCceEEEECh-----HHHHHHHHHHHHHHH
Q 004098 212 TGKVVVVISPLISLMHDQCSKLSKHGVTACFLGSGQ---PDNKVEQKALRGMYSIIYVCP-----ETVIRLIKPLQRLAE 283 (774)
Q Consensus 212 ~~~~~LVvsPt~~L~~qq~~~l~~~gi~~~~l~~~~---~~~~~~~~~~~~~~~Ilv~TP-----e~l~~ll~~~~~~~~ 283 (774)
.+..+|+..|+-.-.......+...|..+..+.... .+.+.....+.....++++++ +.+.. +..+..+..
T Consensus 112 ~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~-l~~i~~l~~ 190 (423)
T 3lvm_A 112 KGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQD-IAAIGEMCR 190 (423)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCC-HHHHHHHHH
T ss_pred CCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCccccC-HHHHHHHHH
Confidence 356777777766555555555566687777664321 122333344445566666653 22211 222233333
Q ss_pred hcCccEEEEecccccc
Q 004098 284 SRGIALFAIDEVHCVS 299 (774)
Q Consensus 284 ~~~i~~iVIDEaH~l~ 299 (774)
..+ -+||+||||...
T Consensus 191 ~~~-~~li~Dea~~~~ 205 (423)
T 3lvm_A 191 ARG-IIYHVDATQSVG 205 (423)
T ss_dssp HHT-CEEEEECTTTTT
T ss_pred HcC-CEEEEEhhhhcC
Confidence 333 489999998763
No 498
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=31.03 E-value=20 Score=37.84 Aligned_cols=16 Identities=38% Similarity=0.470 Sum_probs=13.2
Q ss_pred CEEEEecCCCchHHHH
Q 004098 190 DCLVLAATGSGKSLCF 205 (774)
Q Consensus 190 d~lv~apTGsGKTl~~ 205 (774)
-.++++|||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999654
No 499
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=30.96 E-value=2e+02 Score=23.89 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=39.2
Q ss_pred EEEEeCchHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCceE
Q 004098 515 TIIYVPTRKETLSIAKYLCGFGVKAAAYNASLPKSQLRRVHTEFHENKLEV 565 (774)
Q Consensus 515 ~IIF~~sr~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~v 565 (774)
+||-+..+.-.....+.-+++|..+...+.......|....+.|+++.+.|
T Consensus 82 vivttddkewikdfieeakergvevfvvynnkdddrrkeaqqefrsdgvdv 132 (162)
T 2l82_A 82 VIVTTDDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDV 132 (162)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSSCEE
T ss_pred EEEecCcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcCcee
Confidence 455555566666666666778999998888889999999999999875543
No 500
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=30.96 E-value=19 Score=34.90 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=11.9
Q ss_pred cCCCEEEEecCCCchHHHHH
Q 004098 187 AHHDCLVLAATGSGKSLCFQ 206 (774)
Q Consensus 187 ~g~d~lv~apTGsGKTl~~~ 206 (774)
.|+-+.+++|+|+|||...-
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp CCCEEEEECSCC----CHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 36667889999999996543
Done!