Query 004100
Match_columns 773
No_of_seqs 448 out of 3256
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 17:33:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004100hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08372 PRT_C: Plant phosphor 100.0 4.8E-41 1E-45 304.7 14.9 156 618-773 1-156 (156)
2 COG5038 Ca2+-dependent lipid-b 100.0 4.4E-27 9.6E-32 265.5 34.7 400 33-497 431-843 (1227)
3 KOG1028 Ca2+-dependent phospho 100.0 9.9E-28 2.1E-32 260.3 24.3 226 22-289 153-393 (421)
4 KOG1028 Ca2+-dependent phospho 99.9 2.7E-25 5.8E-30 241.4 27.0 216 198-460 165-393 (421)
5 COG5038 Ca2+-dependent lipid-b 99.9 2.1E-24 4.6E-29 244.0 31.6 412 36-493 577-1160(1227)
6 KOG1326 Membrane-associated pr 99.9 1.7E-23 3.7E-28 232.0 11.5 283 197-493 610-1021(1105)
7 cd04019 C2C_MCTP_PRT_plant C2 99.9 4.9E-22 1.1E-26 185.8 17.0 149 202-351 2-150 (150)
8 cd08379 C2D_MCTP_PRT_plant C2 99.9 5.7E-22 1.2E-26 178.5 14.7 125 363-489 1-125 (126)
9 KOG2059 Ras GTPase-activating 99.9 6E-22 1.3E-26 212.6 17.0 246 201-495 6-277 (800)
10 KOG2059 Ras GTPase-activating 99.9 6.5E-22 1.4E-26 212.4 16.6 249 39-333 6-276 (800)
11 cd04016 C2_Tollip C2 domain pr 99.9 2.9E-21 6.3E-26 172.8 14.5 118 362-493 2-121 (121)
12 cd04016 C2_Tollip C2 domain pr 99.9 5.6E-21 1.2E-25 171.0 15.2 117 38-161 2-121 (121)
13 cd08378 C2B_MCTP_PRT_plant C2 99.9 7.4E-21 1.6E-25 171.9 14.3 121 39-163 1-121 (121)
14 cd08682 C2_Rab11-FIP_classI C2 99.8 2.9E-20 6.3E-25 170.0 12.9 118 364-492 1-126 (126)
15 cd08682 C2_Rab11-FIP_classI C2 99.8 8.2E-20 1.8E-24 167.1 13.9 117 40-159 1-125 (126)
16 KOG1030 Predicted Ca2+-depende 99.8 4.2E-20 9.1E-25 167.7 10.3 95 360-465 4-98 (168)
17 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.8E-19 3.8E-24 163.6 14.5 120 363-495 1-121 (121)
18 cd04019 C2C_MCTP_PRT_plant C2 99.8 2.5E-19 5.3E-24 167.6 15.0 124 39-163 1-133 (150)
19 cd04015 C2_plant_PLD C2 domain 99.8 3.7E-19 8.1E-24 168.3 14.9 123 362-493 7-157 (158)
20 cd04022 C2A_MCTP_PRT_plant C2 99.8 5.7E-19 1.2E-23 161.7 14.6 119 40-162 2-126 (127)
21 cd04042 C2A_MCTP_PRT C2 domain 99.8 7E-19 1.5E-23 159.7 14.8 118 39-162 1-120 (121)
22 PF04842 DUF639: Plant protein 99.8 3.9E-19 8.5E-24 193.8 15.3 180 563-765 481-664 (683)
23 cd08379 C2D_MCTP_PRT_plant C2 99.8 6E-19 1.3E-23 159.0 14.0 113 39-157 1-125 (126)
24 cd08375 C2_Intersectin C2 doma 99.8 9.3E-19 2E-23 161.3 15.1 124 34-161 11-135 (136)
25 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 9.7E-19 2.1E-23 158.0 14.5 119 364-493 2-121 (121)
26 cd08681 C2_fungal_Inn1p-like C 99.8 8.8E-19 1.9E-23 158.5 13.7 117 38-161 1-118 (118)
27 cd08381 C2B_PI3K_class_II C2 d 99.8 8E-19 1.7E-23 158.9 12.9 110 24-143 3-121 (122)
28 PF11696 DUF3292: Protein of u 99.8 7.7E-19 1.7E-23 191.3 15.0 214 557-771 83-391 (642)
29 KOG1030 Predicted Ca2+-depende 99.8 4.8E-19 1E-23 160.9 10.7 94 35-129 3-97 (168)
30 cd08375 C2_Intersectin C2 doma 99.8 2.1E-18 4.5E-23 159.0 15.0 119 358-493 11-135 (136)
31 cd08400 C2_Ras_p21A1 C2 domain 99.8 2.4E-18 5.2E-23 156.9 15.2 119 362-495 4-124 (126)
32 cd08681 C2_fungal_Inn1p-like C 99.8 1.7E-18 3.7E-23 156.6 12.8 116 362-493 1-118 (118)
33 cd04024 C2A_Synaptotagmin-like 99.8 3.6E-18 7.8E-23 157.0 14.2 121 38-160 1-127 (128)
34 cd08677 C2A_Synaptotagmin-13 C 99.8 1.9E-18 4.2E-23 151.7 11.6 108 26-143 4-118 (118)
35 cd08376 C2B_MCTP_PRT C2 domain 99.8 6.3E-18 1.4E-22 152.4 14.8 113 39-161 1-114 (116)
36 cd08376 C2B_MCTP_PRT C2 domain 99.8 5.8E-18 1.3E-22 152.6 14.5 113 363-493 1-114 (116)
37 cd08377 C2C_MCTP_PRT C2 domain 99.8 6.5E-18 1.4E-22 153.1 14.7 118 362-493 1-118 (119)
38 cd08394 C2A_Munc13 C2 domain f 99.8 4.5E-18 9.9E-23 150.7 13.1 102 37-146 1-102 (127)
39 cd08678 C2_C21orf25-like C2 do 99.8 6E-18 1.3E-22 154.6 14.4 120 364-496 1-122 (126)
40 cd08392 C2A_SLP-3 C2 domain fi 99.8 4.5E-18 9.8E-23 154.8 13.2 118 23-144 2-128 (128)
41 cd04022 C2A_MCTP_PRT_plant C2 99.8 5.4E-18 1.2E-22 155.2 13.7 121 363-494 1-126 (127)
42 cd08381 C2B_PI3K_class_II C2 d 99.8 6.9E-18 1.5E-22 152.7 13.6 100 362-473 13-121 (122)
43 cd08393 C2A_SLP-1_2 C2 domain 99.8 4.8E-18 1E-22 154.7 12.6 115 23-144 2-125 (125)
44 cd04024 C2A_Synaptotagmin-like 99.8 7E-18 1.5E-22 155.1 13.8 123 362-493 1-128 (128)
45 cd04028 C2B_RIM1alpha C2 domai 99.8 7.7E-18 1.7E-22 155.4 13.7 116 22-147 17-140 (146)
46 cd04050 C2B_Synaptotagmin-like 99.8 5.2E-18 1.1E-22 149.7 11.6 103 39-146 1-103 (105)
47 cd04028 C2B_RIM1alpha C2 domai 99.8 1.8E-17 3.8E-22 153.0 15.1 104 362-475 29-138 (146)
48 cd08377 C2C_MCTP_PRT C2 domain 99.8 2.7E-17 5.8E-22 149.1 15.6 116 38-161 1-118 (119)
49 cd08677 C2A_Synaptotagmin-13 C 99.7 1.1E-17 2.3E-22 147.0 12.3 102 358-473 10-118 (118)
50 cd08391 C2A_C2C_Synaptotagmin_ 99.7 1.2E-17 2.7E-22 151.8 13.1 117 362-493 1-121 (121)
51 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 2.1E-17 4.5E-22 152.9 14.8 122 39-161 1-132 (133)
52 cd08393 C2A_SLP-1_2 C2 domain 99.7 1.1E-17 2.5E-22 152.2 12.8 103 361-474 14-125 (125)
53 cd04029 C2A_SLP-4_5 C2 domain 99.7 1.2E-17 2.7E-22 151.8 12.9 114 24-144 3-125 (125)
54 cd04029 C2A_SLP-4_5 C2 domain 99.7 1.8E-17 3.9E-22 150.7 13.8 105 359-473 12-124 (125)
55 cd08400 C2_Ras_p21A1 C2 domain 99.7 4E-17 8.6E-22 148.9 15.9 118 37-163 3-124 (126)
56 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 3E-17 6.5E-22 149.5 14.9 116 39-159 1-122 (123)
57 cd08395 C2C_Munc13 C2 domain t 99.7 1.2E-17 2.6E-22 149.1 11.8 101 40-146 2-113 (120)
58 cd04017 C2D_Ferlin C2 domain f 99.7 4.2E-17 9E-22 150.9 15.5 122 38-163 1-133 (135)
59 cd04036 C2_cPLA2 C2 domain pre 99.7 2.5E-17 5.5E-22 149.0 13.6 113 40-161 2-117 (119)
60 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 3.6E-17 7.8E-22 147.8 14.5 115 40-160 2-120 (121)
61 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 2.6E-17 5.7E-22 152.3 13.9 119 363-493 1-132 (133)
62 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.9E-17 4.2E-22 150.8 12.8 118 363-491 1-122 (123)
63 cd04011 C2B_Ferlin C2 domain s 99.7 1.9E-17 4.1E-22 147.7 12.5 106 35-146 1-111 (111)
64 cd08391 C2A_C2C_Synaptotagmin_ 99.7 2.8E-17 6.1E-22 149.4 13.8 114 38-160 1-120 (121)
65 cd04046 C2_Calpain C2 domain p 99.7 6.3E-17 1.4E-21 147.7 15.9 118 37-162 2-122 (126)
66 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 3.5E-17 7.7E-22 148.2 13.9 117 364-492 2-120 (121)
67 cd04036 C2_cPLA2 C2 domain pre 99.7 3.2E-17 7E-22 148.3 13.6 112 364-493 2-117 (119)
68 cd08680 C2_Kibra C2 domain fou 99.7 2.1E-17 4.6E-22 148.9 12.2 112 26-143 4-124 (124)
69 cd04046 C2_Calpain C2 domain p 99.7 7.3E-17 1.6E-21 147.3 15.8 119 362-494 3-122 (126)
70 cd04015 C2_plant_PLD C2 domain 99.7 5.8E-17 1.3E-21 153.3 15.6 119 37-161 6-157 (158)
71 cd08678 C2_C21orf25-like C2 do 99.7 5.3E-17 1.1E-21 148.4 14.5 117 40-164 1-122 (126)
72 cd08385 C2A_Synaptotagmin-1-5- 99.7 3.9E-17 8.5E-22 149.0 13.5 115 23-144 3-123 (124)
73 cd08387 C2A_Synaptotagmin-8 C2 99.7 4E-17 8.7E-22 148.9 13.2 113 25-144 5-123 (124)
74 cd08388 C2A_Synaptotagmin-4-11 99.7 4.3E-17 9.3E-22 148.9 13.3 117 23-144 3-127 (128)
75 cd08387 C2A_Synaptotagmin-8 C2 99.7 5.4E-17 1.2E-21 148.1 13.6 105 359-474 13-123 (124)
76 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 8.4E-17 1.8E-21 145.8 14.6 116 40-160 2-120 (121)
77 cd04010 C2B_RasA3 C2 domain se 99.7 3.9E-17 8.5E-22 151.8 12.3 102 40-147 2-124 (148)
78 cd08392 C2A_SLP-3 C2 domain fi 99.7 8E-17 1.7E-21 146.6 13.5 104 359-473 12-127 (128)
79 cd08378 C2B_MCTP_PRT_plant C2 99.7 8.6E-17 1.9E-21 145.3 13.5 118 201-332 1-119 (121)
80 cd08395 C2C_Munc13 C2 domain t 99.7 6.3E-17 1.4E-21 144.5 12.2 100 363-474 1-111 (120)
81 cd04039 C2_PSD C2 domain prese 99.7 5.7E-17 1.2E-21 143.0 11.6 96 362-465 1-99 (108)
82 cd08394 C2A_Munc13 C2 domain f 99.7 7.7E-17 1.7E-21 142.9 12.0 98 362-475 2-101 (127)
83 cd08389 C2A_Synaptotagmin-14_1 99.7 8.2E-17 1.8E-21 146.2 12.6 115 22-144 2-123 (124)
84 cd08688 C2_KIAA0528-like C2 do 99.7 6.7E-17 1.4E-21 143.8 11.6 104 40-145 1-109 (110)
85 cd04044 C2A_Tricalbin-like C2 99.7 9E-17 2E-21 146.8 12.8 121 361-495 1-124 (124)
86 cd04030 C2C_KIAA1228 C2 domain 99.7 1.2E-16 2.5E-21 146.7 13.6 115 23-144 3-127 (127)
87 cd04039 C2_PSD C2 domain prese 99.7 8.4E-17 1.8E-21 141.9 12.0 94 38-131 1-100 (108)
88 cd04031 C2A_RIM1alpha C2 domai 99.7 9.5E-17 2.1E-21 146.8 12.9 113 24-144 4-125 (125)
89 cd08373 C2A_Ferlin C2 domain f 99.7 2.2E-16 4.7E-21 144.7 14.8 114 44-164 2-118 (127)
90 cd04013 C2_SynGAP_like C2 doma 99.7 2.4E-16 5.2E-21 144.9 14.9 124 361-496 10-141 (146)
91 cd08685 C2_RGS-like C2 domain 99.7 8.1E-17 1.7E-21 144.8 11.5 102 36-143 10-119 (119)
92 cd04011 C2B_Ferlin C2 domain s 99.7 1.2E-16 2.6E-21 142.5 12.4 107 197-309 1-111 (111)
93 cd04027 C2B_Munc13 C2 domain s 99.7 2.1E-16 4.5E-21 144.5 14.2 123 363-491 2-127 (127)
94 cd08382 C2_Smurf-like C2 domai 99.7 2.4E-16 5.2E-21 143.2 14.4 114 40-159 2-122 (123)
95 cd08688 C2_KIAA0528-like C2 do 99.7 6.9E-17 1.5E-21 143.7 10.5 102 364-475 1-109 (110)
96 cd08385 C2A_Synaptotagmin-1-5- 99.7 2.2E-16 4.8E-21 144.1 13.9 104 360-474 14-123 (124)
97 cd04051 C2_SRC2_like C2 domain 99.7 1E-16 2.2E-21 146.6 11.4 118 39-157 1-125 (125)
98 cd04027 C2B_Munc13 C2 domain s 99.7 3E-16 6.4E-21 143.5 14.4 113 39-159 2-127 (127)
99 cd04010 C2B_RasA3 C2 domain se 99.7 1.2E-16 2.5E-21 148.6 11.8 101 363-476 1-123 (148)
100 cd08685 C2_RGS-like C2 domain 99.7 1.4E-16 3E-21 143.3 11.6 101 362-473 12-119 (119)
101 cd04044 C2A_Tricalbin-like C2 99.7 2.6E-16 5.7E-21 143.7 13.4 120 37-163 1-124 (124)
102 cd08521 C2A_SLP C2 domain firs 99.7 2.6E-16 5.6E-21 143.5 13.2 112 25-143 3-123 (123)
103 cd04041 C2A_fungal C2 domain f 99.7 1.1E-16 2.4E-21 142.6 10.2 100 38-145 1-108 (111)
104 cd04050 C2B_Synaptotagmin-like 99.7 2.2E-16 4.8E-21 139.3 11.9 102 202-309 2-103 (105)
105 cd04014 C2_PKC_epsilon C2 doma 99.7 6.5E-16 1.4E-20 142.5 15.5 115 38-163 4-130 (132)
106 cd08386 C2A_Synaptotagmin-7 C2 99.7 3.2E-16 7E-21 143.2 13.3 115 23-144 3-124 (125)
107 cd04030 C2C_KIAA1228 C2 domain 99.7 3.2E-16 7E-21 143.7 13.3 106 359-473 13-126 (127)
108 cd04018 C2C_Ferlin C2 domain t 99.7 2E-16 4.4E-21 147.2 12.0 95 363-465 1-108 (151)
109 cd04014 C2_PKC_epsilon C2 doma 99.7 4.8E-16 1E-20 143.4 14.5 117 362-495 4-130 (132)
110 cd04031 C2A_RIM1alpha C2 domai 99.7 4E-16 8.7E-21 142.7 13.8 102 360-473 14-124 (125)
111 cd08373 C2A_Ferlin C2 domain f 99.7 4.5E-16 9.8E-21 142.5 14.1 115 368-497 2-119 (127)
112 cd08388 C2A_Synaptotagmin-4-11 99.7 5.8E-16 1.3E-20 141.4 14.7 104 360-474 14-127 (128)
113 cd08386 C2A_Synaptotagmin-7 C2 99.7 5.5E-16 1.2E-20 141.7 14.1 104 360-474 14-124 (125)
114 cd08382 C2_Smurf-like C2 domai 99.7 4.9E-16 1.1E-20 141.2 13.1 118 364-491 2-122 (123)
115 cd08521 C2A_SLP C2 domain firs 99.7 5.1E-16 1.1E-20 141.5 13.2 105 359-473 11-123 (123)
116 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 3.2E-16 7E-21 148.8 12.1 105 36-145 25-138 (162)
117 cd04043 C2_Munc13_fungal C2 do 99.7 1.2E-15 2.6E-20 139.7 15.2 118 39-164 2-123 (126)
118 cd08680 C2_Kibra C2 domain fou 99.7 2.9E-16 6.3E-21 141.6 10.8 105 358-473 10-124 (124)
119 cd08406 C2B_Synaptotagmin-12 C 99.7 1.5E-16 3.3E-21 146.0 9.1 117 23-148 2-126 (136)
120 cd08390 C2A_Synaptotagmin-15-1 99.7 6.6E-16 1.4E-20 140.8 13.2 113 25-144 3-122 (123)
121 cd04017 C2D_Ferlin C2 domain f 99.7 1.1E-15 2.4E-20 141.3 14.8 120 201-332 2-131 (135)
122 cd04018 C2C_Ferlin C2 domain t 99.7 6.7E-16 1.4E-20 143.7 12.5 108 40-147 2-127 (151)
123 cd04041 C2A_fungal C2 domain f 99.7 3.9E-16 8.4E-21 139.2 10.4 98 362-473 1-106 (111)
124 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 1.4E-15 3E-20 144.5 14.2 105 359-474 24-137 (162)
125 cd08389 C2A_Synaptotagmin-14_1 99.7 1.3E-15 2.9E-20 138.3 13.4 104 359-474 13-123 (124)
126 cd08676 C2A_Munc13-like C2 dom 99.7 7.6E-16 1.6E-20 143.5 11.9 102 33-143 23-153 (153)
127 cd08406 C2B_Synaptotagmin-12 C 99.6 1.6E-15 3.4E-20 139.3 13.2 104 359-475 12-123 (136)
128 cd04038 C2_ArfGAP C2 domain pr 99.6 1.5E-15 3.2E-20 140.9 12.9 91 361-463 1-91 (145)
129 cd04032 C2_Perforin C2 domain 99.6 1.3E-15 2.9E-20 137.5 12.2 95 358-464 24-120 (127)
130 cd04038 C2_ArfGAP C2 domain pr 99.6 1.1E-15 2.3E-20 141.8 11.9 91 37-129 1-92 (145)
131 cd04049 C2_putative_Elicitor-r 99.6 1.7E-15 3.7E-20 138.2 13.0 104 38-146 1-109 (124)
132 cd04032 C2_Perforin C2 domain 99.6 1.2E-15 2.5E-20 137.9 11.4 94 34-128 24-119 (127)
133 cd04009 C2B_Munc13-like C2 dom 99.6 1.6E-15 3.4E-20 140.0 12.4 106 22-129 2-119 (133)
134 cd08407 C2B_Synaptotagmin-13 C 99.6 1.4E-15 3.1E-20 139.4 12.0 89 200-289 15-112 (138)
135 cd08384 C2B_Rabphilin_Doc2 C2 99.6 5.5E-16 1.2E-20 143.3 9.4 114 26-148 3-124 (133)
136 cd04045 C2C_Tricalbin-like C2 99.6 2.5E-15 5.5E-20 135.5 13.4 104 38-148 1-106 (120)
137 cd08690 C2_Freud-1 C2 domain f 99.6 4.1E-15 9E-20 138.2 14.9 117 364-494 4-137 (155)
138 cd08407 C2B_Synaptotagmin-13 C 99.6 1.1E-15 2.3E-20 140.3 10.7 100 24-125 3-112 (138)
139 cd08390 C2A_Synaptotagmin-15-1 99.6 3.4E-15 7.4E-20 136.1 14.1 106 359-474 11-122 (123)
140 cd04051 C2_SRC2_like C2 domain 99.6 1.8E-15 3.8E-20 138.3 11.5 113 363-489 1-125 (125)
141 cd04021 C2_E3_ubiquitin_ligase 99.6 5.5E-15 1.2E-19 134.6 14.4 118 39-159 3-124 (125)
142 cd04049 C2_putative_Elicitor-r 99.6 2.4E-15 5.2E-20 137.2 12.1 103 362-475 1-108 (124)
143 PLN03008 Phospholipase D delta 99.6 1.9E-15 4.1E-20 170.0 13.6 107 383-498 74-181 (868)
144 cd08404 C2B_Synaptotagmin-4 C2 99.6 9.9E-16 2.2E-20 142.0 9.0 117 23-148 2-126 (136)
145 cd08691 C2_NEDL1-like C2 domai 99.6 7.7E-15 1.7E-19 134.5 14.7 116 39-159 2-136 (137)
146 cd08675 C2B_RasGAP C2 domain s 99.6 2.1E-15 4.5E-20 139.3 10.9 102 40-147 1-122 (137)
147 cd04045 C2C_Tricalbin-like C2 99.6 2.8E-15 6.2E-20 135.2 11.5 103 362-476 1-104 (120)
148 cd04043 C2_Munc13_fungal C2 do 99.6 9E-15 2E-19 133.9 14.7 118 201-334 2-122 (126)
149 KOG0696 Serine/threonine prote 99.6 3.1E-16 6.7E-21 159.8 5.0 104 38-147 180-290 (683)
150 cd08410 C2B_Synaptotagmin-17 C 99.6 1.3E-15 2.8E-20 140.7 8.8 116 25-148 3-126 (135)
151 cd04026 C2_PKC_alpha_gamma C2 99.6 5.3E-15 1.1E-19 136.3 12.6 114 24-147 3-123 (131)
152 cd08692 C2B_Tac2-N C2 domain s 99.6 6.2E-15 1.3E-19 132.9 12.5 93 197-290 11-110 (135)
153 cd08405 C2B_Synaptotagmin-7 C2 99.6 6.1E-15 1.3E-19 136.8 12.6 117 23-148 2-126 (136)
154 cd08690 C2_Freud-1 C2 domain f 99.6 1.5E-14 3.2E-19 134.5 15.0 118 40-163 4-138 (155)
155 cd08408 C2B_Synaptotagmin-14_1 99.6 1.7E-15 3.6E-20 139.9 8.6 116 25-148 4-128 (138)
156 cd04037 C2E_Ferlin C2 domain f 99.6 3.3E-15 7.2E-20 135.8 10.4 90 39-128 1-93 (124)
157 cd08402 C2B_Synaptotagmin-1 C2 99.6 1.9E-15 4.1E-20 140.1 8.9 115 25-148 4-126 (136)
158 cd04040 C2D_Tricalbin-like C2 99.6 7E-15 1.5E-19 132.3 12.2 112 40-157 1-114 (115)
159 cd04040 C2D_Tricalbin-like C2 99.6 8.1E-15 1.8E-19 131.9 12.6 111 364-488 1-113 (115)
160 cd08409 C2B_Synaptotagmin-15 C 99.6 6E-15 1.3E-19 136.5 11.4 116 24-147 3-126 (137)
161 cd08675 C2B_RasGAP C2 domain s 99.6 5.2E-15 1.1E-19 136.7 10.6 103 364-478 1-123 (137)
162 cd08383 C2A_RasGAP C2 domain ( 99.6 1.3E-14 2.8E-19 131.0 12.9 112 364-493 2-117 (117)
163 cd04009 C2B_Munc13-like C2 dom 99.6 1.1E-14 2.4E-19 134.2 12.7 92 361-463 15-118 (133)
164 cd04026 C2_PKC_alpha_gamma C2 99.6 1E-14 2.2E-19 134.4 12.3 102 362-475 13-121 (131)
165 cd08402 C2B_Synaptotagmin-1 C2 99.6 1.5E-14 3.2E-19 134.2 13.4 105 358-475 11-123 (136)
166 cd08404 C2B_Synaptotagmin-4 C2 99.6 4.3E-15 9.4E-20 137.7 9.8 102 361-475 14-123 (136)
167 cd08403 C2B_Synaptotagmin-3-5- 99.6 4.2E-15 9E-20 137.5 9.2 115 25-148 3-125 (134)
168 cd08692 C2B_Tac2-N C2 domain s 99.6 1.4E-14 3E-19 130.7 12.1 114 27-146 3-124 (135)
169 KOG0696 Serine/threonine prote 99.6 1.6E-15 3.4E-20 154.8 6.3 103 201-309 181-289 (683)
170 cd08410 C2B_Synaptotagmin-17 C 99.6 2.1E-14 4.6E-19 132.6 13.4 106 358-475 10-123 (135)
171 cd00276 C2B_Synaptotagmin C2 d 99.6 5.1E-15 1.1E-19 137.2 9.1 116 25-149 3-126 (134)
172 cd08383 C2A_RasGAP C2 domain ( 99.6 2.6E-14 5.6E-19 129.0 13.5 111 40-161 2-117 (117)
173 cd08676 C2A_Munc13-like C2 dom 99.6 1.6E-14 3.4E-19 134.7 12.2 102 195-306 23-153 (153)
174 KOG1013 Synaptic vesicle prote 99.6 1.1E-15 2.4E-20 151.7 4.3 225 25-289 82-328 (362)
175 cd04021 C2_E3_ubiquitin_ligase 99.6 3.6E-14 7.9E-19 129.2 13.8 117 362-491 2-124 (125)
176 cd04013 C2_SynGAP_like C2 doma 99.6 5.7E-14 1.2E-18 129.2 15.0 115 38-163 11-140 (146)
177 cd04052 C2B_Tricalbin-like C2 99.6 1.5E-14 3.3E-19 128.8 10.5 101 55-163 9-110 (111)
178 cd08384 C2B_Rabphilin_Doc2 C2 99.6 5.5E-15 1.2E-19 136.6 7.8 105 358-475 9-121 (133)
179 cd08408 C2B_Synaptotagmin-14_1 99.6 3.6E-14 7.8E-19 131.0 13.1 105 358-474 11-124 (138)
180 cd08405 C2B_Synaptotagmin-7 C2 99.6 3.2E-14 6.8E-19 132.0 12.9 103 200-309 15-124 (136)
181 cd00275 C2_PLC_like C2 domain 99.6 6E-14 1.3E-18 128.9 14.5 116 38-161 2-127 (128)
182 cd08409 C2B_Synaptotagmin-15 C 99.6 1E-14 2.2E-19 134.9 8.8 105 359-475 12-124 (137)
183 cd04035 C2A_Rabphilin_Doc2 C2 99.6 5.4E-14 1.2E-18 128.0 13.3 105 23-129 2-114 (123)
184 cd04052 C2B_Tricalbin-like C2 99.6 2.2E-14 4.8E-19 127.8 10.4 99 382-495 9-110 (111)
185 cd08403 C2B_Synaptotagmin-3-5- 99.5 6.6E-14 1.4E-18 129.4 13.5 104 359-475 11-122 (134)
186 cd08691 C2_NEDL1-like C2 domai 99.5 8.7E-14 1.9E-18 127.6 13.7 118 363-491 2-136 (137)
187 cd00276 C2B_Synaptotagmin C2 d 99.5 1.7E-14 3.7E-19 133.6 8.6 104 360-476 12-123 (134)
188 PLN03200 cellulose synthase-in 99.5 2.1E-14 4.5E-19 176.6 11.7 119 359-495 1977-2101(2102)
189 cd08686 C2_ABR C2 domain in th 99.5 1.8E-13 3.9E-18 119.9 12.9 98 364-472 1-106 (118)
190 cd04037 C2E_Ferlin C2 domain f 99.5 1.1E-13 2.5E-18 125.7 12.0 89 202-291 2-92 (124)
191 cd04035 C2A_Rabphilin_Doc2 C2 99.5 2.4E-13 5.2E-18 123.8 13.8 99 361-471 14-121 (123)
192 cd04048 C2A_Copine C2 domain f 99.5 9.8E-14 2.1E-18 125.7 11.0 97 367-474 5-113 (120)
193 PLN03008 Phospholipase D delta 99.5 1.2E-13 2.5E-18 155.8 13.4 104 57-166 75-181 (868)
194 cd04048 C2A_Copine C2 domain f 99.5 1.2E-13 2.6E-18 125.0 10.8 97 44-145 6-114 (120)
195 cd08686 C2_ABR C2 domain in th 99.5 1.2E-13 2.7E-18 120.9 10.3 78 40-124 1-91 (118)
196 cd00275 C2_PLC_like C2 domain 99.5 4.5E-13 9.8E-18 123.0 14.0 117 363-493 3-127 (128)
197 PLN03200 cellulose synthase-in 99.5 1.7E-13 3.7E-18 168.7 10.9 121 33-162 1975-2100(2102)
198 cd04047 C2B_Copine C2 domain s 99.4 1.2E-12 2.7E-17 116.5 10.6 86 43-129 5-101 (110)
199 PF06398 Pex24p: Integral pero 99.4 3E-12 6.6E-17 138.9 15.2 180 560-753 1-195 (359)
200 PF00168 C2: C2 domain; Inter 99.4 1.6E-12 3.5E-17 109.8 9.8 81 40-120 1-85 (85)
201 cd04047 C2B_Copine C2 domain s 99.4 1.3E-12 2.8E-17 116.4 9.6 88 366-465 4-102 (110)
202 KOG1013 Synaptic vesicle prote 99.4 3.3E-13 7.1E-18 134.3 5.6 220 200-460 93-328 (362)
203 KOG1011 Neurotransmitter relea 99.4 1E-12 2.3E-17 139.6 7.3 126 362-493 295-423 (1283)
204 PF00168 C2: C2 domain; Inter 99.3 1.3E-11 2.8E-16 104.1 9.7 82 202-284 1-85 (85)
205 KOG1011 Neurotransmitter relea 99.3 4.7E-12 1E-16 134.8 8.1 118 39-164 296-426 (1283)
206 PLN02270 phospholipase D alpha 99.3 2.5E-11 5.3E-16 137.4 13.9 128 362-498 8-152 (808)
207 KOG1326 Membrane-associated pr 99.3 4.6E-12 9.9E-17 142.1 6.0 89 361-460 612-703 (1105)
208 cd08374 C2F_Ferlin C2 domain s 99.2 1.3E-10 2.8E-15 105.0 10.5 94 363-465 1-125 (133)
209 cd00030 C2 C2 domain. The C2 d 99.2 2E-10 4.3E-15 99.8 11.0 100 40-143 1-102 (102)
210 cd00030 C2 C2 domain. The C2 d 99.2 1.6E-10 3.5E-15 100.3 10.2 99 364-473 1-102 (102)
211 smart00239 C2 Protein kinase C 99.2 2.8E-10 6E-15 99.1 10.9 90 40-129 2-95 (101)
212 smart00239 C2 Protein kinase C 99.1 3.4E-10 7.3E-15 98.5 10.5 91 364-465 2-96 (101)
213 PLN02223 phosphoinositide phos 99.1 4.7E-10 1E-14 122.3 13.7 116 38-161 409-536 (537)
214 PLN02270 phospholipase D alpha 99.1 1.1E-09 2.4E-14 124.2 13.8 121 38-164 8-150 (808)
215 cd08374 C2F_Ferlin C2 domain s 99.1 8.7E-10 1.9E-14 99.6 10.2 91 40-130 2-125 (133)
216 cd08689 C2_fungal_Pkc1p C2 dom 99.0 7.3E-10 1.6E-14 93.4 8.0 84 40-128 1-88 (109)
217 PLN02952 phosphoinositide phos 99.0 2.4E-09 5.1E-14 119.6 13.8 116 38-161 470-598 (599)
218 KOG1031 Predicted Ca2+-depende 99.0 1.2E-09 2.6E-14 115.4 10.7 120 362-494 3-136 (1169)
219 PLN02223 phosphoinositide phos 99.0 3.7E-09 7.9E-14 115.4 13.8 105 361-476 408-520 (537)
220 KOG1327 Copine [Signal transdu 99.0 8.3E-09 1.8E-13 111.5 14.4 242 233-526 42-320 (529)
221 PLN02230 phosphoinositide phos 98.9 4.6E-09 1E-13 117.0 12.3 116 38-161 469-597 (598)
222 PLN02952 phosphoinositide phos 98.9 9.5E-09 2.1E-13 114.8 14.8 120 361-494 469-597 (599)
223 PLN02222 phosphoinositide phos 98.9 1E-08 2.2E-13 114.2 13.4 115 38-160 452-579 (581)
224 PLN02228 Phosphoinositide phos 98.9 1.5E-08 3.3E-13 112.5 13.3 118 38-163 431-562 (567)
225 KOG0169 Phosphoinositide-speci 98.8 2.1E-08 4.6E-13 111.5 11.6 116 39-162 617-744 (746)
226 PLN02230 phosphoinositide phos 98.8 4E-08 8.8E-13 109.6 13.8 105 361-476 468-581 (598)
227 PLN02228 Phosphoinositide phos 98.8 5.8E-08 1.3E-12 107.9 14.2 122 361-495 430-562 (567)
228 PLN02222 phosphoinositide phos 98.8 6.9E-08 1.5E-12 107.6 14.4 105 361-476 451-564 (581)
229 cd08689 C2_fungal_Pkc1p C2 dom 98.8 2.7E-08 5.9E-13 84.0 7.9 86 364-462 1-87 (109)
230 KOG0169 Phosphoinositide-speci 98.7 6.7E-08 1.4E-12 107.6 12.6 118 363-493 617-743 (746)
231 KOG1328 Synaptic vesicle prote 98.7 4.3E-09 9.3E-14 114.3 2.8 126 33-164 109-303 (1103)
232 KOG1031 Predicted Ca2+-depende 98.7 2.6E-08 5.7E-13 105.5 7.8 124 37-161 2-135 (1169)
233 KOG1264 Phospholipase C [Lipid 98.6 8.7E-08 1.9E-12 105.5 9.3 116 38-162 1065-1189(1267)
234 KOG1328 Synaptic vesicle prote 98.6 1.4E-08 3E-13 110.5 3.0 104 23-128 934-1049(1103)
235 PLN02352 phospholipase D epsil 98.6 3.1E-07 6.8E-12 104.4 12.5 121 362-499 10-135 (758)
236 KOG0905 Phosphoinositide 3-kin 98.6 6.6E-08 1.4E-12 110.5 6.7 123 15-146 1504-1636(1639)
237 KOG1264 Phospholipase C [Lipid 98.6 2.5E-07 5.5E-12 102.0 10.9 99 362-475 1065-1171(1267)
238 KOG1327 Copine [Signal transdu 98.6 6.2E-07 1.4E-11 97.2 13.0 178 71-291 42-235 (529)
239 PLN02352 phospholipase D epsil 98.5 9.4E-07 2E-11 100.6 12.6 117 38-165 10-133 (758)
240 cd08683 C2_C2cd3 C2 domain fou 98.5 1.7E-07 3.7E-12 81.4 4.5 110 364-473 1-143 (143)
241 PF12416 DUF3668: Cep120 prote 98.4 0.00018 3.9E-09 75.7 26.8 244 40-292 2-295 (340)
242 PF08372 PRT_C: Plant phosphor 98.4 1.7E-07 3.6E-12 86.2 3.6 101 522-623 13-119 (156)
243 KOG0905 Phosphoinositide 3-kin 98.3 7.9E-07 1.7E-11 102.0 6.4 102 362-474 1524-1634(1639)
244 PF12416 DUF3668: Cep120 prote 98.1 0.0015 3.2E-08 69.0 25.3 238 202-462 2-294 (340)
245 cd08684 C2A_Tac2-N C2 domain f 97.8 2.5E-05 5.4E-10 63.1 4.1 88 41-129 2-95 (103)
246 PLN02964 phosphatidylserine de 97.7 5.1E-05 1.1E-09 86.2 6.7 89 359-465 51-141 (644)
247 cd08683 C2_C2cd3 C2 domain fou 97.7 6.8E-05 1.5E-09 65.6 5.1 100 40-143 1-143 (143)
248 PLN02964 phosphatidylserine de 97.6 6.7E-05 1.5E-09 85.3 6.3 90 33-129 49-140 (644)
249 KOG2060 Rab3 effector RIM1 and 97.4 0.0002 4.4E-09 73.7 5.5 108 359-476 266-380 (405)
250 cd08684 C2A_Tac2-N C2 domain f 97.3 0.00037 8E-09 56.5 4.2 87 203-292 2-94 (103)
251 KOG3837 Uncharacterized conser 97.1 0.0003 6.5E-09 73.0 3.2 117 39-162 368-503 (523)
252 KOG3837 Uncharacterized conser 97.1 0.00052 1.1E-08 71.3 4.3 120 360-493 365-502 (523)
253 KOG2060 Rab3 effector RIM1 and 97.0 0.00041 9E-09 71.5 3.1 112 31-147 262-381 (405)
254 PF15627 CEP76-C2: CEP76 C2 do 96.6 0.025 5.4E-07 52.4 10.7 126 362-495 9-151 (156)
255 cd08398 C2_PI3K_class_I_alpha 96.0 0.094 2E-06 49.3 11.5 107 31-164 4-124 (158)
256 PF15627 CEP76-C2: CEP76 C2 do 95.9 0.13 2.8E-06 47.7 11.9 127 35-164 6-152 (156)
257 KOG1265 Phospholipase C [Lipid 95.8 0.019 4E-07 65.5 6.8 98 37-149 702-809 (1189)
258 cd08693 C2_PI3K_class_I_beta_d 95.7 0.068 1.5E-06 51.3 9.4 91 31-126 4-120 (173)
259 cd08398 C2_PI3K_class_I_alpha 95.3 0.11 2.4E-06 48.9 9.3 88 362-460 8-105 (158)
260 cd08693 C2_PI3K_class_I_beta_d 95.0 0.16 3.6E-06 48.6 9.7 94 362-460 8-119 (173)
261 cd08397 C2_PI3K_class_III C2 d 94.5 0.36 7.7E-06 45.6 10.4 92 57-168 28-129 (159)
262 KOG1265 Phospholipase C [Lipid 94.5 0.1 2.3E-06 59.7 7.8 95 200-309 703-806 (1189)
263 PF10358 NT-C2: N-terminal C2 94.4 0.81 1.8E-05 42.4 12.6 116 362-496 7-137 (143)
264 PF02453 Reticulon: Reticulon; 94.2 0.014 3.1E-07 56.0 0.2 62 692-753 90-151 (169)
265 cd08380 C2_PI3K_like C2 domain 94.2 0.38 8.2E-06 45.4 9.9 106 39-165 9-126 (156)
266 PF10358 NT-C2: N-terminal C2 93.9 1.4 3.1E-05 40.7 13.3 117 38-163 7-136 (143)
267 cd08380 C2_PI3K_like C2 domain 93.3 0.6 1.3E-05 44.1 9.5 88 201-290 9-107 (156)
268 cd08397 C2_PI3K_class_III C2 d 93.2 0.45 9.7E-06 44.9 8.4 70 384-461 28-107 (159)
269 cd04012 C2A_PI3K_class_II C2 d 92.6 0.59 1.3E-05 44.8 8.5 90 201-290 9-119 (171)
270 cd04012 C2A_PI3K_class_II C2 d 91.6 1.1 2.4E-05 42.9 9.2 105 39-163 9-136 (171)
271 PF00792 PI3K_C2: Phosphoinosi 91.6 2.2 4.7E-05 39.5 10.8 74 73-166 23-105 (142)
272 cd08399 C2_PI3K_class_I_gamma 91.5 2.4 5.2E-05 40.7 11.1 123 30-163 5-139 (178)
273 cd08399 C2_PI3K_class_I_gamma 91.0 2.9 6.3E-05 40.1 11.1 95 362-460 10-121 (178)
274 cd08687 C2_PKN-like C2 domain 91.0 3.1 6.8E-05 34.6 9.5 64 59-127 9-73 (98)
275 KOG1452 Predicted Rho GTPase-a 90.6 0.54 1.2E-05 47.7 5.9 79 31-111 44-125 (442)
276 KOG1329 Phospholipase D1 [Lipi 88.4 0.57 1.2E-05 54.6 4.9 107 384-498 136-244 (887)
277 cd08694 C2_Dock-A C2 domains f 87.6 3.2 7E-05 40.2 8.7 40 71-110 54-95 (196)
278 PF08151 FerI: FerI (NUC094) d 87.2 0.7 1.5E-05 36.9 3.3 43 286-335 2-44 (72)
279 cd08687 C2_PKN-like C2 domain 87.1 8.4 0.00018 32.2 9.5 62 221-289 9-71 (98)
280 KOG1452 Predicted Rho GTPase-a 86.9 1.5 3.3E-05 44.7 6.1 76 360-437 49-125 (442)
281 PF00792 PI3K_C2: Phosphoinosi 86.4 3.9 8.5E-05 37.8 8.5 66 388-461 4-85 (142)
282 smart00142 PI3K_C2 Phosphoinos 86.1 4.1 8.9E-05 35.1 7.9 70 40-109 13-91 (100)
283 PF15625 CC2D2AN-C2: CC2D2A N- 84.2 24 0.00051 33.7 12.8 88 220-309 36-125 (168)
284 cd08695 C2_Dock-B C2 domains f 83.5 2.5 5.4E-05 40.8 5.8 40 71-110 54-95 (189)
285 PF14429 DOCK-C2: C2 domain in 83.3 3.7 8E-05 39.9 7.1 55 71-125 60-120 (184)
286 PF11618 DUF3250: Protein of u 83.1 7.7 0.00017 33.8 8.2 93 389-493 2-104 (107)
287 smart00142 PI3K_C2 Phosphoinos 81.9 9.2 0.0002 32.9 8.3 70 202-272 13-91 (100)
288 PF11618 DUF3250: Protein of u 81.7 3.9 8.5E-05 35.7 5.8 95 62-161 2-104 (107)
289 PF14429 DOCK-C2: C2 domain in 78.5 6.5 0.00014 38.2 7.0 58 398-460 60-120 (184)
290 PF11696 DUF3292: Protein of u 77.3 6.2 0.00014 45.0 7.1 65 692-759 105-170 (642)
291 PF15625 CC2D2AN-C2: CC2D2A N- 77.2 12 0.00025 35.8 8.1 69 386-463 37-108 (168)
292 KOG2419 Phosphatidylserine dec 73.1 0.27 5.8E-06 54.5 -4.6 174 220-462 304-481 (975)
293 PF06398 Pex24p: Integral pero 72.3 8.2 0.00018 41.9 6.5 48 683-730 10-60 (359)
294 PTZ00447 apical membrane antig 69.1 49 0.0011 34.6 10.5 110 361-491 57-170 (508)
295 cd05137 RasGAP_CLA2_BUD2 CLA2/ 68.2 10 0.00023 41.4 6.1 42 450-493 1-43 (395)
296 cd08679 C2_DOCK180_related C2 66.4 15 0.00033 35.3 6.3 38 72-110 55-94 (178)
297 cd08696 C2_Dock-C C2 domains f 64.9 28 0.0006 33.5 7.5 62 397-460 54-118 (179)
298 PF09726 Macoilin: Transmembra 64.4 14 0.0003 43.6 6.5 17 727-743 90-106 (697)
299 cd08694 C2_Dock-A C2 domains f 62.4 25 0.00053 34.2 6.7 59 397-459 53-114 (196)
300 PTZ00447 apical membrane antig 62.2 98 0.0021 32.5 11.1 119 197-336 55-176 (508)
301 PF08151 FerI: FerI (NUC094) d 59.5 19 0.00042 28.8 4.5 48 123-172 3-52 (72)
302 cd08696 C2_Dock-C C2 domains f 59.2 26 0.00056 33.7 6.2 40 71-110 55-96 (179)
303 cd08695 C2_Dock-B C2 domains f 58.6 24 0.00052 34.2 5.9 39 233-272 54-94 (189)
304 cd08697 C2_Dock-D C2 domains f 56.6 50 0.0011 32.0 7.7 64 397-460 56-123 (185)
305 KOG3543 Ca2+-dependent activat 56.2 69 0.0015 36.2 9.5 100 362-474 341-440 (1218)
306 cd08697 C2_Dock-D C2 domains f 55.5 35 0.00076 33.0 6.5 39 71-109 57-97 (185)
307 PF06219 DUF1005: Protein of u 55.3 82 0.0018 34.1 9.6 110 385-497 35-170 (460)
308 KOG1792 Reticulon [Intracellul 50.2 1.1E+02 0.0024 30.8 9.2 38 693-730 131-168 (230)
309 KOG1329 Phospholipase D1 [Lipi 49.6 40 0.00086 40.1 6.8 85 59-149 138-225 (887)
310 PF07162 B9-C2: Ciliary basal 44.7 2.4E+02 0.0051 26.8 10.4 80 364-460 4-103 (168)
311 KOG4027 Uncharacterized conser 44.5 98 0.0021 28.7 7.0 69 384-460 24-110 (187)
312 cd08679 C2_DOCK180_related C2 43.6 63 0.0014 31.1 6.3 52 236-288 56-114 (178)
313 PF07162 B9-C2: Ciliary basal 42.9 2.8E+02 0.006 26.3 10.6 81 202-288 4-102 (168)
314 KOG0904 Phosphatidylinositol 3 40.2 1.4E+02 0.003 35.6 9.1 106 362-473 343-472 (1076)
315 PF02453 Reticulon: Reticulon; 37.5 11 0.00024 35.8 0.0 29 702-730 1-29 (169)
316 PF06219 DUF1005: Protein of u 36.5 1.5E+02 0.0033 32.2 8.0 104 59-163 36-168 (460)
317 PF14909 SPATA6: Spermatogenes 36.2 2.3E+02 0.0049 26.1 8.1 86 40-128 4-101 (140)
318 PF08653 DASH_Dam1: DASH compl 35.1 2.1E+02 0.0045 22.0 6.4 44 675-721 4-47 (58)
319 PF04842 DUF639: Plant protein 33.9 54 0.0012 38.0 4.6 63 686-748 490-555 (683)
320 KOG3543 Ca2+-dependent activat 33.3 2.8E+02 0.006 31.6 9.6 99 39-148 342-444 (1218)
321 KOG2419 Phosphatidylserine dec 32.1 14 0.00031 41.6 -0.2 84 31-125 273-361 (975)
322 PF10409 PTEN_C2: C2 domain of 32.0 3.8E+02 0.0082 24.1 10.2 88 202-291 6-98 (134)
323 KOG4269 Rac GTPase-activating 31.4 21 0.00045 42.1 0.9 67 37-110 758-829 (1112)
324 KOG0904 Phosphatidylinositol 3 31.4 75 0.0016 37.7 5.2 72 31-108 339-421 (1076)
325 PF00957 Synaptobrevin: Synapt 30.8 1.6E+02 0.0034 24.5 6.0 35 680-714 35-69 (89)
326 KOG0860 Synaptobrevin/VAMP-lik 28.9 1.7E+02 0.0037 25.8 5.8 36 681-716 62-97 (116)
327 KOG0694 Serine/threonine prote 28.6 43 0.00094 38.6 2.8 94 58-163 27-122 (694)
328 KOG3385 V-SNARE [Intracellular 28.3 56 0.0012 28.5 2.8 36 671-706 38-73 (118)
329 PF14963 CAML: Calcium signal- 27.4 2.7E+02 0.0059 28.0 7.6 31 605-635 173-203 (263)
330 PRK09458 pspB phage shock prot 26.7 1.9E+02 0.0042 23.3 5.3 20 676-695 42-61 (75)
331 KOG4269 Rac GTPase-activating 26.4 33 0.00072 40.5 1.4 92 360-460 757-855 (1112)
332 PF14924 DUF4497: Protein of u 26.0 3E+02 0.0065 24.1 7.2 67 96-163 26-105 (112)
333 PF10409 PTEN_C2: C2 domain of 24.9 5E+02 0.011 23.2 10.1 89 39-127 5-98 (134)
334 PF14924 DUF4497: Protein of u 24.9 1.8E+02 0.0039 25.5 5.6 64 424-495 28-105 (112)
335 COG4920 Predicted membrane pro 24.8 3.7E+02 0.0079 26.3 7.7 12 744-755 158-169 (249)
336 KOG3142 Prenylated rab accepto 23.2 7E+02 0.015 24.2 9.8 22 601-622 76-97 (187)
337 PRK09697 protein secretion pro 22.9 2.3E+02 0.005 24.5 5.3 7 671-677 123-129 (139)
338 PHA02844 putative transmembran 22.8 2.3E+02 0.005 22.7 4.9 17 693-709 18-34 (75)
339 PHA02975 hypothetical protein; 22.2 2.4E+02 0.0053 22.2 4.9 17 693-709 18-34 (69)
340 PF01544 CorA: CorA-like Mg2+ 22.0 3.2E+02 0.0069 28.2 7.9 70 677-752 197-266 (292)
341 TIGR02302 aProt_lowcomp conser 21.2 7.6E+02 0.016 30.2 11.2 25 706-730 133-157 (851)
342 PF09973 DUF2208: Predicted me 21.0 8.7E+02 0.019 24.5 11.5 37 594-630 1-38 (233)
343 COG5052 YOP1 Protein involved 20.9 4.6E+02 0.01 25.1 7.4 83 686-769 46-151 (186)
344 PHA02650 hypothetical protein; 20.7 3.1E+02 0.0067 22.3 5.3 16 693-708 18-33 (81)
345 KOG0694 Serine/threonine prote 20.2 89 0.0019 36.2 3.2 51 385-436 27-78 (694)
346 PHA02819 hypothetical protein; 20.2 3.3E+02 0.0072 21.6 5.3 16 693-708 18-33 (71)
347 PHA01159 hypothetical protein 20.1 4E+02 0.0086 23.5 6.3 79 677-768 4-82 (114)
No 1
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=100.00 E-value=4.8e-41 Score=304.75 Aligned_cols=156 Identities=79% Similarity=1.402 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004100 618 LPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLAT 697 (773)
Q Consensus 618 ~p~~~l~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~ 697 (773)
+|+++++++++++|+|+++|+.|+|+|.++|+.+.+++||+|||+|..|++++.+.+++||+++++++++|||.||++|+
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At 80 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT 80 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhhccCCccCCCCCCchhhhhhcCCCCccCCC
Q 004100 698 QGERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 773 (773)
Q Consensus 698 ~~e~~~nl~~w~~p~~t~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~~~~P~~r~~~~~~~~~~~~r~ps~~~~~~ 773 (773)
++||++|+++|+||.+|.+++++|+++++++|++|+|+++++||+|++|||++|.++|+.+.|||+||||++|+||
T Consensus 81 ~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l 156 (156)
T PF08372_consen 81 QGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML 156 (156)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.96 E-value=4.4e-27 Score=265.45 Aligned_cols=400 Identities=19% Similarity=0.228 Sum_probs=298.2
Q ss_pred ccCceeEEEEEEEEeecCCCCC--CCCCCCcEEEEEECC-eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCC
Q 004100 33 LVEQMQYLYVRVVKAKDLPPKD--VTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKD 109 (773)
Q Consensus 33 ~~~~~~~L~V~v~~a~~L~~~d--~~~~~dpyv~v~~~~-~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~ 109 (773)
.....|+|.|+|.+|++|...+ ..+..|||+.+.+.+ ...+|++.+++.||+|||+|++.+... ++.|.++|||.+
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n 509 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFN 509 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEecc
Confidence 4578899999999999999888 578999999999887 567999999999999999999999864 688999999988
Q ss_pred CC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEeccCCCCCCcccccccccccccccccc
Q 004100 110 FV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLAN 188 (773)
Q Consensus 110 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 188 (773)
.+ +|+.+|++.++|..|..+... ..+-+.+.. +.+..|+|...+.|.+......... .+. |..
T Consensus 510 ~~~sd~vvG~~~l~L~~L~~~~~~----~ne~~e~~~--~~k~vGrL~yDl~ffp~~e~k~~~~-~s~-------e~~-- 573 (1227)
T COG5038 510 SFKSDKVVGSTQLDLALLHQNPVK----KNELYEFLR--NTKNVGRLTYDLRFFPVIEDKKELK-GSV-------EPL-- 573 (1227)
T ss_pred ccCCcceeeeEEechHHhhhcccc----ccceeeeec--cCccceEEEEeeeeecccCCccccc-ccc-------CCc--
Confidence 88 999999999999999876432 223344332 4456899999998876433211100 000 000
Q ss_pred cccceeccCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEEeecccCCCCCccccceEEEEeeCCCCCeEEEE
Q 004100 189 IRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQ-ALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILT 267 (773)
Q Consensus 189 ~~~~~~~~p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~-~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~ 267 (773)
.+...|.+.+++.++++|..... ....-++.+++..+ .+.|+.++. +.+|.||+++.-.+.+.....+.+.
T Consensus 574 ------ed~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~keV~st~~~k~-t~~~~wn~~~~~~v~~~~ns~~~~~ 645 (1227)
T COG5038 574 ------EDSNTGILKVTLREVKALDELSS-KKDNKSAELYTNAKEVYSTGKLKF-TNHPSWNLQYNVLVTDRKNSSIKVV 645 (1227)
T ss_pred ------ccCCcceeEEEeeccccccCccc-cccceeEEEEecceEEeccceeee-ccCCceeeecceEeccCcceeEEEE
Confidence 01225789999999999975432 22233488888875 455577765 9999999999999988888889999
Q ss_pred EEEccCCCCCceeEEEEEeccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEccCcccCCCCCccCC
Q 004100 268 VEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSS 347 (773)
Q Consensus 268 V~d~~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~ 347 (773)
++|.. ..+.||+...+|.++... ......||++..+ .|+|.+..+..+.|...+
T Consensus 646 ~~d~~---~g~~i~~~~~~l~~li~~---t~dt~~~f~~~~~-------------kg~I~~t~~W~Pi~~~~~------- 699 (1227)
T COG5038 646 TFDVQ---SGKVIATEGSTLPDLIDR---TLDTFLVFPLRNP-------------KGRIFITNYWKPIYNAGG------- 699 (1227)
T ss_pred ecccc---cCceeccccccchHhhhc---cccceEEEEcCCC-------------cceEEEEeccceeecccc-------
Confidence 98864 456888888888887643 4456789999876 688888876544332110
Q ss_pred CCCccccccccCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-eeeeeeccCCCCCccccEEEEEEeCCCce
Q 004100 348 DLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTV 426 (773)
Q Consensus 348 ~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~ 426 (773)
.+....+..++|.++|.|..|.+|... ...+.+|||+++.+++. ++||.....++||.||+....+|..+.+.
T Consensus 700 ---~~s~~~~~~pIg~irv~v~~andl~n~---i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r 773 (1227)
T COG5038 700 ---SSSKTVYDTPIGAIRVSVRKANDLRNE---IPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQR 773 (1227)
T ss_pred ---ccceeeecCccceEEEEeehhhccccc---ccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCccE
Confidence 011222357889999999999999854 56788999999999875 58999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCcccc----CCeEEe---eEEeEeecCCCcccccEEEEEEEEeecc
Q 004100 427 ITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET----DRVYTH---SYPLLVLYPNGVKKMGEIHLAVRFTCSS 497 (773)
Q Consensus 427 l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~----~~~~~~---~~~L~~~~~~g~~~~G~v~l~~~~~~~~ 497 (773)
+.++++|....+ .|..||.+.|+++++.. +..+.. --+.......|.+..|++.+.++|-|..
T Consensus 774 ~~l~~~~~~~sg--------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~ 843 (1227)
T COG5038 774 LTLECMDYEESG--------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAV 843 (1227)
T ss_pred Eeeeeecchhcc--------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeec
Confidence 999999998876 79999999999999865 221111 0011111112334468888888886654
No 3
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.9e-28 Score=260.31 Aligned_cols=226 Identities=32% Similarity=0.514 Sum_probs=190.5
Q ss_pred ccCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEe--cCC
Q 004100 22 ITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSK--DRI 96 (773)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v--~~~ 96 (773)
.|...++..|++ +...|.|+|++|++|+..+..|.+||||++++.. .+.+|++.++++||+|||+|.|.+ .++
T Consensus 153 ~G~l~fsl~Yd~--~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l 230 (421)
T KOG1028|consen 153 VGNLQFSLQYDF--ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEEL 230 (421)
T ss_pred eeeEEEEEEecc--cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHh
Confidence 445566666664 5569999999999999999778899999999986 468999999999999999999997 346
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC--CceeeEEEEEEEEeccCCCCCCccc
Q 004100 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG--DKVRGELMLAVWMGTQADEAFPEAW 173 (773)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~~~~~~~~d~~~~~~~ 173 (773)
....|.+.|||.|++ +++++|++.++|..+..... ...|.+|..... ....|+|.+++.|.+.
T Consensus 231 ~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~-----~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~--------- 296 (421)
T KOG1028|consen 231 SNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLST-----TLFWKDLQPSSTDSEELAGELLLSLCYLPT--------- 296 (421)
T ss_pred ccCEEEEEEEecCCcccccEEEEEEecCcccccccc-----ceeeeccccccCCcccccceEEEEEEeecC---------
Confidence 788999999999999 99999999999998886532 567999988641 1223899999988752
Q ss_pred ccccccccccccccccccceeccCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeecccCCCCCccc
Q 004100 174 HSDAATVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-----QALRTRVSASRTINPMW 248 (773)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~w 248 (773)
.|.|+|.|++|++|..++.++.+||||++.+-. .+.+|.+.++ +.||+|
T Consensus 297 -------------------------~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~ 350 (421)
T KOG1028|consen 297 -------------------------AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVF 350 (421)
T ss_pred -------------------------CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCcc
Confidence 357999999999999999999999999999952 4567777766 999999
Q ss_pred cceEEEEeeCC--CCCeEEEEEEEccCCCCCceeEEEEEeccc
Q 004100 249 NEDLMFVAAEP--FEEHLILTVEDRVAPNKDEVLGKCMIPLQY 289 (773)
Q Consensus 249 ne~f~f~~~~~--~~~~l~i~V~d~~~~~~d~~iG~~~i~L~~ 289 (773)
||+|.|.+... .+..+.|+|||++..+.+++||.|.+....
T Consensus 351 nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 351 NETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred cccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 99999988643 344799999999999999999999888774
No 4
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.7e-25 Score=241.37 Aligned_cols=216 Identities=26% Similarity=0.408 Sum_probs=179.2
Q ss_pred ceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---EEEEeecccCCCCCccccceEEEEeeC--CCCCeEEEEEEEcc
Q 004100 198 KLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN---QALRTRVSASRTINPMWNEDLMFVAAE--PFEEHLILTVEDRV 272 (773)
Q Consensus 198 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~--~~~~~l~i~V~d~~ 272 (773)
+...|.|+|++|++|+.++..|.+||||++++.. .+.+|++.++ ++||.|||+|.|.+.. .....|.++|||+|
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d 243 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYDFD 243 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence 3447999999999999999777899999999974 5789999876 9999999999999643 34668999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEccCcccCCCCCccCCCCCcc
Q 004100 273 APNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPT 352 (773)
Q Consensus 273 ~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~ 352 (773)
.++++++||++.++|..+... .....|.++........ ...|+|.++++.
T Consensus 244 rfsr~~~iGev~~~l~~~~~~----~~~~~w~~l~~~~~~~~------~~~gel~~sL~Y-------------------- 293 (421)
T KOG1028|consen 244 RFSRHDFIGEVILPLGEVDLL----STTLFWKDLQPSSTDSE------ELAGELLLSLCY-------------------- 293 (421)
T ss_pred CcccccEEEEEEecCcccccc----ccceeeeccccccCCcc------cccceEEEEEEe--------------------
Confidence 999999999999998877532 22567999988632221 112899999884
Q ss_pred ccccccCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CC---eeeeeeeccCCCCCccccEEEEEEeCC---C
Q 004100 353 AKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIIDSPTPKWNEQYTWEVFDP---C 424 (773)
Q Consensus 353 ~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~ 424 (773)
.+..|.|+|.|++|++|..+ +..+.+||||++.+ ++ .+.+|.++++++||+|||+|.|.|... .
T Consensus 294 -----~p~~g~ltv~v~kar~L~~~---~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~ 365 (421)
T KOG1028|consen 294 -----LPTAGRLTVVVIKARNLKSM---DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAE 365 (421)
T ss_pred -----ecCCCeEEEEEEEecCCCcc---cCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhhe
Confidence 34459999999999999988 55689999999987 33 347999999999999999999987732 5
Q ss_pred ceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCc
Q 004100 425 TVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLST 460 (773)
Q Consensus 425 ~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~ 460 (773)
..|.|+|||+|.++ ++++||.+.+....
T Consensus 366 ~~l~l~V~d~d~~~--------~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 366 VSLELTVWDHDTLG--------SNDLIGRCILGSDS 393 (421)
T ss_pred eEEEEEEEEccccc--------ccceeeEEEecCCC
Confidence 68999999999987 78899999998875
No 5
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.94 E-value=2.1e-24 Score=243.98 Aligned_cols=412 Identities=22% Similarity=0.286 Sum_probs=287.7
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCe
Q 004100 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDD 114 (773)
Q Consensus 36 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~ 114 (773)
..|++.+++.++++|..... ....-++++++++ ..+.|++++.+.+|.||+++...+.+.....+.+.++|.. ..+
T Consensus 577 n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~--~g~ 653 (1227)
T COG5038 577 NTGILKVTLREVKALDELSS-KKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ--SGK 653 (1227)
T ss_pred CcceeEEEeeccccccCccc-cccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccc--cCc
Confidence 35899999999999975431 2223348888887 4677899999999999999999998877888999999875 467
Q ss_pred eeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEeccCCCCCCccccccccccccccccccccccee
Q 004100 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVY 194 (773)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (773)
.+|....+|.++.... .....||++..+ +|+|.++..+.|.... ....+..+
T Consensus 654 ~i~~~~~~l~~li~~t----~dt~~~f~~~~~-----kg~I~~t~~W~Pi~~~-------------------~~~~s~~~ 705 (1227)
T COG5038 654 VIATEGSTLPDLIDRT----LDTFLVFPLRNP-----KGRIFITNYWKPIYNA-------------------GGSSSKTV 705 (1227)
T ss_pred eeccccccchHhhhcc----ccceEEEEcCCC-----cceEEEEeccceeecc-------------------ccccceee
Confidence 8899999998888652 346789998754 4788888765542110 01122334
Q ss_pred ccCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccC
Q 004100 195 LSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-QALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVA 273 (773)
Q Consensus 195 ~~p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~ 273 (773)
....+|.++|.|..|.++......+.+|||+++.+++ .++||-.... +.||.||+....++..+ .+.+.++++|+..
T Consensus 706 ~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~~k~rti~~~~-~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~ 783 (1227)
T COG5038 706 YDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSS-TLNPIWNEILYVPVTSK-NQRLTLECMDYEE 783 (1227)
T ss_pred ecCccceEEEEeehhhcccccccCcccccceEEEecceeEEEEecccC-ccccceeeeEEEEecCC-ccEEeeeeecchh
Confidence 5577899999999999999888889999999999998 5677777655 99999999998888775 3469999999999
Q ss_pred CCCCceeEEEEEeccccccccCCCCC--------------------------CceEEEcccCccc---------cccc--
Q 004100 274 PNKDEVLGKCMIPLQYVDKRLDHKPV--------------------------NTRWYNLEKHIVV---------EGEK-- 316 (773)
Q Consensus 274 ~~~d~~iG~~~i~L~~l~~~~~~~~~--------------------------~~~w~~L~~~~~~---------~~~~-- 316 (773)
.+.|..+|++.++++++..+.++... ..+.|+....... +.+.
T Consensus 784 sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~ 863 (1227)
T COG5038 784 SGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRK 863 (1227)
T ss_pred ccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHH
Confidence 99999999999999998763221100 0011111000000 0000
Q ss_pred ---------c---------------------cC--------------CceeeEE--------------EEEEEEcc-Ccc
Q 004100 317 ---------K---------------------KD--------------TKFASRI--------------HMRICLEG-GYH 337 (773)
Q Consensus 317 ---------~---------------------~~--------------~~~~G~l--------------~l~i~~~~-~~~ 337 (773)
. .+ .-..|-+ .+.+-++. .|.
T Consensus 864 ~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~ 943 (1227)
T COG5038 864 SEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHP 943 (1227)
T ss_pred hhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCc
Confidence 0 00 0001111 11111211 110
Q ss_pred cCCCCC--------c-----------c--------C----CC-------C-----------Ccc-----c--c-------
Q 004100 338 VLDEST--------H-----------Y--------S----SD-------L-----------RPT-----A--K------- 354 (773)
Q Consensus 338 ~~~~~~--------~-----------~--------~----~~-------~-----------~p~-----~--~------- 354 (773)
..-.+. . + . +| + .|. + .
T Consensus 944 ~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~ 1023 (1227)
T COG5038 944 QIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSY 1023 (1227)
T ss_pred eeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEE
Confidence 000000 0 0 0 00 0 000 0 0
Q ss_pred ---------ccccCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-eeeeeeccCCCCCccccEEEEEEeC-C
Q 004100 355 ---------QLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFD-P 423 (773)
Q Consensus 355 ---------~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~-~ 423 (773)
..+-.+.|.|.|.+..|.||+.. |.+|.+||||++.++++ .++|+++++++||+|||++..+|.. .
T Consensus 1024 tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~---d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~ 1100 (1227)
T COG5038 1024 TPVPVKLPPVEMVENSGYLTIMLRSGENLPSS---DENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRV 1100 (1227)
T ss_pred eecccccCcceeecccCcEEEEEeccCCCccc---ccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccc
Confidence 00123579999999999999987 66799999999999887 6899999999999999999999994 5
Q ss_pred CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004100 424 CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 424 ~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
.+.++|.|+|||.-. +++.||++.|+|+.+..+..+....+|.+.. .+ ...|.++....|
T Consensus 1101 ~D~~~i~v~Dwd~~~--------knd~lg~~~idL~~l~~~~~~n~~i~ldgk~-~~-~~~g~~~~~~~~ 1160 (1227)
T COG5038 1101 KDVLTINVNDWDSGE--------KNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT-FI-VLDGTLHPGFNF 1160 (1227)
T ss_pred cceEEEEEeecccCC--------CccccccccccHhhcCcCCccceeeeccCcc-eE-ecccEeecceec
Confidence 889999999998743 8999999999999999999998889886532 11 234555555555
No 6
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.89 E-value=1.7e-23 Score=231.98 Aligned_cols=283 Identities=21% Similarity=0.277 Sum_probs=180.5
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEE--EeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCC
Q 004100 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQAL--RTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAP 274 (773)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~ 274 (773)
|..-.++|++++|-+|.+.|.+|.+||||++.+|++.. +...+.+ |+||+|++.|.+....+.+..++++|||+|..
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLIVEVYDHDLE 688 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcceeEEEEeecc
Confidence 55567899999999999999999999999999998763 4555666 99999999999999999999999999999999
Q ss_pred CCCceeEEEEEeccc-cccccCCCCCCce---------EEEcccCccc------ccccccCCceeeEEEEEEEEccCcc-
Q 004100 275 NKDEVLGKCMIPLQY-VDKRLDHKPVNTR---------WYNLEKHIVV------EGEKKKDTKFASRIHMRICLEGGYH- 337 (773)
Q Consensus 275 ~~d~~iG~~~i~L~~-l~~~~~~~~~~~~---------w~~L~~~~~~------~~~~~~~~~~~G~l~l~i~~~~~~~- 337 (773)
+.|+.||+..++|+. .....+.+....+ |..-.++... .++. ..--+.+.. ..+.+.+...
T Consensus 689 ~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i-~~P~~~~e~-~~i~~~g~~~~ 766 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGI-PRPYYSYEV-SAIKWKGESDI 766 (1105)
T ss_pred cccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCC-CCCeecCCc-ceEEecChhhh
Confidence 999999999999985 3333333333322 3322111100 0000 000000000 0111111000
Q ss_pred ------------------------------cCCCC----CccCC------------------------CCCccccccccC
Q 004100 338 ------------------------------VLDES----THYSS------------------------DLRPTAKQLWKS 359 (773)
Q Consensus 338 ------------------------------~~~~~----~~~~~------------------------~~~p~~~~~~~~ 359 (773)
...+. +.++. .+.++. ..+
T Consensus 767 ~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itp---r~~ 843 (1105)
T KOG1326|consen 767 YDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITP---RKP 843 (1105)
T ss_pred hcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCC---CCh
Confidence 00000 00000 001110 123
Q ss_pred ccceEEEEEEEccCCCCCccC-CCCCCCCcEEEEEECC---eeeeeeeccCCC----CCccccEEEEEE-----------
Q 004100 360 SIGVLELGILNAQGLMPMKTK-DGRGTTDAYCVAKYGQ---KWVRTRTIIDSP----TPKWNEQYTWEV----------- 420 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~-~~~~~~dpyv~v~~~~---~~~~T~~~~~t~----~P~wne~~~f~v----------- 420 (773)
....++|.|-.-.++...|.. -+...+|.||+-.+-+ ++++|.+.++++ |-.|.-.|-|.-
T Consensus 844 ~~~~lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~k 923 (1105)
T KOG1326|consen 844 KKYELRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAK 923 (1105)
T ss_pred hheeEEEEEeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhh
Confidence 446788887777776654332 1233599999998843 458999988765 555643333311
Q ss_pred -------eC----CCceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccc----------------------cCCeE
Q 004100 421 -------FD----PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE----------------------TDRVY 467 (773)
Q Consensus 421 -------~~----~~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~----------------------~~~~~ 467 (773)
.+ ....|.|+|||.|.++ +|++||..+++|+++. ..+.+
T Consensus 924 ke~~ws~dete~k~p~rl~iqiWD~d~fs--------~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v 995 (1105)
T KOG1326|consen 924 KEYSWSLDETEFKIPARLIIQIWDNDKFS--------KDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTV 995 (1105)
T ss_pred hhhccccccccccCchheEEEecccCccC--------hhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccc
Confidence 01 1347999999999998 9999999999999982 13456
Q ss_pred EeeEEeEeecCCCcccccEEEEEEEE
Q 004100 468 THSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 468 ~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
.+||||.+.+.....-+|.+++.+.+
T Consensus 996 ~GWwP~~a~~~~~~~l~Gkvem~lei 1021 (1105)
T KOG1326|consen 996 KGWWPCQAEEGDAKVLAGKVEMSLEI 1021 (1105)
T ss_pred cccceeeecCCCcceecceeeeehhh
Confidence 78999998743322348999998876
No 7
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.89 E-value=4.9e-22 Score=185.81 Aligned_cols=149 Identities=69% Similarity=1.135 Sum_probs=128.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCceeE
Q 004100 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLG 281 (773)
Q Consensus 202 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d~~iG 281 (773)
|+|+|++|++|+..+.+|.+||||++.++++.++|+++.+++.||.|||.|.|.+.++..+.+.|+|+|++..+++++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 78999999999999999999999999999999999998654699999999999998777779999999999888899999
Q ss_pred EEEEeccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEccCcccCCCCCccCCCCCc
Q 004100 282 KCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRP 351 (773)
Q Consensus 282 ~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p 351 (773)
++.++|+++....+.+....+||+|.+....+. .++..+..|+|++++++.+.|++.+++.+|++|++|
T Consensus 82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~-~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGAME-QKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred EEEEEHHHCcccCCCCccCCceEECcCCCCccc-ccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 999999998754334456789999998632111 123446789999999999999999999999999875
No 8
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.88 E-value=5.7e-22 Score=178.53 Aligned_cols=125 Identities=69% Similarity=1.174 Sum_probs=106.3
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 004100 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~ 442 (773)
.|+|+|++|+||+.+...|..|.+||||++++|+++.||+++++++||+|||+|.|.+.++...|+|+|||++..+- +.
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~-~~ 79 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHW-KE 79 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccc-cc
Confidence 37899999999433333377799999999999999999999999999999999999999888899999999987510 00
Q ss_pred CCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEE
Q 004100 443 AGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHL 489 (773)
Q Consensus 443 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l 489 (773)
...+|++||++.|+++.+..+..+..||||.+.+.+|.++.|+|++
T Consensus 80 -~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 80 -AVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred -cCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 0126899999999999999999999999999888777778898875
No 9
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.88 E-value=6e-22 Score=212.60 Aligned_cols=246 Identities=21% Similarity=0.374 Sum_probs=191.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCce
Q 004100 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-QALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEV 279 (773)
Q Consensus 201 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d~~ 279 (773)
.|+|.|.||+||+..+.+|..||||.|.+.+ ...+|.++.+ ++.|.|.|+|.|.+...+ ..|.|.|||.| +++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~F-~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRTF-RYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcce-eeEEEEEeccc-cccccc
Confidence 5899999999999999999999999999987 5789999987 999999999999997644 47999999999 999999
Q ss_pred eEEEEEeccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEccCcccCCCCCccCCCCCccccccccC
Q 004100 280 LGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKS 359 (773)
Q Consensus 280 iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 359 (773)
||.+.|.-.+|... +..+.|+.|.+-+ .+..+.|++++++.+.....
T Consensus 83 IGKvai~re~l~~~----~~~d~W~~L~~VD-------~dsEVQG~v~l~l~~~e~~~---------------------- 129 (800)
T KOG2059|consen 83 IGKVAIKREDLHMY----PGKDTWFSLQPVD-------PDSEVQGKVHLELALTEAIQ---------------------- 129 (800)
T ss_pred cceeeeeHHHHhhC----CCCccceeccccC-------CChhhceeEEEEEEeccccC----------------------
Confidence 99999998888642 3578999999863 34468999999998643310
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCee----eeeeeccCCCCCccccEEEEEEeCC------------
Q 004100 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW----VRTRTIIDSPTPKWNEQYTWEVFDP------------ 423 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~----~~T~~~~~t~~P~wne~~~f~v~~~------------ 423 (773)
...+...++.++++.+. .++.+||||++...+.. .+|+++++|.+|.|+|.|.|.+...
T Consensus 130 -~~~~~c~~L~~r~~~P~----~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~ 204 (800)
T KOG2059|consen 130 -SSGLVCHVLKTRQGLPI----INGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPE 204 (800)
T ss_pred -CCcchhhhhhhcccCce----eCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcc
Confidence 01223334445555553 23459999999987655 4999999999999999999988743
Q ss_pred ----CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcc-----cccEEEEEEEEe
Q 004100 424 ----CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-----KMGEIHLAVRFT 494 (773)
Q Consensus 424 ----~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-----~~G~v~l~~~~~ 494 (773)
-..|+|.+|++..+. ..++|+|++++++..+........||-|..... |.+ ..|.+++.+.++
T Consensus 205 ~e~~~l~irv~lW~~~~~~-------~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~-g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 205 EEDDMLEIRVDLWNDLNLV-------INDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPN-GEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred cCCceeeEEEeeccchhhh-------hhhhhceeEEeehhhhhhccCccceEEEecCCC-cccCCCCCCccceeeeEEee
Confidence 347889999854331 268999999999999886666789999976433 321 247777777764
Q ss_pred e
Q 004100 495 C 495 (773)
Q Consensus 495 ~ 495 (773)
-
T Consensus 277 ~ 277 (800)
T KOG2059|consen 277 E 277 (800)
T ss_pred e
Confidence 3
No 10
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.88 E-value=6.5e-22 Score=212.35 Aligned_cols=249 Identities=21% Similarity=0.320 Sum_probs=196.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeeeE
Q 004100 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMG 117 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG 117 (773)
.|+|+|.+|+||++.+..|+.||||.|.++. ...||.++.+++.|.|.|.|+|.+.. .-..|.|-|||.|..+|+.||
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~-~F~~l~fYv~D~d~~~D~~IG 84 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPR-TFRYLSFYVWDRDLKRDDIIG 84 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCc-ceeeEEEEEeccccccccccc
Confidence 6899999999999999999999999999997 57999999999999999999999875 357799999999933999999
Q ss_pred EEEEEcCccCCCCCCCCCCcCeEEEeeeCC-CCceeeEEEEEEEEeccCCCCCCcccccccccccccccccccccceecc
Q 004100 118 RVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLS 196 (773)
Q Consensus 118 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (773)
.+.|.=.+|...+ ..+.|+.|..-. ..+.+|+|++++.+.....
T Consensus 85 Kvai~re~l~~~~-----~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~------------------------------ 129 (800)
T KOG2059|consen 85 KVAIKREDLHMYP-----GKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ------------------------------ 129 (800)
T ss_pred eeeeeHHHHhhCC-----CCccceeccccCCChhhceeEEEEEEeccccC------------------------------
Confidence 9999988887653 357899998876 4468899999986643111
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECCE----EEEeecccCCCCCccccceEEEEeeCC-------------
Q 004100 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQ----ALRTRVSASRTINPMWNEDLMFVAAEP------------- 259 (773)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~----~~kT~~~~~~t~nP~wne~f~f~~~~~------------- 259 (773)
...+...+++++++.+... +.+|||+++...+. ..+|++.++ |.+|.|+|.|.|.+...
T Consensus 130 --~~~~~c~~L~~r~~~P~~~-~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~ 205 (800)
T KOG2059|consen 130 --SSGLVCHVLKTRQGLPIIN-GQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEE 205 (800)
T ss_pred --CCcchhhhhhhcccCceeC-CCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCccc
Confidence 0124555667777776654 45999999999763 358888877 99999999999988654
Q ss_pred --CCCeEEEEEEE-ccCCCCCceeEEEEEeccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEc
Q 004100 260 --FEEHLILTVED-RVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLE 333 (773)
Q Consensus 260 --~~~~l~i~V~d-~~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~ 333 (773)
....|.+.+|+ ++....+.++|++.+++..+.. ......||-|.+.+ .+++..+++-.|.+.+.+++.
T Consensus 206 e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~----~s~p~~W~~Lqp~~--~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 206 EDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQ----KSSPAAWYYLQPRP--NGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred CCceeeEEEeeccchhhhhhhhhceeEEeehhhhhh----ccCccceEEEecCC--CcccCCCCCCccceeeeEEee
Confidence 22357788888 4556679999999999998763 23477899999874 333344556678888888754
No 11
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.86 E-value=2.9e-21 Score=172.85 Aligned_cols=118 Identities=23% Similarity=0.380 Sum_probs=103.8
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccC-CCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIID-SPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG 440 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~ 440 (773)
|.|+|+|++|++|+.. + .|++||||++.+|++++||+++.+ +.||+|||+|.|++.+....|.|+|||+|.++
T Consensus 2 g~L~v~v~~Ak~l~~~---~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~-- 75 (121)
T cd04016 2 GRLSITVVQAKLVKNY---G-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT-- 75 (121)
T ss_pred cEEEEEEEEccCCCcC---C-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc--
Confidence 8999999999998754 3 578999999999999999999876 89999999999999877788999999999886
Q ss_pred CCCCCCCCCccEEEEEecC-ccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004100 441 DKAGGARDSRIGKVRIRLS-TLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 441 ~~~~~~~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
+|++||.+.|++. .+..++..+.||+|... +|..+.|+|+|.++|
T Consensus 76 ------~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~--~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ------MDERIAWTHITIPESVFNGETLDDWYSLSGK--QGEDKEGMINLVFSY 121 (121)
T ss_pred ------CCceEEEEEEECchhccCCCCccccEeCcCc--cCCCCceEEEEEEeC
Confidence 8999999999996 68888888999999753 344567999999875
No 12
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.86 E-value=5.6e-21 Score=171.01 Aligned_cols=117 Identities=20% Similarity=0.320 Sum_probs=102.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCC-CCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004100 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEK-KTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~-~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (773)
|.|.|+|++|++++..+ .|++||||++++++++++|+++.+ +.||+|||+|.|.+.+. ...|.|+|||.|.+ +|++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMDER 79 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCCce
Confidence 78999999999998777 789999999999999999999865 79999999999999753 46799999999998 8999
Q ss_pred eEEEEEEcCc-cCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEE
Q 004100 116 MGRVLFDLNE-IPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (773)
Q Consensus 116 lG~~~i~l~~-l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (773)
||++.+++.+ +..+ ...+.||+|....+....|+|++++.|
T Consensus 80 iG~~~i~l~~~~~~g-----~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNG-----ETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCC-----CCccccEeCcCccCCCCceEEEEEEeC
Confidence 9999999964 5543 236899999987776678999999865
No 13
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.85 E-value=7.4e-21 Score=171.85 Aligned_cols=121 Identities=74% Similarity=1.243 Sum_probs=108.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeeeEE
Q 004100 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGR 118 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~ 118 (773)
+|.|+|++|+||+.. .+||||++.+++++.+|++++++.||+|||+|.|.+..+....|.|+|||++..++++||+
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~ 76 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGG 76 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeee
Confidence 489999999999876 6899999999999999999999999999999999987767789999999999778999999
Q ss_pred EEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEec
Q 004100 119 VLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 119 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
+.++++++..+...++....+||+|.+..+.+.+|+|++++||++
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~~ 121 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFGT 121 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEecC
Confidence 999999998765444556789999999877678899999999973
No 14
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.83 E-value=2.9e-20 Score=170.05 Aligned_cols=118 Identities=25% Similarity=0.411 Sum_probs=101.5
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeC------CCceEEEEEEeCCCC
Q 004100 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD------PCTVITIGVFDNCHL 437 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~------~~~~l~v~v~d~~~~ 437 (773)
++|+|++|+||+.+ +..|.+||||++.++++++||+++++++||+|||.|.|.+.. ....|.+.|||++.+
T Consensus 1 ~~V~V~~A~~L~~~---d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCK---GKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCC---CCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999986 456889999999999999999999999999999999999976 367999999999987
Q ss_pred CCCCCCCCCCCCccEEEEEecCccc--cCCeEEeeEEeEeecCCCcccccEEEEEEE
Q 004100 438 HGGDKAGGARDSRIGKVRIRLSTLE--TDRVYTHSYPLLVLYPNGVKKMGEIHLAVR 492 (773)
Q Consensus 438 ~~~~~~~~~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~ 492 (773)
+ +|++||++.|+++++. .+.....||+|.....+..+..|+|+|+++
T Consensus 78 ~--------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 G--------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred C--------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 6 7999999999999987 667788999997644333345699998874
No 15
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.83 E-value=8.2e-20 Score=167.06 Aligned_cols=117 Identities=31% Similarity=0.562 Sum_probs=101.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecC-----CCCceEEEEEEeCCCC-CC
Q 004100 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDR-----IQSSVLEVTVKDKDFV-KD 113 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~-----~~~~~l~i~V~d~~~~-~d 113 (773)
++|+|++|+||+..+..|.+||||++++++++++|++++++.||+|||+|.|.+.. +....|.|+|||.+.+ +|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999999888999999999999999999999999999999999999865 3567899999999988 89
Q ss_pred eeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC--CceeeEEEEEE
Q 004100 114 DFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG--DKVRGELMLAV 159 (773)
Q Consensus 114 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~~ 159 (773)
++||++.|+|.++.... .....+||+|....+ .+..|+|++++
T Consensus 81 ~~iG~~~i~l~~l~~~~---~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 81 KFLGQVSIPLNDLDEDK---GRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred ceeEEEEEEHHHhhccC---CCcccEEEECcCCCCCCccccceEEEEe
Confidence 99999999999987422 223579999987554 24679999886
No 16
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.82 E-value=4.2e-20 Score=167.70 Aligned_cols=95 Identities=28% Similarity=0.519 Sum_probs=89.2
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCC
Q 004100 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHG 439 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~ 439 (773)
..|.|+|.|++|.||... |..++|||||++++|+++.||+++++++||+|||.|+|.+.+++..|++.|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~r---D~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs- 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIR---DFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS- 79 (168)
T ss_pred cceEEEEEEEeecCeeee---ccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence 459999999999999876 5558999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCccEEEEEecCccccCC
Q 004100 440 GDKAGGARDSRIGKVRIRLSTLETDR 465 (773)
Q Consensus 440 ~~~~~~~~d~~lG~~~i~l~~l~~~~ 465 (773)
.||+||.+.|+|..+....
T Consensus 80 -------~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 80 -------SDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred -------cccccceeeeccHHHHHHh
Confidence 8999999999999997765
No 17
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.82 E-value=1.8e-19 Score=163.64 Aligned_cols=120 Identities=28% Similarity=0.388 Sum_probs=106.1
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-eeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 004100 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 441 (773)
.|+|+|++|+||+.. +..|.+||||++.+++ ..++|+++.++.||.|||.|.|.+.++...|.|+|||++..+
T Consensus 1 ~L~v~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~--- 74 (121)
T cd04042 1 QLDIHLKEGRNLAAR---DRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL--- 74 (121)
T ss_pred CeEEEEEEeeCCCCc---CCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC---
Confidence 378999999999987 4458899999999987 578999999999999999999999887889999999999876
Q ss_pred CCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEEee
Q 004100 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~ 495 (773)
+|++||++.++++++..+.....|++|.+.+ +.+..|+|++.++|+|
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 -----TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLTP 121 (121)
T ss_pred -----CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEECC
Confidence 7999999999999999998899999996532 3356799999999854
No 18
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=2.5e-19 Score=167.62 Aligned_cols=124 Identities=31% Similarity=0.543 Sum_probs=107.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCC-CCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004100 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEK-KTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~-~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (773)
+|+|+|++|+||+..+..|.+||||++++++++.+|+++.+ +.||+|||+|.|.+.++..+.|.|+|+|.+.. +|++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 48999999999999999999999999999999999999966 69999999999999776667899999999987 89999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC-------CceeeEEEEEEEEec
Q 004100 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG-------DKVRGELMLAVWMGT 163 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-------~~~~G~i~l~~~~~~ 163 (773)
|++.++|.++..+. .......+||+|.+..+ .+..|+|++.+.+..
T Consensus 81 G~v~i~L~~l~~~~-~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 81 GRAVIPLNDIERRV-DDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred EEEEEEHHHCcccC-CCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 99999999997542 12345689999998754 356799999998863
No 19
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.81 E-value=3.7e-19 Score=168.28 Aligned_cols=123 Identities=25% Similarity=0.330 Sum_probs=107.8
Q ss_pred ceEEEEEEEccCCCCCccC---------------------------CCCCCCCcEEEEEECCee-eeeeeccCCCCCccc
Q 004100 362 GVLELGILNAQGLMPMKTK---------------------------DGRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWN 413 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~---------------------------~~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wn 413 (773)
|.|.|+|++|++|+++|.. .+.|.+||||+|.+++.. .||++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 8999999999999998731 246779999999999865 699999999999999
Q ss_pred cEEEEEEeCCCceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004100 414 EQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 414 e~~~f~v~~~~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
|+|.|.+.++.+.|.|.|+|+|.++ +++||++.|+++++..+.....||+|.....++.+..|+|+++++|
T Consensus 87 E~F~~~~~~~~~~l~~~V~d~d~~~---------~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAHYASHVEFTVKDNDVVG---------AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred eEEEEEccCCCCEEEEEEEeCCCcC---------CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 9999999888889999999998763 6899999999999998988999999987655555556899999998
No 20
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.80 E-value=5.7e-19 Score=161.74 Aligned_cols=119 Identities=38% Similarity=0.513 Sum_probs=103.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCC---CCceEEEEEEeCCCC--CCe
Q 004100 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI---QSSVLEVTVKDKDFV--KDD 114 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~---~~~~l~i~V~d~~~~--~d~ 114 (773)
|+|+|++|++|+..+..+.+||||++.+++++++|++++++.||+|||+|.|.+.+. ....|.|+|||.+.. +++
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~ 81 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRS 81 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCC
Confidence 899999999999998889999999999999999999999999999999999998643 246899999999876 799
Q ss_pred eeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC-CCceeeEEEEEEEEe
Q 004100 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELMLAVWMG 162 (773)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~~~~~ 162 (773)
+||++.+++.++... .....+||+|+.+. ..+.+|+|.+++++.
T Consensus 82 ~lG~v~i~l~~l~~~----~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 82 FLGRVRISGTSFVPP----SEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred eeeEEEEcHHHcCCC----CCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 999999999999832 23467999999764 234689999999874
No 21
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.80 E-value=7e-19 Score=159.71 Aligned_cols=118 Identities=29% Similarity=0.485 Sum_probs=105.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004100 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (773)
+|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+.+. ...|.|+|||.+.. +|++|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcce
Confidence 4899999999999999889999999999988 678999999999999999999998765 57899999999998 99999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEe
Q 004100 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (773)
|.+.+++.++..+.. ...|++|.+..+.+..|+|++.+.+.
T Consensus 80 G~~~~~l~~l~~~~~-----~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 80 GSAFVDLSTLELNKP-----TEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEEEHHHcCCCCC-----eEEEEECCCCCCccCceEEEEEEEEC
Confidence 999999999986532 56899998876656789999998775
No 22
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=99.80 E-value=3.9e-19 Score=193.80 Aligned_cols=180 Identities=22% Similarity=0.332 Sum_probs=152.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHHHHHccch--hHHHHHHHHHHHHhhcccc-CCCC
Q 004100 563 SMRRSKANFFRIMGVLSGIIAVGKWFDQICNWKNPITTVLIHILFIILVLYPEL--ILPTVFLYLFLIGVWYYRW-RPRH 639 (773)
Q Consensus 563 s~~~~~~n~~Rl~~~~~~~~~~~~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l--~~p~~~l~l~~~~~~~~~~-~~~~ 639 (773)
...-+-+|+.-|++++.|+..++.+++.+.+||+|.+|+.|++++++++|..|+ ++|++++++++.|++.+.. +.+.
T Consensus 481 kveGI~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~ 560 (683)
T PF04842_consen 481 KVEGIDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLGK 560 (683)
T ss_pred hhcCCccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 344567899999999999999999999999999999999999999999999887 6999999999999997664 3332
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCCChhhHHHHHH
Q 004100 640 PPHMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVI 719 (773)
Q Consensus 640 ~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~nl~~w~~p~~t~~~~~ 719 (773)
+. ++....++... .-.+++-++|+.+.++++.|+.++.++.|+|+++.|..|++|..+++
T Consensus 561 ~~------------------~~v~V~~pP~~--nTvEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~ 620 (683)
T PF04842_consen 561 SF------------------GEVTVRDPPPK--NTVEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVAL 620 (683)
T ss_pred cc------------------ceEEecCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 21 22222111122 22489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHhhhhhh-hccCCccCCCCCCchhhhhhcC
Q 004100 720 FCLIAAIVLYVTPFQVVALLTGFY-VLRHPRFRHKLPSVPLNFFRRL 765 (773)
Q Consensus 720 ~l~~~~~~~~~vP~r~i~l~~g~~-~~~~P~~r~~~~~~~~~~~~r~ 765 (773)
+++++|+++.++|+||++++..+. |+|+..+|+. +...|.||+
T Consensus 621 ~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr~---s~er~~RRl 664 (683)
T PF04842_consen 621 ALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRRE---SSERFNRRL 664 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchh---hHHHHHHHH
Confidence 999999999999999999998888 8999889986 666776664
No 23
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.80 E-value=6e-19 Score=158.96 Aligned_cols=113 Identities=31% Similarity=0.407 Sum_probs=97.9
Q ss_pred EEEEEEEEeec---CCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC----
Q 004100 39 YLYVRVVKAKD---LPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV---- 111 (773)
Q Consensus 39 ~L~V~v~~a~~---L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~---- 111 (773)
.|.|+|++|+| |+..|..|++||||++++++++.+|++++++.||+|||+|.|.+.+. ...|.|+|||.+..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~~~~ 79 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHWKE 79 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCccccc
Confidence 38999999999 88889999999999999999999999999999999999999999764 45899999999875
Q ss_pred ---CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC--CCceeeEEEE
Q 004100 112 ---KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK--GDKVRGELML 157 (773)
Q Consensus 112 ---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l 157 (773)
+|++||++.++|..+..+. ....||+|.+.. +.+..|+|.+
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 80 AVQPDVLIGKVRIRLSTLEDDR-----VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cCCCCceEEEEEEEHHHccCCC-----EEeeEEEeEeCCCCCccCCcEEEe
Confidence 8999999999999998653 357899999765 2334577764
No 24
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.80 E-value=9.3e-19 Score=161.27 Aligned_cols=124 Identities=30% Similarity=0.519 Sum_probs=105.6
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-C
Q 004100 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K 112 (773)
Q Consensus 34 ~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~ 112 (773)
-+.+|.|+|+|++|++|+..+..|.+||||++.++++.++|++++++.||.|||+|.|.+.++..+.|.|+|||.+.. +
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 367799999999999999999889999999999999999999999999999999999999877778999999999988 8
Q ss_pred CeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEE
Q 004100 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (773)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (773)
|++||++.+++.++............+|..|.. ...|+|++++.+
T Consensus 91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~----~~~g~i~l~~~~ 135 (136)
T cd08375 91 DDFLGRTEIRVADILKETKESKGPITKRLLLHE----VPTGEVVVKLDL 135 (136)
T ss_pred CCeeEEEEEEHHHhccccccCCCcEEEEecccc----ccceeEEEEEEe
Confidence 999999999999998632222233446666632 346999999865
No 25
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.80 E-value=9.7e-19 Score=158.04 Aligned_cols=119 Identities=28% Similarity=0.420 Sum_probs=102.6
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-eeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 004100 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~ 442 (773)
|.|.|++|+||++++. ..|.+||||.+.++++ ..+|+++++|+||.|||+|.|.+.+....|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~~--~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~---- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSG--PNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR---- 75 (121)
T ss_pred eEEEEEEccCCCCCCC--CCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence 6799999999998642 2468999999999876 57999999999999999999999876789999999999876
Q ss_pred CCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004100 443 AGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 443 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
+|++||++.++++++..++....||+|......+. ..|+|+|+++|
T Consensus 76 ----~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~ 121 (121)
T cd08401 76 ----RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-VQGKVHLELRL 121 (121)
T ss_pred ----CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-ccEEEEEEEEC
Confidence 79999999999999988888899999976544332 46999998875
No 26
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.79 E-value=8.8e-19 Score=158.47 Aligned_cols=117 Identities=29% Similarity=0.451 Sum_probs=102.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccC-CCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeee
Q 004100 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFE-KKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFM 116 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~-~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~l 116 (773)
|.|+|+|++|+||+..+..+.+||||++.+++++.+|+++. ++.||+|||.|.|.+.....+.|.|+|||.+..+|++|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~i 80 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLI 80 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcce
Confidence 57999999999999999889999999999999999999885 57899999999999976556889999999987778999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEE
Q 004100 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (773)
|++.+++.++..+. ...+|++|.... +..|+|++++.|
T Consensus 81 G~~~~~l~~~~~~~-----~~~~w~~L~~~~--~~~G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEG-----EFDDWYELTLKG--RYAGEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcC-----CCCCcEEeccCC--cEeeEEEEEEEC
Confidence 99999999987642 257999998643 467999998864
No 27
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.79 E-value=8e-19 Score=158.86 Aligned_cols=110 Identities=31% Similarity=0.531 Sum_probs=96.0
Q ss_pred CcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEe---cC
Q 004100 24 GDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSK---DR 95 (773)
Q Consensus 24 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v---~~ 95 (773)
...++++|+ .+.|.|+|++|+||+..+ .+.+||||++++.+ .+++|++++++.||+|||+|.|.+ .+
T Consensus 3 ~l~~~l~y~----~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~ 77 (122)
T cd08381 3 QVKLSISYK----NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVED 77 (122)
T ss_pred eEEEEEEEe----CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHH
Confidence 457888888 468999999999999999 89999999999973 468999999999999999999986 34
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEe
Q 004100 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (773)
+....|.|+|||++.. ++++||++.++|.++..+. ....||+|
T Consensus 78 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L 121 (122)
T cd08381 78 LQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQ-----ETEKWYPL 121 (122)
T ss_pred hCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCC-----CccceEEC
Confidence 5678999999999988 8999999999999998653 35789987
No 28
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=99.79 E-value=7.7e-19 Score=191.29 Aligned_cols=214 Identities=21% Similarity=0.322 Sum_probs=156.0
Q ss_pred CCCccccccchhhHHHHH-HHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHHHHHccchhHHHHHHHHHHHHh----h
Q 004100 557 VGSHMWSMRRSKANFFRI-MGVLSGIIAVGKWFDQICNWKNPITTVLIHILFIILVLYPELILPTVFLYLFLIGV----W 631 (773)
Q Consensus 557 ~~~~~~s~~~~~~n~~Rl-~~~~~~~~~~~~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l~~p~~~l~l~~~~~----~ 631 (773)
++.++||..+||+|++|| ..++-.+.++.+++.+|.+|++|+||++||++|++ +|+.++++|+++..++++.+ +
T Consensus 83 a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~-aW~~dll~p~~~~~L~~li~~P~~r 161 (642)
T PF11696_consen 83 AEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFI-AWLLDLLVPAFFAFLIALILSPPAR 161 (642)
T ss_pred cccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccc
Confidence 788999999999999999 55888999999999999999999999999999988 99999999999987777666 5
Q ss_pred ccccCCCCCCCCCCCcCCC-----------CC--------------------------------------CCCCCCCCCC
Q 004100 632 YYRWRPRHPPHMDTRLSHA-----------DS--------------------------------------AHPDELDEEF 662 (773)
Q Consensus 632 ~~~~~~~~~~~~~~~~s~~-----------~~--------------------------------------~~~~~~~~e~ 662 (773)
.++++|.+++.++....+. ++ +++++..++.
T Consensus 162 ~~lFPpap~alvd~~tgg~qkP~aGvLgs~dS~TGAPE~~KGEAvEqEAsNfV~siasvav~saaGK~~q~~p~~~~~~~ 241 (642)
T PF11696_consen 162 SILFPPAPPALVDSKTGGVQKPKAGVLGSDDSVTGAPENHKGEAVEQEASNFVNSIASVAVSSAAGKHPQGDPDDDPEED 241 (642)
T ss_pred cccCCCCCcccccCCCCCccccccccccccccccCCCccccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCccC
Confidence 6788887766555332100 00 0112111111
Q ss_pred -CCCCC-------------------CCChhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCCChh--------hH
Q 004100 663 -DTFPT-------------------SRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPR--------AT 714 (773)
Q Consensus 663 -~~~~~-------------------~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~nl~~w~~p~--------~t 714 (773)
..++. ....+.-..--.++...+..+|++|++++|.+||+-|+|+.+-|| +.
T Consensus 242 ~~pd~~~v~~~~adak~~a~g~~~~~~~DkTk~Pm~~~v~~~~~p~mh~l~di~Dt~ERfaNaLSPTpPFp~~~~RlRLa 321 (642)
T PF11696_consen 242 SEPDPTDVATKAADAKDKAAGEKPKPSHDKTKQPMKEAVWKKMRPIMHMLGDITDTWERFANALSPTPPFPRHTPRLRLA 321 (642)
T ss_pred CCCChhhhhHhhhhhhhhccCCCCCCccchhhchHHHHHHHhhhhHHHHHhhHHHHHHHHhhccCCCCCCCCccHHHHHH
Confidence 00000 000001011122355678999999999999999999999999998 45
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhhhhhhccCCccC-------CCCCCc-----h-hhhhhcCCCCccC
Q 004100 715 ALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFR-------HKLPSV-----P-LNFFRRLPARTDC 771 (773)
Q Consensus 715 ~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~~~~P~~r-------~~~~~~-----~-~~~~~r~ps~~~~ 771 (773)
..++.+++++.++..++-.|.+.|++|+.||+.|-++ +++|+- + .-.|+.||+|+++
T Consensus 322 ~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~FFGdPiI~r~~~~Lnr~~P~W~k~leLrntlLkGVPTNAQL 391 (642)
T PF11696_consen 322 AILAPLLLASLFVSSYMFVKGTTFGFGFGFFGDPIITRGIDYLNRKYPNWQKLLELRNTLLKGVPTNAQL 391 (642)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCchHHH
Confidence 5667777777788888899999999999999999875 344442 1 2347889988764
No 29
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.79 E-value=4.8e-19 Score=160.86 Aligned_cols=94 Identities=40% Similarity=0.604 Sum_probs=89.0
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CC
Q 004100 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KD 113 (773)
Q Consensus 35 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d 113 (773)
...|.|+|+|++|.||..+|..+++||||.+++++++.+|+++++++||+|||.|.|.+.++ ...|.++|||+|.+ +|
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSSD 81 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCcc
Confidence 45789999999999999999879999999999999999999999999999999999999986 67899999999999 99
Q ss_pred eeeEEEEEEcCccCCC
Q 004100 114 DFMGRVLFDLNEIPKR 129 (773)
Q Consensus 114 ~~lG~~~i~l~~l~~~ 129 (773)
|+||.++|+|..+...
T Consensus 82 D~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEA 97 (168)
T ss_pred cccceeeeccHHHHHH
Confidence 9999999999999865
No 30
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.79 E-value=2.1e-18 Score=158.98 Aligned_cols=119 Identities=28% Similarity=0.470 Sum_probs=102.1
Q ss_pred cCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC-CceEEEEEEeCCC
Q 004100 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCH 436 (773)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~ 436 (773)
...+|.|+|+|++|+||+.. +..|.+||||++.++++.++|++++++.||.|||.|.|.+.++ ...|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~---d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPC---NSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 56779999999999999987 4558899999999999999999999999999999999999875 5789999999998
Q ss_pred CCCCCCCCCCCCCccEEEEEecCcccc-----CCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004100 437 LHGGDKAGGARDSRIGKVRIRLSTLET-----DRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 437 ~~~~~~~~~~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
++ +|++||++.++++++.. ...+..|.++. + +..|+|+|++.|
T Consensus 88 ~~--------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~-~~~g~i~l~~~~ 135 (136)
T cd08375 88 FS--------PDDFLGRTEIRVADILKETKESKGPITKRLLLH-----E-VPTGEVVVKLDL 135 (136)
T ss_pred CC--------CCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----c-ccceeEEEEEEe
Confidence 75 78999999999999865 34455566652 2 345999999987
No 31
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.79 E-value=2.4e-18 Score=156.90 Aligned_cols=119 Identities=25% Similarity=0.473 Sum_probs=101.2
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCee-eeeeeccCCCCCccccEEEEEEeCCC-ceEEEEEEeCCCCCC
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPC-TVITIGVFDNCHLHG 439 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~-~~l~v~v~d~~~~~~ 439 (773)
..|+|.|++|+||+.. +.+||||++.+++.. .||++ +++.||.|||.|.|++..+. ..++|.|||++..+
T Consensus 4 ~~L~V~Vi~A~~L~~~------~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~- 75 (126)
T cd08400 4 RSLQLNVLEAHKLPVK------HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS- 75 (126)
T ss_pred eEEEEEEEEeeCCCCC------CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC-
Confidence 5799999999999853 468999999998854 68887 56899999999999876653 68999999998876
Q ss_pred CCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEEee
Q 004100 440 GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (773)
Q Consensus 440 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~ 495 (773)
+|++||++.|+|.++..+.....||+|......+.+..|+|+|+++|..
T Consensus 76 -------~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 -------KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred -------CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 8999999999999999998889999998754434456799999999954
No 32
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.78 E-value=1.7e-18 Score=156.61 Aligned_cols=116 Identities=26% Similarity=0.493 Sum_probs=100.3
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccC-CCCCccccEEEEEEeCC-CceEEEEEEeCCCCCC
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIID-SPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHG 439 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~ 439 (773)
|.|+|.|++|+||+.. +..+.+||||++.+++...+|+++.+ ++||.|||.|.|.+..+ ...|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNK---RKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCC---CcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC--
Confidence 6899999999999987 45588999999999999999999865 79999999999999874 67899999998764
Q ss_pred CCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004100 440 GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 440 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
+|++||++.++++++..+.....||+|.. +| +..|+|+|+++|
T Consensus 76 -------~~~~iG~~~~~l~~~~~~~~~~~w~~L~~---~~-~~~G~i~l~l~f 118 (118)
T cd08681 76 -------KPDLIGDTEVDLSPALKEGEFDDWYELTL---KG-RYAGEVYLELTF 118 (118)
T ss_pred -------CCcceEEEEEecHHHhhcCCCCCcEEecc---CC-cEeeEEEEEEEC
Confidence 37899999999999877767789999964 23 456999999875
No 33
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.77 E-value=3.6e-18 Score=157.00 Aligned_cols=121 Identities=30% Similarity=0.456 Sum_probs=105.2
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCe
Q 004100 38 QYLYVRVVKAKDLPPKDV--TGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDD 114 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~--~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~ 114 (773)
|.|+|+|++|+||+..+. .+.+||||++.+++++++|++++++.||.|||+|.|.+.+.....|.|+|||.+.. +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 689999999999999887 78999999999999999999999999999999999999876678999999999988 899
Q ss_pred eeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC---CceeeEEEEEEE
Q 004100 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG---DKVRGELMLAVW 160 (773)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~---~~~~G~i~l~~~ 160 (773)
+||++.+++.++..+.. .....+||+|.+... ....|+|++++.
T Consensus 81 ~lG~~~i~l~~~~~~~~--~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 81 YLGEFDIALEEVFADGK--TGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred cceEEEEEHHHhhcccc--cCccceeEEccCcccCccccccceEEEEEE
Confidence 99999999999985321 234579999998742 236899999874
No 34
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.77 E-value=1.9e-18 Score=151.71 Aligned_cols=108 Identities=19% Similarity=0.352 Sum_probs=89.3
Q ss_pred ceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeeccCCCCCCeeecEEEEEec--CCCCc
Q 004100 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN----YKGTTRHFEKKTNPEWNQVFAFSKD--RIQSS 99 (773)
Q Consensus 26 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~----~~~~T~~~~~~~nP~WnE~f~f~v~--~~~~~ 99 (773)
.+++.|+ +..+.|.|+|++|+||+ . .|.+||||++.+.. .+++|++.++|+||+|||+|.|.+. ++...
T Consensus 4 ~fsL~Y~--~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~ 78 (118)
T cd08677 4 HYSLSYD--KQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDG 78 (118)
T ss_pred EEEEEEc--CcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCc
Confidence 3455555 66789999999999999 3 36699999999964 4779999999999999999999984 46678
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEe
Q 004100 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (773)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (773)
.|.|.|||+|++ ++++||++.+++.++.... ...+|-+|
T Consensus 79 tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~-----~~~~W~~~ 118 (118)
T cd08677 79 TLTLTLRCCDRFSRHSTLGELRLKLADVSMML-----GAAQWVDL 118 (118)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEccccccCCc-----cccchhcC
Confidence 899999999999 9999999999999875442 23467553
No 35
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.77 E-value=6.3e-18 Score=152.35 Aligned_cols=113 Identities=36% Similarity=0.588 Sum_probs=100.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeeeE
Q 004100 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMG 117 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG 117 (773)
+|+|+|++|+||+..+..+.+||||++++++++.+|++++++.||.|||+|.|.+.+.....|.|+|||++.. ++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 4789999999999998889999999999999999999999999999999999999776678999999999988 899999
Q ss_pred EEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEE
Q 004100 118 RVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (773)
Q Consensus 118 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (773)
++.++|.++..+. ....|++|.+. .|+|++.+.+
T Consensus 81 ~~~~~l~~l~~~~-----~~~~w~~L~~~-----~G~~~~~~~~ 114 (116)
T cd08376 81 RCEIDLSALPREQ-----THSLELELEDG-----EGSLLLLLTL 114 (116)
T ss_pred EEEEeHHHCCCCC-----ceEEEEEccCC-----CcEEEEEEEe
Confidence 9999999988653 35789999864 3888887755
No 36
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.77 E-value=5.8e-18 Score=152.58 Aligned_cols=113 Identities=25% Similarity=0.469 Sum_probs=101.2
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCC
Q 004100 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~~~ 441 (773)
+++|.|++|+||+.. +..+.+||||++.++++..+|++++++.||.|||.|.|.+.++ ...|.|+|||++.++
T Consensus 1 ~~~V~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~--- 74 (116)
T cd08376 1 VVTIVLVEGKNLPPM---DDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK--- 74 (116)
T ss_pred CEEEEEEEEECCCCC---CCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC---
Confidence 478999999999987 4457899999999999999999999999999999999999876 789999999998875
Q ss_pred CCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004100 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
+|++||++.++++++..++....|++|.. ..|++++++.+
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~ 114 (116)
T cd08376 75 -----KDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTL 114 (116)
T ss_pred -----CCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEe
Confidence 79999999999999999888999999953 14899888776
No 37
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=6.5e-18 Score=153.12 Aligned_cols=118 Identities=26% Similarity=0.462 Sum_probs=102.8
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 441 (773)
|.|+|.|++|+||+.+ +..+.+||||++.+++...+|++++++.||.|||+|.|++.+....+.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~--- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAA---DIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK--- 74 (119)
T ss_pred CEEEEEEEeeeCCCCC---CCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence 6899999999999987 4457899999999999999999999999999999999999877889999999998765
Q ss_pred CCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004100 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
++++||++.+++.++..+. ..||+|......+ +..|+|.++++|
T Consensus 75 -----~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~ 118 (119)
T cd08377 75 -----KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDV 118 (119)
T ss_pred -----CCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEe
Confidence 7899999999999998765 5799997643333 346999999887
No 38
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.77 E-value=4.5e-18 Score=150.71 Aligned_cols=102 Identities=29% Similarity=0.430 Sum_probs=89.2
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeee
Q 004100 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFM 116 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~l 116 (773)
|+.|.|+|++|++|+..+ ..||||++++++++.+|++.++ .||.|||+|.|.+.+.. ..|.|+|||++..+|++|
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~~DD~l 75 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLIWDTLV 75 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCcCCCce
Confidence 578999999999997544 5699999999999999999987 59999999999998754 449999999997799999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeC
Q 004100 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (773)
|++.|+|.++..+. .+..++||+|...
T Consensus 76 G~v~i~L~~v~~~~---~~~~~~Wy~L~~~ 102 (127)
T cd08394 76 GTVWIPLSTIRQSN---EEGPGEWLTLDSE 102 (127)
T ss_pred EEEEEEhHHcccCC---CCCCCccEecChH
Confidence 99999999998763 4567899999854
No 39
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.77 E-value=6e-18 Score=154.61 Aligned_cols=120 Identities=20% Similarity=0.353 Sum_probs=101.9
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECC--eeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 004100 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ--KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~--~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 441 (773)
|.|+|++|+||+. ..|.+||||++.+++ +..||+++++++||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--- 72 (126)
T ss_pred CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence 5789999999985 347899999999974 568999999999999999999999766788999999998865
Q ss_pred CCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEEeec
Q 004100 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~~ 496 (773)
+|++||++.++++++..+.....|++|......+.+..|+|+++++|...
T Consensus 73 -----~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 73 -----DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred -----CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 79999999999999988877789999975432233457999999999544
No 40
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.77 E-value=4.5e-18 Score=154.81 Aligned_cols=118 Identities=22% Similarity=0.355 Sum_probs=99.3
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC-
Q 004100 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVT-GSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR- 95 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~- 95 (773)
|..++++.|+... +.|.|+|++|+||++.+.. |.+||||++.+.+ .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~Y~~~~--~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~ 79 (128)
T cd08392 2 GEIEFALHYNFRT--SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEAD 79 (128)
T ss_pred cEEEEEEEEeCCC--CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHH
Confidence 4567888888544 6999999999999998864 8999999999963 36799999999999999999999843
Q ss_pred -CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004100 96 -IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 96 -~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
+....|.|.|||.+.. ++++||++.|+|.++..... .+...+||+|.
T Consensus 80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~--~~~~~~W~~l~ 128 (128)
T cd08392 80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDT--DSQRFLWYPLN 128 (128)
T ss_pred HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCC--CccccceEECc
Confidence 4467999999999988 99999999999999976532 23568999973
No 41
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.77 E-value=5.4e-18 Score=155.25 Aligned_cols=121 Identities=32% Similarity=0.484 Sum_probs=101.8
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC----CceEEEEEEeCCCCC
Q 004100 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP----CTVITIGVFDNCHLH 438 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v~v~d~~~~~ 438 (773)
.|.|+|++|+||+.. +..|.+||||++.++++..||++++++.||.|||.|.|.+.++ ...|.|.|||++.++
T Consensus 1 ~L~V~vi~A~~L~~~---d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPK---DGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 478999999999987 4557899999999999999999999999999999999999864 358999999988752
Q ss_pred CCCCCCCCCCCccEEEEEecCccc-cCCeEEeeEEeEeecCCCcccccEEEEEEEEe
Q 004100 439 GGDKAGGARDSRIGKVRIRLSTLE-TDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (773)
Q Consensus 439 ~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~ 494 (773)
.+|++||++.++++++. .+.....||+|......+ +..|+|+|++.++
T Consensus 78 -------~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~~ 126 (127)
T cd04022 78 -------RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFS-RVRGEIGLKVYIT 126 (127)
T ss_pred -------CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCC-CccEEEEEEEEEc
Confidence 15889999999999987 566778999997643332 3469999998774
No 42
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.76 E-value=6.9e-18 Score=152.73 Aligned_cols=100 Identities=22% Similarity=0.354 Sum_probs=89.1
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeC----CCceEEEEEE
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGVF 432 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v~ 432 (773)
+.|.|.|++|+||+++ + .+.+||||++.+.+ .+.||++++++.||.|||+|.|++.. ....|.|+||
T Consensus 13 ~~L~V~Vi~A~~L~~~---~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~ 88 (122)
T cd08381 13 GTLFVMVMHAKNLPLL---D-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVW 88 (122)
T ss_pred CEEEEEEEEeeCCCCC---C-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEE
Confidence 7899999999999987 4 57899999999963 46899999999999999999999832 3679999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEe
Q 004100 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (773)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 473 (773)
|+|.++ ++++||++.|+|+++..++....||+|
T Consensus 89 d~d~~~--------~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 89 SHDSLV--------ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred eCCCCc--------CCcEEEEEEEeccccccCCCccceEEC
Confidence 999876 789999999999999988888899997
No 43
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.76 E-value=4.8e-18 Score=154.70 Aligned_cols=115 Identities=27% Similarity=0.477 Sum_probs=97.3
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEec--
Q 004100 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVT-GSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD-- 94 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~-- 94 (773)
|...+++.|+ +..+.|.|+|++|+||++.+.. |.+||||++++.+ .+++|++++++.||+|||+|.|.+.
T Consensus 2 G~i~~sl~y~--~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 2 GSVQFALDYD--PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred cEEEEEEEEE--CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHH
Confidence 4456777776 4457899999999999999875 8999999999953 3579999999999999999999985
Q ss_pred CCCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004100 95 RIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 95 ~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
++....|.|+|||.+.. ++++||++.++|.++..+. ....||+|+
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L~ 125 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSN-----TQPTWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCC-----CCcceEECc
Confidence 35567899999999988 8999999999999997542 356899874
No 44
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.76 E-value=7e-18 Score=155.06 Aligned_cols=123 Identities=24% Similarity=0.428 Sum_probs=102.9
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCCCCC
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCHLHGG 440 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~~~~~ 440 (773)
|.|+|.|++|+||+..+.. +.+.+||||++.+++...+|++++++.||.|||+|.|++.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~-~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~-- 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRS-GKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA-- 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCC-CCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC--
Confidence 6899999999999987331 15789999999999999999999999999999999999997 4789999999998865
Q ss_pred CCCCCCCCCccEEEEEecCccc---cCCeEEeeEEeEeecCC-CcccccEEEEEEEE
Q 004100 441 DKAGGARDSRIGKVRIRLSTLE---TDRVYTHSYPLLVLYPN-GVKKMGEIHLAVRF 493 (773)
Q Consensus 441 ~~~~~~~d~~lG~~~i~l~~l~---~~~~~~~~~~L~~~~~~-g~~~~G~v~l~~~~ 493 (773)
++++||++.+++.++. .......||+|...... .....|+|+|++.|
T Consensus 78 ------~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 ------GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred ------CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 7899999999999986 33446789999765322 12357999998864
No 45
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.76 E-value=7.7e-18 Score=155.37 Aligned_cols=116 Identities=26% Similarity=0.294 Sum_probs=98.1
Q ss_pred ccCcceeeeecccCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC
Q 004100 22 ITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKD-VTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR 95 (773)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~ 95 (773)
.|..++++.|+ .+.|.|+|++|+||++.+ ..|.+||||++++.+ .+.||++++++.||+|||+|.|.+.
T Consensus 17 ~G~l~lsl~y~----~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~- 91 (146)
T cd04028 17 MGDIQLGLYDK----KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS- 91 (146)
T ss_pred cceEEEEEEeC----CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-
Confidence 45667887773 478999999999998864 567899999999954 3679999999999999999999998
Q ss_pred CCCceEEEEEE-eCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004100 96 IQSSVLEVTVK-DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 96 ~~~~~l~i~V~-d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
+....|.|+|| |.+.+ ++++||++.|+|.++..+. ....||+|.+..
T Consensus 92 l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~Wy~L~~~~ 140 (146)
T cd04028 92 PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSN-----LVIGWYKLFPTS 140 (146)
T ss_pred CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCC-----CceeEEecCCcc
Confidence 66889999999 57777 8999999999999986543 257899998764
No 46
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.76 E-value=5.2e-18 Score=149.66 Aligned_cols=103 Identities=28% Similarity=0.452 Sum_probs=92.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeeeEE
Q 004100 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGR 118 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~ 118 (773)
.|.|+|++|+||+..+..+.+||||++++++++++|+++.++.||.|||+|.|.+.++..+.|.|+|+|.+. +++||+
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~ 78 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGS 78 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEE
Confidence 489999999999998888999999999999999999999999999999999999987667899999999886 889999
Q ss_pred EEEEcCccCCCCCCCCCCcCeEEEeeeC
Q 004100 119 VLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 119 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (773)
+.++|.++..+. ....++||+|.+.
T Consensus 79 ~~i~l~~l~~~~---~~~~~~w~~L~~~ 103 (105)
T cd04050 79 LTLPLSELLKEP---DLTLDQPFPLDNS 103 (105)
T ss_pred EEEEHHHhhccc---cceeeeeEecCCC
Confidence 999999998653 3346899999864
No 47
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.75 E-value=1.8e-17 Score=152.97 Aligned_cols=104 Identities=18% Similarity=0.296 Sum_probs=90.3
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--C---eeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEE-eCC
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVF-DNC 435 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~-d~~ 435 (773)
|.|.|.|++|+||++.+ +..|.+||||++.+. + .+.||+++++++||+|||+|.|.+......|.|+|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCccc--CCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 78999999999998753 235789999999993 3 267999999999999999999999866889999999 566
Q ss_pred CCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004100 436 HLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
.++ ++++||.+.|+|+++..+.....||+|..
T Consensus 107 ~~~--------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~ 138 (146)
T cd04028 107 RMD--------KKVFMGVAQILLDDLDLSNLVIGWYKLFP 138 (146)
T ss_pred CCC--------CCceEEEEEEEcccccCCCCceeEEecCC
Confidence 554 78999999999999988888899999965
No 48
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.75 E-value=2.7e-17 Score=149.08 Aligned_cols=116 Identities=35% Similarity=0.647 Sum_probs=102.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004100 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (773)
|.|.|+|++|+||+..+..+.+||||++.+++..++|++++++.||.|||+|.|.+.+. ...+.|+|||++.. ++++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCcee
Confidence 67999999999999998888999999999999889999999999999999999998764 57899999999987 99999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC-CceeeEEEEEEEE
Q 004100 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG-DKVRGELMLAVWM 161 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~~~~ 161 (773)
|++.+++.++..+ ..+||+|.+..+ .+..|+|.+++.+
T Consensus 80 G~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 80 GKVAIPLLSIKNG-------ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eEEEEEHHHCCCC-------CceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999998643 358999987653 3468999998754
No 49
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.75 E-value=1.1e-17 Score=146.99 Aligned_cols=102 Identities=17% Similarity=0.214 Sum_probs=86.8
Q ss_pred cCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC----eeeeeeeccCCCCCccccEEEEEEeC---CCceEEEE
Q 004100 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ----KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIG 430 (773)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~----~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~ 430 (773)
.+..+.|.|.|++|+||+ . + |.+||||++.+.. .+.+|+++++|+||+|||+|.|.|.. +...|.|.
T Consensus 10 ~~~~~~L~V~vikA~~L~-~---~--g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~ 83 (118)
T cd08677 10 DKQKAELHVNILEAENIS-V---D--AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLT 83 (118)
T ss_pred cCcCCEEEEEEEEecCCC-C---C--CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEE
Confidence 455689999999999998 2 2 4599999999953 46799999999999999999999874 36789999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEe
Q 004100 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 473 (773)
|||.|.++ ++++||++.++++++..+....+|..|
T Consensus 84 V~d~Drfs--------~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 84 LRCCDRFS--------RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEeCCCCC--------CCceEEEEEEccccccCCccccchhcC
Confidence 99999987 899999999999988666666677653
No 50
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.75 E-value=1.2e-17 Score=151.80 Aligned_cols=117 Identities=28% Similarity=0.508 Sum_probs=101.1
Q ss_pred ceEEEEEEEccCCCCCccCC---CCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCC
Q 004100 362 GVLELGILNAQGLMPMKTKD---GRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCHL 437 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~---~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~~ 437 (773)
|.|+|.|++|+||+..+... ..|.+||||++.++++.++|++++++.||.|||.|.|.+.+ ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 67999999999999875321 14679999999999999999999999999999999999986 478999999999864
Q ss_pred CCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004100 438 HGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 438 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
+|++||++.++++++..+.....||+|.. ...|+|+++++|
T Consensus 81 ---------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~------~~~G~~~~~~~~ 121 (121)
T cd08391 81 ---------KDDFLGRLSIDLGSVEKKGFIDEWLPLED------VKSGRLHLKLEW 121 (121)
T ss_pred ---------CCCcEEEEEEEHHHhcccCccceEEECcC------CCCceEEEEEeC
Confidence 58899999999999988877889999964 245999998875
No 51
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.75 E-value=2.1e-17 Score=152.91 Aligned_cols=122 Identities=32% Similarity=0.530 Sum_probs=103.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC
Q 004100 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-------KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV 111 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~-------~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~ 111 (773)
.|+|+|++|+||+..+..+.+||||++.+.++ +.+|++++++.||.|||+|.|.+... ...|.|+|||.+..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 38999999999999998889999999999764 46899999999999999999998653 56799999999988
Q ss_pred -CCeeeEEEEEEcCccCCCCCCC-CCCcCeEEEeeeCC-CCceeeEEEEEEEE
Q 004100 112 -KDDFMGRVLFDLNEIPKRVPPD-SPLAPQWYRLEDRK-GDKVRGELMLAVWM 161 (773)
Q Consensus 112 -~d~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~-~~~~~G~i~l~~~~ 161 (773)
++++||++.+++.++..+.+.+ .....+||+|+... ..+..|+|++++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 8999999999999999764432 34567999999764 23468999999865
No 52
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.75 E-value=1.1e-17 Score=152.23 Aligned_cols=103 Identities=22% Similarity=0.353 Sum_probs=89.4
Q ss_pred cceEEEEEEEccCCCCCccCCC-CCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeC---CCceEEEEE
Q 004100 361 IGVLELGILNAQGLMPMKTKDG-RGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGV 431 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v 431 (773)
.+.|.|.|++|+||+++ +. .|.+||||++.+.+ ...||+++++++||.|||.|.|++.. ....|.|+|
T Consensus 14 ~~~L~V~vi~a~~L~~~---d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 14 LRELHVHVIQCQDLAAA---DPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred CCEEEEEEEEeCCCCCc---CCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 47999999999999987 44 37899999999842 34799999999999999999999874 256899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004100 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
||++.++ ++++||.+.|+|.++..++....||+|.
T Consensus 91 ~d~~~~~--------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 91 WHRDSLG--------RNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EeCCCCC--------CCcEeEEEEEecCccccCCCCcceEECc
Confidence 9998876 7899999999999998877778999973
No 53
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.75 E-value=1.2e-17 Score=151.75 Aligned_cols=114 Identities=23% Similarity=0.316 Sum_probs=96.2
Q ss_pred CcceeeeecccCceeEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC--
Q 004100 24 GDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDV-TGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR-- 95 (773)
Q Consensus 24 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~-- 95 (773)
...++++|+ +..+.|.|+|++|+||+..+. .+.+||||++++.+ .++||++++++.||+|||+|.|.+..
T Consensus 3 ~i~~sl~y~--~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~ 80 (125)
T cd04029 3 EILFSLSYD--YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQ 80 (125)
T ss_pred EEEEEEEEE--CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHH
Confidence 356777775 666799999999999998765 47899999999953 35789999999999999999999853
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004100 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
+....|.|+|||++.. ++++||++.++|.++..+. ....||+|.
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~-----~~~~w~~l~ 125 (125)
T cd04029 81 LETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDS-----QHEECLPLH 125 (125)
T ss_pred hCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccC-----CcccEEECc
Confidence 4567899999999988 9999999999999998653 367899984
No 54
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.75 E-value=1.8e-17 Score=150.68 Aligned_cols=105 Identities=16% Similarity=0.258 Sum_probs=90.8
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-----CeeeeeeeccCCCCCccccEEEEEEeC---CCceEEEE
Q 004100 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIG 430 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~ 430 (773)
+..+.|.|.|++|+||++.+. ..|.+||||++.+. ....||+++++++||.|||+|.|.+.. ....|.|.
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~--~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDE--AKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred CCCCeEEEEEEEecCCCccCC--CCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 444899999999999987632 25789999999884 235799999999999999999999875 25689999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEe
Q 004100 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 473 (773)
|||++.++ ++++||.+.|++.++......+.||||
T Consensus 90 V~d~~~~~--------~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 90 VWHYDRFG--------RNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEECCCCC--------CCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999876 889999999999999988889999998
No 55
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.74 E-value=4e-17 Score=148.86 Aligned_cols=118 Identities=20% Similarity=0.363 Sum_probs=98.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCe
Q 004100 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDD 114 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~ 114 (773)
...|+|+|++|+||+.. +.+||||+|.+++. ..+|++. ++.||.|||+|.|.+.+.....+.|.|||.+.. +|+
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 34799999999999874 47899999999884 4688874 689999999999987554446799999999988 999
Q ss_pred eeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC--CCceeeEEEEEEEEec
Q 004100 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK--GDKVRGELMLAVWMGT 163 (773)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l~~~~~~ 163 (773)
+||.+.++|.++..+. ....||+|.... +.+..|+|+++++|..
T Consensus 79 ~iG~v~i~l~~l~~~~-----~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 79 EIAEVTVQLSKLQNGQ-----ETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred eEEEEEEEHhHccCCC-----cccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 9999999999987643 357899998865 3456799999998864
No 56
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.74 E-value=3e-17 Score=149.54 Aligned_cols=116 Identities=35% Similarity=0.562 Sum_probs=100.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeeeE
Q 004100 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMG 117 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG 117 (773)
.|+|+|++|++|+..+..+.+||||++++++++.+|++++++.||.|||+|.|.+.......|.|+|||++.. ++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 3899999999999998888999999999999999999999999999999999999766567899999999988 899999
Q ss_pred EEEEEcCccCCCCCCCCCCcCeEEEeeeCCC-----CceeeEEEEEE
Q 004100 118 RVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG-----DKVRGELMLAV 159 (773)
Q Consensus 118 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-----~~~~G~i~l~~ 159 (773)
.+.++|.++.... ....||.|..... .+..|.|.+.+
T Consensus 81 ~~~~~l~~l~~~~-----~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAK-----QEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCC-----CCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999997542 2468999986431 23579988875
No 57
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.74 E-value=1.2e-17 Score=149.10 Aligned_cols=101 Identities=31% Similarity=0.456 Sum_probs=86.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeccCCCCCCeeecEEEEEecC---CCCceEEEEEEeCC
Q 004100 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-------YKGTTRHFEKKTNPEWNQVFAFSKDR---IQSSVLEVTVKDKD 109 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-------~~~~T~~~~~~~nP~WnE~f~f~v~~---~~~~~l~i~V~d~~ 109 (773)
|+|+|++|+||+..+ .|.+||||+|.+-+ ++++|+++.++.||+|||+|.|.+.. +....|.|.|||++
T Consensus 2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 899999999999887 58999999999832 35689999999999999999999853 34567999999998
Q ss_pred CC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeC
Q 004100 110 FV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 110 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (773)
.. ++++||++.+++.++..+. ....|++|...
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~-----~~~~w~~L~~~ 113 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAG-----SCACWLPLGRR 113 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCC-----cEEEEEECcCc
Confidence 77 7999999999999998653 35689999765
No 58
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.74 E-value=4.2e-17 Score=150.86 Aligned_cols=122 Identities=27% Similarity=0.454 Sum_probs=100.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCC---------CCceEEEEEEeC
Q 004100 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI---------QSSVLEVTVKDK 108 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~---------~~~~l~i~V~d~ 108 (773)
++|+|+|++|++|+..|..|.+||||++.+++++++|++++++.||.|||+|.|.+..+ ....+.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 47999999999999999999999999999999999999999999999999999975322 125799999999
Q ss_pred CCC-CCeeeEEEEE-EcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEec
Q 004100 109 DFV-KDDFMGRVLF-DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 109 ~~~-~d~~lG~~~i-~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
+.. +|++||++.+ ++..+... ......++|++|.... ...|+|++++.+..
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~--~~~~~~~~W~~L~~~~--~~~Geil~~~~~~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLE--EDFPPKLQWFPIYKGG--QSAGELLAAFELIE 133 (135)
T ss_pred cCCCCCccceEEEeeeeeecccC--CCCCCCceEEEeecCC--CchhheeEEeEEEE
Confidence 988 8999999997 44444321 1245678999998543 35799999987753
No 59
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.74 E-value=2.5e-17 Score=148.99 Aligned_cols=113 Identities=32% Similarity=0.523 Sum_probs=98.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeee
Q 004100 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFM 116 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~l 116 (773)
|.|+|++|++|+..+..+.+||||++.+++ ++++|++++++.||+|||+|.|.+.......|.|+|||.+..+|++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i 81 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL 81 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence 789999999999988888999999999964 67899999999999999999999876556789999999988789999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEE
Q 004100 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (773)
|++.+++.++..+. ....|++|..+. .|+|++.+.+
T Consensus 82 G~~~~~l~~l~~g~-----~~~~~~~L~~~~----~g~l~~~~~~ 117 (119)
T cd04036 82 GTVLFDVSKLKLGE-----KVRVTFSLNPQG----KEELEVEFLL 117 (119)
T ss_pred EEEEEEHHHCCCCC-----cEEEEEECCCCC----CceEEEEEEe
Confidence 99999999998653 367899998652 5888887754
No 60
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.74 E-value=3.6e-17 Score=147.81 Aligned_cols=115 Identities=24% Similarity=0.418 Sum_probs=97.7
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004100 40 LYVRVVKAKDLPPKD-VTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (773)
Q Consensus 40 L~V~v~~a~~L~~~d-~~~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (773)
|.|+|++|+||+..+ ..|.+||||++.++++ .++|+++++|.||.|||+|.|.+.+. ...|.|.|||.+.+ +|++|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceE
Confidence 689999999999874 4578999999999875 68999999999999999999999753 47899999999998 99999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeCC-CCceeeEEEEEEE
Q 004100 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELMLAVW 160 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~~~ 160 (773)
|.+.++++++..+. ....||+|.... ..+..|+|++++.
T Consensus 81 G~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 81 GKVAIKKEDLHKYY-----GKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEEHHHccCCC-----CcEeeEEEEccCCCCcccEEEEEEEE
Confidence 99999999998643 357899998753 2235799999864
No 61
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=2.6e-17 Score=152.25 Aligned_cols=119 Identities=27% Similarity=0.413 Sum_probs=100.2
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-------eeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCC
Q 004100 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-------WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNC 435 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-------~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~ 435 (773)
.|+|+|++|+||+.. +..|.+||||++.+++. ..+|++++++.||.|||+|.|.+......|.|+|||++
T Consensus 1 ~L~v~Vi~a~~L~~~---d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~ 77 (133)
T cd04033 1 ILRVKVLAGIDLAKK---DIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDEN 77 (133)
T ss_pred CEEEEEEEeECCCcc---cCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECC
Confidence 378999999999877 45578999999999764 47999999999999999999999776778999999999
Q ss_pred CCCCCCCCCCCCCCccEEEEEecCccccCCe------EEeeEEeEeecCCCcccccEEEEEEEE
Q 004100 436 HLHGGDKAGGARDSRIGKVRIRLSTLETDRV------YTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
.++ ++++||++.++++++..+.. ...||+|......| +..|+|++++.|
T Consensus 78 ~~~--------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 78 RLT--------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CCC--------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 875 78999999999999876543 35899997644333 346999999987
No 62
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.74 E-value=1.9e-17 Score=150.76 Aligned_cols=118 Identities=25% Similarity=0.405 Sum_probs=99.7
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCC
Q 004100 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~~~ 441 (773)
+|+|.|++|++|+.+ +..+.+||||++.+++...+|++++++.||.|||+|.|.+.+. ...|.|+|||++.++
T Consensus 1 ~L~v~vi~a~~L~~~---d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~--- 74 (123)
T cd04025 1 RLRCHVLEARDLAPK---DRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS--- 74 (123)
T ss_pred CEEEEEEEeeCCCCC---CCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC---
Confidence 488999999999887 4457899999999999999999999999999999999999875 578999999998875
Q ss_pred CCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCC---cccccEEEEEE
Q 004100 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNG---VKKMGEIHLAV 491 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g---~~~~G~v~l~~ 491 (773)
++++||.+.++++++..+.....||.|....... .+..|.|++.+
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 75 -----KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred -----CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 7899999999999998776678899997533221 12368887765
No 63
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.74 E-value=1.9e-17 Score=147.74 Aligned_cols=106 Identities=25% Similarity=0.414 Sum_probs=92.7
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCC----CCceEEEEEEeCCC
Q 004100 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI----QSSVLEVTVKDKDF 110 (773)
Q Consensus 35 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~----~~~~l~i~V~d~~~ 110 (773)
++.+.|+|+|++|++|+ .+.+||||++++++++++|++++++.||.|||+|.|.+... ....|.|+|||.+.
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 35678999999999998 47899999999999999999999999999999999997432 35689999999998
Q ss_pred C-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeC
Q 004100 111 V-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 111 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (773)
. ++++||++.++|+++..+. +++...+|++|.++
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~--~~~~~~~w~~L~~~ 111 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQP--DHAFLRKWLLLTDP 111 (111)
T ss_pred cccCCccEEEEECCccccCCC--CCcceEEEEEeeCc
Confidence 8 8999999999999998653 35678999999763
No 64
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.74 E-value=2.8e-17 Score=149.43 Aligned_cols=114 Identities=35% Similarity=0.609 Sum_probs=99.5
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC
Q 004100 38 QYLYVRVVKAKDLPPKDV------TGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV 111 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~------~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~ 111 (773)
|+|+|+|++|+||+..+. .+.+||||+++++++.++|++++++.||.|||+|.|.+.+.....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998774 36899999999999999999999999999999999999766678999999999887
Q ss_pred CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEE
Q 004100 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVW 160 (773)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~ 160 (773)
++++||.+.+++.++..+. ....||+|.+. ..|+|++.+.
T Consensus 81 ~~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~----~~G~~~~~~~ 120 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKKG-----FIDEWLPLEDV----KSGRLHLKLE 120 (121)
T ss_pred CCCcEEEEEEEHHHhcccC-----ccceEEECcCC----CCceEEEEEe
Confidence 8899999999999998542 36799999864 2588888763
No 65
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.74 E-value=6.3e-17 Score=147.74 Aligned_cols=118 Identities=20% Similarity=0.304 Sum_probs=101.5
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeee
Q 004100 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFM 116 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~l 116 (773)
..+|+|+|++|++|...+..|.+||||++.+++++++|++++++.||+|||.|.|.+.+. ...|.|+|||++..+|++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCCce
Confidence 468999999999999998889999999999999999999999999999999999988654 6789999999988889999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeCC---CCceeeEEEEEEEEe
Q 004100 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK---GDKVRGELMLAVWMG 162 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~---~~~~~G~i~l~~~~~ 162 (773)
|.+++++.++.. ...+|++|.... ..+..|+|.+++.+.
T Consensus 81 G~~~~~l~~~~~-------~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 81 GQATLSADPNDS-------QTLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred EEEEEecccCCC-------cCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 999999987542 245889997542 335679999998664
No 66
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.73 E-value=3.5e-17 Score=148.23 Aligned_cols=117 Identities=29% Similarity=0.463 Sum_probs=99.6
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCee-eeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 004100 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~ 442 (773)
|.|.|++|+||+.+ +..|.+||||++.++++. .||+++++++||.|||.|.|.+......|.|+|||++.++
T Consensus 2 l~v~vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~---- 74 (121)
T cd04054 2 LYIRIVEGKNLPAK---DITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS---- 74 (121)
T ss_pred EEEEEEEeeCCcCC---CCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence 78999999999987 445789999999998764 6999999999999999999999877789999999999876
Q ss_pred CCCCCCCccEEEEEecCccccC-CeEEeeEEeEeecCCCcccccEEEEEEE
Q 004100 443 AGGARDSRIGKVRIRLSTLETD-RVYTHSYPLLVLYPNGVKKMGEIHLAVR 492 (773)
Q Consensus 443 ~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g~~~~G~v~l~~~ 492 (773)
+|++||++.+++.++..+ .....|++|...+..+ +..|+|++.++
T Consensus 75 ----~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 75 ----RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred ----CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 899999999999888653 3467899997654333 34699988875
No 67
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.73 E-value=3.2e-17 Score=148.31 Aligned_cols=112 Identities=23% Similarity=0.338 Sum_probs=96.8
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECC---eeeeeeeccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCC
Q 004100 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHG 439 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~ 439 (773)
|.|.|++|+||+.. +..+.+||||++.+++ ...||++++++.||.|||+|.|.+..+ ...|.|+|||+|.+
T Consensus 2 L~V~vi~a~~L~~~---~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-- 76 (119)
T cd04036 2 LTVRVLRATNITKG---DLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-- 76 (119)
T ss_pred eEEEEEEeeCCCcc---CCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC--
Confidence 78999999999976 4457899999999863 568999999999999999999998865 56799999999875
Q ss_pred CCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004100 440 GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 440 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
+|++||++.++++++..+.....|++|.. +..|++++++.+
T Consensus 77 -------~~~~iG~~~~~l~~l~~g~~~~~~~~L~~------~~~g~l~~~~~~ 117 (119)
T cd04036 77 -------MDDHLGTVLFDVSKLKLGEKVRVTFSLNP------QGKEELEVEFLL 117 (119)
T ss_pred -------CCcccEEEEEEHHHCCCCCcEEEEEECCC------CCCceEEEEEEe
Confidence 48899999999999999999999999953 235888888765
No 68
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.73 E-value=2.1e-17 Score=148.92 Aligned_cols=112 Identities=20% Similarity=0.366 Sum_probs=95.4
Q ss_pred ceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeccCCCCCCeeecEEEEEec--CCC
Q 004100 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN------YKGTTRHFEKKTNPEWNQVFAFSKD--RIQ 97 (773)
Q Consensus 26 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~------~~~~T~~~~~~~nP~WnE~f~f~v~--~~~ 97 (773)
.+++.|+ +..+.|.|+|++|+||+..+..+.+||||++.+-+ .+++|++.+++.||+|||+|.|++. ++.
T Consensus 4 ~~sL~Y~--~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 4 QIGLRYD--SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred EEEEEEC--CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 4566666 66679999999999999988888999999999853 3688999999999999999999984 456
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEe
Q 004100 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (773)
...|.|.|||.+.. ++++||.+.|+|.++.... .....||+|
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~----~~~~~Wy~l 124 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSE----EMSTKWYNL 124 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCC----ccccccccC
Confidence 78999999999988 8999999999999996542 236789876
No 69
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.73 E-value=7.3e-17 Score=147.29 Aligned_cols=119 Identities=22% Similarity=0.296 Sum_probs=99.7
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 441 (773)
+.++|+|++|++|... +..|.+||||++.++++.++|++++++.||.|||.|.|.+.++...|.|+|||++.+
T Consensus 3 ~~~~V~v~~A~~L~~~---d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~---- 75 (126)
T cd04046 3 VVTQVHVHSAEGLSKQ---DSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL---- 75 (126)
T ss_pred EEEEEEEEeCcCCCCC---CCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC----
Confidence 6899999999999876 456889999999999999999999999999999999999988888999999999875
Q ss_pred CCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecC-CCcccccEEEEEEEEe
Q 004100 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYP-NGVKKMGEIHLAVRFT 494 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~-~g~~~~G~v~l~~~~~ 494 (773)
+|++||++.+++..+..+. ..+|+|..... ...+..|+|.+++.+.
T Consensus 76 -----~d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 76 -----CDEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred -----CCCceEEEEEecccCCCcC--ceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 4799999999998865433 57889853221 1223469999988763
No 70
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.73 E-value=5.8e-17 Score=153.32 Aligned_cols=119 Identities=27% Similarity=0.458 Sum_probs=101.1
Q ss_pred eeEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCee-eeeeccCCCCCCee
Q 004100 37 MQYLYVRVVKAKDLPPKD------------------------------VTGSCDPYVEVKMGNYK-GTTRHFEKKTNPEW 85 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d------------------------------~~~~~dpyv~v~~~~~~-~~T~~~~~~~nP~W 85 (773)
.|.|.|+|++|++|+.+| ..|++||||+|.+++.+ .+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 378999999999999887 34678999999999854 69999999999999
Q ss_pred ecEEEEEecCCCCceEEEEEEeCCCCCCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCC--ceeeEEEEEEEE
Q 004100 86 NQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD--KVRGELMLAVWM 161 (773)
Q Consensus 86 nE~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~G~i~l~~~~ 161 (773)
||+|.|.+... .+.|.|.|||.+.+++++||++.+++.++..+. ...+||+|.+..+. +..|.|++++.|
T Consensus 86 nE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~-----~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGE-----PVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCC-----CcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999998654 467999999999887899999999999998542 36799999886543 345899999876
No 71
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.73 E-value=5.3e-17 Score=148.38 Aligned_cols=117 Identities=26% Similarity=0.426 Sum_probs=100.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004100 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN--YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~--~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (773)
|.|+|++|+||+. ..+.+||||++.+++ ++++|+++.++.||+|||+|.|.+.. ....|.|+|||.+.. +|++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence 6799999999987 578999999999984 67899999999999999999999864 367899999999998 89999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC--CceeeEEEEEEEEecc
Q 004100 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG--DKVRGELMLAVWMGTQ 164 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~~~~~~~ 164 (773)
|++.+++.++..+.. ...|++|....+ ....|+|.+.+.|...
T Consensus 78 G~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 78 GLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 999999999986532 468999987642 4568999999988653
No 72
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.73 E-value=3.9e-17 Score=149.02 Aligned_cols=115 Identities=31% Similarity=0.470 Sum_probs=97.6
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEecC--CC
Q 004100 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDR--IQ 97 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v~~--~~ 97 (773)
|...+++.|+. ..+.|.|+|++|+||+..+..+.+||||++.+.+ .+++|++++++.||+|||+|.|.+.. ..
T Consensus 3 G~l~~~l~y~~--~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~ 80 (124)
T cd08385 3 GKLQFSLDYDF--QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELG 80 (124)
T ss_pred cEEEEEEEEeC--CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhC
Confidence 45567777774 4468999999999999998888999999999864 46799999999999999999999853 34
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004100 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
...|.|+|||.+.+ ++++||++.++|.++..+ ....+|++|.
T Consensus 81 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~-----~~~~~W~~l~ 123 (124)
T cd08385 81 NKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLG-----HVTEEWRDLE 123 (124)
T ss_pred CCEEEEEEEeCCCCCCCceeEEEEEecCcccCC-----CCcceEEEcc
Confidence 57899999999988 899999999999998764 2467999986
No 73
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.73 E-value=4e-17 Score=148.93 Aligned_cols=113 Identities=27% Similarity=0.531 Sum_probs=97.0
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEecC--CCCc
Q 004100 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDR--IQSS 99 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v~~--~~~~ 99 (773)
..+++.|+ +..+.|.|+|++|+||+..+..+.+||||++.+.. .+++|++++++.||+|||+|.|.+.. +...
T Consensus 5 l~~sl~y~--~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~ 82 (124)
T cd08387 5 LHFSLEYD--KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKR 82 (124)
T ss_pred EEEEEEEC--CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCC
Confidence 45666665 66789999999999999999889999999999942 56899999999999999999999853 3456
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004100 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
.|.|+|||++.. ++++||++.++|.++..+. ....||+|+
T Consensus 83 ~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08387 83 TLEVLLYDFDQFSRDECIGVVELPLAEVDLSE-----KLDLWRKIQ 123 (124)
T ss_pred EEEEEEEECCCCCCCceeEEEEEecccccCCC-----CcceEEECc
Confidence 899999999988 8999999999999998653 357899986
No 74
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.73 E-value=4.3e-17 Score=148.88 Aligned_cols=117 Identities=25% Similarity=0.343 Sum_probs=96.2
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEE-ec--C
Q 004100 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVT-GSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFS-KD--R 95 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~-v~--~ 95 (773)
|..++++.|+.. .+.|.|+|++|+||+..+.. +.+||||++.+.+ ++.||++++++.||+|||+|.|. +. +
T Consensus 3 G~l~~~l~y~~~--~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~ 80 (128)
T cd08388 3 GTLFFSLRYNSE--KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQ 80 (128)
T ss_pred eEEEEEEEEECC--CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHH
Confidence 556777777754 46999999999999998875 8999999999963 46799999999999999999993 43 3
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004100 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
.....|.|+|||++.. ++++||++.++|.++..... .....|++|+
T Consensus 81 ~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~---~~~~~~~~~~ 127 (128)
T cd08388 81 LQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNE---GELLVSREIQ 127 (128)
T ss_pred hCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCC---ceEEEEEecc
Confidence 3456799999999988 99999999999999976521 2367888875
No 75
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.72 E-value=5.4e-17 Score=148.07 Aligned_cols=105 Identities=21% Similarity=0.394 Sum_probs=91.9
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC---CeeeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEE
Q 004100 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVF 432 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~ 432 (773)
+..|.|.|.|++|+||+.. +..|.+||||++.++ ....||++++++.||.|||.|.|.+... ...|.|+||
T Consensus 13 ~~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~ 89 (124)
T cd08387 13 KDMGILNVKLIQARNLQPR---DFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLY 89 (124)
T ss_pred CCCCEEEEEEEEeeCCCCC---CCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEE
Confidence 3458999999999999987 455789999999983 3468999999999999999999998753 568999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004100 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
|++.++ ++++||.+.|+++++..+...+.||+|.
T Consensus 90 d~~~~~--------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 90 DFDQFS--------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred ECCCCC--------CCceeEEEEEecccccCCCCcceEEECc
Confidence 998875 7899999999999998888889999984
No 76
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.72 E-value=8.4e-17 Score=145.76 Aligned_cols=116 Identities=32% Similarity=0.514 Sum_probs=98.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeeeE
Q 004100 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMG 117 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG 117 (773)
|.|+|++|++|+..+..|.+||||++.+++. ..+|++++++.||.|||.|.|.+... ...|.|+|||.+.. +|++||
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCEEE
Confidence 7899999999999998999999999999885 47999999999999999999998653 47899999999988 899999
Q ss_pred EEEEEcCccCCCCCCCCCCcCeEEEeeeCC-CCceeeEEEEEEE
Q 004100 118 RVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELMLAVW 160 (773)
Q Consensus 118 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~~~ 160 (773)
++.+++.++... ......|++|.... +....|+|++.+.
T Consensus 81 ~~~~~~~~~~~~----~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 81 KVSLTREVISAH----PRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEcHHHhccC----CCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 999999888643 12357899998754 3346799988764
No 77
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.72 E-value=3.9e-17 Score=151.75 Aligned_cols=102 Identities=28% Similarity=0.482 Sum_probs=87.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEec---------------CCCCc
Q 004100 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD---------------RIQSS 99 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~---------------~~~~~ 99 (773)
|.|+|++|+||+. ..|.+||||+|.+.+ ++++|++++++.||+|||+|.|.+. +....
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 8999999999998 468999999999976 5789999999999999999999984 22346
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004100 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
.|.|.|||++.. +|++||++.|++.++..+. .....||+|..+.
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~----~~~~~W~~L~~~~ 124 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQA----GSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccC----CcCcceeecCCcc
Confidence 799999999988 9999999999999988651 2357899998765
No 78
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.72 E-value=8e-17 Score=146.62 Aligned_cols=104 Identities=20% Similarity=0.228 Sum_probs=88.1
Q ss_pred CccceEEEEEEEccCCCCCccCCC-CCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCC---CceEEE
Q 004100 359 SSIGVLELGILNAQGLMPMKTKDG-RGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITI 429 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v 429 (773)
+..+.|.|.|++|+||+++ +. .|.+||||++.+.+ .+.||+++++++||+|||+|.|++... ...|.|
T Consensus 12 ~~~~~L~V~V~~a~nL~~~---d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v 88 (128)
T cd08392 12 FRTSCLEITIKACRNLAYG---DEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQV 88 (128)
T ss_pred CCCCEEEEEEEecCCCCcc---CCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEE
Confidence 3347999999999999987 44 38899999999842 367999999999999999999998653 569999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecCccccC---CeEEeeEEe
Q 004100 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD---RVYTHSYPL 473 (773)
Q Consensus 430 ~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~---~~~~~~~~L 473 (773)
.|||.+.++ ++++||.+.|+|+++... .....||+|
T Consensus 89 ~V~~~~~~~--------~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 89 SVWHSRTLK--------RRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEEeCCCCc--------CcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 999998765 789999999999998543 467789997
No 79
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.72 E-value=8.6e-17 Score=145.33 Aligned_cols=118 Identities=27% Similarity=0.444 Sum_probs=100.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCcee
Q 004100 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVL 280 (773)
Q Consensus 201 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d~~i 280 (773)
+|+|+|++|++|+.+ .+||||++.+++++.+|+++++ +.||.|||+|.|.+..+....|.|+|||++.. ++++|
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~-t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~l 74 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIER-TSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFL 74 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCC-CCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCcee
Confidence 388999999999887 5899999999999999999877 99999999999998776778999999999876 78999
Q ss_pred EEEEEeccccccccC-CCCCCceEEEcccCcccccccccCCceeeEEEEEEEE
Q 004100 281 GKCMIPLQYVDKRLD-HKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICL 332 (773)
Q Consensus 281 G~~~i~L~~l~~~~~-~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~ 332 (773)
|++.++++++..+.. +.....+||+|.+... .+..|+|++.+.+
T Consensus 75 G~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~--------~~~~G~i~l~~~~ 119 (121)
T cd08378 75 GGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG--------GRVGGELMLAVWF 119 (121)
T ss_pred eeEEEEhHhCcCCCCCCCCCCcceEEccCCCC--------CccceEEEEEEEe
Confidence 999999999865422 2344679999988621 3568999998875
No 80
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.71 E-value=6.3e-17 Score=144.50 Aligned_cols=100 Identities=18% Similarity=0.273 Sum_probs=86.3
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-C----C--eeeeeeeccCCCCCccccEEEEEEeCC----CceEEEEE
Q 004100 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-G----Q--KWVRTRTIIDSPTPKWNEQYTWEVFDP----CTVITIGV 431 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-~----~--~~~~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v~v 431 (773)
.|+|.|++|+||+.. + .|.+||||+|.+ | . ++.+|+++.+++||+|||.|.|.+... ...|.|.|
T Consensus 1 kL~V~Vi~A~~L~~~---d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V 76 (120)
T cd08395 1 KVTVKVVAANDLKWQ---T-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICV 76 (120)
T ss_pred CEEEEEEECcCCCcc---c-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEE
Confidence 488999999999875 3 388999999997 3 2 346899999999999999999999732 45799999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004100 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
||+|..+ +|++||++.++++++..++....|++|.
T Consensus 77 ~D~d~~~--------~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 77 KDYCFAR--------DDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred EEecccC--------CCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 9998654 7899999999999999998889999994
No 81
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.71 E-value=5.7e-17 Score=143.00 Aligned_cols=96 Identities=20% Similarity=0.301 Sum_probs=83.9
Q ss_pred ceEEEEEEEccCCCCCccCC-CCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC--CceEEEEEEeCCCCC
Q 004100 362 GVLELGILNAQGLMPMKTKD-GRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITIGVFDNCHLH 438 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~-~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v~v~d~~~~~ 438 (773)
|.|.|+|++|+||+..+... .++.+||||+++++++.+||+++++++||+|||.|.|.+.+. +..|.|+|||+|.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 78999999999999875421 224689999999999999999999999999999999999763 458999999999876
Q ss_pred CCCCCCCCCCCccEEEEEecCccccCC
Q 004100 439 GGDKAGGARDSRIGKVRIRLSTLETDR 465 (773)
Q Consensus 439 ~~~~~~~~~d~~lG~~~i~l~~l~~~~ 465 (773)
+|++||++.++|+++..+.
T Consensus 81 --------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 --------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred --------CCcceEEEEEEHHHHHhhC
Confidence 8999999999999997654
No 82
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.71 E-value=7.7e-17 Score=142.92 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=85.9
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 441 (773)
+.|.|.|++|++|+.. +..||||++++|+++.+|++++++ ||.|||.|.|.+.++...|.|+|||+|.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~------~~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~---- 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAP------DKFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI---- 70 (127)
T ss_pred ceEEEEEEEeeCCCCC------CCCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc----
Confidence 6899999999999643 456999999999999999999884 99999999999988877899999999865
Q ss_pred CCCCCCCCccEEEEEecCccccCCeE--EeeEEeEe
Q 004100 442 KAGGARDSRIGKVRIRLSTLETDRVY--THSYPLLV 475 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~ 475 (773)
+|++||++.|+|+++..+... ..||+|..
T Consensus 71 -----~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 71 -----WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred -----CCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 699999999999998755444 78999963
No 83
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.71 E-value=8.2e-17 Score=146.24 Aligned_cols=115 Identities=23% Similarity=0.376 Sum_probs=96.8
Q ss_pred ccCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEE-ec--C
Q 004100 22 ITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFS-KD--R 95 (773)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~-v~--~ 95 (773)
+|...+++.|+ +..+.|.|+|++|+||+..+..+.+||||++.+.+ ++++|+++++ .||+|||+|.|. +. +
T Consensus 2 ~G~l~~sl~Y~--~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~ 78 (124)
T cd08389 2 CGDLDVAFEYD--PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEE 78 (124)
T ss_pred CEEEEEEEEEC--CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHH
Confidence 35567777777 44568999999999999999888999999988743 5788998887 999999999998 53 3
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004100 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
+....|.|+|||.+.. ++++||++.|+|.++..+. ....||+|+
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~-----~~~~w~~L~ 123 (124)
T cd08389 79 LNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEG-----ETTVWLTLE 123 (124)
T ss_pred hccCEEEEEEEECCCcccCceEEEEEEeccccCCCC-----CceEEEeCC
Confidence 4578899999999988 8999999999999996542 467899986
No 84
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.71 E-value=6.7e-17 Score=143.82 Aligned_cols=104 Identities=36% Similarity=0.575 Sum_probs=91.1
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeeeeccCCCCCCee-ecEEEEEecC--CCCceEEEEEEeCCCC-CCe
Q 004100 40 LYVRVVKAKDLPPKDV-TGSCDPYVEVKMGNYKGTTRHFEKKTNPEW-NQVFAFSKDR--IQSSVLEVTVKDKDFV-KDD 114 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~-~~~~dpyv~v~~~~~~~~T~~~~~~~nP~W-nE~f~f~v~~--~~~~~l~i~V~d~~~~-~d~ 114 (773)
|.|+|++|+||+..+. .+.+||||++.+++++++|++++++.||.| ||+|.|.+.. +....|.|+|||.+.. +++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6899999999998874 688999999999999999999999999999 9999999854 3357899999999988 889
Q ss_pred eeEEEEEEcCccCCCCCCCCCCcCeEEEeee
Q 004100 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (773)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (773)
+||++.+++.++.... +......||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~--~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKD--SVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccC--CccccCCeEEccc
Confidence 9999999999998742 1334789999976
No 85
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=9e-17 Score=146.79 Aligned_cols=121 Identities=31% Similarity=0.416 Sum_probs=100.3
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC--eeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCC
Q 004100 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ--KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLH 438 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~--~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~ 438 (773)
+|.|+|.|++|+||+..+ ...+.+||||++.+++ ...+|+++.++.||.|||.|.|.+....+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~--~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSD--IIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCccc--ccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCC
Confidence 489999999999998542 1345799999999987 789999999999999999999999866889999999998765
Q ss_pred CCCCCCCCCCCccEEEEEecCccccCCeEEe-eEEeEeecCCCcccccEEEEEEEEee
Q 004100 439 GGDKAGGARDSRIGKVRIRLSTLETDRVYTH-SYPLLVLYPNGVKKMGEIHLAVRFTC 495 (773)
Q Consensus 439 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~-~~~L~~~~~~g~~~~G~v~l~~~~~~ 495 (773)
+|++||++.+++.++..+..... ++++. ..| +..|+|++.++|.|
T Consensus 79 --------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~---~~~-k~~G~i~~~l~~~p 124 (124)
T cd04044 79 --------KDKLIGTAEFDLSSLLQNPEQENLTKNLL---RNG-KPVGELNYDLRFFP 124 (124)
T ss_pred --------CCceeEEEEEEHHHhccCccccCcchhhh---cCC-ccceEEEEEEEeCC
Confidence 78999999999999987766653 44443 123 45699999999843
No 86
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.71 E-value=1.2e-16 Score=146.65 Aligned_cols=115 Identities=30% Similarity=0.494 Sum_probs=97.2
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEec--C
Q 004100 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--R 95 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~--~ 95 (773)
|..++++.|+ ...+.|.|+|++|+||+..+..+.+||||++.+.+ .+++|++++++.||+|||+|.|.+. +
T Consensus 3 G~l~~~l~y~--~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 3 GRIQLTIRYS--SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred eEEEEEEEEe--CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 4456777766 55679999999999999999889999999999963 5789999999999999999999984 3
Q ss_pred CCCceEEEEEEeCCCC---CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004100 96 IQSSVLEVTVKDKDFV---KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
+....|.|.|||.+.. ++++||++.++|.++..+. ....||+|+
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~ 127 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK-----GFTQWYDLT 127 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccC-----CccceEECc
Confidence 4457899999999873 7999999999999996542 357899984
No 87
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.71 E-value=8.4e-17 Score=141.93 Aligned_cols=94 Identities=22% Similarity=0.340 Sum_probs=82.9
Q ss_pred eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCC-CCceEEEEEEeCCCC-
Q 004100 38 QYLYVRVVKAKDLPPKDVT----GSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI-QSSVLEVTVKDKDFV- 111 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~----~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~-~~~~l~i~V~d~~~~- 111 (773)
|+|.|+|++|++|+..+.. +.+||||++.++++++||++++++.||+|||+|.|.+.+. ....|.|+|||++..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 6899999999999987632 3589999999999999999999999999999999998543 345899999999988
Q ss_pred CCeeeEEEEEEcCccCCCCC
Q 004100 112 KDDFMGRVLFDLNEIPKRVP 131 (773)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~ 131 (773)
+|++||++.++|.+|..+.+
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCcceEEEEEEHHHHHhhCC
Confidence 99999999999999987643
No 88
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=9.5e-17 Score=146.83 Aligned_cols=113 Identities=38% Similarity=0.620 Sum_probs=93.7
Q ss_pred CcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEec---C
Q 004100 24 GDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD---R 95 (773)
Q Consensus 24 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~---~ 95 (773)
...+++.|+ +..+.|.|+|++|+||+..+..+.+||||++.+.+ .+++|++++++.||+|||+|.|.+. +
T Consensus 4 ~l~~~l~~~--~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 81 (125)
T cd04031 4 RIQIQLWYD--KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET 81 (125)
T ss_pred EEEEEEEEe--CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence 345555655 55679999999999999998888999999999975 5789999999999999999999863 2
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004100 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
+....|.|+|||.+.. ++++||++.++|.+...+ ....||+|+
T Consensus 82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~------~~~~W~~L~ 125 (125)
T cd04031 82 LKERTLEVTVWDYDRDGENDFLGEVVIDLADALLD------DEPHWYPLQ 125 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeeEEEEeccccccc------CCcceEECc
Confidence 3467899999999988 899999999999983322 135899985
No 89
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=2.2e-16 Score=144.66 Aligned_cols=114 Identities=27% Similarity=0.400 Sum_probs=100.7
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCC--CCceEEEEEEeCCCC-CCeeeEEEE
Q 004100 44 VVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI--QSSVLEVTVKDKDFV-KDDFMGRVL 120 (773)
Q Consensus 44 v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~--~~~~l~i~V~d~~~~-~d~~lG~~~ 120 (773)
|++|++|+. ..+.+||||++.+++.+++|++++++.||+|||+|.|.+... ....|.|+|||++.. ++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999998 578999999999999999999999999999999999999653 468899999999988 899999999
Q ss_pred EEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEecc
Q 004100 121 FDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQ 164 (773)
Q Consensus 121 i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~ 164 (773)
++++++..+. ....|++|.+..+....|+|+++++|.+.
T Consensus 80 ~~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 80 VSLQDLVSEG-----LLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred EEhhHcccCC-----ceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 9999998643 35789999887766667999999999864
No 90
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.70 E-value=2.4e-16 Score=144.89 Aligned_cols=124 Identities=23% Similarity=0.422 Sum_probs=102.7
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCee-eeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCC
Q 004100 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHG 439 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~ 439 (773)
...|.|.|++|+||+++ .||||.+.+++.. .||+++.++.||.|||.|.|++..+...++|.||+.+...
T Consensus 10 ~~sL~v~V~EAk~Lp~~--------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~- 80 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK--------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK- 80 (146)
T ss_pred EEEEEEEEEEccCCCCc--------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc-
Confidence 36899999999999874 3799999999988 5999999999999999999988777788999998654321
Q ss_pred CCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCC-------cccccEEEEEEEEeec
Q 004100 440 GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNG-------VKKMGEIHLAVRFTCS 496 (773)
Q Consensus 440 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-------~~~~G~v~l~~~~~~~ 496 (773)
+ +..++++||++.|++.++..+.....||||....... ....+.|+++++|.+.
T Consensus 81 ~---~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 81 K---KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred c---cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 0 1125789999999999999999999999998776543 2335789999999664
No 91
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.70 E-value=8.1e-17 Score=144.83 Aligned_cols=102 Identities=25% Similarity=0.477 Sum_probs=86.2
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecCC-CCceEEEEEEeCC
Q 004100 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRI-QSSVLEVTVKDKD 109 (773)
Q Consensus 36 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~~-~~~~l~i~V~d~~ 109 (773)
..+.|.|+|++|+||++.+ .|.+||||++.+.+ .+++|++++++.||+|||+|.|.+... ....|.|+|||.+
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 3468999999999999988 78999999999975 356899999999999999999998431 2356899999998
Q ss_pred CC--CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEe
Q 004100 110 FV--KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (773)
Q Consensus 110 ~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (773)
.. ++++||.+.|+|.++..+. ...+||.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~-----~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQK-----EISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCc-----cccceEeC
Confidence 76 4799999999999997442 35789986
No 92
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.70 E-value=1.2e-16 Score=142.52 Aligned_cols=107 Identities=26% Similarity=0.372 Sum_probs=93.4
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeecccCCCCCccccceEEEEeeCCC----CCeEEEEEEEcc
Q 004100 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF----EEHLILTVEDRV 272 (773)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~----~~~l~i~V~d~~ 272 (773)
|+.+.|+|+|++|++|. ++.+||||++++++++++|+++++ +.||.|||+|.|.+..+. +..|.|+|||++
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 46788999999999998 467999999999999999999876 999999999999986543 468999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceEEEcccC
Q 004100 273 APNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKH 309 (773)
Q Consensus 273 ~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~ 309 (773)
..+++++||++.++|+++... +.+....+|++|.++
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~~-~~~~~~~~w~~L~~~ 111 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYDQ-PDHAFLRKWLLLTDP 111 (111)
T ss_pred ccccCCccEEEEECCccccCC-CCCcceEEEEEeeCc
Confidence 888899999999999999753 456778999999764
No 93
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.70 E-value=2.1e-16 Score=144.50 Aligned_cols=123 Identities=27% Similarity=0.417 Sum_probs=97.7
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC--
Q 004100 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG-- 440 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~-- 440 (773)
.|+|.|++|++|+.. +..|.+||||++.+++...+|+++.++.||.|||.|.|.+..+...|.|+|||+|....+
T Consensus 2 ~L~V~vi~a~~L~~~---d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAK---DKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCC---CCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 689999999999987 455789999999999999999999999999999999999987778999999999852100
Q ss_pred -CCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEE
Q 004100 441 -DKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAV 491 (773)
Q Consensus 441 -~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~ 491 (773)
.+...+++++||.+.+++.++... ...||+|.....++ ...|+|.|++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccCC--CCeEEECccCCCCC-cEeEEEEEEC
Confidence 011123689999999999988644 36899997544332 2368888763
No 94
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.70 E-value=2.4e-16 Score=143.22 Aligned_cols=114 Identities=24% Similarity=0.371 Sum_probs=97.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-C--Cee
Q 004100 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMG-NYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K--DDF 115 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~-~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~--d~~ 115 (773)
|+|+|++|++|+..+..+.+||||++.++ .+.++|++++++.||.|||+|.|.+.. ...|.|+|||++.. + |++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence 78999999999999888999999999997 578899999999999999999999975 67999999999887 3 589
Q ss_pred eEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC---CceeeEEEEEE
Q 004100 116 MGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG---DKVRGELMLAV 159 (773)
Q Consensus 116 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~---~~~~G~i~l~~ 159 (773)
||++.+++.++..... ....||+|..... ....|+|.+++
T Consensus 80 lG~~~i~l~~l~~~~~----~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLKD----TGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccCC----CccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999975432 2457999977653 34679988764
No 95
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.70 E-value=6.9e-17 Score=143.73 Aligned_cols=102 Identities=27% Similarity=0.403 Sum_probs=89.7
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCcc-ccEEEEEEeCC---CceEEEEEEeCCCCCC
Q 004100 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKW-NEQYTWEVFDP---CTVITIGVFDNCHLHG 439 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w-ne~~~f~v~~~---~~~l~v~v~d~~~~~~ 439 (773)
|.|+|++|+||+.++. ..|.+||||++.++++..||+++++++||.| ||.|.|.+... ...|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~d~--~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~- 77 (110)
T cd08688 1 LKVRVVAARDLPVMDR--SSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS- 77 (110)
T ss_pred CEEEEEEEECCCcccc--CCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC-
Confidence 5799999999998742 2578999999999999999999999999999 99999999863 478999999999876
Q ss_pred CCCCCCCCCCccEEEEEecCcccc---CCeEEeeEEeEe
Q 004100 440 GDKAGGARDSRIGKVRIRLSTLET---DRVYTHSYPLLV 475 (773)
Q Consensus 440 ~~~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~ 475 (773)
++++||++.++++++.. +..+..||+|.+
T Consensus 78 -------~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 -------ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred -------CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 78999999999999976 456889999964
No 96
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.70 E-value=2.2e-16 Score=144.08 Aligned_cols=104 Identities=27% Similarity=0.351 Sum_probs=90.7
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC---eeeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEEe
Q 004100 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFD 433 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d 433 (773)
..+.|.|+|++|+||+.. +..+.+||||++.+.+ ...||++++++.||.|||.|.|.+... ...|.|+|||
T Consensus 14 ~~~~L~V~v~~a~~L~~~---d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 14 QSNQLTVGIIQAADLPAM---DMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred CCCEEEEEEEEeeCCCCc---cCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 347999999999999987 4457899999999843 467999999999999999999998752 5689999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004100 434 NCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 434 ~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
++.++ ++++||++.++++++..+....+|++|.
T Consensus 91 ~d~~~--------~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 91 FDRFS--------KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCCC--------CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 98875 7899999999999998888889999984
No 97
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.70 E-value=1e-16 Score=146.57 Aligned_cols=118 Identities=25% Similarity=0.350 Sum_probs=101.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccC-CCCCCeeecEEEEEecCCC----CceEEEEEEeCCCC-
Q 004100 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFE-KKTNPEWNQVFAFSKDRIQ----SSVLEVTVKDKDFV- 111 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-~~~~T~~~~-~~~nP~WnE~f~f~v~~~~----~~~l~i~V~d~~~~- 111 (773)
.|+|+|++|++|+..+..+.+||||++++++ ++++|+++. ++.||.|||+|.|.+.+.. ...|.|+|||.+..
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 3899999999999988889999999999998 889999985 5899999999999997653 68899999999986
Q ss_pred CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEE
Q 004100 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELML 157 (773)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l 157 (773)
+|++||++.+++.++..+...+......||+|....| +..|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g-~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG-KPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC-CcCeEEeC
Confidence 8999999999999999775433345678999998765 46788864
No 98
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.70 E-value=3e-16 Score=143.50 Aligned_cols=113 Identities=35% Similarity=0.614 Sum_probs=97.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-------
Q 004100 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV------- 111 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~------- 111 (773)
.|+|+|++|++|+..|..+.+||||++.++++.++|+++.++.||.|||+|.|.+... ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccce
Confidence 5899999999999999889999999999998899999999999999999999988654 46899999999841
Q ss_pred -----CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCC-ceeeEEEEEE
Q 004100 112 -----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAV 159 (773)
Q Consensus 112 -----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~ 159 (773)
++++||.+.+++.++... ...||+|....+. ..+|+|.+++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~~-------~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHccCC-------CCeEEECccCCCCCcEeEEEEEEC
Confidence 689999999999987422 4699999976543 5789999863
No 99
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.70 E-value=1.2e-16 Score=148.64 Aligned_cols=101 Identities=21% Similarity=0.280 Sum_probs=86.4
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEe---------------C
Q 004100 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVF---------------D 422 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~---------------~ 422 (773)
.|.|.|++|+||+. ..|.+||||+|.+.+ ...+|+++++++||+|||.|.|++. +
T Consensus 1 kL~V~Vi~ArnL~~-----~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~ 75 (148)
T cd04010 1 KLSVRVIECSDLAL-----KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEED 75 (148)
T ss_pred CEEEEEEeCcCCCC-----CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccc
Confidence 47899999999986 237899999999966 5689999999999999999999995 1
Q ss_pred -CCceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccC-CeEEeeEEeEee
Q 004100 423 -PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD-RVYTHSYPLLVL 476 (773)
Q Consensus 423 -~~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~ 476 (773)
....|.|.|||++..+ +|++||++.|++..+..+ .....||+|...
T Consensus 76 ~~~~~L~i~V~d~~~~~--------~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 76 AEKLELRVDLWHASMGG--------GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred ccEEEEEEEEEcCCCCC--------CCceeEEEEEecccccccCCcCcceeecCCc
Confidence 1357999999998765 789999999999999887 567899999644
No 100
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.69 E-value=1.4e-16 Score=143.35 Aligned_cols=101 Identities=20% Similarity=0.346 Sum_probs=86.7
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCC--CceEEEEEEeC
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITIGVFDN 434 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v~v~d~ 434 (773)
+.|.|.|++|+||+++ + .|.+||||++.+.+ .+.||+++.++.||.|||+|.|++... ...|.|.|||.
T Consensus 12 ~~L~V~Vi~ar~L~~~---~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 12 RKLTLHVLEAKGLRST---N-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred CEEEEEEEEEECCCCC---C-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 7899999999999987 4 47899999999953 356999999999999999999998753 45799999998
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEe
Q 004100 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (773)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 473 (773)
+..+ .++++||.+.|++.++..+....+||+|
T Consensus 88 ~~~~-------~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKS-------RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCc-------CCCEEEEEEEecHHHhccCccccceEeC
Confidence 8643 1368999999999999888878999986
No 101
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=2.6e-16 Score=143.73 Aligned_cols=120 Identities=26% Similarity=0.339 Sum_probs=98.7
Q ss_pred eeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-C
Q 004100 37 MQYLYVRVVKAKDLPPKD-VTGSCDPYVEVKMGN--YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K 112 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d-~~~~~dpyv~v~~~~--~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~ 112 (773)
+|.|+|+|++|+||+..+ ..+.+||||++++++ ..++|+++.++.||.|||.|.|.+.. ..+.|.|+|||++.. +
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRK 79 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCC
Confidence 478999999999999655 346799999999998 78999999999999999999999873 478999999999988 8
Q ss_pred CeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEec
Q 004100 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
|++||++.+++.++..+... ...|+.+.. +.+..|+|++++.|.|
T Consensus 80 d~~iG~~~~~l~~l~~~~~~----~~~~~~~~~--~~k~~G~i~~~l~~~p 124 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQ----ENLTKNLLR--NGKPVGELNYDLRFFP 124 (124)
T ss_pred CceeEEEEEEHHHhccCccc----cCcchhhhc--CCccceEEEEEEEeCC
Confidence 99999999999999865321 123444442 3345799999998753
No 102
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.69 E-value=2.6e-16 Score=143.50 Aligned_cols=112 Identities=22% Similarity=0.408 Sum_probs=94.3
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC--C
Q 004100 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKD-VTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--I 96 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~--~ 96 (773)
..+++.|+ ...+.|.|+|++|+||+..+ ..+.+||||++.+.+ .+++|++++++.||+|||+|.|.+.. +
T Consensus 3 i~~~l~y~--~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l 80 (123)
T cd08521 3 IEFSLSYN--YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQL 80 (123)
T ss_pred EEEEEEEe--CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHh
Confidence 45666675 55679999999999999888 678999999999843 46789999999999999999999853 3
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEe
Q 004100 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (773)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (773)
....|.|+|||.+.. ++++||++.++|.++..+. ....||+|
T Consensus 81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~w~~l 123 (123)
T cd08521 81 ETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDS-----QQSEWYPL 123 (123)
T ss_pred CCCEEEEEEEeCCCCcCCceeeEEEEecccccccC-----CCccEEEC
Confidence 467899999999988 8999999999999997542 35789986
No 103
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.69 E-value=1.1e-16 Score=142.64 Aligned_cols=100 Identities=31% Similarity=0.473 Sum_probs=86.7
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEecCC---CCceEEEEEEeCCC
Q 004100 38 QYLYVRVVKAKDLPPKDVT-GSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRI---QSSVLEVTVKDKDF 110 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~-~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v~~~---~~~~l~i~V~d~~~ 110 (773)
|+|+|+|++|++|+..+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+... ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999987 8999999999954 467999999999999999999987542 35689999999999
Q ss_pred C-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeee
Q 004100 111 V-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (773)
Q Consensus 111 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (773)
. +|++||++.+++.++... ..|+++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~--------~~~~~~~~ 108 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED--------RNWMGRRE 108 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC--------CCCCcccc
Confidence 8 899999999999999843 46777653
No 104
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.69 E-value=2.2e-16 Score=139.26 Aligned_cols=102 Identities=25% Similarity=0.420 Sum_probs=91.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCceeE
Q 004100 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLG 281 (773)
Q Consensus 202 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d~~iG 281 (773)
|.|+|++|++|+..+..+.+||||+++++++.++|+++++ +.||.|||.|.|.+.++..+.|.|+|+|++. +++||
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKER-TNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccC-CCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 7899999999999988899999999999999999999876 9999999999999988777899999999875 88999
Q ss_pred EEEEeccccccccCCCCCCceEEEcccC
Q 004100 282 KCMIPLQYVDKRLDHKPVNTRWYNLEKH 309 (773)
Q Consensus 282 ~~~i~L~~l~~~~~~~~~~~~w~~L~~~ 309 (773)
++.++|.++... ......+||+|.+.
T Consensus 78 ~~~i~l~~l~~~--~~~~~~~w~~L~~~ 103 (105)
T cd04050 78 SLTLPLSELLKE--PDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEHHHhhcc--ccceeeeeEecCCC
Confidence 999999998743 23457899999874
No 105
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.69 E-value=6.5e-16 Score=142.51 Aligned_cols=115 Identities=27% Similarity=0.456 Sum_probs=98.4
Q ss_pred eEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCee-eeeeccCCCCCCeeecEEEEEecCCCCceEEEEEE
Q 004100 38 QYLYVRVVKAKDLPPKDVT----------GSCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVK 106 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~----------~~~dpyv~v~~~~~~-~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~ 106 (773)
|.|+|+|++|++|...+.. +.+||||++.+++++ .+|++++++.||.|||+|.|.+.+ ...|.|.||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~~v~ 81 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLELTVF 81 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEEEEE
Confidence 6899999999999988752 579999999999854 689999999999999999999974 578999999
Q ss_pred eCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEec
Q 004100 107 DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 107 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
|.+.. ++++||++.++|.++..+. ......|++|.. .|.|++.+.+..
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~---~~~~~~w~~L~~------~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRG---SGSFDLWVDLEP------QGKLHVKIELKG 130 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccC---CCcccEEEEccC------CcEEEEEEEEec
Confidence 99887 8899999999999998641 223679999972 489999987764
No 106
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.68 E-value=3.2e-16 Score=143.24 Aligned_cols=115 Identities=31% Similarity=0.500 Sum_probs=96.4
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeccCCCCCCeeecEEEEEec---CC
Q 004100 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG---NYKGTTRHFEKKTNPEWNQVFAFSKD---RI 96 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~---~~~~~T~~~~~~~nP~WnE~f~f~v~---~~ 96 (773)
|...++..|+ ...+.|.|+|++|+||+..+..+.+||||++.+. +++.+|++++++.||.|||+|.|.+. .+
T Consensus 3 G~l~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l 80 (125)
T cd08386 3 GRIQFSVSYD--FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKL 80 (125)
T ss_pred cEEEEEEEEC--CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHh
Confidence 3456666776 4556899999999999999888899999999993 36789999999999999999999742 23
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004100 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
....|.++|||++.. ++++||++.+++.++..+. ....|+.|.
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~l~ 124 (125)
T cd08386 81 QQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTE-----EQTFWKDLK 124 (125)
T ss_pred CCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCC-----CcceEEecC
Confidence 456899999999988 8999999999999998643 367899885
No 107
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.68 E-value=3.2e-16 Score=143.69 Aligned_cols=106 Identities=21% Similarity=0.276 Sum_probs=90.4
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-----CeeeeeeeccCCCCCccccEEEEEEeCC---CceEEEE
Q 004100 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIG 430 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~ 430 (773)
+..+.|.|.|++|+||+.. +..+.+||||++.+. ....||++++++.||.|||.|.|.+... ...|.|.
T Consensus 13 ~~~~~L~V~vi~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~ 89 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPC---DSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVA 89 (127)
T ss_pred CCCCEEEEEEEEEECCCCc---cCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEE
Confidence 3347999999999999987 445789999999984 3568999999999999999999998643 4789999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEe
Q 004100 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 473 (773)
|||++.+. .+++++||.+.|++.++..+.....||+|
T Consensus 90 v~~~~~~~------~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 90 VKNSKSFL------SREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EEECCccc------CCCCceEEEEEEecccccccCCccceEEC
Confidence 99998641 01689999999999999888888999997
No 108
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=2e-16 Score=147.21 Aligned_cols=95 Identities=26% Similarity=0.367 Sum_probs=82.7
Q ss_pred eEEEEEEEccCCCCCccCC-----------CCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC--CceEEE
Q 004100 363 VLELGILNAQGLMPMKTKD-----------GRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITI 429 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~-----------~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v 429 (773)
.|.|+|++|++|+.+|... ..+.+||||+|.++++..||+++++++||+|||+|.|++..+ ...|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 3789999999999986421 235799999999999999999999999999999999998754 579999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCC
Q 004100 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDR 465 (773)
Q Consensus 430 ~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 465 (773)
+|||+|..+ +|++||++.|+++++....
T Consensus 81 ~v~D~d~~~--------~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 81 QIRDWDRVG--------NDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEECCCCC--------CCCEEEEEEEeHHHhccCC
Confidence 999999876 7999999999999986543
No 109
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.68 E-value=4.8e-16 Score=143.36 Aligned_cols=117 Identities=22% Similarity=0.355 Sum_probs=99.2
Q ss_pred ceEEEEEEEccCCCCCccCC-------CCCCCCcEEEEEECCee-eeeeeccCCCCCccccEEEEEEeCCCceEEEEEEe
Q 004100 362 GVLELGILNAQGLMPMKTKD-------GRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFD 433 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~-------~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d 433 (773)
|.|+|.|++|+||...+... +.+.+||||++.++++. .+|++++++.||.|||+|.|.+. ....|.|.|||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d 82 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFH 82 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEe
Confidence 88999999999998764310 13679999999999866 69999999999999999999997 46789999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEecCcccc--CCeEEeeEEeEeecCCCcccccEEEEEEEEee
Q 004100 434 NCHLHGGDKAGGARDSRIGKVRIRLSTLET--DRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (773)
Q Consensus 434 ~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~ 495 (773)
++.++ ++++||++.++|+++.. +.....|++|. ..|+|+|++.+..
T Consensus 83 ~~~~~--------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 83 DAAIG--------PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred CCCCC--------CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 98765 78999999999999877 56678999994 3599999998743
No 110
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.68 E-value=4e-16 Score=142.66 Aligned_cols=102 Identities=24% Similarity=0.350 Sum_probs=85.6
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeC----CCceEEEE
Q 004100 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIG 430 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~ 430 (773)
..+.|.|.|++|+||+.+ +..+.+||||++.+.+ ...||++++++.||.|||.|.|.+.. ....|.|+
T Consensus 14 ~~~~L~V~vi~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~ 90 (125)
T cd04031 14 VTSQLIVTVLQARDLPPR---DDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVT 90 (125)
T ss_pred CCCEEEEEEEEecCCCCc---CCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEE
Confidence 347999999999999987 4457899999999964 56799999999999999999998754 25789999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEe
Q 004100 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 473 (773)
|||++..+ ++++||++.++|++...+ ....||+|
T Consensus 91 V~d~~~~~--------~~~~iG~~~i~l~~~~~~-~~~~W~~L 124 (125)
T cd04031 91 VWDYDRDG--------ENDFLGEVVIDLADALLD-DEPHWYPL 124 (125)
T ss_pred EEeCCCCC--------CCcEeeEEEEeccccccc-CCcceEEC
Confidence 99998765 789999999999983222 23689998
No 111
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=4.5e-16 Score=142.55 Aligned_cols=115 Identities=22% Similarity=0.339 Sum_probs=99.9
Q ss_pred EEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCC
Q 004100 368 ILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAG 444 (773)
Q Consensus 368 v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~ 444 (773)
|++|+||+. ..|.+||||++.+++...+|++++++.||+|||.|.|++..+ ...|.|+|||++..+
T Consensus 2 vi~a~~L~~-----~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~------ 70 (127)
T cd08373 2 VVSLKNLPG-----LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG------ 70 (127)
T ss_pred eEEeeCCcc-----cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC------
Confidence 688999985 347899999999999999999999999999999999999753 689999999998875
Q ss_pred CCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEEeecc
Q 004100 445 GARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSS 497 (773)
Q Consensus 445 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~~~ 497 (773)
+|++||++.++++++..+.....|++|...+ +....|+++++++|.|+.
T Consensus 71 --~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 71 --RNRLIGSATVSLQDLVSEGLLEVTEPLLDSN--GRPTGATISLEVSYQPPD 119 (127)
T ss_pred --CCceEEEEEEEhhHcccCCceEEEEeCcCCC--CCcccEEEEEEEEEeCCC
Confidence 7899999999999999988889999997543 323358999999997764
No 112
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.68 E-value=5.8e-16 Score=141.41 Aligned_cols=104 Identities=22% Similarity=0.282 Sum_probs=86.6
Q ss_pred ccceEEEEEEEccCCCCCccCCCC-CCCCcEEEEEEC---CeeeeeeeccCCCCCccccEEEEEEeC----CCceEEEEE
Q 004100 360 SIGVLELGILNAQGLMPMKTKDGR-GTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGV 431 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~-~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v 431 (773)
..+.|+|+|++|+||+.. +.. +.+||||++.+. ++..||+++++++||.|||+|.|.... ....|.+.|
T Consensus 14 ~~~~L~V~Vi~a~~L~~~---~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 14 EKKALLVNIIECRDLPAM---DEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred CCCEEEEEEEEeECCCCC---CCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 347999999999999987 443 789999999985 346799999999999999999994332 245799999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccC--CeEEeeEEeE
Q 004100 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD--RVYTHSYPLL 474 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~ 474 (773)
||+|.++ +|++||++.|+|+++... +....|.+|.
T Consensus 91 ~d~d~~~--------~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 91 LSFDRYS--------RDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEcCCCC--------CCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9998876 799999999999998544 7788898874
No 113
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.68 E-value=5.5e-16 Score=141.70 Aligned_cols=104 Identities=26% Similarity=0.357 Sum_probs=89.9
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE---CCeeeeeeeccCCCCCccccEEEEEEeC----CCceEEEEEE
Q 004100 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---GQKWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGVF 432 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~~~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v~ 432 (773)
..+.|.|.|++|+||+.+ +..+.+||||++.+ ++...+|++++++.||.|||.|.|.+.. ....|.++||
T Consensus 14 ~~~~L~v~v~~a~~L~~~---d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 14 QESTLTLKILKAVELPAK---DFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred CCCEEEEEEEEecCCCCc---cCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 347999999999999887 45578999999998 3467899999999999999999998542 2457999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004100 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
|++.++ ++++||++.++++++..+.....|++|.
T Consensus 91 d~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 91 DYDRFS--------RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eCCCCc--------CCcEeeEEEEecccccCCCCcceEEecC
Confidence 998875 7899999999999999888889999984
No 114
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.67 E-value=4.9e-16 Score=141.17 Aligned_cols=118 Identities=25% Similarity=0.317 Sum_probs=94.4
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-CeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 004100 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-QKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~ 442 (773)
|+|+|++|+||+.+ +..+.+||||++.++ .+.+||+++++++||.|||.|.|++.. ...|.|+|||++.++
T Consensus 2 l~v~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~---- 73 (123)
T cd08382 2 VRLTVLCADGLAKR---DLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFK---- 73 (123)
T ss_pred eEEEEEEecCCCcc---CCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCC----
Confidence 78999999999887 445789999999996 677899999999999999999999965 789999999998764
Q ss_pred CCCCCCCccEEEEEecCccccCC-eEEeeEEeEeecCCCc-ccccEEEEEE
Q 004100 443 AGGARDSRIGKVRIRLSTLETDR-VYTHSYPLLVLYPNGV-KKMGEIHLAV 491 (773)
Q Consensus 443 ~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~g~-~~~G~v~l~~ 491 (773)
...|++||++.++++++.... ....||+|........ .-.|+|.+++
T Consensus 74 --~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 --KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred --CCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 112689999999999986543 3367999966543211 2257777664
No 115
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.67 E-value=5.1e-16 Score=141.52 Aligned_cols=105 Identities=19% Similarity=0.329 Sum_probs=89.7
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCC---CceEEEE
Q 004100 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIG 430 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~ 430 (773)
+..+.|.|.|++|+||+.++. ..+.+||||++.+.+ ...+|++++++.||.|||+|.|.+... ...|.|+
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~--~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADE--KKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCC--CCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 344899999999999998741 457899999998832 457999999999999999999998753 5689999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEe
Q 004100 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 473 (773)
|||++.++ ++++||.+.++++++..+.....||+|
T Consensus 89 v~d~~~~~--------~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFG--------RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCc--------CCceeeEEEEecccccccCCCccEEEC
Confidence 99998775 789999999999999877778899986
No 116
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.67 E-value=3.2e-16 Score=148.76 Aligned_cols=105 Identities=30% Similarity=0.451 Sum_probs=89.7
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeecEEEEEe---cCCCCceEEEEEEe
Q 004100 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG-----NYKGTTRHFEKKTNPEWNQVFAFSK---DRIQSSVLEVTVKD 107 (773)
Q Consensus 36 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~-----~~~~~T~~~~~~~nP~WnE~f~f~v---~~~~~~~l~i~V~d 107 (773)
..|.|.|+|++|+||+..+..+.+||||++.+. .++++|++++++.||.|||+|.|.+ .+.....|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 668999999999999999988999999999983 2578999999999999999999985 23345689999999
Q ss_pred CCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeee
Q 004100 108 KDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (773)
Q Consensus 108 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (773)
.+.+ ++++||++.+++.++.... ....|+.|..
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~~~~-----~~~~w~~~~~ 138 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGKSYG-----QAVDWMDSTG 138 (162)
T ss_pred CCCCCCCceEEEEEEeCCccccCC-----CccccccCCh
Confidence 9988 8999999999999987543 2467877754
No 117
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.67 E-value=1.2e-15 Score=139.66 Aligned_cols=118 Identities=29% Similarity=0.466 Sum_probs=99.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCe
Q 004100 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDD 114 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~ 114 (773)
.|+|+|++|++|+..+..+.+||||++.+++ ..++|++++++.||.|||+|.|.+.......|.|+|||.+.. +++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 6899999999999998889999999999875 367999999999999999999999765567899999999988 899
Q ss_pred eeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEecc
Q 004100 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQ 164 (773)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~ 164 (773)
+||++.++|.++.... +......|++|.. .|+|++.+.+...
T Consensus 82 ~iG~~~i~l~~~~~~~--~~~~~~~w~~l~~------~g~i~l~~~~~~~ 123 (126)
T cd04043 82 LCGRASLKLDPKRFGD--DGLPREIWLDLDT------QGRLLLRVSMEGE 123 (126)
T ss_pred eEEEEEEecCHHHcCC--CCCCceEEEEcCC------CCeEEEEEEEeee
Confidence 9999999999865432 1223568999964 4788888877653
No 118
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.67 E-value=2.9e-16 Score=141.59 Aligned_cols=105 Identities=17% Similarity=0.245 Sum_probs=89.3
Q ss_pred cCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CC----eeeeeeeccCCCCCccccEEEEEEeC---CCceEE
Q 004100 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQ----KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVIT 428 (773)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~----~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~ 428 (773)
.+..+.|.|.|++|+||+++ +..+.+||||++.+ ++ .+.||+++++++||+|||.|.|++.. ....|.
T Consensus 10 ~~~~~~L~V~V~~arnL~~~---~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~ 86 (124)
T cd08680 10 DSGDSSLVISVEQLRNLSAL---SIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQ 86 (124)
T ss_pred CCCCCEEEEEEeEecCCccc---ccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEE
Confidence 45558999999999999987 45688999999998 22 46899999999999999999999874 367999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccC-CeEEeeEEe
Q 004100 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD-RVYTHSYPL 473 (773)
Q Consensus 429 v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L 473 (773)
|.|||.+.++ ++++||.+.|+|+++... ....+||+|
T Consensus 87 ~~V~~~~~~~--------~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 87 VDVCSVGPDQ--------QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEEeCCCCC--------ceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999998765 789999999999999554 457789875
No 119
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.67 E-value=1.5e-16 Score=146.02 Aligned_cols=117 Identities=26% Similarity=0.263 Sum_probs=94.1
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEec--C
Q 004100 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--R 95 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~--~ 95 (773)
|...+++.|+ +..+.|.|+|++|+||+..+..|.+||||++++.+ .+.+|++++++.||+|||+|.|.+. +
T Consensus 2 G~i~~sL~Y~--~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~ 79 (136)
T cd08406 2 GEILLSLSYL--PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIV 79 (136)
T ss_pred cEEEEEEEEc--CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHH
Confidence 3356666766 55568999999999999999889999999999953 2568999999999999999999984 3
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004100 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
+....|.|+|||.+.. ++++||++.+..... + +...+|..+....+
T Consensus 80 l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~--g-----~~~~hW~~ml~~~~ 126 (136)
T cd08406 80 LQDLSLRVTVAESTEDGKTPNVGHVIIGPAAS--G-----MGLSHWNQMLASLR 126 (136)
T ss_pred hCCcEEEEEEEeCCCCCCCCeeEEEEECCCCC--C-----hhHHHHHHHHHCCC
Confidence 5678899999999988 999999999976532 1 22456777666543
No 120
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.67 E-value=6.6e-16 Score=140.78 Aligned_cols=113 Identities=28% Similarity=0.477 Sum_probs=94.9
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEecC--CCC
Q 004100 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKD-VTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDR--IQS 98 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v~~--~~~ 98 (773)
..+++.|+ +..+.|.|+|++|+||+..+ ..+.+||||++++.+ ...+|++++++.||+|||+|.|.+.. ...
T Consensus 3 l~~~l~y~--~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~ 80 (123)
T cd08390 3 LWFSVQYD--LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQR 80 (123)
T ss_pred EEEEEEEC--CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcc
Confidence 45666666 55569999999999999988 578899999999843 56789999999999999999999853 234
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEee
Q 004100 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (773)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (773)
..|.|+|||.+.. ++++||++.++|.++.... ....|++|+
T Consensus 81 ~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~w~~L~ 122 (123)
T cd08390 81 RTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVK-----GGVVWRDLE 122 (123)
T ss_pred cEEEEEEEECCcCCCCcEEEEEEEeccceecCC-----CceEEEeCC
Confidence 6899999999988 8999999999999998753 246899986
No 121
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.67 E-value=1.1e-15 Score=141.28 Aligned_cols=120 Identities=26% Similarity=0.441 Sum_probs=98.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeecccCCCCCccccceEEEEeeCC---------CCCeEEEEEEEc
Q 004100 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEP---------FEEHLILTVEDR 271 (773)
Q Consensus 201 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~---------~~~~l~i~V~d~ 271 (773)
+|+|+|++|++|+.++..|.+||||++.+++++++|+++++ +.||.|||.|.|.+... ....|.++|||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 69999999999999999999999999999999999999876 99999999999975322 124689999999
Q ss_pred cCCCCCceeEEEEE-eccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEE
Q 004100 272 VAPNKDEVLGKCMI-PLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICL 332 (773)
Q Consensus 272 ~~~~~d~~iG~~~i-~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~ 332 (773)
+..++|++||++.+ ++..+.. .+......+|++|... ....|+|.+.+.+
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~-~~~~~~~~~W~~L~~~----------~~~~Geil~~~~~ 131 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDL-EEDFPPKLQWFPIYKG----------GQSAGELLAAFEL 131 (135)
T ss_pred cCCCCCccceEEEeeeeeeccc-CCCCCCCceEEEeecC----------CCchhheeEEeEE
Confidence 99899999999987 4444432 2234567899999754 2358999888875
No 122
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=6.7e-16 Score=143.72 Aligned_cols=108 Identities=28% Similarity=0.467 Sum_probs=90.9
Q ss_pred EEEEEEEeecCCCCCCC--------------CCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCC-CCceEEEE
Q 004100 40 LYVRVVKAKDLPPKDVT--------------GSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI-QSSVLEVT 104 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~--------------~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~-~~~~l~i~ 104 (773)
|.|+|++|++|+.+|.. +.+||||+|.+++++.+|++++++.||+|||+|.|.+..+ ..+.|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999998744 3789999999999999999999999999999999997432 35789999
Q ss_pred EEeCCCC-CCeeeEEEEEEcCccCCCCCCC--CCCcCeEEEeeeCC
Q 004100 105 VKDKDFV-KDDFMGRVLFDLNEIPKRVPPD--SPLAPQWYRLEDRK 147 (773)
Q Consensus 105 V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~--~~~~~~w~~L~~~~ 147 (773)
|||.|.. +|++||.+.+++.++....... ....++|+.|.+..
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 9999998 9999999999999987653110 12457999998764
No 123
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.66 E-value=3.9e-16 Score=139.16 Aligned_cols=98 Identities=28% Similarity=0.392 Sum_probs=84.6
Q ss_pred ceEEEEEEEccCCCCCccCCCC-CCCCcEEEEEEC---CeeeeeeeccCCCCCccccEEEEEEeCC----CceEEEEEEe
Q 004100 362 GVLELGILNAQGLMPMKTKDGR-GTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTWEVFDP----CTVITIGVFD 433 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~-~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v~v~d 433 (773)
|.|+|+|++|+||+.. +.. +.+||||++.+. ....+|+++++++||.|||.|.|.+..+ ...|.|+|||
T Consensus 1 G~L~V~v~~a~~L~~~---d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKA---DFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcc---cCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence 7899999999999987 444 789999999984 3468999999999999999999988753 5789999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEe
Q 004100 434 NCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (773)
Q Consensus 434 ~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 473 (773)
+|.++ +|++||++.++++++... ..|+++
T Consensus 78 ~d~~~--------~dd~lG~~~i~l~~l~~~---~~~~~~ 106 (111)
T cd04041 78 SDRFT--------ADDRLGRVEIDLKELIED---RNWMGR 106 (111)
T ss_pred CCCCC--------CCCcceEEEEEHHHHhcC---CCCCcc
Confidence 99876 789999999999999743 467776
No 124
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.66 E-value=1.4e-15 Score=144.49 Aligned_cols=105 Identities=21% Similarity=0.338 Sum_probs=89.9
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----CCeeeeeeeccCCCCCccccEEEEEEeCC----CceEEE
Q 004100 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTWEVFDP----CTVITI 429 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v 429 (773)
...|.|.|.|++|+||+.. +..+.+||||++.+ +...+||++++++.||.|||.|.|.+... ...|.|
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~---d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i 100 (162)
T cd04020 24 PSTGELHVWVKEAKNLPAL---KSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLEL 100 (162)
T ss_pred CCCceEEEEEEeeeCCCCC---CCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEE
Confidence 4569999999999999987 44688999999988 23568999999999999999999986432 458999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004100 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 430 ~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
+|||++.++ +|++||++.+++.++........|+.+.
T Consensus 101 ~V~d~d~~~--------~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 101 TVWDHDKLS--------SNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred EEEeCCCCC--------CCceEEEEEEeCCccccCCCccccccCC
Confidence 999999875 7999999999999997766678888774
No 125
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.65 E-value=1.3e-15 Score=138.31 Aligned_cols=104 Identities=19% Similarity=0.247 Sum_probs=88.6
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC---CeeeeeeeccCCCCCccccEEEEE-EeC---CCceEEEEE
Q 004100 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTWE-VFD---PCTVITIGV 431 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~-v~~---~~~~l~v~v 431 (773)
+..+.|.|+|++|+||+.. +..|.+||||++.+. .++.||+++++ .||+|||.|.|+ +.. ....|.+.|
T Consensus 13 ~~~~~L~V~Vi~a~nL~~~---~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V 88 (124)
T cd08389 13 PSARKLTVTVIRAQDIPTK---DRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRL 88 (124)
T ss_pred CCCCEEEEEEEEecCCCch---hcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEE
Confidence 3347899999999999987 445789999998762 35689999887 999999999998 443 267899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004100 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
||++.++ ++++||.+.|+|+++..+.....||+|.
T Consensus 89 ~~~~~~~--------~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 89 YGVERMR--------KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred EECCCcc--------cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9999876 7899999999999998888889999984
No 126
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.65 E-value=7.6e-16 Score=143.51 Aligned_cols=102 Identities=31% Similarity=0.534 Sum_probs=89.9
Q ss_pred ccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------eeeeeeccCCCCCC
Q 004100 33 LVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----------------------------YKGTTRHFEKKTNP 83 (773)
Q Consensus 33 ~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----------------------------~~~~T~~~~~~~nP 83 (773)
..++.+.|.|+|++|+||...|..|.+||||++.+.+ +.++|+++.++.||
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 3578899999999999999999999999999999964 23689999999999
Q ss_pred eeecEEEEEecCCCCceEEEEEEeCCCCCCeeeEEEEEEcCccCCCCCCCCCCcCeEEEe
Q 004100 84 EWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (773)
Q Consensus 84 ~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (773)
.|||+|.|.+.++....|.|+|||.+ +++||++.+++.++... ....||+|
T Consensus 103 ~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~------~~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSC------GLDSWFKL 153 (153)
T ss_pred ccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCCC------CCCCeEeC
Confidence 99999999997766789999999997 88999999999999832 25799986
No 127
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.65 E-value=1.6e-15 Score=139.33 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=85.7
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--C-e--eeeeeeccCCCCCccccEEEEEEeC---CCceEEEE
Q 004100 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--Q-K--WVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIG 430 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~-~--~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~ 430 (773)
+..+.|.|.|++|+||+.. +..|.+||||++.+. + + +.||+++++++||+|||+|.|.+.. ....|.|+
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~---~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~ 88 (136)
T cd08406 12 PTAERLTVVVVKARNLVWD---NGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVT 88 (136)
T ss_pred CCCCEEEEEEEEeeCCCCc---cCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEE
Confidence 4447999999999999987 556889999999983 2 2 5689999999999999999999875 36789999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004100 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
|||+|..+ ++++||++.|+... .+....+|..+..
T Consensus 89 V~~~d~~~--------~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 89 VAESTEDG--------KTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred EEeCCCCC--------CCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 99999876 78999999998764 4455567777654
No 128
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.65 E-value=1.5e-15 Score=140.86 Aligned_cols=91 Identities=30% Similarity=0.535 Sum_probs=83.8
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 004100 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG 440 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~ 440 (773)
.|.|+|.|++|+||+.. +. +.+||||+++++++..+|++++++.||.|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~---d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~-- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVR---DF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS-- 74 (145)
T ss_pred CeEEEEEEEeeECCCCC---CC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC--
Confidence 38899999999999875 33 6899999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCccEEEEEecCcccc
Q 004100 441 DKAGGARDSRIGKVRIRLSTLET 463 (773)
Q Consensus 441 ~~~~~~~d~~lG~~~i~l~~l~~ 463 (773)
+|++||++.+++.++..
T Consensus 75 ------~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 75 ------KDDSMGEAEIDLEPLVE 91 (145)
T ss_pred ------CCCEEEEEEEEHHHhhh
Confidence 78999999999998754
No 129
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.65 E-value=1.3e-15 Score=137.48 Aligned_cols=95 Identities=22% Similarity=0.394 Sum_probs=83.9
Q ss_pred cCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeC--CCceEEEEEEeCC
Q 004100 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD--PCTVITIGVFDNC 435 (773)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~--~~~~l~v~v~d~~ 435 (773)
....|.|+|+|++|+||+. +..+.+||||+|.++++.+||++++++.||+|||+|.|.... ....|+|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~----d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG----DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc----CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 4567999999999999974 455789999999999999999999999999999999998543 3789999999999
Q ss_pred CCCCCCCCCCCCCCccEEEEEecCccccC
Q 004100 436 HLHGGDKAGGARDSRIGKVRIRLSTLETD 464 (773)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~ 464 (773)
.++ +|++||++.++|.....+
T Consensus 100 ~~s--------~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 100 NGW--------DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCC--------CCCeeEEEEEEecCCcee
Confidence 876 899999999999976654
No 130
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.65 E-value=1.1e-15 Score=141.80 Aligned_cols=91 Identities=38% Similarity=0.569 Sum_probs=84.9
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004100 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (773)
.|.|+|+|++|+||+..+. +.+||||++++++++++|++++++.||+|||+|.|.+.++ ...+.|+|||++.+ +|++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~ 78 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDS 78 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCE
Confidence 3789999999999998886 8999999999999999999999999999999999999876 67899999999988 8999
Q ss_pred eEEEEEEcCccCCC
Q 004100 116 MGRVLFDLNEIPKR 129 (773)
Q Consensus 116 lG~~~i~l~~l~~~ 129 (773)
||.+.+++.++...
T Consensus 79 iG~a~i~l~~l~~~ 92 (145)
T cd04038 79 MGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEHHHhhhh
Confidence 99999999999865
No 131
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.64 E-value=1.7e-15 Score=138.18 Aligned_cols=104 Identities=28% Similarity=0.430 Sum_probs=91.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCC-CCCCeeecEEEEEecCC---CCceEEEEEEeCCCC-C
Q 004100 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEK-KTNPEWNQVFAFSKDRI---QSSVLEVTVKDKDFV-K 112 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~-~~nP~WnE~f~f~v~~~---~~~~l~i~V~d~~~~-~ 112 (773)
|.|.|+|++|++|+..+..+.+||||+++++++.++|+++.+ +.||.|||+|.|.+... ....|.|+|||.+.+ +
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 579999999999999888889999999999998889998874 89999999999999765 357899999999988 8
Q ss_pred CeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeC
Q 004100 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (773)
+++||++.+++.++..+. ..+.|++|...
T Consensus 81 d~~iG~~~i~l~~l~~~~-----~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEG-----VEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCC-----CCcCceEeecc
Confidence 999999999999998653 24688888775
No 132
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.64 E-value=1.2e-15 Score=137.86 Aligned_cols=94 Identities=28% Similarity=0.322 Sum_probs=83.6
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEec-CCCCceEEEEEEeCCCC-
Q 004100 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKD-RIQSSVLEVTVKDKDFV- 111 (773)
Q Consensus 34 ~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~-~~~~~~l~i~V~d~~~~- 111 (773)
...++.|.|+|++|++|+. +..+.+||||+|++++++++|++++++.||+|||+|.|... ......|.|+|||++..
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 4677899999999999984 56788999999999999999999999999999999999753 23568999999999998
Q ss_pred CCeeeEEEEEEcCccCC
Q 004100 112 KDDFMGRVLFDLNEIPK 128 (773)
Q Consensus 112 ~d~~lG~~~i~l~~l~~ 128 (773)
+|++||++.++|.....
T Consensus 103 ~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 103 DDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCeeEEEEEEecCCce
Confidence 99999999999997663
No 133
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.64 E-value=1.6e-15 Score=139.96 Aligned_cols=106 Identities=30% Similarity=0.455 Sum_probs=90.5
Q ss_pred ccCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeccCCCCCCeeecEEEEEec
Q 004100 22 ITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-------YKGTTRHFEKKTNPEWNQVFAFSKD 94 (773)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-------~~~~T~~~~~~~nP~WnE~f~f~v~ 94 (773)
+|...+++.|+ ...+.|.|+|++|++|+..+..+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+.
T Consensus 2 ~G~l~~~l~y~--~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~ 79 (133)
T cd04009 2 YGVLTVKAYYR--ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVP 79 (133)
T ss_pred ceEEEEEEEEc--CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEec
Confidence 34456666665 55679999999999999988888999999999963 4689999999999999999999985
Q ss_pred CC----CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCC
Q 004100 95 RI----QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKR 129 (773)
Q Consensus 95 ~~----~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~ 129 (773)
.. ....|.|+|||++.. ++++||++.++|.++..-
T Consensus 80 ~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 80 PEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred hhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 42 356899999999988 799999999999999854
No 134
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.64 E-value=1.4e-15 Score=139.40 Aligned_cols=89 Identities=29% Similarity=0.393 Sum_probs=76.5
Q ss_pred EEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----EEEEeecccCCCCCccccceEEEEeeCC--CCCeEEEEEEE
Q 004100 200 WYLRVNVIEAQDLQPTDK--GRFPEVYVKAQLGN-----QALRTRVSASRTINPMWNEDLMFVAAEP--FEEHLILTVED 270 (773)
Q Consensus 200 ~~L~V~v~~a~~L~~~~~--~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d 270 (773)
+.|.|.|++|+||..++. .+.+||||++++.. .+.||++.++ +.||+|||.|.|.+... .+..|.|+|+|
T Consensus 15 ~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 15 NRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred CeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 479999999999999883 34589999999964 2568888776 99999999999998653 35679999999
Q ss_pred ccCCCCCceeEEEEEeccc
Q 004100 271 RVAPNKDEVLGKCMIPLQY 289 (773)
Q Consensus 271 ~~~~~~d~~iG~~~i~L~~ 289 (773)
++..+++++||++.+++..
T Consensus 94 ~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 94 QDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CCCCcCcceeceEEecCcC
Confidence 9999999999999999875
No 135
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.64 E-value=5.5e-16 Score=143.28 Aligned_cols=114 Identities=25% Similarity=0.438 Sum_probs=93.8
Q ss_pred ceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC--CCC
Q 004100 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQS 98 (773)
Q Consensus 26 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~--~~~ 98 (773)
.+++.|+ ...+.|.|+|++|+||+..+..+.+||||++.+.+ .+++|++++++.||.|||+|.|.+.. +..
T Consensus 3 ~~~l~y~--~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~ 80 (133)
T cd08384 3 LVSLMYN--TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK 80 (133)
T ss_pred EEEEEEc--CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence 3455555 66789999999999999999888999999999964 36789999999999999999999853 345
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004100 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
..|.|+|||.+.. ++++||.+.+++.... ....+|+++....+
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~-------~~~~~W~~~l~~~~ 124 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGINAKG-------ERLRHWLDCLKNPD 124 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecCCCC-------chHHHHHHHHhCCC
Confidence 7899999999988 8999999999997521 22467888766544
No 136
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=2.5e-15 Score=135.54 Aligned_cols=104 Identities=27% Similarity=0.393 Sum_probs=92.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004100 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (773)
|.|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+... .+.|.|+|||++.. +|++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence 68999999999999998889999999999987 568999999999999999999998764 47899999999988 8899
Q ss_pred eEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004100 116 MGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 116 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
||++.+++.++..+. ...||.|.+.+.
T Consensus 80 IG~~~~~l~~l~~~~------~~~~~~~~~~~~ 106 (120)
T cd04045 80 LGSVEINVSDLIKKN------EDGKYVEYDDEE 106 (120)
T ss_pred eeEEEEeHHHhhCCC------CCceEEecCCCc
Confidence 999999999998652 367999888763
No 137
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.64 E-value=4.1e-15 Score=138.19 Aligned_cols=117 Identities=23% Similarity=0.347 Sum_probs=93.0
Q ss_pred EEEEEEEccC--CCCCccCCCCCCCCcEEEEEE-----CCeeeeeeeccCCCCCccccEEEEEEeCC---------CceE
Q 004100 364 LELGILNAQG--LMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTWEVFDP---------CTVI 427 (773)
Q Consensus 364 l~v~v~~a~~--L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~f~v~~~---------~~~l 427 (773)
..++|..|+| |+.. +..+.+||||++.+ +.+..||+++++|+||+|||.|.|.+... ...|
T Consensus 4 ~el~i~~~~~~~l~~~---~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPSG---WNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCCC---cCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 4455666666 5655 45678999999986 34679999999999999999999999654 3479
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCc-ccccEEEEEEEEe
Q 004100 428 TIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGV-KKMGEIHLAVRFT 494 (773)
Q Consensus 428 ~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~-~~~G~v~l~~~~~ 494 (773)
.|+|||.+.+. .+|++||++.++|+.+..+.....|++|.. |. ...|.++++++..
T Consensus 81 ~~~V~d~~~f~-------~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~----~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 81 KFEVYHKGGFL-------RSDKLLGTAQVKLEPLETKCEIHESVDLMD----GRKATGGKLEVKVRLR 137 (155)
T ss_pred EEEEEeCCCcc-------cCCCeeEEEEEEcccccccCcceEEEEhhh----CCCCcCCEEEEEEEec
Confidence 99999998752 169999999999999988777788999963 22 2358999999873
No 138
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.64 E-value=1.1e-15 Score=140.26 Aligned_cols=100 Identities=27% Similarity=0.359 Sum_probs=84.6
Q ss_pred CcceeeeecccCceeEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEec--
Q 004100 24 GDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDV--TGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD-- 94 (773)
Q Consensus 24 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~--~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~-- 94 (773)
...+++.|. +..+.|.|+|++|+||...+. .+.+||||++++.. .++||++++++.||+|||+|.|.+.
T Consensus 3 el~~sL~Y~--~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~ 80 (138)
T cd08407 3 EVLLSISYL--PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE 80 (138)
T ss_pred EEEEEEEEe--CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence 345666666 666799999999999999873 35589999999875 2568999999999999999999984
Q ss_pred CCCCceEEEEEEeCCCC-CCeeeEEEEEEcCc
Q 004100 95 RIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNE 125 (773)
Q Consensus 95 ~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~ 125 (773)
++....|.|+|||.|.+ ++++||.+.+.+..
T Consensus 81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred HhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 45577899999999998 99999999999864
No 139
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.64 E-value=3.4e-15 Score=136.06 Aligned_cols=106 Identities=16% Similarity=0.225 Sum_probs=90.5
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC---CeeeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEE
Q 004100 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVF 432 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~ 432 (773)
+..+.|.|.|++|+||+.++. ..+.+||||++.+. ....+|+++++++||.|||.|.|.+... ...|.|+||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~--~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTK--DVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred CCCCEEEEEEEEecCCCCccC--CCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 444799999999999998731 35789999999983 3557999999999999999999998753 468999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004100 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
|.+..+ ++++||++.++|+++........|++|.
T Consensus 89 d~~~~~--------~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 89 DVDRFS--------RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred ECCcCC--------CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 998765 7899999999999998888788999983
No 140
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.63 E-value=1.8e-15 Score=138.31 Aligned_cols=113 Identities=26% Similarity=0.315 Sum_probs=94.7
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-eeeeeeecc-CCCCCccccEEEEEEeCC-----CceEEEEEEeCC
Q 004100 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTII-DSPTPKWNEQYTWEVFDP-----CTVITIGVFDNC 435 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-~~~~T~~~~-~t~~P~wne~~~f~v~~~-----~~~l~v~v~d~~ 435 (773)
.|+|.|++|++|+.. +..+.+||||++++++ +..+|+++. ++.||.|||.|.|.+.++ ...|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~---~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 1 TLEITIISAEDLKNV---NLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred CEEEEEEEcccCCCC---CcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 378999999999976 4457899999999988 889999986 589999999999999877 689999999998
Q ss_pred CCCCCCCCCCCCCCccEEEEEecCccccCCe-----EEeeEEeEeecCCCcccccEEEE
Q 004100 436 HLHGGDKAGGARDSRIGKVRIRLSTLETDRV-----YTHSYPLLVLYPNGVKKMGEIHL 489 (773)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~v~l 489 (773)
.++ +|++||.+.|++.++..+.. ...||+|.... | +..|.|++
T Consensus 78 ~~~--------~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g-~~~G~~~~ 125 (125)
T cd04051 78 PSL--------GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--G-KPQGVLNF 125 (125)
T ss_pred CCC--------CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--C-CcCeEEeC
Confidence 765 78999999999999976554 46899997633 3 34587763
No 141
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.63 E-value=5.5e-15 Score=134.56 Aligned_cols=118 Identities=27% Similarity=0.338 Sum_probs=96.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004100 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (773)
.|.|+|++|+ |...+..+.+||||+++++++ ..+|++++++.||.|||+|.|.+.+ .+.|.|+|||.+.. ++++|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEE
Confidence 6999999998 555555788999999999987 8999999999999999999999864 57899999999998 99999
Q ss_pred EEEEEEcCccCCCCCCCCCCcCeEEEeeeCC--CCceeeEEEEEE
Q 004100 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK--GDKVRGELMLAV 159 (773)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l~~ 159 (773)
|++.++|.++.............|++|.... +....|+|.+.+
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999999865432222233589998665 235679988764
No 142
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.63 E-value=2.4e-15 Score=137.15 Aligned_cols=103 Identities=25% Similarity=0.420 Sum_probs=91.9
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccC-CCCCccccEEEEEEeCC----CceEEEEEEeCCC
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIID-SPTPKWNEQYTWEVFDP----CTVITIGVFDNCH 436 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~wne~~~f~v~~~----~~~l~v~v~d~~~ 436 (773)
|.|+|.|++|+||+.. +..+.+||||++.+++...+|+++.+ +.||.|||.|.|.+..+ ...|.|+|||.+.
T Consensus 1 g~L~V~V~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDT---DFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCC---CCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6899999999999987 44578999999999999999999885 89999999999999986 5789999999988
Q ss_pred CCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004100 437 LHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 437 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
++ +|++||++.++++++..+.....|++|..
T Consensus 78 ~~--------~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FS--------DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CC--------CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 75 78999999999999988777789999854
No 143
>PLN03008 Phospholipase D delta
Probab=99.63 E-value=1.9e-15 Score=170.03 Aligned_cols=107 Identities=21% Similarity=0.324 Sum_probs=94.7
Q ss_pred CCCCCcEEEEEECCe-eeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCcc
Q 004100 383 RGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461 (773)
Q Consensus 383 ~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l 461 (773)
.+++||||+|.++++ ..||+++++++||+|||+|.|.+.++...|++.|+|+|.++ +++||.+.|++.++
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g---------aD~IG~a~IPL~~L 144 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG---------AQIIGTAKIPVRDI 144 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC---------CceeEEEEEEHHHc
Confidence 357899999999876 46999999999999999999999999889999999999985 58999999999999
Q ss_pred ccCCeEEeeEEeEeecCCCcccccEEEEEEEEeecch
Q 004100 462 ETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSSL 498 (773)
Q Consensus 462 ~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~~~~ 498 (773)
..|...+.|++|.....+..+..|+|+++++|.|...
T Consensus 145 ~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~ 181 (868)
T PLN03008 145 ASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQ 181 (868)
T ss_pred CCCCceEEEEEccccCCCCCCCCcEEEEEEEEEEccc
Confidence 9999999999998765544445689999999988754
No 144
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.62 E-value=9.9e-16 Score=141.99 Aligned_cols=117 Identities=28% Similarity=0.413 Sum_probs=96.1
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC--
Q 004100 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR-- 95 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~-- 95 (773)
|...++++|+ ...+.|.|+|++|+||+..+..|.+||||++.+.+ .+.+|++++++.||.|||+|.|.+..
T Consensus 2 G~l~~~l~y~--~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~ 79 (136)
T cd08404 2 GELLLSLCYQ--PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEE 79 (136)
T ss_pred CeEEEEEEEe--CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHH
Confidence 3456777776 45568999999999999999889999999999853 25789999999999999999999853
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004100 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
.....|.|+|||++.+ ++++||++.+++.. . . ....+|++|.+..+
T Consensus 80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~-~-~-----~~~~~w~~l~~~~~ 126 (136)
T cd08404 80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKA-S-G-----SGGHHWKEVCNPPR 126 (136)
T ss_pred hCCCEEEEEEEECCCCCCCccEEEEEECCcC-C-C-----chHHHHHHHHhCCC
Confidence 3456799999999998 89999999999987 2 1 23578998877654
No 145
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.62 E-value=7.7e-15 Score=134.55 Aligned_cols=116 Identities=27% Similarity=0.392 Sum_probs=95.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eeeeeeccCCCCCCee-ecEEEEEecCCCCceEEEE
Q 004100 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-------------YKGTTRHFEKKTNPEW-NQVFAFSKDRIQSSVLEVT 104 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-------------~~~~T~~~~~~~nP~W-nE~f~f~v~~~~~~~l~i~ 104 (773)
+..|++++|+||+ .+..|++||||++.+.+ ++++|++++++.||+| ||+|.|.+.. .+.|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4679999999998 66789999999999953 3689999999999999 9999999853 5689999
Q ss_pred EEeCCCC----CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC-CCceeeEEEEEE
Q 004100 105 VKDKDFV----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELMLAV 159 (773)
Q Consensus 105 V~d~~~~----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~~ 159 (773)
|||++.. .+++||++.+++.++..+.. ......||+|.... .....|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~--~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHA--IGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhccccc--CCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9997653 27999999999999986532 23367899998765 335789998865
No 146
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.62 E-value=2.1e-15 Score=139.34 Aligned_cols=102 Identities=31% Similarity=0.549 Sum_probs=90.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeeeeeeccCCCCCCeeecEEEEEecCC---------------CCce
Q 004100 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMG----NYKGTTRHFEKKTNPEWNQVFAFSKDRI---------------QSSV 100 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~----~~~~~T~~~~~~~nP~WnE~f~f~v~~~---------------~~~~ 100 (773)
|+|+|++|+||+.. ..+.+||||+++++ .++++|+++.++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 77899999999998 6789999999999999999999998654 4578
Q ss_pred EEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004100 101 LEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 101 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
|.|+|||.+.. ++++||++.+++.++.... ....||+|....
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAG-----SHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCC-----cccceEecCCcC
Confidence 99999999988 9999999999999987432 357899999875
No 147
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=2.8e-15 Score=135.20 Aligned_cols=103 Identities=30% Similarity=0.363 Sum_probs=91.3
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-eeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG 440 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~ 440 (773)
|.|+|.|++|+||+.. +..+.+||||++.+++ ...+|+++.++.||.|||.|.|++..+...|.|+|||++..+
T Consensus 1 g~L~V~Vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~-- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNL---EGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG-- 75 (120)
T ss_pred CeEEEEEEeeECCCCc---cCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence 6899999999999987 4458899999999977 468999999999999999999999888889999999998875
Q ss_pred CCCCCCCCCccEEEEEecCccccCCeEEeeEEeEee
Q 004100 441 DKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476 (773)
Q Consensus 441 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 476 (773)
+|++||++.+++.++..+ ....||-|.+.
T Consensus 76 ------~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 76 ------KDRSLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred ------CCCeeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 789999999999999776 55789988763
No 148
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.62 E-value=9e-15 Score=133.85 Aligned_cols=118 Identities=22% Similarity=0.392 Sum_probs=99.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---EEEEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCC
Q 004100 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN---QALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKD 277 (773)
Q Consensus 201 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d 277 (773)
.++|+|++|++|+..+..+.+||||++.+++ +..+|+++++ +.||.|||+|.|.+.......|.|+|||++..+++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 5899999999999999889999999999864 4679999876 99999999999999876567899999999988899
Q ss_pred ceeEEEEEeccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEcc
Q 004100 278 EVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEG 334 (773)
Q Consensus 278 ~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~~ 334 (773)
++||++.++|+.+... .+......|++|.+ .|++++.+++.+
T Consensus 81 ~~iG~~~i~l~~~~~~-~~~~~~~~w~~l~~--------------~g~i~l~~~~~~ 122 (126)
T cd04043 81 DLCGRASLKLDPKRFG-DDGLPREIWLDLDT--------------QGRLLLRVSMEG 122 (126)
T ss_pred ceEEEEEEecCHHHcC-CCCCCceEEEEcCC--------------CCeEEEEEEEee
Confidence 9999999999976432 11344678999975 478888888654
No 149
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.61 E-value=3.1e-16 Score=159.84 Aligned_cols=104 Identities=34% Similarity=0.589 Sum_probs=93.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC-CCCceEEEEEEeCCCC
Q 004100 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR-IQSSVLEVTVKDKDFV 111 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~-~~~~~l~i~V~d~~~~ 111 (773)
..|.|+|.+|+||.++|.+|.+||||++++-+ .+++|++++.++||+|||+|.|.+.. -....|.|+|||.|+.
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccccc
Confidence 48999999999999999999999999999964 46899999999999999999999843 2467899999999999
Q ss_pred -CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004100 112 -KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 112 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
++||||+.++.+++|.+.+ ...||.|.+++
T Consensus 260 sRNDFMGslSFgisEl~K~p------~~GWyKlLsqe 290 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKAP------VDGWYKLLSQE 290 (683)
T ss_pred ccccccceecccHHHHhhcc------hhhHHHHhhhh
Confidence 9999999999999999753 57899998875
No 150
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.61 E-value=1.3e-15 Score=140.74 Aligned_cols=116 Identities=22% Similarity=0.395 Sum_probs=92.2
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEec--CCC
Q 004100 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--RIQ 97 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~--~~~ 97 (773)
..+++.|. +..+.|.|+|++|+||+..+..|.+||||++.+.+ .+++|++++++.||+|||+|.|.+. +..
T Consensus 3 i~~~l~y~--~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~ 80 (135)
T cd08410 3 LLLSLNYL--PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE 80 (135)
T ss_pred EEEEEEEC--CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence 35566665 56679999999999999999889999999999832 3578999999999999999999984 334
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004100 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
...|.|+|||++.. ++++||++.+....... ....+|+.|....+
T Consensus 81 ~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~------~~~~~W~~l~~~~~ 126 (135)
T cd08410 81 NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP------SETNHWRRMLNSQR 126 (135)
T ss_pred CCEEEEEEEeCCCCCCCcEEEEEEEcCccCCc------hHHHHHHHHHhCCC
Confidence 55799999999988 99999999876533321 12467888877654
No 151
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.61 E-value=5.3e-15 Score=136.32 Aligned_cols=114 Identities=33% Similarity=0.524 Sum_probs=97.2
Q ss_pred CcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecCC-C
Q 004100 24 GDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRI-Q 97 (773)
Q Consensus 24 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~~-~ 97 (773)
...++.+|.. +.|+|+|++|+||+..+..+.+||||++.+.+ .+++|+++.++.||.|||+|.|.+... .
T Consensus 3 ~~~~~~~~~~----~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~ 78 (131)
T cd04026 3 RIYLKISVKD----NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADK 78 (131)
T ss_pred EEEEEEEECC----CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhc
Confidence 3456666654 68999999999999988888999999999963 578999999999999999999998643 3
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004100 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
...|.|+|||++.. ++++||.+.+++.++... ....||+|.+.+
T Consensus 79 ~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~------~~~~w~~L~~~~ 123 (131)
T cd04026 79 DRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM------PVDGWYKLLNQE 123 (131)
T ss_pred CCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC------ccCceEECcCcc
Confidence 56899999999987 899999999999999854 257899998875
No 152
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.61 E-value=6.2e-15 Score=132.89 Aligned_cols=93 Identities=17% Similarity=0.270 Sum_probs=76.5
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeecccCCC-CCccccceEEEEeeCCC-CCeEEEEEE
Q 004100 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-----QALRTRVSASRT-INPMWNEDLMFVAAEPF-EEHLILTVE 269 (773)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t-~nP~wne~f~f~~~~~~-~~~l~i~V~ 269 (773)
|..++|+|+|++|+||+.++..+.+||||++.+.. .+.||+++++ | .||.|||+|.|++.... +-.|.++||
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchhheeEEEEEEE
Confidence 34468999999999999886667789999998842 4678888776 7 46999999999997543 236888899
Q ss_pred EccCCCCCceeEEEEEecccc
Q 004100 270 DRVAPNKDEVLGKCMIPLQYV 290 (773)
Q Consensus 270 d~~~~~~d~~iG~~~i~L~~l 290 (773)
|++..+++++||++.++.+..
T Consensus 90 d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 90 SRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eCCCCcCCceEEEEEECCccC
Confidence 998888999999999999764
No 153
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.61 E-value=6.1e-15 Score=136.77 Aligned_cols=117 Identities=26% Similarity=0.447 Sum_probs=94.3
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeeccCCCCCCeeecEEEEEec--C
Q 004100 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG--N---YKGTTRHFEKKTNPEWNQVFAFSKD--R 95 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~--~---~~~~T~~~~~~~nP~WnE~f~f~v~--~ 95 (773)
|...+++.|+ +..+.|.|+|++|+||+..+..+.+||||++++. + .+.+|++++++.||.|||+|.|.+. .
T Consensus 2 G~l~~sl~y~--~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~ 79 (136)
T cd08405 2 GELLLSLCYN--PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLER 79 (136)
T ss_pred cEEEEEEEEc--CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHH
Confidence 3456677776 5567999999999999998888999999999983 2 3578999999999999999999974 3
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004100 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
.....|.|+|||.+.+ ++++||++.+++.+... ...+|++|....+
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~-------~~~~w~~~~~~~~ 126 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGL-------ELKHWKDMLSKPR 126 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccCCc-------hHHHHHHHHhCCC
Confidence 3456899999999988 89999999999987521 2456766665543
No 154
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.61 E-value=1.5e-14 Score=134.48 Aligned_cols=118 Identities=20% Similarity=0.324 Sum_probs=94.5
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE--C---CeeeeeeccCCCCCCeeecEEEEEecCC--------CCceEEEE
Q 004100 40 LYVRVVKAKD--LPPKDVTGSCDPYVEVKM--G---NYKGTTRHFEKKTNPEWNQVFAFSKDRI--------QSSVLEVT 104 (773)
Q Consensus 40 L~V~v~~a~~--L~~~d~~~~~dpyv~v~~--~---~~~~~T~~~~~~~nP~WnE~f~f~v~~~--------~~~~l~i~ 104 (773)
..++|+.|++ |+..+..+.+||||++.+ . .++.||+++++|.||+|||+|.|.+... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4566777777 677777788999999997 2 3689999999999999999999998532 25679999
Q ss_pred EEeCCCC--CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEec
Q 004100 105 VKDKDFV--KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 105 V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
|||.+.+ +|++||++.++|..+..+. ....|++|.+.. ....|.|.+.+....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~-----~~~~~~~L~~~~-k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKC-----EIHESVDLMDGR-KATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccC-----cceEEEEhhhCC-CCcCCEEEEEEEecC
Confidence 9999986 7999999999999997653 245699998632 234689999987764
No 155
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.61 E-value=1.7e-15 Score=139.94 Aligned_cols=116 Identities=22% Similarity=0.371 Sum_probs=93.7
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeccCCCCCCeeecEEEEEec--CC
Q 004100 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN------YKGTTRHFEKKTNPEWNQVFAFSKD--RI 96 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~------~~~~T~~~~~~~nP~WnE~f~f~v~--~~ 96 (773)
..+++.|+ ...+.|.|+|++|+||+..+..|.+||||++.+.+ .+++|++++++.||+|||+|.|.+. ++
T Consensus 4 i~~sL~Y~--~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l 81 (138)
T cd08408 4 LLLGLEYN--ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL 81 (138)
T ss_pred EEEEeEEc--CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence 34555565 66679999999999999998889999999999953 2568999999999999999999985 45
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004100 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
....|.|.|||.+.. ++++||++.+++...-.. ...+|+.+....+
T Consensus 82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~------~~~hW~~~l~~~~ 128 (138)
T cd08408 82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEE------EEEHWNEMKESKG 128 (138)
T ss_pred CccEEEEEEEECCCCCCCcEEEEEEECCcCCCch------HHHHHHHHHhCCC
Confidence 667999999999988 999999999987643311 2357887766544
No 156
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.60 E-value=3.3e-15 Score=135.80 Aligned_cols=90 Identities=31% Similarity=0.583 Sum_probs=81.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004100 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYK--GTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~--~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (773)
+|+|+|++|++|+..+..+.+||||++++++++ .+|++++++.||+|||+|.|.+..+....|.|+|||++.. +|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 479999999999999988999999999999864 5788888999999999999998666678999999999998 9999
Q ss_pred eEEEEEEcCccCC
Q 004100 116 MGRVLFDLNEIPK 128 (773)
Q Consensus 116 lG~~~i~l~~l~~ 128 (773)
||++.+++.+...
T Consensus 81 iG~~~i~l~~~~~ 93 (124)
T cd04037 81 IGETVIDLEDRFF 93 (124)
T ss_pred eEEEEEeeccccc
Confidence 9999999998774
No 157
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.60 E-value=1.9e-15 Score=140.15 Aligned_cols=115 Identities=30% Similarity=0.384 Sum_probs=93.2
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC--CC
Q 004100 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQ 97 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~--~~ 97 (773)
..+++.|. +..+.|.|+|++|++|+..+..+.+||||++.+.+ .+++|++++++.||.|||+|.|.+.. ..
T Consensus 4 l~~~l~y~--~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~ 81 (136)
T cd08402 4 ICFSLRYV--PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQ 81 (136)
T ss_pred EEEEeEEc--CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhC
Confidence 34555555 66789999999999999998889999999999953 35789999999999999999999853 33
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004100 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
...|.|+|||.+.. ++++||++.+++.... ....+|+++....+
T Consensus 82 ~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~-------~~~~~W~~~~~~~~ 126 (136)
T cd08402 82 KVHLIVTVLDYDRIGKNDPIGKVVLGCNATG-------AELRHWSDMLASPR 126 (136)
T ss_pred CCEEEEEEEeCCCCCCCceeEEEEECCccCC-------hHHHHHHHHHhCCC
Confidence 45899999999988 8999999999997532 22467887766543
No 158
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.60 E-value=7e-15 Score=132.29 Aligned_cols=112 Identities=30% Similarity=0.473 Sum_probs=95.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeeeE
Q 004100 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMG 117 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG 117 (773)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+.+.....+.|+|||++.. ++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999988888999999999987 457999999999999999999999765678899999999988 899999
Q ss_pred EEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEE
Q 004100 118 RVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELML 157 (773)
Q Consensus 118 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l 157 (773)
++.+++.++..+. ....|++|....+ ...|.+.+
T Consensus 81 ~~~~~l~~l~~~~-----~~~~~~~L~~~g~-~~~~~~~~ 114 (115)
T cd04040 81 SAYIDLSDLEPEE-----TTELTLPLDGQGG-GKLGAVFL 114 (115)
T ss_pred EEEEEHHHcCCCC-----cEEEEEECcCCCC-ccCceEEc
Confidence 9999999987642 3578999987543 34566643
No 159
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.60 E-value=8.1e-15 Score=131.85 Aligned_cols=111 Identities=27% Similarity=0.415 Sum_probs=94.3
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-eeeeeeeccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCCCCCC
Q 004100 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~~~~~~ 441 (773)
|+|.|++|++|+.. +..+.+||||++.+++ ...+|+++.++.+|.|||.|.|.+.+ ....+.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~--- 74 (115)
T cd04040 1 LTVDVISAENLPSA---DRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG--- 74 (115)
T ss_pred CEEEEEeeeCCCCC---CCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence 57899999999987 4457899999999976 45799999999999999999999987 4789999999998765
Q ss_pred CCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEE
Q 004100 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIH 488 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~ 488 (773)
++++||++.+++.++..+.....|++|.. +|..+.|.+.
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~~~~L~~---~g~~~~~~~~ 113 (115)
T cd04040 75 -----KDDLLGSAYIDLSDLEPEETTELTLPLDG---QGGGKLGAVF 113 (115)
T ss_pred -----CCCceEEEEEEHHHcCCCCcEEEEEECcC---CCCccCceEE
Confidence 78999999999999998888899999964 3434456654
No 160
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.60 E-value=6e-15 Score=136.46 Aligned_cols=116 Identities=21% Similarity=0.357 Sum_probs=92.9
Q ss_pred CcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEec--CC
Q 004100 24 GDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--RI 96 (773)
Q Consensus 24 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~--~~ 96 (773)
...+++.|+ +..+.|.|+|++|+||+..+ .+.+||||++.+.+ .+++|++++++.||+|||+|.|.+. ++
T Consensus 3 ~i~~sl~y~--~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l 79 (137)
T cd08409 3 DIQISLTYN--PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQL 79 (137)
T ss_pred EEEEEEEEC--CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHh
Confidence 345666666 55679999999999999888 78899999999864 3668999999999999999999984 45
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004100 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
....|.|+|||.+.. ++++||++.+.......+. ...+|..+....
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~-----~~~hW~~~~~~p 126 (137)
T cd08409 80 DTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGK-----ELEHWNDMLSKP 126 (137)
T ss_pred CccEEEEEEEeCCCCCCcceEEEEEECCcccCCCh-----HHHHHHHHHhCC
Confidence 567899999999987 9999999999865554331 245676666543
No 161
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.59 E-value=5.2e-15 Score=136.65 Aligned_cols=103 Identities=19% Similarity=0.298 Sum_probs=90.1
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEEC----CeeeeeeeccCCCCCccccEEEEEEeCC----------------
Q 004100 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYG----QKWVRTRTIIDSPTPKWNEQYTWEVFDP---------------- 423 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~----~~~~~T~~~~~t~~P~wne~~~f~v~~~---------------- 423 (773)
|.|.|++|+||+.+ . .|.+||||++.++ +...+|+++.++.||.|||.|.|.+...
T Consensus 1 L~V~Vi~A~~L~~~-~---~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~ 76 (137)
T cd08675 1 LSVRVLECRDLALK-S---NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLE 76 (137)
T ss_pred CEEEEEEccCCCcc-c---CCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccc
Confidence 57899999999875 2 3689999999998 7789999999999999999999998864
Q ss_pred CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecC
Q 004100 424 CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYP 478 (773)
Q Consensus 424 ~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 478 (773)
...|.|+|||++..+ ++++||++.+++.++........||+|.....
T Consensus 77 ~~~l~i~V~d~~~~~--------~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~ 123 (137)
T cd08675 77 KSELRVELWHASMVS--------GDDFLGEVRIPLQGLQQAGSHQAWYFLQPREA 123 (137)
T ss_pred ccEEEEEEEcCCcCc--------CCcEEEEEEEehhhccCCCcccceEecCCcCC
Confidence 468999999998765 78999999999999987777899999976543
No 162
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.59 E-value=1.3e-14 Score=130.99 Aligned_cols=112 Identities=29% Similarity=0.487 Sum_probs=88.0
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-eeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCC
Q 004100 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHG 439 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~ 439 (773)
|+|.|++|+||+.. +.+||||+++++++ +.+|+++++ .||.|||+|.|.+... ...|.|.+||.+..+
T Consensus 2 L~v~vi~a~~l~~~------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~- 73 (117)
T cd08383 2 LRLRILEAKNLPSK------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD- 73 (117)
T ss_pred eEEEEEEecCCCcC------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence 78999999999853 67999999999885 479999999 9999999999999863 457788888876543
Q ss_pred CCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004100 440 GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 440 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
++..+|++.|. .+..+.....||+|...+..+ +..|+|+|+++|
T Consensus 74 -------~~~~~g~v~l~--~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 74 -------RDIVIGKVALS--KLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred -------CeeEEEEEEec--CcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 56667766554 454566778999997654422 457999999875
No 163
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.59 E-value=1.1e-14 Score=134.21 Aligned_cols=92 Identities=21% Similarity=0.298 Sum_probs=80.5
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-------CeeeeeeeccCCCCCccccEEEEEEeCC-----CceEE
Q 004100 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-------QKWVRTRTIIDSPTPKWNEQYTWEVFDP-----CTVIT 428 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-------~~~~~T~~~~~t~~P~wne~~~f~v~~~-----~~~l~ 428 (773)
.+.|.|.|++|++|+.+ +..+.+||||+|.+. ....||+++++++||+|||.|.|++... ...|.
T Consensus 15 ~~~L~V~Vi~A~~L~~~---~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~ 91 (133)
T cd04009 15 EQSLRVEILNARNLLPL---DSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLL 91 (133)
T ss_pred CCEEEEEEEEeeCCCCc---CCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEE
Confidence 47899999999999987 445789999999985 3468999999999999999999998752 46899
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEecCcccc
Q 004100 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET 463 (773)
Q Consensus 429 v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 463 (773)
|+|||++.++ +|++||++.++|+++..
T Consensus 92 ~~V~d~d~~~--------~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 92 FTVKDYDLLG--------SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEecCCCC--------CCcEeEEEEEeHHHCCc
Confidence 9999999875 79999999999999863
No 164
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.59 E-value=1e-14 Score=134.39 Aligned_cols=102 Identities=27% Similarity=0.401 Sum_probs=89.0
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCC--CceEEEEEEeC
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITIGVFDN 434 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v~v~d~ 434 (773)
+.|+|.|++|+||+.. +..+.+||||++.+.+ ...+|++++++.||.|||+|.|.+... ...|.|+|||+
T Consensus 13 ~~l~v~i~~a~nL~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~ 89 (131)
T cd04026 13 NKLTVEVREAKNLIPM---DPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDW 89 (131)
T ss_pred CEEEEEEEEeeCCCCc---CCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEEC
Confidence 7899999999999876 4457899999999953 568999999999999999999998764 56899999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004100 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
+..+ ++++||++.++++++... ....||+|.+
T Consensus 90 ~~~~--------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 90 DRTT--------RNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCCC--------CcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8765 789999999999999754 5678999976
No 165
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.59 E-value=1.5e-14 Score=134.17 Aligned_cols=105 Identities=25% Similarity=0.301 Sum_probs=87.4
Q ss_pred cCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--C---eeeeeeeccCCCCCccccEEEEEEeCC---CceEEE
Q 004100 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITI 429 (773)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v 429 (773)
.++.|.|.|.|++|+||+.+ +..|.+||||++.++ + ...+|+++++++||.|||.|.|++... ...|.|
T Consensus 11 ~~~~~~l~V~Vi~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~ 87 (136)
T cd08402 11 VPTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIV 87 (136)
T ss_pred cCCCCeEEEEEEEeeCCCcc---cCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 45568999999999999987 456889999999984 2 346899999999999999999998643 348999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004100 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 430 ~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
+|||++.++ +|++||++.|++... +....+|+++..
T Consensus 88 ~v~d~~~~~--------~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 88 TVLDYDRIG--------KNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EEEeCCCCC--------CCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 999999876 789999999999864 445678888754
No 166
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.59 E-value=4.3e-15 Score=137.70 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=86.0
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--Ce---eeeeeeccCCCCCccccEEEEEEeC---CCceEEEEEE
Q 004100 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--QK---WVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVF 432 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~~---~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~ 432 (773)
.+.|.|.|++|+||+.. +..|.+||||++.+. ++ ..||+++++++||.|||+|.|.+.. ....|.|+||
T Consensus 14 ~~~L~V~vi~a~~L~~~---d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 14 TNRLTVVVLKARHLPKM---DVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred CCeEEEEEEEeeCCCcc---ccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 47899999999999987 455889999999983 32 4689999999999999999999874 3567999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004100 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
|+|.++ ++++||++.+++.. .+....+|++|..
T Consensus 91 d~d~~~--------~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 91 DSDRVT--------KNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred ECCCCC--------CCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 999876 78999999999998 3455678888854
No 167
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.58 E-value=4.2e-15 Score=137.50 Aligned_cols=115 Identities=23% Similarity=0.338 Sum_probs=92.7
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecC--CC
Q 004100 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQ 97 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~--~~ 97 (773)
..+++.|. +..+.|+|+|++|++|+..+..|.+||||++++.+ .+++|++++++.||.|||+|.|.+.. ..
T Consensus 3 l~~~~~y~--~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~ 80 (134)
T cd08403 3 LMFSLCYL--PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVD 80 (134)
T ss_pred EEEEEEEc--CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhC
Confidence 45666666 56689999999999999999889999999999842 35789999999999999999999843 33
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004100 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
...|.|+|||++.. ++++||++.+++.... .....|+++....+
T Consensus 81 ~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~-------~~~~~w~~~~~~~~ 125 (134)
T cd08403 81 NVSLIIAVVDYDRVGHNELIGVCRVGPNADG-------QGREHWNEMLANPR 125 (134)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEECCCCCC-------chHHHHHHHHHCCC
Confidence 45799999999988 8999999999876221 12457777766544
No 168
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.58 E-value=1.4e-14 Score=130.68 Aligned_cols=114 Identities=17% Similarity=0.303 Sum_probs=87.9
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCC-CCeeecEEEEEecCC-CCc
Q 004100 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKT-NPEWNQVFAFSKDRI-QSS 99 (773)
Q Consensus 27 ~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~-nP~WnE~f~f~v~~~-~~~ 99 (773)
+.++.-+.+..+.|.|+|++|+||++.+..+.+||||+|.+-. .++||++++++. ||+|||+|.|++... ..-
T Consensus 3 l~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v 82 (135)
T cd08692 3 LQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGI 82 (135)
T ss_pred EEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhhee
Confidence 4445555588889999999999999875566789999999843 478899999985 699999999999532 345
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeC
Q 004100 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (773)
.|.|+|||.+.. ++++||.+.+........ ...+|.++...
T Consensus 83 ~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~------~~~hW~~m~~~ 124 (135)
T cd08692 83 QFLIKLYSRSSVRRKHFLGQVWISSDSSSSE------AVEQWKDTIAN 124 (135)
T ss_pred EEEEEEEeCCCCcCCceEEEEEECCccCCch------hhhhHHHHHhC
Confidence 788899999887 999999999998753211 13466665443
No 169
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.58 E-value=1.6e-15 Score=154.77 Aligned_cols=103 Identities=26% Similarity=0.466 Sum_probs=91.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeecccCCCCCccccceEEEEeeCC-CCCeEEEEEEEccCC
Q 004100 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLG-----NQALRTRVSASRTINPMWNEDLMFVAAEP-FEEHLILTVEDRVAP 274 (773)
Q Consensus 201 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~kT~~~~~~t~nP~wne~f~f~~~~~-~~~~l~i~V~d~~~~ 274 (773)
.|+|+|.+|+||.++|.+|.+||||++++- ..++||++++. ++||+|||+|+|.+... .+.+|.|+|||||..
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEecccccccceeEEEEeccccc
Confidence 699999999999999999999999999994 25789999987 99999999999998654 356899999999999
Q ss_pred CCCceeEEEEEeccccccccCCCCCCceEEEcccC
Q 004100 275 NKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKH 309 (773)
Q Consensus 275 ~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~ 309 (773)
++++++|+.++.+++|.. ...+.||.|...
T Consensus 260 sRNDFMGslSFgisEl~K-----~p~~GWyKlLsq 289 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQK-----APVDGWYKLLSQ 289 (683)
T ss_pred ccccccceecccHHHHhh-----cchhhHHHHhhh
Confidence 999999999999999984 347889988765
No 170
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.58 E-value=2.1e-14 Score=132.59 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=83.6
Q ss_pred cCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CC---eeeeeeeccCCCCCccccEEEEEEeCC---CceEEE
Q 004100 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITI 429 (773)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v 429 (773)
.+..|.|.|.|++|++|+.+ +..|.+||||++.+ ++ ...+|++++++.||.|||.|.|.+... ...|.|
T Consensus 10 ~~~~~~L~V~vi~a~~L~~~---d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~ 86 (135)
T cd08410 10 LPSAGRLNVDIIRAKQLLQT---DMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVF 86 (135)
T ss_pred CCCCCeEEEEEEEecCCCcc---cCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEE
Confidence 34558999999999999987 44578999999997 22 347999999999999999999998642 347999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004100 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 430 ~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
+|||+|..+ ++++||++.|+...... ....+|+.|..
T Consensus 87 ~V~d~d~~~--------~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 87 TVYGHNVKS--------SNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred EEEeCCCCC--------CCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 999998765 89999999877644332 22466777754
No 171
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.58 E-value=5.1e-15 Score=137.21 Aligned_cols=116 Identities=29% Similarity=0.434 Sum_probs=96.7
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeeeeccCCCCCCeeecEEEEEecCC--C
Q 004100 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-----KGTTRHFEKKTNPEWNQVFAFSKDRI--Q 97 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~-----~~~T~~~~~~~nP~WnE~f~f~v~~~--~ 97 (773)
..++..|+ +..+.|.|+|++|+||+..+..+.+||||++++.+. +++|+++.++.||.|||+|.|.+... .
T Consensus 3 i~~~l~y~--~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~ 80 (134)
T cd00276 3 LLLSLSYL--PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLE 80 (134)
T ss_pred EEEEEEee--CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhC
Confidence 45666676 445699999999999999888889999999999652 57899999999999999999998643 3
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCC
Q 004100 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD 149 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 149 (773)
...|.|+|||.+.. ++++||.+.+++.+ . .....+|++|.+..++
T Consensus 81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~-~------~~~~~~W~~l~~~~~~ 126 (134)
T cd00276 81 EVSLVITVVDKDSVGRNEVIGQVVLGPDS-G------GEELEHWNEMLASPRK 126 (134)
T ss_pred CcEEEEEEEecCCCCCCceeEEEEECCCC-C------CcHHHHHHHHHhCCCC
Confidence 57899999999987 89999999999998 2 2235789999887543
No 172
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.58 E-value=2.6e-14 Score=129.05 Aligned_cols=111 Identities=29% Similarity=0.487 Sum_probs=87.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCC--CCceEEEEEEeCCCC-CCee
Q 004100 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRI--QSSVLEVTVKDKDFV-KDDF 115 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~--~~~~l~i~V~d~~~~-~d~~ 115 (773)
|.|+|++|+||+.. +.+||||+++++++ .++|+++++ .||.|||+|.|.+... ....|.|.+||.+.. ++..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999876 78999999999985 479999988 9999999999998642 245678888988766 6677
Q ss_pred eEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC-CceeeEEEEEEEE
Q 004100 116 MGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG-DKVRGELMLAVWM 161 (773)
Q Consensus 116 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~~~~ 161 (773)
+|.+.++.... + .....||+|....+ ....|+|++.++|
T Consensus 78 ~g~v~l~~~~~--~-----~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALSKLDL--G-----QGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEecCcCC--C-----CcceeEEECccCCCCCCcCceEEEEEEC
Confidence 77766554333 2 23579999987653 3457999998864
No 173
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.58 E-value=1.6e-14 Score=134.68 Aligned_cols=102 Identities=30% Similarity=0.503 Sum_probs=88.4
Q ss_pred ccCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------EEEEeecccCCCCC
Q 004100 195 LSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-----------------------------QALRTRVSASRTIN 245 (773)
Q Consensus 195 ~~p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----------------------------~~~kT~~~~~~t~n 245 (773)
..|..+.|+|+|++|++|..+|.+|.+||||++.++. +.++|+++++ +.|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tln 101 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLN 101 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCC
Confidence 3577899999999999999999999999999999963 2367888776 999
Q ss_pred ccccceEEEEeeCCCCCeEEEEEEEccCCCCCceeEEEEEeccccccccCCCCCCceEEEc
Q 004100 246 PMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNL 306 (773)
Q Consensus 246 P~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L 306 (773)
|.|||+|.|.+.+.....|.|+|||++ +++||++.++++++.. .....||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-----~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-----CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-----CCCCCeEeC
Confidence 999999999997766778999999986 8899999999999872 236899986
No 174
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.1e-15 Score=151.65 Aligned_cols=225 Identities=21% Similarity=0.309 Sum_probs=172.0
Q ss_pred cceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEe--c-CC
Q 004100 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSK--D-RI 96 (773)
Q Consensus 25 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v--~-~~ 96 (773)
.++...|+-+.. .+..+|..|++|++++..+..|||++..+.. .+.+|++..++.||.|||+..... . +.
T Consensus 82 ~~~~~~y~~~~~--~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~ 159 (362)
T KOG1013|consen 82 LEFELLYDSESR--MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDT 159 (362)
T ss_pred hhhhhhhhhhhh--hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchh
Confidence 456666665554 7899999999999999999999999999975 468899999999999999865543 2 23
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC------CCceeeEEEEEEEEeccCCCCC
Q 004100 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK------GDKVRGELMLAVWMGTQADEAF 169 (773)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~------~~~~~G~i~l~~~~~~~~d~~~ 169 (773)
....+++.|.|.+.+ .+++.|+..+++..+..... .....|+.-..+. ..+.+|+|.+++.|.+.
T Consensus 160 ~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~---k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~----- 231 (362)
T KOG1013|consen 160 HLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQR---KSFNICLEKSLPSERADRDEDEERGAILISLAYSST----- 231 (362)
T ss_pred hhhhhheeeccCcccccccCcccchhhhhccChhhc---chhhhhhhccCCcccccccchhhccceeeeeccCcC-----
Confidence 356778899998888 88999999999888875432 2234454332221 11346777777644321
Q ss_pred CcccccccccccccccccccccceeccCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeecccCCCC
Q 004100 170 PEAWHSDAATVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-----QALRTRVSASRTI 244 (773)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~ 244 (773)
...+.|+++.|.+|..+|.++.+||||+.++.. -+.||.+.++ +.
T Consensus 232 -----------------------------~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~ 281 (362)
T KOG1013|consen 232 -----------------------------TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TL 281 (362)
T ss_pred -----------------------------CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-cC
Confidence 124889999999999999999999999999862 3567888776 99
Q ss_pred CccccceEEEEeeCC--CCCeEEEEEEEccCCCCCceeEEEEEeccc
Q 004100 245 NPMWNEDLMFVAAEP--FEEHLILTVEDRVAPNKDEVLGKCMIPLQY 289 (773)
Q Consensus 245 nP~wne~f~f~~~~~--~~~~l~i~V~d~~~~~~d~~iG~~~i~L~~ 289 (773)
+|.||+.|.|.+... ....+.|.|||++..+..+.+|-+...+..
T Consensus 282 ~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 282 NPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYR 328 (362)
T ss_pred CccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccccc
Confidence 999999999988543 355899999999888788999987665543
No 175
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.57 E-value=3.6e-14 Score=129.16 Aligned_cols=117 Identities=21% Similarity=0.315 Sum_probs=92.7
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-eeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG 440 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~ 440 (773)
..|.|+|++|+ |... +..+.+||||++.++++ ..+|++++++.||.|||.|.|.+. ....|.|+|||++..+
T Consensus 2 ~~L~V~i~~a~-l~~~---~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~-- 74 (125)
T cd04021 2 SQLQITVESAK-LKSN---SKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLK-- 74 (125)
T ss_pred ceEEEEEEeeE-CCCC---CcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCC--
Confidence 36899999998 5443 33578999999999988 899999999999999999999985 4679999999998875
Q ss_pred CCCCCCCCCccEEEEEecCccccCC---e--EEeeEEeEeecCCCcccccEEEEEE
Q 004100 441 DKAGGARDSRIGKVRIRLSTLETDR---V--YTHSYPLLVLYPNGVKKMGEIHLAV 491 (773)
Q Consensus 441 ~~~~~~~d~~lG~~~i~l~~l~~~~---~--~~~~~~L~~~~~~g~~~~G~v~l~~ 491 (773)
+|++||++.++|+++..+. . +..|+++........+..|.|.+.+
T Consensus 75 ------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ------ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred ------CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 7899999999999986432 1 3458888754421224468888765
No 176
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.57 E-value=5.7e-14 Score=129.21 Aligned_cols=115 Identities=23% Similarity=0.383 Sum_probs=95.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCC-C----
Q 004100 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDF-V---- 111 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~-~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~-~---- 111 (773)
..|.|.|++|++|++.+ +|||.+.++++. .||+++.++.||.|+|.|.|..... ...|.|.||+.+. .
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcccccc
Confidence 47999999999998765 899999999976 6999999999999999999975433 4679999976543 2
Q ss_pred CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCC---------ceeeEEEEEEEEec
Q 004100 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD---------KVRGELMLAVWMGT 163 (773)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~---------~~~G~i~l~~~~~~ 163 (773)
++.+||++.|++.++..+ ...++||+|....+. ...+.|++++.|.+
T Consensus 85 ~~~~IG~V~Ip~~~l~~~-----~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSR-----QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred CCcEEEEEEEEHHHhcCC-----CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 579999999999999854 346899999998754 23479999998875
No 177
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.56 E-value=1.5e-14 Score=128.77 Aligned_cols=101 Identities=28% Similarity=0.435 Sum_probs=86.1
Q ss_pred CCCCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeeeEEEEEEcCccCCCCCCC
Q 004100 55 VTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPD 133 (773)
Q Consensus 55 ~~~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~ 133 (773)
.+|.+||||+++++++ ..+|++++++.||+|||.|.|.+.+.....|.|+|+|.+..++++||++.++|.++...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~---- 84 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDA---- 84 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhh----
Confidence 3688999999999885 57999999999999999999999876678899999999887899999999999999654
Q ss_pred CCCcCeEEEeeeCCCCceeeEEEEEEEEec
Q 004100 134 SPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 134 ~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
......||+|.+. ..|+|++++.|.+
T Consensus 85 ~~~~~~w~~L~~~----~~G~i~~~~~~~p 110 (111)
T cd04052 85 TSVGQQWFPLSGN----GQGRIRISALWKP 110 (111)
T ss_pred hhccceeEECCCC----CCCEEEEEEEEec
Confidence 2235799999862 3599999988764
No 178
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.56 E-value=5.5e-15 Score=136.59 Aligned_cols=105 Identities=18% Similarity=0.292 Sum_probs=87.9
Q ss_pred cCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCC---CceEEE
Q 004100 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITI 429 (773)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v 429 (773)
.+..|.|.|+|++|+||+.+ +..|.+||||++.+.+ ...+|+++++++||.|||+|.|.+..+ ...|.|
T Consensus 9 ~~~~~~L~V~Vi~a~~L~~~---d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~ 85 (133)
T cd08384 9 NTQRRGLIVGIIRCVNLAAM---DANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEI 85 (133)
T ss_pred cCCCCEEEEEEEEEcCCCCc---CCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEE
Confidence 34458999999999999987 4457899999999843 357999999999999999999998753 468999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004100 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 430 ~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
+|||++..+ ++++||.+.+++.. .+....+||++..
T Consensus 86 ~V~d~d~~~--------~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 86 TVWDKDIGK--------SNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EEEeCCCCC--------CccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999998765 78999999999986 3445578998854
No 179
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.56 E-value=3.6e-14 Score=131.04 Aligned_cols=105 Identities=14% Similarity=0.246 Sum_probs=85.1
Q ss_pred cCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC------eeeeeeeccCCCCCccccEEEEEEeC---CCceEE
Q 004100 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ------KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVIT 428 (773)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~ 428 (773)
.+..+.|.|.|++|+||+.+ +..|.+||||++.+.+ .+.||++++++.||+|||+|.|++.. ....|.
T Consensus 11 ~~~~~~L~V~VikarnL~~~---~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~ 87 (138)
T cd08408 11 NALTGRLSVEVIKGSNFKNL---AMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLM 87 (138)
T ss_pred cCCCCeEEEEEEEecCCCcc---ccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEE
Confidence 34558999999999999987 5567899999998832 24699999999999999999999874 356999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004100 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 429 v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
|.|||.+.++ ++++||.+.+++..... ....+|+.+.
T Consensus 88 ~~V~~~~~~~--------~~~~iG~v~l~~~~~~~-~~~~hW~~~l 124 (138)
T cd08408 88 FSVYNKRKMK--------RKEMIGWFSLGLNSSGE-EEEEHWNEMK 124 (138)
T ss_pred EEEEECCCCC--------CCcEEEEEEECCcCCCc-hHHHHHHHHH
Confidence 9999998765 89999999999875432 1235676664
No 180
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.56 E-value=3.2e-14 Score=131.98 Aligned_cols=103 Identities=25% Similarity=0.401 Sum_probs=84.0
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEEeecccCCCCCccccceEEEEeeCC--CCCeEEEEEEEcc
Q 004100 200 WYLRVNVIEAQDLQPTDKGRFPEVYVKAQLG--N---QALRTRVSASRTINPMWNEDLMFVAAEP--FEEHLILTVEDRV 272 (773)
Q Consensus 200 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~~ 272 (773)
+.|.|+|++|++|...+..+.+||||++.+. + .+.+|+++++ +.||.|||.|.|.+... .+..|.|+|||++
T Consensus 15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 4799999999999998888999999999983 2 3578998876 99999999999987532 3458999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceEEEcccC
Q 004100 273 APNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKH 309 (773)
Q Consensus 273 ~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~ 309 (773)
..+++++||++.+++.+... ...+|+.+...
T Consensus 94 ~~~~~~~lG~~~i~~~~~~~------~~~~w~~~~~~ 124 (136)
T cd08405 94 RLSRNDLIGKIYLGWKSGGL------ELKHWKDMLSK 124 (136)
T ss_pred CCCCCcEeEEEEECCccCCc------hHHHHHHHHhC
Confidence 98899999999999987521 24556655443
No 181
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.56 E-value=6e-14 Score=128.88 Aligned_cols=116 Identities=27% Similarity=0.446 Sum_probs=97.4
Q ss_pred eEEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeeeeeeccCCCC-CCeeecEEEEEecCCCCceEEEEEEeC
Q 004100 38 QYLYVRVVKAKDLPPKD--VTGSCDPYVEVKMG------NYKGTTRHFEKKT-NPEWNQVFAFSKDRIQSSVLEVTVKDK 108 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d--~~~~~dpyv~v~~~------~~~~~T~~~~~~~-nP~WnE~f~f~v~~~~~~~l~i~V~d~ 108 (773)
..|+|+|++|+||+..+ ..+.+||||++++. ..+++|+++.++. ||.|||+|.|.+.......|.|+|||.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 36999999999999887 47789999999994 4568999987765 999999999998765567899999999
Q ss_pred CCCCCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCC-ceeeEEEEEEEE
Q 004100 109 DFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAVWM 161 (773)
Q Consensus 109 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~ 161 (773)
+..++++||.+.+++.++..+ ..|++|.+..|. ...|.|.+.+++
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g--------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQG--------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCc--------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 877899999999999999532 378999988765 456899888764
No 182
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.55 E-value=1e-14 Score=134.90 Aligned_cols=105 Identities=18% Similarity=0.334 Sum_probs=86.4
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCC---CceEEEE
Q 004100 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIG 430 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~ 430 (773)
+..+.|.|.|++|+||+.+ + .+.+||||++.+.+ .+.||++++++.||.|||.|.|.+... ...|.|+
T Consensus 12 ~~~~~L~V~V~~a~nL~~~---~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~ 87 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQL---D-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLS 87 (137)
T ss_pred CCCCeEEEEEEEecCCCcc---c-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEE
Confidence 3447999999999999987 3 46799999999843 356999999999999999999998632 4689999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004100 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
|+|.+..+ ++++||++.|+......+....+|..+..
T Consensus 88 V~~~~~~~--------~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 88 VMQSGGVR--------KSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EEeCCCCC--------CcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 99998765 78999999999776666666677777644
No 183
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.55 E-value=5.4e-14 Score=128.03 Aligned_cols=105 Identities=29% Similarity=0.444 Sum_probs=88.3
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEe-c--
Q 004100 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSK-D-- 94 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v-~-- 94 (773)
|...+++.|+ +..+.|.|+|++|++|+..+..+.+||||++.+.+ .+.+|++++++.||.|||+|.|.. .
T Consensus 2 G~~~~~l~y~--~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 2 GTLEFTLLYD--PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred cEEEEEEEEe--CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 3456666776 55578999999999999888888999999999842 468999999999999999999963 2
Q ss_pred CCCCceEEEEEEeCCCCCCeeeEEEEEEcCccCCC
Q 004100 95 RIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKR 129 (773)
Q Consensus 95 ~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~ 129 (773)
+.....+.|+|||.+..++++||++.++++++..+
T Consensus 80 ~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 80 DIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPN 114 (123)
T ss_pred HhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCC
Confidence 23457899999999877889999999999999865
No 184
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.55 E-value=2.2e-14 Score=127.76 Aligned_cols=99 Identities=24% Similarity=0.312 Sum_probs=84.1
Q ss_pred CCCCCCcEEEEEECCe-eeeeeeccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecC
Q 004100 382 GRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLS 459 (773)
Q Consensus 382 ~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~ 459 (773)
..|.+||||++.++++ ..+|++++++.||.|||.|.|.+.++ ...|.|.|+|++.+ +|++||++.++|+
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~---------~d~~iG~~~v~L~ 79 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR---------HDPVLGSVSISLN 79 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC---------CCCeEEEEEecHH
Confidence 3578999999999885 57999999999999999999999875 67899999999865 4899999999999
Q ss_pred cccc-CCeEEeeEEeEeecCCCcccccEEEEEEEEee
Q 004100 460 TLET-DRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (773)
Q Consensus 460 ~l~~-~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~ 495 (773)
++.. +.....||+|.. ...|+|+++++|.|
T Consensus 80 ~l~~~~~~~~~w~~L~~------~~~G~i~~~~~~~p 110 (111)
T cd04052 80 DLIDATSVGQQWFPLSG------NGQGRIRISALWKP 110 (111)
T ss_pred HHHhhhhccceeEECCC------CCCCEEEEEEEEec
Confidence 9843 445678999953 24599999999866
No 185
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.55 E-value=6.6e-14 Score=129.44 Aligned_cols=104 Identities=24% Similarity=0.300 Sum_probs=84.8
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--C---eeeeeeeccCCCCCccccEEEEEEeCC---CceEEEE
Q 004100 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIG 430 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~ 430 (773)
+..|.|+|.|++|++|+.+ +..|.+||||++.+. + ...+|+++++++||.|||.|.|.+... ...|.|+
T Consensus 11 ~~~~~L~V~v~~A~~L~~~---d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~ 87 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAM---DITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIA 87 (134)
T ss_pred CCCCEEEEEEEEeeCCCcc---ccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 4458999999999999987 455889999999983 2 256999999999999999999998642 3479999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004100 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
|||++.++ ++++||++.|++... +....+|+++..
T Consensus 88 v~d~~~~~--------~~~~IG~~~l~~~~~--~~~~~~w~~~~~ 122 (134)
T cd08403 88 VVDYDRVG--------HNELIGVCRVGPNAD--GQGREHWNEMLA 122 (134)
T ss_pred EEECCCCC--------CCceeEEEEECCCCC--CchHHHHHHHHH
Confidence 99999876 799999999998743 344567877754
No 186
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.54 E-value=8.7e-14 Score=127.57 Aligned_cols=118 Identities=22% Similarity=0.263 Sum_probs=89.8
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-------------eeeeeeeccCCCCCcc-ccEEEEEEeCCCceEE
Q 004100 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-------------KWVRTRTIIDSPTPKW-NEQYTWEVFDPCTVIT 428 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-------------~~~~T~~~~~t~~P~w-ne~~~f~v~~~~~~l~ 428 (773)
.+.|.+++|+||+ . +..|.+||||++.+.+ +..+|+++++++||+| ||.|.|.+. +.+.|.
T Consensus 2 ~~~~~~~~A~~L~-~---~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~ 76 (137)
T cd08691 2 SFSLSGLQARNLK-K---GMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLE 76 (137)
T ss_pred EEEEEEEEeCCCC-C---ccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEE
Confidence 4679999999997 4 4458999999999842 3689999999999999 999999985 467899
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccC---CeEEeeEEeEeecCCCcccccEEEEEE
Q 004100 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD---RVYTHSYPLLVLYPNGVKKMGEIHLAV 491 (773)
Q Consensus 429 v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~~g~~~~G~v~l~~ 491 (773)
|+|||++..+ + ...+++||++.|+++++..+ .....||+|......+ .-.|++.+.+
T Consensus 77 v~V~D~~~~~---~--~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s-~v~G~~~l~~ 136 (137)
T cd08691 77 IEVKDKFAKS---R--PIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTD-HVSGQLTFRF 136 (137)
T ss_pred EEEEecCCCC---C--ccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCC-cEEEEEEEEe
Confidence 9999976432 0 01278999999999999654 3456789886433222 2358777654
No 187
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.53 E-value=1.7e-14 Score=133.63 Aligned_cols=104 Identities=24% Similarity=0.335 Sum_probs=88.4
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-----eeeeeeccCCCCCccccEEEEEEeCC---CceEEEEE
Q 004100 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-----WVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGV 431 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-----~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v 431 (773)
..+.|.|.|++|+||+.. +..+.+||||++.+.+. ..+|+++.++.||.|||+|.|.+... ...|.|+|
T Consensus 12 ~~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v 88 (134)
T cd00276 12 TAERLTVVVLKARNLPPS---DGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITV 88 (134)
T ss_pred CCCEEEEEEEEeeCCCCc---cCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence 347999999999999976 44578999999998542 46999999999999999999998764 57899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEee
Q 004100 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 476 (773)
||.+..+ ++++||.+.+++++ .+....+|++|...
T Consensus 89 ~d~~~~~--------~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 89 VDKDSVG--------RNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred EecCCCC--------CCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 9998764 78999999999999 56667889998653
No 188
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.53 E-value=2.1e-14 Score=176.64 Aligned_cols=119 Identities=24% Similarity=0.464 Sum_probs=103.5
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-eeeeeeccCCCCCccccEEEEEEeCCC--ceEEEEEEeCC
Q 004100 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPC--TVITIGVFDNC 435 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~--~~l~v~v~d~~ 435 (773)
.-.|.|.|+|++|+||. +..|++||||++++|++ +.||++++++.||+|||+|+|.+.+|. +.|+|+|||+|
T Consensus 1977 ~~~G~L~V~V~~a~nl~-----~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK-----QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred hCCcceEEEEeeccccc-----cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 45799999999999996 22478999999999965 789999999999999999999999974 78999999999
Q ss_pred CCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccE---EEEEEEEee
Q 004100 436 HLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGE---IHLAVRFTC 495 (773)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~---v~l~~~~~~ 495 (773)
.++ ++.||++.|++.++..++.++.||+|.. +| +|.|+ ++++++|++
T Consensus 2052 ~f~---------kd~~G~~~i~l~~vv~~~~~~~~~~L~~---~~-~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2052 TFG---------KSSLGKVTIQIDRVVMEGTYSGEYSLNP---ES-NKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred ccC---------CCCCceEEEEHHHHhcCceeeeeeecCc---cc-ccCCCcceEEEEEEecC
Confidence 885 4599999999999999999999999974 22 35577 999888853
No 189
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.52 E-value=1.8e-13 Score=119.85 Aligned_cols=98 Identities=27% Similarity=0.483 Sum_probs=72.1
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCC
Q 004100 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLH 438 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~ 438 (773)
|.|.|++|+||+ +.+||||++.+++ ...||+++++|+||+|||+|.|++.. ...|.+.|||++.-.
T Consensus 1 L~V~V~~A~~L~--------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFK--------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCC--------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccc
Confidence 579999999995 4599999998853 35899999999999999999999864 779999999984100
Q ss_pred -CCCCCCCCCCCccEEEEEecC--ccccCCeEEeeEE
Q 004100 439 -GGDKAGGARDSRIGKVRIRLS--TLETDRVYTHSYP 472 (773)
Q Consensus 439 -~~~~~~~~~d~~lG~~~i~l~--~l~~~~~~~~~~~ 472 (773)
..+ +.++|+++|++.|.|+ .+....+....+.
T Consensus 72 ~~~d--~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~ 106 (118)
T cd08686 72 VKLD--GEGTDAIMGKGQIQLDPQSLQTKKWQEKVIS 106 (118)
T ss_pred cccc--ccCcccEEEEEEEEECHHHhccCCeeEEEEE
Confidence 000 1137999988777764 3444443333333
No 190
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.51 E-value=1.1e-13 Score=125.68 Aligned_cols=89 Identities=28% Similarity=0.413 Sum_probs=80.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEE--EEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCce
Q 004100 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQA--LRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEV 279 (773)
Q Consensus 202 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d~~ 279 (773)
|+|.|++|++|+..+..+.+||||++.++++. .+|+++++ +.||.|||+|.|.+..+....|.|+|||++..++|++
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 78999999999999998999999999999865 56777776 9999999999999877777899999999999899999
Q ss_pred eEEEEEeccccc
Q 004100 280 LGKCMIPLQYVD 291 (773)
Q Consensus 280 iG~~~i~L~~l~ 291 (773)
||++.+++++..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999999764
No 191
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.51 E-value=2.4e-13 Score=123.77 Aligned_cols=99 Identities=24% Similarity=0.386 Sum_probs=81.6
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-----CeeeeeeeccCCCCCccccEEEEEEeCC----CceEEEEE
Q 004100 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIIDSPTPKWNEQYTWEVFDP----CTVITIGV 431 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v~v 431 (773)
.+.|+|.|++|++|+.. +..+.+||||++.+. ....||++++++.||.|||.|.|..... ...+.|+|
T Consensus 14 ~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 14 NSALHCTIIRAKGLKAM---DANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred CCEEEEEEEEeeCCCCC---CCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 47899999999999876 445789999999883 2468999999999999999999974432 46899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeE
Q 004100 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSY 471 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 471 (773)
||++.+ ++++||++.++++++..+.....++
T Consensus 91 ~d~~~~---------~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 91 LDEDRF---------GNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred EEcCCc---------CCeeEEEEEEEcccCCCCcceEeec
Confidence 999764 4789999999999998776444443
No 192
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.51 E-value=9.8e-14 Score=125.66 Aligned_cols=97 Identities=16% Similarity=0.229 Sum_probs=82.6
Q ss_pred EEEEccCCCCCccCCCCCCCCcEEEEEECCe-------eeeeeeccCCCCCccccEEEEEEeC-CCceEEEEEEeCCC--
Q 004100 367 GILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-------WVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCH-- 436 (773)
Q Consensus 367 ~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-------~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~-- 436 (773)
..++|++|+.. +..|.+||||++.+.+. ..||+++++++||.|||.|.|.+.. ....|.|+|||+|.
T Consensus 5 ~~i~a~~L~~~---d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDK---DVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCC---CCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc
Confidence 34789999987 44578999999999654 3899999999999999999998753 46789999999986
Q ss_pred --CCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004100 437 --LHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 437 --~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
.+ ++++||++.++++++..+.....|++|.
T Consensus 82 ~~~~--------~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 82 KDLS--------DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCC--------CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 44 7899999999999998777677888883
No 193
>PLN03008 Phospholipase D delta
Probab=99.50 E-value=1.2e-13 Score=155.80 Aligned_cols=104 Identities=20% Similarity=0.368 Sum_probs=89.6
Q ss_pred CCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeeeEEEEEEcCccCCCCCCCCC
Q 004100 57 GSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSP 135 (773)
Q Consensus 57 ~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~ 135 (773)
+++||||+|.++++ +.||++++++.||+|||+|.|.+.+. ...|.|+|||.|.+++++||++.|+|.++..+.
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge----- 148 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGE----- 148 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCC-----
Confidence 47899999999886 56999999999999999999999875 468999999999998899999999999998763
Q ss_pred CcCeEEEeeeCCCCc--eeeEEEEEEEEeccCC
Q 004100 136 LAPQWYRLEDRKGDK--VRGELMLAVWMGTQAD 166 (773)
Q Consensus 136 ~~~~w~~L~~~~~~~--~~G~i~l~~~~~~~~d 166 (773)
....|++|.+..++. ..|+|+++++|.+...
T Consensus 149 ~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~ 181 (868)
T PLN03008 149 RISGWFPVLGASGKPPKAETAIFIDMKFTPFDQ 181 (868)
T ss_pred ceEEEEEccccCCCCCCCCcEEEEEEEEEEccc
Confidence 357999999987653 3579999999987543
No 194
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.50 E-value=1.2e-13 Score=125.01 Aligned_cols=97 Identities=25% Similarity=0.310 Sum_probs=82.9
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCC----C-
Q 004100 44 VVKAKDLPPKDVTGSCDPYVEVKMGNY-------KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDF----V- 111 (773)
Q Consensus 44 v~~a~~L~~~d~~~~~dpyv~v~~~~~-------~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~----~- 111 (773)
.++|++|+..+..+.+||||++.+.+. .++|++++++.||+|||+|.|.+.....+.|.|+|||++. .
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 588999999998899999999999775 3899999999999999999998654346789999999996 6
Q ss_pred CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeee
Q 004100 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (773)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (773)
++++||++.+++.+|.... ....|++|..
T Consensus 86 ~~d~iG~~~i~l~~l~~~~-----~~~~~~~l~~ 114 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSP-----GQKLTLPLKG 114 (120)
T ss_pred CCcEEEEEEEEHHHHhcCC-----CcEEEEEccC
Confidence 9999999999999998643 2456888844
No 195
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.50 E-value=1.2e-13 Score=120.85 Aligned_cols=78 Identities=28% Similarity=0.438 Sum_probs=67.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeC------
Q 004100 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDK------ 108 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~------ 108 (773)
|.|+|.+|+||+ +.+||||++.+++ .+.+|+++++|+||+|||+|.|.+.. ...|.+.|||.
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 689999999996 4589999999964 35899999999999999999999974 67999999997
Q ss_pred -CCC-CCeeeEEEEEEcC
Q 004100 109 -DFV-KDDFMGRVLFDLN 124 (773)
Q Consensus 109 -~~~-~d~~lG~~~i~l~ 124 (773)
|.. +|+++|.+.+.|.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccCcccEEEEEEEEEC
Confidence 344 8999988888765
No 196
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.49 E-value=4.5e-13 Score=123.02 Aligned_cols=117 Identities=21% Similarity=0.351 Sum_probs=92.7
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEE------CCeeeeeeeccCCC-CCccccEEEEEEeCCC-ceEEEEEEeC
Q 004100 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKY------GQKWVRTRTIIDSP-TPKWNEQYTWEVFDPC-TVITIGVFDN 434 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~------~~~~~~T~~~~~t~-~P~wne~~~f~v~~~~-~~l~v~v~d~ 434 (773)
.|+|+|++|+||+.++. +..+.+||||++++ +....||+++.++. ||.|||+|.|.+..+. ..|.++|||+
T Consensus 3 ~l~v~vi~a~~L~~~~~-~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKG-DKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCC-CCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 68999999999998742 13578999999999 34568999988876 9999999999998764 6799999998
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004100 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
+.. ++++||++.++++++..+ ..|++|....... ...|.|.+.+++
T Consensus 82 ~~~---------~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~-~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG---------DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEP-LELSTLFVHIDI 127 (128)
T ss_pred CCC---------CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCC-CcceeEEEEEEE
Confidence 764 578999999999999765 3678887643321 234788877765
No 197
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.45 E-value=1.7e-13 Score=168.71 Aligned_cols=121 Identities=18% Similarity=0.329 Sum_probs=101.2
Q ss_pred ccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCCC-CceEEEEEEeCCC
Q 004100 33 LVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQ-SSVLEVTVKDKDF 110 (773)
Q Consensus 33 ~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~~-~~~l~i~V~d~~~ 110 (773)
++.-+|.|.|+|++|+||. +..+++||||+++++++ +.||++++++.||+|||+|.|.++++. .+.|.|+|||+|.
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 3466899999999999998 33689999999999975 889999999999999999999997764 4679999999999
Q ss_pred CCCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeE---EEEEEEEe
Q 004100 111 VKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGE---LMLAVWMG 162 (773)
Q Consensus 111 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~---i~l~~~~~ 162 (773)
++++.||.++|++.++..++ ....||+|.+...+ .|. |.+.+.+.
T Consensus 2053 f~kd~~G~~~i~l~~vv~~~-----~~~~~~~L~~~~~k--~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2053 FGKSSLGKVTIQIDRVVMEG-----TYSGEYSLNPESNK--DGSSRTLEIEFQWS 2100 (2102)
T ss_pred cCCCCCceEEEEHHHHhcCc-----eeeeeeecCccccc--CCCcceEEEEEEec
Confidence 96779999999999999754 36789999964221 355 88876554
No 198
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.41 E-value=1.2e-12 Score=116.53 Aligned_cols=86 Identities=26% Similarity=0.414 Sum_probs=74.7
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEECCe------eeeeeccCCCCCCeeecEEEEEecCCC----CceEEEEEEeCCCC-
Q 004100 43 RVVKAKDLPPKDVTGSCDPYVEVKMGNY------KGTTRHFEKKTNPEWNQVFAFSKDRIQ----SSVLEVTVKDKDFV- 111 (773)
Q Consensus 43 ~v~~a~~L~~~d~~~~~dpyv~v~~~~~------~~~T~~~~~~~nP~WnE~f~f~v~~~~----~~~l~i~V~d~~~~- 111 (773)
-.++|++|+..+..+.+||||++++.+. .++|++++++.||+|| +|.|.+.++. ...|.|+|||++..
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~ 83 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG 83 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence 3679999999998899999999998653 5899999999999999 7888764332 57899999999998
Q ss_pred CCeeeEEEEEEcCccCCC
Q 004100 112 KDDFMGRVLFDLNEIPKR 129 (773)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~ 129 (773)
+|++||++.+++.++...
T Consensus 84 ~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 84 KHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCcEEEEEEEEHHHHhcC
Confidence 999999999999999844
No 199
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=99.40 E-value=3e-12 Score=138.87 Aligned_cols=180 Identities=26% Similarity=0.376 Sum_probs=126.9
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHH---HHhhhhcccCCchhHHHHHHHHHHHHHccchh---HHHHHHHHHHHHhhcc
Q 004100 560 HMWSMRRSKANFFRIMGVLSGIIAVG---KWFDQICNWKNPITTVLIHILFIILVLYPELI---LPTVFLYLFLIGVWYY 633 (773)
Q Consensus 560 ~~~s~~~~~~n~~Rl~~~~~~~~~~~---~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l~---~p~~~l~l~~~~~~~~ 633 (773)
+.+|+..+..|+.|+.+.+..++.++ +.+.++++|++|..|..++++|+++|++|.+. +|++++. +++++..|
T Consensus 1 p~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~ll-~~il~~~y 79 (359)
T PF06398_consen 1 PPLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLLL-FGILLPSY 79 (359)
T ss_pred CCcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 35788899999999999999999999 99999999999999999999999999999883 4544433 34445555
Q ss_pred ccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----hccCC
Q 004100 634 RWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQS----LLSWR 709 (773)
Q Consensus 634 ~~~~~~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~n----l~~w~ 709 (773)
..++..+.. .... +..+.+.+.+..|+ +...-..+..+++.+||.|+.+.+.++.+.. +++|+
T Consensus 80 l~~~p~~~~--~~~~-----~~~~~~~~~~~~pt------l~~~s~e~~~nL~dlQn~m~~~~~~~d~~~~~~~~~~~f~ 146 (359)
T PF06398_consen 80 LYRHPSPTS--SLPK-----SYEDHNPEPSEGPT------LDKPSREIVMNLRDLQNKMEDLSDPYDFLSSFLYPYLNFS 146 (359)
T ss_pred HeecCCCcc--cccc-----cccccCCCcCCCCC------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 444311111 0000 00000011111111 1101234567888999999999999999985 45799
Q ss_pred ChhhHHHHHHHHHHHHHHHh----hhhhhHHHhhhhhh-hccCCccCCC
Q 004100 710 DPRATALFVIFCLIAAIVLY----VTPFQVVALLTGFY-VLRHPRFRHK 753 (773)
Q Consensus 710 ~p~~t~~~~~~l~~~~~~~~----~vP~r~i~l~~g~~-~~~~P~~r~~ 753 (773)
++..|.+++.+|+++.+.++ ++|+|++++++|.. .+.||..++.
T Consensus 147 ~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~~ 195 (359)
T PF06398_consen 147 DENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQA 195 (359)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHHH
Confidence 99999998888877766544 58999999999944 7889988753
No 200
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.39 E-value=1.6e-12 Score=109.75 Aligned_cols=81 Identities=38% Similarity=0.596 Sum_probs=73.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004100 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~---~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (773)
|.|+|++|+||+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+.......|.|+|||.+.. +|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988788999999999998 569999999999999999999998655666799999999998 7999
Q ss_pred eEEEE
Q 004100 116 MGRVL 120 (773)
Q Consensus 116 lG~~~ 120 (773)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 201
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.39 E-value=1.3e-12 Score=116.41 Aligned_cols=88 Identities=20% Similarity=0.225 Sum_probs=73.3
Q ss_pred EEEEEccCCCCCccCCCCCCCCcEEEEEECCe------eeeeeeccCCCCCccccEEEEEEeC-----CCceEEEEEEeC
Q 004100 366 LGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK------WVRTRTIIDSPTPKWNEQYTWEVFD-----PCTVITIGVFDN 434 (773)
Q Consensus 366 v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~------~~~T~~~~~t~~P~wne~~~f~v~~-----~~~~l~v~v~d~ 434 (773)
+-.++|++|+.+ +..|.+||||++.+.+. .++|+++++++||.|| .|.|++.+ +...|.|+|||+
T Consensus 4 ~~~i~a~~L~~~---d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~ 79 (110)
T cd04047 4 ELQFSGKKLDKK---DFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDY 79 (110)
T ss_pred EEEEEeCCCCCC---CCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEe
Confidence 345689999987 45578999999988543 4899999999999999 78887643 267999999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecCccccCC
Q 004100 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDR 465 (773)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 465 (773)
+..+ +|++||++.++++++..++
T Consensus 80 d~~~--------~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 80 DSSG--------KHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCCC--------CCcEEEEEEEEHHHHhcCC
Confidence 9876 7999999999999997554
No 202
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=3.3e-13 Score=134.27 Aligned_cols=220 Identities=18% Similarity=0.236 Sum_probs=161.4
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeecccCCCCCccccceEEEEe--eCC-CCCeEEEEEEEc
Q 004100 200 WYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-----QALRTRVSASRTINPMWNEDLMFVA--AEP-FEEHLILTVEDR 271 (773)
Q Consensus 200 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~wne~f~f~~--~~~-~~~~l~i~V~d~ 271 (773)
..+..+|..|++|.+++.++..|||++..++. .+++|++..+ +.||.|||.-.+.. .+. ....+.+.|.|.
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhhheeeccC
Confidence 35889999999999999999999999999973 4578888876 99999998865533 222 244678888998
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEccCcccCCCCCccCCCCCc
Q 004100 272 VAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRP 351 (773)
Q Consensus 272 ~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p 351 (773)
+.....+++|+..+++..+...+. .....|+.-.-+.... ...+.+..|.+.+++.+
T Consensus 172 ~~~~~~~sqGq~r~~lkKl~p~q~--k~f~~cl~~~lp~~ra--d~~~~E~rg~i~isl~~------------------- 228 (362)
T KOG1013|consen 172 DKKTHNESQGQSRVSLKKLKPLQR--KSFNICLEKSLPSERA--DRDEDEERGAILISLAY------------------- 228 (362)
T ss_pred cccccccCcccchhhhhccChhhc--chhhhhhhccCCcccc--cccchhhccceeeeecc-------------------
Confidence 888889999999999888875432 2233454433331111 01122446666666542
Q ss_pred cccccccCccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCC---
Q 004100 352 TAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP--- 423 (773)
Q Consensus 352 ~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~--- 423 (773)
......+.|.+++|..|..+ |.+|.+||||..++.. .+.+|.+.+++++|.||++|.|.+...
T Consensus 229 ------~s~~~~l~vt~iRc~~l~ss---Dsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa 299 (362)
T KOG1013|consen 229 ------SSTTPGLIVTIIRCSHLASS---DSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLA 299 (362)
T ss_pred ------CcCCCceEEEEEEeeeeecc---ccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchh
Confidence 12235788999999999988 5568999999998843 247999999999999999999988753
Q ss_pred CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCc
Q 004100 424 CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLST 460 (773)
Q Consensus 424 ~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~ 460 (773)
...+.|.|+|.+.= ...+++|-+...+..
T Consensus 300 ~~kv~lsvgd~~~G--------~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 300 YKKVALSVGDYDIG--------KSNDSIGGSMLGGYR 328 (362)
T ss_pred cceEEEeecccCCC--------cCccCCCcccccccc
Confidence 56899999998752 146788877665443
No 203
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1e-12 Score=139.61 Aligned_cols=126 Identities=29% Similarity=0.422 Sum_probs=102.2
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCC--
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHG-- 439 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~-- 439 (773)
..+.++|+.|+||.+. |..|++||||.+.+|..+.||+++...+||+|||.|.|++....+.|+|.|||+|.--.
T Consensus 295 akitltvlcaqgl~ak---dktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksk 371 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAK---DKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSK 371 (1283)
T ss_pred eeeEEeeeecccceec---ccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHH
Confidence 6889999999999987 66799999999999999999999999999999999999999999999999999875210
Q ss_pred -CCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004100 440 -GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 440 -~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
..+-.++.|||||+..|.+..+... ++-||.|.....+. .-.|.|+|.+.+
T Consensus 372 lrqkl~resddflgqtvievrtlsge--mdvwynlekrtdks-avsgairlhisv 423 (1283)
T KOG1011|consen 372 LRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEKRTDKS-AVSGAIRLHISV 423 (1283)
T ss_pred HHHHhhhcccccccceeEEEEecccc--hhhhcchhhccchh-hccceEEEEEEE
Confidence 0011456899999999999988754 47899996543322 235777766554
No 204
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.30 E-value=1.3e-11 Score=104.10 Aligned_cols=82 Identities=30% Similarity=0.537 Sum_probs=74.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---EEEEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCc
Q 004100 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGN---QALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDE 278 (773)
Q Consensus 202 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d~ 278 (773)
|+|+|++|++|...+..+.+||||++.+++ ..++|+++++ +.+|.|||.|.|.+..+..+.|.|+|||++..++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence 689999999999988888999999999987 6799999877 899999999999987777777999999999988899
Q ss_pred eeEEEE
Q 004100 279 VLGKCM 284 (773)
Q Consensus 279 ~iG~~~ 284 (773)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
No 205
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=4.7e-12 Score=134.75 Aligned_cols=118 Identities=31% Similarity=0.577 Sum_probs=101.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-------
Q 004100 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV------- 111 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~------- 111 (773)
.++++|+-|.+|.+.|..|++||||.+.++..+.+|++|.+.+||+|||.|.|...+ .++.+.+.|||.|..
T Consensus 296 kitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~dlksklrq 374 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDNDLKSKLRQ 374 (1283)
T ss_pred eeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcccHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999876 368899999998751
Q ss_pred -----CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCC-ceeeEEEEEEEEecc
Q 004100 112 -----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAVWMGTQ 164 (773)
Q Consensus 112 -----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~~~~ 164 (773)
+|||+|+..|.++.|... .+.||+|+.+... ...|-|.+.+.+.-.
T Consensus 375 kl~resddflgqtvievrtlsge-------mdvwynlekrtdksavsgairlhisveik 426 (1283)
T KOG1011|consen 375 KLTRESDDFLGQTVIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHISVEIK 426 (1283)
T ss_pred HhhhcccccccceeEEEEecccc-------hhhhcchhhccchhhccceEEEEEEEEEc
Confidence 799999999999988643 5689999987643 356888877765443
No 206
>PLN02270 phospholipase D alpha
Probab=99.29 E-value=2.5e-11 Score=137.38 Aligned_cols=128 Identities=19% Similarity=0.253 Sum_probs=108.0
Q ss_pred ceEEEEEEEccCCCCCcc---------------CCCCCCCCcEEEEEECCee-eeeeeccCC-CCCccccEEEEEEeCCC
Q 004100 362 GVLELGILNAQGLMPMKT---------------KDGRGTTDAYCVAKYGQKW-VRTRTIIDS-PTPKWNEQYTWEVFDPC 424 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~---------------~~~~~~~dpyv~v~~~~~~-~~T~~~~~t-~~P~wne~~~f~v~~~~ 424 (773)
|.|.++|++|++|++++- ..+++.+||||.|.+++.+ .||+++.+. .||.|||.|.+++..+.
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~ 87 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA 87 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCc
Confidence 899999999999986310 1234678999999998876 599999884 69999999999999999
Q ss_pred ceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEEeecch
Q 004100 425 TVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSSL 498 (773)
Q Consensus 425 ~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~~~~ 498 (773)
+.+.+.|.|.|.++ ..+||++.||..++..|..+++|+++.+.+.+..+...+|+++++|.+...
T Consensus 88 ~~v~f~vkd~~~~g---------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 88 SNIIFTVKDDNPIG---------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred ceEEEEEecCCccC---------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 99999999999985 569999999999999999999999998765443333458999999988654
No 207
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.26 E-value=4.6e-12 Score=142.13 Aligned_cols=89 Identities=25% Similarity=0.416 Sum_probs=80.0
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCee--eeeeeccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCC
Q 004100 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW--VRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHL 437 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~--~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~ 437 (773)
.-.++|.|++|.+|.+. |++|..|||+.+.+|++. -+++.+.+|+||+|++.|.+....| ...++|+|||+|..
T Consensus 612 ~~LvrVyvv~A~~L~p~---D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPS---DGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLE 688 (1105)
T ss_pred eeeEEEEEEEeeecccc---CCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecc
Confidence 45778999999999887 778999999999999988 4777888999999999999999987 67899999999987
Q ss_pred CCCCCCCCCCCCccEEEEEecCc
Q 004100 438 HGGDKAGGARDSRIGKVRIRLST 460 (773)
Q Consensus 438 ~~~~~~~~~~d~~lG~~~i~l~~ 460 (773)
+ +|+.||...|+|..
T Consensus 689 ~--------~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 689 A--------QDEKIGETTIDLEN 703 (1105)
T ss_pred c--------ccchhhceehhhhh
Confidence 6 89999999999875
No 208
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.18 E-value=1.3e-10 Score=105.01 Aligned_cols=94 Identities=19% Similarity=0.219 Sum_probs=78.3
Q ss_pred eEEEEEEEccCCCCCccCCCCC--CCCcEEEEEECC---eeeeeeeccCCCC--CccccEEEEEEeCC------------
Q 004100 363 VLELGILNAQGLMPMKTKDGRG--TTDAYCVAKYGQ---KWVRTRTIIDSPT--PKWNEQYTWEVFDP------------ 423 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~~--~~dpyv~v~~~~---~~~~T~~~~~t~~--P~wne~~~f~v~~~------------ 423 (773)
.|+|.|.+|+|++..+.. ..| .+||||++.+.+ ..++|.+.++++| |.||+.|.|++..+
T Consensus 1 eLRViIw~~~~v~~~~~~-~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTN-ITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred CEEEEEEECcCCcccccc-cCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 378999999997765432 234 599999999954 5689999999999 99999999987652
Q ss_pred ------------CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCC
Q 004100 424 ------------CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDR 465 (773)
Q Consensus 424 ------------~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 465 (773)
...|.++|||.|.++ +|++||.+.++|..+..+.
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s--------~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDKFS--------PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcccC--------CCCcceEEEEEhhhccccc
Confidence 358999999999987 8999999999999987654
No 209
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.17 E-value=2e-10 Score=99.78 Aligned_cols=100 Identities=40% Similarity=0.654 Sum_probs=85.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeeeE
Q 004100 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMG 117 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG 117 (773)
|.|+|++|++|......+.++|||.+.+.+ ..++|+++.++.||.|||.|.|.+.......+.|+||+.+.. ++.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 578999999998766667899999999998 889999999999999999999999764578899999999887 689999
Q ss_pred EEEEEcCccCCCCCCCCCCcCeEEEe
Q 004100 118 RVLFDLNEIPKRVPPDSPLAPQWYRL 143 (773)
Q Consensus 118 ~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (773)
.+.+++.++... ......|++|
T Consensus 81 ~~~~~l~~l~~~----~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDS----GKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhc----CCcCcceecC
Confidence 999999999711 1234567764
No 210
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.17 E-value=1.6e-10 Score=100.31 Aligned_cols=99 Identities=27% Similarity=0.506 Sum_probs=84.5
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-eeeeeeeccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCCCCCC
Q 004100 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~~~~~~ 441 (773)
+.|.|++|++|... ...+..||||++.+.+ ...+|+++.++.||.|||.|.|++.. ....+.|+|||++..+
T Consensus 1 l~v~i~~~~~l~~~---~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~--- 74 (102)
T cd00030 1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS--- 74 (102)
T ss_pred CEEEEEeeeCCCCc---CCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence 46899999999764 3346799999999988 88999999999999999999999998 6789999999987654
Q ss_pred CCCCCCCCccEEEEEecCccc-cCCeEEeeEEe
Q 004100 442 KAGGARDSRIGKVRIRLSTLE-TDRVYTHSYPL 473 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L 473 (773)
++.+||.+.+++.++. .+.....|++|
T Consensus 75 -----~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 -----KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred -----CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 5889999999999998 55555667654
No 211
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.15 E-value=2.8e-10 Score=99.05 Aligned_cols=90 Identities=37% Similarity=0.651 Sum_probs=80.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004100 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY---KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~---~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (773)
|.|+|++|++|......+..+|||++++.+. ..+|+++.++.||.|||+|.|.+.......|.|+|||.+.. .+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 7899999999988775568999999999875 79999999889999999999999775578999999999877 7999
Q ss_pred eEEEEEEcCccCCC
Q 004100 116 MGRVLFDLNEIPKR 129 (773)
Q Consensus 116 lG~~~i~l~~l~~~ 129 (773)
+|.+.+++.++..+
T Consensus 82 ~G~~~~~l~~~~~~ 95 (101)
T smart00239 82 IGQVTIPLSDLLLG 95 (101)
T ss_pred eEEEEEEHHHcccC
Confidence 99999999998765
No 212
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.13 E-value=3.4e-10 Score=98.51 Aligned_cols=91 Identities=30% Similarity=0.494 Sum_probs=79.0
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe---eeeeeeccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCC
Q 004100 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK---WVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHG 439 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~---~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~ 439 (773)
+.|.|++|++|.... ..+..+|||++.+++. ..+|+++.++.||.|||.|.|++..+ ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~~---~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~- 77 (101)
T smart00239 2 LTVKIISARNLPKKD---KKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG- 77 (101)
T ss_pred eEEEEEEeeCCCCCC---CCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc-
Confidence 679999999998652 2257899999999775 79999999999999999999999987 899999999997653
Q ss_pred CCCCCCCCCCccEEEEEecCccccCC
Q 004100 440 GDKAGGARDSRIGKVRIRLSTLETDR 465 (773)
Q Consensus 440 ~~~~~~~~d~~lG~~~i~l~~l~~~~ 465 (773)
.+.++|.+.+++.++..+.
T Consensus 78 -------~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 -------RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred -------CCceeEEEEEEHHHcccCc
Confidence 5899999999999987665
No 213
>PLN02223 phosphoinositide phospholipase C
Probab=99.13 E-value=4.7e-10 Score=122.30 Aligned_cols=116 Identities=17% Similarity=0.238 Sum_probs=93.7
Q ss_pred eEEEEEEEEeecCCCC-----CCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEe
Q 004100 38 QYLYVRVVKAKDLPPK-----DVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKD 107 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~-----d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d 107 (773)
..|.|+|+.|.++... +....+||||+|.+.| .+++|++..++.||+|||+|.|.+..+.-..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 4799999999987521 2234679999999976 35678777889999999999999987777889999999
Q ss_pred CCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCce-eeEEEEEEEE
Q 004100 108 KDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWM 161 (773)
Q Consensus 108 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~ 161 (773)
+|.. +++++|++.+++..|..+ -++++|.+..|... ...|.+.+.+
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~G--------yR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEG--------IRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCC--------ceeEeccCCCcCCCCCceEEEEEEe
Confidence 9987 899999999999999865 36789999887753 3466665543
No 214
>PLN02270 phospholipase D alpha
Probab=99.07 E-value=1.1e-09 Score=124.24 Aligned_cols=121 Identities=19% Similarity=0.345 Sum_probs=101.9
Q ss_pred eEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCe-eeeeeccCCC-CCCeeecEEEEEecCCC
Q 004100 38 QYLYVRVVKAKDLPPKD------------------VTGSCDPYVEVKMGNY-KGTTRHFEKK-TNPEWNQVFAFSKDRIQ 97 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d------------------~~~~~dpyv~v~~~~~-~~~T~~~~~~-~nP~WnE~f~f~v~~~~ 97 (773)
|.|.|+|.+|++|+..+ ..+++||||.|.+++. ..||+++.+. .||.|||+|.+.+...
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~- 86 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM- 86 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC-
Confidence 68999999999998521 1357899999999984 6799999875 6999999999999764
Q ss_pred CceEEEEEEeCCCCCCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCcee--eEEEEEEEEecc
Q 004100 98 SSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVR--GELMLAVWMGTQ 164 (773)
Q Consensus 98 ~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~--G~i~l~~~~~~~ 164 (773)
...|.|.|+|.+.++..+||.+.+++.++..+. ..+.||++.+..|+... ..|+++++|.+.
T Consensus 87 ~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~-----~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGE-----EVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred cceEEEEEecCCccCceEEEEEEEEHHHhcCCC-----ccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 478999999999998889999999999998764 36899999998876543 489999988864
No 215
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.06 E-value=8.7e-10 Score=99.64 Aligned_cols=91 Identities=30% Similarity=0.397 Sum_probs=77.3
Q ss_pred EEEEEEEeecCCCCC--CCC--CCCcEEEEEECC---eeeeeeccCCCCC--CeeecEEEEEecC---------------
Q 004100 40 LYVRVVKAKDLPPKD--VTG--SCDPYVEVKMGN---YKGTTRHFEKKTN--PEWNQVFAFSKDR--------------- 95 (773)
Q Consensus 40 L~V~v~~a~~L~~~d--~~~--~~dpyv~v~~~~---~~~~T~~~~~~~n--P~WnE~f~f~v~~--------------- 95 (773)
|+|.|.+|+|++..+ ..| .+||||++.+.+ .+++|.+..+++| |.||+.|.|++.-
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999976543 245 499999999986 4689999999999 9999999988643
Q ss_pred --------CCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCC
Q 004100 96 --------IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRV 130 (773)
Q Consensus 96 --------~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~ 130 (773)
.....|.+.|||.|.+ +|+++|++.++|..+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 2357899999999999 9999999999999988653
No 216
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.04 E-value=7.3e-10 Score=93.38 Aligned_cols=84 Identities=23% Similarity=0.379 Sum_probs=73.4
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCee
Q 004100 40 LYVRVVKAKDLPPKD---VTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDF 115 (773)
Q Consensus 40 L~V~v~~a~~L~~~d---~~~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~ 115 (773)
|.|+|..|+|+.-.+ ..+.+||||.+++++. +.||+. +.||.|||+|.|+++. ...+.+.|||+.....-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk--~nEiel~VyDk~~~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK--NNEEEVIVYDKGGDQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC--CcEEEEEEEeCCCCeecc
Confidence 679999999998776 5788999999999995 888987 4899999999999953 688999999997767778
Q ss_pred eEEEEEEcCccCC
Q 004100 116 MGRVLFDLNEIPK 128 (773)
Q Consensus 116 lG~~~i~l~~l~~ 128 (773)
+|...+.++++..
T Consensus 76 i~llW~~~sdi~E 88 (109)
T cd08689 76 VGLLWLRLSDIAE 88 (109)
T ss_pred eeeehhhHHHHHH
Confidence 9999999998874
No 217
>PLN02952 phosphoinositide phospholipase C
Probab=99.02 E-value=2.4e-09 Score=119.56 Aligned_cols=116 Identities=25% Similarity=0.386 Sum_probs=92.6
Q ss_pred eEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEE
Q 004100 38 QYLYVRVVKAKDLPPK------DVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVK 106 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~------d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~ 106 (773)
..|.|+|+.|.+++.. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..+.-..|+|+|+
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 4799999999997532 1123459999999965 4679999998899999999999987766678999999
Q ss_pred eCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCce-eeEEEEEEEE
Q 004100 107 DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWM 161 (773)
Q Consensus 107 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~ 161 (773)
|+|.. +++++|++.+++..|..+ -+|++|.+..|... .-.|.+.+++
T Consensus 550 D~D~~~~ddfiGq~~lPv~~Lr~G--------yR~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 550 EYDMSEKDDFGGQTCLPVSELRPG--------IRSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred ecCCCCCCCeEEEEEcchhHhcCC--------ceeEeCcCCCCCCCCCEEEEEEEEe
Confidence 99987 899999999999999865 26999998877642 2355555543
No 218
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.02 E-value=1.2e-09 Score=115.37 Aligned_cols=120 Identities=28% Similarity=0.444 Sum_probs=101.7
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccc-cEEEEEEeCC---CceEEEEEEeCCCC
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWN-EQYTWEVFDP---CTVITIGVFDNCHL 437 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wn-e~~~f~v~~~---~~~l~v~v~d~~~~ 437 (773)
|.|.|+|..|++||.||.+ ....|.||.+++++..+||.+-.+++||.|| +-|.|+|.|. ...|+|.+.|+|.-
T Consensus 3 gkl~vki~a~r~lpvmdka--sd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKA--SDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCcccccc--cccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 7889999999999999754 3568999999999999999999999999999 6699999874 67899999999987
Q ss_pred CCCCCCCCCCCCccEEEEEecCccc----------cCCeEEeeEEeEeecCCCcccccEEEEEEEEe
Q 004100 438 HGGDKAGGARDSRIGKVRIRLSTLE----------TDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (773)
Q Consensus 438 ~~~~~~~~~~d~~lG~~~i~l~~l~----------~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~ 494 (773)
+ .+|-||+|.|++..+. .|..+..|+|+...- -| -.|+|.+-+++.
T Consensus 81 s--------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-hg--irgeinvivkvd 136 (1169)
T KOG1031|consen 81 S--------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-HG--IRGEINVIVKVD 136 (1169)
T ss_pred c--------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-cc--ccceeEEEEEEe
Confidence 6 7899999999999872 356788999997531 22 358988888764
No 219
>PLN02223 phosphoinositide phospholipase C
Probab=99.00 E-value=3.7e-09 Score=115.42 Aligned_cols=105 Identities=21% Similarity=0.301 Sum_probs=84.1
Q ss_pred cceEEEEEEEccCCCCC--ccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCCC-ceEEEEEE
Q 004100 361 IGVLELGILNAQGLMPM--KTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDPC-TVITIGVF 432 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~--~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~~-~~l~v~v~ 432 (773)
...|.|+|+.|++++.. ++.+.....||||+|.+.| ...+|.+..++.||.|||+|.|.+..|. ..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 36899999999998621 1112234589999999855 3467877778999999999999999884 57999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEee
Q 004100 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476 (773)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 476 (773)
|+|..+ +|+++|+..||++.|..|- +..||.+.
T Consensus 488 D~D~~~--------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~ 520 (537)
T PLN02223 488 DYEVST--------ADAFCGQTCLPVSELIEGI---RAVPLYDE 520 (537)
T ss_pred ecCCCC--------CCcEEEEEecchHHhcCCc---eeEeccCC
Confidence 998765 7899999999999999985 67788654
No 220
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.96 E-value=8.3e-09 Score=111.50 Aligned_cols=242 Identities=18% Similarity=0.193 Sum_probs=155.1
Q ss_pred EEEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccC----CCCCceeEEEEEeccccccccCCCCCCceEEEccc
Q 004100 233 ALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVA----PNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEK 308 (773)
Q Consensus 233 ~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~----~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~ 308 (773)
..+|.++.+ .+||.|.+.|.........+.+.+.++|.+. ....+++|++...++++..... ...-+.+++
T Consensus 42 ~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~----~~~~l~~~~ 116 (529)
T KOG1327|consen 42 VGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG----LTGPLLLKP 116 (529)
T ss_pred ccceeeeec-cCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh----hhhhhhccc
Confidence 347888887 9999999999888777677899999998764 3567899999999998874311 111122222
Q ss_pred CcccccccccCCceeeEEEEEEEEccCcccCCCCCccCCCCCccccccccCccceEEEEEEEccCCCCCccCCCCCCCCc
Q 004100 309 HIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDA 388 (773)
Q Consensus 309 ~~~~~~~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dp 388 (773)
. .....|.+.+.+.- .. .. .....-.++|++|... |..+++||
T Consensus 117 ~---------~~~~~g~iti~aee--~~----------------------~~-~~~~~~~~~~~~ld~k---d~f~ksd~ 159 (529)
T KOG1327|consen 117 G---------KNAGSGTITISAEE--DE----------------------SD-NDVVQFSFRAKNLDPK---DFFSKSDP 159 (529)
T ss_pred C---------ccCCcccEEEEeec--cc----------------------cc-CceeeeeeeeeecCcc---cccccCCc
Confidence 1 11235665554431 00 00 1122223458888765 66789999
Q ss_pred EEEEEE--C-Ce---eeeeeeccCCCCCccccEEEEEEe-----CCCceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEe
Q 004100 389 YCVAKY--G-QK---WVRTRTIIDSPTPKWNEQYTWEVF-----DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIR 457 (773)
Q Consensus 389 yv~v~~--~-~~---~~~T~~~~~t~~P~wne~~~f~v~-----~~~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~ 457 (773)
|..+.- + +. .++|.+++++++|.|. .|..+.. ++...+.|.+||++.-+ ++++||++.-+
T Consensus 160 ~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~--------~~~~ig~~~tt 230 (529)
T KOG1327|consen 160 YLEFYKRVDDGSTQMLYRTEVVKNTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNG--------KHDLIGKFQTT 230 (529)
T ss_pred ceEEEEecCCCceeeccccceeccCCCCccc-ccccchhhhcccCCCCceEEEEeccCCCC--------CcCceeEeccc
Confidence 999854 2 22 3799999999999997 4555444 34678999999998764 78999999999
Q ss_pred cCccccCCeEEeeEEeEeecCCCcc----cccEEEEE-----------------EEEeecchhhhhhhccCCCCCcc-cc
Q 004100 458 LSTLETDRVYTHSYPLLVLYPNGVK----KMGEIHLA-----------------VRFTCSSLLNMMHMYSQPLLPKM-HY 515 (773)
Q Consensus 458 l~~l~~~~~~~~~~~L~~~~~~g~~----~~G~v~l~-----------------~~~~~~~~~~~~~~~~~~~~p~~-~~ 515 (773)
+.++.. ......+++.+...+..+ ..|.+.+. .+...+.+..+.+.++.|..|.+ ||
T Consensus 231 ~~~~~~-~~~~~~~~~~~~~~~~~~k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~~sSLHy 309 (529)
T KOG1327|consen 231 LSELQE-PGSPNQIMLINPKKKAKKKSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRNPSSLHY 309 (529)
T ss_pred HHHhcc-cCCcccccccChhhhhhhhcccccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCCCCccee
Confidence 999864 111233444433332211 13443321 11122224556667778887777 89
Q ss_pred ccccchhhhHH
Q 004100 516 LHPLTVSQLDS 526 (773)
Q Consensus 516 ~~~~~~~~~~~ 526 (773)
..|...++++.
T Consensus 310 i~p~~~N~Y~~ 320 (529)
T KOG1327|consen 310 IDPHQPNPYEQ 320 (529)
T ss_pred cCCCCCCHHHH
Confidence 99977777663
No 221
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.95 E-value=4.6e-09 Score=117.00 Aligned_cols=116 Identities=26% Similarity=0.318 Sum_probs=93.7
Q ss_pred eEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEE
Q 004100 38 QYLYVRVVKAKDLPPK------DVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVK 106 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~------d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~ 106 (773)
..|.|+|+.|.+++.. +.....||||+|.+-| .+.+|++..++.||+|||+|.|.+..++-..|+|.|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 4799999999987421 2223579999999965 3578998889999999999999987766789999999
Q ss_pred eCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCce-eeEEEEEEEE
Q 004100 107 DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWM 161 (773)
Q Consensus 107 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~ 161 (773)
|+|.. +|+++|+..+++..|..+ -+.++|.+..|... ...|.+++++
T Consensus 549 d~d~~~~ddfiGQ~~lPv~~Lr~G--------yR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 549 EHDINEKDDFGGQTCLPVSEIRQG--------IHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred ECCCCCCCCEEEEEEcchHHhhCc--------cceEeccCCCcCCCCCCeeEEEEEe
Confidence 99987 999999999999999865 25679999888753 3466666654
No 222
>PLN02952 phosphoinositide phospholipase C
Probab=98.95 E-value=9.5e-09 Score=114.79 Aligned_cols=120 Identities=23% Similarity=0.283 Sum_probs=93.4
Q ss_pred cceEEEEEEEccCCCCCcc---CCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCC-CceEEEEE
Q 004100 361 IGVLELGILNAQGLMPMKT---KDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGV 431 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~---~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v 431 (773)
...|.|.|+.|++++.-.. .+.....||||+|.+-| ...+|+++.++.||.|||+|.|++..| -..+.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 3689999999999853111 12223469999998843 457999999999999999999999987 46899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcccccEEEEEEEEe
Q 004100 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~ 494 (773)
+|+|..+ .++++|+..||++.|..|- +|+||.+. .|. ..+.+.|-++|.
T Consensus 549 ~D~D~~~--------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~--~G~-~l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSE--------KDDFGGQTCLPVSELRPGI---RSVPLHDK--KGE-KLKNVRLLMRFI 597 (599)
T ss_pred EecCCCC--------CCCeEEEEEcchhHhcCCc---eeEeCcCC--CCC-CCCCEEEEEEEE
Confidence 9998765 7899999999999999986 58899653 342 335667777764
No 223
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.91 E-value=1e-08 Score=114.17 Aligned_cols=115 Identities=25% Similarity=0.387 Sum_probs=91.9
Q ss_pred eEEEEEEEEeecCC--CC----CCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEE
Q 004100 38 QYLYVRVVKAKDLP--PK----DVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVK 106 (773)
Q Consensus 38 ~~L~V~v~~a~~L~--~~----d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~ 106 (773)
..|.|+|+.|.+++ .. +.....||||+|.+.| .+.+|+++.++.||+|||+|.|.+..++-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 47999999998853 11 1234579999999965 4678999988899999999999987666789999999
Q ss_pred eCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCcee-eEEEEEEE
Q 004100 107 DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVR-GELMLAVW 160 (773)
Q Consensus 107 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~-G~i~l~~~ 160 (773)
|+|.. +++++|++.+++..|..+ -+.++|.+..|.... ..|.+.+.
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~G--------yR~V~L~~~~g~~l~~a~Lfv~~~ 579 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQG--------IRAFPLHSRKGEKYKSVKLLVKVE 579 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCc--------cceEEccCCCcCCCCCeeEEEEEE
Confidence 99887 899999999999999865 356799998876533 35555554
No 224
>PLN02228 Phosphoinositide phospholipase C
Probab=98.88 E-value=1.5e-08 Score=112.48 Aligned_cols=118 Identities=22% Similarity=0.291 Sum_probs=95.6
Q ss_pred eEEEEEEEEeecCCC---C---CCCCCCCcEEEEEECC-----eeeeeeccCCCCCCee-ecEEEEEecCCCCceEEEEE
Q 004100 38 QYLYVRVVKAKDLPP---K---DVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEW-NQVFAFSKDRIQSSVLEVTV 105 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~---~---d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~W-nE~f~f~v~~~~~~~l~i~V 105 (773)
..|.|+|++|.+|+. . +.....||||+|.+-| .+++|+++.++.||+| ||+|.|.+..+.-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 369999999998732 1 1223479999999865 3578999988899999 99999998766678999999
Q ss_pred EeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCce-eeEEEEEEEEec
Q 004100 106 KDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWMGT 163 (773)
Q Consensus 106 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~~~ 163 (773)
+|.|.. +|+++|++.+++..|..+ -+.++|.+..|+.. .+.|.+.+.+.+
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~G--------YR~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSG--------VRAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCC--------eeEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 999877 899999999999999765 36779999988764 356888876653
No 225
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.82 E-value=2.1e-08 Score=111.46 Aligned_cols=116 Identities=22% Similarity=0.435 Sum_probs=94.4
Q ss_pred EEEEEEEEeecCCCC-CC---CCCCCcEEEEEECC-----eeeeeecc-CCCCCCeeecEEEEEecCCCCceEEEEEEeC
Q 004100 39 YLYVRVVKAKDLPPK-DV---TGSCDPYVEVKMGN-----YKGTTRHF-EKKTNPEWNQVFAFSKDRIQSSVLEVTVKDK 108 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~-d~---~~~~dpyv~v~~~~-----~~~~T~~~-~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~ 108 (773)
.|.|+|+.|.++... +. ...+||||.|++-| ...+|+++ .++-||.|+|+|+|.+..+.-..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 799999999976533 22 25689999999977 35789955 6789999999999999877778999999999
Q ss_pred CCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCce-eeEEEEEEEEe
Q 004100 109 DFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWMG 162 (773)
Q Consensus 109 ~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~~ 162 (773)
|.. +|+|+|+.++++..|..+- +-++|.+..|+.. ...|.+.+.+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~Gy--------RhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGY--------RHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred CCCCcccccceeeccHHHhhCce--------eeeeecCCCCccccceeEEEEEEEe
Confidence 998 8999999999999998652 4568999887643 36677776553
No 226
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.81 E-value=4e-08 Score=109.59 Aligned_cols=105 Identities=17% Similarity=0.261 Sum_probs=84.2
Q ss_pred cceEEEEEEEccCCCCCcc---CCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCC-CceEEEEE
Q 004100 361 IGVLELGILNAQGLMPMKT---KDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGV 431 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~---~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v 431 (773)
...|.|+|+.+++++.... .+.....||||+|.+-| ...+|+++.++.||.|||+|.|++..| -..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 3679999999999753211 12233579999998843 347899888999999999999999987 47899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEee
Q 004100 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 476 (773)
+|+|..+ +|+++|+..||++.|..|- +..+|.+.
T Consensus 548 ~d~d~~~--------~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~ 581 (598)
T PLN02230 548 HEHDINE--------KDDFGGQTCLPVSEIRQGI---HAVPLFNR 581 (598)
T ss_pred EECCCCC--------CCCEEEEEEcchHHhhCcc---ceEeccCC
Confidence 9998764 7999999999999999884 46778653
No 227
>PLN02228 Phosphoinositide phospholipase C
Probab=98.79 E-value=5.8e-08 Score=107.89 Aligned_cols=122 Identities=17% Similarity=0.213 Sum_probs=92.2
Q ss_pred cceEEEEEEEccCCCC---CccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCcc-ccEEEEEEeCC-CceEEEE
Q 004100 361 IGVLELGILNAQGLMP---MKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKW-NEQYTWEVFDP-CTVITIG 430 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~---~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w-ne~~~f~v~~~-~~~l~v~ 430 (773)
...|+|+|+.|++|+. .+..+.....||||+|.+.| ..+||++++++.||.| ||.|.|.+..| -..|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3579999999999742 11112233489999998843 3479999998999999 99999999987 4789999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcc-cccEEEEEEEEee
Q 004100 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-KMGEIHLAVRFTC 495 (773)
Q Consensus 431 v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~v~l~~~~~~ 495 (773)
|+|+|..+ .|+++|+..||++.|..|- +.++|.+. +|.. ...++-+.+.+.+
T Consensus 510 V~D~d~~~--------~d~figq~~lPv~~Lr~GY---R~VpL~~~--~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 510 VQDYDNDT--------QNDFAGQTCLPLPELKSGV---RAVRLHDR--AGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEeCCCCC--------CCCEEEEEEcchhHhhCCe---eEEEccCC--CCCCCCCeEEEEEEEEcC
Confidence 99998765 7899999999999998874 46688654 3432 2355666666644
No 228
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.78 E-value=6.9e-08 Score=107.61 Aligned_cols=105 Identities=18% Similarity=0.258 Sum_probs=83.8
Q ss_pred cceEEEEEEEccCCCC--Cc-cCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEeCC-CceEEEEE
Q 004100 361 IGVLELGILNAQGLMP--MK-TKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGV 431 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~--~~-~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v 431 (773)
...|.|+|+.+++++. .+ ..+.....||||+|.+.| ...||+++.++.||.|||.|.|.+..| -..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 3679999999998531 11 112234589999999843 457999999999999999999999987 47899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEee
Q 004100 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 476 (773)
+|+|..+ .|+++|+..||++.|..|- +..||.+.
T Consensus 531 ~d~D~~~--------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~ 564 (581)
T PLN02222 531 HEYDMSE--------KDDFGGQTCLPVWELSQGI---RAFPLHSR 564 (581)
T ss_pred EECCCCC--------CCcEEEEEEcchhhhhCcc---ceEEccCC
Confidence 9998754 7899999999999999884 46677653
No 229
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.76 E-value=2.7e-08 Score=84.01 Aligned_cols=86 Identities=21% Similarity=0.334 Sum_probs=71.2
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-eeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 004100 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~ 442 (773)
|.|.|..|+|+...++....+.+||||.+++++. +.||++ +.||.|||.|.|+| +-...+.+.|||...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~~------ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKGG------ 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCCC------
Confidence 5789999999987643224577999999999887 789998 59999999999999 568899999999843
Q ss_pred CCCCCCCccEEEEEecCccc
Q 004100 443 AGGARDSRIGKVRIRLSTLE 462 (773)
Q Consensus 443 ~~~~~d~~lG~~~i~l~~l~ 462 (773)
+..-.||-.=|.++++.
T Consensus 71 ---~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 71 ---DQPVPVGLLWLRLSDIA 87 (109)
T ss_pred ---CeecceeeehhhHHHHH
Confidence 14678898888888884
No 230
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.75 E-value=6.7e-08 Score=107.59 Aligned_cols=118 Identities=20% Similarity=0.347 Sum_probs=90.9
Q ss_pred eEEEEEEEccCCCCCccCC-CCCCCCcEEEEEECCe-----eeeeeec-cCCCCCccccEEEEEEeCC-CceEEEEEEeC
Q 004100 363 VLELGILNAQGLMPMKTKD-GRGTTDAYCVAKYGQK-----WVRTRTI-IDSPTPKWNEQYTWEVFDP-CTVITIGVFDN 434 (773)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~-~~~~~dpyv~v~~~~~-----~~~T~~~-~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~ 434 (773)
.|.|.|+.++|++...... .+..+||||.|++.|. ..+|+++ .++-||.|+|+|+|++..| -.-|++.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999887643222 2346999999998653 4799955 4688999999999999998 56899999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcc-cccEEEEEEEE
Q 004100 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-KMGEIHLAVRF 493 (773)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~v~l~~~~ 493 (773)
|..+ +|+|+|+..||+..|..|- +.+||.+. .|.. ...++-+.+.+
T Consensus 697 d~~~--------~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~--~G~~~~~asLfv~i~~ 743 (746)
T KOG0169|consen 697 DYIG--------KDDFIGQTTLPVSELRQGY---RHVPLLSR--EGEALSSASLFVRIAI 743 (746)
T ss_pred CCCC--------cccccceeeccHHHhhCce---eeeeecCC--CCccccceeEEEEEEE
Confidence 9876 8999999999999999884 56778664 3332 23445555544
No 231
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.73 E-value=4.3e-09 Score=114.30 Aligned_cols=126 Identities=32% Similarity=0.560 Sum_probs=106.0
Q ss_pred ccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------e------------------eeeeeccCCCC
Q 004100 33 LVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-------------Y------------------KGTTRHFEKKT 81 (773)
Q Consensus 33 ~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-------------~------------------~~~T~~~~~~~ 81 (773)
...+...|.|.+.+|+||.+.|.+|-+|||+...+-. + .+-|.+.++|+
T Consensus 109 ~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TL 188 (1103)
T KOG1328|consen 109 NKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTL 188 (1103)
T ss_pred CCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccC
Confidence 3456677899999999999999999999999887621 0 12488889999
Q ss_pred CCeeecEEEEEecCCCCceEEEEEEeCCC------------------------------------C-CCeeeEEEEEEcC
Q 004100 82 NPEWNQVFAFSKDRIQSSVLEVTVKDKDF------------------------------------V-KDDFMGRVLFDLN 124 (773)
Q Consensus 82 nP~WnE~f~f~v~~~~~~~l~i~V~d~~~------------------------------------~-~d~~lG~~~i~l~ 124 (773)
||.|+|.|.|.+++.+.+.+.+.+||+|. . .|||+|.+.|+|+
T Consensus 189 nPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~ 268 (1103)
T KOG1328|consen 189 NPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLA 268 (1103)
T ss_pred CcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchh
Confidence 99999999999999999999999999832 1 4899999999999
Q ss_pred ccCCCCCCCCCCcCeEEEeeeCCC-CceeeEEEEEEEEecc
Q 004100 125 EIPKRVPPDSPLAPQWYRLEDRKG-DKVRGELMLAVWMGTQ 164 (773)
Q Consensus 125 ~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~~~~~~~ 164 (773)
++... ..++||+|+.++. .+.+|.+++.+|+.+.
T Consensus 269 EiP~~------Gld~WFkLepRS~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 269 EIPPD------GLDQWFKLEPRSDKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred cCCcc------hHHHHhccCcccccccccceEEEEEEEeee
Confidence 99854 3689999999874 4678999999999864
No 232
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.71 E-value=2.6e-08 Score=105.48 Aligned_cols=124 Identities=28% Similarity=0.463 Sum_probs=102.0
Q ss_pred eeEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeeeeccCCCCCCeeecE-EEEEec--CCCCceEEEEEEeCCCC-
Q 004100 37 MQYLYVRVVKAKDLPPKDV-TGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQV-FAFSKD--RIQSSVLEVTVKDKDFV- 111 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d~-~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~-f~f~v~--~~~~~~l~i~V~d~~~~- 111 (773)
+|.|.|+|+.||+|+.+|. +...|.||++++++..++|.+..+++||.||.. |.|.|+ ++++++|.|.+.|+|..
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 3678999999999999986 457799999999999999999999999999955 888884 56789999999999998
Q ss_pred CCeeeEEEEEEcCccCCCCC-----CCCCCcCeEEEeeeCCCCceeeEEEEEEEE
Q 004100 112 KDDFMGRVLFDLNEIPKRVP-----PDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (773)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~-----~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (773)
.+|-||.+.|++..|..... ..+.+...|+++.+.-- ..+|+|.+-+.+
T Consensus 82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih-girgeinvivkv 135 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH-GIRGEINVIVKV 135 (1169)
T ss_pred cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc-cccceeEEEEEE
Confidence 89999999999998875321 12456778999988641 246888776644
No 233
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.64 E-value=8.7e-08 Score=105.54 Aligned_cols=116 Identities=23% Similarity=0.357 Sum_probs=88.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----ee-eeeeccCCCCCCeee-cEEEEEecCCCCceEEEEEEeCCC
Q 004100 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YK-GTTRHFEKKTNPEWN-QVFAFSKDRIQSSVLEVTVKDKDF 110 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~-~~T~~~~~~~nP~Wn-E~f~f~v~~~~~~~l~i~V~d~~~ 110 (773)
-.|.|.|+.||.|+... .+.+.|||+|.+-| .+ ++|.++.+++||+|| |+|+|.+.+++-..|+|.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 36899999999999554 46778999999866 23 455566899999999 999999999989999999999999
Q ss_pred C-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCc-eeeEEEEEEEEe
Q 004100 111 V-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK-VRGELMLAVWMG 162 (773)
Q Consensus 111 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~~ 162 (773)
+ ...|||++++++..+..+- +-.+|.+.-.+. ....|.+.+...
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf--------RsVpLkN~ySEdlELaSLLv~i~m~ 1189 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF--------RSVPLKNGYSEDLELASLLVFIEMR 1189 (1267)
T ss_pred cCCcceeeeeecchhhhhccc--------eeeecccCchhhhhhhhheeeeEec
Confidence 9 5669999999999987652 334666543221 124455554443
No 234
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.63 E-value=1.4e-08 Score=110.49 Aligned_cols=104 Identities=29% Similarity=0.506 Sum_probs=89.0
Q ss_pred cCcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeccCCCCCCeeecEEEEEecC
Q 004100 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-------KGTTRHFEKKTNPEWNQVFAFSKDR 95 (773)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~-------~~~T~~~~~~~nP~WnE~f~f~v~~ 95 (773)
|...+...|+.-.+ .|.|.|+.|+++.+-|.+|.+||||.|.+++. .++|++..+|+||+|+|+|+|.|..
T Consensus 934 g~lsvr~~y~~n~q--~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~ 1011 (1103)
T KOG1328|consen 934 GVLSVRAYYNGNAQ--TLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPP 1011 (1103)
T ss_pred CceEEEEEeecccc--chhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCc
Confidence 33455666665554 89999999999999999999999999999872 4689999999999999999999953
Q ss_pred C----CCceEEEEEEeCCCC-CCeeeEEEEEEcCccCC
Q 004100 96 I----QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPK 128 (773)
Q Consensus 96 ~----~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~ 128 (773)
. ....|-|+|.|+|.. .+||-|++.+.|.++..
T Consensus 1012 e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1012 EPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred cccccccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 2 256789999999998 99999999999998874
No 235
>PLN02352 phospholipase D epsilon
Probab=98.59 E-value=3.1e-07 Score=104.45 Aligned_cols=121 Identities=21% Similarity=0.246 Sum_probs=92.5
Q ss_pred ceEEEEEEEccCCCCCccC-C-CCCCCCcEEEEEECCee-eeeeeccCCCCCccccEEEEEEeCCC-ceEEEEEEeCCCC
Q 004100 362 GVLELGILNAQGLMPMKTK-D-GRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPC-TVITIGVFDNCHL 437 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~-~-~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~-~~l~v~v~d~~~~ 437 (773)
|.|.++|++|+-+...-.. . .....||||.|.+++.+ .|| .+..||.|||.|.+++..+. ..+.+.|.|.
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~--- 83 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK--- 83 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC---
Confidence 8899999999832211000 0 01223999999998866 588 55669999999999999987 7899999982
Q ss_pred CCCCCCCCCCCCccEEEEEecCccccCCe-EEeeEEeEeecCCCcccccEEEEEEEEeecchh
Q 004100 438 HGGDKAGGARDSRIGKVRIRLSTLETDRV-YTHSYPLLVLYPNGVKKMGEIHLAVRFTCSSLL 499 (773)
Q Consensus 438 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g~~~~G~v~l~~~~~~~~~~ 499 (773)
-.+||++.||..++..|.. +++|+|+.+...+.. +..++++.++|.+...-
T Consensus 84 ----------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 84 ----------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPN-PELKLRFMLWFRPAELE 135 (758)
T ss_pred ----------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCC-CCCEEEEEEEEEEhhhC
Confidence 4699999999999988865 999999987654333 22589999999887543
No 236
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.58 E-value=6.6e-08 Score=110.49 Aligned_cols=123 Identities=27% Similarity=0.386 Sum_probs=101.3
Q ss_pred CCCCCCccc-CcceeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecE
Q 004100 15 PHLGGGKIT-GDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQV 88 (773)
Q Consensus 15 ~~~~~~~~~-~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~ 88 (773)
|+..+|+|| ..+++.+|. -|.|+|.|.-|++|+--..+..+||||+.++.+ -+.||+++.+|.||.|||.
T Consensus 1504 ps~~p~~iggqV~LsIsY~----~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~ 1579 (1639)
T KOG0905|consen 1504 PSRNPGEIGGQVKLSISYN----NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEM 1579 (1639)
T ss_pred CCCCccccCceEEEEEEEc----CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhh
Confidence 566677877 448888887 468999999999996555467899999999976 3678999999999999999
Q ss_pred EEEE---ecCCCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeC
Q 004100 89 FAFS---KDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (773)
Q Consensus 89 f~f~---v~~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (773)
+... ...+....|.+.||..+.. .+.++|.+.++|.++...++ ...||+|...
T Consensus 1580 LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE-----~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1580 LVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKE-----SVGWYNLGAC 1636 (1639)
T ss_pred eeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhh-----hcceeecccc
Confidence 8776 3445568899999998888 88999999999999987653 3489998653
No 237
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.58 E-value=2.5e-07 Score=101.97 Aligned_cols=99 Identities=18% Similarity=0.321 Sum_probs=81.9
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeee-eeeccCCCCCccc-cEEEEEEeCC-CceEEEEEEe
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVR-TRTIIDSPTPKWN-EQYTWEVFDP-CTVITIGVFD 433 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~-T~~~~~t~~P~wn-e~~~f~v~~~-~~~l~v~v~d 433 (773)
-.|.|.|+.||.|+. .++|..-|||+|++-| .+++ |.++.+.+||+|| |.|+|.+.+| -.-|++.|+|
T Consensus 1065 ~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence 578999999999984 5667788999998844 3344 4455679999999 9999999998 5789999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEe
Q 004100 434 NCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (773)
Q Consensus 434 ~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 475 (773)
.|.++ ...|||++..|+..+..|- +..||.+
T Consensus 1141 eDmfs--------~~~FiaqA~yPv~~ik~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1141 EDMFS--------DPNFLAQATYPVKAIKSGF---RSVPLKN 1171 (1267)
T ss_pred ccccC--------Ccceeeeeecchhhhhccc---eeeeccc
Confidence 99997 4569999999999998873 5677765
No 238
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.56 E-value=6.2e-07 Score=97.25 Aligned_cols=178 Identities=20% Similarity=0.236 Sum_probs=126.7
Q ss_pred eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-----CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeee
Q 004100 71 KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (773)
Q Consensus 71 ~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (773)
..+|.++.+.+||.|-+.|.+...-...+.+++.++|.+.. ..+|+|++...+..+....... . .|..
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~-----~--~l~~ 114 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLT-----G--PLLL 114 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhh-----h--hhhc
Confidence 45899999999999999998887555578999999997653 7899999999999988653211 1 1211
Q ss_pred CCCC-ceeeEEEEEEEEeccCCCCCCcccccccccccccccccccccceeccCceEEEEEEEEEeecCCCCCCCCCCCcE
Q 004100 146 RKGD-KVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVY 224 (773)
Q Consensus 146 ~~~~-~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~~~~~~~dpy 224 (773)
..+. ...|+|.+.+.-. .+. .....-..+|++|..++..+++|||
T Consensus 115 ~~~~~~~~g~iti~aee~-----------~~~-----------------------~~~~~~~~~~~~ld~kd~f~ksd~~ 160 (529)
T KOG1327|consen 115 KPGKNAGSGTITISAEED-----------ESD-----------------------NDVVQFSFRAKNLDPKDFFSKSDPY 160 (529)
T ss_pred ccCccCCcccEEEEeecc-----------ccc-----------------------CceeeeeeeeeecCcccccccCCcc
Confidence 1111 1246666654110 000 0122223558999999999999999
Q ss_pred EEEEEC--C----EEEEeecccCCCCCccccceEEEEeeC----CCCCeEEEEEEEccCCCCCceeEEEEEeccccc
Q 004100 225 VKAQLG--N----QALRTRVSASRTINPMWNEDLMFVAAE----PFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVD 291 (773)
Q Consensus 225 v~v~l~--~----~~~kT~~~~~~t~nP~wne~f~f~~~~----~~~~~l~i~V~d~~~~~~d~~iG~~~i~L~~l~ 291 (773)
..+.-- . ..++|.++++ +++|.|.. |...... ..+..+.+.+||++..+++++||++..+++++.
T Consensus 161 l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 161 LEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred eEEEEecCCCceeeccccceecc-CCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence 988653 1 3578999887 99999985 3333322 234578899999999999999999999999886
No 239
>PLN02352 phospholipase D epsilon
Probab=98.48 E-value=9.4e-07 Score=100.62 Aligned_cols=117 Identities=21% Similarity=0.352 Sum_probs=91.0
Q ss_pred eEEEEEEEEeecCCCC----CC-CCCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC
Q 004100 38 QYLYVRVVKAKDLPPK----DV-TGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV 111 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~----d~-~~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~ 111 (773)
|.|.++|.+|+-+... +. ....||||.|.+++. ..|| .+..||.|||+|.+.+.......+.|.|+|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT---- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----
Confidence 6899999999843221 11 112399999999984 5677 556799999999999976555679999999
Q ss_pred CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceee-EEEEEEEEeccC
Q 004100 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRG-ELMLAVWMGTQA 165 (773)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G-~i~l~~~~~~~~ 165 (773)
+..+||.+.+++.++..+. .....||++.+..|+...| .|+++++|.+..
T Consensus 83 ~~~~ig~~~~p~~~~~~g~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 83 KCSILGRFHIQAHQIVTEA----SFINGFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred CCeEEEEEEEEHHHhhCCC----cccceEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 3679999999999998763 2368999999988765555 899999988643
No 240
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.46 E-value=1.7e-07 Score=81.44 Aligned_cols=110 Identities=25% Similarity=0.346 Sum_probs=81.3
Q ss_pred EEEEEEEccCCCCCccC------C----CCCCCCcEEEEEE----CCeeeeeeeccCCCCCccccEEEEEEe--------
Q 004100 364 LELGILNAQGLMPMKTK------D----GRGTTDAYCVAKY----GQKWVRTRTIIDSPTPKWNEQYTWEVF-------- 421 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~------~----~~~~~dpyv~v~~----~~~~~~T~~~~~t~~P~wne~~~f~v~-------- 421 (773)
+.|.|+||.||.....+ + ..-..++||++.+ +++..+|+++.++..|.|+..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46889999999753221 1 1223689999985 567789999999999999999999876
Q ss_pred CC--------CceEEEEEEeCCCCCCCCC--CCCCCCCccEEEEEecCccccC-CeEEeeEEe
Q 004100 422 DP--------CTVITIGVFDNCHLHGGDK--AGGARDSRIGKVRIRLSTLETD-RVYTHSYPL 473 (773)
Q Consensus 422 ~~--------~~~l~v~v~d~~~~~~~~~--~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L 473 (773)
+. ...+.++||..+.-+.++. ....+|-.||.+.||+.+|... .-+.+|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 21 4589999999876543331 1223788999999999998544 446789885
No 241
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=98.42 E-value=0.00018 Score=75.71 Aligned_cols=244 Identities=18% Similarity=0.234 Sum_probs=156.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEec-------CCCCceEEEEEEeCCCC-
Q 004100 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKD-------RIQSSVLEVTVKDKDFV- 111 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~-------~~~~~~l~i~V~d~~~~- 111 (773)
+.|+|++|+|.+... ...-.+..+++++...|-.+..+..|.||..+.|.++ ..+..+|.+++|..+..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 679999999998763 3466899999999999999999999999999999873 23568899999998833
Q ss_pred -CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC--CceeeEEEEEEEEeccCCCCCCcc----ccccccccc-cc
Q 004100 112 -KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG--DKVRGELMLAVWMGTQADEAFPEA----WHSDAATVT-GI 183 (773)
Q Consensus 112 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~~~~~~~~d~~~~~~----~~~~~~~~~-~~ 183 (773)
..+.+|.+.++|+...............||+|...++ ++.+-+|.+.+.+.........+. +........ ..
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~ 158 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP 158 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence 8899999999999982211111346789999998843 334678888888765443211000 000000000 00
Q ss_pred cc---ccc--c-------ccc--eec---cCceEEEEEEEEEeecCCCCC----C--CCCCCcEEEEEECCEEEEeeccc
Q 004100 184 EG---LAN--I-------RSK--VYL---SPKLWYLRVNVIEAQDLQPTD----K--GRFPEVYVKAQLGNQALRTRVSA 240 (773)
Q Consensus 184 ~~---~~~--~-------~~~--~~~---~p~~~~L~V~v~~a~~L~~~~----~--~~~~dpyv~v~l~~~~~kT~~~~ 240 (773)
.. ... . ..- ... .-..+.|.|++..|++|...- . .+....|....+-+....|..-+
T Consensus 159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~ 238 (340)
T PF12416_consen 159 PPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFK 238 (340)
T ss_pred ccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeecc
Confidence 00 000 0 000 001 234678999999999987652 1 12345666777766666666555
Q ss_pred CCCCCcccc-ceEE-EEeeCC---------CCCeEEEEEEEccCCCCCceeEEEEEecccccc
Q 004100 241 SRTINPMWN-EDLM-FVAAEP---------FEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDK 292 (773)
Q Consensus 241 ~~t~nP~wn-e~f~-f~~~~~---------~~~~l~i~V~d~~~~~~d~~iG~~~i~L~~l~~ 292 (773)
. ..+|.|- |.-. +.+... ....|.|.++. .+..||.+.+++..+..
T Consensus 239 ~-l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 239 S-LSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQPLLP 295 (340)
T ss_pred c-cCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhhccC
Confidence 4 6777654 2222 444321 12356666665 36789999999999864
No 242
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=98.41 E-value=1.7e-07 Score=86.16 Aligned_cols=101 Identities=19% Similarity=0.276 Sum_probs=75.6
Q ss_pred hhhHHHHHHHHHHHHHhcccCCCCChHHHHHHHhcCC----Ccccccc--chhhHHHHHHHHHHHHHHHHHHhhhhcccC
Q 004100 522 SQLDSLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVG----SHMWSMR--RSKANFFRIMGVLSGIIAVGKWFDQICNWK 595 (773)
Q Consensus 522 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~s~~--~~~~n~~Rl~~~~~~~~~~~~~i~~l~~W~ 595 (773)
.+++.+|.+...++..+++++|....+|+.|+++..+ .+..+++ +++.-..|++.+++.+...+++++.+++|+
T Consensus 13 ~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWr 92 (156)
T PF08372_consen 13 LWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWR 92 (156)
T ss_pred HhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3445556666666778889999888999988887632 2334333 888889999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHccchhHHHHHH
Q 004100 596 NPITTVLIHILFIILVLYPELILPTVFL 623 (773)
Q Consensus 596 ~p~~t~~~~~~~~~~~~~~~l~~p~~~l 623 (773)
+|.+|.++++++++++ ...+++|+=.+
T Consensus 93 dP~aT~lf~~~clv~a-vvly~vP~r~l 119 (156)
T PF08372_consen 93 DPRATALFVVFCLVAA-VVLYFVPFRVL 119 (156)
T ss_pred CccHHHHHHHHHHHHH-HHHHHhhHHHH
Confidence 9999999976665544 33445555443
No 243
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.31 E-value=7.9e-07 Score=101.98 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=85.3
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----eeeeeeeccCCCCCccccEEEEEEe---C-CCceEEEEEE
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVF---D-PCTVITIGVF 432 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~---~-~~~~l~v~v~ 432 (773)
|.|.|.|..|+||+.. ..+..+||||+..+-. .+.||+++.+|.||.|||...+.-. . ....|++.||
T Consensus 1524 ~~LtImV~H~K~L~~L---qdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVl 1600 (1639)
T KOG0905|consen 1524 GTLTIMVMHAKGLALL---QDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVL 1600 (1639)
T ss_pred ceEEEEhhhhcccccc---cCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeee
Confidence 8999999999999765 3346799999999943 2479999999999999999887622 1 1468999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004100 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
..+.+. .+.++|.+.|+|.++.-.+...+||+|-
T Consensus 1601 s~~~~~--------en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1601 SNGGLL--------ENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred ccccee--------eeeeeeeeecchhhcchhhhhcceeecc
Confidence 988765 7899999999999998877778999983
No 244
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=98.11 E-value=0.0015 Score=68.96 Aligned_cols=238 Identities=15% Similarity=0.198 Sum_probs=159.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeecccCCCCCccccceEEEEeeC-------CCCCeEEEEEEEcc-C
Q 004100 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAE-------PFEEHLILTVEDRV-A 273 (773)
Q Consensus 202 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~-------~~~~~l~i~V~d~~-~ 273 (773)
+.|.|++|++.+... ...-.|..+++++...|..+.. +..|.||....|.+.. .+...|++++|..+ .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 678999999998763 2467889999999999998876 9999999999998742 23557999999987 5
Q ss_pred CCCCceeEEEEEecccc-ccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEccCcccCC---------CCC
Q 004100 274 PNKDEVLGKCMIPLQYV-DKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLD---------EST 343 (773)
Q Consensus 274 ~~~d~~iG~~~i~L~~l-~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~~~~~~~~---------~~~ 343 (773)
.+..+.||.+.++|... ...........+||+|-.... +-.+..-++.+.+++........ +.+
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~------~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p 151 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS------KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAP 151 (340)
T ss_pred CCcceeccEEEEEccccccccccccccCCCeeEcccccc------ccccCCccEEEEEEEeccccccCCccccccccCCC
Confidence 67889999999999988 111223346789999987521 11233456777777654332100 011
Q ss_pred ccCC-------CCCcccc--c-------------cccCccceEEEEEEEccCCCCCccCC---CCCCCCcEEEEEECCee
Q 004100 344 HYSS-------DLRPTAK--Q-------------LWKSSIGVLELGILNAQGLMPMKTKD---GRGTTDAYCVAKYGQKW 398 (773)
Q Consensus 344 ~~~~-------~~~p~~~--~-------------~~~~~~g~l~v~v~~a~~L~~~~~~~---~~~~~dpyv~v~~~~~~ 398 (773)
...+ ...+... . ......-.|.|+|-.|+||..+-... ..+...-|....+-|..
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~ 231 (340)
T PF12416_consen 152 PRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND 231 (340)
T ss_pred cccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE
Confidence 1111 0001000 0 00123567889999999987652111 12335667777777778
Q ss_pred eeeeeccCCCCCccc-cEEE-EEEeCC----------CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccc
Q 004100 399 VRTRTIIDSPTPKWN-EQYT-WEVFDP----------CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE 462 (773)
Q Consensus 399 ~~T~~~~~t~~P~wn-e~~~-f~v~~~----------~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~ 462 (773)
..|..-+...+|.|- |.-. +.++.. ...|.|.++-. +..||.+.|++..+.
T Consensus 232 Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-------------~~~Lg~~~v~l~~Ll 294 (340)
T PF12416_consen 232 VTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-------------NQSLGSTSVPLQPLL 294 (340)
T ss_pred eEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-------------CcEEEEEEEEhhhcc
Confidence 888888888888773 3334 776632 34677777763 568999999999984
No 245
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.79 E-value=2.5e-05 Score=63.14 Aligned_cols=88 Identities=17% Similarity=0.281 Sum_probs=66.0
Q ss_pred EEEEEEeecCCCCCCCC-CCCcEEEEE--EC-CeeeeeeccCCCCCCeeecEEEEEe--cCCCCceEEEEEEeCCCCCCe
Q 004100 41 YVRVVKAKDLPPKDVTG-SCDPYVEVK--MG-NYKGTTRHFEKKTNPEWNQVFAFSK--DRIQSSVLEVTVKDKDFVKDD 114 (773)
Q Consensus 41 ~V~v~~a~~L~~~d~~~-~~dpyv~v~--~~-~~~~~T~~~~~~~nP~WnE~f~f~v--~~~~~~~l~i~V~d~~~~~d~ 114 (773)
.|+|++|++|.-....| .+.-|++=- +. ...+||....+..||+|+|+|.|.+ ..+..-.|.|.|+..-. +.+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~-RKe 80 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTP-RKR 80 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCC-ccc
Confidence 68999999997554332 233344422 23 2568899999999999999999987 45667789999998322 889
Q ss_pred eeEEEEEEcCccCCC
Q 004100 115 FMGRVLFDLNEIPKR 129 (773)
Q Consensus 115 ~lG~~~i~l~~l~~~ 129 (773)
.||.++++++++-.+
T Consensus 81 ~iG~~sL~l~s~gee 95 (103)
T cd08684 81 TIGECSLSLRTLSTQ 95 (103)
T ss_pred eeeEEEeecccCCHH
Confidence 999999999988643
No 246
>PLN02964 phosphatidylserine decarboxylase
Probab=97.71 E-value=5.1e-05 Score=86.22 Aligned_cols=89 Identities=21% Similarity=0.358 Sum_probs=73.7
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEE-EECCeeeeeeeccCCCCCccccEEEEEEeCC-CceEEEEEEeCCC
Q 004100 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVA-KYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCH 436 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v-~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~ 436 (773)
.-.|.+.+++++|+ | ...|+|+.+ .+|.+.+||++.++|+||+||+...|.|... ....++.|||++.
T Consensus 51 ~~~~~~~~~~~~~~----~------~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (644)
T PLN02964 51 DFSGIALLTLVGAE----M------KFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR 120 (644)
T ss_pred cccCeEEEEeehhh----h------ccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence 34589999999998 3 225887766 6788999999999999999999999998853 2336999999999
Q ss_pred CCCCCCCCCCCCCccEEEEEecCccccCC
Q 004100 437 LHGGDKAGGARDSRIGKVRIRLSTLETDR 465 (773)
Q Consensus 437 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 465 (773)
++ +++++|.+.++|.++...+
T Consensus 121 ~s--------~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 121 LS--------KNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred CC--------HHHhhhheeecHhhccHHH
Confidence 87 8999999999998886543
No 247
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.66 E-value=6.8e-05 Score=65.59 Aligned_cols=100 Identities=21% Similarity=0.362 Sum_probs=76.5
Q ss_pred EEEEEEEeecCCCCCC-------------CCCCCcEEEEEEC----CeeeeeeccCCCCCCeeecEEEEEec--------
Q 004100 40 LYVRVVKAKDLPPKDV-------------TGSCDPYVEVKMG----NYKGTTRHFEKKTNPEWNQVFAFSKD-------- 94 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~-------------~~~~dpyv~v~~~----~~~~~T~~~~~~~nP~WnE~f~f~v~-------- 94 (773)
|.|.|++|.+|+.... .--.|+||++.+. ++..+|+++.++-.|.|+-.++|...
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4577888888864311 1125899999953 36789999999999999999999853
Q ss_pred -------CCCCceEEEEEEeCCC----------C-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEe
Q 004100 95 -------RIQSSVLEVTVKDKDF----------V-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (773)
Q Consensus 95 -------~~~~~~l~i~V~d~~~----------~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (773)
-++...+.++||+... . +|-+||++.|++.+|..+ ......||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~----rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK----RSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc----ccCccccccC
Confidence 1346789999998743 1 678999999999999976 3457889875
No 248
>PLN02964 phosphatidylserine decarboxylase
Probab=97.65 E-value=6.7e-05 Score=85.31 Aligned_cols=90 Identities=16% Similarity=0.221 Sum_probs=76.1
Q ss_pred ccCceeEEEEEEEEeecCCCCCCCCCCCcE-EEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC
Q 004100 33 LVEQMQYLYVRVVKAKDLPPKDVTGSCDPY-VEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV 111 (773)
Q Consensus 33 ~~~~~~~L~V~v~~a~~L~~~d~~~~~dpy-v~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~ 111 (773)
.++=.|.+.+++++|+ ++ ..||| +.+++|.+.++|.+.++|.||+|||...|.+.........|.|||.+.+
T Consensus 49 ~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL 121 (644)
T ss_pred cccccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence 4455689999999997 33 25886 6777888999999999999999999999999765556679999999999
Q ss_pred -CCeeeEEEEEEcCccCCC
Q 004100 112 -KDDFMGRVLFDLNEIPKR 129 (773)
Q Consensus 112 -~d~~lG~~~i~l~~l~~~ 129 (773)
.++++|.++++|.++..+
T Consensus 122 s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CHHHhhhheeecHhhccHH
Confidence 999999999999888754
No 249
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.0002 Score=73.75 Aligned_cols=108 Identities=19% Similarity=0.262 Sum_probs=86.4
Q ss_pred CccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-CC----eeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEe
Q 004100 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-GQ----KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFD 433 (773)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-~~----~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d 433 (773)
...|.+.|.|++|++|.... ..+..++|||+|.+ ++ .+.+|+...+|++|-+.++..|.-.-+...|.+.||-
T Consensus 266 d~~g~l~vEii~ar~l~~k~--~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~g 343 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKP--GSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWG 343 (405)
T ss_pred cccCceeEEEEecccccccC--CcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEec
Confidence 45689999999999998742 22347999999987 32 2368999999999999888888777778899999994
Q ss_pred -CCCCCCCCCCCCCCCCccEEEEEecCccccCC-eEEeeEEeEee
Q 004100 434 -NCHLHGGDKAGGARDSRIGKVRIRLSTLETDR-VYTHSYPLLVL 476 (773)
Q Consensus 434 -~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~ 476 (773)
...+ +.+.|+|-+.|-+.++.-.. ....||+|...
T Consensus 344 dygRm--------d~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 344 DYGRM--------DHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccccc--------chHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 4333 27899999999999997665 78899999654
No 250
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.26 E-value=0.00037 Score=56.53 Aligned_cols=87 Identities=16% Similarity=0.378 Sum_probs=63.1
Q ss_pred EEEEEEeecCCCCCC-CCCCCcEEEEEEC--C-EEEEeecccCCCCCccccceEEEEeeC--CCCCeEEEEEEEccCCCC
Q 004100 203 RVNVIEAQDLQPTDK-GRFPEVYVKAQLG--N-QALRTRVSASRTINPMWNEDLMFVAAE--PFEEHLILTVEDRVAPNK 276 (773)
Q Consensus 203 ~V~v~~a~~L~~~~~-~~~~dpyv~v~l~--~-~~~kT~~~~~~t~nP~wne~f~f~~~~--~~~~~l~i~V~d~~~~~~ 276 (773)
-|++++|++|.-... ...+.-|++-.+. + -..||+.. .+..||.|+|+|.|.+.. ..+-.|.|.|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~r-rgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAK-EGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhh-cCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 478899999864332 2345567765553 2 35677764 459999999999998754 334577888887 5678
Q ss_pred CceeEEEEEecccccc
Q 004100 277 DEVLGKCMIPLQYVDK 292 (773)
Q Consensus 277 d~~iG~~~i~L~~l~~ 292 (773)
.+.||.|.+.+.++..
T Consensus 79 Ke~iG~~sL~l~s~ge 94 (103)
T cd08684 79 KRTIGECSLSLRTLST 94 (103)
T ss_pred cceeeEEEeecccCCH
Confidence 8999999999998864
No 251
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.13 E-value=0.0003 Score=73.03 Aligned_cols=117 Identities=19% Similarity=0.257 Sum_probs=90.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeccCCCCCCeeecEEEEEecC---CC--------CceEE
Q 004100 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMG-----NYKGTTRHFEKKTNPEWNQVFAFSKDR---IQ--------SSVLE 102 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~-----~~~~~T~~~~~~~nP~WnE~f~f~v~~---~~--------~~~l~ 102 (773)
.|.+.|+++.+++........|-||++.+- .++.+|.++++|..|.|+|.|.+.+.. .. .-.+.
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 678889999988766544456789988873 267889999999999999999999854 11 34689
Q ss_pred EEEEeCCCC--CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCc-eeeEEEEEEEEe
Q 004100 103 VTVKDKDFV--KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK-VRGELMLAVWMG 162 (773)
Q Consensus 103 i~V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~~ 162 (773)
|++|++..+ +|.++|++.+.|..|...- .....|+|.+ |++ +.|.|.+.+.+.
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~c-----ei~e~~~l~D--GRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENMC-----EICEYLPLKD--GRKAVGGKLEVKVRIR 503 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhccc-----chhhceeccc--cccccCCeeEEEEEEe
Confidence 999999888 9999999999999887542 2345677777 443 457888887665
No 252
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.07 E-value=0.00052 Score=71.32 Aligned_cols=120 Identities=23% Similarity=0.320 Sum_probs=95.4
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE---C--CeeeeeeeccCCCCCccccEEEEEEeC-C----------
Q 004100 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---G--QKWVRTRTIIDSPTPKWNEQYTWEVFD-P---------- 423 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~--~~~~~T~~~~~t~~P~wne~~~f~v~~-~---------- 423 (773)
....|++.|+++++++.. .+....|-|+++++ + .+..+|.+++.|.+|.|+|.|.+.+.. +
T Consensus 365 ~d~elel~ivrg~~~pvp---~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~f 441 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVP---GGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRF 441 (523)
T ss_pred chhHhHHHHhhcccCCCC---CCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHH
Confidence 345788889999988754 33456889999987 2 245799999999999999999999885 2
Q ss_pred -CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeEEeeEEeEeecCCCcc-cccEEEEEEEE
Q 004100 424 -CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-KMGEIHLAVRF 493 (773)
Q Consensus 424 -~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~v~l~~~~ 493 (773)
...+.|++|....+. + +|.++|++.|.|..|.+.-.+...|+|.+ |.+ ..|.+++.+++
T Consensus 442 kr~g~kfeifhkggf~---r----Sdkl~gt~nikle~Len~cei~e~~~l~D----GRK~vGGkLevKvRi 502 (523)
T KOG3837|consen 442 KRLGKKFEIFHKGGFN---R----SDKLTGTGNIKLEILENMCEICEYLPLKD----GRKAVGGKLEVKVRI 502 (523)
T ss_pred HhcCeeEEEeeccccc---c----ccceeceeeeeehhhhcccchhhceeccc----cccccCCeeEEEEEE
Confidence 236899999987653 2 68999999999999999888888999975 333 35888888887
No 253
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.00041 Score=71.51 Aligned_cols=112 Identities=25% Similarity=0.330 Sum_probs=89.0
Q ss_pred ecccCceeEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEE
Q 004100 31 YDLVEQMQYLYVRVVKAKDLPPKDV-TGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVT 104 (773)
Q Consensus 31 ~~~~~~~~~L~V~v~~a~~L~~~d~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~ 104 (773)
..+....|.|+|.|+.|++|..... ...++|||+|++-+ .+.+|+...+|..|-+-+...|.-. +....|.++
T Consensus 262 ~~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~t 340 (405)
T KOG2060|consen 262 IALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGT 340 (405)
T ss_pred hhhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEE
Confidence 3466778999999999999975533 33789999999854 3678988898988888888877755 357889999
Q ss_pred EEe-CCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCC
Q 004100 105 VKD-KDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (773)
Q Consensus 105 V~d-~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (773)
||. +.+. .+.|+|.+.+-+.+|... ......||+|....
T Consensus 341 v~gdygRmd~k~fmg~aqi~l~eL~ls----~~~~igwyKlfgss 381 (405)
T KOG2060|consen 341 VWGDYGRMDHKSFMGVAQIMLDELNLS----SSPVIGWYKLFGSS 381 (405)
T ss_pred EeccccccchHHHhhHHHHHhhhhccc----cccceeeeeccCCc
Confidence 994 5566 888999999999999875 33467899998765
No 254
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.56 E-value=0.025 Score=52.38 Aligned_cols=126 Identities=13% Similarity=0.187 Sum_probs=85.1
Q ss_pred ceEEEEEEEccCCCC-CccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC--------------Cce
Q 004100 362 GVLELGILNAQGLMP-MKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP--------------CTV 426 (773)
Q Consensus 362 g~l~v~v~~a~~L~~-~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~--------------~~~ 426 (773)
-.|.+.|..++...- .+..++...+--.+-+.+++++++|+.+..+.+|.|+|.|-|++... ++.
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 467777777775421 10001122233444557799999999999999999999999988632 457
Q ss_pred EEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccccCCeE--EeeEEeEeecCCCcccccEEEEEEEEee
Q 004100 427 ITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVY--THSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (773)
Q Consensus 427 l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~~~~g~~~~G~v~l~~~~~~ 495 (773)
|++.|.-.|..+ ...++|.-.+++..+...... .....|.+......-..|.+++++...|
T Consensus 89 ihivli~~d~~~--------~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 89 IHIVLIRTDPSG--------ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred eEEEEEEecCCC--------ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeec
Confidence 899998877643 458999999999987544322 4455555543332224699999998754
No 255
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.99 E-value=0.094 Score=49.35 Aligned_cols=107 Identities=18% Similarity=0.273 Sum_probs=73.3
Q ss_pred ecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCee----eeeeccCCCCCCeeecEEEEEe--cC-CCCceE
Q 004100 31 YDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNYK----GTTRHFEKKTNPEWNQVFAFSK--DR-IQSSVL 101 (773)
Q Consensus 31 ~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~--~~~~----~~T~~~~~~~nP~WnE~f~f~v--~~-~~~~~l 101 (773)
.+++. .++|+|+++.++...+ .+|-||++.+ |++. ..|+.+.. .++.|||.+.|++ .+ +.+..|
T Consensus 4 wd~~~---~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL 76 (158)
T cd08398 4 WKINS---NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARL 76 (158)
T ss_pred eeCCC---CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheE
Confidence 45555 4889999999998653 4577877754 5532 34554543 6899999999987 33 347899
Q ss_pred EEEEEeCCCC-----CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEecc
Q 004100 102 EVTVKDKDFV-----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQ 164 (773)
Q Consensus 102 ~i~V~d~~~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~ 164 (773)
.|.||+.... ....+|.+.++|-+.... | -+|...+.+|..+.
T Consensus 77 ~iti~~~~~~~~~k~~~~~iG~~ni~LFd~~~~-------------L-------r~G~~~L~lW~~~~ 124 (158)
T cd08398 77 CLSICSVKGRKGAKEEHCPLAWGNINLFDYTDT-------------L-------VSGKMALNLWPVPH 124 (158)
T ss_pred EEEEEEEecccCCCCceEEEEEEEEEEECCCCh-------------h-------hCCCEEEEEEcCCc
Confidence 9999997542 224689988888774311 1 14788888887543
No 256
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.95 E-value=0.13 Score=47.73 Aligned_cols=127 Identities=14% Similarity=0.121 Sum_probs=87.3
Q ss_pred CceeEEEEEEEEeecCCCCCC----CCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCC-------------
Q 004100 35 EQMQYLYVRVVKAKDLPPKDV----TGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQ------------- 97 (773)
Q Consensus 35 ~~~~~L~V~v~~a~~L~~~d~----~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~------------- 97 (773)
+...+|.++|..|+-....-. ...+--.+.+.+++|.++|+.+..+.+|.++|.|.|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 444579999999987643221 122333566777899999999999999999999999984221
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCC--ceeeEEEEEEEEecc
Q 004100 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD--KVRGELMLAVWMGTQ 164 (773)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~G~i~l~~~~~~~ 164 (773)
.+.+.+.|.--|.. ...++|+..++-+.+...+.. ....-.+|....++ -..|-|.+++.+.+.
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~---~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNG---STSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCCC---ccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 35677877766665 558999999998887765321 01223455554432 357999999877653
No 257
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.80 E-value=0.019 Score=65.52 Aligned_cols=98 Identities=21% Similarity=0.315 Sum_probs=73.4
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeecc-CCCCCCeeecE-EEEEe-cCCCCceEEEEEE
Q 004100 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-------YKGTTRHF-EKKTNPEWNQV-FAFSK-DRIQSSVLEVTVK 106 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-------~~~~T~~~-~~~~nP~WnE~-f~f~v-~~~~~~~l~i~V~ 106 (773)
.+.+.|+|++|.-|..++ ...||.|.+=| ..++|+++ .++.||+|+|. |.|.- --+.-..|+|-||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 357999999999987654 45899999855 35789988 56899999987 77763 2223467999999
Q ss_pred eCCCCCCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCC
Q 004100 107 DKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD 149 (773)
Q Consensus 107 d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 149 (773)
+.+ ..++|+-.+++..|..+ -+.+.|....+.
T Consensus 778 eEg---gK~ig~RIlpvd~l~~G--------Yrhv~LRse~Nq 809 (1189)
T KOG1265|consen 778 EEG---GKFIGQRILPVDGLNAG--------YRHVCLRSESNQ 809 (1189)
T ss_pred ccC---CceeeeeccchhcccCc--------ceeEEecCCCCC
Confidence 974 57999999999988765 244566665443
No 258
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.67 E-value=0.068 Score=51.26 Aligned_cols=91 Identities=16% Similarity=0.209 Sum_probs=61.7
Q ss_pred ecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEE--ECCe----eeeeeccCCCCCCeeecEEEEEe--cC-CCCceE
Q 004100 31 YDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVK--MGNY----KGTTRHFEKKTNPEWNQVFAFSK--DR-IQSSVL 101 (773)
Q Consensus 31 ~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~--~~~~----~~~T~~~~~~~nP~WnE~f~f~v--~~-~~~~~l 101 (773)
.++++ .++|+|+.+.++...+ ...+-||++. .|++ ..+|+....+.++.|||.+.|++ .+ +....|
T Consensus 4 w~~~~---~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArL 78 (173)
T cd08693 4 WDIEE---KFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARL 78 (173)
T ss_pred eccCC---CEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeE
Confidence 34545 5899999999998622 3456676654 4553 33566665567899999999986 33 347899
Q ss_pred EEEEEeCCCC-----------------CCeeeEEEEEEcCcc
Q 004100 102 EVTVKDKDFV-----------------KDDFMGRVLFDLNEI 126 (773)
Q Consensus 102 ~i~V~d~~~~-----------------~d~~lG~~~i~l~~l 126 (773)
.|.||+.... .+..||.+.+.|-+.
T Consensus 79 citi~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 79 CFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred EEEEEEecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 9999986532 135667766666653
No 259
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.33 E-value=0.11 Score=48.87 Aligned_cols=88 Identities=18% Similarity=0.294 Sum_probs=61.9
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCeee----eeeeccCCCCCccccEEEEEEe--C-C-CceEEEEE
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKWV----RTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGV 431 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~~~~----~T~~~~~t~~P~wne~~~f~v~--~-~-~~~l~v~v 431 (773)
..++|.|++|.++... ..+|-||.+.+ |++.. .|+.+.- .++.|||-++|++. + | ...|.|.|
T Consensus 8 ~~~~v~i~~~~~~~~~------~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti 80 (158)
T cd08398 8 SNLRIKILCATYVNVN------DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSI 80 (158)
T ss_pred CCeEEEEEeeccCCCC------CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEE
Confidence 4788999999998642 34788988855 66543 4444443 67999999999876 3 3 78999999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecCc
Q 004100 432 FDNCHLHGGDKAGGARDSRIGKVRIRLST 460 (773)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~~~i~l~~ 460 (773)
|+...-. +. ++....||.+.++|-+
T Consensus 81 ~~~~~~~-~~---k~~~~~iG~~ni~LFd 105 (158)
T cd08398 81 CSVKGRK-GA---KEEHCPLAWGNINLFD 105 (158)
T ss_pred EEEeccc-CC---CCceEEEEEEEEEEEC
Confidence 9965310 00 1134579999999876
No 260
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.03 E-value=0.16 Score=48.64 Aligned_cols=94 Identities=16% Similarity=0.279 Sum_probs=64.3
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCeee----eeeeccCCCCCccccEEEEEEe--C-C-CceEEEEE
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKWV----RTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGV 431 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~~~~----~T~~~~~t~~P~wne~~~f~v~--~-~-~~~l~v~v 431 (773)
..++|+|+.+.+|... ....+-||.+.+ |++.. .|+.+.-+.++.|||.+.|++. + | ...|.|.|
T Consensus 8 ~~f~i~i~~~~~~~~~-----~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti 82 (173)
T cd08693 8 EKFSITLHKISNLNAA-----ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAI 82 (173)
T ss_pred CCEEEEEEEeccCccC-----CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEE
Confidence 4789999999999751 234777888754 77653 5655555677999999999876 3 3 78999999
Q ss_pred EeCCCCCCCCC--------CCCCCCCccEEEEEecCc
Q 004100 432 FDNCHLHGGDK--------AGGARDSRIGKVRIRLST 460 (773)
Q Consensus 432 ~d~~~~~~~~~--------~~~~~d~~lG~~~i~l~~ 460 (773)
|+......+.+ ...+++..||.+.++|-+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 83 YEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred EEecccccccccccccccccccCcceEEEEEeEEEEc
Confidence 99754211111 012245788999888866
No 261
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.54 E-value=0.36 Score=45.60 Aligned_cols=92 Identities=23% Similarity=0.269 Sum_probs=65.4
Q ss_pred CCCCcEEEEEE--CCe----eeeeeccCCCCCCeeecEEEEEe--cC-CCCceEEEEEEeCCCC-CCeeeEEEEEEcCcc
Q 004100 57 GSCDPYVEVKM--GNY----KGTTRHFEKKTNPEWNQVFAFSK--DR-IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEI 126 (773)
Q Consensus 57 ~~~dpyv~v~~--~~~----~~~T~~~~~~~nP~WnE~f~f~v--~~-~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l 126 (773)
..+|-||.+.+ +++ ..+|+.+.-+..+.|||...|++ .+ +.+..|.|.|||.+.. +...+|.++++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34677877754 443 23566665567789999999997 33 3478899999998765 677999999998875
Q ss_pred CCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEeccCCCC
Q 004100 127 PKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEA 168 (773)
Q Consensus 127 ~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~d~~ 168 (773)
. + .| -+|...+.+|....+|..
T Consensus 108 ~-g------------~L-------r~G~~~l~lw~~~~~d~~ 129 (159)
T cd08397 108 D-G------------TL-------RRGRQKLRVWPDVEADGS 129 (159)
T ss_pred C-C------------cE-------ecCCEEEEEEeCCCCCCc
Confidence 2 1 11 147888999887766653
No 262
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.52 E-value=0.1 Score=59.73 Aligned_cols=95 Identities=23% Similarity=0.377 Sum_probs=73.1
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------EEEEeecccCCCCCccccce-EEEE-eeCCCCCeEEEEEEE
Q 004100 200 WYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-------QALRTRVSASRTINPMWNED-LMFV-AAEPFEEHLILTVED 270 (773)
Q Consensus 200 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-------~~~kT~~~~~~t~nP~wne~-f~f~-~~~~~~~~l~i~V~d 270 (773)
+.+.|+|++|.=|..++. ..||.|.+-+ +.++|+++..++.||+|+|. |.|. +--+.-..|.|.||+
T Consensus 703 ~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 468999999999987764 5899999854 56889998877999999976 7774 344455689999998
Q ss_pred ccCCCCCceeEEEEEeccccccccCCCCCCceEEEcccC
Q 004100 271 RVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKH 309 (773)
Q Consensus 271 ~~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~ 309 (773)
. ...+||+-.+|+..+.. .-+.+.|...
T Consensus 779 E----ggK~ig~RIlpvd~l~~-------GYrhv~LRse 806 (1189)
T KOG1265|consen 779 E----GGKFIGQRILPVDGLNA-------GYRHVCLRSE 806 (1189)
T ss_pred c----CCceeeeeccchhcccC-------cceeEEecCC
Confidence 6 46799999999998753 3345556554
No 263
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.41 E-value=0.81 Score=42.37 Aligned_cols=116 Identities=17% Similarity=0.222 Sum_probs=77.8
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCee---eeeeec-cCCCCCccccEEEEEEeC---C------CceEE
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW---VRTRTI-IDSPTPKWNEQYTWEVFD---P------CTVIT 428 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~---~~T~~~-~~t~~P~wne~~~f~v~~---~------~~~l~ 428 (773)
-.+.|.|++..+++. .....||+.+-|+.. ..|... ..+..-.|||.|.+.+.- . ...++
T Consensus 7 f~~~l~i~~l~~~p~-------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 7 FQFDLTIHELENLPS-------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK 79 (143)
T ss_pred EEEEEEEEEeECcCC-------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence 467888999998874 223455566666553 344433 246677999999998762 1 23688
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEecCcccc--CCeEEeeEEeEeecCCCcccccEEEEEEEEeec
Q 004100 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET--DRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (773)
Q Consensus 429 v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~~ 496 (773)
+.|+....-+ +...||++.|+|++..+ .......++|... .+....+++.+++.+.
T Consensus 80 ~~v~~~~~~~--------~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 80 FSVFEVDGSG--------KKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLSEL 137 (143)
T ss_pred EEEEEecCCC--------ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEEC
Confidence 8888864211 23699999999999977 3567778888542 2345778888877543
No 264
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=94.19 E-value=0.014 Score=56.02 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=18.7
Q ss_pred HHHHHhHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhhccCCccCCC
Q 004100 692 VGDLATQGERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHK 753 (773)
Q Consensus 692 l~~~a~~~e~~~nl~~w~~p~~t~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~~~~P~~r~~ 753 (773)
...++..+..++.++.|++|..|..++.+|.+.+.+..+++...++.+..+..+.=|.+-..
T Consensus 90 ~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~ 151 (169)
T PF02453_consen 90 AEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEK 151 (169)
T ss_dssp CCCCCHHHHHHHCCCHCT-TTGGG--------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHH
Confidence 33555668888999999999999999999999999888888777766655544444555433
No 265
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.16 E-value=0.38 Score=45.44 Aligned_cols=106 Identities=20% Similarity=0.329 Sum_probs=70.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeeccCCCCCCeeecEEEEEe--cC-CCCceEEEEEEeCC
Q 004100 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNY----KGTTRHFEKKTNPEWNQVFAFSK--DR-IQSSVLEVTVKDKD 109 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~--~~~----~~~T~~~~~~~nP~WnE~f~f~v--~~-~~~~~l~i~V~d~~ 109 (773)
.++|++....++...+ ....+-||.+.+ |++ ...|+......++.|||.+.|++ .+ +.+..|.|.||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4788888888876522 223455666643 553 23444444447899999999986 33 34688999999976
Q ss_pred CC---CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEeccC
Q 004100 110 FV---KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQA 165 (773)
Q Consensus 110 ~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~ 165 (773)
.. .+..||.+.++|-+... .| .+|...+.+|-....
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~~-------------~L-------~~G~~~l~lW~~~~~ 126 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYKG-------------KL-------RQGMITLNLWPGKKT 126 (156)
T ss_pred cCCCCcceEEEEEeEEeEcccC-------------cE-------ecCCEEEeccCCccc
Confidence 54 35799999999887532 11 147788888765433
No 266
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.94 E-value=1.4 Score=40.72 Aligned_cols=117 Identities=21% Similarity=0.316 Sum_probs=76.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee---eeeecc-CCCCCCeeecEEEEEec--------CCCCceEEEEE
Q 004100 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYK---GTTRHF-EKKTNPEWNQVFAFSKD--------RIQSSVLEVTV 105 (773)
Q Consensus 38 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~---~~T~~~-~~~~nP~WnE~f~f~v~--------~~~~~~l~i~V 105 (773)
..+.|+|.+..+++. ....-+|+..-++.. .+|... ..+-.-.|||.|.+.+. ......+.|.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 467899999999886 223445666655542 455544 33445789999999862 13456788999
Q ss_pred EeCCCC-CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEec
Q 004100 106 KDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 106 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
+..... +...+|.+.++|+++..... .....-++|... ......|.+++.+..
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~~---~~~~~~~~l~~~--~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANEDE---EPITVRLLLKKC--KKSNATLSISISLSE 136 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcCC---CcEEEEEeCccC--CCCCcEEEEEEEEEE
Confidence 887543 33699999999999986421 123345566654 233567888876654
No 267
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.26 E-value=0.6 Score=44.05 Aligned_cols=88 Identities=26% Similarity=0.357 Sum_probs=58.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEE----EEeecccCCCCCccccceEEEEee---CCCCCeEEEEEEEc
Q 004100 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQL--GNQA----LRTRVSASRTINPMWNEDLMFVAA---EPFEEHLILTVEDR 271 (773)
Q Consensus 201 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l--~~~~----~kT~~~~~~t~nP~wne~f~f~~~---~~~~~~l~i~V~d~ 271 (773)
.++|.+....++... .....+-||++.+ |++. ..|..... ..++.|||...|++. -+.+..|.|+||+.
T Consensus 9 ~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 9 NLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 377888888777641 1223566777644 5542 23333221 368999999999763 24567899999998
Q ss_pred cCCC--CCceeEEEEEecccc
Q 004100 272 VAPN--KDEVLGKCMIPLQYV 290 (773)
Q Consensus 272 ~~~~--~d~~iG~~~i~L~~l 290 (773)
+..+ .+..||.+.++|-+-
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcc
Confidence 6543 568999999988764
No 268
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.17 E-value=0.45 Score=44.94 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=52.4
Q ss_pred CCCCcEEEEEE--CCee----eeeeeccCCCCCccccEEEEEEe--C-C-CceEEEEEEeCCCCCCCCCCCCCCCCccEE
Q 004100 384 GTTDAYCVAKY--GQKW----VRTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGVFDNCHLHGGDKAGGARDSRIGK 453 (773)
Q Consensus 384 ~~~dpyv~v~~--~~~~----~~T~~~~~t~~P~wne~~~f~v~--~-~-~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~ 453 (773)
..+|-||.+.+ |++. .+|+.+.-+..+.|||-+.|++. + | .+.|.|.|||.+..+ +...||.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~--------~~~~vg~ 99 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG--------KAVPFGG 99 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCC--------CceEEEE
Confidence 34788888865 6654 36666655677899999999887 2 3 789999999976422 4678999
Q ss_pred EEEecCcc
Q 004100 454 VRIRLSTL 461 (773)
Q Consensus 454 ~~i~l~~l 461 (773)
+.++|-+-
T Consensus 100 ~~~~lFd~ 107 (159)
T cd08397 100 TTLSLFNK 107 (159)
T ss_pred EEEeeECC
Confidence 99998764
No 269
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.59 E-value=0.59 Score=44.85 Aligned_cols=90 Identities=27% Similarity=0.361 Sum_probs=62.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEEE----Eeeccc--C-CCCCccccceEEEEee---CCCCCeEEEEE
Q 004100 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQL--GNQAL----RTRVSA--S-RTINPMWNEDLMFVAA---EPFEEHLILTV 268 (773)
Q Consensus 201 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l--~~~~~----kT~~~~--~-~t~nP~wne~f~f~~~---~~~~~~l~i~V 268 (773)
.++|+|..+.+++........|-||++.+ |++.. .|+... + -...+.|||...|++. -+.+..|.|++
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 48899999999987765556788888855 55543 333211 1 1235779999999773 24577999999
Q ss_pred EEccCCC---------CCceeEEEEEecccc
Q 004100 269 EDRVAPN---------KDEVLGKCMIPLQYV 290 (773)
Q Consensus 269 ~d~~~~~---------~d~~iG~~~i~L~~l 290 (773)
|+....+ .+..||.+.++|-+-
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9976443 457899998887753
No 270
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=91.65 E-value=1.1 Score=42.92 Aligned_cols=105 Identities=23% Similarity=0.311 Sum_probs=70.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCee----eeeeccC----CCCCCeeecEEEEEec--C-CCCceEEEEE
Q 004100 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNYK----GTTRHFE----KKTNPEWNQVFAFSKD--R-IQSSVLEVTV 105 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~--~~~~----~~T~~~~----~~~nP~WnE~f~f~v~--~-~~~~~l~i~V 105 (773)
.+.|+|..+.+++........|-||.+.+ |++. ..|+... -...+.|||.+.|++. + +.+..|.|.|
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 58999999999987764445677877754 5532 2444321 1235779999999872 2 3478999999
Q ss_pred EeCCCC----------CCeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEec
Q 004100 106 KDKDFV----------KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 106 ~d~~~~----------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
|+.... .+..||.+.++|-+.. |.=.+|...+.+|...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~--------------------~~L~~G~~~L~lW~~~ 136 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR--------------------GVLRQGSLLLGLWPPS 136 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcch--------------------hhhccCCEEEEeccCC
Confidence 986543 2467788777776643 1112478888888654
No 271
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=91.61 E-value=2.2 Score=39.53 Aligned_cols=74 Identities=22% Similarity=0.331 Sum_probs=50.3
Q ss_pred eeeccCCC-CCCeeecEEEEEe--cC-CCCceEEEEEEeCCCC-CC----eeeEEEEEEcCccCCCCCCCCCCcCeEEEe
Q 004100 73 TTRHFEKK-TNPEWNQVFAFSK--DR-IQSSVLEVTVKDKDFV-KD----DFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (773)
Q Consensus 73 ~T~~~~~~-~nP~WnE~f~f~v--~~-~~~~~l~i~V~d~~~~-~d----~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (773)
.|+...-+ .++.|||.+.|++ .+ +....|.|.||+.+.. .+ ..||.+.++|-+.... |
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~-------------L 89 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQ-------------L 89 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSB-------------B
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCc-------------c
Confidence 55555545 7999999999986 33 3578999999998766 43 6999999998876321 1
Q ss_pred eeCCCCceeeEEEEEEEEeccCC
Q 004100 144 EDRKGDKVRGELMLAVWMGTQAD 166 (773)
Q Consensus 144 ~~~~~~~~~G~i~l~~~~~~~~d 166 (773)
.+|...+.+|-....+
T Consensus 90 -------~~G~~~L~lW~~~~~~ 105 (142)
T PF00792_consen 90 -------RQGPQKLSLWPDEEPD 105 (142)
T ss_dssp -------EEEEEEEE-EET-TTS
T ss_pred -------cCCCEEEEEEcCCCCc
Confidence 2588999987765433
No 272
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=91.48 E-value=2.4 Score=40.70 Aligned_cols=123 Identities=13% Similarity=0.087 Sum_probs=66.5
Q ss_pred eecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEE--ECCee---eeeeccCCCCCCeeecEEEEEe--cC-CCCceE
Q 004100 30 TYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVK--MGNYK---GTTRHFEKKTNPEWNQVFAFSK--DR-IQSSVL 101 (773)
Q Consensus 30 ~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~--~~~~~---~~T~~~~~~~nP~WnE~f~f~v--~~-~~~~~l 101 (773)
-.++.. .++|+|..+.++... ......-||++. .|++. .+|....-+.++.|||.+.|++ .+ +....|
T Consensus 5 lwdi~~---~friki~~~~~~~~~-~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arL 80 (178)
T cd08399 5 LWDCDR---KFRVKILGIDIPVLP-RNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALL 80 (178)
T ss_pred eEecCC---CEEEEEEeecccCcC-CCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEE
Confidence 345555 478888888744322 222223455543 34432 3566666677899999999987 33 347899
Q ss_pred EEEEEeCCCC--CCeeeEEEEEEcCccCCCCCCCCCCcCeEE--EeeeCCCCceeeEEEEEEEEec
Q 004100 102 EVTVKDKDFV--KDDFMGRVLFDLNEIPKRVPPDSPLAPQWY--RLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 102 ~i~V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~--~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
.|.||+.... +....|.... ...+ +....-.|. .|-+.++.=-+|...+.+|..+
T Consensus 81 c~ti~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~l~wvn~~LFD~~~~Lr~G~~~L~~W~~~ 139 (178)
T cd08399 81 NLQIYCGKAPALSSKKSAESPS-----SESK--GKHQLLYYVNLLLIDHRFLLRTGEYVLHMWQIS 139 (178)
T ss_pred EEEEEEEecCcccccccccccc-----cccc--cccceEEEEEEEEEcCCCceecCCEEEEEecCC
Confidence 9999996432 1112222100 0000 011222443 3444444333688999998755
No 273
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=90.98 E-value=2.9 Score=40.13 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=59.5
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCee---eeeeeccCCCCCccccEEEEEEe--C-C-CceEEEEEE
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKW---VRTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGVF 432 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~~~---~~T~~~~~t~~P~wne~~~f~v~--~-~-~~~l~v~v~ 432 (773)
..++|+|.++..+ .. +......-||++.+ |+.. .+|..+.-+.++.|||-+.|++. + | ...|.|.||
T Consensus 10 ~~friki~~~~~~-~~---~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~ 85 (178)
T cd08399 10 RKFRVKILGIDIP-VL---PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIY 85 (178)
T ss_pred CCEEEEEEeeccc-Cc---CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEE
Confidence 3677888888743 32 11222446666643 5554 36666666778999999999877 3 3 789999999
Q ss_pred eCCCCCC-----CC---CCCCCCCCccEEEEEecCc
Q 004100 433 DNCHLHG-----GD---KAGGARDSRIGKVRIRLST 460 (773)
Q Consensus 433 d~~~~~~-----~~---~~~~~~d~~lG~~~i~l~~ 460 (773)
+...... +. +..++.+..||.+.+.|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 86 CGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred EEecCcccccccccccccccccccceEEEEEEEEEc
Confidence 9632110 00 1112346788888888766
No 274
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=90.97 E-value=3.1 Score=34.63 Aligned_cols=64 Identities=25% Similarity=0.412 Sum_probs=48.9
Q ss_pred CCcEEEEEECC-eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCCCCeeeEEEEEEcCccC
Q 004100 59 CDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIP 127 (773)
Q Consensus 59 ~dpyv~v~~~~-~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~ 127 (773)
++-.|.+++.+ ...+|.-.. -.+..|++.|.+.++. +..|+|.||=+|. ..+-|...+.|.+..
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~--RslCav~~lrLEd~~ 73 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW--RSLCAVKFLKLEDER 73 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeec--ccEEEEEEEEecc--hhhhhheeeEhhhhc
Confidence 57889999988 567776554 3588999999999875 6789999987664 346677777777743
No 275
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=90.57 E-value=0.54 Score=47.73 Aligned_cols=79 Identities=16% Similarity=0.097 Sum_probs=61.5
Q ss_pred ecccCceeEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCe-eeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEe
Q 004100 31 YDLVEQMQYLYVRVVKAKDLPPKD--VTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKD 107 (773)
Q Consensus 31 ~~~~~~~~~L~V~v~~a~~L~~~d--~~~~~dpyv~v~~~~~-~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d 107 (773)
.++....|+|.++++++++|+-.. .+-+-+-||++....+ +.+|.+...+.-=.|.|+|..++-. ...+.+-||.
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvyS 121 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYS 121 (442)
T ss_pred eeeecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc--ceeeeEEEee
Confidence 456677899999999999997443 2446788999999874 6678777777777899999998765 3567788887
Q ss_pred CCCC
Q 004100 108 KDFV 111 (773)
Q Consensus 108 ~~~~ 111 (773)
++.-
T Consensus 122 W~pq 125 (442)
T KOG1452|consen 122 WPPQ 125 (442)
T ss_pred cCch
Confidence 7654
No 276
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=88.40 E-value=0.57 Score=54.64 Aligned_cols=107 Identities=16% Similarity=0.147 Sum_probs=84.3
Q ss_pred CCCCcEEEEEECCee-eeeeeccCC-CCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCcc
Q 004100 384 GTTDAYCVAKYGQKW-VRTRTIIDS-PTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461 (773)
Q Consensus 384 ~~~dpyv~v~~~~~~-~~T~~~~~t-~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l 461 (773)
..+++|+.+.+.... .+|..+++. .+|.|.+.|..........+++.+-+.+..| ....+|.++++...+
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G--------~s~~w~~v~~s~~~~ 207 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG--------WSKRWGRVKISFLQY 207 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc--------ceeEEEEeccchhhh
Confidence 457999999997765 688888887 7999999998888888889999998887764 467999999999999
Q ss_pred ccCCeEEeeEEeEeecCCCcccccEEEEEEEEeecch
Q 004100 462 ETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSSL 498 (773)
Q Consensus 462 ~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~~~~~~ 498 (773)
..+.....|+++...+.+...+.-.+.+.++|.+...
T Consensus 208 ~~~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~~ 244 (887)
T KOG1329|consen 208 CSGHRIGGWFPILDNDGKPHQKGSNESLRLGFTPMEK 244 (887)
T ss_pred hccccccceeeeeccCCccccCCcccceEEeeEeech
Confidence 9998899999997765533333234556666665543
No 277
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=87.61 E-value=3.2 Score=40.17 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=32.9
Q ss_pred eeeeeccCCCCCCeeecEEEEEec--CCCCceEEEEEEeCCC
Q 004100 71 KGTTRHFEKKTNPEWNQVFAFSKD--RIQSSVLEVTVKDKDF 110 (773)
Q Consensus 71 ~~~T~~~~~~~nP~WnE~f~f~v~--~~~~~~l~i~V~d~~~ 110 (773)
.++|.+...+.+|.|+|++.+.+. ......|.|++++...
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~ 95 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSS 95 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeecc
Confidence 567888888999999999999873 4457889999988654
No 278
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=87.17 E-value=0.7 Score=36.90 Aligned_cols=43 Identities=14% Similarity=0.140 Sum_probs=33.8
Q ss_pred eccccccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEccC
Q 004100 286 PLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGG 335 (773)
Q Consensus 286 ~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~~~ 335 (773)
++..++. +++|....+|..|.++.+... +..|++++++++.+.
T Consensus 2 DlgtVY~-qP~H~~~~KW~~L~dP~D~~~------G~kGYlKv~i~Vlg~ 44 (72)
T PF08151_consen 2 DLGTVYN-QPDHQFYRKWALLTDPDDTSA------GVKGYLKVDISVLGP 44 (72)
T ss_pred ceeeeec-CCCCeeEeceEEecCCCCCcc------CCceEEEEEEEEEcC
Confidence 5566664 678899999999999865433 568999999998765
No 279
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=87.11 E-value=8.4 Score=32.17 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=44.0
Q ss_pred CCcEEEEEECC-EEEEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCceeEEEEEeccc
Q 004100 221 PEVYVKAQLGN-QALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQY 289 (773)
Q Consensus 221 ~dpyv~v~l~~-~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d~~iG~~~i~L~~ 289 (773)
++..+.+++.+ ...+|.- +. ..+..|++.|.+.+.. ...|+|.|+=+|- ..+.|-..+.|++
T Consensus 9 ~eV~avLklDn~~VgqT~W-k~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd 71 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQW-KP-KSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLED 71 (98)
T ss_pred cceEEEEEEcCeEEeeccc-cc-cccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhh
Confidence 57788999987 4566665 33 6789999999999864 4578888886642 3355555666666
No 280
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=86.86 E-value=1.5 Score=44.65 Aligned_cols=76 Identities=25% Similarity=0.326 Sum_probs=58.1
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCe-eeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCC
Q 004100 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHL 437 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~ 437 (773)
-.|.|.+.++.++||..... ..+-..+-||+++++.+ ..||.+......-.|.|.|...+.. ..++.+-||.|+.-
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~-~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq 125 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQ-QKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQ 125 (442)
T ss_pred ccceEEEEEecccccccChh-ccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCch
Confidence 34899999999999976422 12335789999999764 5677777667777899999998875 46788999999753
No 281
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=86.42 E-value=3.9 Score=37.80 Aligned_cols=66 Identities=21% Similarity=0.334 Sum_probs=44.5
Q ss_pred cEEEEEE--CCeee-----eeeeccCC-CCCccccEEEEEEe--C-C-CceEEEEEEeCCCCCCCCCCCCCCC----Ccc
Q 004100 388 AYCVAKY--GQKWV-----RTRTIIDS-PTPKWNEQYTWEVF--D-P-CTVITIGVFDNCHLHGGDKAGGARD----SRI 451 (773)
Q Consensus 388 pyv~v~~--~~~~~-----~T~~~~~t-~~P~wne~~~f~v~--~-~-~~~l~v~v~d~~~~~~~~~~~~~~d----~~l 451 (773)
-||.+.+ |++.. .|..+.-+ .++.|||.+.|++. + | ...|.|.||+.+... .+ ..|
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~--------~~~~~~~~l 75 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK--------KSKKKKVPL 75 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST--------TT--EEEEE
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC--------ccccceeEE
Confidence 3555543 66542 55555555 79999999999876 3 3 789999999876532 22 689
Q ss_pred EEEEEecCcc
Q 004100 452 GKVRIRLSTL 461 (773)
Q Consensus 452 G~~~i~l~~l 461 (773)
|.+.++|-+.
T Consensus 76 gw~n~~lFd~ 85 (142)
T PF00792_consen 76 GWVNLPLFDY 85 (142)
T ss_dssp EEEEEESB-T
T ss_pred EEEEEEeECC
Confidence 9999998775
No 282
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=86.12 E-value=4.1 Score=35.12 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=47.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeeccCCCCCCeeecEEEEEec--C-CCCceEEEEEEeCC
Q 004100 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNY----KGTTRHFEKKTNPEWNQVFAFSKD--R-IQSSVLEVTVKDKD 109 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~--~~~----~~~T~~~~~~~nP~WnE~f~f~v~--~-~~~~~l~i~V~d~~ 109 (773)
+.+.+....+.........++-||.+.+ |++ ...|+.+.-...+.|||...|++. + +.+..|.|.||+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5677777777766543333477777754 553 235655555566999999999872 3 34788999999854
No 283
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=84.18 E-value=24 Score=33.71 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=57.4
Q ss_pred CCCcEEEEEECCE-EEEeecccC-CCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCceeEEEEEeccccccccCCC
Q 004100 220 FPEVYVKAQLGNQ-ALRTRVSAS-RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHK 297 (773)
Q Consensus 220 ~~dpyv~v~l~~~-~~kT~~~~~-~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d~~iG~~~i~L~~l~~~~~~~ 297 (773)
...-|+++.++++ ..+|+...- ..-.-.|||.|.+.+.. .-+.|.++||.... ..+..|+++.+++-.........
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~~~ 113 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTSTD 113 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccC-ccceEEEEEEeeCCCCccccccc
Confidence 3467899999885 455554321 12335678999998866 56689999999866 68899999999987654221111
Q ss_pred CCCceEEEcccC
Q 004100 298 PVNTRWYNLEKH 309 (773)
Q Consensus 298 ~~~~~w~~L~~~ 309 (773)
.....|+.....
T Consensus 114 ~~~~~~~eFsS~ 125 (168)
T PF15625_consen 114 NVPLEEYEFSSD 125 (168)
T ss_pred CCceEeEEEcCC
Confidence 114455555443
No 284
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=83.51 E-value=2.5 Score=40.82 Aligned_cols=40 Identities=13% Similarity=0.270 Sum_probs=32.4
Q ss_pred eeeeeccCCCCCCeeecEEEEEec--CCCCceEEEEEEeCCC
Q 004100 71 KGTTRHFEKKTNPEWNQVFAFSKD--RIQSSVLEVTVKDKDF 110 (773)
Q Consensus 71 ~~~T~~~~~~~nP~WnE~f~f~v~--~~~~~~l~i~V~d~~~ 110 (773)
.++|.+...+.+|.|+|++.+.+. ......|.|+.++...
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~ 95 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST 95 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee
Confidence 467888888999999999999884 3457789999888644
No 285
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=83.26 E-value=3.7 Score=39.89 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=32.8
Q ss_pred eeeeeccCCCCCCeeecEEEEEecC--CCCceEEEEEEeCCCC--C--CeeeEEEEEEcCc
Q 004100 71 KGTTRHFEKKTNPEWNQVFAFSKDR--IQSSVLEVTVKDKDFV--K--DDFMGRVLFDLNE 125 (773)
Q Consensus 71 ~~~T~~~~~~~nP~WnE~f~f~v~~--~~~~~l~i~V~d~~~~--~--d~~lG~~~i~l~~ 125 (773)
.+.|.+...+.+|.|+|+|.+.+.. .....|.|++++...- + +..+|.+.++|.+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3467777888999999999998843 3467899999997653 2 2678887777776
No 286
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=83.12 E-value=7.7 Score=33.84 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=50.6
Q ss_pred EEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC--------CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCc
Q 004100 389 YCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP--------CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLST 460 (773)
Q Consensus 389 yv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~--------~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~ 460 (773)
||.+.+-...-.|..+....+|.+|-+-.|.|.-. ...+.|+++..-.. ....||.+.|++.+
T Consensus 2 Fct~dFydfEtq~Tpvv~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~---------d~~tla~~~i~l~~ 72 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVRGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS---------DFETLAAGQISLRP 72 (107)
T ss_dssp EEEE-STT---EE---EESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS----------EEEEEEEEE--SH
T ss_pred EEEEEeeceeeecccceeCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC---------CeEEEEEEEeechh
Confidence 67777766554444445599999998888888732 45889999885321 46899999999999
Q ss_pred ccc--CCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004100 461 LET--DRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 461 l~~--~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
+.. +..+.....|.+. .|. ..|.++..++.
T Consensus 73 ll~~~~~~i~~~~~l~g~--~~~-~~g~l~y~~rl 104 (107)
T PF11618_consen 73 LLESNGERIHGSATLVGV--SGE-DFGTLEYWIRL 104 (107)
T ss_dssp HHH--S--EEEEEEE-BS--SS--TSEEEEEEEEE
T ss_pred hhcCCCceEEEEEEEecc--CCC-eEEEEEEEEEe
Confidence 853 3346666666543 232 56888877775
No 287
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=81.87 E-value=9.2 Score=32.91 Aligned_cols=70 Identities=24% Similarity=0.326 Sum_probs=44.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEEE----EeecccCCCCCccccceEEEEee---CCCCCeEEEEEEEcc
Q 004100 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL--GNQAL----RTRVSASRTINPMWNEDLMFVAA---EPFEEHLILTVEDRV 272 (773)
Q Consensus 202 L~V~v~~a~~L~~~~~~~~~dpyv~v~l--~~~~~----kT~~~~~~t~nP~wne~f~f~~~---~~~~~~l~i~V~d~~ 272 (773)
+.+.+..+.+.........++-||++.+ |++.. .|+.. .....+.|||...|++. -+.+..|.|++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~-~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYK-PFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEeccc-CCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4556666666654433333578888755 55432 34432 22556899999999764 245678999999864
No 288
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=81.68 E-value=3.9 Score=35.67 Aligned_cols=95 Identities=12% Similarity=0.059 Sum_probs=50.9
Q ss_pred EEEEEECC-eeeeeeccCCCCCCeeecEEEEEecC-------CCCceEEEEEEeCCCCCCeeeEEEEEEcCccCCCCCCC
Q 004100 62 YVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDR-------IQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPD 133 (773)
Q Consensus 62 yv~v~~~~-~~~~T~~~~~~~nP~WnE~f~f~v~~-------~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~ 133 (773)
||.+.+-+ +.+.|.++. +.||.+|-+-.+.|.. +.+..+.|+++..-....+.+|.+.+++.++..+.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~--- 77 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESN--- 77 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH-----
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCC---
Confidence 56666656 455666666 8899999998888742 23678999999866447889999999999998543
Q ss_pred CCCcCeEEEeeeCCCCceeeEEEEEEEE
Q 004100 134 SPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (773)
Q Consensus 134 ~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (773)
+.....-..|.+..|+ .-|.|...+.+
T Consensus 78 ~~~i~~~~~l~g~~~~-~~g~l~y~~rl 104 (107)
T PF11618_consen 78 GERIHGSATLVGVSGE-DFGTLEYWIRL 104 (107)
T ss_dssp S--EEEEEEE-BSSS--TSEEEEEEEEE
T ss_pred CceEEEEEEEeccCCC-eEEEEEEEEEe
Confidence 1123344566665554 56877766544
No 289
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=78.47 E-value=6.5 Score=38.17 Aligned_cols=58 Identities=7% Similarity=0.110 Sum_probs=34.9
Q ss_pred eeeeeeccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCc
Q 004100 398 WVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLST 460 (773)
Q Consensus 398 ~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~ 460 (773)
.+.|.+.+++.+|.|+|+|.+.+... ..-|.+.+++-..-. +. .++..+|.+.++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~-~~----~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKE-SK----EKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SS-SS-----SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecccc-cc----CccceeEEEEEEeee
Confidence 46888889999999999999988743 678999999865421 00 122799999999988
No 290
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=77.28 E-value=6.2 Score=45.02 Aligned_cols=65 Identities=31% Similarity=0.452 Sum_probs=47.5
Q ss_pred HHHHHhHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhhccCCccCC-CCCCchh
Q 004100 692 VGDLATQGERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRH-KLPSVPL 759 (773)
Q Consensus 692 l~~~a~~~e~~~nl~~w~~p~~t~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~~~~P~~r~-~~~~~~~ 759 (773)
+=-++.+.-.+.-|-+|++|+.|..|+.+-+++.++=+++|.-+++++ +.+.+|+.|. .+|+.+.
T Consensus 105 ~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~dll~p~~~~~L~---~li~~P~~r~~lFPpap~ 170 (642)
T PF11696_consen 105 VVGLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLLDLLVPAFFAFLI---ALILSPPARSILFPPAPP 170 (642)
T ss_pred HHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCcccccccCCCCCc
Confidence 334555667777888999999999999988899888888888544444 3446677886 4565553
No 291
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=77.22 E-value=12 Score=35.82 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=52.6
Q ss_pred CCcEEEEEECCee-eeeeeccC--CCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccc
Q 004100 386 TDAYCVAKYGQKW-VRTRTIID--SPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE 462 (773)
Q Consensus 386 ~dpyv~v~~~~~~-~~T~~~~~--t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~ 462 (773)
..-|+++.++++. .+|+...- ...-.|||.|.+.+..--..|.|+||..... .+..|+.+.|++-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~---------~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGL---------SDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCc---------cceEEEEEEeeCCCCc
Confidence 4568999998865 46655432 2234579999999988788999999998653 5889999999987764
Q ss_pred c
Q 004100 463 T 463 (773)
Q Consensus 463 ~ 463 (773)
.
T Consensus 108 ~ 108 (168)
T PF15625_consen 108 V 108 (168)
T ss_pred c
Confidence 3
No 292
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=73.15 E-value=0.27 Score=54.45 Aligned_cols=174 Identities=13% Similarity=0.150 Sum_probs=97.9
Q ss_pred CCCcEEEEEECCEEEEeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCceeEEEEEeccccccccCCCCC
Q 004100 220 FPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPV 299 (773)
Q Consensus 220 ~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~~~~~~d~~iG~~~i~L~~l~~~~~~~~~ 299 (773)
..++++...++.+.++|+...+ +.+|.|||. .+...+-+.. ..-...++|.+..++.+-+...--...
T Consensus 304 ~~~~~~itsf~~~~frt~~~~~-~e~piyNe~-~~E~~~Fqsn----------~~l~~kiv~~~~~~lndS~A~f~vq~~ 371 (975)
T KOG2419|consen 304 KDKWLAITSFGEQTFRTEISDD-TEKPIYNED-EREDSDFQSN----------RYLGNKIVGYCELDLNDSYANFVVQRA 371 (975)
T ss_pred CCCchheeecchhhhhhhhhcc-ccccccccc-ccccccchhh----------HHHhhhccccccccccchhhhhhhhhh
Confidence 4578999999999999999877 999999997 4444321111 111344666666666653211000000
Q ss_pred CceEEEcccCcccccccccCCceeeEEEEEEEEccCcccCCCCCccCCCCCccccccccCccceEEEEEEEccCCCCCcc
Q 004100 300 NTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKT 379 (773)
Q Consensus 300 ~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~ 379 (773)
....+.. ++ ....+.+.+..=...+|++.++
T Consensus 372 ~sn~~~~-~p------------------------------------------------E~~~~sfnl~~~a~sn~~a~r~ 402 (975)
T KOG2419|consen 372 KSNFFIS-EP------------------------------------------------ESTCKSFNLLDPASSNLPALRN 402 (975)
T ss_pred hcccccc-Cc------------------------------------------------cccceEEEeecCCcccchhhhh
Confidence 0011111 11 0011111111111223333222
Q ss_pred CC--CCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCC--CceEEEEEEeCCCCCCCCCCCCCCCCccEEEE
Q 004100 380 KD--GRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITIGVFDNCHLHGGDKAGGARDSRIGKVR 455 (773)
Q Consensus 380 ~~--~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~ 455 (773)
.+ ....+|||.++.+|...+.+.+.....+|.+++.-.+.+.+- .-.+.+.+++..... -.+.+....
T Consensus 403 ~~S~T~~em~~~~~~~vG~~~~s~sie~~v~~~~c~~~~~~s~~d~~~~fk~sf~~~~~l~~~--------F~~vvaa~~ 474 (975)
T KOG2419|consen 403 RLSKTNYEMDPFIVIVVGSRFFSCSIEDPVETEECFAKRILSIVDYEEDFKLSFSEFSDLSFA--------FGNVVAANK 474 (975)
T ss_pred ccCccccccCchhHhhhhhHHhhhhhhccccchhhhhhhcccccccccCceEeeehHHHHHHH--------HHHHHHhhh
Confidence 22 235699999999999988888888899999887766777654 446666666655432 234555555
Q ss_pred EecCccc
Q 004100 456 IRLSTLE 462 (773)
Q Consensus 456 i~l~~l~ 462 (773)
+.+-++.
T Consensus 475 ~~~~D~~ 481 (975)
T KOG2419|consen 475 LAWFDML 481 (975)
T ss_pred cchhhhc
Confidence 5555544
No 293
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=72.28 E-value=8.2 Score=41.95 Aligned_cols=48 Identities=21% Similarity=0.443 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhHH---HHHHhhccCCChhhHHHHHHHHHHHHHHHhh
Q 004100 683 SIAGRIQTVVGDLATQG---ERLQSLLSWRDPRATALFVIFCLIAAIVLYV 730 (773)
Q Consensus 683 ~~~~~vQ~~l~~~a~~~---e~~~nl~~w~~p~~t~~~~~~l~~~~~~~~~ 730 (773)
.+..++-..|+.+-.++ +++.++++|++|..|..+++++...++..++
T Consensus 10 ~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l 60 (359)
T PF06398_consen 10 SNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYL 60 (359)
T ss_pred hChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHH
Confidence 34445555566666666 8999999999998877666555555554444
No 294
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=69.10 E-value=49 Score=34.56 Aligned_cols=110 Identities=9% Similarity=0.141 Sum_probs=75.1
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCC--ccccEEEEEEeCCCceEEEEEEeCCCCC
Q 004100 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTP--KWNEQYTWEVFDPCTVITIGVFDNCHLH 438 (773)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P--~wne~~~f~v~~~~~~l~v~v~d~~~~~ 438 (773)
.-.|-|.|.+..++.. ....|+.+..|...++|..+.-+..= .-.+.....++.....|+|.||-..-.
T Consensus 57 kF~LLVeI~EI~~i~k--------~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv- 127 (508)
T PTZ00447 57 TFYLLVKINEIFNINK--------YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT- 127 (508)
T ss_pred eeeEEEEehhhhcccc--------ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc-
Confidence 3567788888777753 35579999999999988766432222 234566667777788999999997654
Q ss_pred CCCCCCCCCCCccEEEEEecCc-c-ccCCeEEeeEEeEeecCCCcccccEEEEEE
Q 004100 439 GGDKAGGARDSRIGKVRIRLST-L-ETDRVYTHSYPLLVLYPNGVKKMGEIHLAV 491 (773)
Q Consensus 439 ~~~~~~~~~d~~lG~~~i~l~~-l-~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~ 491 (773)
+...||.+.|++.. + ...-+.+.||-|.. .| ...+.|.|++
T Consensus 128 --------kk~hIgdI~InIn~dIIdk~FPKnkWy~c~k---DG-q~~cRIqLSF 170 (508)
T PTZ00447 128 --------KKVHIGQIKIDINASVISKSFPKNEWFVCFK---DG-QEICKVQMSF 170 (508)
T ss_pred --------ceeEEEEEEecccHHHHhccCCccceEEEec---CC-ceeeeEEEEe
Confidence 57899999999875 2 33445578999843 23 2335565554
No 295
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=68.21 E-value=10 Score=41.39 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=31.6
Q ss_pred ccEEEEEecCc-cccCCeEEeeEEeEeecCCCcccccEEEEEEEE
Q 004100 450 RIGKVRIRLST-LETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (773)
Q Consensus 450 ~lG~~~i~l~~-l~~~~~~~~~~~L~~~~~~g~~~~G~v~l~~~~ 493 (773)
.+|.+.|++.. +..+.....|||+.+...++. ..|.+ +++++
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~-~~~~l-lk~~~ 43 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSV-GEGLI-IKVSS 43 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCc-CcceE-EEEEe
Confidence 48999999999 677778899999987655443 34666 56655
No 296
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=66.42 E-value=15 Score=35.33 Aligned_cols=38 Identities=16% Similarity=0.051 Sum_probs=28.2
Q ss_pred eeeeccCCCCCCeeecEEEEEecCC--CCceEEEEEEeCCC
Q 004100 72 GTTRHFEKKTNPEWNQVFAFSKDRI--QSSVLEVTVKDKDF 110 (773)
Q Consensus 72 ~~T~~~~~~~nP~WnE~f~f~v~~~--~~~~l~i~V~d~~~ 110 (773)
++|.+..+ .+|.|+|+|.+.+... ....|.|++++...
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~ 94 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSS 94 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEcccc
Confidence 34444454 8999999999988422 46789999998764
No 297
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=64.92 E-value=28 Score=33.52 Aligned_cols=62 Identities=11% Similarity=0.173 Sum_probs=42.5
Q ss_pred eeeeeeeccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCc
Q 004100 397 KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLST 460 (773)
Q Consensus 397 ~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~ 460 (773)
....|.+.+++.+|.|+|++.+.+.- +..-|.++.++-+.-. + .........+|.+-+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~-k-~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQK-K-QEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccc-c-ccCCCccceEEEEEEeeec
Confidence 45788899999999999999988764 3567888888854321 0 0001134568888888764
No 298
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=64.38 E-value=14 Score=43.60 Aligned_cols=17 Identities=18% Similarity=0.428 Sum_probs=12.4
Q ss_pred HHhhhhhhHHHhhhhhh
Q 004100 727 VLYVTPFQVVALLTGFY 743 (773)
Q Consensus 727 ~~~~vP~r~i~l~~g~~ 743 (773)
-++|||.+|+++++-.|
T Consensus 90 ~~~~~p~~~~~~~~~~~ 106 (697)
T PF09726_consen 90 CLFFIPVHWLFFAASTY 106 (697)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 34459999999986544
No 299
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=62.37 E-value=25 Score=34.24 Aligned_cols=59 Identities=12% Similarity=0.155 Sum_probs=41.2
Q ss_pred eeeeeeeccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecC
Q 004100 397 KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLS 459 (773)
Q Consensus 397 ~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~ 459 (773)
..++|.+.+++.+|.|+|++.+.+.- +..-|.+.++....-...++ ....+|.+.++|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~----~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDK----SEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCC----CCCceEEEEEeee
Confidence 35789999999999999999998873 46678888877543110010 2356888888875
No 300
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=62.17 E-value=98 Score=32.47 Aligned_cols=119 Identities=13% Similarity=0.198 Sum_probs=77.1
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeecccCCCCCc--cccceEEEEeeCCCCCeEEEEEEEccCC
Q 004100 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINP--MWNEDLMFVAAEPFEEHLILTVEDRVAP 274 (773)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP--~wne~f~f~~~~~~~~~l~i~V~d~~~~ 274 (773)
.+.+.|-|.|.+..++.. ....|+.+..|.....|..+.- +..- .-.+.....+.. .+.+|.+.++-. ++
T Consensus 55 HRkF~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~TT~~IpT-sKK~RI~IqqRV~IkIRQ-cDnTLkI~lfKK-kL 126 (508)
T PTZ00447 55 YRTFYLLVKINEIFNINK-----YKHIYIIFSTDKYDFTTDEIPT-NKKNRIHIDQRVDIKIRQ-CDETLRVDLFTT-KL 126 (508)
T ss_pred cceeeEEEEehhhhcccc-----ceeEEEEEEcCceEEEcccccc-CcCceEEEeeeeeeeeee-cCceEEEEEEec-cc
Confidence 456778899888776643 3578999999999888876543 2221 222333333332 356888888875 34
Q ss_pred CCCceeEEEEEeccc-cccccCCCCCCceEEEcccCcccccccccCCceeeEEEEEEEEccCc
Q 004100 275 NKDEVLGKCMIPLQY-VDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGY 336 (773)
Q Consensus 275 ~~d~~iG~~~i~L~~-l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~i~~~~~~ 336 (773)
-+..-||...+++.. +.. ..-+..+||.+... +...+++.++......|
T Consensus 127 vkk~hIgdI~InIn~dIId---k~FPKnkWy~c~kD----------Gq~~cRIqLSFhKL~ky 176 (508)
T PTZ00447 127 TKKVHIGQIKIDINASVIS---KSFPKNEWFVCFKD----------GQEICKVQMSFYKIQKY 176 (508)
T ss_pred cceeEEEEEEecccHHHHh---ccCCccceEEEecC----------CceeeeEEEEehhhhhc
Confidence 567899999999885 332 24457789999654 23466776666544444
No 301
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=59.49 E-value=19 Score=28.81 Aligned_cols=48 Identities=25% Similarity=0.363 Sum_probs=34.9
Q ss_pred cCccCCCCCCCCCCcCeEEEeeeCCC--CceeeEEEEEEEEeccCCCCCCcc
Q 004100 123 LNEIPKRVPPDSPLAPQWYRLEDRKG--DKVRGELMLAVWMGTQADEAFPEA 172 (773)
Q Consensus 123 l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~~~~~~~~d~~~~~~ 172 (773)
+..+..+ +++....+|..|.++.. ...+|.|.+++.+..++|+.....
T Consensus 3 lgtVY~q--P~H~~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~GD~~~~~~ 52 (72)
T PF08151_consen 3 LGTVYNQ--PDHQFYRKWALLTDPDDTSAGVKGYLKVDISVLGPGDEPPVEK 52 (72)
T ss_pred eeeeecC--CCCeeEeceEEecCCCCCccCCceEEEEEEEEEcCCCcCCCCC
Confidence 3444443 34778899999999873 246899999999998888765443
No 302
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=59.20 E-value=26 Score=33.73 Aligned_cols=40 Identities=10% Similarity=0.051 Sum_probs=31.4
Q ss_pred eeeeeccCCCCCCeeecEEEEEecC--CCCceEEEEEEeCCC
Q 004100 71 KGTTRHFEKKTNPEWNQVFAFSKDR--IQSSVLEVTVKDKDF 110 (773)
Q Consensus 71 ~~~T~~~~~~~nP~WnE~f~f~v~~--~~~~~l~i~V~d~~~ 110 (773)
...|.+...+.+|.|+|++.+.+.. .....|.|+.++.+-
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec
Confidence 4567888889999999999998742 245689999998654
No 303
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=58.62 E-value=24 Score=34.18 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=30.8
Q ss_pred EEEeecccCCCCCccccceEEEEeeCC--CCCeEEEEEEEcc
Q 004100 233 ALRTRVSASRTINPMWNEDLMFVAAEP--FEEHLILTVEDRV 272 (773)
Q Consensus 233 ~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~~ 272 (773)
.++|.+.++ +.+|.|+|++.+.+... ....|.|+.++..
T Consensus 54 e~~S~V~yH-~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S 94 (189)
T cd08695 54 EYRSFVLYH-NNSPRWNETIKLPIPIDKFRGSHLRFEFRHCS 94 (189)
T ss_pred eEEEEEEEc-CCCCCCceeEEEecChhhCCCeeEEEEEEEee
Confidence 568888887 89999999999887543 3557889888753
No 304
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=56.56 E-value=50 Score=31.95 Aligned_cols=64 Identities=8% Similarity=0.091 Sum_probs=44.0
Q ss_pred eeeeeeeccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCC-CCCCCCCCccEEEEEecCc
Q 004100 397 KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVFDNCHLHGGD-KAGGARDSRIGKVRIRLST 460 (773)
Q Consensus 397 ~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d~~~~~~~~-~~~~~~d~~lG~~~i~l~~ 460 (773)
....|.+..++.+|.|+|++.+.+.- +..-|.++.++-+...... +........+|.+-+||-+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 45788899999999999999987763 3667888888865321110 0111234678888888876
No 305
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=56.20 E-value=69 Score=36.15 Aligned_cols=100 Identities=17% Similarity=0.313 Sum_probs=69.7
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 441 (773)
-.+.|.|.+.+||..... .-=.||..++.|.+.+|... ....|.|..+-.|.-..|-..++|.+|.+..- -
T Consensus 341 ~smevvvmevqglksvap-----nrivyctmevegeklqtdqa-easkp~wgtqgdfstthplpvvkvklftestg---v 411 (1218)
T KOG3543|consen 341 LSMEVVVMEVQGLKSVAP-----NRIVYCTMEVEGEKLQTDQA-EASKPKWGTQGDFSTTHPLPVVKVKLFTESTG---V 411 (1218)
T ss_pred eeeeEEEeeeccccccCC-----CeeEEEEEEecccccccchh-hhcCCCCCcCCCcccCCCCceeEEEEEeecce---e
Confidence 357788999999986422 23479999999999888764 34569999999998888989999999987530 0
Q ss_pred CCCCCCCCccEEEEEecCccccCCeEEeeEEeE
Q 004100 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (773)
Q Consensus 442 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 474 (773)
. .-.|.-||++.|.-..=.. ....|+.+.
T Consensus 412 l--aledkelgrvil~ptpns~--ks~ewh~mt 440 (1218)
T KOG3543|consen 412 L--ALEDKELGRVILQPTPNSA--KSPEWHTMT 440 (1218)
T ss_pred E--EeechhhCeEEEecCCCCc--CCccceeee
Confidence 0 0147789999885432211 123465554
No 306
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=55.53 E-value=35 Score=33.00 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=31.1
Q ss_pred eeeeeccCCCCCCeeecEEEEEec--CCCCceEEEEEEeCC
Q 004100 71 KGTTRHFEKKTNPEWNQVFAFSKD--RIQSSVLEVTVKDKD 109 (773)
Q Consensus 71 ~~~T~~~~~~~nP~WnE~f~f~v~--~~~~~~l~i~V~d~~ 109 (773)
...|.+...+.+|.|+|++.+.+. ......|.|+.++.+
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 456888888899999999999874 234678999999865
No 307
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=55.34 E-value=82 Score=34.14 Aligned_cols=110 Identities=17% Similarity=0.208 Sum_probs=62.8
Q ss_pred CCCcEEEEEECCeeeeeeeccC----CCCC-cc-ccEEEEEEe--------CC------CceEEEEEEeCCCCCC-CCCC
Q 004100 385 TTDAYCVAKYGQKWVRTRTIID----SPTP-KW-NEQYTWEVF--------DP------CTVITIGVFDNCHLHG-GDKA 443 (773)
Q Consensus 385 ~~dpyv~v~~~~~~~~T~~~~~----t~~P-~w-ne~~~f~v~--------~~------~~~l~v~v~d~~~~~~-~~~~ 443 (773)
.+-.||+|++.+-..+|..+.- +.+| .= +-.-.|.+. .+ ...|+|.||.-..=.. |-
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv-- 112 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGV-- 112 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccc--
Confidence 4678999999998888876531 1121 11 122333332 11 2579999998442100 00
Q ss_pred CCCCCCccEEEEEecCcc-ccCC---eEEeeEEeEeecCC-CcccccEEEEEEEEeecc
Q 004100 444 GGARDSRIGKVRIRLSTL-ETDR---VYTHSYPLLVLYPN-GVKKMGEIHLAVRFTCSS 497 (773)
Q Consensus 444 ~~~~d~~lG~~~i~l~~l-~~~~---~~~~~~~L~~~~~~-g~~~~G~v~l~~~~~~~~ 497 (773)
..+..+||++.|+|+-- ..++ ..+.|..+-..... +.+...++||.++..|+.
T Consensus 113 -~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpDP 170 (460)
T PF06219_consen 113 -GNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPDP 170 (460)
T ss_pred -cccceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCCC
Confidence 12567999999998732 2222 34678887332221 111246899998887654
No 308
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.22 E-value=1.1e+02 Score=30.78 Aligned_cols=38 Identities=13% Similarity=0.015 Sum_probs=28.1
Q ss_pred HHHHhHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhh
Q 004100 693 GDLATQGERLQSLLSWRDPRATALFVIFCLIAAIVLYV 730 (773)
Q Consensus 693 ~~~a~~~e~~~nl~~w~~p~~t~~~~~~l~~~~~~~~~ 730 (773)
.+++..+-.++.+..=+|+..+..+.+++++.+.+.-+
T Consensus 131 ~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~ 168 (230)
T KOG1792|consen 131 VEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSL 168 (230)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHh
Confidence 35666667777888888888888888887777776644
No 309
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=49.65 E-value=40 Score=40.10 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=66.3
Q ss_pred CCcEEEEEECC-eeeeeeccCCC-CCCeeecEEEEEecCCCCceEEEEEEeCCCCC-CeeeEEEEEEcCccCCCCCCCCC
Q 004100 59 CDPYVEVKMGN-YKGTTRHFEKK-TNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVK-DDFMGRVLFDLNEIPKRVPPDSP 135 (773)
Q Consensus 59 ~dpyv~v~~~~-~~~~T~~~~~~-~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~~-d~~lG~~~i~l~~l~~~~~~~~~ 135 (773)
.++|+.+.+.. ...+|..+.+. .+|.|.+.|....... ...+.+.|.+.+..+ ...+|.++++...+..+.
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~----- 211 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGH----- 211 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhcccccccc-ccEEEEeecCCccccceeEEEEeccchhhhhccc-----
Confidence 48899999876 34567777665 7999999998877654 467888888887775 889999999999998752
Q ss_pred CcCeEEEeeeCCCC
Q 004100 136 LAPQWYRLEDRKGD 149 (773)
Q Consensus 136 ~~~~w~~L~~~~~~ 149 (773)
...+|+++.+..+.
T Consensus 212 ~~~~~~~Il~~d~~ 225 (887)
T KOG1329|consen 212 RIGGWFPILDNDGK 225 (887)
T ss_pred cccceeeeeccCCc
Confidence 46789988876643
No 310
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=44.68 E-value=2.4e+02 Score=26.82 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=53.3
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCee---------eeeeeccC-----CCCCccccEEEEEEeC--C--
Q 004100 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKW---------VRTRTIID-----SPTPKWNEQYTWEVFD--P-- 423 (773)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~~~---------~~T~~~~~-----t~~P~wne~~~f~v~~--~-- 423 (773)
+.=.|.+|++.. ..+-||+-.+ |..| ..|.+.+. ...-.||.-|.+.... +
T Consensus 4 v~G~I~~a~~f~---------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~g 74 (168)
T PF07162_consen 4 VIGEIESAEGFE---------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQG 74 (168)
T ss_pred EEEEEEEEECCC---------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCC
Confidence 334567777663 3467888865 3333 45555442 2345799888877763 2
Q ss_pred CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCc
Q 004100 424 CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLST 460 (773)
Q Consensus 424 ~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~ 460 (773)
...|.++||..|..+ ++.+.|...+.|-.
T Consensus 75 wP~L~l~V~~~D~~g--------r~~~~GYG~~~lP~ 103 (168)
T PF07162_consen 75 WPQLVLQVYSLDSWG--------RDRVEGYGFCHLPT 103 (168)
T ss_pred CceEEEEEEEEcccC--------CeEEeEEeEEEeCC
Confidence 469999999999876 78888887666543
No 311
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.54 E-value=98 Score=28.68 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=44.3
Q ss_pred CCCCcEEEEEE--CCeeeeeee-----------ccCCCCC-ccccEEEEEEeC--C--CceEEEEEEeCCCCCCCCCCCC
Q 004100 384 GTTDAYCVAKY--GQKWVRTRT-----------IIDSPTP-KWNEQYTWEVFD--P--CTVITIGVFDNCHLHGGDKAGG 445 (773)
Q Consensus 384 ~~~dpyv~v~~--~~~~~~T~~-----------~~~t~~P-~wne~~~f~v~~--~--~~~l~v~v~d~~~~~~~~~~~~ 445 (773)
..+|.||+..+ |+.|.-++- ..+-.|| +||--++...+. | -..|.+.||-.|.+|
T Consensus 24 e~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G------- 96 (187)
T KOG4027|consen 24 EESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSG------- 96 (187)
T ss_pred CCCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCC-------
Confidence 35788888865 666643332 1122233 355444444443 2 458999999999887
Q ss_pred CCCCccEEEEEecCc
Q 004100 446 ARDSRIGKVRIRLST 460 (773)
Q Consensus 446 ~~d~~lG~~~i~l~~ 460 (773)
+|.+.|...|.+--
T Consensus 97 -~d~v~GYg~~hiP~ 110 (187)
T KOG4027|consen 97 -KDCVTGYGMLHIPT 110 (187)
T ss_pred -cceeeeeeeEecCc
Confidence 89999998887653
No 312
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=43.61 E-value=63 Score=31.08 Aligned_cols=52 Identities=21% Similarity=0.379 Sum_probs=35.0
Q ss_pred eecccCCCCCccccceEEEEeeCC--CCCeEEEEEEEccCC-----CCCceeEEEEEecc
Q 004100 236 TRVSASRTINPMWNEDLMFVAAEP--FEEHLILTVEDRVAP-----NKDEVLGKCMIPLQ 288 (773)
Q Consensus 236 T~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~~~~-----~~d~~iG~~~i~L~ 288 (773)
+.++.. ..+|.|+|+|...+... ....|.|++++...- .....+|-+.+||-
T Consensus 56 ~sv~~~-~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 56 TSVVYY-HKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred EEEEEc-CCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 444455 48999999999888544 355899999986522 23456666666655
No 313
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=42.90 E-value=2.8e+02 Score=26.33 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=53.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----------CE-EEEeecccCC----CCCccccceEEEEeeCCCC---Ce
Q 004100 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLG----------NQ-ALRTRVSASR----TINPMWNEDLMFVAAEPFE---EH 263 (773)
Q Consensus 202 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~----------~~-~~kT~~~~~~----t~nP~wne~f~f~~~~~~~---~~ 263 (773)
+.=.|..|.+... .+-||+-.+. .. ...|.+.+.. ...-.||..|++.+..... -.
T Consensus 4 v~G~I~~a~~f~~------~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFEE------DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCCC------CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 3345667775542 3668877762 23 4556655431 2346799888887754332 37
Q ss_pred EEEEEEEccCCCCCceeEEEEEecc
Q 004100 264 LILTVEDRVAPNKDEVLGKCMIPLQ 288 (773)
Q Consensus 264 l~i~V~d~~~~~~d~~iG~~~i~L~ 288 (773)
|.|+|+..|..+++.+.|-..+.|-
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEeC
Confidence 9999999999999999987666543
No 314
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=40.17 E-value=1.4e+02 Score=35.60 Aligned_cols=106 Identities=16% Similarity=0.269 Sum_probs=67.6
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE----CCee----eeeeeccCCCCCccccEEEEEEe--C-C-CceEEE
Q 004100 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY----GQKW----VRTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITI 429 (773)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~----~~~~----~~T~~~~~t~~P~wne~~~f~v~--~-~-~~~l~v 429 (773)
..++|+++.+.++-. ....|-+|.|+. |++. ..|..+....+|.||+...|.+. | | ...|-+
T Consensus 343 ~~frI~l~~is~~n~------~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~ 416 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNL------PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCL 416 (1076)
T ss_pred CceEEEEeeccccCC------CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhhee
Confidence 578899998887632 234566666654 5544 35555666889999999888776 3 3 567777
Q ss_pred EEEeCCCCCC--------CCCCCCCCCCccEEEEEecCc----cccCCeEEeeEEe
Q 004100 430 GVFDNCHLHG--------GDKAGGARDSRIGKVRIRLST----LETDRVYTHSYPL 473 (773)
Q Consensus 430 ~v~d~~~~~~--------~~~~~~~~d~~lG~~~i~l~~----l~~~~~~~~~~~L 473 (773)
.||---.... ..+.+++.+..+|.|.+.|-+ +..|+..-+-|+.
T Consensus 417 ~i~~v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~~~Lh~W~~ 472 (1076)
T KOG0904|consen 417 AIYAVKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGEYVLHMWPS 472 (1076)
T ss_pred eeeEeechhccccccchhhhhccccccCceEEEeeeeeechhhhhcCceEEEecCC
Confidence 7776421100 011133467899999988865 3556665555554
No 315
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=37.51 E-value=11 Score=35.78 Aligned_cols=29 Identities=24% Similarity=0.598 Sum_probs=0.0
Q ss_pred HHhhccCCChhhHHHHHHHHHHHHHHHhh
Q 004100 702 LQSLLSWRDPRATALFVIFCLIAAIVLYV 730 (773)
Q Consensus 702 ~~nl~~w~~p~~t~~~~~~l~~~~~~~~~ 730 (773)
+++++.|+||..|..++.++.++..++.+
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~ 29 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWL 29 (169)
T ss_dssp -----------------------------
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHH
Confidence 46899999999998877666664343333
No 316
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=36.50 E-value=1.5e+02 Score=32.24 Aligned_cols=104 Identities=16% Similarity=0.295 Sum_probs=62.0
Q ss_pred CCcEEEEEECCeeeeeeccC--C--CCCC-e---eecEEEEEecCC-----C------CceEEEEEEeCCC-------CC
Q 004100 59 CDPYVEVKMGNYKGTTRHFE--K--KTNP-E---WNQVFAFSKDRI-----Q------SSVLEVTVKDKDF-------VK 112 (773)
Q Consensus 59 ~dpyv~v~~~~~~~~T~~~~--~--~~nP-~---WnE~f~f~v~~~-----~------~~~l~i~V~d~~~-------~~ 112 (773)
+.-||+|++.+...+|..+. . +.+| . ---.|+++-.++ . ...|+|.||--.. .+
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 45599999999766666661 1 2222 1 234456553211 1 2569999998543 26
Q ss_pred CeeeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC---CceeeEEEEEEEEec
Q 004100 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG---DKVRGELMLAVWMGT 163 (773)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~---~~~~G~i~l~~~~~~ 163 (773)
.++||.++++|. +.......--....|..+-...+ .....+|++.+...+
T Consensus 116 ~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 116 GKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP 168 (460)
T ss_pred ceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC
Confidence 689999999987 33221111234567999877652 123568888876543
No 317
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=36.21 E-value=2.3e+02 Score=26.05 Aligned_cols=86 Identities=14% Similarity=0.097 Sum_probs=60.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEe------------cCCCCceEEEEEEe
Q 004100 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSK------------DRIQSSVLEVTVKD 107 (773)
Q Consensus 40 L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v------------~~~~~~~l~i~V~d 107 (773)
|.|+-+.|=|.-..+ .-|-|..|.+-|+..+|+-..-.-==.++|.|.|.- +.++.+.++|+++-
T Consensus 4 L~i~aVTCPGv~L~~---~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQ 80 (140)
T PF14909_consen 4 LEIHAVTCPGVWLCD---KGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQ 80 (140)
T ss_pred EEEEEEecCCeEeCC---CCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEE
Confidence 566666665554332 458999999999999997654322224799999973 22456889999887
Q ss_pred CCCCCCeeeEEEEEEcCccCC
Q 004100 108 KDFVKDDFMGRVLFDLNEIPK 128 (773)
Q Consensus 108 ~~~~~d~~lG~~~i~l~~l~~ 128 (773)
...-....|+..+-+++|+..
T Consensus 81 l~~~~g~iLA~ye~n~rDfLf 101 (140)
T PF14909_consen 81 LVPPAGEILAYYEENTRDFLF 101 (140)
T ss_pred EeCCCCcEEEEEeccccceEc
Confidence 544457788888888888774
No 318
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=35.06 E-value=2.1e+02 Score=21.95 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCCChhhHHHHHHHH
Q 004100 675 RMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFC 721 (773)
Q Consensus 675 ~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~nl~~w~~p~~t~~~~~~l 721 (773)
..++..|.+.+..++..|.++..++|.+.+ +...++|.+..+.+
T Consensus 4 ~~~f~eL~D~~~~L~~n~~~L~~ihesL~~---FNESFasfLYGl~m 47 (58)
T PF08653_consen 4 EPQFAELSDSMETLDKNMEQLNQIHESLSD---FNESFASFLYGLNM 47 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 456777778888888888888888888877 55666665544333
No 319
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=33.91 E-value=54 Score=37.95 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhHHHHHHhhccCCChhhHHHHHHHHHHHH---HHHhhhhhhHHHhhhhhhhccCC
Q 004100 686 GRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLIAA---IVLYVTPFQVVALLTGFYVLRHP 748 (773)
Q Consensus 686 ~~vQ~~l~~~a~~~e~~~nl~~w~~p~~t~~~~~~l~~~~---~~~~~vP~r~i~l~~g~~~~~~P 748 (773)
.-.+.+|-=+..+...++.+..|.+|..|..|+++.+... -+.|++|.-+++++.+....|+-
T Consensus 490 av~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~ 555 (683)
T PF04842_consen 490 AVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQ 555 (683)
T ss_pred HHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345555566778888899999999999977655544332 25666787666666555455553
No 320
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=33.25 E-value=2.8e+02 Score=31.63 Aligned_cols=99 Identities=22% Similarity=0.337 Sum_probs=69.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC----CCe
Q 004100 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV----KDD 114 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~----~d~ 114 (773)
-+.|.|.+..+|+...++ -=.||...+.+++.+|.... ..-|.|+-.-.|....+ -+.+.+.+|..... -|.
T Consensus 342 smevvvmevqglksvapn--rivyctmevegeklqtdqae-askp~wgtqgdfstthp-lpvvkvklftestgvlaledk 417 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAPN--RIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHP-LPVVKVKLFTESTGVLALEDK 417 (1218)
T ss_pred eeeEEEeeeccccccCCC--eeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCC-CceeEEEEEeecceeEEeech
Confidence 467888899999765432 24599999999988887654 55899999888877653 46678888876543 677
Q ss_pred eeEEEEEEcCccCCCCCCCCCCcCeEEEeeeCCC
Q 004100 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (773)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (773)
-+|++.+.- .+.....+.|+.+.-+++
T Consensus 418 elgrvil~p-------tpns~ks~ewh~mtvpkn 444 (1218)
T KOG3543|consen 418 ELGRVILQP-------TPNSAKSPEWHTMTVPKN 444 (1218)
T ss_pred hhCeEEEec-------CCCCcCCccceeeecCCC
Confidence 778766532 222344678998877764
No 321
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=32.09 E-value=14 Score=41.56 Aligned_cols=84 Identities=15% Similarity=0.076 Sum_probs=55.7
Q ss_pred ecccCceeEEEEEEEEeecCCCC--C--CCCCCCcEEEEEECCeeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEE
Q 004100 31 YDLVEQMQYLYVRVVKAKDLPPK--D--VTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVK 106 (773)
Q Consensus 31 ~~~~~~~~~L~V~v~~a~~L~~~--d--~~~~~dpyv~v~~~~~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~ 106 (773)
++.++-.|....+++.|.++..- + ..-..++++...++.+.++|+....+.+|+|||. .+.+.+.++.
T Consensus 273 ~~~dd~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn------- 344 (975)
T KOG2419|consen 273 HDADDFTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSN------- 344 (975)
T ss_pred cccchhhhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhh-------
Confidence 33445555666667777766421 1 1124689999999999999999999999999998 6655443221
Q ss_pred eCCCC-CCeeeEEEEEEcCc
Q 004100 107 DKDFV-KDDFMGRVLFDLNE 125 (773)
Q Consensus 107 d~~~~-~d~~lG~~~i~l~~ 125 (773)
.. ...++|.++.++.+
T Consensus 345 ---~~l~~kiv~~~~~~lnd 361 (975)
T KOG2419|consen 345 ---RYLGNKIVGYCELDLND 361 (975)
T ss_pred ---HHHhhhccccccccccc
Confidence 11 44566666666665
No 322
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=32.03 E-value=3.8e+02 Score=24.06 Aligned_cols=88 Identities=10% Similarity=0.184 Sum_probs=51.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEE-EeecccCCCCCccc-cceEEEEee--CCCCCeEEEEEEEccC-CCC
Q 004100 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQAL-RTRVSASRTINPMW-NEDLMFVAA--EPFEEHLILTVEDRVA-PNK 276 (773)
Q Consensus 202 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~-kT~~~~~~t~nP~w-ne~f~f~~~--~~~~~~l~i~V~d~~~-~~~ 276 (773)
|.++-+.-.+++..+..+.+.||+++.-+++.. .+..... . .... .+.+.+.+. -+-...+.|.+++... ...
T Consensus 6 l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~ 83 (134)
T PF10409_consen 6 LFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYE-D-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMS 83 (134)
T ss_dssp EEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCC-C-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTECC
T ss_pred EEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEecccee-c-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccc
Confidence 445555556777666667899999999988765 3333222 1 1111 123333332 1224578889988763 446
Q ss_pred CceeEEEEEeccccc
Q 004100 277 DEVLGKCMIPLQYVD 291 (773)
Q Consensus 277 d~~iG~~~i~L~~l~ 291 (773)
++.+.++.+.-.-+.
T Consensus 84 ~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 84 KEKMFRFWFNTGFIE 98 (134)
T ss_dssp CEEEEEEEEEGGGSB
T ss_pred cCeEEEEEEeeeeee
Confidence 677888877655443
No 323
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=31.43 E-value=21 Score=42.05 Aligned_cols=67 Identities=22% Similarity=0.273 Sum_probs=51.2
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCC
Q 004100 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDF 110 (773)
Q Consensus 37 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~-----~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~ 110 (773)
+|.+.+.+.+|..|.. ..+-||...+.. -+.+|+++.+|..|.||++++..+.+ .+..++..++++.
T Consensus 758 ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~--sqS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE--SQSSRLEKTEKST 829 (1112)
T ss_pred ccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh--ccccchhhhcccc
Confidence 4678888999988863 346688887754 36789999999999999999998865 4556676666554
No 324
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=31.36 E-value=75 Score=37.70 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=47.3
Q ss_pred ecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC----Ce----eeeeeccCCCCCCeeecEEEEEec--C-CCCc
Q 004100 31 YDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG----NY----KGTTRHFEKKTNPEWNQVFAFSKD--R-IQSS 99 (773)
Q Consensus 31 ~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~----~~----~~~T~~~~~~~nP~WnE~f~f~v~--~-~~~~ 99 (773)
.++.+ .++|+++++.++... .+.|-+|.|..+ ++ ...|..+.++.+|.||+..+|++. + +...
T Consensus 339 Wd~~~---~frI~l~~is~~n~~---~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~A 412 (1076)
T KOG0904|consen 339 WDLDR---PFRIKLVGISKVNLP---ETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMA 412 (1076)
T ss_pred HcCCC---ceEEEEeeccccCCC---cccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhh
Confidence 34544 488888888776533 234667777664 32 234555566889999999999973 3 3456
Q ss_pred eEEEEEEeC
Q 004100 100 VLEVTVKDK 108 (773)
Q Consensus 100 ~l~i~V~d~ 108 (773)
.|-|.||..
T Consensus 413 rLc~~i~~v 421 (1076)
T KOG0904|consen 413 RLCLAIYAV 421 (1076)
T ss_pred hheeeeeEe
Confidence 777777653
No 325
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=30.79 E-value=1.6e+02 Score=24.51 Aligned_cols=35 Identities=11% Similarity=0.299 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhccCCChhhH
Q 004100 680 RLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRAT 714 (773)
Q Consensus 680 ~l~~~~~~vQ~~l~~~a~~~e~~~nl~~w~~p~~t 714 (773)
.|.+-+..++..-..+...-.+++.-+-|+.-...
T Consensus 35 ~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~ 69 (89)
T PF00957_consen 35 ELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLY 69 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555666667664433
No 326
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.90 E-value=1.7e+02 Score=25.79 Aligned_cols=36 Identities=14% Similarity=0.334 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccCCChhhHHH
Q 004100 681 LRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATAL 716 (773)
Q Consensus 681 l~~~~~~vQ~~l~~~a~~~e~~~nl~~w~~p~~t~~ 716 (773)
|++-+..+|..-..+-..--+++--+-|.+-+....
T Consensus 62 L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~i 97 (116)
T KOG0860|consen 62 LDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRII 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444445555666778888665533
No 327
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.65 E-value=43 Score=38.62 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=59.1
Q ss_pred CCCcEEEEEECC-eeeeeeccCCCCCCeeecEEEEEecCCCCceEEEEEEeCCCC-CCeeeEEEEEEcCccCCCCCCCCC
Q 004100 58 SCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSP 135 (773)
Q Consensus 58 ~~dpyv~v~~~~-~~~~T~~~~~~~nP~WnE~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~ 135 (773)
..+||+.|.+.- +...+.+...+.+|.|+|+|...+.. ...+.|.|+..... .+.+...+++..+++... ..
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~----~~ 100 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLL----AL 100 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHHHH----hh
Confidence 468998888875 33355556778999999999999765 56789999887544 444444444443333321 11
Q ss_pred CcCeEEEeeeCCCCceeeEEEEEEEEec
Q 004100 136 LAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (773)
Q Consensus 136 ~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (773)
....|..++. .|.+.+.+.+..
T Consensus 101 ~~~~w~~~~~------~g~~~~~~~~~~ 122 (694)
T KOG0694|consen 101 EQRLWVLIEE------LGTLLKPAALTG 122 (694)
T ss_pred hhhhcccccc------ccceeeeecccC
Confidence 2345666433 367777665543
No 328
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.30 E-value=56 Score=28.54 Aligned_cols=36 Identities=11% Similarity=0.127 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Q 004100 671 SDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLL 706 (773)
Q Consensus 671 ~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~nl~ 706 (773)
.+++..|+.+|++....+-+-+..=+..++.+-+-|
T Consensus 38 ~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddf 73 (118)
T KOG3385|consen 38 AESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDF 73 (118)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHhccch
Confidence 367788888888866554444444444444443333
No 329
>PF14963 CAML: Calcium signal-modulating cyclophilin ligand
Probab=27.40 E-value=2.7e+02 Score=28.02 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=21.0
Q ss_pred HHHHHHHHccchhHHHHHHHHHHHHhhcccc
Q 004100 605 ILFIILVLYPELILPTVFLYLFLIGVWYYRW 635 (773)
Q Consensus 605 ~~~~~~~~~~~l~~p~~~l~l~~~~~~~~~~ 635 (773)
++=.++|-|..+++|++.+-++++.++.|+.
T Consensus 173 ~VR~fvCkyLsi~~pfl~l~l~~~gl~~~~~ 203 (263)
T PF14963_consen 173 FVRLFVCKYLSIFAPFLTLQLAYMGLSKYFP 203 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhcc
Confidence 3445557666777888888877777766653
No 330
>PRK09458 pspB phage shock protein B; Provisional
Probab=26.75 E-value=1.9e+02 Score=23.30 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004100 676 MRYDRLRSIAGRIQTVVGDL 695 (773)
Q Consensus 676 ~~~~~l~~~~~~vQ~~l~~~ 695 (773)
++++.+.+.+.+.|.-++.+
T Consensus 42 ~~L~~L~~~A~rm~~RI~tL 61 (75)
T PRK09458 42 QRLAQLTEKAERMRERIQAL 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555443
No 331
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=26.43 E-value=33 Score=40.47 Aligned_cols=92 Identities=20% Similarity=0.320 Sum_probs=60.9
Q ss_pred ccceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE---C--CeeeeeeeccCCCCCccccEEEEEEeCCCceEEEEEEeC
Q 004100 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---G--QKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDN 434 (773)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~--~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~ 434 (773)
..|.+.+.+++|.+|.. ...-||...+ | ....+|+++.+|..|.||++++.++... +...+..++.
T Consensus 757 ~ygflh~~vhsat~lkq--------s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~s-qS~r~~~~ek 827 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQ--------SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIES-QSSRLEKTEK 827 (1112)
T ss_pred cccceeeeecccccccc--------ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhhc-cccchhhhcc
Confidence 45889999999998863 3566887754 3 3567999999999999999999988753 4445666665
Q ss_pred CCCCCCCC--CCCCCCCccEEEEEecCc
Q 004100 435 CHLHGGDK--AGGARDSRIGKVRIRLST 460 (773)
Q Consensus 435 ~~~~~~~~--~~~~~d~~lG~~~i~l~~ 460 (773)
+.--..-. ....++...|+..+.+.-
T Consensus 828 ~~~~~k~~~~~~~~~~~~~~~~~~~l~~ 855 (1112)
T KOG4269|consen 828 STPVEKLIDSHSQNSQNEEKRSRMKLDP 855 (1112)
T ss_pred cchHHHhhhccchhhcccccccccccCc
Confidence 53100000 011245666666665543
No 332
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=25.99 E-value=3e+02 Score=24.07 Aligned_cols=67 Identities=24% Similarity=0.259 Sum_probs=46.0
Q ss_pred CCCceEEEEEEeCCC---C-CCeeeEEEEEEcCccCCC---------CCCCCCCcCeEEEeeeCCCCceeeEEEEEEEEe
Q 004100 96 IQSSVLEVTVKDKDF---V-KDDFMGRVLFDLNEIPKR---------VPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (773)
Q Consensus 96 ~~~~~l~i~V~d~~~---~-~d~~lG~~~i~l~~l~~~---------~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (773)
+....|++.+++... . ...++|++.+++.+...+ ..+.......-|+|.+..|. ..|+|.+.+.+.
T Consensus 26 l~~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~-~~G~I~l~iRLs 104 (112)
T PF14924_consen 26 LSSFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGN-PVGEISLYIRLS 104 (112)
T ss_pred hhCCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCc-eeeeEEEEEEEe
Confidence 346778887776543 2 667999999999876621 01223345667999987766 679999887665
Q ss_pred c
Q 004100 163 T 163 (773)
Q Consensus 163 ~ 163 (773)
.
T Consensus 105 c 105 (112)
T PF14924_consen 105 C 105 (112)
T ss_pred c
Confidence 3
No 333
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=24.93 E-value=5e+02 Score=23.22 Aligned_cols=89 Identities=17% Similarity=0.218 Sum_probs=49.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeee-eeeccCCCCCCeeecEEEEEec--CCCCceEEEEEEeCCC--CCC
Q 004100 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKG-TTRHFEKKTNPEWNQVFAFSKD--RIQSSVLEVTVKDKDF--VKD 113 (773)
Q Consensus 39 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~-~T~~~~~~~nP~WnE~f~f~v~--~~~~~~l~i~V~d~~~--~~d 113 (773)
.|.++=+.-.++|..+..+.++||++|.-++... .|........-.=.+.+.+.+. -+-..-+.|++|+.+. ..+
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~ 84 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSK 84 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCccccc
Confidence 4555556667777766677899999999888654 3333222111111122333322 1113457788888763 266
Q ss_pred eeeEEEEEEcCccC
Q 004100 114 DFMGRVLFDLNEIP 127 (773)
Q Consensus 114 ~~lG~~~i~l~~l~ 127 (773)
+.+.++.+.-.=+.
T Consensus 85 ~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 85 EKMFRFWFNTGFIE 98 (134)
T ss_dssp EEEEEEEEEGGGSB
T ss_pred CeEEEEEEeeeeee
Confidence 66777777655444
No 334
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=24.92 E-value=1.8e+02 Score=25.46 Aligned_cols=64 Identities=25% Similarity=0.299 Sum_probs=41.2
Q ss_pred CceEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecCccc--------------cCCeEEeeEEeEeecCCCcccccEEEE
Q 004100 424 CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE--------------TDRVYTHSYPLLVLYPNGVKKMGEIHL 489 (773)
Q Consensus 424 ~~~l~v~v~d~~~~~~~~~~~~~~d~~lG~~~i~l~~l~--------------~~~~~~~~~~L~~~~~~g~~~~G~v~l 489 (773)
...|++.+++-..- .. .....+||.+.|++.+.. ........|+|.+. .| ...|+|.+
T Consensus 28 ~~pl~i~~~~~~~~--~~---~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~--~~-~~~G~I~l 99 (112)
T PF14924_consen 28 SFPLYIVVKKVPPG--FP---TPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDE--NG-NPVGEISL 99 (112)
T ss_pred CCceEEEEEecCCC--CC---CCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecC--CC-ceeeeEEE
Confidence 45677777664220 00 014678999999998863 11245678999864 33 35699999
Q ss_pred EEEEee
Q 004100 490 AVRFTC 495 (773)
Q Consensus 490 ~~~~~~ 495 (773)
.++.++
T Consensus 100 ~iRLsc 105 (112)
T PF14924_consen 100 YIRLSC 105 (112)
T ss_pred EEEEec
Confidence 998854
No 335
>COG4920 Predicted membrane protein [Function unknown]
Probab=24.76 E-value=3.7e+02 Score=26.26 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=5.9
Q ss_pred hccCCccCCCCC
Q 004100 744 VLRHPRFRHKLP 755 (773)
Q Consensus 744 ~~~~P~~r~~~~ 755 (773)
.++.|....++|
T Consensus 158 v~kfp~~~p~~p 169 (249)
T COG4920 158 VFKFPPVAPRIP 169 (249)
T ss_pred HhcCCCCcccCc
Confidence 445555554443
No 336
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.17 E-value=7e+02 Score=24.21 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHccchhHHHHH
Q 004100 601 VLIHILFIILVLYPELILPTVF 622 (773)
Q Consensus 601 ~~~~~~~~~~~~~~~l~~p~~~ 622 (773)
++.+++++.++|+|-.++-++.
T Consensus 76 iv~~~~~~sLi~~P~~Livl~~ 97 (187)
T KOG3142|consen 76 IVAILLFLSLITHPLSLIVLLA 97 (187)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 3334455556888755443333
No 337
>PRK09697 protein secretion protein GspB; Provisional
Probab=22.85 E-value=2.3e+02 Score=24.49 Aligned_cols=7 Identities=29% Similarity=0.216 Sum_probs=3.7
Q ss_pred hhhHHHH
Q 004100 671 SDIVRMR 677 (773)
Q Consensus 671 ~~~~~~~ 677 (773)
++.+++|
T Consensus 123 ~A~Lr~R 129 (139)
T PRK09697 123 KAGLRER 129 (139)
T ss_pred chHHHHH
Confidence 4555554
No 338
>PHA02844 putative transmembrane protein; Provisional
Probab=22.75 E-value=2.3e+02 Score=22.69 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=13.2
Q ss_pred HHHHhHHHHHHhhccCC
Q 004100 693 GDLATQGERLQSLLSWR 709 (773)
Q Consensus 693 ~~~a~~~e~~~nl~~w~ 709 (773)
+|+.+++|-+++.++=.
T Consensus 18 dDFnnFI~vVksVLtd~ 34 (75)
T PHA02844 18 EDFNNFIDVVKSVLSDD 34 (75)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 57788888888888654
No 339
>PHA02975 hypothetical protein; Provisional
Probab=22.18 E-value=2.4e+02 Score=22.17 Aligned_cols=17 Identities=12% Similarity=0.200 Sum_probs=13.0
Q ss_pred HHHHhHHHHHHhhccCC
Q 004100 693 GDLATQGERLQSLLSWR 709 (773)
Q Consensus 693 ~~~a~~~e~~~nl~~w~ 709 (773)
+|..+++|-+++.++=+
T Consensus 18 dDF~nFI~vVksVLtdk 34 (69)
T PHA02975 18 SDFEDFIDTIMHVLTGK 34 (69)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 57788888888888653
No 340
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=21.97 E-value=3.2e+02 Score=28.16 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhhccCCccCC
Q 004100 677 RYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRH 752 (773)
Q Consensus 677 ~~~~l~~~~~~vQ~~l~~~a~~~e~~~nl~~w~~p~~t~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~~~~P~~r~ 752 (773)
.++.+......++...+.+....+...+..+-+ ....+-.+.+.+ +.|+|+-++.-++|.++..-|....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~n~~m~~LT~~t--~iflPlt~i~g~fGMN~~~~p~~~~ 266 (292)
T PF01544_consen 197 LLDRIERLLERAESLRERLESLQDLYQSKLSNR----QNRVMKVLTIVT--AIFLPLTFITGIFGMNFKGMPELDW 266 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH----HHHHHHHHHHHH--HHHHHHHHHTTSTTS-SS---SSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH--HHHHHHHHHHHHhhCCccCCCccCC
Confidence 333333344444444444444444444444443 233333333333 3448998777777777655554333
No 341
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=21.21 E-value=7.6e+02 Score=30.17 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=19.2
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHhh
Q 004100 706 LSWRDPRATALFVIFCLIAAIVLYV 730 (773)
Q Consensus 706 ~~w~~p~~t~~~~~~l~~~~~~~~~ 730 (773)
+..+||++-..++++++++++++..
T Consensus 133 ~a~~DP~aLR~~~~l~lv~a~~~a~ 157 (851)
T TIGR02302 133 LPIHDPWGLRALVVLLLVAAFAYSG 157 (851)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHhC
Confidence 5679999998888888877775544
No 342
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=21.00 E-value=8.7e+02 Score=24.51 Aligned_cols=37 Identities=19% Similarity=0.561 Sum_probs=21.0
Q ss_pred cCCchhHHHHHHHHH-HHHHccchhHHHHHHHHHHHHh
Q 004100 594 WKNPITTVLIHILFI-ILVLYPELILPTVFLYLFLIGV 630 (773)
Q Consensus 594 W~~p~~t~~~~~~~~-~~~~~~~l~~p~~~l~l~~~~~ 630 (773)
|+.-.-|.+..++|. ++..+|+.++++++++.++++.
T Consensus 1 ~~~~lisq~~il~fa~Vla~~p~y~~~~filYfiv~~~ 38 (233)
T PF09973_consen 1 WRRILISQVSILLFAAVLAFFPQYYFEVFILYFIVFFG 38 (233)
T ss_pred CcChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 344334444443333 3466788877777777655555
No 343
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=20.93 E-value=4.6e+02 Score=25.06 Aligned_cols=83 Identities=16% Similarity=0.046 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhHHHHHHhhccCCChh------------------hHHHHHHHHHHH-----HHHHhhhhhhHHHhhhhh
Q 004100 686 GRIQTVVGDLATQGERLQSLLSWRDPR------------------ATALFVIFCLIA-----AIVLYVTPFQVVALLTGF 742 (773)
Q Consensus 686 ~~vQ~~l~~~a~~~e~~~nl~~w~~p~------------------~t~~~~~~l~~~-----~~~~~~vP~r~i~l~~g~ 742 (773)
.-+.+.+-.+-.+++.+.|++-+.-|. ++.+.+..|+-+ ..+++++|+.|..-.+.+
T Consensus 46 ~~l~~lfs~vlG~g~ilt~~~~~~lP~~~~l~a~~~~n~~dd~q~l~ywmV~~~lsaie~~s~~il~~vP~Y~~~K~vFl 125 (186)
T COG5052 46 LYLLNLFSTVLGFGLILTNVAGFSLPAQLSLVAFYTLNFMDDTQLLTYWMVFGFLSAIEKYSGAILSKVPFYWTLKNVFL 125 (186)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHccHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334555666666666666655444443 444545555433 236778998877766655
Q ss_pred hhccCCccCCCCCCchhhhhhcCCCCc
Q 004100 743 YVLRHPRFRHKLPSVPLNFFRRLPART 769 (773)
Q Consensus 743 ~~~~~P~~r~~~~~~~~~~~~r~ps~~ 769 (773)
-.+..|+++-.. =...+..++.|||.
T Consensus 126 lw~~~prt~GA~-~IY~~~i~p~~s~~ 151 (186)
T COG5052 126 LWLLLPRTEGAR-IIYDDIIAPDVSDH 151 (186)
T ss_pred HHHhccccCcee-eeHHhhccccccHH
Confidence 567778887521 15567777777764
No 344
>PHA02650 hypothetical protein; Provisional
Probab=20.74 E-value=3.1e+02 Score=22.29 Aligned_cols=16 Identities=25% Similarity=0.188 Sum_probs=12.2
Q ss_pred HHHHhHHHHHHhhccC
Q 004100 693 GDLATQGERLQSLLSW 708 (773)
Q Consensus 693 ~~~a~~~e~~~nl~~w 708 (773)
+|+.+++|-+++.++=
T Consensus 18 dDFnnFI~VVkSVLtD 33 (81)
T PHA02650 18 DDFNNFIDVVKSVLSD 33 (81)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 5777888888888754
No 345
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.22 E-value=89 Score=36.19 Aligned_cols=51 Identities=18% Similarity=0.144 Sum_probs=39.7
Q ss_pred CCCcEEEEEECCeee-eeeeccCCCCCccccEEEEEEeCCCceEEEEEEeCCC
Q 004100 385 TTDAYCVAKYGQKWV-RTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCH 436 (773)
Q Consensus 385 ~~dpyv~v~~~~~~~-~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~ 436 (773)
..|||+-|.+.-+.. .+.+.+.+..|.|+++|..++.. ...+.|.|+....
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~ 78 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSP 78 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCC
Confidence 478999998876553 66667789999999999999654 5677888888643
No 346
>PHA02819 hypothetical protein; Provisional
Probab=20.17 E-value=3.3e+02 Score=21.60 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=11.0
Q ss_pred HHHHhHHHHHHhhccC
Q 004100 693 GDLATQGERLQSLLSW 708 (773)
Q Consensus 693 ~~~a~~~e~~~nl~~w 708 (773)
+|+.+++|-+++.++=
T Consensus 18 dDFnnFI~VVksVLtd 33 (71)
T PHA02819 18 DDFNNFINVVKSVLNN 33 (71)
T ss_pred hHHHHHHHHHHHHHcC
Confidence 5667777777777644
No 347
>PHA01159 hypothetical protein
Probab=20.08 E-value=4e+02 Score=23.46 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhhccCCccCCCCCC
Q 004100 677 RYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPS 756 (773)
Q Consensus 677 ~~~~l~~~~~~vQ~~l~~~a~~~e~~~nl~~w~~p~~t~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~~~~P~~r~~~~~ 756 (773)
-|..++.++..-|..++.+++..+-+++.|-|-.-+.-..-+... +..+=+.+---|.++--.|++ +
T Consensus 4 i~~~L~~I~~~~qt~~dFf~~~~d~i~~~fv~~~~~~i~~~l~~~-I~~i~~sY~~A~~Ll~~iG~~------------s 70 (114)
T PHA01159 4 LYSALEFIANIGQTFLDFFDVAIDWIKNAFVYGAMWLISVWLDIL-IASIQIAYKIAQLLLEEYGVY------------T 70 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCHH------------H
Confidence 356677788888888888888888888877665544332222222 222222222334344344443 3
Q ss_pred chhhhhhcCCCC
Q 004100 757 VPLNFFRRLPAR 768 (773)
Q Consensus 757 ~~~~~~~r~ps~ 768 (773)
.+...+++|||+
T Consensus 71 ~i~s~fnaLPse 82 (114)
T PHA01159 71 MVESRFNALPSD 82 (114)
T ss_pred HHHHHHHhCCHH
Confidence 455677777765
Done!