BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004101
(773 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 344 bits (883), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 237/664 (35%), Positives = 353/664 (53%), Gaps = 45/664 (6%)
Query: 126 TTYSYKFLGLSPTNGGAWYESQFGHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQ 185
TT++ FL L+P++G W S G I+ VLD+GIWPES SF D GMP +PK+W+G+C+
Sbjct: 1 TTHTSDFLKLNPSSG-LWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICK 59
Query: 186 EGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEYVSPRDXXXXXXXXXXXXXXXX 245
G FN+S CNRKLIGA +F KG T+ NI S RD
Sbjct: 60 PGTQFNASMCNRKLIGANYFNKGILANDPTV--NITMN--SARDTDGHGTHCASITAGNF 115
Query: 246 XXXXXXLGNAGGVARGMAPGAHIAVYKVCWFNGCYSSDILAAMDVAIRDGVDVXXXXXXX 305
G A G ARG+AP A +AVYK + G ++SD++AAMD A+ DGVD+
Sbjct: 116 AKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGY 175
Query: 306 XXXXXXDDSIAIGSFRAMEHGISVVCAAGNNGPLQSSVANIAPWIATVGASTLDRRFPAI 365
+D+I+I SF AM G+ V +AGN GP S+ N +PWI V + DR F
Sbjct: 176 RFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGT 235
Query: 366 VRMADGGLLYGESMYPGNQFSKTEKELDLIY-VTGGDGGSEFCLKGSLPIAEVRGKMVVC 424
+ + +G + G S++P F ++ +IY T D SE L + +V+C
Sbjct: 236 LTLGNGLKIRGWSLFPARAFV---RDSPVIYNKTLSDCSSEELLSQ---VENPENTIVIC 289
Query: 425 DRGVNGR-AEKGQVVKEAGGAAMILANTEINLEEDSVDVHVLPATLVGFAESVRLKVYIN 483
D NG +++ +++ A A I + + + + + P +V E ++ Y+
Sbjct: 290 DD--NGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPN--PGVVVNKKEGKQVINYVK 345
Query: 484 STRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLG 543
++ A I F T + AP VA SARGPS I KPD++APGV I+AA+P N+
Sbjct: 346 NSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVF 405
Query: 544 PSSLPED-NRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTADGNDHF 602
+S+ + ++ + SGTSMA PH +GI A++++A+P+WSP+AI+SA+MTTAD D+
Sbjct: 406 ATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNT 465
Query: 603 GKPIMDGNKPPAV-------------KAINPGLIYDITPDEYVTHLCTLGYTESEIFTIT 649
KPI D + A +A++PGL+YD TP +YV LC+L +TE + TI
Sbjct: 466 RKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIA 525
Query: 650 HRNVSCHENLRMNRGFSLNYPSISVVFKHGKKSTMI----RRRLTNVGSPNSIYSVKVTA 705
+ S + + N LNYPS ++ T++ +R +TNVG + Y K+ A
Sbjct: 526 RSSASHNCS---NPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKA 582
Query: 706 PEDVEVRIKPQRLIFKYVNQSLIYRIWIISRKRMTKDRMSFAQGQLAWV-HSGNSSLYRV 764
P++ + + PQ L+FK N+ Y + I + + + S G + WV +GN S V
Sbjct: 583 PKNSTISVSPQILVFKNKNEKQSYTLTI---RYIGDEGQSRNVGSITWVEQNGNHS---V 636
Query: 765 RSPI 768
RSPI
Sbjct: 637 RSPI 640
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 328 bits (842), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 232/661 (35%), Positives = 320/661 (48%), Gaps = 58/661 (8%)
Query: 126 TTYSYKFLGLSPTNGGAWYESQFGHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQ 185
TT S+ FLG T SQ ++GVLDTGIWPESPSFDD G P P KW+G C+
Sbjct: 1 TTRSWDFLGFPLT---VPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCE 57
Query: 186 EGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEYVSPRDXXXXXXXXXXXXXXXX 245
+F CNRK+IGAR + G + SP + PRD
Sbjct: 58 TSNNF---RCNRKIIGARSYHIGRPI-----SPGDVN---GPRDTNGHGTHTASTAAGGL 106
Query: 246 XXXXXXLGNAGGVARGMAPGAHIAVYKVCWFNGCYSSDILAAMDVAIRDGVDVXXXXXXX 305
G G ARG P A IA YKVCW +GC +DILAA D AI DGVD+
Sbjct: 107 VSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGG 166
Query: 306 XX-XXXXDDSIAIGSFRAMEHGISVVCAAGNNGPLQSSVANIAPWIATVGASTLDRRFPA 364
D+IAIGSF A+E GI +AGN GP + A+++PW+ +V AST+DR+F
Sbjct: 167 ANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVT 226
Query: 365 IVRMADGGLLYGESMYP-GNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVV 423
V++ +G G S+ NQ+ D+ S FC S+ ++GK+VV
Sbjct: 227 QVQIGNGQSFQGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVV 286
Query: 424 CDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDSVDVHVLPATLVGFAESVRLKVYIN 483
C+ + K GAA +L + D D + LP++++ + + YI
Sbjct: 287 CEASFGPH----EFFKSLDGAAGVLMTSN---TRDYADSYPLPSSVLDPNDLLATLRYIY 339
Query: 484 STRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLG 543
S R A IF T I + AP V FS+RGP+ T ++KPD+ PGV I+AAW
Sbjct: 340 SIRSPGA-TIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAW----- 393
Query: 544 PSSLPEDNRRVN--FTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTADGNDH 601
PS P R N F ++SGTSM+CPH++GI +++ P WSPAAIKSA+MTTA +
Sbjct: 394 PSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNA 453
Query: 602 FGKPIMD-----GNKPPAVKAINPGLIYDITPDEYVTHLCTLGYTESEIFTITHRNVSCH 656
P + G+ P +KA+ PGL+YD +YV LC GY + IT +C
Sbjct: 454 RFNPQAEFAYGSGHVNP-LKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACT 512
Query: 657 ENLRMNRGFSLNYPSISVVFKHGKK-STMIRRRLTNVGSPNSIYSVKVTAPEDVEVRIKP 715
R + LNYPS + + + R LT+V S Y ++AP+ + + + P
Sbjct: 513 SG-NTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNP 571
Query: 716 QRLIFKYVNQSLIYRIWIISRKRMTKDRMSFAQG-----QLAWVHSGNSSLYRVRSPISV 770
L F + RK T +G L W + ++ VRSPI++
Sbjct: 572 NVLSFNGLGD----------RKSFTLTVRGSIKGFVVSASLVW----SDGVHYVRSPITI 617
Query: 771 T 771
T
Sbjct: 618 T 618
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 9/117 (7%)
Query: 481 YINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQ 540
Y + A +++I G V + + FS+RGP+ LKP+V+APG IIAA
Sbjct: 286 YTVGSPAAASKVITVGAV---DKYDVITDFSSRGPT--ADNRLKPEVVAPGNWIIAARAS 340
Query: 541 NLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTAD 597
D +T GT+MA PHV+GI AL+ A+P W+P +K+A++ TAD
Sbjct: 341 GTSMGQPINDY----YTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETAD 393
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 257 GVARGMAPGAHIAVYKVCWFNGCYS-SDILAAMDVAIRD----GVDVXXXXXXXXXXXXX 311
G +GMAPGA + KV G S SDI+ +D A+++ G+ V
Sbjct: 197 GKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDG 256
Query: 312 DDSIAIGSFRAMEHGISVVCAAGNNGPLQSSVAN--IAPWIATVGA 355
DS++ A + G+ VV AAGN+GP + +V + A + TVGA
Sbjct: 257 TDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGA 302
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I + P N + SGTSMA P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICSTLPGN-------------KYGAKSGTSMASP 216
Query: 568 HVSGITALIRSAYPKWSPAAIKSAI--MTTADGND-HFGKPIMD 608
HV+G ALI S +P W+ ++S++ TT GN ++GK +++
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGNSFYYGKGLIN 260
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I++ P N + SGT+MA P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSIVSTLPGN-------------KYGAKSGTAMASP 216
Query: 568 HVSGITALIRSAYPKWSPAAIKSAI--MTTADGND-HFGKPIMD 608
HV+G ALI S +P W+ ++S++ TT G+ ++GK +++
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 260
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I++ P N + SGT+MA P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSIVSTLPGN-------------KYGAKSGTAMASP 216
Query: 568 HVSGITALIRSAYPKWSPAAIKSAI--MTTADGND-HFGKPIMD 608
HV+G ALI S +P W+ ++S++ TT G+ ++GK +++
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 260
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I + P N + SGTSMA P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICSTLPGN-------------KYGAKSGTSMASP 216
Query: 568 HVSGITALIRSAYPKWSPAAIKSAI--MTTADGND-HFGKPIMD 608
HV+G ALI S +P W+ ++S++ TT G+ ++GK +++
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 260
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I + P N + SGTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIXSTLPGN-------------KYGAYSGTSMASP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAI--MTTADGND-HFGKPIMD 608
HV+G ALI S +P W+ ++S++ TT G+ ++GK +++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I + P N + SGTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSICSTLPGN-------------KYGAKSGTSMASP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAI--MTTADGND-HFGKPIMD 608
HV+G ALI S +P W+ ++S++ TT G+ ++GK +++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I + P N + SGTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSICSTLPGN-------------KYGAKSGTSMASP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAI--MTTADGND-HFGKPIMD 608
HV+G ALI S +P W+ ++S++ TT G+ ++GK +++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 21/88 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I + P N + SGTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIXSTLPGN-------------KYGAYSGTSMASP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTT 595
HV+G ALI S +P W+ ++S++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 16/115 (13%)
Query: 507 VAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMAC 566
VAQFS+RGP+ +KPDV+APG I++A +L P S N + M GTSMA
Sbjct: 202 VAQFSSRGPT--KDGRIKPDVMAPGTFILSA-RSSLAPDSSFWANHDSKYAYMGGTSMAT 258
Query: 567 PHVSGITALIRSAYPKW-----SPAAIKSAIMTTA--------DGNDHFGKPIMD 608
P V+G A +R + K P+ +K+A++ A +GN +G+ +D
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGYPNGNQGWGRVTLD 313
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I + P N + SGTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAKSGTSMASP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAI--MTTADGND-HFGKPIMD 608
HV+G ALI S +P W+ ++S++ TT G+ ++GK +++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 25/105 (23%)
Query: 492 IIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDN 551
I G RAP FS+ GP L DV+APGV+I + P
Sbjct: 166 IAVGAVDSSNQRAP----FSSVGPEL--------DVMAPGVSICSTLPGG---------- 203
Query: 552 RRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTA 596
+ +SGTSMA PHV+G ALI S +P W+ ++S++ TA
Sbjct: 204 ---KYGALSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTA 245
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 21/88 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I + P N + +GTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTT 595
HV+G ALI S +P W+ ++S++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNT 253
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 21/88 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I + P N + +GTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTT 595
HV+G ALI S +P W+ ++S++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNT 253
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I + P N + SGT MA P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICSTLPGN-------------KYGAKSGTXMASP 216
Query: 568 HVSGITALIRSAYPKWSPAAIKSAI--MTTADGND-HFGKPIMD 608
HV+G ALI S +P W+ ++S++ TT G+ ++GK +++
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 260
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 21/91 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS G L D++APGVN+ + +P + + ++GTSMA P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYPGST-------------YASLNGTSMATP 219
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTADG 598
HV+G+ AL++ P WS I++ + TA G
Sbjct: 220 HVAGVAALVKQKNPSWSNVQIRNHLKNTATG 250
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I + P N + +GTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAI--MTTADGND-HFGKPIMD 608
HV+G ALI S +P W+ ++S++ TT G+ ++GK +++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I + P N + +GTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAI--MTTADGND-HFGKPIMD 608
HV+G ALI S +P W+ ++S++ TT G+ ++GK +++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I + P N + +GTSMA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAI--MTTADGND-HFGKPIMD 608
HV+G ALI S +P W+ ++S++ TT G+ ++GK +++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 89/192 (46%), Gaps = 32/192 (16%)
Query: 416 EVRGKMVVCDRGVNGRAEKGQVVKEAGGAA-MILANTEINLEEDSVDVHVLPATLVGFAE 474
+V+GK+ + +RG +K K+AG +I N + + +V +PA + +
Sbjct: 287 DVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKD 346
Query: 475 SVRLKVYINSTRRARARIIFGGT--VIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGV 532
+ LK ++ I F T V+ + +++FS+ G L +KPD+ APG
Sbjct: 347 GLLLK------DNSKKTITFNATPKVLPTASDTKLSRFSSWG--LTADGNIKPDIAAPGQ 398
Query: 533 NIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIR----SAYPKWSPAA- 587
+I+++ N + +SGTSM+ P V+GI L++ + YP +P+
Sbjct: 399 DILSSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSER 445
Query: 588 ---IKSAIMTTA 596
K +M++A
Sbjct: 446 LDLAKKVLMSSA 457
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ G L +V+APGV++ + +P N +T ++GTSMA P
Sbjct: 186 ASFSSVGSEL--------EVMAPGVSVYSTYPSN-------------TYTSLNGTSMASP 224
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTAD--GND-HFGKPIMD 608
HV+G ALI S YP S + +++ + +TA G+ ++GK +++
Sbjct: 225 HVAGAAALILSKYPTLSASQVRNRLSSTATNLGDSFYYGKGLIN 268
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I + P N + SGT MA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYSGTXMASP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAI--MTTADGND-HFGKPIMD 608
HV+G ALI S +P W+ ++S++ TT G+ ++GK +++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 25/105 (23%)
Query: 492 IIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDN 551
I G RAP FS+ GP L DV+APGV+I + P
Sbjct: 166 IAVGAVDSSNQRAP----FSSVGPEL--------DVMAPGVSICSTLPGG---------- 203
Query: 552 RRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTA 596
+ +SGT+MA PHV+G ALI S +P W+ ++S++ TA
Sbjct: 204 ---KYGALSGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTA 245
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I + P N + SGT MA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAKSGTXMASP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAI--MTTADGND-HFGKPIMD 608
HV+G ALI S +P W+ ++S++ TT G+ ++GK +++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I + P N + SGT MA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYSGTXMASP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAI--MTTADGND-HFGKPIMD 608
HV+G ALI S +P W+ ++S++ TT G+ ++GK +++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I + P N + SGT MA P
Sbjct: 175 ASFSSVGPEL--------DVMAPGVSIWSTLPGN-------------KYGAKSGTXMASP 213
Query: 568 HVSGITALIRSAYPKWSPAAIKSAI--MTTADGND-HFGKPIMD 608
HV+G ALI S +P W+ ++S++ TT G+ ++GK +++
Sbjct: 214 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 257
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I + P N + +GT MA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTXMASP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAI--MTTADGND-HFGKPIMD 608
HV+G ALI S +P W+ ++S++ TT G+ ++GK +++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I + P N + +GT MA P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTXMASP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAI--MTTADGND-HFGKPIMD 608
HV+G ALI S +P W+ ++S++ TT G+ ++GK +++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ GP L DV+APGV+I + P N + +GTS A P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTSXASP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAI--MTTADGND-HFGKPIMD 608
HV+G ALI S +P W+ ++S++ TT G+ ++GK +++
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLIN 269
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS G L D++APGVN+ + +P + + ++GTSMA P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYPGST-------------YASLNGTSMATP 219
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTA 596
HV+G AL++ P WS I++ + TA
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS G L D++APGVN+ + +P + + ++GTSMA P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYPGST-------------YASLNGTSMATP 219
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTA 596
HV+G AL++ P WS I++ + TA
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS G L D++APGVN+ + +P + + ++GTSMA P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYPGST-------------YASLNGTSMATP 219
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTA 596
HV+G AL++ P WS I++ + TA
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS G L D++APGVN+ + +P + + ++GTSMA P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYPGST-------------YASLNGTSMATP 219
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTA 596
HV+G AL++ P WS I++ + TA
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS G L D++APGVN+ + +P + + ++GTSMA P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYPGST-------------YASLNGTSMATP 219
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTA 596
HV+G AL++ P WS I++ + TA
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 16/115 (13%)
Query: 507 VAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMAC 566
VAQFS+RGP+ +KPDV+APG I++A +L P S N + GTS A
Sbjct: 202 VAQFSSRGPT--KDGRIKPDVMAPGTFILSA-RSSLAPDSSFWANHDSKYAYXGGTSXAT 258
Query: 567 PHVSGITALIRSAYPKW-----SPAAIKSAIMTTA--------DGNDHFGKPIMD 608
P V+G A +R + K P+ +K+A++ A +GN +G+ +D
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGYPNGNQGWGRVTLD 313
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 21/89 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS G L D++APGVN+ + +P + + ++GT MA P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYPGST-------------YASLNGTXMATP 219
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTA 596
HV+G AL++ P WS I++ + TA
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 21/89 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS G L D++APGVN+ + +P + + ++GT MA P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYPGST-------------YASLNGTXMATP 219
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTA 596
HV+G AL++ P WS I++ + TA
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 21/89 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS G L D++APGVN+ + +P + + ++GT MA P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYPGST-------------YASLNGTXMATP 219
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTA 596
HV+G AL++ P WS I++ + TA
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 21/89 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS G L D++APGVN+ + +P + + ++GT MA P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYPGST-------------YASLNGTXMATP 219
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTA 596
HV+G AL++ P WS I++ + TA
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ G L DV+APGV+I S+LP + +GT MA P
Sbjct: 187 ASFSSVGSEL--------DVMAPGVSI---------QSTLPGGT----YGAYNGTXMATP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTAD--GND-HFGKPIMD 608
HV+G ALI S +P W+ A ++ + +TA GN ++GK +++
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLGNSFYYGKGLIN 269
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 24/104 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ G L DV+APGV+I S+LP + +GT MA P
Sbjct: 187 ASFSSAGSEL--------DVMAPGVSI---------QSTLPGGT----YGAYNGTCMATP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTAD--GND-HFGKPIMD 608
HV+G ALI S +P W+ A ++ + +TA GN ++GK +++
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLGNSFYYGKGLIN 269
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ G L DV+APGV+I S+LP + +GTSMA P
Sbjct: 187 ASFSSAGSEL--------DVMAPGVSI---------QSTLPGGT----YGAYNGTSMATP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTA 596
HV+G ALI S +P W+ A ++ + +TA
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTA 254
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ G L +V+APG + + +P N + ++GTSMA P
Sbjct: 187 ASFSSVGAEL--------EVMAPGAGVYSTYPTN-------------TYATLNGTSMASP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTA 596
HV+G ALI S +P S + +++ + +TA
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTA 254
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ G L +V+APG + + +P N + ++GTSMA P
Sbjct: 187 ASFSSVGAEL--------EVMAPGAGVYSTYPTN-------------TYATLNGTSMASP 225
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTA 596
HV+G ALI S +P S + +++ + +TA
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTA 254
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ G L +V+APG + + +P N + ++GTSMA P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTN-------------TYATLNGTSMASP 224
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTA 596
HV+G ALI S +P S + +++ + +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ G L +V+APG + + +P N + ++GTSMA P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTN-------------TYATLNGTSMASP 224
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTA 596
HV+G ALI S +P S + +++ + +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ G L +V+APG + + +P N + ++GTSMA P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTN-------------TYATLNGTSMASP 224
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTA 596
HV+G ALI S +P S + +++ + +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ G L +V+APG + + +P N + ++GTSMA P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTN-------------TYATLNGTSMASP 224
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTA 596
HV+G ALI S +P S + +++ + +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 79/360 (21%), Positives = 139/360 (38%), Gaps = 53/360 (14%)
Query: 260 RGMAPGAHIAVYKVCWFNGC--YSSDILAAMDVAIRDGVDVXXXXXXXXXXXXXD--DSI 315
G P A + + +V NG Y+ + A+ AI G V + D
Sbjct: 111 EGAXPEAQLLLXRVEIVNGLADYARNYAQAIRDAINLGAKVINXSFGNAALAYANLPDET 170
Query: 316 AIGSFRAMEHGISVVCAAGNN----GPLQSSVAN-----------IAPWIATVGASTLDR 360
A G+S+V +AGN+ G + +A+ A TV + + D+
Sbjct: 171 KKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDK 230
Query: 361 RFPAIVRMADGGLLYGES-MYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRG 419
+ VR+ E + N+F + K D Y G +F +V+G
Sbjct: 231 QLTETVRVKTADQQDKEXPVLSTNRF-EPNKAYDYAYANRGTKEDDF--------KDVKG 281
Query: 420 KMVVCDRG-VNGRAEKGQVVKEAGGAAMILANTEINLEEDSVDVHVLPATLVGFAESVRL 478
K+ + +RG ++ + + + K +I N + + +V PA + + + L
Sbjct: 282 KIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQXPAAFISRKDGLLL 341
Query: 479 KVYINSTRRARARIIFGGT--VIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIA 536
K + I F T V+ + +++FS+ G L +KPD+ APG +I++
Sbjct: 342 K------DNPQKTITFNATPKVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILS 393
Query: 537 AWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTA 596
+ N + +SGTS + P V+GI L++ Y P S + A
Sbjct: 394 SVANN-------------KYAKLSGTSXSAPLVAGIXGLLQKQYETQYPDXTPSERLDLA 440
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 507 VAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMAC 566
+A FS R +P+V APGV+I++ +P + ++ + GT+MA
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 247
Query: 567 PHVSGITALIRSAY 580
PHVSG+ ALI++AY
Sbjct: 248 PHVSGVVALIQAAY 261
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 507 VAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMAC 566
+A FS R +P+V APGV+I++ +P + ++ + GT+MA
Sbjct: 213 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 249
Query: 567 PHVSGITALIRSAY 580
PHVSG+ ALI++AY
Sbjct: 250 PHVSGVVALIQAAY 263
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 507 VAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMAC 566
+A FS R +P+V APGV+I++ +P + ++ + GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 327
Query: 567 PHVSGITALIRSAY 580
PHVSG+ ALI++AY
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 507 VAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMAC 566
+A FS R +P+V APGV+I++ +P + ++ + GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 327
Query: 567 PHVSGITALIRSAY 580
PHVSG+ ALI++AY
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 507 VAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMAC 566
+A FS R +P+V APGV+I++ +P + ++ + GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 327
Query: 567 PHVSGITALIRSAY 580
PHVSG+ ALI++AY
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 507 VAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMAC 566
+A FS R +P+V APGV+I++ +P + ++ + GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 327
Query: 567 PHVSGITALIRSAY 580
PHVSG+ ALI++AY
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 507 VAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMAC 566
+A FS R +P+V APGV+I++ +P + ++ + GT+MA
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 258
Query: 567 PHVSGITALIRSAY 580
PHVSG+ ALI++AY
Sbjct: 259 PHVSGVVALIQAAY 272
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 515 PSLYTPTIL--KPDVIAPGVNII----AAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPH 568
P L P ++ D+ P V++ A LG S+ + ++ +GTSMA PH
Sbjct: 315 PGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPH 374
Query: 569 VSGITALIRSAYPKWSPAAIKSAIMTTAD 597
VSG+ L+ S +P+ S + +++A+ TAD
Sbjct: 375 VSGVATLVWSYHPECSASQVRAALNATAD 403
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 507 VAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMAC 566
+A FS R +P+V APGV+I++ +P + ++ + GT+MA
Sbjct: 288 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 324
Query: 567 PHVSGITALIRSAY 580
PHVSG+ ALI++AY
Sbjct: 325 PHVSGVVALIQAAY 338
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 507 VAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMAC 566
+A FS R +P+V APGV+I++ +P + ++ + GT+MA
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 258
Query: 567 PHVSGITALIRSAY 580
PHVSG+ ALI++AY
Sbjct: 259 PHVSGVVALIQAAY 272
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 23/74 (31%)
Query: 507 VAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMAC 566
+A FS R +P+V APGV+I++ +P + ++ + GT MA
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTXMAT 247
Query: 567 PHVSGITALIRSAY 580
PHVSG+ ALI++AY
Sbjct: 248 PHVSGVVALIQAAY 261
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 23/74 (31%)
Query: 507 VAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMAC 566
+A FS R +P+V APGV+I++ +P + ++ + GT MA
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTCMAT 247
Query: 567 PHVSGITALIRSAY 580
PHVSG+ ALI++AY
Sbjct: 248 PHVSGVVALIQAAY 261
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 49/110 (44%), Gaps = 23/110 (20%)
Query: 487 RARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSS 546
RA I G T SR+ FS G L D+ APG +I ++W +
Sbjct: 171 RAADAITVGSTTSNDSRS----SFSNYGTCL--------DIYAPGSSITSSWYTS----- 213
Query: 547 LPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTA 596
N N +SGTSMA PHV+G+ AL P SPA + + + T A
Sbjct: 214 ----NSATN--TISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRA 257
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 508 AQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACP 567
A FS+ G L +V+APG + + +P N + ++GT MA P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTN-------------TYATLNGTXMASP 224
Query: 568 HVSGITALIRSAYPKWSPAAIKSAIMTTA 596
HV+G ALI S +P S + +++ + +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 19/114 (16%)
Query: 483 NSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNL 542
N+ + AR+ TV + + A A FS G + D+ APG +I +AW +
Sbjct: 161 NACNYSPARVAEALTVGATTSSDARASFSNYGSCV--------DLFAPGASIPSAWYTS- 211
Query: 543 GPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTA 596
++GTSMA PHV+G+ AL P +PA++ SAI+ A
Sbjct: 212 ----------DTATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGA 255
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 15/72 (20%)
Query: 526 DVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSP 585
DV+APGV+I+ S NR + MSGTSMA PHV+G+ AL+ S +
Sbjct: 202 DVVAPGVDIV----------STITGNR---YAYMSGTSMASPHVAGLAALLAS--QGRNN 246
Query: 586 AAIKSAIMTTAD 597
I+ AI TAD
Sbjct: 247 IEIRQAIEQTAD 258
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 507 VAQFSARGPSLYTPTILKPDVIAPGVNIIAAWP--QNLGPSSLPEDNRRVN---FTVMSG 561
VA FS+R + V APGV I++ P ++G E+ N + G
Sbjct: 328 VAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQG 379
Query: 562 TSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTA-----DGNDH 601
TSMA PHV+G+ A++ +P P I+ + TA +G DH
Sbjct: 380 TSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWDH 424
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 16/77 (20%)
Query: 526 DVIAPGVNIIAAWPQNLGPSSLPEDNRR---VNFTVMSGTSMACPHVSGITALIRSAY-- 580
D+ APG +I+ S++ RR ++ M+GTSMA PHVSG+ AL+ SA
Sbjct: 245 DLAAPGQDIL---------STVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANS 295
Query: 581 --PKWSPAAIKSAIMTT 595
+PA +K +++T
Sbjct: 296 VNKNLTPAELKDVLVST 312
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 16/77 (20%)
Query: 526 DVIAPGVNIIAAWPQNLGPSSLPEDNRR---VNFTVMSGTSMACPHVSGITALIRSAY-- 580
D+ APG +I+ S++ RR ++ M+GTSMA PHVSG+ AL+ SA
Sbjct: 245 DLAAPGQDIL---------STVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANS 295
Query: 581 --PKWSPAAIKSAIMTT 595
+PA +K +++T
Sbjct: 296 VNKNLTPAELKDVLVST 312
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 16/77 (20%)
Query: 526 DVIAPGVNIIAAWPQNLGPSSLPEDNRR---VNFTVMSGTSMACPHVSGITALIRSAY-- 580
D+ APG +I+ S++ RR ++ M+GTSMA PHVSG+ AL+ SA
Sbjct: 245 DLAAPGQDIL---------STVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANS 295
Query: 581 --PKWSPAAIKSAIMTT 595
+PA +K +++T
Sbjct: 296 VNKNLTPAELKDVLVST 312
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 15/72 (20%)
Query: 526 DVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSP 585
DV APG +I + +P + + +SGTSMA PHV+G+ L+ S S
Sbjct: 201 DVAAPGSSIYSTYPTST-------------YASLSGTSMATPHVAGVAGLLAS--QGRSA 245
Query: 586 AAIKSAIMTTAD 597
+ I++AI TAD
Sbjct: 246 SNIRAAIENTAD 257
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 50/122 (40%), Gaps = 22/122 (18%)
Query: 507 VAQFSARGPSLYTP--TILKPDV--IAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGT 562
VA FS+RG I K DV APG + + W + +SGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFDG-------------GYATISGT 248
Query: 563 SMACPHVSGITALIRSAYPKWSPAAIKSAIMTTADGNDHFGKPIMDGNKPPAVKAINPGL 622
SMA PH +G+ A I + P S ++ + T A ND I+ GN + I G
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVND-----ILSGNSAGSGDDIASGF 303
Query: 623 IY 624
+
Sbjct: 304 GF 305
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 15/72 (20%)
Query: 526 DVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSP 585
DV APG I + +P + + +SGTSMA PHV+G+ L+ S S
Sbjct: 201 DVAAPGSWIYSTYPTST-------------YASLSGTSMATPHVAGVAGLLAS--QGRSA 245
Query: 586 AAIKSAIMTTAD 597
+ I++AI TAD
Sbjct: 246 SNIRAAIENTAD 257
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 558 VMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTADGNDHFGKPIM 607
VM+GTS A P SG AL+ SAYP S ++ + +A D +P+M
Sbjct: 331 VMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVM 380
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 20/109 (18%)
Query: 507 VAQFSARG----PSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGT 562
VA +S+RG Y ++ APG ++ + W + +SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNG-------------GYNTISGT 249
Query: 563 SMACPHVSGITALIRSAYPKWSPAAIKSAIMTTADGND---HFGKPIMD 608
SMA PHVSG+ A I + P S ++S + A D +G I D
Sbjct: 250 SMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGD 298
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 13/61 (21%)
Query: 516 SLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITAL 575
S +T T + D++APGV I + + + + +SGT+MA PHV+G AL
Sbjct: 216 SDFTNTNEEIDIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALAL 262
Query: 576 I 576
I
Sbjct: 263 I 263
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 13/61 (21%)
Query: 516 SLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITAL 575
S +T T + D++APGV I + + + + +SGT+MA PHV+G AL
Sbjct: 216 SDFTNTNEEIDIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALAL 262
Query: 576 I 576
I
Sbjct: 263 I 263
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 13/61 (21%)
Query: 516 SLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITAL 575
S +T T + D++APGV I + + + + +SGT+MA PHV+G AL
Sbjct: 198 SDFTNTNEEIDIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALAL 244
Query: 576 I 576
I
Sbjct: 245 I 245
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 13/61 (21%)
Query: 516 SLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITAL 575
S +T T + D++APGV I + + + + +SGT+MA PHV+G AL
Sbjct: 216 SDFTNTNEEIDIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALAL 262
Query: 576 I 576
I
Sbjct: 263 I 263
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 527 VIAPGVNIIAAWP-QNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSA 579
+ APG NI++ GP R ++ + +GTSMA PHVSG+ AL+ SA
Sbjct: 247 LAAPGTNILSTIDVGQAGPV-------RSSYGMKAGTSMAAPHVSGVAALVISA 293
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 20/109 (18%)
Query: 507 VAQFSARG----PSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGT 562
VA +S+RG Y ++ APG ++ + W + +SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNG-------------GYNTISGT 249
Query: 563 SMACPHVSGITALIRSAYPKWSPAAIKSAIMTTADGND---HFGKPIMD 608
MA PHVSG+ A I + P S ++S + A D +G I D
Sbjct: 250 XMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGD 298
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 527 VIAPGVNIIAAWP-QNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSA 579
+ APG NI++ GP R ++ + +GTSMA PHVSG+ AL+ SA
Sbjct: 247 LAAPGTNILSTIDVGQAGPV-------RSSYGMKAGTSMAAPHVSGVAALVISA 293
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 13/50 (26%)
Query: 526 DVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITAL 575
D+ APG I +AW + +SGTSMA PHV+G+ AL
Sbjct: 196 DLFAPGSQIKSAWYDG-------------GYKTISGTSMATPHVAGVAAL 232
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
Query: 527 VIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPK---- 582
V APG IA+ PQ S + +GTS A PHV+G AL+ S +
Sbjct: 437 VCAPG-GAIASVPQFTXSKS----------QLXNGTSXAAPHVAGAVALLISGLKQQNIE 485
Query: 583 WSPAAIKSAIMTTA 596
+SP +IK AI TA
Sbjct: 486 YSPYSIKRAISVTA 499
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 526 DVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALI 576
D+ PG +I++ W +G S+ +SGTSMA PHV+G+ A +
Sbjct: 200 DIFGPGTDILSTW---IGGSTRS----------ISGTSMATPHVAGLAAYL 237
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 136 SPTNGGAWYESQFGHGSIIGVLDTGIWPESPSFD 169
SP +Y+ G GS + V+DTGI P F+
Sbjct: 17 SPGTSTYYYDESAGQGSCVYVIDTGIEASHPEFE 50
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 526 DVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSP 585
D+ PG +I++ W +G S+ +SGTSMA PHV+G+ A + + K +
Sbjct: 200 DIFGPGTSILSTW---IGGSTRS----------ISGTSMATPHVAGLAAYLMT-LGKTTA 245
Query: 586 AAIKSAIMTTADGND 600
A+ I TA+ D
Sbjct: 246 ASACRYIADTANKGD 260
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 136 SPTNGGAWYESQFGHGSIIGVLDTGIWPESPSFD 169
SP +Y+ G GS + V+DTGI P F+
Sbjct: 17 SPGTSTYYYDESAGQGSCVYVIDTGIEASHPEFE 50
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 526 DVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALI 576
D+ APG NI++ W +G ++ +SGTSMA PH+ G+ A +
Sbjct: 203 DIFAPGSNILSTW---IGGTT----------NTISGTSMATPHIVGLGAYL 240
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 526 DVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALI 576
D+ PG +I++ W +G S+ +SGTSMA PHV+G+ A +
Sbjct: 200 DIFGPGTSILSTW---IGGSTRS----------ISGTSMATPHVAGLAAYL 237
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 136 SPTNGGAWYESQFGHGSIIGVLDTGIWPESPSFD 169
SP +Y+ G GS + V+DTGI P F+
Sbjct: 17 SPGTSTYYYDESAGQGSCVYVIDTGIEASHPEFE 50
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 13/51 (25%)
Query: 526 DVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALI 576
D+ APG +I + W R N +SGTSMA PH++G+ A +
Sbjct: 201 DIFAPGTSITSTWIGG-----------RTN--TISGTSMATPHIAGLAAYL 238
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 17/77 (22%)
Query: 524 KPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAY--- 580
K ++APG +I+ A P +SGTS A P VSG+ AL+ S
Sbjct: 198 KQGILAPGKDILGAKPNG-------------GTIRLSGTSFATPIVSGVAALLLSLQIKR 244
Query: 581 -PKWSPAAIKSAIMTTA 596
K P +K+A++ +A
Sbjct: 245 GEKPDPQKVKNALLASA 261
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
Query: 524 KPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKW 583
K ++APG I+ A P P L +GTSMA P ++GI+AL+ S +
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 312
Query: 584 ----SPAAIKSAIMTTA 596
A+++A++ TA
Sbjct: 313 GKPVDAEAVRTALLKTA 329
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
Query: 524 KPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKW 583
K ++APG I+ A P P L +GTSMA P ++GI+AL+ S +
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 312
Query: 584 ----SPAAIKSAIMTTA 596
A+++A++ TA
Sbjct: 313 GKPVDAEAVRTALLKTA 329
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
Query: 524 KPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKW 583
K ++APG I+ A P P L +GTSMA P ++GI+AL+ S +
Sbjct: 247 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 294
Query: 584 ----SPAAIKSAIMTTA 596
A+++A++ TA
Sbjct: 295 GKPVDAEAVRTALLKTA 311
>pdb|2H6O|A Chain A, Epstein Barr Virus Major Envelope Glycoprotein
Length = 470
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 520 PTILKPDVIAPGVNIIA--AWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIR 577
P + D +P V + A AWP N E + + +T+ SGT C ++SG A R
Sbjct: 334 PMVTSEDANSPNVTVTAFWAWPNNT------ETDFKCKWTLTSGTPSGCENISGAFASNR 387
Query: 578 S 578
+
Sbjct: 388 T 388
>pdb|2B5U|A Chain A, Crystal Structure Of Colicin E3 V206c Mutant In Complex
With Its Immunity Protein
pdb|2B5U|C Chain C, Crystal Structure Of Colicin E3 V206c Mutant In Complex
With Its Immunity Protein
Length = 551
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 20/99 (20%)
Query: 551 NRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTADGNDHFGKPIMD-- 608
+ R N +V+SG M+CP V A P P ++I G P+++
Sbjct: 191 DERQNISVVSGVPMSCPVV--------DAKPTERPGVFTASIP---------GAPVLNIS 233
Query: 609 -GNKPPAVKAINPGLIYDITPDEYVTHLCTLGYTESEIF 646
N PAV+ ++PG+ + D G T +
Sbjct: 234 VNNSTPAVQTLSPGVTNNTDKDVRPAGFTQGGNTRDAVI 272
>pdb|2IY9|A Chain A, Crystal Structure Of The A-Subunit Of The Ab5 Toxin From
E. Coli
Length = 347
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
Query: 526 DVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSP 585
D+ APG NI P SGTS A VSG+ A + S P+ +
Sbjct: 248 DIAAPGQNITFLRPD-------------AKTGTGSGTSEATAIVSGVLAAMTSCNPRATA 294
Query: 586 AAIKSAIMTTADGNDHFGKPIMDGNKPPAVKAIN 619
+K ++ +AD + +G A KAI+
Sbjct: 295 TELKRTLLESADKYPSLVDKVTEGRVLNAEKAIS 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,796,729
Number of Sequences: 62578
Number of extensions: 889259
Number of successful extensions: 1971
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1678
Number of HSP's gapped (non-prelim): 223
length of query: 773
length of database: 14,973,337
effective HSP length: 106
effective length of query: 667
effective length of database: 8,340,069
effective search space: 5562826023
effective search space used: 5562826023
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)