Query 004101
Match_columns 773
No_of_seqs 471 out of 3116
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 17:34:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 1.7E-52 3.8E-57 450.6 30.2 305 122-597 1-307 (307)
2 cd07479 Peptidases_S8_SKI-1_li 100.0 2.1E-48 4.6E-53 406.3 24.0 243 143-600 1-254 (255)
3 cd07497 Peptidases_S8_14 Pepti 100.0 2.3E-48 5.1E-53 414.9 24.5 286 149-596 1-311 (311)
4 PTZ00262 subtilisin-like prote 100.0 4.3E-48 9.3E-53 432.1 22.3 278 130-601 293-595 (639)
5 cd07478 Peptidases_S8_CspA-lik 100.0 3.1E-47 6.7E-52 426.4 21.6 400 147-601 1-444 (455)
6 cd07476 Peptidases_S8_thiazoli 100.0 4.8E-46 1E-50 390.4 24.2 248 142-603 2-256 (267)
7 cd05562 Peptidases_S53_like Pe 100.0 2.2E-45 4.7E-50 386.4 24.3 253 146-603 1-257 (275)
8 KOG1153 Subtilisin-related pro 100.0 8.5E-46 1.8E-50 385.3 17.0 333 39-597 77-461 (501)
9 cd07483 Peptidases_S8_Subtilis 100.0 8.3E-45 1.8E-49 386.9 24.0 271 150-597 1-291 (291)
10 cd07493 Peptidases_S8_9 Peptid 100.0 1.5E-44 3.3E-49 380.0 24.3 243 151-597 1-261 (261)
11 cd07481 Peptidases_S8_Bacillop 100.0 2.2E-44 4.7E-49 379.4 24.5 247 149-597 1-264 (264)
12 cd07475 Peptidases_S8_C5a_Pept 100.0 4.6E-44 1E-48 392.2 27.3 284 141-598 1-318 (346)
13 cd05561 Peptidases_S8_4 Peptid 100.0 1.6E-44 3.4E-49 373.8 22.0 228 152-605 1-233 (239)
14 cd04857 Peptidases_S8_Tripepti 100.0 5.5E-44 1.2E-48 388.0 27.0 220 228-599 182-412 (412)
15 cd07485 Peptidases_S8_Fervidol 100.0 1.5E-43 3.2E-48 374.9 25.0 263 141-595 1-273 (273)
16 cd07489 Peptidases_S8_5 Peptid 100.0 4.9E-43 1.1E-47 378.2 26.5 265 140-603 3-272 (312)
17 cd07487 Peptidases_S8_1 Peptid 100.0 5.4E-43 1.2E-47 369.3 25.4 256 149-597 1-264 (264)
18 cd04077 Peptidases_S8_PCSK9_Pr 100.0 6.2E-43 1.3E-47 366.7 25.2 232 142-598 17-255 (255)
19 cd07484 Peptidases_S8_Thermita 100.0 1.1E-42 2.4E-47 365.9 24.2 241 139-599 18-259 (260)
20 cd07474 Peptidases_S8_subtilis 100.0 6.3E-42 1.4E-46 367.1 28.5 272 149-603 1-276 (295)
21 cd04847 Peptidases_S8_Subtilis 100.0 9.3E-43 2E-47 372.3 20.1 230 227-597 34-291 (291)
22 cd07496 Peptidases_S8_13 Pepti 100.0 5.3E-42 1.1E-46 365.4 25.6 208 225-595 65-285 (285)
23 cd07490 Peptidases_S8_6 Peptid 100.0 4.4E-42 9.6E-47 360.2 24.5 253 151-597 1-254 (254)
24 cd04842 Peptidases_S8_Kp43_pro 100.0 2.1E-41 4.6E-46 362.7 25.8 277 145-597 2-293 (293)
25 cd07494 Peptidases_S8_10 Pepti 100.0 1.3E-41 2.9E-46 362.2 23.2 253 139-602 10-288 (298)
26 cd07498 Peptidases_S8_15 Pepti 100.0 2.8E-41 6E-46 351.5 22.5 239 152-595 1-242 (242)
27 cd04843 Peptidases_S8_11 Pepti 100.0 7.8E-41 1.7E-45 352.3 21.8 245 139-597 4-277 (277)
28 cd07473 Peptidases_S8_Subtilis 100.0 3.3E-40 7.1E-45 347.1 25.4 249 150-597 2-259 (259)
29 cd07477 Peptidases_S8_Subtilis 100.0 4.6E-40 1E-44 339.4 23.4 226 151-595 1-229 (229)
30 cd07491 Peptidases_S8_7 Peptid 100.0 1.7E-40 3.6E-45 344.2 20.1 156 149-357 2-170 (247)
31 cd07480 Peptidases_S8_12 Pepti 100.0 2.2E-39 4.7E-44 347.1 24.1 145 144-340 2-172 (297)
32 cd07482 Peptidases_S8_Lantibio 100.0 3.8E-39 8.1E-44 345.5 23.2 150 151-340 1-159 (294)
33 cd07492 Peptidases_S8_8 Peptid 100.0 4.6E-39 1E-43 330.3 22.8 221 151-597 1-222 (222)
34 cd04059 Peptidases_S8_Protein_ 100.0 2.5E-39 5.3E-44 347.4 18.8 248 139-597 28-297 (297)
35 cd04848 Peptidases_S8_Autotran 100.0 7E-38 1.5E-42 330.5 21.5 242 148-597 1-267 (267)
36 PF00082 Peptidase_S8: Subtila 100.0 5.6E-37 1.2E-41 326.6 18.3 251 153-600 1-259 (282)
37 KOG4266 Subtilisin kexin isozy 100.0 8E-36 1.7E-40 318.2 17.1 342 42-603 49-449 (1033)
38 cd07488 Peptidases_S8_2 Peptid 100.0 4.4E-33 9.5E-38 287.7 15.6 194 227-595 33-246 (247)
39 cd00306 Peptidases_S8_S53 Pept 100.0 4.1E-31 8.9E-36 273.3 23.9 196 226-595 39-241 (241)
40 KOG1114 Tripeptidyl peptidase 100.0 1.2E-30 2.7E-35 290.2 23.3 240 231-633 310-560 (1304)
41 COG1404 AprE Subtilisin-like s 99.9 1.5E-23 3.3E-28 240.6 21.2 250 139-598 129-398 (508)
42 KOG3526 Subtilisin-like propro 99.8 2.4E-20 5.3E-25 190.2 10.3 155 139-339 150-316 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 2.4E-17 5.1E-22 181.0 14.7 101 258-361 82-199 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.3 4.4E-11 9.5E-16 113.7 12.0 117 389-517 25-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.2 2.9E-10 6.4E-15 105.7 12.6 121 366-491 2-125 (126)
46 PF05922 Inhibitor_I9: Peptida 98.9 2.6E-09 5.7E-14 91.2 6.7 82 44-125 1-82 (82)
47 PF06280 DUF1034: Fn3-like dom 98.8 2.9E-08 6.3E-13 90.2 11.8 87 680-769 7-112 (112)
48 cd04816 PA_SaNapH_like PA_SaNa 98.7 6.9E-08 1.5E-12 89.1 10.9 99 390-490 17-120 (122)
49 cd02127 PA_hPAP21_like PA_hPAP 98.6 2.2E-07 4.8E-12 84.7 10.2 88 405-493 22-117 (118)
50 cd02122 PA_GRAIL_like PA _GRAI 98.6 1.9E-07 4E-12 87.6 9.8 87 405-491 45-137 (138)
51 cd02129 PA_hSPPL_like PA_hSPPL 98.6 2.6E-07 5.6E-12 83.8 9.0 91 390-484 20-114 (120)
52 cd04818 PA_subtilisin_1 PA_sub 98.6 3.4E-07 7.3E-12 84.1 9.8 86 405-491 28-117 (118)
53 PF02225 PA: PA domain; Inter 98.6 1.1E-07 2.4E-12 84.5 6.3 92 390-482 6-101 (101)
54 cd02130 PA_ScAPY_like PA_ScAPY 98.5 5.9E-07 1.3E-11 82.9 9.5 96 390-491 22-121 (122)
55 cd02126 PA_EDEM3_like PA_EDEM3 98.5 6E-07 1.3E-11 83.1 9.6 85 405-490 28-124 (126)
56 cd00538 PA PA: Protease-associ 98.5 7.5E-07 1.6E-11 82.6 9.4 86 405-490 31-124 (126)
57 cd02124 PA_PoS1_like PA_PoS1_l 98.5 3E-06 6.5E-11 78.6 13.1 98 392-490 28-127 (129)
58 cd04817 PA_VapT_like PA_VapT_l 98.4 1.2E-06 2.5E-11 81.9 10.1 75 411-485 49-134 (139)
59 cd02125 PA_VSR PA_VSR: Proteas 98.4 1.5E-06 3.4E-11 80.3 9.5 87 405-491 23-126 (127)
60 cd02132 PA_GO-like PA_GO-like: 98.4 1.7E-06 3.7E-11 81.6 9.5 83 405-490 49-137 (139)
61 COG4934 Predicted protease [Po 98.4 6.2E-06 1.3E-10 98.7 15.8 94 259-355 288-395 (1174)
62 cd04813 PA_1 PA_1: Protease-as 98.3 2.6E-06 5.6E-11 77.6 8.6 78 405-484 28-111 (117)
63 cd02123 PA_C_RZF_like PA_C-RZF 98.2 4.9E-06 1.1E-10 79.8 9.4 83 405-487 51-142 (153)
64 KOG3525 Subtilisin-like propro 98.1 9.9E-06 2.1E-10 90.2 10.6 157 139-340 22-188 (431)
65 cd04819 PA_2 PA_2: Protease-as 97.9 0.00011 2.4E-09 68.2 10.9 92 389-487 22-122 (127)
66 cd04815 PA_M28_2 PA_M28_2: Pro 97.3 0.00089 1.9E-08 62.7 8.1 78 413-490 34-132 (134)
67 cd02128 PA_TfR PA_TfR: Proteas 96.7 0.0055 1.2E-07 59.9 8.2 70 414-483 51-154 (183)
68 PF14874 PapD-like: Flagellar- 96.6 0.053 1.1E-06 48.0 13.2 82 680-771 19-100 (102)
69 cd04814 PA_M28_1 PA_M28_1: Pro 96.2 0.014 3E-07 54.9 7.1 64 389-453 19-100 (142)
70 cd04820 PA_M28_1_1 PA_M28_1_1: 95.9 0.025 5.4E-07 52.9 7.3 64 389-453 21-96 (137)
71 PF10633 NPCBM_assoc: NPCBM-as 95.9 0.04 8.8E-07 46.3 7.7 60 681-740 5-65 (78)
72 cd04822 PA_M28_1_3 PA_M28_1_3: 95.6 0.039 8.5E-07 52.5 7.5 64 389-454 19-101 (151)
73 KOG2442 Uncharacterized conser 95.6 0.045 9.8E-07 60.0 8.6 79 414-492 91-175 (541)
74 KOG3920 Uncharacterized conser 94.6 0.047 1E-06 50.7 4.5 102 391-497 65-176 (193)
75 PF11614 FixG_C: IG-like fold 94.3 0.9 1.9E-05 41.4 12.4 57 682-739 32-88 (118)
76 cd02121 PA_GCPII_like PA_GCPII 93.8 0.12 2.5E-06 52.5 5.9 58 389-453 44-106 (220)
77 PF06030 DUF916: Bacterial pro 93.8 0.75 1.6E-05 42.2 10.6 78 671-754 18-119 (121)
78 cd02131 PA_hNAALADL2_like PA_h 93.4 0.11 2.4E-06 48.9 4.5 39 415-453 37-75 (153)
79 KOG4628 Predicted E3 ubiquitin 93.2 0.28 6E-06 52.7 7.9 81 405-485 63-150 (348)
80 COG1470 Predicted membrane pro 89.8 3.2 7E-05 46.0 11.4 85 666-754 381-468 (513)
81 PF00345 PapD_N: Pili and flag 85.4 9.8 0.00021 34.7 10.6 54 682-737 15-75 (122)
82 cd04821 PA_M28_1_2 PA_M28_1_2: 85.2 4 8.7E-05 39.2 8.0 43 411-453 42-103 (157)
83 TIGR02745 ccoG_rdxA_fixG cytoc 81.1 5.9 0.00013 44.7 8.5 56 682-738 347-402 (434)
84 KOG1114 Tripeptidyl peptidase 81.0 1.1 2.4E-05 53.2 2.8 51 715-771 636-687 (1304)
85 PF00635 Motile_Sperm: MSP (Ma 80.9 12 0.00025 33.2 9.0 54 682-738 19-72 (109)
86 COG1470 Predicted membrane pro 75.3 42 0.00091 37.6 12.5 57 682-739 285-347 (513)
87 PF07718 Coatamer_beta_C: Coat 74.6 28 0.00061 32.6 9.5 68 682-754 70-138 (140)
88 PF07610 DUF1573: Protein of u 70.2 18 0.00038 26.8 5.8 44 687-733 2-45 (45)
89 PF07705 CARDB: CARDB; InterP 66.9 26 0.00055 30.2 7.4 53 680-736 18-72 (101)
90 PF00927 Transglut_C: Transglu 58.1 69 0.0015 28.3 8.6 57 680-738 14-79 (107)
91 smart00635 BID_2 Bacterial Ig- 55.3 33 0.00073 28.7 5.7 38 710-755 4-41 (81)
92 PF05506 DUF756: Domain of unk 54.0 73 0.0016 27.2 7.7 46 683-733 20-65 (89)
93 PF05753 TRAP_beta: Translocon 51.9 1.5E+02 0.0033 29.2 10.5 58 680-738 37-100 (181)
94 PF12690 BsuPI: Intracellular 50.8 1.3E+02 0.0028 25.4 8.5 21 717-738 53-73 (82)
95 PRK13203 ureB urease subunit b 48.9 38 0.00083 29.7 5.0 16 682-697 19-34 (102)
96 PRK15098 beta-D-glucoside gluc 48.1 50 0.0011 40.4 7.8 74 663-738 642-730 (765)
97 TIGR00192 urease_beta urease, 46.5 46 0.001 29.2 5.1 16 682-697 19-34 (101)
98 PLN03080 Probable beta-xylosid 45.7 64 0.0014 39.5 8.2 82 682-767 685-778 (779)
99 cd00407 Urease_beta Urease bet 45.4 48 0.001 29.1 5.0 16 682-697 19-34 (101)
100 PF01345 DUF11: Domain of unkn 42.6 56 0.0012 26.8 5.1 32 680-711 40-72 (76)
101 PRK15308 putative fimbrial pro 41.0 1.4E+02 0.0029 30.9 8.5 53 683-736 33-101 (234)
102 PRK13202 ureB urease subunit b 39.9 60 0.0013 28.6 4.8 15 683-697 21-35 (104)
103 PF13598 DUF4139: Domain of un 39.1 1.3E+02 0.0029 32.2 8.7 25 682-706 243-267 (317)
104 PRK13205 ureB urease subunit b 36.4 80 0.0017 29.8 5.3 43 682-732 19-82 (162)
105 PRK13204 ureB urease subunit b 36.0 78 0.0017 29.9 5.2 16 682-697 42-57 (159)
106 PRK13201 ureB urease subunit b 35.8 85 0.0018 28.9 5.3 43 682-732 19-82 (136)
107 PF02845 CUE: CUE domain; Int 35.6 38 0.00083 24.4 2.6 24 573-596 5-28 (42)
108 COG0832 UreB Urea amidohydrola 34.8 96 0.0021 27.1 5.2 16 682-697 19-34 (106)
109 PF04744 Monooxygenase_B: Mono 34.3 2.5E+02 0.0055 30.7 9.4 52 680-735 262-335 (381)
110 TIGR01451 B_ant_repeat conserv 33.8 1.6E+02 0.0035 22.5 6.0 32 680-711 11-43 (53)
111 PF00699 Urease_beta: Urease b 33.2 85 0.0019 27.5 4.7 16 682-697 18-33 (100)
112 PF14742 GDE_N_bis: N-terminal 32.3 2.4E+02 0.0053 28.0 8.7 66 683-754 93-179 (194)
113 PRK15019 CsdA-binding activato 30.1 48 0.001 31.5 3.0 32 558-590 78-109 (147)
114 PRK13198 ureB urease subunit b 30.0 1.1E+02 0.0025 28.8 5.2 16 682-697 47-62 (158)
115 PF00553 CBM_2: Cellulose bind 28.9 3.9E+02 0.0085 23.3 8.8 30 683-712 15-45 (101)
116 TIGR03391 FeS_syn_CsdE cystein 28.7 54 0.0012 30.8 3.0 34 557-591 72-105 (138)
117 PF08260 Kinin: Insect kinin p 27.9 27 0.00058 16.0 0.4 6 509-514 3-8 (8)
118 PRK13192 bifunctional urease s 27.5 1E+02 0.0022 30.7 4.7 16 682-697 128-143 (208)
119 PF04255 DUF433: Protein of un 26.2 57 0.0012 25.3 2.3 39 555-593 10-54 (56)
120 PF08139 LPAM_1: Prokaryotic m 26.0 87 0.0019 20.2 2.6 16 18-33 5-20 (25)
121 PRK09296 cysteine desufuration 25.9 64 0.0014 30.3 3.0 32 558-590 68-99 (138)
122 COG2166 sufE Cysteine desulfur 25.1 62 0.0013 30.5 2.7 31 559-590 74-104 (144)
123 PF08821 CGGC: CGGC domain; I 25.0 3.6E+02 0.0077 24.1 7.4 45 260-306 31-76 (107)
124 PRK13986 urease subunit alpha; 24.3 1.2E+02 0.0026 30.5 4.7 43 682-732 124-187 (225)
125 PF13940 Ldr_toxin: Toxin Ldr, 24.3 58 0.0013 22.3 1.7 13 564-576 14-26 (35)
126 PF14646 MYCBPAP: MYCBP-associ 24.2 5.6E+02 0.012 28.9 10.8 68 670-738 235-314 (426)
127 PF02657 SufE: Fe-S metabolism 23.8 79 0.0017 29.1 3.2 33 558-591 59-91 (125)
128 PRK09918 putative fimbrial cha 23.3 3.4E+02 0.0074 27.8 8.1 53 682-735 39-94 (230)
129 TIGR03079 CH4_NH3mon_ox_B meth 23.1 84 0.0018 34.1 3.5 52 680-735 281-354 (399)
130 smart00546 CUE Domain that may 21.8 1.3E+02 0.0028 21.7 3.4 25 572-596 5-29 (43)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-52 Score=450.59 Aligned_cols=305 Identities=57% Similarity=0.892 Sum_probs=258.4
Q ss_pred cccccccCcccccCCCC-CCCCcccCCCCCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCcee
Q 004101 122 LQVQTTYSYKFLGLSPT-NGGAWYESQFGHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLI 200 (773)
Q Consensus 122 ~~~~~~~s~~~~g~~~~-~~~~~~~~~~G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kii 200 (773)
+++++++++.++++... ...+|..+++|+||+|||||||||++||+|.+.+..+++..|++.|..+..+....|++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 46889999999998762 12257779999999999999999999999999999999999999999998887777999999
Q ss_pred eeeecCCcccccCCCCCCCcccccCCCCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCC-CC
Q 004101 201 GARFFTKGHRVASTTMSPNIIQEYVSPRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFN-GC 279 (773)
Q Consensus 201 g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g~ 279 (773)
+.++|.+++..... .....+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++.. .+
T Consensus 81 g~~~~~~~~~~~~~---~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~ 157 (307)
T cd04852 81 GARYFSDGYDAYGG---FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGC 157 (307)
T ss_pred EEEEcccchhhccC---cccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCc
Confidence 99999876543211 122334466889999999999999999876666666666778999999999999999984 48
Q ss_pred CHHHHHHHHHHhhhCCCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEeCCCCCCCCCccccCCCceEEEcCcCCC
Q 004101 280 YSSDILAAMDVAIRDGVDVLSLSLGGFPLPLFDDSIAIGSFRAMEHGISVVCAAGNNGPLQSSVANIAPWIATVGASTLD 359 (773)
Q Consensus 280 ~~~~i~~ai~~A~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~ 359 (773)
..+++++||++|++++++|||||||......+.+.+..+.+.+.++|++||+||||+|+...+.++..||+++|||++
T Consensus 158 ~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~-- 235 (307)
T cd04852 158 FGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST-- 235 (307)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc--
Confidence 899999999999999999999999987645566778888888999999999999999988888888899999999621
Q ss_pred ccceeEEEeCCCeEEeeeeccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHH
Q 004101 360 RRFPAIVRMADGGLLYGESMYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVK 439 (773)
Q Consensus 360 ~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 439 (773)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEeccCCCCcccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCC
Q 004101 440 EAGGAAMILANTEINLEEDSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYT 519 (773)
Q Consensus 440 ~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~ 519 (773)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCceEeCCCceEeccCCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004101 520 PTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTAD 597 (773)
Q Consensus 520 ~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 597 (773)
+||||+|||.+|+++++.... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 236 ---~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 ---LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ---CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 477999999999999874311 112333378999999999999999999999999999999999999999985
No 2
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=2.1e-48 Score=406.32 Aligned_cols=243 Identities=30% Similarity=0.454 Sum_probs=197.3
Q ss_pred cccCCCCCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCccc
Q 004101 143 WYESQFGHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQ 222 (773)
Q Consensus 143 ~~~~~~G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~ 222 (773)
|.++++|+||+|||||||||.+||+|.+. +...+|...
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~----------------------------~~~~~~~~~-------------- 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV----------------------------KERTNWTNE-------------- 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc----------------------------ccccccCCC--------------
Confidence 88999999999999999999999999731 000111111
Q ss_pred ccCCCCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC-CCHHHHHHHHHHhhhCCCcEEEe
Q 004101 223 EYVSPRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG-CYSSDILAAMDVAIRDGVDVLSL 301 (773)
Q Consensus 223 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVIn~ 301 (773)
....|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ +..++++++++||+++++|||||
T Consensus 39 --~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~ 105 (255)
T cd07479 39 --KTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNL 105 (255)
T ss_pred --CCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEe
Confidence 2355778999999999998741 237999999999999998876 66778999999999999999999
Q ss_pred ccCCCCCCCcccHHHHHHHHHHhCCCEEEEeCCCCCCCCCc--cccCCCceEEEcCcCCCccceeEEEeCCCeEEeeeec
Q 004101 302 SLGGFPLPLFDDSIAIGSFRAMEHGISVVCAAGNNGPLQSS--VANIAPWIATVGASTLDRRFPAIVRMADGGLLYGESM 379 (773)
Q Consensus 302 SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~ 379 (773)
|||+.. .....+..++.++.++|++||+||||+|+...+ .+...+++|+|||++.+
T Consensus 106 S~G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~-------------------- 163 (255)
T cd07479 106 SIGGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD-------------------- 163 (255)
T ss_pred eccCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC--------------------
Confidence 999864 223455556667889999999999999975433 45667889999874311
Q ss_pred cCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCcccc
Q 004101 380 YPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDS 459 (773)
Q Consensus 380 ~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 459 (773)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCC----CCCcccCceEeCCCceE
Q 004101 460 VDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLY----TPTILKPDVIAPGVNII 535 (773)
Q Consensus 460 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~----~~~~~KPDI~APG~~I~ 535 (773)
+.++.|||+|++.. ..+++||||+|||.+|+
T Consensus 164 ---------------------------------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~ 198 (255)
T cd07479 164 ---------------------------------------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVY 198 (255)
T ss_pred ---------------------------------------------CccccccCCCCCcccccCCCCCcCccEEecCCCee
Confidence 26788999996531 25788999999999999
Q ss_pred eccCCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCC----CCCHHHHHHHHHhccccCC
Q 004101 536 AAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYP----KWSPAAIKSAIMTTADGND 600 (773)
Q Consensus 536 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P----~~s~~~ik~~L~~TA~~~~ 600 (773)
++... +.|..++|||||||||||++|||+|++| .++|++||++|++||+++.
T Consensus 199 ~~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 199 GSKLK-------------GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred ccccC-------------CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 87654 4788999999999999999999999999 7899999999999999875
No 3
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.3e-48 Score=414.91 Aligned_cols=286 Identities=30% Similarity=0.339 Sum_probs=189.7
Q ss_pred CCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcccccCCCC
Q 004101 149 GHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEYVSPR 228 (773)
Q Consensus 149 G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (773)
|+||+|||||||||++||||.+.... .|.. .|+ +..++..+.++..+. ...+.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~------~~d---~~~~~~~g~d~~~~~--------------~~~~~ 53 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKL------KFD---YKAYLLPGMDKWGGF--------------YVIMY 53 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Cccc------ccC---cCCCccCCcCCCCCc--------------cCCCC
Confidence 79999999999999999999743110 1110 010 001111111111110 12467
Q ss_pred CCCCCccchhhhhccccccccccccC-CCccccccccCCeEeEEeeecCCC-CCHHHHHH-------HHHHh--hhCCCc
Q 004101 229 DSTGHGTHTSSTAAGTSVSMASVLGN-AGGVARGMAPGAHIAVYKVCWFNG-CYSSDILA-------AMDVA--IRDGVD 297 (773)
Q Consensus 229 d~~gHGThVAGiiag~~~~~~~~~G~-~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~-------ai~~A--~~~g~d 297 (773)
|.+||||||||||||......+.+++ ....+.||||+|+|+++|++...+ .....+.. +++|+ .+++++
T Consensus 54 D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 133 (311)
T cd07497 54 DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVD 133 (311)
T ss_pred CccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCce
Confidence 89999999999999985433222221 123458999999999999997544 33333333 34443 467999
Q ss_pred EEEeccCCCCCCCc-----ccHHHHHHHH-HHhCCCEEEEeCCCCCCCCC--ccccCCCceEEEcCcCCCccceeEEEeC
Q 004101 298 VLSLSLGGFPLPLF-----DDSIAIGSFR-AMEHGISVVCAAGNNGPLQS--SVANIAPWIATVGASTLDRRFPAIVRMA 369 (773)
Q Consensus 298 VIn~SlG~~~~~~~-----~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~ 369 (773)
|||||||....... .+..+..... +.++|+++|+||||+|+... ..+..++++|+|||++.....
T Consensus 134 VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~------- 206 (311)
T cd07497 134 VISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYR------- 206 (311)
T ss_pred EEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCccc-------
Confidence 99999998642111 1222222222 24899999999999998643 456678999999997532210
Q ss_pred CCeEEeeeeccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEe
Q 004101 370 DGGLLYGESMYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILA 449 (773)
Q Consensus 370 ~g~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~ 449 (773)
..+...+
T Consensus 207 --------------------~~~~~~~----------------------------------------------------- 213 (311)
T cd07497 207 --------------------PFYLFGY----------------------------------------------------- 213 (311)
T ss_pred --------------------chhhhcc-----------------------------------------------------
Confidence 0000000
Q ss_pred ccCCCCcccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEe
Q 004101 450 NTEINLEEDSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIA 529 (773)
Q Consensus 450 ~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~A 529 (773)
.....+.++.||||||+. ++++||||+|
T Consensus 214 --------------------------------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~A 241 (311)
T cd07497 214 --------------------------------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAA 241 (311)
T ss_pred --------------------------------------------------ccCCCCCccccccCCCCc--ccCCCCceec
Confidence 001123789999999998 7999999999
Q ss_pred CCCceEeccCCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCC------CCCHHHHHHHHHhcc
Q 004101 530 PGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYP------KWSPAAIKSAIMTTA 596 (773)
Q Consensus 530 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P------~~s~~~ik~~L~~TA 596 (773)
||++|+++.+....... ......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 242 pG~~i~s~~~~~~~~~~---~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 242 IGAFAWAPGRVLDSGGA---LDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cCcceEeecccCCCCcc---cCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 99999998765421000 11124799999999999999999999999986 689999999999997
No 4
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=4.3e-48 Score=432.14 Aligned_cols=278 Identities=21% Similarity=0.181 Sum_probs=199.9
Q ss_pred cccccCCCC-CCCCcc--cCCCCCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCce---eeee
Q 004101 130 YKFLGLSPT-NGGAWY--ESQFGHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKL---IGAR 203 (773)
Q Consensus 130 ~~~~g~~~~-~~~~~~--~~~~G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~ki---ig~~ 203 (773)
...|+++.+ ++.+|. .+.+|+||+|||||||||++||||.++-... +....|. ++... +++.. +.++
T Consensus 293 ~~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~Gr-----dgiDd-D~nG~vdd~~G~ 365 (639)
T PTZ00262 293 NLQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGR-----KGIDD-DNNGNVDDEYGA 365 (639)
T ss_pred ccCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCc-----ccccc-ccCCcccccccc
Confidence 345777653 455665 4568999999999999999999998531100 0000110 00000 11111 1223
Q ss_pred ecCCcccccCCCCCCCcccccCCCCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC-CCHH
Q 004101 204 FFTKGHRVASTTMSPNIIQEYVSPRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG-CYSS 282 (773)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~ 282 (773)
+|.++. ..+.|.+||||||||||||...+ ...+.||||+|+|+++|+++..+ +..+
T Consensus 366 nfVd~~---------------~~P~D~~GHGTHVAGIIAA~gnN--------~~Gi~GVAP~AkLi~vKVld~~G~G~~s 422 (639)
T PTZ00262 366 NFVNND---------------GGPMDDNYHGTHVSGIISAIGNN--------NIGIVGVDKRSKLIICKALDSHKLGRLG 422 (639)
T ss_pred cccCCC---------------CCCCCCCCcchHHHHHHhccccC--------CCceeeeecccccceEEEecCCCCccHH
Confidence 333221 34688999999999999997432 22247999999999999999877 8889
Q ss_pred HHHHHHHHhhhCCCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEeCCCCCCCCCc--------------ccc---
Q 004101 283 DILAAMDVAIRDGVDVLSLSLGGFPLPLFDDSIAIGSFRAMEHGISVVCAAGNNGPLQSS--------------VAN--- 345 (773)
Q Consensus 283 ~i~~ai~~A~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------------~~~--- 345 (773)
++++||+||++.|++|||||||+.. +...+..++.+|.++|++||+||||+|..... ++.
T Consensus 423 dI~~AI~yA~~~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s 499 (639)
T PTZ00262 423 DMFKCFDYCISREAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILS 499 (639)
T ss_pred HHHHHHHHHHHCCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhh
Confidence 9999999999999999999999763 23456667778999999999999999864321 111
Q ss_pred -CCCceEEEcCcCCCccceeEEEeCCCeEEeeeeccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEE
Q 004101 346 -IAPWIATVGASTLDRRFPAIVRMADGGLLYGESMYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVC 424 (773)
Q Consensus 346 -~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~ 424 (773)
..+++|+|||++.+..
T Consensus 500 ~~~~nVIaVGAv~~d~~--------------------------------------------------------------- 516 (639)
T PTZ00262 500 KKLRNVITVSNLIKDKN--------------------------------------------------------------- 516 (639)
T ss_pred ccCCCEEEEeeccCCCC---------------------------------------------------------------
Confidence 1355666665431110
Q ss_pred ecCCCchhhHHHHHHHcCceEEEEeccCCCCcccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCC
Q 004101 425 DRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRA 504 (773)
Q Consensus 425 ~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~ 504 (773)
..
T Consensus 517 ------------------------------------------------------------------------------~~ 518 (639)
T PTZ00262 517 ------------------------------------------------------------------------------NQ 518 (639)
T ss_pred ------------------------------------------------------------------------------Cc
Confidence 00
Q ss_pred CccccccCCCCCCCCCCcccCceEeCCCceEeccCCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCCCC
Q 004101 505 PAVAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWS 584 (773)
Q Consensus 505 ~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s 584 (773)
...+.||++|.. ++||+|||++|+|+++. +.|..++|||||||||||+||||++++|+|+
T Consensus 519 ~s~s~~Snyg~~-------~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT 578 (639)
T PTZ00262 519 YSLSPNSFYSAK-------YCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLS 578 (639)
T ss_pred ccccccccCCCC-------cceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCC
Confidence 034456666632 35999999999999876 5799999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCC
Q 004101 585 PAAIKSAIMTTADGNDH 601 (773)
Q Consensus 585 ~~~ik~~L~~TA~~~~~ 601 (773)
+.||+++|++||.++..
T Consensus 579 ~~qV~~iL~~TA~~l~~ 595 (639)
T PTZ00262 579 YEEVIRILKESIVQLPS 595 (639)
T ss_pred HHHHHHHHHHhCccCCC
Confidence 99999999999988754
No 5
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=3.1e-47 Score=426.38 Aligned_cols=400 Identities=23% Similarity=0.250 Sum_probs=239.9
Q ss_pred CCCCccEEEEEccCCCCCCCCCC-CCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCc-ccccCCCCCCCccccc
Q 004101 147 QFGHGSIIGVLDTGIWPESPSFD-DHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKG-HRVASTTMSPNIIQEY 224 (773)
Q Consensus 147 ~~G~gv~VaVIDTGid~~Hp~f~-d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~-~~~~~~~~~~~~~~~~ 224 (773)
++|+||+|||||||||+.||+|. .+|.+|+...||+....+..- ....+...+.+. .+.... ...+.+.
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~~~---~~~p~~~ 71 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAALA---SDNPYDI 71 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHHHh---cCCcccc
Confidence 47999999999999999999999 478899999999987654321 111222222110 000000 0122333
Q ss_pred CCCCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC-----------CCHHHHHHHHHHhhh
Q 004101 225 VSPRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG-----------CYSSDILAAMDVAIR 293 (773)
Q Consensus 225 ~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----------~~~~~i~~ai~~A~~ 293 (773)
....|..||||||||||||+..+ +..+.||||+|+|+++|++...+ +..+++++||+|+++
T Consensus 72 ~~~~D~~GHGThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~ 143 (455)
T cd07478 72 VPSRDENGHGTHVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYD 143 (455)
T ss_pred CcCCCCCCchHHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHH
Confidence 45678999999999999998532 23458999999999999998765 467899999999887
Q ss_pred C-----CCcEEEeccCCCC-CCCcccHHHHHHHHHHhC-CCEEEEeCCCCCCCCCccccCCCceEEEcCcCCCccceeEE
Q 004101 294 D-----GVDVLSLSLGGFP-LPLFDDSIAIGSFRAMEH-GISVVCAAGNNGPLQSSVANIAPWIATVGASTLDRRFPAIV 366 (773)
Q Consensus 294 ~-----g~dVIn~SlG~~~-~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~ 366 (773)
. .+.|||||||... .....+.++.++..+.++ |++||+||||+|....+..... ... ...-...+
T Consensus 144 ~a~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~----~~~----~~~~~ie~ 215 (455)
T cd07478 144 KALELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGI----VPN----GETKTVEL 215 (455)
T ss_pred HHHHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeee----ccC----CceEEEEE
Confidence 5 3779999999863 344456677676676665 9999999999998655543310 000 00001112
Q ss_pred EeCCCeEEeeeeccCCCCCCCCCceeEEEEecCCCCCC-----CcccCCCCCCCcccceEEEEecCCCch------hhHH
Q 004101 367 RMADGGLLYGESMYPGNQFSKTEKELDLIYVTGGDGGS-----EFCLKGSLPIAEVRGKMVVCDRGVNGR------AEKG 435 (773)
Q Consensus 367 ~~~~g~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~~~~-----~~c~~~~~~~~~~~gkivl~~~g~~~~------~~~~ 435 (773)
..+.++......++.... . .....++.|++..... ..... +.......+|.+..+....+ ....
T Consensus 216 ~v~~~~~~~~~eiW~~~~-d--~~~v~i~sP~Ge~~~~i~~~~~~~~~--~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~ 290 (455)
T cd07478 216 NVGEGEKGFNLEIWGDFP-D--RFSVSIISPSGESSGRINPGIGGSES--YKFVFEGTTVYVYYYLPEPYTGDQLIFIRF 290 (455)
T ss_pred EECCCCcceEEEEecCCC-C--EEEEEEECCCCCccCccCcCCCccee--EEEEECCeEEEEEEcCCCCCCCCeEEEEEc
Confidence 222222211112222111 0 1123333332222111 00000 00000011122111110000 0000
Q ss_pred HHHHHcCceEEEEeccCCCCcccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecce------eecc-cCCCccc
Q 004101 436 QVVKEAGGAAMILANTEINLEEDSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGT------VIGR-SRAPAVA 508 (773)
Q Consensus 436 ~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~------~~~~-~~~~~~a 508 (773)
. ....|-+-+.++..... ......|+|.-.+..++.. ++..... .+++.+.+ +... ...+.++
T Consensus 291 ~-~~~~GiW~i~~~~~~~~---~g~~~~Wlp~~~~~~~~t~----f~~~~~~--~tit~Pa~~~~vitVga~~~~~~~~~ 360 (455)
T cd07478 291 K-NIKPGIWKIRLTGVSIT---DGRFDAWLPSRGLLSENTR----FLEPDPY--TTLTIPGTARSVITVGAYNQNNNSIA 360 (455)
T ss_pred c-CCCccceEEEEEeccCC---CceEEEEecCcCcCCCCCE----eecCCCC--ceEecCCCCCCcEEEEEEeCCCCccc
Confidence 1 11223333333333211 1112356665554443332 2333333 34444432 1112 2345699
Q ss_pred cccCCCCCCCCCCcccCceEeCCCceEeccCCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhC------CC
Q 004101 509 QFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAY------PK 582 (773)
Q Consensus 509 ~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~------P~ 582 (773)
.||||||+. ++++||||+|||++|+++++. +.|..++|||||||||||++|||+|++ |.
T Consensus 361 ~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~ 425 (455)
T cd07478 361 IFSGRGPTR--DGRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPY 425 (455)
T ss_pred CccCCCcCC--CCCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCC
Confidence 999999998 899999999999999999985 589999999999999999999999975 56
Q ss_pred CCHHHHHHHHHhccccCCC
Q 004101 583 WSPAAIKSAIMTTADGNDH 601 (773)
Q Consensus 583 ~s~~~ik~~L~~TA~~~~~ 601 (773)
|++++||++|++||+++..
T Consensus 426 ~~~~~ik~~L~~tA~~~~~ 444 (455)
T cd07478 426 LYGEKIKTYLIRGARRRPG 444 (455)
T ss_pred CCHHHHHHHHHHhCccCCC
Confidence 7999999999999998863
No 6
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=4.8e-46 Score=390.40 Aligned_cols=248 Identities=25% Similarity=0.309 Sum_probs=203.1
Q ss_pred CcccCCCCCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcc
Q 004101 142 AWYESQFGHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNII 221 (773)
Q Consensus 142 ~~~~~~~G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 221 (773)
+|..+.+|+||+|||||+|||++||+|.+....+. ..+..
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~--------------------------~~~~~-------------- 41 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL--------------------------FTYAA-------------- 41 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc--------------------------cCccc--------------
Confidence 79999999999999999999999999985321110 00000
Q ss_pred cccCCCCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC--CCHHHHHHHHHHhhhCCCcEE
Q 004101 222 QEYVSPRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG--CYSSDILAAMDVAIRDGVDVL 299 (773)
Q Consensus 222 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~A~~~g~dVI 299 (773)
......|..+|||||||||+|+.. ..+.||||+|+|+.+|++...+ ++..++++||+||+++|+|||
T Consensus 42 -~~~~~~~~~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VI 110 (267)
T cd07476 42 -AACQDGGASAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHII 110 (267)
T ss_pred -cCCCCCCCCCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEE
Confidence 002355778999999999998742 1247999999999999997754 457889999999999999999
Q ss_pred EeccCCCCC-CCcccHHHHHHHHHHhCCCEEEEeCCCCCCCCCccccCCCceEEEcCcCCCccceeEEEeCCCeEEeeee
Q 004101 300 SLSLGGFPL-PLFDDSIAIGSFRAMEHGISVVCAAGNNGPLQSSVANIAPWIATVGASTLDRRFPAIVRMADGGLLYGES 378 (773)
Q Consensus 300 n~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~ 378 (773)
|||||.... ......+..+..++.++|+++|+||||+|.....++...+++|+|||++.+
T Consensus 111 N~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------- 171 (267)
T cd07476 111 NISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD------------------- 171 (267)
T ss_pred EecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC-------------------
Confidence 999997642 234456777778889999999999999998877888889999999985311
Q ss_pred ccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCccc
Q 004101 379 MYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEED 458 (773)
Q Consensus 379 ~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 458 (773)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCCceEecc
Q 004101 459 SVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAAW 538 (773)
Q Consensus 459 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~ 538 (773)
+.++.||+||+.. .||||+|||.+|+++.
T Consensus 172 ----------------------------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~ 200 (267)
T cd07476 172 ----------------------------------------------GLPLKFSNWGADY-----RKKGILAPGENILGAA 200 (267)
T ss_pred ----------------------------------------------CCeeeecCCCCCC-----CCceEEecCCCceeec
Confidence 1456789999864 3889999999999988
Q ss_pred CCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCC----CCHHHHHHHHHhccccCCCCC
Q 004101 539 PQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPK----WSPAAIKSAIMTTADGNDHFG 603 (773)
Q Consensus 539 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~----~s~~~ik~~L~~TA~~~~~~g 603 (773)
+. +.|..++|||||||||||++|||+|++|. ++|++||++|++||++++..+
T Consensus 201 ~~-------------~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~~ 256 (267)
T cd07476 201 LG-------------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPEA 256 (267)
T ss_pred CC-------------CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCcc
Confidence 76 57999999999999999999999999987 899999999999999987543
No 7
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=2.2e-45 Score=386.45 Aligned_cols=253 Identities=26% Similarity=0.259 Sum_probs=188.5
Q ss_pred CCCCCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcccccC
Q 004101 146 SQFGHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEYV 225 (773)
Q Consensus 146 ~~~G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~ 225 (773)
+++|+||+|||||||||..||++.+...+..+ +...+.... .
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~-----------------------~~~~~~~~~---------------~ 42 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLP-----------------------GNVNVLGDL---------------D 42 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCC-----------------------cceeecccc---------------C
Confidence 57999999999999999999965432111111 111111110 2
Q ss_pred CCCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCCCCHHHHHHHHHHhhhCCCcEEEeccCC
Q 004101 226 SPRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNGCYSSDILAAMDVAIRDGVDVLSLSLGG 305 (773)
Q Consensus 226 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~g~dVIn~SlG~ 305 (773)
...|..+||||||||| .||||+|+|+.+|+. ...+++++||+||++.|++|||||||.
T Consensus 43 ~~~d~~gHGT~vAgii------------------~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~ 100 (275)
T cd05562 43 GGSGGGDEGRAMLEII------------------HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGY 100 (275)
T ss_pred CCCCCCchHHHHHHHH------------------hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccc
Confidence 3567889999999999 399999999999874 347889999999999999999999998
Q ss_pred CCCCC-cccHHHHHHHHHHhC-CCEEEEeCCCCCCCCC-ccccCCCceEEEcCcCCCccceeEEEeCCCeEEeeeeccCC
Q 004101 306 FPLPL-FDDSIAIGSFRAMEH-GISVVCAAGNNGPLQS-SVANIAPWIATVGASTLDRRFPAIVRMADGGLLYGESMYPG 382 (773)
Q Consensus 306 ~~~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~ 382 (773)
..... ....+..++.++.++ |++||+||||+|.... ..+...|++|+|||++.+....
T Consensus 101 ~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~------------------- 161 (275)
T cd05562 101 LNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPA------------------- 161 (275)
T ss_pred cCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcc-------------------
Confidence 65433 234566777788887 9999999999998543 4567789999999976433200
Q ss_pred CCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCccccccc
Q 004101 383 NQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDSVDV 462 (773)
Q Consensus 383 ~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 462 (773)
.+ .|. . .
T Consensus 162 ------------~~---------s~~--------------------------------------------~--~------ 168 (275)
T cd05562 162 ------------FG---------SDP--------------------------------------------A--P------ 168 (275)
T ss_pred ------------cc---------ccc--------------------------------------------c--c------
Confidence 00 000 0 0
Q ss_pred ccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCC-ceEeccCCC
Q 004101 463 HVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGV-NIIAAWPQN 541 (773)
Q Consensus 463 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~-~I~sa~~~~ 541 (773)
.......+.||++||+. ++++||||+|||+ ++.+.+..
T Consensus 169 --------------------------------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~- 207 (275)
T cd05562 169 --------------------------------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG- 207 (275)
T ss_pred --------------------------------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC-
Confidence 00001345678899987 7889999999975 44444433
Q ss_pred CCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCC
Q 004101 542 LGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTADGNDHFG 603 (773)
Q Consensus 542 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g 603 (773)
+.|..++|||||||||||++|||+|++|+|+++|||++|++||+++...+
T Consensus 208 ------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g 257 (275)
T cd05562 208 ------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPG 257 (275)
T ss_pred ------------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCC
Confidence 57999999999999999999999999999999999999999999886544
No 8
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-46 Score=385.31 Aligned_cols=333 Identities=28% Similarity=0.430 Sum_probs=259.6
Q ss_pred CCCCCeEEEEeCCCCCCCccccchHHHHHHHhhhcccC--CCCCC------------cceEEEec---ceeeEEEEEcCH
Q 004101 39 ANTLQTYVVQLHPHGVISSLFTSKLHWHLSFIEQTLSS--EEDPA------------SRLLYSYH---FAMEGFAAQLTR 101 (773)
Q Consensus 39 ~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~------------~~~~~~y~---~~~ngfs~~l~~ 101 (773)
....++|||.|++....+. .+.|.+|++......... ++... ..+.+.|. .+++|+.-.++.
T Consensus 77 ~~~~~~YiV~f~~~~~q~~-~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~ 155 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDASQQK-ISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTG 155 (501)
T ss_pred cccccceEEEeCCCccHHH-HHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccccccc
Confidence 3456999999997776666 777888887765432211 11100 11344443 378899999999
Q ss_pred HHHHHHhCCCCeEEEEeCccccccc-----ccCcccccCCCC---C---CCCcc----cCCCCCccEEEEEccCCCCCCC
Q 004101 102 SELESLQKLPDVIAIRPDRRLQVQT-----TYSYKFLGLSPT---N---GGAWY----ESQFGHGSIIGVLDTGIWPESP 166 (773)
Q Consensus 102 ~~~~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~~---~---~~~~~----~~~~G~gv~VaVIDTGid~~Hp 166 (773)
+-+..++++|-++.++++..++... .+....|||.++ . ...|. .-..|+||...|+||||+.+||
T Consensus 156 ~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~ 235 (501)
T KOG1153|consen 156 ESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHP 235 (501)
T ss_pred ceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEeccccccccc
Confidence 9999999999999999998877654 445556777553 0 11221 2348999999999999999999
Q ss_pred CCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcccccCCCCCCCCCccchhhhhccccc
Q 004101 167 SFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEYVSPRDSTGHGTHTSSTAAGTSV 246 (773)
Q Consensus 167 ~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~ 246 (773)
+|.++ +.| |..+.. .....|++||||||||+|+++.
T Consensus 236 dFegR------a~w------Ga~i~~-------------------------------~~~~~D~nGHGTH~AG~I~sKt- 271 (501)
T KOG1153|consen 236 DFEGR------AIW------GATIPP-------------------------------KDGDEDCNGHGTHVAGLIGSKT- 271 (501)
T ss_pred ccccc------eec------ccccCC-------------------------------CCcccccCCCcceeeeeeeccc-
Confidence 99853 233 221110 0235789999999999999986
Q ss_pred cccccccCCCccccccccCCeEeEEeeecCCC-CCHHHHHHHHHHhhhC---------CCcEEEeccCCCCCCCcccHHH
Q 004101 247 SMASVLGNAGGVARGMAPGAHIAVYKVCWFNG-CYSSDILAAMDVAIRD---------GVDVLSLSLGGFPLPLFDDSIA 316 (773)
Q Consensus 247 ~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~---------g~dVIn~SlG~~~~~~~~~~~~ 316 (773)
.|||.+++|+++||++++| +..+++++++|++++. +..|.|||+|+..+ -++.
T Consensus 272 -------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S----~aLn 334 (501)
T KOG1153|consen 272 -------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRS----AALN 334 (501)
T ss_pred -------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCccc----HHHH
Confidence 7999999999999999999 9999999999999986 47899999999864 3556
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCCC-ccccCCCceEEEcCcCCCccceeEEEeCCCeEEeeeeccCCCCCCCCCceeEEE
Q 004101 317 IGSFRAMEHGISVVCAAGNNGPLQS-SVANIAPWIATVGASTLDRRFPAIVRMADGGLLYGESMYPGNQFSKTEKELDLI 395 (773)
Q Consensus 317 ~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~lv 395 (773)
.|+..|.+.|+.+++||||+..+.+ +.|+.+..+|||||+|..
T Consensus 335 ~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~------------------------------------ 378 (501)
T KOG1153|consen 335 MAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN------------------------------------ 378 (501)
T ss_pred HHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc------------------------------------
Confidence 6677999999999999999987755 566778999999997522
Q ss_pred EecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCcccccccccccEEEEehhhH
Q 004101 396 YVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDSVDVHVLPATLVGFAES 475 (773)
Q Consensus 396 ~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g 475 (773)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCCceEeccCCCCCCCCCCCCCcccc
Q 004101 476 VRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVN 555 (773)
Q Consensus 476 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 555 (773)
+.+|.||+||++. ||.|||++|+|+|.+.. ..
T Consensus 379 -----------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~-----------~a 410 (501)
T KOG1153|consen 379 -----------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN-----------NA 410 (501)
T ss_pred -----------------------------cchhhhcCcccee--------eeecCchhhhhhhhcCc-----------cc
Confidence 1789999999999 99999999999998754 46
Q ss_pred eEEeccccchhhhhHHHHHHHHHhCCC---------CCHHHHHHHHHhccc
Q 004101 556 FTVMSGTSMACPHVSGITALIRSAYPK---------WSPAAIKSAIMTTAD 597 (773)
Q Consensus 556 y~~~sGTSmAaP~VAG~aALl~~~~P~---------~s~~~ik~~L~~TA~ 597 (773)
..++||||||+|||||++|..++++|. .+|.++|..+..-..
T Consensus 411 t~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 411 TAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 789999999999999999999999983 378888887776544
No 9
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=8.3e-45 Score=386.93 Aligned_cols=271 Identities=26% Similarity=0.302 Sum_probs=188.7
Q ss_pred CccEEEEEccCCCCCCCCCCCCCCCC-CCCccccccccCCCCCCCCCCCceeeeeecCCccccc---CCCC-CC----Cc
Q 004101 150 HGSIIGVLDTGIWPESPSFDDHGMPP-VPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVA---STTM-SP----NI 220 (773)
Q Consensus 150 ~gv~VaVIDTGid~~Hp~f~d~g~~~-~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~---~~~~-~~----~~ 220 (773)
++|+|||||||||++||+|++..... .....+|....+.+|.. -+++++|...+... ..++ .. ..
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~d------d~~g~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYID------DVNGWNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccc------cccCeeccCCcccccccccCcccccccccc
Confidence 58999999999999999998641100 00011122222222221 13444454321100 0000 00 00
Q ss_pred ccccCCCCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCCCCHHHHHHHHHHhhhCCCcEEE
Q 004101 221 IQEYVSPRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNGCYSSDILAAMDVAIRDGVDVLS 300 (773)
Q Consensus 221 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~g~dVIn 300 (773)
..+...+.+..+|||||||||||...+. .| +.||||+|+|+.+|++........++++||+||++.|++|||
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~~n~-------~g-~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN 146 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVRDNG-------IG-IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVIN 146 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcCCCC-------Cc-eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEE
Confidence 1122345578999999999999985332 12 479999999999999875557788999999999999999999
Q ss_pred eccCCCCCCCcccHHHHHHHHHHhCCCEEEEeCCCCCCCCCc---cc--------cCCCceEEEcCcCCCccceeEEEeC
Q 004101 301 LSLGGFPLPLFDDSIAIGSFRAMEHGISVVCAAGNNGPLQSS---VA--------NIAPWIATVGASTLDRRFPAIVRMA 369 (773)
Q Consensus 301 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~--------~~~p~vitVgA~~~~~~~~~~~~~~ 369 (773)
||||..... ..+.+..++..+.++|+++|+||||+|..... ++ ...+++|+|||++...
T Consensus 147 ~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~--------- 216 (291)
T cd07483 147 MSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY--------- 216 (291)
T ss_pred eCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC---------
Confidence 999975422 23455666678889999999999999864321 11 1234556666532111
Q ss_pred CCeEEeeeeccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEe
Q 004101 370 DGGLLYGESMYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILA 449 (773)
Q Consensus 370 ~g~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~ 449 (773)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCcccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEe
Q 004101 450 NTEINLEEDSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIA 529 (773)
Q Consensus 450 ~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~A 529 (773)
....++.||++|+. +|||+|
T Consensus 217 -----------------------------------------------------~~~~~~~~Sn~G~~-------~vdi~A 236 (291)
T cd07483 217 -----------------------------------------------------ENNLVANFSNYGKK-------NVDVFA 236 (291)
T ss_pred -----------------------------------------------------CcccccccCCCCCC-------ceEEEe
Confidence 00157889999974 469999
Q ss_pred CCCceEeccCCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004101 530 PGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTAD 597 (773)
Q Consensus 530 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 597 (773)
||.+|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 237 PG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 237 PGERIYSTTPD-------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred CCCCeEeccCc-------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 99999998765 57999999999999999999999999999999999999999984
No 10
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-44 Score=380.02 Aligned_cols=243 Identities=31% Similarity=0.369 Sum_probs=196.3
Q ss_pred ccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcccccCCCCCC
Q 004101 151 GSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEYVSPRDS 230 (773)
Q Consensus 151 gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 230 (773)
||+|||||||||++||+|.... ..++.++.+.++|.+... ....|.
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~--------------------~~~~~~i~~~~~~~~~~~--------------~~~~~~ 46 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH--------------------LFKNLRILGEYDFVDNSN--------------NTNYTD 46 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc--------------------cccCCceeeeecCccCCC--------------CCCCCC
Confidence 7999999999999999995210 013466777777765431 113678
Q ss_pred CCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC---CCHHHHHHHHHHhhhCCCcEEEeccCCCC
Q 004101 231 TGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG---CYSSDILAAMDVAIRDGVDVLSLSLGGFP 307 (773)
Q Consensus 231 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~A~~~g~dVIn~SlG~~~ 307 (773)
.+|||||||||+|+.. +.+.||||+|+|+.+|+..... .....++.|++||.+.|++|||||||...
T Consensus 47 ~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~ 116 (261)
T cd07493 47 DDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTT 116 (261)
T ss_pred CCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCC
Confidence 8999999999998742 2348999999999999976533 34567899999999999999999999864
Q ss_pred CCCc------------ccHHHHHHHHHHhCCCEEEEeCCCCCCC---CCccccCCCceEEEcCcCCCccceeEEEeCCCe
Q 004101 308 LPLF------------DDSIAIGSFRAMEHGISVVCAAGNNGPL---QSSVANIAPWIATVGASTLDRRFPAIVRMADGG 372 (773)
Q Consensus 308 ~~~~------------~~~~~~a~~~a~~~Gi~vV~AAGN~G~~---~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~ 372 (773)
.... ...+..++..+.++|+++|+||||+|.. ...++...+++|+|||.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~-------------- 182 (261)
T cd07493 117 FDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA-------------- 182 (261)
T ss_pred CCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc--------------
Confidence 2211 2356667778899999999999999987 3456777899999997431
Q ss_pred EEeeeeccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccC
Q 004101 373 LLYGESMYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTE 452 (773)
Q Consensus 373 ~~~g~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~ 452 (773)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCC
Q 004101 453 INLEEDSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGV 532 (773)
Q Consensus 453 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~ 532 (773)
.+.++.||++||+. ++++||||+|||.
T Consensus 183 ---------------------------------------------------~~~~~~~S~~G~~~--~~~~~pdi~a~G~ 209 (261)
T cd07493 183 ---------------------------------------------------NGNKASFSSIGPTA--DGRLKPDVMALGT 209 (261)
T ss_pred ---------------------------------------------------CCCCCccCCcCCCC--CCCcCCceEecCC
Confidence 11567899999987 7899999999999
Q ss_pred ceEeccCCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004101 533 NIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTAD 597 (773)
Q Consensus 533 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 597 (773)
++++.... +.|..++|||||||+|||++|||++++|+|++.|||++|++||+
T Consensus 210 ~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 210 GIYVINGD-------------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred CeEEEcCC-------------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99985443 57899999999999999999999999999999999999999985
No 11
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=2.2e-44 Score=379.44 Aligned_cols=247 Identities=34% Similarity=0.415 Sum_probs=193.8
Q ss_pred CCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcccccCCCC
Q 004101 149 GHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEYVSPR 228 (773)
Q Consensus 149 G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (773)
|+||+|||||||||++||+|.+. |.+... ..+...+++.+.. .....+.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~-----------~~~~~~~~~~d~~------------~~~~~~~ 49 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGG-----------GSADHDYNWFDPV------------GNTPLPY 49 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCC-----------CCcccccccccCC------------CCCCCCC
Confidence 89999999999999999999853 111000 0000001111110 0113456
Q ss_pred CCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCCCCHHHHHHHHHHhhh------------CCC
Q 004101 229 DSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNGCYSSDILAAMDVAIR------------DGV 296 (773)
Q Consensus 229 d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~------------~g~ 296 (773)
|..+|||||||||+|.... +...||||+|+|+.+|+++..++...+++++++++++ .|+
T Consensus 50 d~~~HGT~vagii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (264)
T cd07481 50 DDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAP 120 (264)
T ss_pred CCCCchhhhhhheeecCCC---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCC
Confidence 7889999999999987422 1127999999999999999877888899999999875 789
Q ss_pred cEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEeCCCCCCCCC---ccccCCCceEEEcCcCCCccceeEEEeCCCeE
Q 004101 297 DVLSLSLGGFPLPLFDDSIAIGSFRAMEHGISVVCAAGNNGPLQS---SVANIAPWIATVGASTLDRRFPAIVRMADGGL 373 (773)
Q Consensus 297 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~ 373 (773)
+|||||||.... ....+..++..+.++|++||+||||++.... ..+...+++|+|||++.+
T Consensus 121 ~Iin~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~-------------- 184 (264)
T cd07481 121 DVINNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN-------------- 184 (264)
T ss_pred eEEEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC--------------
Confidence 999999998753 2344455556778899999999999986543 256678889999975311
Q ss_pred EeeeeccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCC
Q 004101 374 LYGESMYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEI 453 (773)
Q Consensus 374 ~~g~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~ 453 (773)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCCc
Q 004101 454 NLEEDSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVN 533 (773)
Q Consensus 454 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~ 533 (773)
+.++.||++||.. .+++||||+|||.+
T Consensus 185 ---------------------------------------------------~~~~~~S~~g~~~--~~~~~~dv~ApG~~ 211 (264)
T cd07481 185 ---------------------------------------------------DVLADFSSRGPST--YGRIKPDISAPGVN 211 (264)
T ss_pred ---------------------------------------------------CCCccccCCCCCC--CCCcCceEEECCCC
Confidence 2677899999998 68999999999999
Q ss_pred eEeccCCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCC--CCHHHHHHHHHhccc
Q 004101 534 IIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPK--WSPAAIKSAIMTTAD 597 (773)
Q Consensus 534 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~--~s~~~ik~~L~~TA~ 597 (773)
|+++++. +.|..++|||||||+|||++|||+|++|+ +++.|||++|++||+
T Consensus 212 i~s~~~~-------------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 212 IRSAVPG-------------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred eEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 9999876 57899999999999999999999999999 999999999999985
No 12
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=4.6e-44 Score=392.20 Aligned_cols=284 Identities=30% Similarity=0.423 Sum_probs=213.9
Q ss_pred CCcccCC-CCCccEEEEEccCCCCCCCCCCCCCCCCCCC-----ccccccccCCCCCCCCCCCceeeeeecCCcccccCC
Q 004101 141 GAWYESQ-FGHGSIIGVLDTGIWPESPSFDDHGMPPVPK-----KWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVAST 214 (773)
Q Consensus 141 ~~~~~~~-~G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~-----~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~ 214 (773)
.+|+.+. +|+||+|+|||||||++||+|.+....+... .+...+..+.+ ..++.+++..++|.++....
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-- 75 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYG---KYYNEKVPFAYNYADNNDDI-- 75 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCC---cccccCCCeeEcCCCCCCcc--
Confidence 3788887 9999999999999999999998654443211 22222222221 12567888888887664211
Q ss_pred CCCCCcccccCCCCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecC--CC-CCHHHHHHHHHHh
Q 004101 215 TMSPNIIQEYVSPRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWF--NG-CYSSDILAAMDVA 291 (773)
Q Consensus 215 ~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~g-~~~~~i~~ai~~A 291 (773)
....|..+|||||||||+|...+.. ....+.||||+|+|+.+|+++. .+ .....+++|++++
T Consensus 76 ----------~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a 140 (346)
T cd07475 76 ----------LDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDA 140 (346)
T ss_pred ----------CCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHH
Confidence 1145789999999999999864321 1234589999999999999974 33 7788899999999
Q ss_pred hhCCCcEEEeccCCCCCC-CcccHHHHHHHHHHhCCCEEEEeCCCCCCCCCcc----------------ccCCCceEEEc
Q 004101 292 IRDGVDVLSLSLGGFPLP-LFDDSIAIGSFRAMEHGISVVCAAGNNGPLQSSV----------------ANIAPWIATVG 354 (773)
Q Consensus 292 ~~~g~dVIn~SlG~~~~~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~----------------~~~~p~vitVg 354 (773)
++.|++|||||||..... .....+..+..++.++|++||+||||+|...... +...+++|+||
T Consensus 141 ~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vg 220 (346)
T cd07475 141 VKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVA 220 (346)
T ss_pred HHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEe
Confidence 999999999999987522 4455667777788999999999999998654321 12234455555
Q ss_pred CcCCCccceeEEEeCCCeEEeeeeccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhH
Q 004101 355 ASTLDRRFPAIVRMADGGLLYGESMYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEK 434 (773)
Q Consensus 355 A~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~ 434 (773)
+++..
T Consensus 221 a~~~~--------------------------------------------------------------------------- 225 (346)
T cd07475 221 SANKK--------------------------------------------------------------------------- 225 (346)
T ss_pred ecccc---------------------------------------------------------------------------
Confidence 43200
Q ss_pred HHHHHHcCceEEEEeccCCCCcccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCC
Q 004101 435 GQVVKEAGGAAMILANTEINLEEDSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARG 514 (773)
Q Consensus 435 ~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~G 514 (773)
......+.++.||+||
T Consensus 226 ----------------------------------------------------------------~~~~~~~~~~~~S~~G 241 (346)
T cd07475 226 ----------------------------------------------------------------VPNPNGGQMSGFSSWG 241 (346)
T ss_pred ----------------------------------------------------------------cCCCCCCccCCCcCCC
Confidence 0001223788999999
Q ss_pred CCCCCCCcccCceEeCCCceEeccCCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHh----CCCCCHHH---
Q 004101 515 PSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSA----YPKWSPAA--- 587 (773)
Q Consensus 515 P~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~~s~~~--- 587 (773)
|+. ..++||||+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+
T Consensus 242 ~~~--~~~~~pdi~apG~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~ 306 (346)
T cd07475 242 PTP--DLDLKPDITAPGGNIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVD 306 (346)
T ss_pred CCc--ccCcCCeEEeCCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 998 789999999999999998765 57899999999999999999999998 79999877
Q ss_pred -HHHHHHhcccc
Q 004101 588 -IKSAIMTTADG 598 (773)
Q Consensus 588 -ik~~L~~TA~~ 598 (773)
||++|++||.+
T Consensus 307 ~ik~~l~~ta~~ 318 (346)
T cd07475 307 LVKNLLMNTATP 318 (346)
T ss_pred HHHHHHHhcCCc
Confidence 78899999985
No 13
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-44 Score=373.79 Aligned_cols=228 Identities=29% Similarity=0.414 Sum_probs=186.1
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcccccCCCCCCC
Q 004101 152 SIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEYVSPRDST 231 (773)
Q Consensus 152 v~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 231 (773)
|+|||||||||.+||+|.+.. +..+++.. ....|..
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~-----------------~~~~~~~ 36 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG-----------------PGAPAPS 36 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC-----------------CCCCCCC
Confidence 789999999999999997321 11111110 1245678
Q ss_pred CCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC----CCHHHHHHHHHHhhhCCCcEEEeccCCCC
Q 004101 232 GHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG----CYSSDILAAMDVAIRDGVDVLSLSLGGFP 307 (773)
Q Consensus 232 gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g----~~~~~i~~ai~~A~~~g~dVIn~SlG~~~ 307 (773)
+|||||||||+|..... .|+||+|+|+.+|++...+ ++..++++||+||++.|++|||||||+..
T Consensus 37 ~HGT~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~ 105 (239)
T cd05561 37 AHGTAVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP 105 (239)
T ss_pred CCHHHHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC
Confidence 99999999999975211 5999999999999998642 67788999999999999999999999754
Q ss_pred CCCcccHHHHHHHHHHhCCCEEEEeCCCCCCCC-CccccCCCceEEEcCcCCCccceeEEEeCCCeEEeeeeccCCCCCC
Q 004101 308 LPLFDDSIAIGSFRAMEHGISVVCAAGNNGPLQ-SSVANIAPWIATVGASTLDRRFPAIVRMADGGLLYGESMYPGNQFS 386 (773)
Q Consensus 308 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 386 (773)
. ..+..++.++.++|+++|+||||+|... ..++...+++|+|++++.+
T Consensus 106 ~----~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~--------------------------- 154 (239)
T cd05561 106 N----ALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR--------------------------- 154 (239)
T ss_pred C----HHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC---------------------------
Confidence 2 4556666788999999999999999753 4567778889999974311
Q ss_pred CCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCccccccccccc
Q 004101 387 KTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDSVDVHVLP 466 (773)
Q Consensus 387 ~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p 466 (773)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCCceEeccCCCCCCCC
Q 004101 467 ATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSS 546 (773)
Q Consensus 467 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~ 546 (773)
+.++.||++|+.. ||+|||.+|+++.+.
T Consensus 155 --------------------------------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~------ 182 (239)
T cd05561 155 --------------------------------------GRLYREANRGAHV--------DFAAPGVDVWVAAPG------ 182 (239)
T ss_pred --------------------------------------CCccccCCCCCcc--------eEEccccceecccCC------
Confidence 1567899999876 999999999997654
Q ss_pred CCCCCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCc
Q 004101 547 LPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTADGNDHFGKP 605 (773)
Q Consensus 547 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~ 605 (773)
+.|..++|||||||||||++|||+|++| ++++|||++|++||++++..+.+
T Consensus 183 -------~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~~~d 233 (239)
T cd05561 183 -------GGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPPGRD 233 (239)
T ss_pred -------CCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCCCcC
Confidence 5799999999999999999999999999 99999999999999988766543
No 14
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=5.5e-44 Score=387.97 Aligned_cols=220 Identities=29% Similarity=0.319 Sum_probs=165.5
Q ss_pred CCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC---CCHHHHHHHHHHhhhCCCcEEEeccC
Q 004101 228 RDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG---CYSSDILAAMDVAIRDGVDVLSLSLG 304 (773)
Q Consensus 228 ~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~A~~~g~dVIn~SlG 304 (773)
.|+.+|||||||||||+..+ ...+.||||+|+|+++|+++... +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 47789999999999998422 23347999999999999987532 23457999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHH-HHhCCCEEEEeCCCCCCCCCccc--c-CCCceEEEcCcCCCccceeEEEeCCCeEEeeeecc
Q 004101 305 GFPLPLFDDSIAIGSFR-AMEHGISVVCAAGNNGPLQSSVA--N-IAPWIATVGASTLDRRFPAIVRMADGGLLYGESMY 380 (773)
Q Consensus 305 ~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~--~-~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~ 380 (773)
..........+..++.+ +.++|+++|+||||+|+...++. . .++++|+|||........
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~----------------- 316 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMA----------------- 316 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccc-----------------
Confidence 87432112223333333 45799999999999998766543 2 468999999853211000
Q ss_pred CCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCccccc
Q 004101 381 PGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDSV 460 (773)
Q Consensus 381 ~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 460 (773)
..|.+.
T Consensus 317 ---------~~y~~~----------------------------------------------------------------- 322 (412)
T cd04857 317 ---------AEYSLR----------------------------------------------------------------- 322 (412)
T ss_pred ---------cccccc-----------------------------------------------------------------
Confidence 000000
Q ss_pred ccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCCceEeccCC
Q 004101 461 DVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQ 540 (773)
Q Consensus 461 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~ 540 (773)
....+.++.||||||+. ++.+||||+|||+.|.+.-..
T Consensus 323 ----------------------------------------~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~ 360 (412)
T cd04857 323 ----------------------------------------EKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNW 360 (412)
T ss_pred ----------------------------------------cccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccC
Confidence 01123688999999998 899999999999999885222
Q ss_pred CCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHH----hCCCCCHHHHHHHHHhccccC
Q 004101 541 NLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRS----AYPKWSPAAIKSAIMTTADGN 599 (773)
Q Consensus 541 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~s~~~ik~~L~~TA~~~ 599 (773)
.. ..|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 361 ~~-----------~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 361 TL-----------QGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CC-----------CCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 11 5789999999999999999999985 478999999999999999864
No 15
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=1.5e-43 Score=374.90 Aligned_cols=263 Identities=30% Similarity=0.386 Sum_probs=201.0
Q ss_pred CCcccCCCCCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCc
Q 004101 141 GAWYESQFGHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNI 220 (773)
Q Consensus 141 ~~~~~~~~G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 220 (773)
.+|..+++|+||+|+|||||||++||+|.+..... .+ ..+...+... .+.
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-------------~~------------~~~~~~~~~~-----~~~ 50 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-------------GY------------DPAVNGYNFV-----PNV 50 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-------------Cc------------ccccCCcccc-----ccc
Confidence 37999999999999999999999999998641100 00 0000010000 000
Q ss_pred ccccCCCCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC-CCHHHHHHHHHHhhhCCCcEE
Q 004101 221 IQEYVSPRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG-CYSSDILAAMDVAIRDGVDVL 299 (773)
Q Consensus 221 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVI 299 (773)
........|..||||||||||+|...+.....|.+ .+.|+||+|+|+.+|++...+ ....+++++|+||++.|++||
T Consensus 51 ~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vi 128 (273)
T cd07485 51 GDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVIL 128 (273)
T ss_pred CCcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEE
Confidence 00113356788999999999999764332222221 336799999999999999865 778889999999999999999
Q ss_pred EeccCCCCCCCcccHHHHHHHHHHhC-------CCEEEEeCCCCCCCCCccccCCCceEEEcCcCCCccceeEEEeCCCe
Q 004101 300 SLSLGGFPLPLFDDSIAIGSFRAMEH-------GISVVCAAGNNGPLQSSVANIAPWIATVGASTLDRRFPAIVRMADGG 372 (773)
Q Consensus 300 n~SlG~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~ 372 (773)
|||||......+...+..+...+.++ |+++|+||||++......+...+++|+||+++.+
T Consensus 129 n~S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~------------- 195 (273)
T cd07485 129 QNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN------------- 195 (273)
T ss_pred EecCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC-------------
Confidence 99999875334455566666677777 9999999999998877778888999999975311
Q ss_pred EEeeeeccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccC
Q 004101 373 LLYGESMYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTE 452 (773)
Q Consensus 373 ~~~g~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~ 452 (773)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCC
Q 004101 453 INLEEDSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGV 532 (773)
Q Consensus 453 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~ 532 (773)
+.++.||++|+.. ||+|||.
T Consensus 196 ----------------------------------------------------~~~~~~S~~g~~~--------~i~apG~ 215 (273)
T cd07485 196 ----------------------------------------------------DNKASFSNYGRWV--------DIAAPGV 215 (273)
T ss_pred ----------------------------------------------------CCcCccccCCCce--------EEEeCCC
Confidence 1567899999976 9999999
Q ss_pred -ceEeccCCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCC-CCHHHHHHHHHhc
Q 004101 533 -NIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPK-WSPAAIKSAIMTT 595 (773)
Q Consensus 533 -~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~-~s~~~ik~~L~~T 595 (773)
.|+++++.... .....|..++|||||||+|||++|||+|++|+ +++.|||++|++|
T Consensus 216 ~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 216 GTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 89988765321 11257999999999999999999999999999 9999999999986
No 16
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.9e-43 Score=378.22 Aligned_cols=265 Identities=32% Similarity=0.399 Sum_probs=208.3
Q ss_pred CCCcccCCCCCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCC
Q 004101 140 GGAWYESQFGHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPN 219 (773)
Q Consensus 140 ~~~~~~~~~G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 219 (773)
+.+|+.+++|+||+|||||+|||++||+|.+.-. .+.++.+.+++...... . .+
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~---------------------~~~~~~~~~d~~~~~~~-~----~~ 56 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFG---------------------PGCKVAGGYDFVGDDYD-G----TN 56 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCC---------------------CCceeccccccCCcccc-c----cc
Confidence 4689999999999999999999999999985311 11223333334322100 0 01
Q ss_pred cccccCCCCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC-CCHHHHHHHHHHhhhCCCcE
Q 004101 220 IIQEYVSPRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG-CYSSDILAAMDVAIRDGVDV 298 (773)
Q Consensus 220 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dV 298 (773)
...+...+.|..+|||||||||+|...+ ..+.||||+|+|+.+|+++..+ .....++++|++|++++++|
T Consensus 57 ~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~i 127 (312)
T cd07489 57 PPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADV 127 (312)
T ss_pred CCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCE
Confidence 1222345677899999999999998532 2238999999999999998766 66777899999999999999
Q ss_pred EEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEeCCCCCCCCC---ccccCCCceEEEcCcCCCccceeEEEeCCCeEEe
Q 004101 299 LSLSLGGFPLPLFDDSIAIGSFRAMEHGISVVCAAGNNGPLQS---SVANIAPWIATVGASTLDRRFPAIVRMADGGLLY 375 (773)
Q Consensus 299 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~ 375 (773)
||||||.... ...+.+...+.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 128 In~S~g~~~~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------------ 188 (312)
T cd07489 128 ITASLGGPSG-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------------ 188 (312)
T ss_pred EEeCCCcCCC-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec------------------
Confidence 9999998752 23366667777888999999999999987532 3345567778777521
Q ss_pred eeeccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCC
Q 004101 376 GESMYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINL 455 (773)
Q Consensus 376 g~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 455 (773)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCCceE
Q 004101 456 EEDSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNII 535 (773)
Q Consensus 456 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~ 535 (773)
+.||++||+. +...||||+|||++++
T Consensus 189 ----------------------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~ 214 (312)
T cd07489 189 ----------------------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNIL 214 (312)
T ss_pred ----------------------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEE
Confidence 4589999998 6889999999999999
Q ss_pred eccCCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhC-CCCCHHHHHHHHHhccccCCCCC
Q 004101 536 AAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAY-PKWSPAAIKSAIMTTADGNDHFG 603 (773)
Q Consensus 536 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-P~~s~~~ik~~L~~TA~~~~~~g 603 (773)
++++... +.|..++|||||||+|||++|||++++ |.+++.+||++|++||.++...+
T Consensus 215 ~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~ 272 (312)
T cd07489 215 STYPLAG-----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSD 272 (312)
T ss_pred EeeeCCC-----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccC
Confidence 9887642 469999999999999999999999999 99999999999999999876543
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.4e-43 Score=369.28 Aligned_cols=256 Identities=36% Similarity=0.532 Sum_probs=203.2
Q ss_pred CCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcccccCCCC
Q 004101 149 GHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEYVSPR 228 (773)
Q Consensus 149 G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (773)
|+||+|+|||+|||++||+|.+.... .+.+... ........
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~---------------------------~~~~~~~------------~~~~~~~~ 41 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR---------------------------FADFVNT------------VNGRTTPY 41 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc---------------------------ccccccc------------ccCCCCCC
Confidence 89999999999999999999853211 0011100 00113466
Q ss_pred CCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC-CCHHHHHHHHHHhhhC----CCcEEEecc
Q 004101 229 DSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG-CYSSDILAAMDVAIRD----GVDVLSLSL 303 (773)
Q Consensus 229 d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~----g~dVIn~Sl 303 (773)
|..+|||||||+|+|..... .+.+.|+||+|+|+.+|+++..+ ...+++++||+|+++. +++||||||
T Consensus 42 d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~ 114 (264)
T cd07487 42 DDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSL 114 (264)
T ss_pred CCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEecc
Confidence 77899999999999985331 23348999999999999999877 6788999999999998 999999999
Q ss_pred CCCCC-CCcccHHHHHHHHHHhCCCEEEEeCCCCCCCCC--ccccCCCceEEEcCcCCCccceeEEEeCCCeEEeeeecc
Q 004101 304 GGFPL-PLFDDSIAIGSFRAMEHGISVVCAAGNNGPLQS--SVANIAPWIATVGASTLDRRFPAIVRMADGGLLYGESMY 380 (773)
Q Consensus 304 G~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~ 380 (773)
|.... ....+.+..++.++.++|++||+||||++.... ..+...+++|+|||++.+..
T Consensus 115 g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------- 175 (264)
T cd07487 115 GAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------------- 175 (264)
T ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC-------------------
Confidence 98753 445677778888999999999999999998765 55667899999998653221
Q ss_pred CCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCccccc
Q 004101 381 PGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDSV 460 (773)
Q Consensus 381 ~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 460 (773)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCCceEeccCC
Q 004101 461 DVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQ 540 (773)
Q Consensus 461 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~ 540 (773)
....++.||++||+. ++++||||+|||.+|+++.+.
T Consensus 176 ------------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~ 211 (264)
T cd07487 176 ------------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSP 211 (264)
T ss_pred ------------------------------------------CCccccccccCCCCC--CCCcCCCEEccccceEecccc
Confidence 001578899999998 899999999999999998654
Q ss_pred CCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004101 541 NLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTAD 597 (773)
Q Consensus 541 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 597 (773)
... ........|..++|||||||+|||++|||+|++|++++.+||++|++||+
T Consensus 212 ~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 212 GGN----PGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ccc----cCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 210 01122268899999999999999999999999999999999999999985
No 18
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=6.2e-43 Score=366.73 Aligned_cols=232 Identities=36% Similarity=0.506 Sum_probs=194.0
Q ss_pred CcccCCCCCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcc
Q 004101 142 AWYESQFGHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNII 221 (773)
Q Consensus 142 ~~~~~~~G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 221 (773)
.|..+++|+||+|||||+||+++||+|.+. +...+++...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------------
Confidence 677889999999999999999999999732 1222222221
Q ss_pred cccCCCCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC-CCHHHHHHHHHHhhhC-----C
Q 004101 222 QEYVSPRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG-CYSSDILAAMDVAIRD-----G 295 (773)
Q Consensus 222 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~-----g 295 (773)
....|..+|||||||||++.. .||||+|+|+.+|+++..+ ...++++++++|+++. +
T Consensus 57 ---~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~ 119 (255)
T cd04077 57 ---DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGK 119 (255)
T ss_pred ---CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCC
Confidence 125678899999999999864 6999999999999999876 7778899999999987 4
Q ss_pred CcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEeCCCCCCCC-CccccCCCceEEEcCcCCCccceeEEEeCCCeEE
Q 004101 296 VDVLSLSLGGFPLPLFDDSIAIGSFRAMEHGISVVCAAGNNGPLQ-SSVANIAPWIATVGASTLDRRFPAIVRMADGGLL 374 (773)
Q Consensus 296 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 374 (773)
++|||||||... ...+..++.++.++|+++|+||||+|... ...+...+++|+|||.+.+.
T Consensus 120 ~~iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~~-------------- 181 (255)
T cd04077 120 PAVANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSDD-------------- 181 (255)
T ss_pred CeEEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCCC--------------
Confidence 899999999875 34555666688899999999999999765 45677789999999854211
Q ss_pred eeeeccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCC
Q 004101 375 YGESMYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEIN 454 (773)
Q Consensus 375 ~g~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 454 (773)
T Consensus 182 -------------------------------------------------------------------------------- 181 (255)
T cd04077 182 -------------------------------------------------------------------------------- 181 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCCce
Q 004101 455 LEEDSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNI 534 (773)
Q Consensus 455 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I 534 (773)
.++.||++||.. ||+|||.+|
T Consensus 182 ---------------------------------------------------~~~~~S~~g~~~--------~i~apG~~i 202 (255)
T cd04077 182 ---------------------------------------------------ARASFSNYGSCV--------DIFAPGVDI 202 (255)
T ss_pred ---------------------------------------------------CccCcccCCCCC--------cEEeCCCCe
Confidence 467899999987 999999999
Q ss_pred EeccCCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 004101 535 IAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTADG 598 (773)
Q Consensus 535 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~ 598 (773)
.++..... ..|..++|||||||+|||++|||++++|++++++||++|++||++
T Consensus 203 ~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 203 LSAWIGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred EecccCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 99876422 589999999999999999999999999999999999999999974
No 19
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=1.1e-42 Score=365.93 Aligned_cols=241 Identities=34% Similarity=0.441 Sum_probs=201.0
Q ss_pred CCCCcccCCCCCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCC
Q 004101 139 NGGAWYESQFGHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSP 218 (773)
Q Consensus 139 ~~~~~~~~~~G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 218 (773)
...+|..+ +|+||+|+|||+|||++||+|.. .++...+++.++.
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~--------------------------~~~~~~~~~~~~~--------- 61 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLK--------------------------VKFVLGYDFVDND--------- 61 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCccccc--------------------------CCcccceeccCCC---------
Confidence 56689988 99999999999999999999842 2222333333221
Q ss_pred CcccccCCCCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC-CCHHHHHHHHHHhhhCCCc
Q 004101 219 NIIQEYVSPRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG-CYSSDILAAMDVAIRDGVD 297 (773)
Q Consensus 219 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~g~d 297 (773)
..+.|..+|||||||||++..... ..+.|+||+|+|+.+|+++..+ +...+++++|+++++.|++
T Consensus 62 ------~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~ 127 (260)
T cd07484 62 ------SDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAK 127 (260)
T ss_pred ------CCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCe
Confidence 235678899999999999874322 2247999999999999998866 7788999999999999999
Q ss_pred EEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEeCCCCCCCCCccccCCCceEEEcCcCCCccceeEEEeCCCeEEeee
Q 004101 298 VLSLSLGGFPLPLFDDSIAIGSFRAMEHGISVVCAAGNNGPLQSSVANIAPWIATVGASTLDRRFPAIVRMADGGLLYGE 377 (773)
Q Consensus 298 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~ 377 (773)
|||||||... ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 128 iin~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------ 186 (260)
T cd07484 128 VINLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------------------ 186 (260)
T ss_pred EEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC------------------
Confidence 9999999874 3345666667888999999999999999888889999999999975311
Q ss_pred eccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCcc
Q 004101 378 SMYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEE 457 (773)
Q Consensus 378 ~~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 457 (773)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCCceEec
Q 004101 458 DSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAA 537 (773)
Q Consensus 458 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa 537 (773)
+..+.||++|+.. |++|||.+|.++
T Consensus 187 -----------------------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~ 211 (260)
T cd07484 187 -----------------------------------------------DKRASFSNYGKWV--------DVSAPGGGILST 211 (260)
T ss_pred -----------------------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEee
Confidence 1566789999876 999999999988
Q ss_pred cCCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHHHhccccC
Q 004101 538 WPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTADGN 599 (773)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~ 599 (773)
.+. +.|..++|||||||+|||++||+++++| |++.+||++|++||+++
T Consensus 212 ~~~-------------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 212 TPD-------------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred cCC-------------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 765 5789999999999999999999999999 99999999999999876
No 20
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.3e-42 Score=367.10 Aligned_cols=272 Identities=39% Similarity=0.534 Sum_probs=204.2
Q ss_pred CCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcccccCCCC
Q 004101 149 GHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEYVSPR 228 (773)
Q Consensus 149 G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (773)
|+||+|||||+|||++||+|.+.. .++.++...++|.......................
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999997431 13455556666644321100000000000112355
Q ss_pred CCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC-CCHHHHHHHHHHhhhCCCcEEEeccCCCC
Q 004101 229 DSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG-CYSSDILAAMDVAIRDGVDVLSLSLGGFP 307 (773)
Q Consensus 229 d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVIn~SlG~~~ 307 (773)
|..+|||||||+|+|...+ ...+.|+||+|+|+.+|+++..+ +...++++||+|+++++++|||||||...
T Consensus 60 ~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~ 131 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV 131 (295)
T ss_pred CCCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 6899999999999988533 22347999999999999998555 78889999999999999999999999764
Q ss_pred CCCcccHHHHHHHHHHhCCCEEEEeCCCCCCCCCcc--ccCCCceEEEcCcCCCccceeEEEeCCCeEEeeeeccCCCCC
Q 004101 308 LPLFDDSIAIGSFRAMEHGISVVCAAGNNGPLQSSV--ANIAPWIATVGASTLDRRFPAIVRMADGGLLYGESMYPGNQF 385 (773)
Q Consensus 308 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 385 (773)
.. ..+.+..++.++.++|+++|+||||+|...... +...+++|+|||+.....
T Consensus 132 ~~-~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~------------------------ 186 (295)
T cd07474 132 NG-PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV------------------------ 186 (295)
T ss_pred CC-CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc------------------------
Confidence 32 345666777788999999999999998765443 556889999998541100
Q ss_pred CCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCcccccccccc
Q 004101 386 SKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDSVDVHVL 465 (773)
Q Consensus 386 ~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~ 465 (773)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccC-CCCCCCCCCcccCceEeCCCceEeccCCCCCC
Q 004101 466 PATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSA-RGPSLYTPTILKPDVIAPGVNIIAAWPQNLGP 544 (773)
Q Consensus 466 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs-~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 544 (773)
........|++ .|++. ...+||||+|||++|++++....
T Consensus 187 ------------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~~-- 226 (295)
T cd07474 187 ------------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGSG-- 226 (295)
T ss_pred ------------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCCC--
Confidence 00012334444 45554 78899999999999999987631
Q ss_pred CCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCC
Q 004101 545 SSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTADGNDHFG 603 (773)
Q Consensus 545 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g 603 (773)
..|..++|||||||+|||++|||+|++|+|++++||++|++||++....+
T Consensus 227 ---------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~ 276 (295)
T cd07474 227 ---------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSD 276 (295)
T ss_pred ---------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCC
Confidence 57899999999999999999999999999999999999999999887654
No 21
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.3e-43 Score=372.28 Aligned_cols=230 Identities=26% Similarity=0.259 Sum_probs=167.1
Q ss_pred CCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC-----CCHHHHHHHHHHhhhCC---CcE
Q 004101 227 PRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG-----CYSSDILAAMDVAIRDG---VDV 298 (773)
Q Consensus 227 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----~~~~~i~~ai~~A~~~g---~dV 298 (773)
..|..||||||||||++.... .....|+||+++|+.+|++...| ....++++||+|+++.+ ++|
T Consensus 34 ~~d~~gHGT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~V 105 (291)
T cd04847 34 TADDLGHGTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRV 105 (291)
T ss_pred cCCCCCChHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeE
Confidence 568899999999999976422 12337999999999999999863 55678999999999853 599
Q ss_pred EEeccCCCCCCCc--ccHHHHHHH-HHHhCCCEEEEeCCCCCCCCCc------------cccCCCceEEEcCcCCCccce
Q 004101 299 LSLSLGGFPLPLF--DDSIAIGSF-RAMEHGISVVCAAGNNGPLQSS------------VANIAPWIATVGASTLDRRFP 363 (773)
Q Consensus 299 In~SlG~~~~~~~--~~~~~~a~~-~a~~~Gi~vV~AAGN~G~~~~~------------~~~~~p~vitVgA~~~~~~~~ 363 (773)
||||||....... ...+..++. .+.++|++||+||||++..... .+..++++|+|||.+.+....
T Consensus 106 iN~SlG~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~ 185 (291)
T cd04847 106 FNLSLGSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDIT 185 (291)
T ss_pred EEEecCCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCC
Confidence 9999998742211 123333332 3458999999999999987543 245578999999976443210
Q ss_pred eEEEeCCCeEEeeeeccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCc
Q 004101 364 AIVRMADGGLLYGESMYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGG 443 (773)
Q Consensus 364 ~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga 443 (773)
.. .. +
T Consensus 186 ~~---------------------------s~-~----------------------------------------------- 190 (291)
T cd04847 186 DR---------------------------AR-Y----------------------------------------------- 190 (291)
T ss_pred Cc---------------------------cc-c-----------------------------------------------
Confidence 00 00 0
Q ss_pred eEEEEeccCCCCcccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcc
Q 004101 444 AAMILANTEINLEEDSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTIL 523 (773)
Q Consensus 444 ~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~ 523 (773)
+.......+.||+|||.. ++.+
T Consensus 191 --------------------------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~ 212 (291)
T cd04847 191 --------------------------------------------------------SAVGPAPAGATTSSGPGS--PGPI 212 (291)
T ss_pred --------------------------------------------------------cccccccCCCccccCCCC--CCCc
Confidence 000001234499999998 8999
Q ss_pred cCceEeCCCceEeccCCCCCC-----CCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004101 524 KPDVIAPGVNIIAAWPQNLGP-----SSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTAD 597 (773)
Q Consensus 524 KPDI~APG~~I~sa~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 597 (773)
||||+|||++|.+..+..... ...........|..++|||||||||||++|||++++|+++|++||++|++||+
T Consensus 213 KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 213 KPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 999999999998865421100 00001122368999999999999999999999999999999999999999985
No 22
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.3e-42 Score=365.38 Aligned_cols=208 Identities=31% Similarity=0.377 Sum_probs=167.8
Q ss_pred CCCCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCCCCHHHHHHHHHHhh----------hC
Q 004101 225 VSPRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNGCYSSDILAAMDVAI----------RD 294 (773)
Q Consensus 225 ~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~----------~~ 294 (773)
....+..+|||||||||+|...+. ..+.||||+|+|+.+|+++..+.+.+++++|++|++ .+
T Consensus 65 ~~~~~~~~HGT~vAgiiaa~~~~~--------~~~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~ 136 (285)
T cd07496 65 SGVSPSSWHGTHVAGTIAAVTNNG--------VGVAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPN 136 (285)
T ss_pred CCCCCCCCCHHHHHHHHhCcCCCC--------CCceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCC
Confidence 345678899999999999986322 223799999999999999887778899999999998 45
Q ss_pred CCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEeCCCCCCCC-CccccCCCceEEEcCcCCCccceeEEEeCCCeE
Q 004101 295 GVDVLSLSLGGFPLPLFDDSIAIGSFRAMEHGISVVCAAGNNGPLQ-SSVANIAPWIATVGASTLDRRFPAIVRMADGGL 373 (773)
Q Consensus 295 g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~ 373 (773)
+++|||||||..... ...+..++..+.++|++||+||||++... ..++...+++|+|||++.+
T Consensus 137 ~~~Iin~S~G~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~-------------- 200 (285)
T cd07496 137 PAKVINLSLGGDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR-------------- 200 (285)
T ss_pred CCeEEEeCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC--------------
Confidence 789999999987532 34566667788899999999999999876 5677788999999985421
Q ss_pred EeeeeccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCC
Q 004101 374 LYGESMYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEI 453 (773)
Q Consensus 374 ~~g~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~ 453 (773)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCCc
Q 004101 454 NLEEDSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVN 533 (773)
Q Consensus 454 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~ 533 (773)
+.++.||++||.. ||+|||++
T Consensus 201 ---------------------------------------------------~~~~~~S~~g~~v--------di~apG~~ 221 (285)
T cd07496 201 ---------------------------------------------------GQRASYSNYGPAV--------DVSAPGGD 221 (285)
T ss_pred ---------------------------------------------------CCcccccCCCCCC--------CEEeCCCC
Confidence 1577899999987 99999999
Q ss_pred eEeccCCCCCCC--CCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 004101 534 IIAAWPQNLGPS--SLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTT 595 (773)
Q Consensus 534 I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~T 595 (773)
|.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 222 i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 222 CASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 998876432110 00111223578999999999999999999999999999999999999976
No 23
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.4e-42 Score=360.17 Aligned_cols=253 Identities=34% Similarity=0.416 Sum_probs=187.9
Q ss_pred ccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcccccCCCCCC
Q 004101 151 GSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEYVSPRDS 230 (773)
Q Consensus 151 gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 230 (773)
||+|||||||||++||+|.+. +...++|..+. ........|.
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~~-----------~~~~~~~~d~ 42 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDENR-----------RISATEVFDA 42 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCCC-----------CCCCCCCCCC
Confidence 799999999999999999742 11111222110 0111345678
Q ss_pred CCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCCCCHHHHHHHHHHhhhCCCcEEEeccCCCCCCC
Q 004101 231 TGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNGCYSSDILAAMDVAIRDGVDVLSLSLGGFPLPL 310 (773)
Q Consensus 231 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~g~dVIn~SlG~~~~~~ 310 (773)
.+|||||||||+|+.. ++...||||+|+|+.+|++...++..++++++|+|+++.+++|||||||.....
T Consensus 43 ~~HGT~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~- 112 (254)
T cd07490 43 GGHGTHVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS- 112 (254)
T ss_pred CCcHHHHHHHHhcCCC---------CCCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC-
Confidence 8999999999999853 223479999999999999988778889999999999999999999999987533
Q ss_pred cccHHHHHHHHHHh-CCCEEEEeCCCCCCCCCccccCCCceEEEcCcCCCccceeEEEeCCCeEEeeeeccCCCCCCCCC
Q 004101 311 FDDSIAIGSFRAME-HGISVVCAAGNNGPLQSSVANIAPWIATVGASTLDRRFPAIVRMADGGLLYGESMYPGNQFSKTE 389 (773)
Q Consensus 311 ~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~ 389 (773)
.+.+..+...+.+ +|++||+||||+|......+...+++|+|||++.+....
T Consensus 113 -~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~-------------------------- 165 (254)
T cd07490 113 -EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDA-------------------------- 165 (254)
T ss_pred -CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCcc--------------------------
Confidence 4445544444443 699999999999988777888899999999976433100
Q ss_pred ceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCcccccccccccEEE
Q 004101 390 KELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDSVDVHVLPATL 469 (773)
Q Consensus 390 ~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~ 469 (773)
.+ .
T Consensus 166 -----~~--s---------------------------------------------------------------------- 168 (254)
T cd07490 166 -----WF--S---------------------------------------------------------------------- 168 (254)
T ss_pred -----Cc--c----------------------------------------------------------------------
Confidence 00 0
Q ss_pred EehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCCceEeccCCCCCCCCCCC
Q 004101 470 VGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPE 549 (773)
Q Consensus 470 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 549 (773)
..........+.+|.. .....||||+|||.+|+++....
T Consensus 169 --------------------------------~~g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~-------- 207 (254)
T cd07490 169 --------------------------------SFGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA-------- 207 (254)
T ss_pred --------------------------------CCcccccccccCCCCC-ccCCcCceEEeccCCeEccccCC--------
Confidence 0000112222333433 14568999999999999965321
Q ss_pred CCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004101 550 DNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTAD 597 (773)
Q Consensus 550 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 597 (773)
.....|..++|||||||+|||++|||++++|+|++.+||++|++||+
T Consensus 208 -~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 208 -NGDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred -CCCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 11268999999999999999999999999999999999999999985
No 24
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=2.1e-41 Score=362.70 Aligned_cols=277 Identities=29% Similarity=0.361 Sum_probs=199.9
Q ss_pred cCCCCCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCccccc
Q 004101 145 ESQFGHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEY 224 (773)
Q Consensus 145 ~~~~G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 224 (773)
++++|+||+|||||||||++||+|.+... .+..| .++++.....+.+
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~~----~~~~~~~~~~~~~----------------- 48 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTNL----FHRKIVRYDSLSD----------------- 48 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCcc----CcccEEEeeccCC-----------------
Confidence 57899999999999999999999975321 00111 2334433322221
Q ss_pred CCCCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC--CCHHHHHHHHHHhhhCCCcEEEec
Q 004101 225 VSPRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG--CYSSDILAAMDVAIRDGVDVLSLS 302 (773)
Q Consensus 225 ~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~A~~~g~dVIn~S 302 (773)
...|..+|||||||||+|....... ...+.|+||+|+|+.+|+++..+ ....++..+++++.+.+++|||||
T Consensus 49 -~~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S 122 (293)
T cd04842 49 -TKDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNS 122 (293)
T ss_pred -CCCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEecc
Confidence 1227899999999999998643321 11348999999999999998765 556678899999999999999999
Q ss_pred cCCCCCCCcccHHHHHHHHHH-h-CCCEEEEeCCCCCCCCC---ccccCCCceEEEcCcCCCccceeEEEeCCCeEEeee
Q 004101 303 LGGFPLPLFDDSIAIGSFRAM-E-HGISVVCAAGNNGPLQS---SVANIAPWIATVGASTLDRRFPAIVRMADGGLLYGE 377 (773)
Q Consensus 303 lG~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~ 377 (773)
||......+ .....+..++. + +|+++|+||||+|.... ..+...+++|+|||++.+.....
T Consensus 123 ~G~~~~~~~-~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~------------- 188 (293)
T cd04842 123 WGSPVNNGY-TLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG------------- 188 (293)
T ss_pred CCCCCcccc-chHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc-------------
Confidence 998753211 22222222332 3 89999999999997764 66778899999999764432000
Q ss_pred eccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCcc
Q 004101 378 SMYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEE 457 (773)
Q Consensus 378 ~~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 457 (773)
..|..
T Consensus 189 ---------------------------~~~~~------------------------------------------------ 193 (293)
T cd04842 189 ---------------------------EGGLG------------------------------------------------ 193 (293)
T ss_pred ---------------------------ccccc------------------------------------------------
Confidence 00000
Q ss_pred cccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCCceEec
Q 004101 458 DSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAA 537 (773)
Q Consensus 458 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa 537 (773)
.......++.||++||+. ++++||||+|||++|+++
T Consensus 194 ------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~ 229 (293)
T cd04842 194 ------------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSA 229 (293)
T ss_pred ------------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEec
Confidence 001123789999999998 789999999999999998
Q ss_pred cCCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhC-----C---CCCHHHHHHHHHhccc
Q 004101 538 WPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAY-----P---KWSPAAIKSAIMTTAD 597 (773)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----P---~~s~~~ik~~L~~TA~ 597 (773)
.+... .........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 230 ~~~~~----~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 230 RSGGG----GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred cCCCC----CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 75420 0011222688999999999999999999999985 4 6677899999999985
No 25
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-41 Score=362.18 Aligned_cols=253 Identities=26% Similarity=0.295 Sum_probs=184.1
Q ss_pred CCCCcccCCCCCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCC
Q 004101 139 NGGAWYESQFGHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSP 218 (773)
Q Consensus 139 ~~~~~~~~~~G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 218 (773)
...+|+.+++|+||+||||||||+..|| |...+.. + ++ .+..+
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~---------------~~----~~~~~---------- 52 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V---------------RV----VLAPG---------- 52 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c---------------ee----ecCCC----------
Confidence 4569999999999999999999999998 6532110 0 00 01000
Q ss_pred CcccccCCCCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCCCCHHHHHHHHHHhhhCCCcE
Q 004101 219 NIIQEYVSPRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNGCYSSDILAAMDVAIRDGVDV 298 (773)
Q Consensus 219 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~g~dV 298 (773)
......|..|||||||+++ .||||+|+|+.+|++++ ..+++++||+||++.+++|
T Consensus 53 ----~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dV 107 (298)
T cd07494 53 ----ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDI 107 (298)
T ss_pred ----CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCE
Confidence 0023567889999999876 59999999999999874 4567899999999999999
Q ss_pred EEeccCCCCCC----------CcccHHHHHHHHHHhCCCEEEEeCCCCCCCCCccccCCCceEEEcCcCCCccceeEEEe
Q 004101 299 LSLSLGGFPLP----------LFDDSIAIGSFRAMEHGISVVCAAGNNGPLQSSVANIAPWIATVGASTLDRRFPAIVRM 368 (773)
Q Consensus 299 In~SlG~~~~~----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~ 368 (773)
||||||..... .....+..++.+|.++|++||+||||++. .+|...|++|+|||++.+..-
T Consensus 108 In~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~g------ 178 (298)
T cd07494 108 ISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDEDG------ 178 (298)
T ss_pred EEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCCC------
Confidence 99999986321 12345777777889999999999999874 468889999999997543310
Q ss_pred CCCeEEeeeeccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEE
Q 004101 369 ADGGLLYGESMYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMIL 448 (773)
Q Consensus 369 ~~g~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~ 448 (773)
. .. .
T Consensus 179 ---------------------~-~~--~---------------------------------------------------- 182 (298)
T cd07494 179 ---------------------A-RR--A---------------------------------------------------- 182 (298)
T ss_pred ---------------------c-cc--c----------------------------------------------------
Confidence 0 00 0
Q ss_pred eccCCCCcccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCce-
Q 004101 449 ANTEINLEEDSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDV- 527 (773)
Q Consensus 449 ~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI- 527 (773)
....+.|++. ..+++.|||+
T Consensus 183 -------------------------------------------------------~~~~~~~~s~----~~~g~~~pd~~ 203 (298)
T cd07494 183 -------------------------------------------------------SSYASGFRSK----IYPGRQVPDVC 203 (298)
T ss_pred -------------------------------------------------------cccccCcccc----cCCCCccCccc
Confidence 0001111111 1245667776
Q ss_pred ---------------EeCCCceEeccCCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHH
Q 004101 528 ---------------IAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAI 592 (773)
Q Consensus 528 ---------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L 592 (773)
+|||..|.++..... ........|..++|||||||||||++|||+|++|.|+++|||.+|
T Consensus 204 ~~~g~~~~~~~~~~~~APG~~i~~~~~~~~-----~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l 278 (298)
T cd07494 204 GLVGMLPHAAYLMLPVPPGSQLDRSCAAFP-----DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLL 278 (298)
T ss_pred cccCcCCcccccccccCCCcceeccccCCC-----CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 479999876553210 001112679999999999999999999999999999999999999
Q ss_pred HhccccCCCC
Q 004101 593 MTTADGNDHF 602 (773)
Q Consensus 593 ~~TA~~~~~~ 602 (773)
++||+++...
T Consensus 279 ~~ta~~~~~~ 288 (298)
T cd07494 279 NKTARDVTKG 288 (298)
T ss_pred HHhCcccCCC
Confidence 9999987653
No 26
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.8e-41 Score=351.51 Aligned_cols=239 Identities=31% Similarity=0.401 Sum_probs=188.8
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcccccCCCCCCC
Q 004101 152 SIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEYVSPRDST 231 (773)
Q Consensus 152 v~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 231 (773)
|+|||||+|||++||+|.+. .+++..+++.... ....|..
T Consensus 1 V~VaviDsGi~~~hp~l~~~-------------------------~~~~~~~~~~~~~---------------~~~~~~~ 40 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGK-------------------------PKLVPGWNFVSNN---------------DPTSDID 40 (242)
T ss_pred CEEEEecCCCCCCChhhccC-------------------------cCccCCccccCCC---------------CCCCCCC
Confidence 68999999999999999842 0111111111110 2356789
Q ss_pred CCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC-CCHHHHHHHHHHhhhCCCcEEEeccCCCCC-C
Q 004101 232 GHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG-CYSSDILAAMDVAIRDGVDVLSLSLGGFPL-P 309 (773)
Q Consensus 232 gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVIn~SlG~~~~-~ 309 (773)
+|||||||||+|+..+. ..+.|+||+|+|+.+|++...+ +..+++.++++|+++.+++|||||||.... .
T Consensus 41 ~HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~ 112 (242)
T cd07498 41 GHGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTE 112 (242)
T ss_pred CCHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCc
Confidence 99999999999975322 2247999999999999998765 678889999999999999999999998742 3
Q ss_pred CcccHHHHHHHHHHh-CCCEEEEeCCCCCCCCCccccCCCceEEEcCcCCCccceeEEEeCCCeEEeeeeccCCCCCCCC
Q 004101 310 LFDDSIAIGSFRAME-HGISVVCAAGNNGPLQSSVANIAPWIATVGASTLDRRFPAIVRMADGGLLYGESMYPGNQFSKT 388 (773)
Q Consensus 310 ~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 388 (773)
.....+..+..++.+ +|+++|+||||+|......+...+++|+|||++.+
T Consensus 113 ~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~----------------------------- 163 (242)
T cd07498 113 SISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN----------------------------- 163 (242)
T ss_pred hHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC-----------------------------
Confidence 345666666777888 99999999999998877778889999999985411
Q ss_pred CceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCcccccccccccEE
Q 004101 389 EKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDSVDVHVLPAT 468 (773)
Q Consensus 389 ~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~ 468 (773)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCCceEeccCCCCCCCCCC
Q 004101 469 LVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLP 548 (773)
Q Consensus 469 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~ 548 (773)
+.+++||++||.. |++|||+++..........
T Consensus 164 ------------------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~---- 195 (242)
T cd07498 164 ------------------------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA---- 195 (242)
T ss_pred ------------------------------------CCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----
Confidence 1567899999987 9999999998875432111
Q ss_pred CCCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 004101 549 EDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTT 595 (773)
Q Consensus 549 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~T 595 (773)
.....+.|..++|||||||+|||++|||+|++|+|++.|||++|++|
T Consensus 196 ~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 196 GDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred ccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 11223678999999999999999999999999999999999999976
No 27
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.8e-41 Score=352.28 Aligned_cols=245 Identities=23% Similarity=0.257 Sum_probs=175.5
Q ss_pred CCCCcccCC-CCCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCC
Q 004101 139 NGGAWYESQ-FGHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMS 217 (773)
Q Consensus 139 ~~~~~~~~~-~G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~ 217 (773)
+..+|+... .|+||+|+|||+|||.+||+|.++... ...+
T Consensus 4 ~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~------------------------------~~~~--------- 44 (277)
T cd04843 4 ARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT------------------------------LISG--------- 44 (277)
T ss_pred hHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc------------------------------ccCC---------
Confidence 345888744 589999999999999999999843110 0000
Q ss_pred CCcccccCCCCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCCCCHHHHHHHHHHhhh----
Q 004101 218 PNIIQEYVSPRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNGCYSSDILAAMDVAIR---- 293 (773)
Q Consensus 218 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~---- 293 (773)
..+.|+++|||||||||||..+ ..| +.||||+|+|+.+|+++ .++++++|++|++
T Consensus 45 -------~~~~d~~gHGT~VAGiIaa~~n--------~~G-~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~ 103 (277)
T cd04843 45 -------LTDQADSDHGTAVLGIIVAKDN--------GIG-VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSP 103 (277)
T ss_pred -------CCCCCCCCCcchhheeeeeecC--------CCc-eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCC
Confidence 1145778999999999998631 122 37999999999999986 2345666666666
Q ss_pred CCCcEEEeccCCCCCC------CcccHHHHHHHHHHhCCCEEEEeCCCCCCCCCcc------------cc-CCCceEEEc
Q 004101 294 DGVDVLSLSLGGFPLP------LFDDSIAIGSFRAMEHGISVVCAAGNNGPLQSSV------------AN-IAPWIATVG 354 (773)
Q Consensus 294 ~g~dVIn~SlG~~~~~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~------------~~-~~p~vitVg 354 (773)
.++.+||||||..... .....+..++.++.++|+++|+||||++...... +. ..+++|+||
T Consensus 104 ~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~Vg 183 (277)
T cd04843 104 GDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVG 183 (277)
T ss_pred CCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEE
Confidence 4577899999986321 1233445567788899999999999998652111 11 124566666
Q ss_pred CcCCCccceeEEEeCCCeEEeeeeccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhH
Q 004101 355 ASTLDRRFPAIVRMADGGLLYGESMYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEK 434 (773)
Q Consensus 355 A~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~ 434 (773)
|++.+.
T Consensus 184 A~~~~~-------------------------------------------------------------------------- 189 (277)
T cd04843 184 AGSSTT-------------------------------------------------------------------------- 189 (277)
T ss_pred eccCCC--------------------------------------------------------------------------
Confidence 643110
Q ss_pred HHHHHHcCceEEEEeccCCCCcccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCC
Q 004101 435 GQVVKEAGGAAMILANTEINLEEDSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARG 514 (773)
Q Consensus 435 ~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~G 514 (773)
...++.||++|
T Consensus 190 ---------------------------------------------------------------------~~~~~~fSn~G 200 (277)
T cd04843 190 ---------------------------------------------------------------------GHTRLAFSNYG 200 (277)
T ss_pred ---------------------------------------------------------------------CCccccccCCC
Confidence 01378899999
Q ss_pred CCCCCCCcccCceEeCCCceEeccCCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHH----h-CCCCCHHHHH
Q 004101 515 PSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRS----A-YPKWSPAAIK 589 (773)
Q Consensus 515 P~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~P~~s~~~ik 589 (773)
|.. ||.|||++|+++.+..... ......+.|..++|||||||||||++|||++ + +|+|+++|||
T Consensus 201 ~~v--------di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~ 269 (277)
T cd04843 201 SRV--------DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMR 269 (277)
T ss_pred Ccc--------ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHH
Confidence 977 9999999999998764311 0111123457899999999999999999975 3 4999999999
Q ss_pred HHHHhccc
Q 004101 590 SAIMTTAD 597 (773)
Q Consensus 590 ~~L~~TA~ 597 (773)
++|+.|++
T Consensus 270 ~~L~~t~~ 277 (277)
T cd04843 270 ELLTATGT 277 (277)
T ss_pred HHHHhcCC
Confidence 99999974
No 28
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.3e-40 Score=347.07 Aligned_cols=249 Identities=31% Similarity=0.415 Sum_probs=188.9
Q ss_pred CccEEEEEccCCCCCCCCCCCCCCCCCCCccccc---cccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcccccCC
Q 004101 150 HGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGV---CQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEYVS 226 (773)
Q Consensus 150 ~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~---~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (773)
+||+|||||||||++||+|.+. .|... +..+.+.. . . .|.+....+ +...+..+
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~---~-~------~~~~~~~~~------~~~~~~~~ 58 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDD---G-N------GYVDDIYGW------NFVNNDND 58 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccC---C-C------CcccCCCcc------cccCCCCC
Confidence 6899999999999999999864 23211 11111110 0 0 011110000 00112245
Q ss_pred CCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC-CCHHHHHHHHHHhhhCCCcEEEeccCC
Q 004101 227 PRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG-CYSSDILAAMDVAIRDGVDVLSLSLGG 305 (773)
Q Consensus 227 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVIn~SlG~ 305 (773)
+.|..+|||||||||+|...+. ..+.|+||+|+|+.+|++...+ ++..+++++|+++++.+++|||+|||.
T Consensus 59 ~~d~~~HGT~va~ii~~~~~~~--------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~ 130 (259)
T cd07473 59 PMDDNGHGTHVAGIIGAVGNNG--------IGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGG 130 (259)
T ss_pred CCCCCCcHHHHHHHHHCcCCCC--------CceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 6788999999999999975322 2247999999999999998877 888899999999999999999999998
Q ss_pred CCCCCcccHHHHHHHHHHhCCCEEEEeCCCCCCCC---Ccccc--CCCceEEEcCcCCCccceeEEEeCCCeEEeeeecc
Q 004101 306 FPLPLFDDSIAIGSFRAMEHGISVVCAAGNNGPLQ---SSVAN--IAPWIATVGASTLDRRFPAIVRMADGGLLYGESMY 380 (773)
Q Consensus 306 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~ 380 (773)
... ...+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+.+
T Consensus 131 ~~~---~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~--------------------- 186 (259)
T cd07473 131 GGP---SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN--------------------- 186 (259)
T ss_pred CCC---CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC---------------------
Confidence 743 45666667788899999999999998762 23333 24778888874311
Q ss_pred CCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCccccc
Q 004101 381 PGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDSV 460 (773)
Q Consensus 381 ~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 460 (773)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCCceEeccCC
Q 004101 461 DVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQ 540 (773)
Q Consensus 461 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~ 540 (773)
+.++.||++||. +||+.|||.++++..+.
T Consensus 187 --------------------------------------------~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~ 215 (259)
T cd07473 187 --------------------------------------------DALASFSNYGKK-------TVDLAAPGVDILSTSPG 215 (259)
T ss_pred --------------------------------------------CCcCcccCCCCC-------CcEEEeccCCeEeccCC
Confidence 155668999985 46999999999997654
Q ss_pred CCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004101 541 NLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTAD 597 (773)
Q Consensus 541 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 597 (773)
+.|..++|||||||+|||++||++|++|.+++.+||++|++||+
T Consensus 216 -------------~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 216 -------------GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred -------------CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 58999999999999999999999999999999999999999985
No 29
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=4.6e-40 Score=339.43 Aligned_cols=226 Identities=35% Similarity=0.551 Sum_probs=184.9
Q ss_pred ccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcccccCCCCCC
Q 004101 151 GSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEYVSPRDS 230 (773)
Q Consensus 151 gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 230 (773)
||+|||||+||+++||+|.+. ++..++|..... ....|.
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~~~--------------~~~~~~ 39 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGDDN--------------NDYQDG 39 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCCCC--------------CCCCCC
Confidence 799999999999999999742 111222222110 235678
Q ss_pred CCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC-CCHHHHHHHHHHhhhCCCcEEEeccCCCCCC
Q 004101 231 TGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG-CYSSDILAAMDVAIRDGVDVLSLSLGGFPLP 309 (773)
Q Consensus 231 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVIn~SlG~~~~~ 309 (773)
.+|||||||||++..... .+.|+||+|+|+.+|+++..+ +...++++++++|++.|++|||||||....
T Consensus 40 ~~HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~- 109 (229)
T cd07477 40 NGHGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSD- 109 (229)
T ss_pred CCCHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCCC-
Confidence 899999999999975321 347999999999999998876 677899999999999999999999998642
Q ss_pred CcccHHHHHHHHHHhCCCEEEEeCCCCCCCCCcc--ccCCCceEEEcCcCCCccceeEEEeCCCeEEeeeeccCCCCCCC
Q 004101 310 LFDDSIAIGSFRAMEHGISVVCAAGNNGPLQSSV--ANIAPWIATVGASTLDRRFPAIVRMADGGLLYGESMYPGNQFSK 387 (773)
Q Consensus 310 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 387 (773)
...+..+...+.++|+++|+||||++...... +...+++|+||+++.+.
T Consensus 110 --~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~~--------------------------- 160 (229)
T cd07477 110 --SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSNN--------------------------- 160 (229)
T ss_pred --CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCCC---------------------------
Confidence 23445555688899999999999999876654 77889999999854221
Q ss_pred CCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCcccccccccccE
Q 004101 388 TEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDSVDVHVLPA 467 (773)
Q Consensus 388 ~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~ 467 (773)
T Consensus 161 -------------------------------------------------------------------------------- 160 (229)
T cd07477 161 -------------------------------------------------------------------------------- 160 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCCceEeccCCCCCCCCC
Q 004101 468 TLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSL 547 (773)
Q Consensus 468 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 547 (773)
.++.||++|+.. |+.|||.+|+++++.
T Consensus 161 --------------------------------------~~~~~s~~g~~~--------~~~apg~~i~~~~~~------- 187 (229)
T cd07477 161 --------------------------------------NRASFSSTGPEV--------ELAAPGVDILSTYPN------- 187 (229)
T ss_pred --------------------------------------CcCCccCCCCCc--------eEEeCCCCeEEecCC-------
Confidence 456789999876 999999999998876
Q ss_pred CCCCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 004101 548 PEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTT 595 (773)
Q Consensus 548 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~T 595 (773)
+.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 188 ------~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 188 ------NDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred ------CCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 578999999999999999999999999999999999999976
No 30
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-40 Score=344.21 Aligned_cols=156 Identities=18% Similarity=0.215 Sum_probs=118.1
Q ss_pred CCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcccccCCCC
Q 004101 149 GHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEYVSPR 228 (773)
Q Consensus 149 G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (773)
+++|+|||||||||++||+|.++ ++..++|...... + ........
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~--~------~~~~~~~~ 46 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGD--G------NKVSPYYV 46 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCC--c------ccCCCCCC
Confidence 68999999999999999999742 1122222221100 0 00011235
Q ss_pred CCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC-------CCHHHHHHHHHHhhhCCCcEEEe
Q 004101 229 DSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG-------CYSSDILAAMDVAIRDGVDVLSL 301 (773)
Q Consensus 229 d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-------~~~~~i~~ai~~A~~~g~dVIn~ 301 (773)
|..||||||||||+ |+||+|+|+.+|+++..+ ++...+++||+||+++|+|||||
T Consensus 47 d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~ 108 (247)
T cd07491 47 SADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISM 108 (247)
T ss_pred CCCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEe
Confidence 78899999999994 899999999999998643 45678999999999999999999
Q ss_pred ccCCCCCC---CcccHHHHHHHHHHhCCCEEEEeCCCCCCCCC-c--cccCCCceEEEcCcC
Q 004101 302 SLGGFPLP---LFDDSIAIGSFRAMEHGISVVCAAGNNGPLQS-S--VANIAPWIATVGAST 357 (773)
Q Consensus 302 SlG~~~~~---~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~--~~~~~p~vitVgA~~ 357 (773)
|||..... .....+..++.+|.++|++||+||||+|.... . .+...+++|+|||++
T Consensus 109 S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 109 SWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred eeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 99986421 12566777788999999999999999998754 3 345678999999865
No 31
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.2e-39 Score=347.09 Aligned_cols=145 Identities=34% Similarity=0.464 Sum_probs=107.7
Q ss_pred ccCCCCCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcccc
Q 004101 144 YESQFGHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQE 223 (773)
Q Consensus 144 ~~~~~G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~ 223 (773)
..+++|+||+|||||||||.+||+|.+.. +...+|.+.
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~---------------------------~~~~~~~~~--------------- 39 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD---------------------------ITTKSFVGG--------------- 39 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc---------------------------ccCcccCCC---------------
Confidence 35789999999999999999999997431 111122211
Q ss_pred cCCCCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC-CCHHHHHHHHHHhhhCCCcEEEec
Q 004101 224 YVSPRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG-CYSSDILAAMDVAIRDGVDVLSLS 302 (773)
Q Consensus 224 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVIn~S 302 (773)
....|..||||||||||+|+... +...||||+|+|+.+|++...+ ....++++||+||++.|++|||||
T Consensus 40 -~~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S 109 (297)
T cd07480 40 -EDVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMS 109 (297)
T ss_pred -CCCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEec
Confidence 12567899999999999997532 2236999999999999997755 777789999999999999999999
Q ss_pred cCCCCC----------CCcccHHHHHHHHH---------------HhCCCEEEEeCCCCCCCC
Q 004101 303 LGGFPL----------PLFDDSIAIGSFRA---------------MEHGISVVCAAGNNGPLQ 340 (773)
Q Consensus 303 lG~~~~----------~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~ 340 (773)
||.... ......+......+ .++|++||+||||++...
T Consensus 110 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~ 172 (297)
T cd07480 110 LGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRP 172 (297)
T ss_pred cCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCC
Confidence 998531 11112222222233 679999999999998653
No 32
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=3.8e-39 Score=345.48 Aligned_cols=150 Identities=29% Similarity=0.346 Sum_probs=106.0
Q ss_pred ccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcccccCCCCCC
Q 004101 151 GSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEYVSPRDS 230 (773)
Q Consensus 151 gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 230 (773)
.|+|||||||||++||+|.+.-... .+.+......... ......+.....|.
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~--------------------------~~~~~~~~~~~~~--~~~~~~~~~~~~d~ 52 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSY--------------------------SKNLVPKGGYDGK--EAGETGDINDIVDK 52 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccc--------------------------ccccccCCCcCCc--cccccCCCCcCCCC
Confidence 4899999999999999998421100 0001000000000 00111112345678
Q ss_pred CCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC-CCHHHHHHHHHHhhhCCCcEEEeccCCCCCC
Q 004101 231 TGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG-CYSSDILAAMDVAIRDGVDVLSLSLGGFPLP 309 (773)
Q Consensus 231 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVIn~SlG~~~~~ 309 (773)
.||||||||+|+|+.. ..||||+|+|+.+|+++..+ ....+++++|++|++++++|||||||.....
T Consensus 53 ~gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~ 120 (294)
T cd07482 53 LGHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLII 120 (294)
T ss_pred CCcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCC
Confidence 9999999999998631 15999999999999998877 4888999999999999999999999976321
Q ss_pred C--------cccHHHHHHHHHHhCCCEEEEeCCCCCCCC
Q 004101 310 L--------FDDSIAIGSFRAMEHGISVVCAAGNNGPLQ 340 (773)
Q Consensus 310 ~--------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~ 340 (773)
. ..+.+..++..+.++|++||+||||+|...
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 121 GGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred CcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 1 123455566677899999999999999653
No 33
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.6e-39 Score=330.27 Aligned_cols=221 Identities=26% Similarity=0.313 Sum_probs=172.2
Q ss_pred ccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcccccCCCCCC
Q 004101 151 GSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEYVSPRDS 230 (773)
Q Consensus 151 gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 230 (773)
||+|||||||||++||+|.+.-.. .+.+..+. . ........|.
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~---------------------------~~~~~~~~-~---------~~~~~~~~d~ 43 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD---------------------------GEVTIDLE-I---------IVVSAEGGDK 43 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc---------------------------cccccccc-c---------ccCCCCCCCC
Confidence 799999999999999999843110 01110000 0 0011345678
Q ss_pred CCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC-CCHHHHHHHHHHhhhCCCcEEEeccCCCCCC
Q 004101 231 TGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG-CYSSDILAAMDVAIRDGVDVLSLSLGGFPLP 309 (773)
Q Consensus 231 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVIn~SlG~~~~~ 309 (773)
.||||||||||++ .+|+++|+.+|+++..+ +..+++++||+|++++|++|||||||.....
T Consensus 44 ~gHGT~vAgiia~------------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~ 105 (222)
T cd07492 44 DGHGTACAGIIKK------------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR 105 (222)
T ss_pred CCcHHHHHHHHHc------------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC
Confidence 9999999999974 45999999999998876 7888999999999999999999999987532
Q ss_pred CcccHHHHHHHHHHhCCCEEEEeCCCCCCCCCccccCCCceEEEcCcCCCccceeEEEeCCCeEEeeeeccCCCCCCCCC
Q 004101 310 LFDDSIAIGSFRAMEHGISVVCAAGNNGPLQSSVANIAPWIATVGASTLDRRFPAIVRMADGGLLYGESMYPGNQFSKTE 389 (773)
Q Consensus 310 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~ 389 (773)
....+..++.++.++|+++|+||||++.... .+...+++|+|++.+.++
T Consensus 106 -~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~----------------------------- 154 (222)
T cd07492 106 -DFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD----------------------------- 154 (222)
T ss_pred -cCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC-----------------------------
Confidence 2245556666888899999999999987543 366778899999743111
Q ss_pred ceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCcccccccccccEEE
Q 004101 390 KELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDSVDVHVLPATL 469 (773)
Q Consensus 390 ~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~ 469 (773)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCCceEeccCCCCCCCCCCC
Q 004101 470 VGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGPSSLPE 549 (773)
Q Consensus 470 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 549 (773)
.. +.+++ ++|+.|||.+|+++.+.
T Consensus 155 ------------------------------------~~---~~~~~--------~~~~~apg~~i~~~~~~--------- 178 (222)
T cd07492 155 ------------------------------------PK---SFWYI--------YVEFSADGVDIIAPAPH--------- 178 (222)
T ss_pred ------------------------------------Cc---ccccC--------CceEEeCCCCeEeecCC---------
Confidence 00 11133 34999999999998876
Q ss_pred CCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004101 550 DNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTAD 597 (773)
Q Consensus 550 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 597 (773)
+.|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 179 ----~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 179 ----GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ----CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999985
No 34
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=2.5e-39 Score=347.36 Aligned_cols=248 Identities=23% Similarity=0.227 Sum_probs=179.5
Q ss_pred CCCCcccCCCCCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCC
Q 004101 139 NGGAWYESQFGHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSP 218 (773)
Q Consensus 139 ~~~~~~~~~~G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 218 (773)
...+|..+++|+||+|+|||||||+.||+|.+.... ...++|..+..
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~~-------- 74 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDNDP-------- 74 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCCC--------
Confidence 556999999999999999999999999999843111 01112222110
Q ss_pred CcccccCCC--CCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCCCCHHHHHHHHHHhhhCCC
Q 004101 219 NIIQEYVSP--RDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNGCYSSDILAAMDVAIRDGV 296 (773)
Q Consensus 219 ~~~~~~~~~--~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~g~ 296 (773)
. ..+ .|..||||||||||+|+.... ....||||+|+|+.+|+++.. .....+..++.++.+ .+
T Consensus 75 -~----~~~~~~~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~ 139 (297)
T cd04059 75 -D----PTPRYDDDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YI 139 (297)
T ss_pred -C----CCCccccccccCcceeeEEEeecCCC--------cccccccccceEeEEEecCCc-cccHHHHHHHhcccC-Cc
Confidence 0 112 378899999999999985221 123799999999999998765 334455666666654 45
Q ss_pred cEEEeccCCCCCC----CcccHHHHHHHHHHh-----CCCEEEEeCCCCCCCCCc----cccCCCceEEEcCcCCCccce
Q 004101 297 DVLSLSLGGFPLP----LFDDSIAIGSFRAME-----HGISVVCAAGNNGPLQSS----VANIAPWIATVGASTLDRRFP 363 (773)
Q Consensus 297 dVIn~SlG~~~~~----~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVgA~~~~~~~~ 363 (773)
+|||||||..... ........+..++.+ +|++||+||||+|..... .....+++|+|||++.+
T Consensus 140 ~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~---- 215 (297)
T cd04059 140 DIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN---- 215 (297)
T ss_pred eEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC----
Confidence 9999999976422 122233333334443 699999999999973221 22346788888875421
Q ss_pred eEEEeCCCeEEeeeeccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCc
Q 004101 364 AIVRMADGGLLYGESMYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGG 443 (773)
Q Consensus 364 ~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga 443 (773)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeccCCCCcccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcc
Q 004101 444 AAMILANTEINLEEDSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTIL 523 (773)
Q Consensus 444 ~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~ 523 (773)
+.++.||++|+..
T Consensus 216 -------------------------------------------------------------g~~~~~s~~g~~~------ 228 (297)
T cd04059 216 -------------------------------------------------------------GVRASYSEVGSSV------ 228 (297)
T ss_pred -------------------------------------------------------------CCCcCCCCCCCcE------
Confidence 2567899999987
Q ss_pred cCceEeCCCc-------eEeccCCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 004101 524 KPDVIAPGVN-------IIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTA 596 (773)
Q Consensus 524 KPDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA 596 (773)
++.|||.. |+++.... ....|..++|||||||+|||++|||+|+||+|++.|||++|++||
T Consensus 229 --~~~a~g~~~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA 296 (297)
T cd04059 229 --LASAPSGGSGNPEASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTA 296 (297)
T ss_pred --EEEecCCCCCCCCCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhc
Confidence 89999987 66655431 014678899999999999999999999999999999999999998
Q ss_pred c
Q 004101 597 D 597 (773)
Q Consensus 597 ~ 597 (773)
+
T Consensus 297 ~ 297 (297)
T cd04059 297 R 297 (297)
T ss_pred C
Confidence 5
No 35
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=7e-38 Score=330.52 Aligned_cols=242 Identities=29% Similarity=0.398 Sum_probs=184.7
Q ss_pred CCCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcccccCCC
Q 004101 148 FGHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEYVSP 227 (773)
Q Consensus 148 ~G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (773)
+|+||+|+|||+||+.+||+|.+...... .+.... .......
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~---------------------------~~~~~~-----------~~~~~~~ 42 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS---------------------------YYVAVN-----------DAGYASN 42 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc---------------------------cccccc-----------cccCCCC
Confidence 69999999999999999999985321100 000000 0001235
Q ss_pred CCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC--CCHHHHHHHHHHhhhCCCcEEEeccCC
Q 004101 228 RDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG--CYSSDILAAMDVAIRDGVDVLSLSLGG 305 (773)
Q Consensus 228 ~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~A~~~g~dVIn~SlG~ 305 (773)
.|..+|||||||+|+|+... ..+.|+||+|+|+.+|+++..+ .....+.++++++++.+++|||||||.
T Consensus 43 ~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~ 113 (267)
T cd04848 43 GDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGG 113 (267)
T ss_pred CCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCC
Confidence 67889999999999998532 3348999999999999998764 566778999999999999999999998
Q ss_pred CCCC------------CcccHHHHHHHHHHhCCCEEEEeCCCCCCCCCcc---------ccCCCceEEEcCcCCCcccee
Q 004101 306 FPLP------------LFDDSIAIGSFRAMEHGISVVCAAGNNGPLQSSV---------ANIAPWIATVGASTLDRRFPA 364 (773)
Q Consensus 306 ~~~~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---------~~~~p~vitVgA~~~~~~~~~ 364 (773)
.... ...+.+......+.++|+++|+||||++...... +...+++|+||+++.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~---- 189 (267)
T cd04848 114 NPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG---- 189 (267)
T ss_pred CCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC----
Confidence 7522 1445566667788899999999999998654332 23356788888754222
Q ss_pred EEEeCCCeEEeeeeccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCce
Q 004101 365 IVRMADGGLLYGESMYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGA 444 (773)
Q Consensus 365 ~~~~~~g~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~ 444 (773)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccCCCCcccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCcccc--ccCCCCCCCCCCc
Q 004101 445 AMILANTEINLEEDSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQ--FSARGPSLYTPTI 522 (773)
Q Consensus 445 g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~GP~~~~~~~ 522 (773)
.... ||++|+..
T Consensus 190 -------------------------------------------------------------~~~~~~~s~~~~~~----- 203 (267)
T cd04848 190 -------------------------------------------------------------TIASYSYSNRCGVA----- 203 (267)
T ss_pred -------------------------------------------------------------Ccccccccccchhh-----
Confidence 2222 47777643
Q ss_pred ccCceEeCCCceEeccCCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004101 523 LKPDVIAPGVNIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTAD 597 (773)
Q Consensus 523 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 597 (773)
-.++++|||.+|+++.+... ..|..++|||||||+|||++||++|++|+++++|||++|++||+
T Consensus 204 ~~~~~~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 204 ANWCLAAPGENIYSTDPDGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred hhheeecCcCceeecccCCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 23479999999999886311 57889999999999999999999999999999999999999985
No 36
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=5.6e-37 Score=326.58 Aligned_cols=251 Identities=38% Similarity=0.571 Sum_probs=192.7
Q ss_pred EEEEEccCCCCCCCCCC-CCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcccccCCCCCCC
Q 004101 153 IIGVLDTGIWPESPSFD-DHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEYVSPRDST 231 (773)
Q Consensus 153 ~VaVIDTGid~~Hp~f~-d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 231 (773)
+|||||||||++||+|. .+ + ...++.+.+.|.++. .......|..
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~---------------------~~~~~~~~~~~~~~~------------~~~~~~~~~~ 46 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F---------------------IWSKVPGGYNFVDGN------------PNPSPSDDDN 46 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E---------------------EEEEEEEEEETTTTB------------STTTSSSTSS
T ss_pred CEEEEcCCcCCCChhHccCC-c---------------------ccccccceeeccCCC------------CCcCccccCC
Confidence 69999999999999997 21 0 012233445554432 0113467788
Q ss_pred CCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCCCCHHHHHHHHHHhh-hCCCcEEEeccCCC--C-
Q 004101 232 GHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNGCYSSDILAAMDVAI-RDGVDVLSLSLGGF--P- 307 (773)
Q Consensus 232 gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~-~~g~dVIn~SlG~~--~- 307 (773)
+|||||||||+|.. . .+ .....|+||+|+|+.+|+++..+....+++++|++++ +.+++|||||||.. .
T Consensus 47 ~HGT~va~ii~~~~-~-~~-----~~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~ 119 (282)
T PF00082_consen 47 GHGTHVAGIIAGNG-G-NN-----GPGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPP 119 (282)
T ss_dssp SHHHHHHHHHHHTT-S-SS-----SSSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSS
T ss_pred Cccchhhhhccccc-c-cc-----ccccccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccc
Confidence 99999999999985 2 11 1223799999999999998877777888999999999 89999999999883 2
Q ss_pred CCCcccHHHHHHHHHHhCCCEEEEeCCCCCCCCC---ccccCCCceEEEcCcCCCccceeEEEeCCCeEEeeeeccCCCC
Q 004101 308 LPLFDDSIAIGSFRAMEHGISVVCAAGNNGPLQS---SVANIAPWIATVGASTLDRRFPAIVRMADGGLLYGESMYPGNQ 384 (773)
Q Consensus 308 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 384 (773)
.....+.+..+...+.++|+++|+||||+|.... ..+...+++|+||+.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~------------------------- 174 (282)
T PF00082_consen 120 DPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN------------------------- 174 (282)
T ss_dssp HSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT-------------------------
T ss_pred ccccccccccccccccccCcceeeccccccccccccccccccccccccccccccc-------------------------
Confidence 1223344555666788999999999999987654 355556888888864311
Q ss_pred CCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCccccccccc
Q 004101 385 FSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDSVDVHV 464 (773)
Q Consensus 385 ~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~ 464 (773)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCCceEeccCCCCCC
Q 004101 465 LPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLGP 544 (773)
Q Consensus 465 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 544 (773)
+.++.||++|+... ++++||||+|||.+|+++++...
T Consensus 175 ----------------------------------------~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~-- 211 (282)
T PF00082_consen 175 ----------------------------------------GQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSD-- 211 (282)
T ss_dssp ----------------------------------------SSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTE--
T ss_pred ----------------------------------------cccccccccccccc-ccccccccccccccccccccccc--
Confidence 15678999975532 68899999999999998886531
Q ss_pred CCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHHHhccccCC
Q 004101 545 SSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTTADGND 600 (773)
Q Consensus 545 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~ 600 (773)
...|..++|||||||+|||++|||++++|+|++.+||.+|++||++++
T Consensus 212 --------~~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~ 259 (282)
T PF00082_consen 212 --------RGSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLG 259 (282)
T ss_dssp --------SEEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESS
T ss_pred --------cccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC
Confidence 035888999999999999999999999999999999999999999987
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-36 Score=318.15 Aligned_cols=342 Identities=24% Similarity=0.330 Sum_probs=253.5
Q ss_pred CCeEEEEeCCCCCCCccccchHHHHHHHhhhcccC--CCCCCcceEEEecceeeEEEEEcCH-----HHHHHHhCCCCeE
Q 004101 42 LQTYVVQLHPHGVISSLFTSKLHWHLSFIEQTLSS--EEDPASRLLYSYHFAMEGFAAQLTR-----SELESLQKLPDVI 114 (773)
Q Consensus 42 ~~~yIV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~y~~~~ngfs~~l~~-----~~~~~L~~~p~V~ 114 (773)
+..|||.|+.... ...++..+++.|+...-. ..-+....-.+|..-|.-+-++-.. -++++|..+|+|+
T Consensus 49 e~EyIv~F~~y~~----Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk 124 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKP----AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVK 124 (1033)
T ss_pred cceeEEEeccccc----chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCce
Confidence 4789999998765 345677777777643200 0112334445666666666664442 2488999999999
Q ss_pred EEEeCcccccccc------------cCcc---------------c---ccCC-----CC------CCCCcccCCCCCccE
Q 004101 115 AIRPDRRLQVQTT------------YSYK---------------F---LGLS-----PT------NGGAWYESQFGHGSI 153 (773)
Q Consensus 115 ~V~~~~~~~~~~~------------~s~~---------------~---~g~~-----~~------~~~~~~~~~~G~gv~ 153 (773)
.|.|.+.+.+-.. ..-. + |+-. +. ++-+|++|++|++|+
T Consensus 125 ~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~Vk 204 (1033)
T KOG4266|consen 125 VVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVK 204 (1033)
T ss_pred eecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceE
Confidence 9999887654110 0000 0 1000 00 566999999999999
Q ss_pred EEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCCCcccccCCCCCCCCC
Q 004101 154 IGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSPNIIQEYVSPRDSTGH 233 (773)
Q Consensus 154 VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 233 (773)
|||.|||+.-+||.|+.- .-..++++. ....|..||
T Consensus 205 vAiFDTGl~~~HPHFrnv----------------------------KERTNWTNE----------------~tLdD~lgH 240 (1033)
T KOG4266|consen 205 VAIFDTGLRADHPHFRNV----------------------------KERTNWTNE----------------DTLDDNLGH 240 (1033)
T ss_pred EEEeecccccCCccccch----------------------------hhhcCCcCc----------------cccccCccc
Confidence 999999999999999721 111112221 345678999
Q ss_pred ccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC-CCHHHHHHHHHHhhhCCCcEEEeccCCCCCCCcc
Q 004101 234 GTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG-CYSSDILAAMDVAIRDGVDVLSLSLGGFPLPLFD 312 (773)
Q Consensus 234 GThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVIn~SlG~~~~~~~~ 312 (773)
||.|||+|||.. ...|.||+++|+++|||.+.. .+.++.++|+.||+....||+|+|+|++ .+.+
T Consensus 241 GTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP--DfmD 306 (1033)
T KOG4266|consen 241 GTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP--DFMD 306 (1033)
T ss_pred ceeEeeeeccch------------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc--cccc
Confidence 999999999874 126999999999999999876 8899999999999999999999999998 4455
Q ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCCCCCccccCC--CceEEEcCcCCCccceeEEEeCCCeEEeeeeccCCCCCCCCCc
Q 004101 313 DSIAIGSFRAMEHGISVVCAAGNNGPLQSSVANIA--PWIATVGASTLDRRFPAIVRMADGGLLYGESMYPGNQFSKTEK 390 (773)
Q Consensus 313 ~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~--p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~ 390 (773)
.++-.-+.+....+|++|.|+||+|+-.++..+++ ..||.||..
T Consensus 307 ~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI---------------------------------- 352 (1033)
T KOG4266|consen 307 LPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI---------------------------------- 352 (1033)
T ss_pred chHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc----------------------------------
Confidence 66666667888899999999999999888776653 234444421
Q ss_pred eeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCcccccccccccEEEE
Q 004101 391 ELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDSVDVHVLPATLV 470 (773)
Q Consensus 391 ~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i 470 (773)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCC----CCCcccCceEeCCCceEeccCCCCCCCC
Q 004101 471 GFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLY----TPTILKPDVIAPGVNIIAAWPQNLGPSS 546 (773)
Q Consensus 471 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~----~~~~~KPDI~APG~~I~sa~~~~~~~~~ 546 (773)
...+.+|.|||||-+.. ..+++||||++-|.+|...-..
T Consensus 353 -------------------------------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~------ 395 (1033)
T KOG4266|consen 353 -------------------------------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS------ 395 (1033)
T ss_pred -------------------------------cccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc------
Confidence 11238999999997642 3689999999999999765443
Q ss_pred CCCCCcccceEEeccccchhhhhHHHHHHHHH----hCCCCCHHHHHHHHHhccccCCCCC
Q 004101 547 LPEDNRRVNFTVMSGTSMACPHVSGITALIRS----AYPKWSPAAIKSAIMTTADGNDHFG 603 (773)
Q Consensus 547 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~s~~~ik~~L~~TA~~~~~~g 603 (773)
.+...+||||.|+|.|||+++||.+ +.--++|+.+|++|...|.++...+
T Consensus 396 -------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~N 449 (1033)
T KOG4266|consen 396 -------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGPN 449 (1033)
T ss_pred -------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCCc
Confidence 4678899999999999999999976 2344689999999999999998654
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.4e-33 Score=287.75 Aligned_cols=194 Identities=20% Similarity=0.168 Sum_probs=141.4
Q ss_pred CCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCCCCHHHHHHHHHHh--hhCCCcEEEeccC
Q 004101 227 PRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNGCYSSDILAAMDVA--IRDGVDVLSLSLG 304 (773)
Q Consensus 227 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A--~~~g~dVIn~SlG 304 (773)
..|.++|||||||||||. .|++|+++|+..++... ..+.+..+++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~---~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK---SNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC---CCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 568899999999999997 36789999987665221 223456777787 6679999999999
Q ss_pred CCCCCC------cccHHHHHHHHHHhC-CCEEEEeCCCCCCCC-----CccccCCCceEEEcCcCCCccceeEEEeCCCe
Q 004101 305 GFPLPL------FDDSIAIGSFRAMEH-GISVVCAAGNNGPLQ-----SSVANIAPWIATVGASTLDRRFPAIVRMADGG 372 (773)
Q Consensus 305 ~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~-----~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~ 372 (773)
+..... ..+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||++.....
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~---------- 164 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDR---------- 164 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCc----------
Confidence 874221 223455555566655 999999999999853 2345567889999986522210
Q ss_pred EEeeeeccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccC
Q 004101 373 LLYGESMYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTE 452 (773)
Q Consensus 373 ~~~g~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~ 452 (773)
T Consensus 165 -------------------------------------------------------------------------------- 164 (247)
T cd07488 165 -------------------------------------------------------------------------------- 164 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCC
Q 004101 453 INLEEDSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGV 532 (773)
Q Consensus 453 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~ 532 (773)
-..+.||++|-....++..||||+|||+
T Consensus 165 ----------------------------------------------------~~~s~~sn~~~~~~~~~~~~~di~APG~ 192 (247)
T cd07488 165 ----------------------------------------------------FFASDVSNAGSEINSYGRRKVLIVAPGS 192 (247)
T ss_pred ----------------------------------------------------ceecccccccCCCCCCCCceeEEEEeee
Confidence 0234456544322236788999999999
Q ss_pred ceEeccCCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCCCC------HHHHHHHHHhc
Q 004101 533 NIIAAWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWS------PAAIKSAIMTT 595 (773)
Q Consensus 533 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s------~~~ik~~L~~T 595 (773)
+|++ +. +.|..++|||||||||||++|||++++|++. -.++|.+|+.|
T Consensus 193 ~i~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 193 NYNL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred eEEC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 9998 22 4788999999999999999999999988776 44567776655
No 39
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=4.1e-31 Score=273.33 Aligned_cols=196 Identities=38% Similarity=0.534 Sum_probs=157.2
Q ss_pred CCCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCC-CCHHHHHHHHHHhh-hCCCcEEEecc
Q 004101 226 SPRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNG-CYSSDILAAMDVAI-RDGVDVLSLSL 303 (773)
Q Consensus 226 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~-~~g~dVIn~Sl 303 (773)
...+..+||||||++|++...... ..|+||+++|+.+|+....+ .....+++++++++ ..+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 356788999999999998853221 16999999999999988766 67788999999999 89999999999
Q ss_pred CCCCCCCcccHHHHHHHHHHhC-CCEEEEeCCCCCCCCC---ccccCCCceEEEcCcCCCccceeEEEeCCCeEEeeeec
Q 004101 304 GGFPLPLFDDSIAIGSFRAMEH-GISVVCAAGNNGPLQS---SVANIAPWIATVGASTLDRRFPAIVRMADGGLLYGESM 379 (773)
Q Consensus 304 G~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~ 379 (773)
|..... ....+.....++.++ |+++|+|+||++.... ..+...+++|+||+++.+..
T Consensus 110 g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------ 170 (241)
T cd00306 110 GGPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGT------------------ 170 (241)
T ss_pred CCCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCCC------------------
Confidence 987533 234455555577777 9999999999998776 47778899999998653221
Q ss_pred cCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCcccc
Q 004101 380 YPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDS 459 (773)
Q Consensus 380 ~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 459 (773)
T Consensus 171 -------------------------------------------------------------------------------- 170 (241)
T cd00306 171 -------------------------------------------------------------------------------- 170 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCcc-ccccCCCCCCCCCCcccCceEeCCCceEecc
Q 004101 460 VDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAV-AQFSARGPSLYTPTILKPDVIAPGVNIIAAW 538 (773)
Q Consensus 460 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~ 538 (773)
. ..++++|+ |||+.|||.++.+..
T Consensus 171 -----------------------------------------------~~~~~~~~~~--------~~~~~apg~~~~~~~ 195 (241)
T cd00306 171 -----------------------------------------------PASPSSNGGA--------GVDIAAPGGDILSSP 195 (241)
T ss_pred -----------------------------------------------ccCCcCCCCC--------CceEEeCcCCccCcc
Confidence 1 13344443 669999999998751
Q ss_pred CCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 004101 539 PQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSAIMTT 595 (773)
Q Consensus 539 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~T 595 (773)
.. ....+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 196 ~~-----------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 196 TT-----------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred cC-----------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 11 11688999999999999999999999999999999999999875
No 40
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-30 Score=290.24 Aligned_cols=240 Identities=28% Similarity=0.334 Sum_probs=178.0
Q ss_pred CCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCC-C--CCHHHHHHHHHHhhhCCCcEEEeccCCCC
Q 004101 231 TGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFN-G--CYSSDILAAMDVAIRDGVDVLSLSLGGFP 307 (773)
Q Consensus 231 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g--~~~~~i~~ai~~A~~~g~dVIn~SlG~~~ 307 (773)
.-|||||||||+|+..+.. ...||||+|+|+++++.+.. | -+...+.+|+..+++..+||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 4599999999999975543 23699999999999997753 2 44567899999999999999999999874
Q ss_pred -CCCcccHHHHHHHHHHhCCCEEEEeCCCCCCCCCccccC---CCceEEEcCcCCCccceeEEEeCCCeEEeeeeccCCC
Q 004101 308 -LPLFDDSIAIGSFRAMEHGISVVCAAGNNGPLQSSVANI---APWIATVGASTLDRRFPAIVRMADGGLLYGESMYPGN 383 (773)
Q Consensus 308 -~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~---~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 383 (773)
.+.....++..-..+.++|+++|+||||.||...+++.+ ...+|.|||--....
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~m---------------------- 439 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGM---------------------- 439 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHH----------------------
Confidence 344444455444445589999999999999987765543 446777776210000
Q ss_pred CCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCcccccccc
Q 004101 384 QFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDSVDVH 463 (773)
Q Consensus 384 ~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~ 463 (773)
. ...|.+.-
T Consensus 440 --m--~a~y~~~e------------------------------------------------------------------- 448 (1304)
T KOG1114|consen 440 --M--QAEYSVRE------------------------------------------------------------------- 448 (1304)
T ss_pred --H--Hhhhhhhc-------------------------------------------------------------------
Confidence 0 00000000
Q ss_pred cccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCcccCceEeCCCceEeccCCCCC
Q 004101 464 VLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILKPDVIAPGVNIIAAWPQNLG 543 (773)
Q Consensus 464 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~ 543 (773)
+-......+|||||+. ||-+-..|+|||+.|.+.-....
T Consensus 449 --------------------------------------~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~~tl- 487 (1304)
T KOG1114|consen 449 --------------------------------------PVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQYTL- 487 (1304)
T ss_pred --------------------------------------cCCCCccccccCCCCc--CCCcceEEecCCccccCCchhhh-
Confidence 1122578899999999 89999999999999876433222
Q ss_pred CCCCCCCCcccceEEeccccchhhhhHHHHHHHHH----hCCCCCHHHHHHHHHhccccCCCCCCcccCCCCCcccccCC
Q 004101 544 PSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRS----AYPKWSPAAIKSAIMTTADGNDHFGKPIMDGNKPPAVKAIN 619 (773)
Q Consensus 544 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~a~~~a~~ 619 (773)
..-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||++++.- . .-+++
T Consensus 488 ----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i-d----------~faqG 546 (1304)
T KOG1114|consen 488 ----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI-D----------SFAQG 546 (1304)
T ss_pred ----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc-c----------hhccC
Confidence 4667999999999999999999764 467899999999999999998754 1 23567
Q ss_pred CCccccCCcccccc
Q 004101 620 PGLIYDITPDEYVT 633 (773)
Q Consensus 620 ~Glv~~~~~~dy~~ 633 (773)
.|+++-..+-+|+.
T Consensus 547 ~GmlqVdkAyEyL~ 560 (1304)
T KOG1114|consen 547 QGMLQVDKAYEYLA 560 (1304)
T ss_pred cceeehhHHHHHHH
Confidence 88888888888864
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.5e-23 Score=240.59 Aligned_cols=250 Identities=35% Similarity=0.498 Sum_probs=184.3
Q ss_pred CCCCccc--CCCCCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCC
Q 004101 139 NGGAWYE--SQFGHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTM 216 (773)
Q Consensus 139 ~~~~~~~--~~~G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~ 216 (773)
....|.. +.+|+|++|+|||+||+..||+|.+.... .++|.+...
T Consensus 129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~---------------------------~~~~~~~~~------ 175 (508)
T COG1404 129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA---------------------------GGDFVDGDP------ 175 (508)
T ss_pred cccccccccCCCCCCeEEEEeccCCCCCChhhhccccc---------------------------ccccccCCC------
Confidence 4457777 89999999999999999999999853110 012222210
Q ss_pred CCCcccccC-CCCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCC-C-CCHHHHHHHHHHhhh
Q 004101 217 SPNIIQEYV-SPRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFN-G-CYSSDILAAMDVAIR 293 (773)
Q Consensus 217 ~~~~~~~~~-~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~~i~~ai~~A~~ 293 (773)
. ...|..+|||||+|++++.... ......|+||+++++.+|++... + ...++++++|+++++
T Consensus 176 --------~~~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 240 (508)
T COG1404 176 --------EPPFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAAN 240 (508)
T ss_pred --------CCCCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHh
Confidence 1 2568899999999999984211 11224799999999999999876 5 677788999999999
Q ss_pred CC--CcEEEeccCCCCCCCcccHHHHHHHHHHhCC-CEEEEeCCCCCCCCC----ccccCC--CceEEEcCcCCCcccee
Q 004101 294 DG--VDVLSLSLGGFPLPLFDDSIAIGSFRAMEHG-ISVVCAAGNNGPLQS----SVANIA--PWIATVGASTLDRRFPA 364 (773)
Q Consensus 294 ~g--~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~----~~~~~~--p~vitVgA~~~~~~~~~ 364 (773)
.+ ++|||||+|..........+..+...++..| +++|+|+||.+.... .++... +.+++|||.+.
T Consensus 241 ~~~~~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~------ 314 (508)
T COG1404 241 LGGPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL------ 314 (508)
T ss_pred cCCCCcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC------
Confidence 99 9999999998511122334445555776666 999999999987652 122221 24455554221
Q ss_pred EEEeCCCeEEeeeeccCCCCCCCCCceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCce
Q 004101 365 IVRMADGGLLYGESMYPGNQFSKTEKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGA 444 (773)
Q Consensus 365 ~~~~~~g~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~ 444 (773)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccCCCCcccccccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCCCCCCccc
Q 004101 445 AMILANTEINLEEDSVDVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSLYTPTILK 524 (773)
Q Consensus 445 g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~K 524 (773)
.+.++.||++|+.. +
T Consensus 315 -----------------------------------------------------------~~~~~~~s~~g~~~------~ 329 (508)
T COG1404 315 -----------------------------------------------------------SDTVASFSNDGSPT------G 329 (508)
T ss_pred -----------------------------------------------------------CCccccccccCCCC------C
Confidence 12678899999752 2
Q ss_pred CceEeCCCceEe-----ccCCCCCCCCCCCCCcccceEEeccccchhhhhHHHHHHHHHhCC-CCCHHHHHHHHHhcccc
Q 004101 525 PDVIAPGVNIIA-----AWPQNLGPSSLPEDNRRVNFTVMSGTSMACPHVSGITALIRSAYP-KWSPAAIKSAIMTTADG 598 (773)
Q Consensus 525 PDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~~s~~~ik~~L~~TA~~ 598 (773)
.+++|||.+|.+ .+++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++..
T Consensus 330 ~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 330 VDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred cceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc
Confidence 399999999988 444320 2499999999999999999999999999 89999999998888874
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.4e-20 Score=190.17 Aligned_cols=155 Identities=19% Similarity=0.227 Sum_probs=100.2
Q ss_pred CCCCcccCCCCCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCC
Q 004101 139 NGGAWYESQFGHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSP 218 (773)
Q Consensus 139 ~~~~~~~~~~G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 218 (773)
..++|.++++|++|.++|.|.||||.|||++.+ ..--..++|..+
T Consensus 150 v~~awa~g~tgknvttaimddgvdymhpdlk~n-------------------------ynaeasydfssn---------- 194 (629)
T KOG3526|consen 150 VAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN-------------------------YNAEASYDFSSN---------- 194 (629)
T ss_pred HHHHHhhcccCCCceEEeecCCchhcCcchhcc-------------------------cCceeecccccC----------
Confidence 456999999999999999999999999999821 112233444332
Q ss_pred CcccccCCCCC--CCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCCCCHHHHHHHHHHhhh-CC
Q 004101 219 NIIQEYVSPRD--STGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNGCYSSDILAAMDVAIR-DG 295 (773)
Q Consensus 219 ~~~~~~~~~~d--~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~-~g 295 (773)
++.++....| .+.|||.|||-+++...+ +.+| .|||.+.++..+|+++. -+..|+++|-....+ ..
T Consensus 195 -dpfpyprytddwfnshgtrcagev~aardn--gicg------vgvaydskvagirmldq--pymtdlieansmghep~k 263 (629)
T KOG3526|consen 195 -DPFPYPRYTDDWFNSHGTRCAGEVVAARDN--GICG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSK 263 (629)
T ss_pred -CCCCCCcccchhhhccCccccceeeeeccC--Ccee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCce
Confidence 2222222223 578999999988776533 3445 49999999999999875 455666655333222 24
Q ss_pred CcEEEeccCCCCCC-Ccc---cHHHHHHHHHHh-----CCCEEEEeCCCCCCC
Q 004101 296 VDVLSLSLGGFPLP-LFD---DSIAIGSFRAME-----HGISVVCAAGNNGPL 339 (773)
Q Consensus 296 ~dVIn~SlG~~~~~-~~~---~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~ 339 (773)
++|.+-|||..... ..+ ++.-.++.+-++ .|-++|.|.|..|.+
T Consensus 264 ihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 264 IHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred EEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 78999999976322 111 222222222222 456788888877643
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.73 E-value=2.4e-17 Score=180.96 Aligned_cols=101 Identities=28% Similarity=0.353 Sum_probs=81.1
Q ss_pred cccccccCCeEeEEeeecCCCCCHHHHHHHHHHhhhC---CCcEEEeccCCCCCC---CcccHHHHHHHHHHhCCCEEEE
Q 004101 258 VARGMAPGAHIAVYKVCWFNGCYSSDILAAMDVAIRD---GVDVLSLSLGGFPLP---LFDDSIAIGSFRAMEHGISVVC 331 (773)
Q Consensus 258 ~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~---g~dVIn~SlG~~~~~---~~~~~~~~a~~~a~~~Gi~vV~ 331 (773)
.+.||||+|+|+.|+++++. ..+++.++.+++.+ +++|||+|||..... .+.+.+..+..+|..+||.||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 35899999999999997643 35577888888887 999999999987532 2335667777788999999999
Q ss_pred eCCCCCCCCC-----------ccccCCCceEEEcCcCCCcc
Q 004101 332 AAGNNGPLQS-----------SVANIAPWIATVGASTLDRR 361 (773)
Q Consensus 332 AAGN~G~~~~-----------~~~~~~p~vitVgA~~~~~~ 361 (773)
|+||+|.... .++..+|||++||+++....
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 9999997653 35678999999999876654
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.26 E-value=4.4e-11 Score=113.69 Aligned_cols=117 Identities=23% Similarity=0.335 Sum_probs=92.8
Q ss_pred CceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCcccccc-cccccE
Q 004101 389 EKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDSVD-VHVLPA 467 (773)
Q Consensus 389 ~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~-~~~~p~ 467 (773)
....+++|. ..|...++...+++|||+||+|+.|.+.+|..+++.+||.|+|++++.......... ...+|.
T Consensus 25 ~~~~~lv~~-------g~g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~ 97 (143)
T cd02133 25 GKTYELVDA-------GLGTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPV 97 (143)
T ss_pred CcEEEEEEc-------cCCchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeE
Confidence 467888882 234455566778999999999999999999999999999999999887532221111 246899
Q ss_pred EEEehhhHHHHHHHHhcCCCcEEEEEecceeecccCCCccccccCCCCCC
Q 004101 468 TLVGFAESVRLKVYINSTRRARARIIFGGTVIGRSRAPAVAQFSARGPSL 517 (773)
Q Consensus 468 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~GP~~ 517 (773)
+.|+.++|+.|.+|+++ +++|.+..+.. ..+++.++.||||||+-
T Consensus 98 v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 98 VFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred EEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 99999999999999988 66777766655 56778899999999963
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.17 E-value=2.9e-10 Score=105.69 Aligned_cols=121 Identities=45% Similarity=0.748 Sum_probs=95.5
Q ss_pred EEeCCCeEEeeeeccCCCCCCCCCceeEEEEec--CCCCCCCcccCCCCCCCcccceEEEEecCCC-chhhHHHHHHHcC
Q 004101 366 VRMADGGLLYGESMYPGNQFSKTEKELDLIYVT--GGDGGSEFCLKGSLPIAEVRGKMVVCDRGVN-GRAEKGQVVKEAG 442 (773)
Q Consensus 366 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~lv~~~--~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~-~~~~~~~~~~~~G 442 (773)
++|+||+.+.|++++++.. ..+++++.. ........|.+..++..+++|||++|+|+.+ .+.+|..+++++|
T Consensus 2 i~LGng~~i~G~sl~~~~~-----~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~G 76 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL-----KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAG 76 (126)
T ss_pred EEeCCCCEEEEEEccCCCC-----CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcC
Confidence 6789999999999997542 235565511 1112236798888888999999999999999 8999999999999
Q ss_pred ceEEEEeccCCCCcccccccccccEEEEehhhHHHHHHHHhcCCCcEEE
Q 004101 443 GAAMILANTEINLEEDSVDVHVLPATLVGFAESVRLKVYINSTRRARAR 491 (773)
Q Consensus 443 a~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 491 (773)
|.|+|++++.............+|.+.|+.++|+.|++|++++.+++++
T Consensus 77 A~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 77 GAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred CcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999999887543333333467999999999999999999988776554
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.91 E-value=2.6e-09 Score=91.19 Aligned_cols=82 Identities=32% Similarity=0.609 Sum_probs=58.8
Q ss_pred eEEEEeCCCCCCCccccchHHHHHHHhhhcccCCCCCCcceEEEecceeeEEEEEcCHHHHHHHhCCCCeEEEEeCcccc
Q 004101 44 TYVVQLHPHGVISSLFTSKLHWHLSFIEQTLSSEEDPASRLLYSYHFAMEGFAAQLTRSELESLQKLPDVIAIRPDRRLQ 123 (773)
Q Consensus 44 ~yIV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~ngfs~~l~~~~~~~L~~~p~V~~V~~~~~~~ 123 (773)
+|||+|++..........+.+++.+++.+..........++.+.|...||||+++++++++++|+++|+|++|+||+.++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 69999999865443355677777765543210001457899999999999999999999999999999999999999887
Q ss_pred cc
Q 004101 124 VQ 125 (773)
Q Consensus 124 ~~ 125 (773)
++
T Consensus 81 l~ 82 (82)
T PF05922_consen 81 LH 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 64
No 47
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.85 E-value=2.9e-08 Score=90.17 Aligned_cols=87 Identities=15% Similarity=0.223 Sum_probs=60.9
Q ss_pred cceEEEEEEEEecCCCCeeEEEEEEC--------CCC----------c-EEEEecCeeEEecCCcEEEEEEEEEeecccC
Q 004101 680 KKSTMIRRRLTNVGSPNSIYSVKVTA--------PED----------V-EVRIKPQRLIFKYVNQSLIYRIWIISRKRMT 740 (773)
Q Consensus 680 ~~~~~~~rtvtn~g~~~~~y~~~~~~--------~~g----------~-~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~ 740 (773)
+...+++++|+|.|+.+.+|++++.. ..| . .+...|.+|+++ +|++++++|+|+++....
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~-ag~s~~v~vti~~p~~~~ 85 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVP-AGQSKTVTVTITPPSGLD 85 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGH
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEEC-CCCEEEEEEEEEehhcCC
Confidence 34688999999999999999998761 111 1 688889999998 999999999999987543
Q ss_pred CCCCceEeEEEEEEEcCCCCccEEEeeEE
Q 004101 741 KDRMSFAQGQLAWVHSGNSSLYRVRSPIS 769 (773)
Q Consensus 741 ~~~~~~~~G~l~~~~~~~~~~~~v~~P~~ 769 (773)
..++.+++|+|.++. .++. ..+++||+
T Consensus 86 ~~~~~~~eG~I~~~~-~~~~-~~lsIPy~ 112 (112)
T PF06280_consen 86 ASNGPFYEGFITFKS-SDGE-PDLSIPYM 112 (112)
T ss_dssp HTT-EEEEEEEEEES-STTS-EEEEEEEE
T ss_pred cccCCEEEEEEEEEc-CCCC-EEEEeeeC
Confidence 334589999999993 3333 49999985
No 48
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.75 E-value=6.9e-08 Score=89.13 Aligned_cols=99 Identities=18% Similarity=0.161 Sum_probs=78.2
Q ss_pred ceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCccc----c-ccccc
Q 004101 390 KELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEED----S-VDVHV 464 (773)
Q Consensus 390 ~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~----~-~~~~~ 464 (773)
..-++++ ......+.|.+..+...+++|||+||.|+.|.+.+|..+++++||.++|++|+....... . .....
T Consensus 17 i~~~lv~--~~~~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~ 94 (122)
T cd04816 17 VTAPLVP--LDPERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLK 94 (122)
T ss_pred cEEEEEE--cCCCCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCe
Confidence 3456777 333334789988888889999999999999999999999999999999999876532111 1 13456
Q ss_pred ccEEEEehhhHHHHHHHHhcCCCcEE
Q 004101 465 LPATLVGFAESVRLKVYINSTRRARA 490 (773)
Q Consensus 465 ~p~~~i~~~~g~~l~~~~~~~~~~~~ 490 (773)
+|.+.|+.++|+.|++++..+.+.++
T Consensus 95 iP~~~Is~~~G~~l~~~l~~g~~v~~ 120 (122)
T cd04816 95 VPVGVITKAAGAALRRRLGAGETLEL 120 (122)
T ss_pred eeEEEEcHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999988765443
No 49
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.62 E-value=2.2e-07 Score=84.74 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=71.5
Q ss_pred CcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCC-cccc-------cccccccEEEEehhhHH
Q 004101 405 EFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINL-EEDS-------VDVHVLPATLVGFAESV 476 (773)
Q Consensus 405 ~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~-~~~~-------~~~~~~p~~~i~~~~g~ 476 (773)
+.|.+.. +..+++|+|+|++||.|.|.+|..+++++||.++|++|+.... .... .....+|.++|...+|+
T Consensus 22 ~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG~ 100 (118)
T cd02127 22 EACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNGY 100 (118)
T ss_pred ccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHHH
Confidence 6798644 3567999999999999999999999999999999999976532 1111 23357999999999999
Q ss_pred HHHHHHhcCCCcEEEEE
Q 004101 477 RLKVYINSTRRARARII 493 (773)
Q Consensus 477 ~l~~~~~~~~~~~~~i~ 493 (773)
.|++.+..+..+++.|.
T Consensus 101 ~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 101 MIRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHHcCCceEEeee
Confidence 99999999888766553
No 50
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.62 E-value=1.9e-07 Score=87.64 Aligned_cols=87 Identities=10% Similarity=0.014 Sum_probs=72.3
Q ss_pred CcccCCCC--CCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCc-cc---ccccccccEEEEehhhHHHH
Q 004101 405 EFCLKGSL--PIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLE-ED---SVDVHVLPATLVGFAESVRL 478 (773)
Q Consensus 405 ~~c~~~~~--~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~-~~---~~~~~~~p~~~i~~~~g~~l 478 (773)
+.|.+... ++.++.|+|+|+.||.|.|.+|..+++.+||.++|++|+...+. .. ......+|.++|+..+|+.|
T Consensus 45 ~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~l 124 (138)
T cd02122 45 YGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGMEI 124 (138)
T ss_pred CCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHHH
Confidence 67988776 56789999999999999999999999999999999999876221 11 12234689999999999999
Q ss_pred HHHHhcCCCcEEE
Q 004101 479 KVYINSTRRARAR 491 (773)
Q Consensus 479 ~~~~~~~~~~~~~ 491 (773)
++++..+.+.+++
T Consensus 125 ~~~l~~G~~Vtv~ 137 (138)
T cd02122 125 LELLERGISVTMV 137 (138)
T ss_pred HHHHHcCCcEEEe
Confidence 9999988776554
No 51
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.57 E-value=2.6e-07 Score=83.83 Aligned_cols=91 Identities=20% Similarity=0.344 Sum_probs=73.0
Q ss_pred ceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCc----ccccccccc
Q 004101 390 KELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLE----EDSVDVHVL 465 (773)
Q Consensus 390 ~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~----~~~~~~~~~ 465 (773)
..+|++.++. ...|.+..+...+++|+|+|++||.|.|.+|..+++.+||.++|++|+..... ........+
T Consensus 20 ~~~~~~~~~~----~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~I 95 (120)
T cd02129 20 TLLPLRNLTS----SVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDI 95 (120)
T ss_pred cceeeecCCC----cCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcc
Confidence 3566666322 26799888888899999999999999999999999999999999999875211 111244678
Q ss_pred cEEEEehhhHHHHHHHHhc
Q 004101 466 PATLVGFAESVRLKVYINS 484 (773)
Q Consensus 466 p~~~i~~~~g~~l~~~~~~ 484 (773)
|+++|+.++|+.|.+.+..
T Consensus 96 P~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 96 PVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred cEEEEeHHHHHHHHHHhcc
Confidence 9999999999999988863
No 52
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.56 E-value=3.4e-07 Score=84.06 Aligned_cols=86 Identities=22% Similarity=0.220 Sum_probs=69.9
Q ss_pred CcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCcccc----cccccccEEEEehhhHHHHHH
Q 004101 405 EFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDS----VDVHVLPATLVGFAESVRLKV 480 (773)
Q Consensus 405 ~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~~l~~ 480 (773)
+.|.+.... .+++|||+||.|+.|.+.+|..+++++||.|+|++++........ .....+|.+.|+.++|+.|++
T Consensus 28 ~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~~ 106 (118)
T cd04818 28 DGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALKA 106 (118)
T ss_pred cccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHHH
Confidence 679887764 459999999999999999999999999999999998876421111 123579999999999999999
Q ss_pred HHhcCCCcEEE
Q 004101 481 YINSTRRARAR 491 (773)
Q Consensus 481 ~~~~~~~~~~~ 491 (773)
|++.+...+++
T Consensus 107 ~l~~g~~v~v~ 117 (118)
T cd04818 107 ALAAGGTVTVT 117 (118)
T ss_pred HHhcCCcEEEe
Confidence 99987755443
No 53
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.56 E-value=1.1e-07 Score=84.50 Aligned_cols=92 Identities=21% Similarity=0.345 Sum_probs=69.2
Q ss_pred ceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCC----CCcccccccccc
Q 004101 390 KELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEI----NLEEDSVDVHVL 465 (773)
Q Consensus 390 ~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~----~~~~~~~~~~~~ 465 (773)
...||++. ........|.+..+...+++|||+||.||.|.+.+|..+++++||.|+|+++... ...........+
T Consensus 6 ~~~~lV~~-~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~i 84 (101)
T PF02225_consen 6 VTGPLVPA-GNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDI 84 (101)
T ss_dssp EEEEEEEE-TTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBS
T ss_pred EEEEEEEe-cCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEE
Confidence 45666631 2222235677788889999999999999999999999999999999999999211 111223446789
Q ss_pred cEEEEehhhHHHHHHHH
Q 004101 466 PATLVGFAESVRLKVYI 482 (773)
Q Consensus 466 p~~~i~~~~g~~l~~~~ 482 (773)
|+++|+.++|+.|++|+
T Consensus 85 P~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 85 PVVFISYEDGEALLAYI 101 (101)
T ss_dssp EEEEE-HHHHHHHHHHH
T ss_pred EEEEeCHHHHhhhhccC
Confidence 99999999999999985
No 54
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.50 E-value=5.9e-07 Score=82.95 Aligned_cols=96 Identities=19% Similarity=0.152 Sum_probs=74.4
Q ss_pred ceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCcc----cccccccc
Q 004101 390 KELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEE----DSVDVHVL 465 (773)
Q Consensus 390 ~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~----~~~~~~~~ 465 (773)
..-++++. +...|.+..+ +.+++|||+|++|+.|.|.+|..+++++||.++|++|+...+.. ...+...+
T Consensus 22 ~~g~lv~~-----~~~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~I 95 (122)
T cd02130 22 VTGPLVVV-----PNLGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYV 95 (122)
T ss_pred cEEEEEEe-----CCCCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEe
Confidence 34556662 1346876555 35799999999999999999999999999999999998732211 12234679
Q ss_pred cEEEEehhhHHHHHHHHhcCCCcEEE
Q 004101 466 PATLVGFAESVRLKVYINSTRRARAR 491 (773)
Q Consensus 466 p~~~i~~~~g~~l~~~~~~~~~~~~~ 491 (773)
|.+.|+.++|+.|++.++++.+.+++
T Consensus 96 p~v~Is~~~G~~L~~~l~~g~~v~~~ 121 (122)
T cd02130 96 PTVGISQEDGKALVAALANGGEVSAN 121 (122)
T ss_pred eEEEecHHHHHHHHHHHhcCCcEEEe
Confidence 99999999999999999988776543
No 55
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.50 E-value=6e-07 Score=83.13 Aligned_cols=85 Identities=21% Similarity=0.253 Sum_probs=68.1
Q ss_pred CcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCc-----cc----c---cccccccEEEEeh
Q 004101 405 EFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLE-----ED----S---VDVHVLPATLVGF 472 (773)
Q Consensus 405 ~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~-----~~----~---~~~~~~p~~~i~~ 472 (773)
+.|.+... +.+++|||+|++||.|.|.+|..+++++||.++|++|+..... .. . .+...+|+++|+.
T Consensus 28 ~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~~ 106 (126)
T cd02126 28 RACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLFS 106 (126)
T ss_pred hcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEEH
Confidence 67976554 5578999999999999999999999999999999998754310 10 1 1245799999999
Q ss_pred hhHHHHHHHHhcCCCcEE
Q 004101 473 AESVRLKVYINSTRRARA 490 (773)
Q Consensus 473 ~~g~~l~~~~~~~~~~~~ 490 (773)
.+|+.|++.+..+...++
T Consensus 107 ~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 107 KEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHhCCceEE
Confidence 999999999988765443
No 56
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.46 E-value=7.5e-07 Score=82.57 Aligned_cols=86 Identities=23% Similarity=0.292 Sum_probs=70.3
Q ss_pred CcccCCC--CCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCccc--c----cccccccEEEEehhhHH
Q 004101 405 EFCLKGS--LPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEED--S----VDVHVLPATLVGFAESV 476 (773)
Q Consensus 405 ~~c~~~~--~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~--~----~~~~~~p~~~i~~~~g~ 476 (773)
..|.+.. +...+++|||+||.|+.|.+.+|..+++.+||.|+|++++....... . .....+|.+.|+.++|+
T Consensus 31 ~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g~ 110 (126)
T cd00538 31 VGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGE 110 (126)
T ss_pred EEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHHH
Confidence 3488777 67788999999999999999999999999999999999987532111 1 13457999999999999
Q ss_pred HHHHHHhcCCCcEE
Q 004101 477 RLKVYINSTRRARA 490 (773)
Q Consensus 477 ~l~~~~~~~~~~~~ 490 (773)
.|.+++.++.+.++
T Consensus 111 ~l~~~~~~~~~v~~ 124 (126)
T cd00538 111 ALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHhcCCceEE
Confidence 99999988665443
No 57
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.45 E-value=3e-06 Score=78.61 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=72.0
Q ss_pred eEEEEecCCC-CCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCccc-ccccccccEEE
Q 004101 392 LDLIYVTGGD-GGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEED-SVDVHVLPATL 469 (773)
Q Consensus 392 ~~lv~~~~~~-~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~-~~~~~~~p~~~ 469 (773)
+|++..+-.. ...+.|.+...+..+++|+|+|++||.|.|.+|..+++++||.++|++|+....... ..+...+|.+.
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~ 107 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAV 107 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEE
Confidence 6666533222 223789877666668999999999999999999999999999999999887532211 12233456565
Q ss_pred EehhhHHHHHHHHhcCCCcEE
Q 004101 470 VGFAESVRLKVYINSTRRARA 490 (773)
Q Consensus 470 i~~~~g~~l~~~~~~~~~~~~ 490 (773)
+ .++|+.|++.++.+...++
T Consensus 108 ~-~~~G~~l~~~l~~G~~vtv 127 (129)
T cd02124 108 T-PEDGEAWIDALAAGSNVTV 127 (129)
T ss_pred e-HHHHHHHHHHHhcCCeEEE
Confidence 5 9999999999987765443
No 58
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.45 E-value=1.2e-06 Score=81.90 Aligned_cols=75 Identities=21% Similarity=0.237 Sum_probs=61.3
Q ss_pred CCCCCcccceEEEEecCCCc-----hhhHHHHHHHcCceEEEEeccCCC-Ccc--ccc---ccccccEEEEehhhHHHHH
Q 004101 411 SLPIAEVRGKMVVCDRGVNG-----RAEKGQVVKEAGGAAMILANTEIN-LEE--DSV---DVHVLPATLVGFAESVRLK 479 (773)
Q Consensus 411 ~~~~~~~~gkivl~~~g~~~-----~~~~~~~~~~~Ga~g~i~~~~~~~-~~~--~~~---~~~~~p~~~i~~~~g~~l~ 479 (773)
++.+.+++|||+|++||.|. |.+|..+++++||.++|+||+... +.. ... ....+|++.|+.++|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 45566899999999999999 999999999999999999999732 211 111 1468999999999999999
Q ss_pred HHHhcC
Q 004101 480 VYINST 485 (773)
Q Consensus 480 ~~~~~~ 485 (773)
+.+...
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 988543
No 59
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.39 E-value=1.5e-06 Score=80.29 Aligned_cols=87 Identities=20% Similarity=0.137 Sum_probs=68.0
Q ss_pred CcccCCCCC--CC----cccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCccc-----------ccccccccE
Q 004101 405 EFCLKGSLP--IA----EVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEED-----------SVDVHVLPA 467 (773)
Q Consensus 405 ~~c~~~~~~--~~----~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~-----------~~~~~~~p~ 467 (773)
+.|.+.... +. ...++|+|++||.|.|.+|..+++++||.++|++|+....... ..+...+|+
T Consensus 23 ~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP~ 102 (127)
T cd02125 23 TGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIPS 102 (127)
T ss_pred ccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEeE
Confidence 568765543 22 3778999999999999999999999999999999986532110 112346999
Q ss_pred EEEehhhHHHHHHHHhcCCCcEEE
Q 004101 468 TLVGFAESVRLKVYINSTRRARAR 491 (773)
Q Consensus 468 ~~i~~~~g~~l~~~~~~~~~~~~~ 491 (773)
++|+.++|+.|++.+..+...+++
T Consensus 103 v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 103 ALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEECHHHHHHHHHHHhcCCeEEEe
Confidence 999999999999999988765543
No 60
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.38 E-value=1.7e-06 Score=81.60 Aligned_cols=83 Identities=14% Similarity=0.327 Sum_probs=67.4
Q ss_pred CcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCcccc------cccccccEEEEehhhHHHH
Q 004101 405 EFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDS------VDVHVLPATLVGFAESVRL 478 (773)
Q Consensus 405 ~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~------~~~~~~p~~~i~~~~g~~l 478 (773)
+.|.+.. .+++|+|+|++||.|.|.+|..+++++||.++|++|+........ .....+|++.|+..+|+.|
T Consensus 49 ~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L 125 (139)
T cd02132 49 DCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDAL 125 (139)
T ss_pred cccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHHH
Confidence 6798754 378999999999999999999999999999999998764311111 1135799999999999999
Q ss_pred HHHHhcCCCcEE
Q 004101 479 KVYINSTRRARA 490 (773)
Q Consensus 479 ~~~~~~~~~~~~ 490 (773)
++.+..+...++
T Consensus 126 ~~~l~~g~~Vtv 137 (139)
T cd02132 126 NKSLDQGKKVEV 137 (139)
T ss_pred HHHHHcCCcEEE
Confidence 999988876543
No 61
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=6.2e-06 Score=98.67 Aligned_cols=94 Identities=22% Similarity=0.312 Sum_probs=58.1
Q ss_pred ccccccCCeEeEEeeecCCCCCHHHHHHHHHHhhhCC-CcEEEeccCCCC-----CCCcccHHHHHHHHHHhCCCEEEEe
Q 004101 259 ARGMAPGAHIAVYKVCWFNGCYSSDILAAMDVAIRDG-VDVLSLSLGGFP-----LPLFDDSIAIGSFRAMEHGISVVCA 332 (773)
Q Consensus 259 ~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~g-~dVIn~SlG~~~-----~~~~~~~~~~a~~~a~~~Gi~vV~A 332 (773)
.+-+||+|+|..|-. +.+ ....+..|+.+-...= --+|-.||+... .+...+.++.....|..+|+.+++|
T Consensus 288 s~A~AP~A~I~lvva--p~~-~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~AA 364 (1174)
T COG4934 288 SHAMAPKANIDLVVA--PNP-LVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFAA 364 (1174)
T ss_pred hhccCccCceEEEEc--CCC-ceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEEe
Confidence 368999999998866 212 1122222332222211 133445666431 2223455555566788999999999
Q ss_pred CCCCCCCCCc--------cccCCCceEEEcC
Q 004101 333 AGNNGPLQSS--------VANIAPWIATVGA 355 (773)
Q Consensus 333 AGN~G~~~~~--------~~~~~p~vitVgA 355 (773)
+|.+|....+ .+..+|++++||.
T Consensus 365 SGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 365 SGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred cccccccCCCcccceeecccCCCccEEeecC
Confidence 9999876643 4567899999996
No 62
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.30 E-value=2.6e-06 Score=77.59 Aligned_cols=78 Identities=22% Similarity=0.241 Sum_probs=64.0
Q ss_pred CcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCC-cc-----cccccccccEEEEehhhHHHH
Q 004101 405 EFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINL-EE-----DSVDVHVLPATLVGFAESVRL 478 (773)
Q Consensus 405 ~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~-~~-----~~~~~~~~p~~~i~~~~g~~l 478 (773)
+.|.+. +..+++|||+|+.||.|.|.+|..+++++||.++|++|+.... .. .......+|++.+..++++.|
T Consensus 28 ~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~~L 105 (117)
T cd04813 28 DACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYHLL 105 (117)
T ss_pred CCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHHHH
Confidence 679765 5678999999999999999999999999999999999876532 11 112345799999999999999
Q ss_pred HHHHhc
Q 004101 479 KVYINS 484 (773)
Q Consensus 479 ~~~~~~ 484 (773)
..++..
T Consensus 106 ~~l~~~ 111 (117)
T cd04813 106 SSLLPK 111 (117)
T ss_pred HHhccc
Confidence 987753
No 63
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.24 E-value=4.9e-06 Score=79.77 Aligned_cols=83 Identities=23% Similarity=0.169 Sum_probs=68.6
Q ss_pred CcccCCCCCC---CcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCcccc----c--ccccccEEEEehhhH
Q 004101 405 EFCLKGSLPI---AEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDS----V--DVHVLPATLVGFAES 475 (773)
Q Consensus 405 ~~c~~~~~~~---~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~----~--~~~~~p~~~i~~~~g 475 (773)
++|.+....+ ....|+|+|++||.|.|.+|..+++++||.++|++|+........ . ....+|+++|+..+|
T Consensus 51 ~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~dg 130 (153)
T cd02123 51 NACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKSTG 130 (153)
T ss_pred ccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHHH
Confidence 6798766644 789999999999999999999999999999999999865322111 1 245899999999999
Q ss_pred HHHHHHHhcCCC
Q 004101 476 VRLKVYINSTRR 487 (773)
Q Consensus 476 ~~l~~~~~~~~~ 487 (773)
+.|+.++.....
T Consensus 131 ~~L~~~l~~~~~ 142 (153)
T cd02123 131 EILKKYASYEKG 142 (153)
T ss_pred HHHHHHHhcCCc
Confidence 999999987754
No 64
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=9.9e-06 Score=90.24 Aligned_cols=157 Identities=19% Similarity=0.176 Sum_probs=97.3
Q ss_pred CCCCcccCCCCCccEEEEEccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCceeeeeecCCcccccCCCCCC
Q 004101 139 NGGAWYESQFGHGSIIGVLDTGIWPESPSFDDHGMPPVPKKWRGVCQEGQSFNSSNCNRKLIGARFFTKGHRVASTTMSP 218 (773)
Q Consensus 139 ~~~~~~~~~~G~gv~VaVIDTGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 218 (773)
....|..+++|.++.|+|.|+|+...||+.... ....+.+++....
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~~--------- 67 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRHD--------- 67 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeecCC---------
Confidence 466999999999999999999999999999732 1222333333222
Q ss_pred CcccccCCCCCCCCCccchhhhhccccccccccccCCCccccccccCCeEeEEeeecCCCCCHHHHHHHHHHhhh-CCCc
Q 004101 219 NIIQEYVSPRDSTGHGTHTSSTAAGTSVSMASVLGNAGGVARGMAPGAHIAVYKVCWFNGCYSSDILAAMDVAIR-DGVD 297 (773)
Q Consensus 219 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~-~g~d 297 (773)
+.+.+-.+......|||-||+-.+....+. . =..|+++++++..++++... .++...+...... .-++
T Consensus 68 ~~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~--~------C~vg~~~~~~~~g~~~l~~~---v~~~~~~~~~~~~~~~~d 136 (431)
T KOG3525|consen 68 NDPEPRCDGTNENKHGTRCAGCVAARANNL--T------CGVGVAYNATIGGIRMLAGC---VSDAVEAPSLGFGPCHID 136 (431)
T ss_pred CCcccccCCCCccccCCCCCcccccccCCC--c------CCCCcccCccccceeeeeee---cccceecccccCCCCCce
Confidence 112222233346889999999998875111 1 12699999999999997631 1122222222222 2478
Q ss_pred EEEeccCCCCCC----CcccHHHHHHHH-----HHhCCCEEEEeCCCCCCCC
Q 004101 298 VLSLSLGGFPLP----LFDDSIAIGSFR-----AMEHGISVVCAAGNNGPLQ 340 (773)
Q Consensus 298 VIn~SlG~~~~~----~~~~~~~~a~~~-----a~~~Gi~vV~AAGN~G~~~ 340 (773)
+-+.|||-.... ........+... ...+|-+.|+|-||.|...
T Consensus 137 i~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 137 IYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred eecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 999999976311 111111222222 2357889999999987543
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.89 E-value=0.00011 Score=68.21 Aligned_cols=92 Identities=23% Similarity=0.226 Sum_probs=69.3
Q ss_pred CceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCC--chhhHHHHHHHcCceEEEEeccCCCCccc-----c--
Q 004101 389 EKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVN--GRAEKGQVVKEAGGAAMILANTEINLEED-----S-- 459 (773)
Q Consensus 389 ~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~--~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~-----~-- 459 (773)
....++++. +. +.+.++...+++|||+++.++.+ .+.+|..++++.||.|+|++|+....... .
T Consensus 22 ~~~~~lV~~--g~-----G~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~ 94 (127)
T cd04819 22 EAKGEPVDA--GY-----GLPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTED 94 (127)
T ss_pred CeeEEEEEe--CC-----CCHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccC
Confidence 456788882 21 22223445679999999999999 88999999999999999999865432211 1
Q ss_pred cccccccEEEEehhhHHHHHHHHhcCCC
Q 004101 460 VDVHVLPATLVGFAESVRLKVYINSTRR 487 (773)
Q Consensus 460 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 487 (773)
.....+|++.|+.+||+.|.+.++.+..
T Consensus 95 ~~~~~IP~v~Is~edg~~L~~~l~~g~~ 122 (127)
T cd04819 95 GPPSPIPAASVSGEDGLRLARVAERNDT 122 (127)
T ss_pred CCCCCCCEEEEeHHHHHHHHHHHhcCCc
Confidence 1235799999999999999999987543
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.30 E-value=0.00089 Score=62.72 Aligned_cols=78 Identities=17% Similarity=0.248 Sum_probs=61.5
Q ss_pred CCCcccceEEEEecCCC------chhhH-------HHHHHHcCceEEEEeccCC-------CCcccc-cccccccEEEEe
Q 004101 413 PIAEVRGKMVVCDRGVN------GRAEK-------GQVVKEAGGAAMILANTEI-------NLEEDS-VDVHVLPATLVG 471 (773)
Q Consensus 413 ~~~~~~gkivl~~~g~~------~~~~~-------~~~~~~~Ga~g~i~~~~~~-------~~~~~~-~~~~~~p~~~i~ 471 (773)
+..+++|||+++.++.| .+..| ...++++||.++|+++... .|.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 45689999999999999 88887 6889999999999998532 221111 223469999999
Q ss_pred hhhHHHHHHHHhcCCCcEE
Q 004101 472 FAESVRLKVYINSTRRARA 490 (773)
Q Consensus 472 ~~~g~~l~~~~~~~~~~~~ 490 (773)
.+++..|...++.+...++
T Consensus 114 ~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 114 VEDADMLERLAARGKPIRV 132 (134)
T ss_pred hhcHHHHHHHHhCCCCeEE
Confidence 9999999999988765544
No 67
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=96.75 E-value=0.0055 Score=59.94 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=55.6
Q ss_pred CCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCC-cc-----------------c-------------cc--
Q 004101 414 IAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINL-EE-----------------D-------------SV-- 460 (773)
Q Consensus 414 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~-~~-----------------~-------------~~-- 460 (773)
..+++|||+|+.+|.|.+.+|..+++..||+|+|+|++.... .. . ..
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 457999999999999999999999999999999999884210 00 0 00
Q ss_pred -ccccccEEEEehhhHHHHHHHHh
Q 004101 461 -DVHVLPATLVGFAESVRLKVYIN 483 (773)
Q Consensus 461 -~~~~~p~~~i~~~~g~~l~~~~~ 483 (773)
.-..||++.|+..++..|++.+.
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~ 154 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMG 154 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcC
Confidence 11348899999999999999874
No 68
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.63 E-value=0.053 Score=48.02 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=62.0
Q ss_pred cceEEEEEEEEecCCCCeeEEEEEECCCCcEEEEecCeeEEecCCcEEEEEEEEEeecccCCCCCceEeEEEEEEEcCCC
Q 004101 680 KKSTMIRRRLTNVGSPNSIYSVKVTAPEDVEVRIKPQRLIFKYVNQSLIYRIWIISRKRMTKDRMSFAQGQLAWVHSGNS 759 (773)
Q Consensus 680 ~~~~~~~rtvtn~g~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~G~l~~~~~~~~ 759 (773)
+...+.+++|+|.|..+..|++.......-.++++|..-.+. +|++.+++|+|.+.+. . +.+.+.|..+. .+
T Consensus 19 g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~-PG~~~~~~V~~~~~~~--~---g~~~~~l~i~~--e~ 90 (102)
T PF14874_consen 19 GQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLA-PGESVELEVTFSPTKP--L---GDYEGSLVITT--EG 90 (102)
T ss_pred CCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEEC-CCCEEEEEEEEEeCCC--C---ceEEEEEEEEE--CC
Confidence 346788999999999999999976543345567777776676 8999999999996543 2 56889998873 33
Q ss_pred CccEEEeeEEEE
Q 004101 760 SLYRVRSPISVT 771 (773)
Q Consensus 760 ~~~~v~~P~~~~ 771 (773)
..+.+|+-+.
T Consensus 91 --~~~~i~v~a~ 100 (102)
T PF14874_consen 91 --GSFEIPVKAE 100 (102)
T ss_pred --eEEEEEEEEE
Confidence 4777887654
No 69
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.22 E-value=0.014 Score=54.87 Aligned_cols=64 Identities=19% Similarity=0.126 Sum_probs=51.0
Q ss_pred CceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCC------------------chhhHHHHHHHcCceEEEEec
Q 004101 389 EKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVN------------------GRAEKGQVVKEAGGAAMILAN 450 (773)
Q Consensus 389 ~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~------------------~~~~~~~~~~~~Ga~g~i~~~ 450 (773)
....++||..- ......|...++...+++||||++.++.| .+..|..++++.||.|+|+++
T Consensus 19 ~~~aelVfvGy-Gi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~ 97 (142)
T cd04814 19 IKDAPLVFVGY-GIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVH 97 (142)
T ss_pred ccceeeEEecC-CcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEe
Confidence 45678888421 22335688888888999999999999877 466799999999999999999
Q ss_pred cCC
Q 004101 451 TEI 453 (773)
Q Consensus 451 ~~~ 453 (773)
+..
T Consensus 98 ~~~ 100 (142)
T cd04814 98 ELA 100 (142)
T ss_pred CCC
Confidence 865
No 70
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.94 E-value=0.025 Score=52.86 Aligned_cols=64 Identities=25% Similarity=0.208 Sum_probs=50.3
Q ss_pred CceeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCc------------hhhHHHHHHHcCceEEEEeccCC
Q 004101 389 EKELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNG------------RAEKGQVVKEAGGAAMILANTEI 453 (773)
Q Consensus 389 ~~~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~------------~~~~~~~~~~~Ga~g~i~~~~~~ 453 (773)
...-++||..- ......|...++...+++|||||+.++.|. +..|..++...||.|+|++++..
T Consensus 21 ~v~gelVfvGy-G~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 21 SVEAPLVFVGY-GLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred CceEeEEEecC-CcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 34678888421 122356777788888999999999998863 66899999999999999999865
No 71
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.86 E-value=0.04 Score=46.27 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=39.0
Q ss_pred ceEEEEEEEEecCCCC-eeEEEEEECCCCcEEEEecCeeEEecCCcEEEEEEEEEeecccC
Q 004101 681 KSTMIRRRLTNVGSPN-SIYSVKVTAPEDVEVRIKPQRLIFKYVNQSLIYRIWIISRKRMT 740 (773)
Q Consensus 681 ~~~~~~rtvtn~g~~~-~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~ 740 (773)
+..+++++|+|.|..+ ...++++..|.|-++...|.++.--++|++++++++|+++....
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~ 65 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAA 65 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCC
Confidence 4688999999999766 45888999999999888888876445999999999999997643
No 72
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.64 E-value=0.039 Score=52.47 Aligned_cols=64 Identities=20% Similarity=0.193 Sum_probs=49.3
Q ss_pred CceeEEEEecCCC-CCCCcccCCCCCCCcccceEEEEecCC------------------CchhhHHHHHHHcCceEEEEe
Q 004101 389 EKELDLIYVTGGD-GGSEFCLKGSLPIAEVRGKMVVCDRGV------------------NGRAEKGQVVKEAGGAAMILA 449 (773)
Q Consensus 389 ~~~~~lv~~~~~~-~~~~~c~~~~~~~~~~~gkivl~~~g~------------------~~~~~~~~~~~~~Ga~g~i~~ 449 (773)
..+-++||. +. .....|....+...+++|||||+.++. |.+..|..++...|+.|+|++
T Consensus 19 ~vtg~lVfv--GyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~ 96 (151)
T cd04822 19 AVTAPVVFA--GYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVV 96 (151)
T ss_pred CceEeEEEe--cCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEE
Confidence 345678883 32 223567777777889999999998763 456789999999999999999
Q ss_pred ccCCC
Q 004101 450 NTEIN 454 (773)
Q Consensus 450 ~~~~~ 454 (773)
++...
T Consensus 97 ~d~~~ 101 (151)
T cd04822 97 NGPNS 101 (151)
T ss_pred eCCcc
Confidence 98653
No 73
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.61 E-value=0.045 Score=59.95 Aligned_cols=79 Identities=16% Similarity=0.321 Sum_probs=64.4
Q ss_pred CCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCC------CcccccccccccEEEEehhhHHHHHHHHhcCCC
Q 004101 414 IAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEIN------LEEDSVDVHVLPATLVGFAESVRLKVYINSTRR 487 (773)
Q Consensus 414 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 487 (773)
....++|++++.||.|.|.+|...++++||.++++.|+..+ ++........||...+..++++.+......+.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 45789999999999999999999999999999999999542 122233457799999999999999987777766
Q ss_pred cEEEE
Q 004101 488 ARARI 492 (773)
Q Consensus 488 ~~~~i 492 (773)
.++.+
T Consensus 171 V~~~l 175 (541)
T KOG2442|consen 171 VELAL 175 (541)
T ss_pred EEEEE
Confidence 65444
No 74
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=94.59 E-value=0.047 Score=50.70 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=74.9
Q ss_pred eeEEEEecCCCCCCCcccCCCCCCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCccc----------cc
Q 004101 391 ELDLIYVTGGDGGSEFCLKGSLPIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEED----------SV 460 (773)
Q Consensus 391 ~~~lv~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~----------~~ 460 (773)
.+++|. ++. ..+|.... +.-...|.|.|++||.|+|..|..++.++||..+|+.++....... ..
T Consensus 65 ~~~lV~--adP--p~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq 139 (193)
T KOG3920|consen 65 NLELVL--ADP--PHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQ 139 (193)
T ss_pred Ccceee--cCC--hhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccc
Confidence 455665 222 25564322 2345678999999999999999999999999999999876544332 12
Q ss_pred ccccccEEEEehhhHHHHHHHHhcCCCcEEEEEecce
Q 004101 461 DVHVLPATLVGFAESVRLKVYINSTRRARARIIFGGT 497 (773)
Q Consensus 461 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~ 497 (773)
+...+|++.+...+|..++.-+++....-+.|..+..
T Consensus 140 ~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPVn 176 (193)
T KOG3920|consen 140 DRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPVN 176 (193)
T ss_pred cccCCceEEEeccceEEEehhHHHhCCccEEEecccc
Confidence 3577999999999999888888877776666665543
No 75
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=94.31 E-value=0.9 Score=41.40 Aligned_cols=57 Identities=11% Similarity=0.150 Sum_probs=42.1
Q ss_pred eEEEEEEEEecCCCCeeEEEEEECCCCcEEEEecCeeEEecCCcEEEEEEEEEeeccc
Q 004101 682 STMIRRRLTNVGSPNSIYSVKVTAPEDVEVRIKPQRLIFKYVNQSLIYRIWIISRKRM 739 (773)
Q Consensus 682 ~~~~~rtvtn~g~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~ 739 (773)
.-..+++|+|....+.+|++++..++|+++......+++. +|++.++.|.+..+...
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~-~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVP-PGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEEC-CCCEEEEEEEEEECHHH
Confidence 4567899999999999999999999999996666889997 89999999999999874
No 76
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=93.82 E-value=0.12 Score=52.51 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=46.1
Q ss_pred CceeEEEEecCCCCCCCcccCCCCC-----CCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCC
Q 004101 389 EKELDLIYVTGGDGGSEFCLKGSLP-----IAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEI 453 (773)
Q Consensus 389 ~~~~~lv~~~~~~~~~~~c~~~~~~-----~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~ 453 (773)
...-++||. ..|...++. ..+++|||+|+.++.+.+.+|..+++..||.|+|++++..
T Consensus 44 ~v~g~lVyv-------nyG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 44 NVTAELVYA-------NYGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CceEEEEEc-------CCCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 446778882 234443332 5689999999999999889999999999999999999864
No 77
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=93.76 E-value=0.75 Score=42.18 Aligned_cols=78 Identities=19% Similarity=0.250 Sum_probs=56.2
Q ss_pred ceeEEeecCcceEEEEEEEEecCCCCeeEEEEEEC----CCCc--------------------EEEEecCeeEEecCCcE
Q 004101 671 SISVVFKHGKKSTMIRRRLTNVGSPNSIYSVKVTA----PEDV--------------------EVRIKPQRLIFKYVNQS 726 (773)
Q Consensus 671 s~~~~~~~~~~~~~~~rtvtn~g~~~~~y~~~~~~----~~g~--------------------~v~v~p~~~~~~~~g~~ 726 (773)
.|.+.+..+. .++++++|+|.++.+.+|.+++.. ..|+ -+++ |..++++ ++++
T Consensus 18 YFdL~~~P~q-~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl~-~~~s 94 (121)
T PF06030_consen 18 YFDLKVKPGQ-KQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTLP-PNES 94 (121)
T ss_pred eEEEEeCCCC-EEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEEC-CCCE
Confidence 3455544333 789999999999999999998641 1111 1222 4457887 8999
Q ss_pred EEEEEEEEeecccCCCCCceEeEEEEEE
Q 004101 727 LIYRIWIISRKRMTKDRMSFAQGQLAWV 754 (773)
Q Consensus 727 ~~~~vt~~~~~~~~~~~~~~~~G~l~~~ 754 (773)
++++++++.|...-. +.+-|-|.++
T Consensus 95 k~V~~~i~~P~~~f~---G~ilGGi~~~ 119 (121)
T PF06030_consen 95 KTVTFTIKMPKKAFD---GIILGGIYFS 119 (121)
T ss_pred EEEEEEEEcCCCCcC---CEEEeeEEEE
Confidence 999999999987544 7788888876
No 78
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=93.40 E-value=0.11 Score=48.94 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=36.7
Q ss_pred CcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCC
Q 004101 415 AEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEI 453 (773)
Q Consensus 415 ~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~ 453 (773)
-+++|||+++..|...+-.|..+++..|+.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 579999999999999999999999999999999999864
No 79
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.28 Score=52.72 Aligned_cols=81 Identities=16% Similarity=0.046 Sum_probs=63.7
Q ss_pred CcccCCCC---CCCcccceEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCcccc----cccccccEEEEehhhHHH
Q 004101 405 EFCLKGSL---PIAEVRGKMVVCDRGVNGRAEKGQVVKEAGGAAMILANTEINLEEDS----VDVHVLPATLVGFAESVR 477 (773)
Q Consensus 405 ~~c~~~~~---~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~~ 477 (773)
++|.+... ........++|+.||.|.|.+|..+++.+|..++|+||+........ .....++.+.+....|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 56766443 23456678999999999999999999999999999999876554332 335678899999999999
Q ss_pred HHHHHhcC
Q 004101 478 LKVYINST 485 (773)
Q Consensus 478 l~~~~~~~ 485 (773)
|.+|....
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 98876544
No 80
>COG1470 Predicted membrane protein [Function unknown]
Probab=89.81 E-value=3.2 Score=45.97 Aligned_cols=85 Identities=12% Similarity=0.109 Sum_probs=64.5
Q ss_pred ccCCCc--eeEEeecCcceEEEEEEEEecCCCCee-EEEEEECCCCcEEEEecCeeEEecCCcEEEEEEEEEeecccCCC
Q 004101 666 SLNYPS--ISVVFKHGKKSTMIRRRLTNVGSPNSI-YSVKVTAPEDVEVRIKPQRLIFKYVNQSLIYRIWIISRKRMTKD 742 (773)
Q Consensus 666 ~ln~ps--~~~~~~~~~~~~~~~rtvtn~g~~~~~-y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~ 742 (773)
.++.++ +.+..+.+. ..++...|.|.|+.+.| -++++..|.|-++.|+|.++-.-++|++.++++|+++|.....
T Consensus 381 ~v~l~~g~~~lt~taGe-e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~a- 458 (513)
T COG1470 381 LVKLDNGPYRLTITAGE-EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGA- 458 (513)
T ss_pred eEEccCCcEEEEecCCc-cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCC-
Confidence 344444 455544333 68899999999998866 7899999999999999998877689999999999999987544
Q ss_pred CCceEeEEEEEE
Q 004101 743 RMSFAQGQLAWV 754 (773)
Q Consensus 743 ~~~~~~G~l~~~ 754 (773)
+-++=+|+=+
T Consensus 459 --GdY~i~i~~k 468 (513)
T COG1470 459 --GDYRITITAK 468 (513)
T ss_pred --CcEEEEEEEe
Confidence 4454444443
No 81
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=85.41 E-value=9.8 Score=34.66 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=42.3
Q ss_pred eEEEEEEEEecCCCCeeEEEEEEC---CCC----cEEEEecCeeEEecCCcEEEEEEEEEeec
Q 004101 682 STMIRRRLTNVGSPNSIYSVKVTA---PED----VEVRIKPQRLIFKYVNQSLIYRIWIISRK 737 (773)
Q Consensus 682 ~~~~~rtvtn~g~~~~~y~~~~~~---~~g----~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 737 (773)
..+.+++|+|.++.+..+.+.+.. ... -.+.++|..+.+. +|+++++.| +....
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~-pg~~q~vRv-~~~~~ 75 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLE-PGESQTVRV-YRGSK 75 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEE-TTEEEEEEE-EECSG
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeC-CCCcEEEEE-EecCC
Confidence 356789999999988888888764 111 2577999999998 899999999 66444
No 82
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=85.25 E-value=4 Score=39.22 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=34.4
Q ss_pred CCCCCcccceEEEEecCCCch-------------------hhHHHHHHHcCceEEEEeccCC
Q 004101 411 SLPIAEVRGKMVVCDRGVNGR-------------------AEKGQVVKEAGGAAMILANTEI 453 (773)
Q Consensus 411 ~~~~~~~~gkivl~~~g~~~~-------------------~~~~~~~~~~Ga~g~i~~~~~~ 453 (773)
++..-|++||||++.++...+ ..|...+...||.|+|++++..
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 556779999999998765422 2488999999999999998753
No 83
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=81.10 E-value=5.9 Score=44.65 Aligned_cols=56 Identities=7% Similarity=0.109 Sum_probs=49.2
Q ss_pred eEEEEEEEEecCCCCeeEEEEEECCCCcEEEEecCeeEEecCCcEEEEEEEEEeecc
Q 004101 682 STMIRRRLTNVGSPNSIYSVKVTAPEDVEVRIKPQRLIFKYVNQSLIYRIWIISRKR 738 (773)
Q Consensus 682 ~~~~~rtvtn~g~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~ 738 (773)
.-..++.+.|..+.+.+|+++++..++.++...++.+++. +|++.++.|++..+..
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~-~g~~~~~~v~v~~~~~ 402 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVK-AGEKVKLPVFLRTPPD 402 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEEC-CCCEEEEEEEEEechh
Confidence 4567899999999999999999999999998865688887 8999999999999864
No 84
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=80.96 E-value=1.1 Score=53.20 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=34.5
Q ss_pred cCeeEEecCCcEEEEEEEEEeecccCCCCCceEeEEEEEEEcCC-CCccEEEeeEEEE
Q 004101 715 PQRLIFKYVNQSLIYRIWIISRKRMTKDRMSFAQGQLAWVHSGN-SSLYRVRSPISVT 771 (773)
Q Consensus 715 p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~G~l~~~~~~~-~~~~~v~~P~~~~ 771 (773)
|+.|-+ .++.+.+.|+|.+... .. +..++.|.=-+..+ ..++..|+|+-|.
T Consensus 636 p~~l~l--~~~~R~i~VrVDpt~l-~~---G~hy~eV~gyD~~~p~~gplFrIPVTVi 687 (1304)
T KOG1114|consen 636 PEYLML--ANQGRGINVRVDPTGL-AP---GVHYTEVLGYDTANPSRGPLFRIPVTVI 687 (1304)
T ss_pred chhhee--ccCCceeEEEECCcCC-CC---CcceEEEEEeecCCcccCceEEeeeEEE
Confidence 665655 4788999999999876 33 56666666432222 3347899998775
No 85
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=80.85 E-value=12 Score=33.16 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=41.6
Q ss_pred eEEEEEEEEecCCCCeeEEEEEECCCCcEEEEecCeeEEecCCcEEEEEEEEEeecc
Q 004101 682 STMIRRRLTNVGSPNSIYSVKVTAPEDVEVRIKPQRLIFKYVNQSLIYRIWIISRKR 738 (773)
Q Consensus 682 ~~~~~rtvtn~g~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~ 738 (773)
..+.+++|+|.++.+..|++....|..+. |.|..-.+. +|++.++.|++.....
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~y~--v~P~~G~i~-p~~~~~i~I~~~~~~~ 72 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNRYR--VKPSYGIIE-PGESVEITITFQPFDF 72 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTTEE--EESSEEEE--TTEEEEEEEEE-SSST
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCceEE--ecCCCEEEC-CCCEEEEEEEEEeccc
Confidence 57788999999999999999988887655 569987776 8999999999998544
No 86
>COG1470 Predicted membrane protein [Function unknown]
Probab=75.26 E-value=42 Score=37.58 Aligned_cols=57 Identities=11% Similarity=0.175 Sum_probs=47.1
Q ss_pred eEEEEEEEEecCCCCeeEEEEEE-CCCCcEEEEecC-----eeEEecCCcEEEEEEEEEeeccc
Q 004101 682 STMIRRRLTNVGSPNSIYSVKVT-APEDVEVRIKPQ-----RLIFKYVNQSLIYRIWIISRKRM 739 (773)
Q Consensus 682 ~~~~~rtvtn~g~~~~~y~~~~~-~~~g~~v~v~p~-----~~~~~~~g~~~~~~vt~~~~~~~ 739 (773)
+..+++++.|.|..+..|.+++. .|+|....+.-. ++.+. +||+++++|.+.++...
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~-~gE~kdvtleV~ps~na 347 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLK-PGEEKDVTLEVYPSLNA 347 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEec-CCCceEEEEEEecCCCC
Confidence 67899999999999999999998 888876665544 34554 89999999999998764
No 87
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=74.59 E-value=28 Score=32.60 Aligned_cols=68 Identities=12% Similarity=0.143 Sum_probs=53.5
Q ss_pred eEEEEEEEEecCCCC-eeEEEEEECCCCcEEEEecCeeEEecCCcEEEEEEEEEeecccCCCCCceEeEEEEEE
Q 004101 682 STMIRRRLTNVGSPN-SIYSVKVTAPEDVEVRIKPQRLIFKYVNQSLIYRIWIISRKRMTKDRMSFAQGQLAWV 754 (773)
Q Consensus 682 ~~~~~rtvtn~g~~~-~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~G~l~~~ 754 (773)
...+...|-|..+.. ..-+++......+++.-.|..+++. +++.++++.+++.... .. ++.||.|++.
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~-P~~~~~i~~~iKVsSt-et---GvIfG~I~Yd 138 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLA-PHGFARIKATIKVSST-ET---GVIFGNIVYD 138 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeC-CCcEEEEEEEEEEEec-cC---CEEEEEEEEe
Confidence 355666677776544 3356677777889999999999997 8899999999999877 44 7999999986
No 88
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=70.18 E-value=18 Score=26.76 Aligned_cols=44 Identities=11% Similarity=0.002 Sum_probs=26.5
Q ss_pred EEEEecCCCCeeEEEEEECCCCcEEEEecCeeEEecCCcEEEEEEEE
Q 004101 687 RRLTNVGSPNSIYSVKVTAPEDVEVRIKPQRLIFKYVNQSLIYRIWI 733 (773)
Q Consensus 687 rtvtn~g~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~ 733 (773)
++++|.|+.+..-+--...=.-..+..+.. .+. +||+..++|++
T Consensus 2 F~~~N~g~~~L~I~~v~tsCgCt~~~~~~~--~i~-PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTSCGCTTAEYSKK--PIA-PGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeEccCCEEeeCCcc--eEC-CCCEEEEEEEC
Confidence 688999998755432222223344444333 344 89999988874
No 89
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=66.93 E-value=26 Score=30.15 Aligned_cols=53 Identities=11% Similarity=0.081 Sum_probs=32.9
Q ss_pred cceEEEEEEEEecCCCC-eeEEEEEECCCCcEEEEecCee-EEecCCcEEEEEEEEEee
Q 004101 680 KKSTMIRRRLTNVGSPN-SIYSVKVTAPEDVEVRIKPQRL-IFKYVNQSLIYRIWIISR 736 (773)
Q Consensus 680 ~~~~~~~rtvtn~g~~~-~~y~~~~~~~~g~~v~v~p~~~-~~~~~g~~~~~~vt~~~~ 736 (773)
++..+++.+|+|.|... ..+.+.+... |..+ .-..+ .+. +|++.++++++..+
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L~-~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSLA-PGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCcC-CCcEEEEEEEEEeC
Confidence 34788999999999865 4566666543 3222 11222 444 89999998888887
No 90
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=58.10 E-value=69 Score=28.26 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=38.3
Q ss_pred cceEEEEEEEEecCCCC-eeEEE-----EEECCCCc---EEEEecCeeEEecCCcEEEEEEEEEeecc
Q 004101 680 KKSTMIRRRLTNVGSPN-SIYSV-----KVTAPEDV---EVRIKPQRLIFKYVNQSLIYRIWIISRKR 738 (773)
Q Consensus 680 ~~~~~~~rtvtn~g~~~-~~y~~-----~~~~~~g~---~v~v~p~~~~~~~~g~~~~~~vt~~~~~~ 738 (773)
++..++.++++|..+.+ .+-++ ++.. .|+ .+......+++. +|++.++++++.+.+.
T Consensus 14 G~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l~-p~~~~~~~~~i~p~~y 79 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTLK-PGETKSVEVTITPSQY 79 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHSH
T ss_pred CCCEEEEEEEEeCCcCccccceeEEEEEEEEE-CCcccccEeEEEcceeeC-CCCEEEEEEEEEceeE
Confidence 44788999999999887 55222 2333 466 356667777887 8999999999998765
No 91
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=55.28 E-value=33 Score=28.69 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=29.5
Q ss_pred EEEEecCeeEEecCCcEEEEEEEEEeecccCCCCCceEeEEEEEEE
Q 004101 710 EVRIKPQRLIFKYVNQSLIYRIWIISRKRMTKDRMSFAQGQLAWVH 755 (773)
Q Consensus 710 ~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~~~~G~l~~~~ 755 (773)
.|++.|+.+++. .|+++.|++++++... .. ...++|+.
T Consensus 4 ~i~i~p~~~~l~-~G~~~~l~a~~~~~~~------~~-~~~v~w~S 41 (81)
T smart00635 4 SVTVTPTTASVK-KGLTLQLTATVTPSSA------KV-TGKVTWTS 41 (81)
T ss_pred EEEEeCCeeEEe-CCCeEEEEEEEECCCC------Cc-cceEEEEE
Confidence 578899999998 8999999999765543 22 56688983
No 92
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=54.04 E-value=73 Score=27.19 Aligned_cols=46 Identities=20% Similarity=0.134 Sum_probs=32.3
Q ss_pred EEEEEEEEecCCCCeeEEEEEECCCCcEEEEecCeeEEecCCcEEEEEEEE
Q 004101 683 TMIRRRLTNVGSPNSIYSVKVTAPEDVEVRIKPQRLIFKYVNQSLIYRIWI 733 (773)
Q Consensus 683 ~~~~rtvtn~g~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~ 733 (773)
..+.++++|.|....++++.-..-. .-.|.++++. +|++++..+.+
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v~-ag~~~~~~w~l 65 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTVA-AGQTVSLTWPL 65 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEEC-CCCEEEEEEee
Confidence 4788999999998888888763211 1135667776 78887776665
No 93
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=51.90 E-value=1.5e+02 Score=29.19 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=38.1
Q ss_pred cceEEEEEEEEecCCCCeeEEEEEEC----CCCcEEEEecC--eeEEecCCcEEEEEEEEEeecc
Q 004101 680 KKSTMIRRRLTNVGSPNSIYSVKVTA----PEDVEVRIKPQ--RLIFKYVNQSLIYRIWIISRKR 738 (773)
Q Consensus 680 ~~~~~~~rtvtn~g~~~~~y~~~~~~----~~g~~v~v~p~--~~~~~~~g~~~~~~vt~~~~~~ 738 (773)
++..+++.+|.|+|+.+ -|.|++.. ++.+++.--.. ++..-++|+..+..+++++...
T Consensus 37 g~~v~V~~~iyN~G~~~-A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~~ 100 (181)
T PF05753_consen 37 GEDVTVTYTIYNVGSSA-AYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKKS 100 (181)
T ss_pred CcEEEEEEEEEECCCCe-EEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeeee
Confidence 44799999999999974 48888764 23444321111 1222258999999999988754
No 94
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=50.78 E-value=1.3e+02 Score=25.41 Aligned_cols=21 Identities=14% Similarity=0.025 Sum_probs=12.7
Q ss_pred eeEEecCCcEEEEEEEEEeecc
Q 004101 717 RLIFKYVNQSLIYRIWIISRKR 738 (773)
Q Consensus 717 ~~~~~~~g~~~~~~vt~~~~~~ 738 (773)
..++. +||+++|+.++.....
T Consensus 53 ~~~l~-pGe~~~~~~~~~~~~~ 73 (82)
T PF12690_consen 53 EETLE-PGESLTYEETWDLKDL 73 (82)
T ss_dssp EEEE--TT-EEEEEEEESS---
T ss_pred EEEEC-CCCEEEEEEEECCCCC
Confidence 45665 8999999988877653
No 95
>PRK13203 ureB urease subunit beta; Reviewed
Probab=48.86 E-value=38 Score=29.69 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=13.1
Q ss_pred eEEEEEEEEecCCCCe
Q 004101 682 STMIRRRLTNVGSPNS 697 (773)
Q Consensus 682 ~~~~~rtvtn~g~~~~ 697 (773)
..+++++|+|+|+.+.
T Consensus 19 r~~~~l~V~NtGDRPI 34 (102)
T PRK13203 19 RETVTLTVANTGDRPI 34 (102)
T ss_pred CCEEEEEEEeCCCCce
Confidence 4667899999999874
No 96
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=48.11 E-value=50 Score=40.43 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=44.0
Q ss_pred cccccCCCceeEE-e--ec----CcceEEEEEEEEecCCCCeeEEE--EEECCCCcEEE------EecCeeEEecCCcEE
Q 004101 663 RGFSLNYPSISVV-F--KH----GKKSTMIRRRLTNVGSPNSIYSV--KVTAPEDVEVR------IKPQRLIFKYVNQSL 727 (773)
Q Consensus 663 ~~~~ln~ps~~~~-~--~~----~~~~~~~~rtvtn~g~~~~~y~~--~~~~~~g~~v~------v~p~~~~~~~~g~~~ 727 (773)
-++-|.|-+|..+ + .. .+...+++++|||+|+.+..-.+ -+..|.+- +. .--+++.++ +||++
T Consensus 642 FG~GLSYT~F~ys~l~v~~~~~~~~~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~~P~k~L~gF~Kv~L~-pGes~ 719 (765)
T PRK15098 642 FGYGLSYTTFTVSDVKLSSPTMKRDGKVTASVTVTNTGKREGATVVQLYLQDVTAS-MSRPVKELKGFEKIMLK-PGETQ 719 (765)
T ss_pred ccCCCCCccEEeeccEeccccccCCCeEEEEEEEEECCCCCccEEEEEeccCCCCC-CCCHHHhccCceeEeEC-CCCeE
Confidence 3346777777654 2 11 02358899999999986644333 33444221 11 112244554 89999
Q ss_pred EEEEEEEeecc
Q 004101 728 IYRIWIISRKR 738 (773)
Q Consensus 728 ~~~vt~~~~~~ 738 (773)
++++++...+.
T Consensus 720 ~V~~~l~~~~L 730 (765)
T PRK15098 720 TVSFPIDIEAL 730 (765)
T ss_pred EEEEeecHHHh
Confidence 99999887654
No 97
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=46.54 E-value=46 Score=29.17 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=13.0
Q ss_pred eEEEEEEEEecCCCCe
Q 004101 682 STMIRRRLTNVGSPNS 697 (773)
Q Consensus 682 ~~~~~rtvtn~g~~~~ 697 (773)
..+.+++|+|.|+.+.
T Consensus 19 r~~~~l~V~NtGDRPI 34 (101)
T TIGR00192 19 RKTVSVKVKNTGDRPI 34 (101)
T ss_pred CcEEEEEEEeCCCcce
Confidence 4667899999999873
No 98
>PLN03080 Probable beta-xylosidase; Provisional
Probab=45.70 E-value=64 Score=39.49 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=46.6
Q ss_pred eEEEEEEEEecCCCCeeEEEE--EECCCC-----cEEEEecCeeEEecCCcEEEEEEEEEe-eccc--CCCCCce--EeE
Q 004101 682 STMIRRRLTNVGSPNSIYSVK--VTAPED-----VEVRIKPQRLIFKYVNQSLIYRIWIIS-RKRM--TKDRMSF--AQG 749 (773)
Q Consensus 682 ~~~~~rtvtn~g~~~~~y~~~--~~~~~g-----~~v~v~p~~~~~~~~g~~~~~~vt~~~-~~~~--~~~~~~~--~~G 749 (773)
..+++++|||+|+.+....+- +..|.+ ++--+--+++.+. +||++++++++.. .+.. +.+ ..| ..|
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~-~Ges~~V~~~l~~~~~ls~~d~~-~~~~v~~G 762 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTA-SGRSTETEIVVDPCKHLSVANEE-GKRVLPLG 762 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeC-CCCEEEEEEEeCchHHceEEcCC-CcEEEeCc
Confidence 478999999999877555443 333421 1111223345554 8999999988876 4321 110 122 346
Q ss_pred EEEEEEcCCCCccEEEee
Q 004101 750 QLAWVHSGNSSLYRVRSP 767 (773)
Q Consensus 750 ~l~~~~~~~~~~~~v~~P 767 (773)
...+. -++.. |.|+++
T Consensus 763 ~y~l~-vG~~~-~~~~~~ 778 (779)
T PLN03080 763 DHVLM-LGDLE-HSLSIE 778 (779)
T ss_pred cEEEE-EeCCc-cceEEe
Confidence 65543 14666 776654
No 99
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=45.42 E-value=48 Score=29.08 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=13.0
Q ss_pred eEEEEEEEEecCCCCe
Q 004101 682 STMIRRRLTNVGSPNS 697 (773)
Q Consensus 682 ~~~~~rtvtn~g~~~~ 697 (773)
..+++++|+|.|+.+-
T Consensus 19 r~~~~l~V~NtGDRpI 34 (101)
T cd00407 19 REAVTLKVKNTGDRPI 34 (101)
T ss_pred CCEEEEEEEeCCCcce
Confidence 4667899999999873
No 100
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=42.57 E-value=56 Score=26.80 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=22.9
Q ss_pred cceEEEEEEEEecCCCCee-EEEEEECCCCcEE
Q 004101 680 KKSTMIRRRLTNVGSPNSI-YSVKVTAPEDVEV 711 (773)
Q Consensus 680 ~~~~~~~rtvtn~g~~~~~-y~~~~~~~~g~~v 711 (773)
++..+++++|+|.|+.... .++.-..|+|+.+
T Consensus 40 Gd~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 40 GDTVTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred CCEEEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 4479999999999998744 4444455666654
No 101
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=41.04 E-value=1.4e+02 Score=30.87 Aligned_cols=53 Identities=6% Similarity=0.186 Sum_probs=38.2
Q ss_pred EEEEEEEEecCCCCeeEEEEEE---CC---C----------CcEEEEecCeeEEecCCcEEEEEEEEEee
Q 004101 683 TMIRRRLTNVGSPNSIYSVKVT---AP---E----------DVEVRIKPQRLIFKYVNQSLIYRIWIISR 736 (773)
Q Consensus 683 ~~~~rtvtn~g~~~~~y~~~~~---~~---~----------g~~v~v~p~~~~~~~~g~~~~~~vt~~~~ 736 (773)
....++|.|.|+.+..+++++. .| . .-.+-++|..|+++ +|+++.+.|.-..+
T Consensus 33 ~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~-pg~~q~IRli~lg~ 101 (234)
T PRK15308 33 EATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALP-AGTTRTVRVISLQA 101 (234)
T ss_pred ceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEEC-CCCeEEEEEEEcCC
Confidence 4457899999999988887653 21 1 12578899999998 78888877665443
No 102
>PRK13202 ureB urease subunit beta; Reviewed
Probab=39.87 E-value=60 Score=28.61 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=12.6
Q ss_pred EEEEEEEEecCCCCe
Q 004101 683 TMIRRRLTNVGSPNS 697 (773)
Q Consensus 683 ~~~~rtvtn~g~~~~ 697 (773)
.+++++|+|.|+.+-
T Consensus 21 ~~~~l~V~NtGDRPI 35 (104)
T PRK13202 21 SRLQMRIINAGDRPV 35 (104)
T ss_pred ceEEEEEEeCCCCce
Confidence 567899999999873
No 103
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=39.07 E-value=1.3e+02 Score=32.24 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=18.5
Q ss_pred eEEEEEEEEecCCCCeeEEEEEECC
Q 004101 682 STMIRRRLTNVGSPNSIYSVKVTAP 706 (773)
Q Consensus 682 ~~~~~rtvtn~g~~~~~y~~~~~~~ 706 (773)
...++++|+|..+.+.+-.+..+.|
T Consensus 243 ~~~~~itv~N~~~~~v~v~v~d~iP 267 (317)
T PF13598_consen 243 TYEYTITVRNNKDEPVTVTVEDQIP 267 (317)
T ss_pred EEEEEEEEECCCCCCEEEEEEeCCC
Confidence 5667888889888777766666655
No 104
>PRK13205 ureB urease subunit beta; Reviewed
Probab=36.44 E-value=80 Score=29.75 Aligned_cols=43 Identities=14% Similarity=0.215 Sum_probs=27.9
Q ss_pred eEEEEEEEEecCCCCee----EEEE-E----------------ECCCCcEEEEecCeeEEecCCcEEEEEEE
Q 004101 682 STMIRRRLTNVGSPNSI----YSVK-V----------------TAPEDVEVRIKPQRLIFKYVNQSLIYRIW 732 (773)
Q Consensus 682 ~~~~~rtvtn~g~~~~~----y~~~-~----------------~~~~g~~v~v~p~~~~~~~~g~~~~~~vt 732 (773)
..+++++|+|+|+.+.. |++- + ..|+|..|.++ +|+++++++.
T Consensus 19 R~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFE--------PGe~ktV~LV 82 (162)
T PRK13205 19 REAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLE--------PGDARTVNLV 82 (162)
T ss_pred CcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeEC--------CCCeEEEEEE
Confidence 46689999999998733 5542 2 14566665543 5788876654
No 105
>PRK13204 ureB urease subunit beta; Reviewed
Probab=35.96 E-value=78 Score=29.89 Aligned_cols=16 Identities=13% Similarity=0.084 Sum_probs=13.1
Q ss_pred eEEEEEEEEecCCCCe
Q 004101 682 STMIRRRLTNVGSPNS 697 (773)
Q Consensus 682 ~~~~~rtvtn~g~~~~ 697 (773)
..+++++|+|.|+.+.
T Consensus 42 r~~~~l~V~NtGDRPI 57 (159)
T PRK13204 42 RPRTTLTVRNTGDRPI 57 (159)
T ss_pred CcEEEEEEEeCCCCce
Confidence 4668999999999873
No 106
>PRK13201 ureB urease subunit beta; Reviewed
Probab=35.81 E-value=85 Score=28.92 Aligned_cols=43 Identities=12% Similarity=0.127 Sum_probs=27.7
Q ss_pred eEEEEEEEEecCCCCee----EEEE-E----------------ECCCCcEEEEecCeeEEecCCcEEEEEEE
Q 004101 682 STMIRRRLTNVGSPNSI----YSVK-V----------------TAPEDVEVRIKPQRLIFKYVNQSLIYRIW 732 (773)
Q Consensus 682 ~~~~~rtvtn~g~~~~~----y~~~-~----------------~~~~g~~v~v~p~~~~~~~~g~~~~~~vt 732 (773)
..+++++|+|+|+.+.. |++- + ..|+|..|.+ . +|+++++++.
T Consensus 19 r~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRF-------E-PG~~k~V~LV 82 (136)
T PRK13201 19 HPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRF-------E-PGDKKEVQLV 82 (136)
T ss_pred CCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeE-------C-CCCeEEEEEE
Confidence 46678999999998743 5442 2 2456666554 3 6888876654
No 107
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=35.56 E-value=38 Score=24.44 Aligned_cols=24 Identities=8% Similarity=0.324 Sum_probs=19.0
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhcc
Q 004101 573 TALIRSAYPKWSPAAIKSAIMTTA 596 (773)
Q Consensus 573 aALl~~~~P~~s~~~ik~~L~~TA 596 (773)
+--|++.+|++++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345889999999999999997653
No 108
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=34.84 E-value=96 Score=27.10 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=12.3
Q ss_pred eEEEEEEEEecCCCCe
Q 004101 682 STMIRRRLTNVGSPNS 697 (773)
Q Consensus 682 ~~~~~rtvtn~g~~~~ 697 (773)
..+.+++|.|+|+.+-
T Consensus 19 r~~~~i~V~NtGDRPI 34 (106)
T COG0832 19 RPTVTIEVANTGDRPI 34 (106)
T ss_pred CcceEEEEeecCCCce
Confidence 3566788999999873
No 109
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=34.32 E-value=2.5e+02 Score=30.70 Aligned_cols=52 Identities=10% Similarity=0.127 Sum_probs=28.0
Q ss_pred cceEEEEEEEEecCCCCeeE---E-EEEE--C----------C------CCcEEEEecCeeEEecCCcEEEEEEEEEe
Q 004101 680 KKSTMIRRRLTNVGSPNSIY---S-VKVT--A----------P------EDVEVRIKPQRLIFKYVNQSLIYRIWIIS 735 (773)
Q Consensus 680 ~~~~~~~rtvtn~g~~~~~y---~-~~~~--~----------~------~g~~v~v~p~~~~~~~~g~~~~~~vt~~~ 735 (773)
+.+.+++++|||.|+.+..- + +.+. . | .| ++|+|+.= + .+||+++++|+++-
T Consensus 262 gR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~g--L~vs~~~p-I-~PGETrtl~V~a~d 335 (381)
T PF04744_consen 262 GRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERG--LSVSDNSP-I-APGETRTLTVEAQD 335 (381)
T ss_dssp SSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT---EEES--S--B--TT-EEEEEEEEE-
T ss_pred CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCc--ceeCCCCC-c-CCCceEEEEEEeeh
Confidence 44788999999999987542 1 1121 1 1 23 34455521 2 48999999888755
No 110
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=33.75 E-value=1.6e+02 Score=22.46 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=22.4
Q ss_pred cceEEEEEEEEecCCCCee-EEEEEECCCCcEE
Q 004101 680 KKSTMIRRRLTNVGSPNSI-YSVKVTAPEDVEV 711 (773)
Q Consensus 680 ~~~~~~~rtvtn~g~~~~~-y~~~~~~~~g~~v 711 (773)
++..+++++|+|.|..+.+ ..++-..|+|+..
T Consensus 11 Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~ 43 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPATNVVVTDILPSGTTF 43 (53)
T ss_pred CCEEEEEEEEEECCCCceEeEEEEEcCCCCCEE
Confidence 4478999999999987654 3444456666543
No 111
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=33.18 E-value=85 Score=27.49 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=11.7
Q ss_pred eEEEEEEEEecCCCCe
Q 004101 682 STMIRRRLTNVGSPNS 697 (773)
Q Consensus 682 ~~~~~rtvtn~g~~~~ 697 (773)
..+++++|+|+|+.+-
T Consensus 18 r~~~~l~V~N~GDRPI 33 (100)
T PF00699_consen 18 RERITLEVTNTGDRPI 33 (100)
T ss_dssp SEEEEEEEEE-SSS-E
T ss_pred CcEEEEEEEeCCCcce
Confidence 4778999999999874
No 112
>PF14742 GDE_N_bis: N-terminal domain of (some) glycogen debranching enzymes
Probab=32.33 E-value=2.4e+02 Score=27.97 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=44.6
Q ss_pred EEEEEEEEecCCCCeeEEEEEEC----------------CCC-cE-EEEecCeeEEecCC---cEEEEEEEEEeecccCC
Q 004101 683 TMIRRRLTNVGSPNSIYSVKVTA----------------PED-VE-VRIKPQRLIFKYVN---QSLIYRIWIISRKRMTK 741 (773)
Q Consensus 683 ~~~~rtvtn~g~~~~~y~~~~~~----------------~~g-~~-v~v~p~~~~~~~~g---~~~~~~vt~~~~~~~~~ 741 (773)
..-+++|+|.+..+...++++.. ..| +. ..+++..+.|...| ..+...|++.++..
T Consensus 93 ~~E~l~l~N~~~~pv~~~l~l~~~aDFaDiFEVRg~~~~~rg~~~~~~~~~~~l~~~Y~g~D~~~r~t~i~~~~~p~--- 169 (194)
T PF14742_consen 93 LYERLTLTNYSPEPVELTLSLEFDADFADIFEVRGGRRARRGEVLPPEVEDDGLRFSYRGLDGIRRETRISFSPSPA--- 169 (194)
T ss_pred CEEEEEEEeCCCCCEEEEEEEEEECCchhhHhhcCCCCCCCCcccceEEcCCEEEEEEEcCCCCEEEEEEEecCCCC---
Confidence 66788999999999998888651 112 22 67888899998666 45666666633332
Q ss_pred CCCceEeEEEEEE
Q 004101 742 DRMSFAQGQLAWV 754 (773)
Q Consensus 742 ~~~~~~~G~l~~~ 754 (773)
.+..+.+.|.
T Consensus 170 ---~~~~~~~~~~ 179 (194)
T PF14742_consen 170 ---RVEGGRARWR 179 (194)
T ss_pred ---ceECCEEEEE
Confidence 3445667764
No 113
>PRK15019 CsdA-binding activator; Provisional
Probab=30.13 E-value=48 Score=31.46 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=27.3
Q ss_pred EeccccchhhhhHHHHHHHHHhCCCCCHHHHHH
Q 004101 558 VMSGTSMACPHVSGITALIRSAYPKWSPAAIKS 590 (773)
Q Consensus 558 ~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~ 590 (773)
.+.|.| =|+.|-|.+|||.+.+-+.+|++|.+
T Consensus 78 ~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 78 HFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 344555 58999999999999999999999976
No 114
>PRK13198 ureB urease subunit beta; Reviewed
Probab=29.96 E-value=1.1e+02 Score=28.80 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=13.1
Q ss_pred eEEEEEEEEecCCCCe
Q 004101 682 STMIRRRLTNVGSPNS 697 (773)
Q Consensus 682 ~~~~~rtvtn~g~~~~ 697 (773)
..+++++|+|.|+.+.
T Consensus 47 r~~~~l~V~NtGDRPI 62 (158)
T PRK13198 47 KPVTKVKVRNTGDRPI 62 (158)
T ss_pred CcEEEEEEEeCCCCce
Confidence 4668899999999873
No 115
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=28.92 E-value=3.9e+02 Score=23.28 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=24.0
Q ss_pred EEEEEEEEecCCCC-eeEEEEEECCCCcEEE
Q 004101 683 TMIRRRLTNVGSPN-SIYSVKVTAPEDVEVR 712 (773)
Q Consensus 683 ~~~~rtvtn~g~~~-~~y~~~~~~~~g~~v~ 712 (773)
.+-.++|+|.++.+ ..|++++..|.+.+|.
T Consensus 15 f~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~ 45 (101)
T PF00553_consen 15 FQGEVTVTNNGSSPINGWTVTFTFPSGQTIT 45 (101)
T ss_dssp EEEEEEEEESSSSTEESEEEEEEESTTEEEE
T ss_pred eEEEEEEEECCCCccCCEEEEEEeCCCCEEe
Confidence 55679999999887 4699999988776655
No 116
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=28.72 E-value=54 Score=30.82 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=28.3
Q ss_pred EEeccccchhhhhHHHHHHHHHhCCCCCHHHHHHH
Q 004101 557 TVMSGTSMACPHVSGITALIRSAYPKWSPAAIKSA 591 (773)
Q Consensus 557 ~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~ 591 (773)
..+.|.| =|+.|-|++|||.+.+-+.+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 3344666 489999999999999999999999754
No 117
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=27.90 E-value=27 Score=16.02 Aligned_cols=6 Identities=33% Similarity=0.767 Sum_probs=4.1
Q ss_pred cccCCC
Q 004101 509 QFSARG 514 (773)
Q Consensus 509 ~fSs~G 514 (773)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 118
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=27.51 E-value=1e+02 Score=30.68 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.3
Q ss_pred eEEEEEEEEecCCCCe
Q 004101 682 STMIRRRLTNVGSPNS 697 (773)
Q Consensus 682 ~~~~~rtvtn~g~~~~ 697 (773)
..+++++|+|.|+.+-
T Consensus 128 r~~~~l~V~NtGDRPI 143 (208)
T PRK13192 128 RPAVTLDVTNTGDRPI 143 (208)
T ss_pred CCEEEEEEEeCCCCce
Confidence 4678999999999873
No 119
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=26.23 E-value=57 Score=25.29 Aligned_cols=39 Identities=23% Similarity=0.397 Sum_probs=23.9
Q ss_pred ceEEeccccchhhhhHHHHH------HHHHhCCCCCHHHHHHHHH
Q 004101 555 NFTVMSGTSMACPHVSGITA------LIRSAYPKWSPAAIKSAIM 593 (773)
Q Consensus 555 ~y~~~sGTSmAaP~VAG~aA------Ll~~~~P~~s~~~ik~~L~ 593 (773)
+--.+.||=+..=.|....+ -+.+.||+++.++|+++|.
T Consensus 10 G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 10 GQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp G--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 34455677766655555533 3667799999999999984
No 120
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=26.01 E-value=87 Score=20.21 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=8.6
Q ss_pred HHhhhhHHHHHHHHHH
Q 004101 18 VMEAKSQLLFSTLFLS 33 (773)
Q Consensus 18 ~m~~~~~~~~~~~~~~ 33 (773)
.||+|..+++++++.+
T Consensus 5 ~mmKkil~~l~a~~~L 20 (25)
T PF08139_consen 5 SMMKKILFPLLALFML 20 (25)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4666655555555444
No 121
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=25.92 E-value=64 Score=30.31 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=27.4
Q ss_pred EeccccchhhhhHHHHHHHHHhCCCCCHHHHHH
Q 004101 558 VMSGTSMACPHVSGITALIRSAYPKWSPAAIKS 590 (773)
Q Consensus 558 ~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~ 590 (773)
.+.|.| =|+.|-|.+|||.+.+-+.+|++|.+
T Consensus 68 ~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 68 ELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 344556 58999999999999999999999875
No 122
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=25.10 E-value=62 Score=30.48 Aligned_cols=31 Identities=29% Similarity=0.361 Sum_probs=25.5
Q ss_pred eccccchhhhhHHHHHHHHHhCCCCCHHHHHH
Q 004101 559 MSGTSMACPHVSGITALIRSAYPKWSPAAIKS 590 (773)
Q Consensus 559 ~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~ 590 (773)
+.|=|= |++|.|.+|++.+.+-..+|++|..
T Consensus 74 F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 74 FFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred Eeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 334443 7999999999999999999999864
No 123
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=24.98 E-value=3.6e+02 Score=24.14 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=34.2
Q ss_pred cccc-cCCeEeEEeeecCCCCCHHHHHHHHHHhhhCCCcEEEeccCCC
Q 004101 260 RGMA-PGAHIAVYKVCWFNGCYSSDILAAMDVAIRDGVDVLSLSLGGF 306 (773)
Q Consensus 260 ~GvA-P~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~g~dVIn~SlG~~ 306 (773)
.+.. ++++|+.+ +.+.||....++.-+++..+.|+|+|-+|-...
T Consensus 31 ~~y~~~~~elvgf--~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~ 76 (107)
T PF08821_consen 31 ARYDDEDVELVGF--FTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMV 76 (107)
T ss_pred ccCCCCCeEEEEE--eeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEe
Confidence 4444 46777765 455678888999999999999999999986543
No 124
>PRK13986 urease subunit alpha; Provisional
Probab=24.31 E-value=1.2e+02 Score=30.52 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=27.9
Q ss_pred eEEEEEEEEecCCCCee----EEE-EE----------------ECCCCcEEEEecCeeEEecCCcEEEEEEE
Q 004101 682 STMIRRRLTNVGSPNSI----YSV-KV----------------TAPEDVEVRIKPQRLIFKYVNQSLIYRIW 732 (773)
Q Consensus 682 ~~~~~rtvtn~g~~~~~----y~~-~~----------------~~~~g~~v~v~p~~~~~~~~g~~~~~~vt 732 (773)
..+++++|+|.|+.+-. |++ ++ ..|+|..|.+ . +|+++++++.
T Consensus 124 r~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRF-------E-PG~~k~V~LV 187 (225)
T PRK13986 124 KKAVSVKVKNVGDRPVQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRF-------E-PGEEKSVELI 187 (225)
T ss_pred CcEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeE-------C-CCCeeEEEEE
Confidence 46789999999998733 544 22 1456666554 3 6888876543
No 125
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=24.30 E-value=58 Score=22.35 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=10.6
Q ss_pred chhhhhHHHHHHH
Q 004101 564 MACPHVSGITALI 576 (773)
Q Consensus 564 mAaP~VAG~aALl 576 (773)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998743
No 126
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=24.23 E-value=5.6e+02 Score=28.90 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=45.4
Q ss_pred CceeEEeecCc-ceEEEEEE-EEecCCCCeeEEEEEECC----------CCcEEEEecCeeEEecCCcEEEEEEEEEeec
Q 004101 670 PSISVVFKHGK-KSTMIRRR-LTNVGSPNSIYSVKVTAP----------EDVEVRIKPQRLIFKYVNQSLIYRIWIISRK 737 (773)
Q Consensus 670 ps~~~~~~~~~-~~~~~~rt-vtn~g~~~~~y~~~~~~~----------~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 737 (773)
+++.+.|.... ....-+++ |+|.|...-.|.=.-... ..-..-+....+++- +||++.|.|+|.+..
T Consensus 235 ~~~~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvil-PGe~~~~~~~F~s~~ 313 (426)
T PF14646_consen 235 ISIRLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVIL-PGETRNFPFMFKSRK 313 (426)
T ss_pred cceEEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEEC-CCceEEEEEEEeCCC
Confidence 34456665432 24445566 999999888887543322 233445566667776 899999999999987
Q ss_pred c
Q 004101 738 R 738 (773)
Q Consensus 738 ~ 738 (773)
.
T Consensus 314 ~ 314 (426)
T PF14646_consen 314 V 314 (426)
T ss_pred c
Confidence 6
No 127
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=23.80 E-value=79 Score=29.13 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=26.4
Q ss_pred EeccccchhhhhHHHHHHHHHhCCCCCHHHHHHH
Q 004101 558 VMSGTSMACPHVSGITALIRSAYPKWSPAAIKSA 591 (773)
Q Consensus 558 ~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~ 591 (773)
.+.|.|= |+.|-|++||+.+.+-+.+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4445554 67999999999999999999998764
No 128
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=23.28 E-value=3.4e+02 Score=27.79 Aligned_cols=53 Identities=13% Similarity=0.028 Sum_probs=36.4
Q ss_pred eEEEEEEEEecCCCCeeEEEEEECC---CCcEEEEecCeeEEecCCcEEEEEEEEEe
Q 004101 682 STMIRRRLTNVGSPNSIYSVKVTAP---EDVEVRIKPQRLIFKYVNQSLIYRIWIIS 735 (773)
Q Consensus 682 ~~~~~rtvtn~g~~~~~y~~~~~~~---~g~~v~v~p~~~~~~~~g~~~~~~vt~~~ 735 (773)
....+++|+|.++.+..-...++.. ....+.|+|..+.+. +|+++.+.|....
T Consensus 39 ~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~-pg~~q~vRii~~~ 94 (230)
T PRK09918 39 DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVE-PGQSQQVRFILKS 94 (230)
T ss_pred CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEEC-CCCceEEEEEECC
Confidence 4667889999997643323333322 124588999999997 8999988877653
No 129
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=23.06 E-value=84 Score=34.12 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=32.6
Q ss_pred cceEEEEEEEEecCCCCee---E-EEEEE-------------CCC-----CcEEEEecCeeEEecCCcEEEEEEEEEe
Q 004101 680 KKSTMIRRRLTNVGSPNSI---Y-SVKVT-------------APE-----DVEVRIKPQRLIFKYVNQSLIYRIWIIS 735 (773)
Q Consensus 680 ~~~~~~~rtvtn~g~~~~~---y-~~~~~-------------~~~-----g~~v~v~p~~~~~~~~g~~~~~~vt~~~ 735 (773)
+..-+++.+|||.|+.+.. | ++.+. -|+ |++|+=++. + .+||++++.|+++-
T Consensus 281 GR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~p---I-~PGETr~v~v~aqd 354 (399)
T TIGR03079 281 GRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSA---I-APGETVEVKMEAKD 354 (399)
T ss_pred CcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCC---c-CCCcceEEEEEEeh
Confidence 3368899999999998743 2 23332 122 555443222 2 48999998877765
No 130
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=21.78 E-value=1.3e+02 Score=21.69 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhcc
Q 004101 572 ITALIRSAYPKWSPAAIKSAIMTTA 596 (773)
Q Consensus 572 ~aALl~~~~P~~s~~~ik~~L~~TA 596 (773)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567899999999999999998643
Done!